BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039362
(440 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/440 (69%), Positives = 372/440 (84%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L FSALS G+I+YS +V S LS+P IF WNT+IRGYS SKNP +S+S+F+KMLR GV+
Sbjct: 52 ILCFSALSNSGDINYSYRVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVA 111
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+LTYPFL KAS RL +E V+VHA I KTG+ESD FI NSLIHMY +CG+ ++A++V
Sbjct: 112 PDYLTYPFLVKASARLLNQETGVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKV 171
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD + K VSWNSMLDGYAKCGEM MA++ FE M E++V SWS+LIDGYVK G+Y EA+
Sbjct: 172 FDSIQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAM 231
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
IFE+M+ G KANEVT+VSV CACAH+GAL++GRM+ +Y++D GL LTL LQTSL+DMY
Sbjct: 232 AIFEKMQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVDMY 291
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCGAI+EAL++F V K Q+DVLIWNA+IGGLA HG V+ESL+LF EMQIVGI PDE+T
Sbjct: 292 AKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPDEVT 351
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+L LL+ACAHGGLV EAW+FF+SL K GM P SEHYACMVD L+RAGQ+T AY+FICQMP
Sbjct: 352 YLCLLAACAHGGLVKEAWFFFESLSKCGMTPTSEHYACMVDVLARAGQLTTAYQFICQMP 411
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
EPTASMLG+LL+GC+NH L LAEIVG+KL+EL+P+HDGRY+GLSN+YA+ KRWD+AR+
Sbjct: 412 TEPTASMLGALLSGCINHRNLALAEIVGRKLIELEPNHDGRYIGLSNMYAVDKRWDDARS 471
Query: 421 TREAMETRGVKKYPGWSFVE 440
REAME RGVKK PG+SFVE
Sbjct: 472 MREAMERRGVKKSPGFSFVE 491
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/440 (68%), Positives = 369/440 (83%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+LSFSALS G+IDYS +V S +S+P IF WN +IRGYS SKNP S+S+F+KMLR GV+
Sbjct: 52 ILSFSALSNSGDIDYSYRVFSQISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKMLRHGVA 111
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+LTYPFL KAS RL+K++ V+VHAQI KTG+ESD FI NSLIHMY SCG+I++A +V
Sbjct: 112 PDYLTYPFLVKASARLSKQKSGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKV 171
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
F+ M K VSWNSMLDGYAKCGEM MA++VFE M ER+V SWS+ IDGYVK G+Y+EA+
Sbjct: 172 FESMQGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAM 231
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+FE+MR VG KANEVT+VSVL ACAHLGAL +GRMM +Y+ID L +T+ LQTSL+DMY
Sbjct: 232 AVFEKMRAVGPKANEVTMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVDMY 291
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCGAI+EAL VF G+ K Q+DV IWNAMIGGLA HG V+ESL+LF EMQ+ GI DEIT
Sbjct: 292 AKCGAIEEALFVFRGISKSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDEIT 351
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+L LL+ACAHGGLV EAW FF+SL KRGM P SEHYACMVD L+RAGQ+T AY+FICQ+P
Sbjct: 352 YLCLLAACAHGGLVKEAWNFFESLVKRGMTPTSEHYACMVDVLARAGQLTTAYQFICQIP 411
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
+EPTASMLG++ +GC+NH DLAE VG+KL+EL P++DGRY+GLSNVYA+ KRWD++++
Sbjct: 412 IEPTASMLGAIFSGCINHRNFDLAETVGRKLIELDPNNDGRYIGLSNVYAVVKRWDDSKS 471
Query: 421 TREAMETRGVKKYPGWSFVE 440
REAME RGVKK PG+SFVE
Sbjct: 472 MREAMERRGVKKSPGFSFVE 491
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/440 (69%), Positives = 364/440 (82%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+LSFSA+S G+ID+S ++ + +P I WN++IRG+SK KNPN S+S+FVKMLR GV
Sbjct: 50 LLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVC 109
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PDHLTYPF+AKA RL++ LA+AVH +IAK G D FI+NSLIHMYGSCGDI AR+V
Sbjct: 110 PDHLTYPFIAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKV 169
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD M + SVSWN+MLDGYAKCG+++ ARQVFE MP+R+VVSWS++IDG VK G+Y AL
Sbjct: 170 FDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVAL 229
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
IFE MR VG KANEVT+VSVLCACAHLGAL+QGR M +YM+D + TL L+TSL+DMY
Sbjct: 230 AIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMY 289
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCGAI+EA+ VF GV Q+DVL+WN +IGGLA HG V ESLELF EMQ++GI PDEIT
Sbjct: 290 AKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVPDEIT 349
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+L L SACAHGGLV EAW+FFKSLGK+GMVPKSEHYACMVD LSRAGQ+ EAY+FI QMP
Sbjct: 350 YLCLFSACAHGGLVHEAWHFFKSLGKQGMVPKSEHYACMVDVLSRAGQLAEAYDFIAQMP 409
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
+EPTASMLG+LL GCMNH + DLAE VG+KL+EL+PDHDGRY+GLSNVYA K WD AR
Sbjct: 410 MEPTASMLGALLNGCMNHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGVKLWDNARM 469
Query: 421 TREAMETRGVKKYPGWSFVE 440
REAME RGVKK PG+SFVE
Sbjct: 470 MREAMERRGVKKSPGFSFVE 489
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 303/440 (68%), Positives = 360/440 (81%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+LSFSA+S G+ID+S ++ + +P I WN++IRG+SK KNPN S+S+FVKMLR GV
Sbjct: 43 LLSFSAISSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVC 102
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PDHLTYPF+AKA RL++ LA+AVH +IAK G D FI+NSLIHMYGSCGDI AR+V
Sbjct: 103 PDHLTYPFVAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKV 162
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD M + SVSWN+MLDGYAKCG+++ A QVF MP+R+VVSWS++IDG VK G+Y AL
Sbjct: 163 FDEMLIRNSVSWNAMLDGYAKCGDLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVAL 222
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
IFE MR VG KAN VT+VSVLCACAHLGAL+ GR M +YM+D + TL L+TSL+DMY
Sbjct: 223 AIFERMRVVGPKANXVTMVSVLCACAHLGALEXGRXMHQYMVDNTMRFTLVLRTSLMDMY 282
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCGAI+EA+ VF GV Q+DVL+WN +IGGLA HG V ESLELF EMQ++GI PDEIT
Sbjct: 283 AKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVXESLELFKEMQVLGIVPDEIT 342
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+L L SACAHGGLV EAW+FFKSLGK+GMVPKSEHYACMVD LSRAGQ+ EAY+FI QMP
Sbjct: 343 YLCLFSACAHGGLVHEAWHFFKSLGKQGMVPKSEHYACMVDVLSRAGQLAEAYDFIAQMP 402
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
+EPTASMLG+LL GCMNH + DLAE VG+KL+EL+PDHDGRY+GLSNVYA K WD AR
Sbjct: 403 MEPTASMLGALLNGCMNHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGVKLWDNARM 462
Query: 421 TREAMETRGVKKYPGWSFVE 440
REAME RGVKK PG+SFVE
Sbjct: 463 MREAMERRGVKKSPGFSFVE 482
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 291/440 (66%), Positives = 359/440 (81%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L FSALS ++DYS K++ ++ NP F WNT+IR +S +KNPN SI++F+KML+ GVS
Sbjct: 51 LLLFSALSPARDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVS 110
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+LTYPFL KA+ +L +EL +AVH I K+G+E D FI NSLIHMY SC DI AR+V
Sbjct: 111 PDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKV 170
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD MP K V+WN+MLDGYAKCG++NMAR+VF LMPE++VVSWS+LIDGYVK Y EA+
Sbjct: 171 FDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAM 230
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+FE M G ANEVTLVS LCACAHLGAL+ GRMM RY+++ L LT+ LQTSL+DMY
Sbjct: 231 ALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMY 290
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCGAI EAL VF ++DVLIWNA+IGGLA HG +KE++ LF EM++VGI PDEIT
Sbjct: 291 AKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEIT 350
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+L LLS CAHGGLV EAWYFF L K GM+PK EHYACMVDALSRAGQV+EAY+F+CQMP
Sbjct: 351 YLCLLSCCAHGGLVEEAWYFFDCLRKHGMIPKVEHYACMVDALSRAGQVSEAYQFLCQMP 410
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
++PT+SMLG+LL+GCM HGKLD+A++VG++LVEL P+HDGRYVGLSN+YA KRWD+A+
Sbjct: 411 VQPTSSMLGALLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKN 470
Query: 421 TREAMETRGVKKYPGWSFVE 440
REAME +GVKK PG+SF+E
Sbjct: 471 IREAMERKGVKKSPGFSFIE 490
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 279/387 (72%), Positives = 331/387 (85%)
Query: 54 MLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113
ML+ G+ PDHLTYPFLAKA+ RL ++EL V++H + K+G+E D F++NSLIHMYGSCGD
Sbjct: 1 MLQVGIYPDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGD 60
Query: 114 IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKC 173
IVYAR+VFDG P K VSWNSM+DGYAKCG +++AR +F+LMPER+V SWS LIDGY K
Sbjct: 61 IVYARKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKS 120
Query: 174 GDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
G+Y +A+ +FE+MR G KANEVT+VSVLCACAHLGALD+GRMM +Y++D G L L L+
Sbjct: 121 GNYGDAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLR 180
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
TSLIDMYAKCGA++EA VF GV +SDVLIWNAMIGGLA HG VKESL+L+TEMQI G
Sbjct: 181 TSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQIAG 240
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAY 353
I PDEITFL LLSACAHGGLV +A Y F+ LGK GM PK+EHYACMVD ++RAGQV EAY
Sbjct: 241 IKPDEITFLCLLSACAHGGLVKQASYVFEGLGKNGMTPKTEHYACMVDVMARAGQVAEAY 300
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413
+F+CQMPLEPTASMLG+LL+GCMNHGKLDLAE++GKKL+EL P+HDGRYVGLSNVYAI +
Sbjct: 301 QFLCQMPLEPTASMLGALLSGCMNHGKLDLAELIGKKLIELDPEHDGRYVGLSNVYAIGR 360
Query: 414 RWDEARTTREAMETRGVKKYPGWSFVE 440
RWDEAR REAME RGVKK PG+SF+E
Sbjct: 361 RWDEARIMREAMERRGVKKTPGYSFLE 387
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 146/328 (44%), Gaps = 34/328 (10%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + + + + W+ +I GY+KS N ++++F KM +G + +T +
Sbjct: 90 GYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGDAMAVFEKMRTSGPKANEVTMVSVL 149
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L + +H + G+E +L + SLI MY CG + A VF G+ + S
Sbjct: 150 CACAHLGALDKGRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAVEEAFAVFRGVSLRKS- 208
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+V+ W+A+I G G KE+L ++ EM+ G
Sbjct: 209 ----------------------------DVLIWNAMIGGLATHGLVKESLDLYTEMQIAG 240
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K +E+T + +L ACAH G + Q + + G++ ++D+ A+ G + EA
Sbjct: 241 IKPDEITFLCLLSACAHGGLVKQASYVFEGLGKNGMTPKTEHYACMVDVMARAGQVAEAY 300
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD-EITFLGLLSACA 309
+ + ++ A++ G HG K L +++ + P+ + ++GL + A
Sbjct: 301 QFLCQMPLEPTASML-GALLSGCMNHG--KLDLAELIGKKLIELDPEHDGRYVGLSNVYA 357
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYA 337
G EA +++ +RG V K+ Y+
Sbjct: 358 IGRRWDEARIMREAMERRG-VKKTPGYS 384
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 269/440 (61%), Positives = 349/440 (79%), Gaps = 1/440 (0%)
Query: 2 LSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP 61
LSFSALS G++DY+ K LS LS+P + WN VIRG+S S+NP KSIS++++MLR G+ P
Sbjct: 47 LSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLP 106
Query: 62 DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121
DH+TYPFL K+S RL+ R+L ++H + K+G E DLFI N+LIHMYGS D AR++F
Sbjct: 107 DHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLF 166
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
D MP K V+WNS+LD YAK G++ AR VF+ M ER+VV+WS++IDGYVK G+Y +AL
Sbjct: 167 DEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALE 226
Query: 182 IFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
IF++M +GS KANEVT+VSV+CACAHLGAL++G+ + RY++D L LT+ LQTSLIDMY
Sbjct: 227 IFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMY 286
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG+I +A VF+ ++D L+WNA+IGGLA HGF++ESL+LF +M+ I PDEIT
Sbjct: 287 AKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEIT 346
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
FL LL+AC+HGGLV EAW+FFKSL + G PKSEHYACMVD LSRAG V +A++FI +MP
Sbjct: 347 FLCLLAACSHGGLVKEAWHFFKSLKESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMP 406
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
++PT SMLG+LL GC+NHG L+LAE VGKKL+ELQP +DGRYVGL+NVYAI K++ AR+
Sbjct: 407 IKPTGSMLGALLNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARS 466
Query: 421 TREAMETRGVKKYPGWSFVE 440
REAME +GVKK G S ++
Sbjct: 467 MREAMEKKGVKKIAGHSILD 486
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 262/436 (60%), Positives = 344/436 (78%), Gaps = 1/436 (0%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A++ ++DY+ K LS LS+P + WN VIRG+S S+NP KSIS++++MLR G+ PDH+T
Sbjct: 797 AVNVTSDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMT 856
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
YPFL K+S RL+ R+L ++H + K+G E DLFI N+LIHMYGS D AR++FD MP
Sbjct: 857 YPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMP 916
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
K V+WNS+LD YAK G++ AR VF+ M ER+VV+WS++IDGYVK G+Y +AL IF++
Sbjct: 917 HKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQ 976
Query: 186 MRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M +GS KANEVT+VSV+CACAHLGAL++G+ + RY++D L LT+ LQTSLIDMYAKCG
Sbjct: 977 MMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCG 1036
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+I +A VF+ ++D L+WNA+IGGLA HGF++ESL+LF +M+ I PDEITFL L
Sbjct: 1037 SIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCL 1096
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
L+AC+HGGLV EAW+FFKSL + G PKSEHYACMVD LSRAG V +A++FI +MP++PT
Sbjct: 1097 LAACSHGGLVKEAWHFFKSLKESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPT 1156
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
SMLG+LL GC+NHG L+LAE VGKKL+ELQP +DGRYVGL+NVYAI K++ AR+ REA
Sbjct: 1157 GSMLGALLNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREA 1216
Query: 425 METRGVKKYPGWSFVE 440
ME +GVKK G S ++
Sbjct: 1217 MEKKGVKKIAGHSILD 1232
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 92/389 (23%), Positives = 161/389 (41%), Gaps = 37/389 (9%)
Query: 25 NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH-LTYPFLAKASGRLAKRELAV 83
N I ++ +I G K K+ ++SL++++ R+G+ PD + L S +
Sbjct: 315 NADIALYDVLIGGLCKHKDLEMALSLYLEIKRSGIPPDRGILGKLLCSFSEESELSRITE 374
Query: 84 AVHAQIAKTG----YES--DLFISNSLIH-----------MYGSCG--DIVYAREVFDGM 124
+ I K Y+S + FI N L+H Y S G +IV + +
Sbjct: 375 VIIGDIDKKSVMLLYKSLFEGFIRNDLVHEAYSFIQNLMGNYESDGVSEIVKLLKDHNKA 434
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVS----WSALIDGYVKCGDYKEAL 180
S S + +++ K +++MA + + + ++ ++ +I+G K G +E+L
Sbjct: 435 ILPDSDSLSIVINCLVKANKVDMAVTLLHDIVQNGLIPGPMMYNNIIEGMCKEGRSEESL 494
Query: 181 VIFEEMRDVGSKANEVTLVSVL-C---ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
+ EM+D G + ++ TL + C C +GALD +L+ M G + T L
Sbjct: 495 KLLGEMKDAGVEPSQFTLNCIYGCLAERCDFVGALD----LLKKMRFYGFEPWIKHTTFL 550
Query: 237 IDMYAKCGAIKEALIVFHGV--EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
+ + G +A V E ++ A I GL + V LELF ++ G
Sbjct: 551 VKKLCENGRAVDACKYLDDVAGEGFLGHMVASTAAIDGLIKNEGVDRGLELFRDICANGH 610
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
PD I + L+ A MEA F + +G+ P Y M+D + G++
Sbjct: 611 CPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLS 670
Query: 355 FICQM---PLEPTASMLGSLLTGCMNHGK 380
I +M P SL+ G G+
Sbjct: 671 CIVRMYEDEKNPDVITYTSLIHGLCASGR 699
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 128/320 (40%), Gaps = 43/320 (13%)
Query: 26 PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAV 85
P +N +I G K +S+ L +M AGV P T L G LA+R V
Sbjct: 472 PGPMMYNNIIEGMCKEGRSEESLKLLGEMKDAGVEPSQFT---LNCIYGCLAERCDFVGA 528
Query: 86 HAQIAKT---GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+ K G+E + + L+ G V A + D + G
Sbjct: 529 LDLLKKMRFYGFEPWIKHTTFLVKKLCENGRAVDACKYLDDVA------------GEGFL 576
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV---TLV 199
G M V+ +A IDG +K L +F ++ G + + L+
Sbjct: 577 GHM---------------VASTAAIDGLIKNEGVDRGLELFRDICANGHCPDVIAYHVLI 621
Query: 200 SVLC-ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL--IVFHGV 256
LC AC + + ++ M+ KGL T+ S+ID + K G I L IV
Sbjct: 622 KALCKACRTM----EADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYE 677
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
++ DV+ + ++I GL G E++ + EM+ P+ ITF+ L+ G E
Sbjct: 678 DEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGE 737
Query: 317 AWYFFKSLGKRGMVPKSEHY 336
A +F+ + ++ M P S Y
Sbjct: 738 ALVYFREMEEKEMEPDSAVY 757
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/344 (18%), Positives = 131/344 (38%), Gaps = 68/344 (19%)
Query: 104 LIHMYGSCGDIVYAREVFD-----GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
I G+ G + A VFD G+ + ++N +L+ +K ++ L R
Sbjct: 147 FIRCLGNAGLVDEASSVFDRVREMGLCVPNAYTYNCLLEAISKSNSSSVELVEARLKEMR 206
Query: 159 NV------VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD 212
+ + + ++ Y G + AL +F E+ G ++ + V+ C G +D
Sbjct: 207 DCGFHFDKFTLTPVLQVYCNTGKSERALSVFNEILSRGWLDEHISTILVVSFCK-WGQVD 265
Query: 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH--QSDVLIWNAMI 270
+ ++ + ++ + L LI + K I +A +F + + +D+ +++ +I
Sbjct: 266 KAFELIEMLEERDIRLNYKTYCVLIHGFVKESRIDKAFQLFEKMRRMGMNADIALYDVLI 325
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDE-------------------------------- 298
GGL H ++ +L L+ E++ GI PD
Sbjct: 326 GGLCKHKDLEMALSLYLEIKRSGIPPDRGILGKLLCSFSEESELSRITEVIIGDIDKKSV 385
Query: 299 -ITFLGLLSACAHGGLVMEAWYFFKSL------------------GKRGMVPKSEHYACM 339
+ + L LV EA+ F ++L + ++P S+ + +
Sbjct: 386 MLLYKSLFEGFIRNDLVHEAYSFIQNLMGNYESDGVSEIVKLLKDHNKAILPDSDSLSIV 445
Query: 340 VDALSRAGQVTEAYEF---ICQMPLEPTASMLGSLLTGCMNHGK 380
++ L +A +V A I Q L P M +++ G G+
Sbjct: 446 INCLVKANKVDMAVTLLHDIVQNGLIPGPMMYNNIIEGMCKEGR 489
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 119/282 (42%), Gaps = 13/282 (4%)
Query: 35 IRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGY 94
I G K++ ++ + LF + G PD + Y L KA + + A + ++ G
Sbjct: 586 IDGLIKNEGVDRGLELFRDICANGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGL 645
Query: 95 ESDLFISNSLIHMYGSCGDIVYAR----EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ + NS+I + G+I +++ +++ S++ G G + A
Sbjct: 646 KPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIF 705
Query: 151 VFELMPER----NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
+ M + N +++ ALI G KCG EALV F EM + + + +S++ +
Sbjct: 706 RWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSLVSSFL 765
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK-HQSDVLI 265
++ G + R M+ KG P+ M A + + + K
Sbjct: 766 SSENINAGFGIFREMVHKG---RFPVSVDRNYMLA-VNVTSDVDYAYKFLSKLSDPPNYG 821
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
WN +I G + ++S+ ++ +M G+ PD +T+ L+ +
Sbjct: 822 WNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKS 863
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 262/436 (60%), Positives = 340/436 (77%), Gaps = 1/436 (0%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A+ +++Y+ K+LS LSNP + WN VIRG+S SKNP KSI +++++LR+G SPDH+T
Sbjct: 797 AVDATSDVNYAYKLLSKLSNPPDYGWNFVIRGFSNSKNPEKSIRVYIQILRSGFSPDHMT 856
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
YPFL K+S RL+ RE+ ++H + KTG E DLFISN+LIHMYGS D AR++FD MP
Sbjct: 857 YPFLLKSSSRLSNREIGGSLHCSVVKTGLEWDLFISNTLIHMYGSFRDKASARKLFDEMP 916
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
K V+WNS+LD YAK G++ AR VF+ M R+VV+WS++IDGYVK G+Y EAL IF++
Sbjct: 917 YKNLVTWNSILDSYAKSGDVVSARLVFDEMTMRDVVTWSSMIDGYVKSGEYNEALEIFDQ 976
Query: 186 MRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M +GS KANEVT+VSVLCACAHLG L++G+++ RY++D L LT+ LQTSLIDMYAKCG
Sbjct: 977 MMRMGSSKANEVTMVSVLCACAHLGELNRGKVVHRYILDVHLPLTVILQTSLIDMYAKCG 1036
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+I +A VF G ++D L+WNAMIGGLA HGF++ESL LF +M+ I PDEITFL L
Sbjct: 1037 SIGDAWGVFCGASVKKTDALMWNAMIGGLASHGFIRESLLLFHKMRESEIDPDEITFLCL 1096
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
L+AC+HGGLV EAW+FF SL + G PKSEHYACMVD LSRAG V +A++FI +M ++PT
Sbjct: 1097 LAACSHGGLVKEAWHFFTSLKESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMLIKPT 1156
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
S+LG+L GC+NHG L+LAE VGKKL+ELQP +DGRYVGL+NVYAI K++ AR+ REA
Sbjct: 1157 GSVLGALFNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFGAARSMREA 1216
Query: 425 METRGVKKYPGWSFVE 440
ME +GVKK G S ++
Sbjct: 1217 MEKKGVKKIAGHSIIK 1232
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 88/366 (24%), Positives = 155/366 (42%), Gaps = 36/366 (9%)
Query: 25 NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH-----LTYPFLAKASGRLAKR 79
NP I ++ +I G K K+ ++SL++++ R+G+ PD L F ++ +
Sbjct: 315 NPDIALYDVLIGGLCKHKDLEMALSLYLEIKRSGIPPDRGILGKLLCSFSEESELSRITK 374
Query: 80 ELAVAVHAQIAKTGYESDL--FISNSLIH-MYGSCGDIVYAREVFDGMPTKM-------- 128
+ + + Y+S L FI N L+H Y +++ E DGM +
Sbjct: 375 VIIGDIDTKSVMLLYKSLLEGFIRNDLVHEAYNFIQNLMGNHES-DGMSEIVKLLKDQNK 433
Query: 129 -----SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVS----WSALIDGYVKCGDYKEA 179
S S + ++D K ++NMA + + + ++ ++ +I+G K G +E+
Sbjct: 434 AILPDSDSLSIVIDCLVKANKVNMAVTLLHDIVQNGLIPSLMMYNNIIEGMCKEGRSEES 493
Query: 180 LVIFEEMRDVGSKANEVTLVSVL-C---ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
L + EM+D G + ++ TL + C C GALD +L+ M G + T
Sbjct: 494 LKLLAEMKDAGVEPSQYTLNCIYGCLAERCDFAGALD----LLKKMRFYGFEPWIKHTTC 549
Query: 236 LIDMYAKCGAIKEALIVFHGV--EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
L+ + G +A V E ++ + A I GL + V LELF + G
Sbjct: 550 LVKKLCENGKAVDACKYIDDVAGEGFLRHMVSYTAAIEGLIRNEGVDRGLELFRDTCANG 609
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAY 353
PD I + L+ A EA F + +G+ P Y M+D + G++
Sbjct: 610 HCPDVIAYHVLIKALCKACRTTEADNLFNEMVSKGLKPSVATYNSMIDGWCKEGEIDRGL 669
Query: 354 EFICQM 359
I +M
Sbjct: 670 SCIVRM 675
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 131/319 (41%), Gaps = 41/319 (12%)
Query: 26 PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKR-ELAVA 84
P + +N +I G K +S+ L +M AGV P T L G LA+R + A A
Sbjct: 472 PSLMMYNNIIEGMCKEGRSEESLKLLAEMKDAGVEPSQYT---LNCIYGCLAERCDFAGA 528
Query: 85 VH--AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+ ++ G+E + + L+ G V A + D + +G+
Sbjct: 529 LDLLKKMRFYGFEPWIKHTTCLVKKLCENGKAVDACKYIDDVAG----------EGFL-- 576
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV---TLV 199
R++VS++A I+G ++ L +F + G + + L+
Sbjct: 577 ---------------RHMVSYTAAIEGLIRNEGVDRGLELFRDTCANGHCPDVIAYHVLI 621
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL--IVFHGVE 257
LC D + M+ KGL ++ S+ID + K G I L IV +
Sbjct: 622 KALCKACRTTEADN---LFNEMVSKGLKPSVATYNSMIDGWCKEGEIDRGLSCIVRMYED 678
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+ DV+ + ++I GL E++ + EM+ P+ ITF+ L+ + G EA
Sbjct: 679 EKNPDVITYTSLIHGLCASRRPSEAISRWNEMKGKDCYPNRITFMALIQGLCNCGWSSEA 738
Query: 318 WYFFKSLGKRGMVPKSEHY 336
+F+ + ++ M P S Y
Sbjct: 739 LVYFREMEEKEMEPDSAVY 757
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/375 (20%), Positives = 152/375 (40%), Gaps = 45/375 (12%)
Query: 49 SLFVKMLRAGVS-PDHLTYPFLAKASGRL--AKRELAVAVHAQIAKTGYESDLFISNSLI 105
S+F ++ G+ P+ TY L +A + + EL A ++ G+ D F ++
Sbjct: 162 SVFDRVREMGLCVPNAYTYNCLLEAISKSNSSSVELVEARLKEMRDCGFHFDKFTLTPVL 221
Query: 106 HMYGSCGDIVYAREVFDGMPTKMSVSW------NSMLDGYAKCGEMNMARQVFELMPER- 158
+Y + G A VF+ + +S W ++ + K G+++ A ++ E++ ER
Sbjct: 222 QVYCNNGKSERALSVFNEI---LSRGWLDEHISTILVVSFCKWGQVDKAFELIEMLEERH 278
Query: 159 ---NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA--CAHLGALDQ 213
N ++ LI G+VK +A +FE+MR +G ++ L VL C H L+
Sbjct: 279 IRLNYKTFCVLIHGFVKESRIDKAFQLFEKMRRMGMNP-DIALYDVLIGGLCKH-KDLEM 336
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
+ + G+ + L+ +++ + V G +S +L++ +++ G
Sbjct: 337 ALSLYLEIKRSGIPPDRGILGKLLCSFSEESELSRITKVIIGDIDTKSVMLLYKSLLEGF 396
Query: 274 AMHGFVKESLELFTEM------------------QIVGITPDEITFLGLLSACAHGGLVM 315
+ V E+ + Q I PD + ++ V
Sbjct: 397 IRNDLVHEAYNFIQNLMGNHESDGMSEIVKLLKDQNKAILPDSDSLSIVIDCLVKANKVN 456
Query: 316 EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTASML---- 368
A + + G++P Y +++ + + G+ E+ + + +M +EP+ L
Sbjct: 457 MAVTLLHDIVQNGLIPSLMMYNNIIEGMCKEGRSEESLKLLAEMKDAGVEPSQYTLNCIY 516
Query: 369 GSLLTGCMNHGKLDL 383
G L C G LDL
Sbjct: 517 GCLAERCDFAGALDL 531
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 118/286 (41%), Gaps = 13/286 (4%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
+ I G +++ ++ + LF G PD + Y L KA + + A + ++
Sbjct: 582 YTAAIEGLIRNEGVDRGLELFRDTCANGHCPDVIAYHVLIKALCKACRTTEADNLFNEMV 641
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAR----EVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
G + + NS+I + G+I +++ +++ S++ G +
Sbjct: 642 SKGLKPSVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASRRPS 701
Query: 147 MARQVFELMPER----NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
A + M + N +++ ALI G CG EALV F EM + + + +S++
Sbjct: 702 EAISRWNEMKGKDCYPNRITFMALIQGLCNCGWSSEALVYFREMEEKEMEPDSAVYLSLV 761
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
+ + G + R M+ KG P+ + A A + + + K +
Sbjct: 762 SSFLSSENISAGFGIFREMVHKG---RFPVSVDRNYLLA-VDATSDVNYAYKLLSKLSNP 817
Query: 263 VLI-WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
WN +I G + ++S+ ++ ++ G +PD +T+ LL +
Sbjct: 818 PDYGWNFVIRGFSNSKNPEKSIRVYIQILRSGFSPDHMTYPFLLKS 863
>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 442
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 249/380 (65%), Positives = 305/380 (80%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L FSALS ++DYS K++ ++ NP F WNT+IR +S +KNPN SI++F+KML+ GVS
Sbjct: 51 LLLFSALSPARDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVS 110
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+LTYPFL KA+ +L +EL +AVH I K+G+E D FI NSLIHMY SC DI AR+V
Sbjct: 111 PDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKV 170
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD MP K V+WN+MLDGYAKCG++NMAR+VF LMPE++VVSWS+LIDGYVK Y EA+
Sbjct: 171 FDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAM 230
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+FE M G ANEVTLVS LCACAHLGAL+ GRMM RY+++ L LT+ LQTSL+DMY
Sbjct: 231 ALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMY 290
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCGAI EAL VF ++DVLIWNA+IGGLA HG +KE++ LF EM++VGI PDEIT
Sbjct: 291 AKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEIT 350
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+L LLS CAHGGLV EAWYFF L K GM+PK EHYACMVDALSRAGQV+EAY+F+CQMP
Sbjct: 351 YLCLLSCCAHGGLVEEAWYFFDCLRKHGMIPKVEHYACMVDALSRAGQVSEAYQFLCQMP 410
Query: 361 LEPTASMLGSLLTGCMNHGK 380
++PT+SMLG+LL+GCM HG
Sbjct: 411 VQPTSSMLGALLSGCMKHGN 430
>gi|296085295|emb|CBI29027.3| unnamed protein product [Vitis vinifera]
Length = 384
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/334 (73%), Positives = 282/334 (84%)
Query: 107 MYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSAL 166
MYGSCGDI AR+VFD M + SVSWN+MLDGYAKCG+++ ARQVFE MP+R+VVSWS++
Sbjct: 1 MYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSM 60
Query: 167 IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL 226
IDG VK G+Y AL IFE MR VG KANEVT+VSVLCACAHLGAL+QGR M +YM+D +
Sbjct: 61 IDGCVKGGEYGVALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTM 120
Query: 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELF 286
TL L+TSL+DMYAKCGAI+EA+ VF GV Q+DVL+WN +IGGLA HG V ESLELF
Sbjct: 121 RFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELF 180
Query: 287 TEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA 346
EMQ++GI PDEIT+L L SACAHGGLV EAW+FFKSLGK+GMVPKSEHYACMVD LSRA
Sbjct: 181 KEMQVLGIVPDEITYLCLFSACAHGGLVHEAWHFFKSLGKQGMVPKSEHYACMVDVLSRA 240
Query: 347 GQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLS 406
GQ+ EAY+FI QMP+EPTASMLG+LL GCMNH + DLAE VG+KL+EL+PDHDGRY+GLS
Sbjct: 241 GQLAEAYDFIAQMPMEPTASMLGALLNGCMNHRRFDLAERVGRKLIELEPDHDGRYIGLS 300
Query: 407 NVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
NVYA K WD AR REAME RGVKK PG+SFVE
Sbjct: 301 NVYAGVKLWDNARMMREAMERRGVKKSPGFSFVE 334
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 112/247 (45%), Gaps = 14/247 (5%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I + KV + WN ++ GY+K + + + +F M PD + +
Sbjct: 6 GDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESM------PDRDVVSWSS 59
Query: 71 KASGRLAKRE--LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
G + E +A+A+ ++ G +++ S++ G + R + M
Sbjct: 60 MIDGCVKGGEYGVALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNT 119
Query: 129 S----VSWNSMLDGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDYKEALVI 182
V S++D YAKCG + A VF +P + +V+ W+ +I G G E+L +
Sbjct: 120 MRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLEL 179
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F+EM+ +G +E+T + + ACAH G + + + + +G+ ++D+ ++
Sbjct: 180 FKEMQVLGIVPDEITYLCLFSACAHGGLVHEAWHFFKSLGKQGMVPKSEHYACMVDVLSR 239
Query: 243 CGAIKEA 249
G + EA
Sbjct: 240 AGQLAEA 246
>gi|255549842|ref|XP_002515972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544877|gb|EEF46392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/358 (68%), Positives = 288/358 (80%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+LSFSALS GNI+YSC VL L NP IF WNTVIRGYSKSKNPN SIS+F++ML+ GV
Sbjct: 52 ILSFSALSDSGNINYSCWVLFSLLNPTIFNWNTVIRGYSKSKNPNGSISVFIQMLKVGVF 111
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+LTYPFL KAS RL KREL ++HA I K G+ESD FISNSL+HMY S GDI AR V
Sbjct: 112 PDYLTYPFLVKASARLLKRELGFSIHAHIIKHGFESDRFISNSLVHMYASFGDISCARYV 171
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FDGMP K VSWNSM+DG AKCG M +ARQ+F+LMP+R+V+SWS+LIDGYVK GDY +A+
Sbjct: 172 FDGMPVKNLVSWNSMVDGSAKCGNMVLARQLFDLMPDRDVLSWSSLIDGYVKNGDYGDAM 231
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
V+F++MR G K NEVT+VSVLCACAHLGALD+GRMM Y+ID L LTL L TSL+DMY
Sbjct: 232 VVFDKMRVSGPKPNEVTMVSVLCACAHLGALDKGRMMHHYVIDNKLPLTLVLCTSLVDMY 291
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCGAI EA VF G+ SDVL+WNAMIGGLA HG VKESL+LF EM VG+ PDEIT
Sbjct: 292 AKCGAINEAFDVFRGIPAELSDVLLWNAMIGGLATHGLVKESLDLFKEMNFVGVKPDEIT 351
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
+L LL ACAHGGLV EAWYFF LGK GM K EHYAC+VD ++RAGQ+ +AY+F+ +
Sbjct: 352 YLSLLHACAHGGLVKEAWYFFDCLGKHGMTLKIEHYACIVDVMARAGQIAKAYQFLSR 409
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/368 (22%), Positives = 147/368 (39%), Gaps = 71/368 (19%)
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
G +N + V + + +W+ +I GY K + ++ +F +M VG + +T ++
Sbjct: 62 GNINYSCWVLFSLLNPTIFNWNTVIRGYSKSKNPNGSISVFIQMLKVGVFPDYLTYPFLV 121
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ-- 260
A A L + G + ++I G + SL+ MYA G I A VF G+
Sbjct: 122 KASARLLKRELGFSIHAHIIKHGFESDRFISNSLVHMYASFGDISCARYVFDGMPVKNLV 181
Query: 261 ---------------------------SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
DVL W+++I G +G +++ +F +M++ G
Sbjct: 182 SWNSMVDGSAKCGNMVLARQLFDLMPDRDVLSWSSLIDGYVKNGDYGDAMVVFDKMRVSG 241
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAY 353
P+E+T + +L ACAH G + + + + +VD ++ G + EA+
Sbjct: 242 PKPNEVTMVSVLCACAHLGALDKGRMMHHYVIDNKLPLTLVLCTSLVDMYAKCGAINEAF 301
Query: 354 EFICQMPLEPTASML-GSLLTGCMNHG--KLDLAEIVGKKLVELQPD------------H 398
+ +P E + +L +++ G HG K L V ++PD H
Sbjct: 302 DVFRGIPAELSDVLLWNAMIGGLATHGLVKESLDLFKEMNFVGVKPDEITYLSLLHACAH 361
Query: 399 DG----------------------RYVGLSNVYAIFKRWDEA-----RTTREAMETRGVK 431
G Y + +V A + +A R R+AME GV+
Sbjct: 362 GGLVKEAWYFFDCLGKHGMTLKIEHYACIVDVMARAGQIAKAYQFLSRNMRKAMERMGVR 421
Query: 432 KYPGWSFV 439
K PG+SFV
Sbjct: 422 KSPGYSFV 429
>gi|357140545|ref|XP_003571826.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Brachypodium distachyon]
Length = 489
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 231/424 (54%), Positives = 307/424 (72%), Gaps = 9/424 (2%)
Query: 23 LSNPRIFYWNTVIRGYSKSKN-PNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKREL 81
LS P + + +IR S S + P+ S SLF+ +LR+ + P HLT+PFL +A+ RLA L
Sbjct: 22 LSTPLL---DPLIRATSSSPSTPHLSFSLFLLLLRSALRPSHLTFPFLGRAAARLASPRL 78
Query: 82 AVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
A+++H+ + G DL I+NS +HMY +C AR +FD +P VSWN++LDGYA
Sbjct: 79 ALSLHSHPLRLGLLPCDLHIANSFVHMYAACALPDLARRLFDEIPRPNPVSWNALLDGYA 138
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV----GSKANEV 196
KC +++ AR+VF+ MP R+VVSWSA+IDG VKCG+Y+EAL +FE M G +AN+V
Sbjct: 139 KCRDLSAAREVFDRMPHRDVVSWSAMIDGCVKCGEYREALALFEMMEAAATGHGVRANDV 198
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
T++S+L ACAHLG L +GR M RY+ ++G L L L TSL+DMYAKCGAI EAL VF V
Sbjct: 199 TMISMLGACAHLGDLRRGRQMHRYLQERGFLLNLRLATSLVDMYAKCGAISEALEVFRAV 258
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
+DVL+WNAMIGGLA+HG E++ELF EMQ G+ PDEIT+LGLLSAC HGGLV E
Sbjct: 259 PVASTDVLMWNAMIGGLAVHGMGMETVELFQEMQHSGVVPDEITYLGLLSACVHGGLVDE 318
Query: 317 AWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
AW FF SL +G+ P EHYAC+VD LSRAG++ EAY + MP+EP+ S+LG++L C
Sbjct: 319 AWRFFCSLEAQGLRPHVEHYACLVDVLSRAGRLEEAYGVVKSMPMEPSVSVLGAILNACH 378
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436
HG ++L E+VG++LV LQPDHDGRY+GLSN+YA+ KRW EA+ R+ M RG+KK PG+
Sbjct: 379 LHGWVELGEVVGRQLVRLQPDHDGRYIGLSNIYAVAKRWQEAKKARKVMSERGLKKIPGF 438
Query: 437 SFVE 440
S ++
Sbjct: 439 SEID 442
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 158/334 (47%), Gaps = 32/334 (9%)
Query: 14 DYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS 73
D + ++ + P WN ++ GY+K ++ + + +F +M P + A
Sbjct: 113 DLARRLFDEIPRPNPVSWNALLDGYAKCRDLSAAREVFDRM------PHRDVVSWSAMID 166
Query: 74 GRLA----KRELAVAVHAQIAKTGY---ESDLFISNSLIHMYGSC---GDIVYAREVF-- 121
G + + LA+ + A TG+ +D+ ++I M G+C GD+ R++
Sbjct: 167 GCVKCGEYREALALFEMMEAAATGHGVRANDV----TMISMLGACAHLGDLRRGRQMHRY 222
Query: 122 ---DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDY 176
G + ++ S++D YAKCG ++ A +VF +P +V+ W+A+I G G
Sbjct: 223 LQERGFLLNLRLA-TSLVDMYAKCGAISEALEVFRAVPVASTDVLMWNAMIGGLAVHGMG 281
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
E + +F+EM+ G +E+T + +L AC H G +D+ + +GL + L
Sbjct: 282 METVELFQEMQHSGVVPDEITYLGLLSACVHGGLVDEAWRFFCSLEAQGLRPHVEHYACL 341
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
+D+ ++ G ++EA V + S V + A++ +HG+V+ L Q+V + P
Sbjct: 342 VDVLSRAGRLEEAYGVVKSMPMEPS-VSVLGAILNACHLHGWVE--LGEVVGRQLVRLQP 398
Query: 297 D-EITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
D + ++GL + A EA K + +RG+
Sbjct: 399 DHDGRYIGLSNIYAVAKRWQEAKKARKVMSERGL 432
>gi|326530063|dbj|BAK08311.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/385 (56%), Positives = 282/385 (73%), Gaps = 5/385 (1%)
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYES-DLFISNSLIHMYGSCGDIVYARE 119
P HLT+PFL +A+ RLA LA+++HA + G DL+++NSL+HMY +C AR
Sbjct: 58 PSHLTFPFLGRAAARLASPRLALSLHAHPLRLGLLPWDLYVANSLVHMYAACALPDLARR 117
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
+FD +P VSWN++LDGYAKC ++ AR VF MP+R+VVSWSA+IDG VKCG+++EA
Sbjct: 118 LFDEIPRPNLVSWNALLDGYAKCRDLLSARCVFNRMPQRDVVSWSAMIDGCVKCGEHREA 177
Query: 180 LVIFEEMRDVGS----KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
L +FE M G+ +AN+VT+VSVL ACAHLG L +GR M RY+ + G L L L TS
Sbjct: 178 LALFEMMEAAGAGNGVRANDVTMVSVLGACAHLGDLGRGRQMHRYLQEHGFLLNLRLATS 237
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
L+DMYAKCGAI EAL VF V +DVLIWNA+IGGLA+HG ES+E+F EMQ G+
Sbjct: 238 LVDMYAKCGAISEALEVFRAVPVTTTDVLIWNAVIGGLAVHGLSMESVEIFQEMQNSGVV 297
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
PDEIT+L LLSAC HGGLV EAW F+SL +G+ P EHYAC+VD L RAG + EAY
Sbjct: 298 PDEITYLVLLSACVHGGLVGEAWRLFRSLEVQGLRPHVEHYACLVDVLGRAGHLEEAYGV 357
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
+ MP+EP S+LG+LL C HG ++L E+VG++LV+LQPDHDGRY+GLSN+YAI +RW
Sbjct: 358 VKSMPMEPNVSVLGALLNACHLHGWVELGEVVGRQLVQLQPDHDGRYIGLSNIYAIARRW 417
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
EA+ R+ ME RGVKK PG+S ++
Sbjct: 418 QEAKKARKVMEERGVKKIPGFSEID 442
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 164/331 (49%), Gaps = 26/331 (7%)
Query: 14 DYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS 73
D + ++ + P + WN ++ GY+K ++ + +F +M + D +++ +
Sbjct: 113 DLARRLFDEIPRPNLVSWNALLDGYAKCRDLLSARCVFNRMPQR----DVVSWSAMIDGC 168
Query: 74 GRLAKRELAVAVHAQIAKTGYESDLFISN-SLIHMYGSC---GDIVYAREVF-----DGM 124
+ + A+A+ + G + + ++ +++ + G+C GD+ R++ G
Sbjct: 169 VKCGEHREALALFEMMEAAGAGNGVRANDVTMVSVLGACAHLGDLGRGRQMHRYLQEHGF 228
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDYKEALVI 182
+ ++ S++D YAKCG ++ A +VF +P +V+ W+A+I G G E++ I
Sbjct: 229 LLNLRLA-TSLVDMYAKCGAISEALEVFRAVPVTTTDVLIWNAVIGGLAVHGLSMESVEI 287
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F+EM++ G +E+T + +L AC H G + + + R + +GL + L+D+ +
Sbjct: 288 FQEMQNSGVVPDEITYLVLLSACVHGGLVGEAWRLFRSLEVQGLRPHVEHYACLVDVLGR 347
Query: 243 CGAIKEALIVFHGVEKH---QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD-E 298
G ++EA +GV K + +V + A++ +HG+V+ L Q+V + PD +
Sbjct: 348 AGHLEEA----YGVVKSMPMEPNVSVLGALLNACHLHGWVE--LGEVVGRQLVQLQPDHD 401
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
++GL + A EA K + +RG+
Sbjct: 402 GRYIGLSNIYAIARRWQEAKKARKVMEERGV 432
>gi|115482212|ref|NP_001064699.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|31432332|gb|AAP53975.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113639308|dbj|BAF26613.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|215694632|dbj|BAG89823.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768315|dbj|BAH00544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 493
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/386 (57%), Positives = 285/386 (73%), Gaps = 6/386 (1%)
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYARE 119
P HLT+PFLA+A+ RLA LA AVHAQ + G DL +SNSL+HMY +C AR
Sbjct: 60 PSHLTFPFLARAAARLATPRLARAVHAQPLRRGLLPHDLHVSNSLVHMYAACALPGLARR 119
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
+FD +P VSWN++LDGYAKC ++ AR+VF MP+R+VVSWSA+IDG VKCG+++EA
Sbjct: 120 LFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREA 179
Query: 180 LVIFEEM-----RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT 234
L +FE M R G +AN+VT+VSVL ACAHLG L +GR M RY+ + G L + L T
Sbjct: 180 LAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNIRLAT 239
Query: 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
SL+DMYAKCGAI EAL VF V +DVLIWNA+IGGLA+HG +ESL++F +M+ G+
Sbjct: 240 SLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGV 299
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
PDEIT+L LLSAC HGGLV EAW FF+SL +G+ P EHYAC+VD L RAG++ EAY
Sbjct: 300 VPDEITYLSLLSACVHGGLVDEAWSFFRSLEAQGLRPHVEHYACLVDVLGRAGRLEEAYG 359
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414
+ MP++P+ S+LG+LL C HG ++L E VG++LV LQPDHDGRY+GLSN+YA+ +R
Sbjct: 360 VVKSMPMKPSVSVLGALLNACHLHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIYAVARR 419
Query: 415 WDEARTTREAMETRGVKKYPGWSFVE 440
W EA+ R+ ME RGVKK PG+S ++
Sbjct: 420 WQEAKKARKVMEERGVKKVPGFSEID 445
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 159/325 (48%), Gaps = 21/325 (6%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
++ + P WN ++ GY+K ++ + +F +M + V +++ + +
Sbjct: 119 RLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDV----VSWSAMIDGCVKCG 174
Query: 78 KRELAVAVHAQIAKTGYESDLFISN--SLIHMYGSC---GDIVYAREVF-----DGMPTK 127
+ A+AV + T D +N +++ + G+C GD+V R++ G P
Sbjct: 175 EHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLN 234
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERN--VVSWSALIDGYVKCGDYKEALVIFEE 185
+ ++ S++D YAKCG + A +VF+ +P N V+ W+A+I G G +E+L +F++
Sbjct: 235 IRLA-TSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQK 293
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M G +E+T +S+L AC H G +D+ R + +GL + L+D+ + G
Sbjct: 294 MEHAGVVPDEITYLSLLSACVHGGLVDEAWSFFRSLEAQGLRPHVEHYACLVDVLGRAGR 353
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD-EITFLGL 304
++EA V + S V + A++ +HG+V+ L Q+V + PD + ++GL
Sbjct: 354 LEEAYGVVKSMPMKPS-VSVLGALLNACHLHGWVE--LGEAVGRQLVHLQPDHDGRYIGL 410
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGM 329
+ A EA K + +RG+
Sbjct: 411 SNIYAVARRWQEAKKARKVMEERGV 435
>gi|125532120|gb|EAY78685.1| hypothetical protein OsI_33787 [Oryza sativa Indica Group]
Length = 493
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/386 (57%), Positives = 285/386 (73%), Gaps = 6/386 (1%)
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYARE 119
P HLT+PFLA+A+ RLA LA AVHAQ + G DL +SNSL+HMY +C AR
Sbjct: 60 PSHLTFPFLARAAARLASPRLARAVHAQPLRRGLLPQDLHVSNSLVHMYAACALPGLARR 119
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
+FD +P VSWN++LDGYAKC ++ AR+VF MP+R+VVSWSA+IDG VKCG+++EA
Sbjct: 120 LFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREA 179
Query: 180 LVIFEEM-----RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT 234
L +FE M R G +AN+VT+VSVL ACAHLG L +GR M RY+ + G L + L T
Sbjct: 180 LAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNIRLAT 239
Query: 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
SL+DMYAKCGAI EAL VFH V +DVLIWNA+IGGLA+HG +ESL++F +M+ G+
Sbjct: 240 SLVDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGV 299
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
PDEIT+L LLSAC HGGLV EAW FF+SL + + P EHYAC+VD L RAG++ EAY
Sbjct: 300 VPDEITYLCLLSACVHGGLVDEAWRFFRSLEAQRLRPHVEHYACLVDVLGRAGRLEEAYG 359
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414
+ MP++P+ S+LG+LL C HG ++L E VG++LV LQPDHDGRY+GLSN+YA+ +R
Sbjct: 360 VVKSMPMKPSVSVLGALLNACHIHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIYAVARR 419
Query: 415 WDEARTTREAMETRGVKKYPGWSFVE 440
W EA+ R+ ME RGVKK PG+S ++
Sbjct: 420 WQEAKKARKVMEERGVKKVPGFSEID 445
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 156/325 (48%), Gaps = 21/325 (6%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
++ + P WN ++ GY+K ++ + +F +M + V +++ + +
Sbjct: 119 RLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDV----VSWSAMIDGCVKCG 174
Query: 78 KRELAVAVHAQIAKTGYESDLFISN--SLIHMYGSC---GDIVYAREVF-----DGMPTK 127
+ A+AV + T D +N +++ + G+C GD+V R++ G P
Sbjct: 175 EHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLN 234
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ ++ S++D YAKCG + A +VF +P +V+ W+A+I G G +E+L +F++
Sbjct: 235 IRLA-TSLVDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQK 293
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M G +E+T + +L AC H G +D+ R + + L + L+D+ + G
Sbjct: 294 MEHAGVVPDEITYLCLLSACVHGGLVDEAWRFFRSLEAQRLRPHVEHYACLVDVLGRAGR 353
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD-EITFLGL 304
++EA V + S V + A++ +HG+V+ L Q+V + PD + ++GL
Sbjct: 354 LEEAYGVVKSMPMKPS-VSVLGALLNACHIHGWVE--LGEAVGRQLVHLQPDHDGRYIGL 410
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGM 329
+ A EA K + +RG+
Sbjct: 411 SNIYAVARRWQEAKKARKVMEERGV 435
>gi|414864742|tpg|DAA43299.1| TPA: hypothetical protein ZEAMMB73_867482 [Zea mays]
Length = 501
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/422 (52%), Positives = 304/422 (72%), Gaps = 13/422 (3%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK 91
+ +IR S S P+ S S+F+ +LR+ + P H T+PFLA+A+ RL+ LA A+HA +
Sbjct: 30 DHLIRSTSSSPFPSLSFSVFILLLRSSLRPSHFTFPFLARAAARLSSASLASALHAHPLR 89
Query: 92 TGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
G +DL ++NSL+HMY +C +A VFD +P VSWN++LDGYAKC ++ AR+
Sbjct: 90 LGLLPADLHVANSLVHMYAACALPDHANRVFDEIPRPNLVSWNALLDGYAKCHDLPAARK 149
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV------------GSKANEVTL 198
VF MP+R+VVSWSA+IDG VKCG+++EAL +FE M + G++AN+VT+
Sbjct: 150 VFARMPQRDVVSWSAMIDGCVKCGEHREALALFEMMENAAARSAEEEDGGGGARANDVTM 209
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
VSVL ACA LG L++GR R + ++G +L L L TSL+DMYAKCGAI EA+ VF V
Sbjct: 210 VSVLGACAQLGDLERGRRAHRCLRERGFALNLRLATSLVDMYAKCGAISEAMEVFWAVPV 269
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
+DVLIWNA+IGGLA+HG +S+E+F EMQ G+ PDEIT+L LLSACAHGGLV EAW
Sbjct: 270 ESTDVLIWNAVIGGLAVHGMATKSVEIFLEMQRAGVAPDEITYLCLLSACAHGGLVDEAW 329
Query: 319 YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNH 378
FF+SL +G+ P EHYAC+VD L RAG++ E Y + MP++P+ S+LG+LL C H
Sbjct: 330 EFFRSLEAQGLRPHVEHYACLVDVLGRAGRLEEVYGVVKSMPMKPSVSVLGALLNACHLH 389
Query: 379 GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSF 438
G ++L E++G++LV+LQPDHDGRY+GLSN+YA+ +RW EA+ R+ ME RGVKK PG+S
Sbjct: 390 GWVELGEVLGRRLVQLQPDHDGRYIGLSNIYAVARRWQEAKKARKVMEDRGVKKVPGFSE 449
Query: 439 VE 440
++
Sbjct: 450 ID 451
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 156/336 (46%), Gaps = 28/336 (8%)
Query: 14 DYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS 73
D++ +V + P + WN ++ GY+K + + +F +M + V +++ +
Sbjct: 114 DHANRVFDEIPRPNLVSWNALLDGYAKCHDLPAARKVFARMPQRDV----VSWSAMIDGC 169
Query: 74 GRLAKRELAVAVHAQI----AKTGYESD-----LFISNSLIHMYGSC---GDIVYAREVF 121
+ + A+A+ + A++ E D +++ + G+C GD+ R
Sbjct: 170 VKCGEHREALALFEMMENAAARSAEEEDGGGGARANDVTMVSVLGACAQLGDLERGRRAH 229
Query: 122 -----DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCG 174
G + ++ S++D YAKCG ++ A +VF +P +V+ W+A+I G G
Sbjct: 230 RCLRERGFALNLRLA-TSLVDMYAKCGAISEAMEVFWAVPVESTDVLIWNAVIGGLAVHG 288
Query: 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT 234
+++ IF EM+ G +E+T + +L ACAH G +D+ R + +GL +
Sbjct: 289 MATKSVEIFLEMQRAGVAPDEITYLCLLSACAHGGLVDEAWEFFRSLEAQGLRPHVEHYA 348
Query: 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
L+D+ + G ++E V + S V + A++ +HG+V+ L ++V +
Sbjct: 349 CLVDVLGRAGRLEEVYGVVKSMPMKPS-VSVLGALLNACHLHGWVE--LGEVLGRRLVQL 405
Query: 295 TPD-EITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
PD + ++GL + A EA K + RG+
Sbjct: 406 QPDHDGRYIGLSNIYAVARRWQEAKKARKVMEDRGV 441
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 8/171 (4%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ WN VI G + KS+ +F++M RAGV+PD +TY L A + A
Sbjct: 274 VLIWNAVIGGLAVHGMATKSVEIFLEMQRAGVAPDEITYLCLLSACAHGGLVDEAWEFFR 333
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS-----WNSM-LDGYAK 141
+ G + L+ + G G + V MP K SVS N+ L G+ +
Sbjct: 334 SLEAQGLRPHVEHYACLVDVLGRAGRLEEVYGVVKSMPMKPSVSVLGALLNACHLHGWVE 393
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
GE+ + R++ +L P+ + + L + Y ++EA + M D G K
Sbjct: 394 LGEV-LGRRLVQLQPDHD-GRYIGLSNIYAVARRWQEAKKARKVMEDRGVK 442
>gi|242042285|ref|XP_002468537.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
gi|241922391|gb|EER95535.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
Length = 495
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/397 (54%), Positives = 289/397 (72%), Gaps = 11/397 (2%)
Query: 52 VKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYGS 110
+ +LR+ + P H T+PFLA+A+ RL+ LA A+HA + G +DL ++NSL+HMY +
Sbjct: 48 IHLLRSSLRPSHFTFPFLARAAARLSSASLAAALHAHPLRLGLLPADLHVANSLVHMYAA 107
Query: 111 CGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGY 170
C +A VFD +P VSWN++LDGYAKC ++ ARQVF MP+R+VVSWSA+IDG
Sbjct: 108 CAMPDHAHRVFDEIPRPNLVSWNALLDGYAKCRDLPAARQVFARMPQRDVVSWSAMIDGC 167
Query: 171 VKCGDYKEALVIFEEMRDV----------GSKANEVTLVSVLCACAHLGALDQGRMMLRY 220
VKCG+++EAL +FE M + G++AN+VT+VSVL ACA+LG L++GR + R
Sbjct: 168 VKCGEHREALALFEMMENAAARSVEDGGGGARANDVTMVSVLGACANLGDLERGRWVHRC 227
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+ ++G L L L TSL+DMYAKCGAI EAL +F V +DVLIWNA+IGGLA+HG
Sbjct: 228 LRERGFPLNLKLATSLVDMYAKCGAIHEALEMFWAVPVESTDVLIWNAVIGGLAVHGMAT 287
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMV 340
ES+E+F EMQ G+ PDEIT+L LLSAC HGGLV EAW FF+SL +G+ P EHYAC+V
Sbjct: 288 ESVEIFQEMQCAGVAPDEITYLCLLSACVHGGLVDEAWKFFRSLEAQGLRPHVEHYACLV 347
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400
D L RAG++ E Y + MP++P+ S+LG+ L C HG ++L E+VG++LV+LQPDHDG
Sbjct: 348 DVLGRAGRLEEVYGVVKSMPMKPSVSVLGAFLNACHLHGWVELGEVVGRQLVQLQPDHDG 407
Query: 401 RYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
RY+GLSN+YA+ +RW EA+ R+ ME RGVKK PG+S
Sbjct: 408 RYIGLSNIYAVARRWQEAKKARKVMEDRGVKKVPGFS 444
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 156/334 (46%), Gaps = 26/334 (7%)
Query: 14 DYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS 73
D++ +V + P + WN ++ GY+K ++ + +F +M + V +++ +
Sbjct: 112 DHAHRVFDEIPRPNLVSWNALLDGYAKCRDLPAARQVFARMPQRDV----VSWSAMIDGC 167
Query: 74 GRLAKRELAVAVH-------AQIAKTGYESDLFISNSLIHMYGSC---GDIVYAREVF-- 121
+ + A+A+ A+ + G +++ + G+C GD+ R V
Sbjct: 168 VKCGEHREALALFEMMENAAARSVEDGGGGARANDVTMVSVLGACANLGDLERGRWVHRC 227
Query: 122 ---DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDY 176
G P + ++ S++D YAKCG ++ A ++F +P +V+ W+A+I G G
Sbjct: 228 LRERGFPLNLKLA-TSLVDMYAKCGAIHEALEMFWAVPVESTDVLIWNAVIGGLAVHGMA 286
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
E++ IF+EM+ G +E+T + +L AC H G +D+ R + +GL + L
Sbjct: 287 TESVEIFQEMQCAGVAPDEITYLCLLSACVHGGLVDEAWKFFRSLEAQGLRPHVEHYACL 346
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
+D+ + G ++E V + S V + A + +HG+V+ L Q+V + P
Sbjct: 347 VDVLGRAGRLEEVYGVVKSMPMKPS-VSVLGAFLNACHLHGWVE--LGEVVGRQLVQLQP 403
Query: 297 D-EITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
D + ++GL + A EA K + RG+
Sbjct: 404 DHDGRYIGLSNIYAVARRWQEAKKARKVMEDRGV 437
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 8/171 (4%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ WN VI G + +S+ +F +M AGV+PD +TY L A + A
Sbjct: 270 VLIWNAVIGGLAVHGMATESVEIFQEMQCAGVAPDEITYLCLLSACVHGGLVDEAWKFFR 329
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS-----WNSM-LDGYAK 141
+ G + L+ + G G + V MP K SVS N+ L G+ +
Sbjct: 330 SLEAQGLRPHVEHYACLVDVLGRAGRLEEVYGVVKSMPMKPSVSVLGAFLNACHLHGWVE 389
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
GE+ + RQ+ +L P+ + + L + Y ++EA + M D G K
Sbjct: 390 LGEV-VGRQLVQLQPDHD-GRYIGLSNIYAVARRWQEAKKARKVMEDRGVK 438
>gi|125574942|gb|EAZ16226.1| hypothetical protein OsJ_31678 [Oryza sativa Japonica Group]
Length = 387
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/339 (57%), Positives = 252/339 (74%), Gaps = 5/339 (1%)
Query: 107 MYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSAL 166
MY +C AR +FD +P VSWN++LDGYAKC ++ AR+VF MP+R+VVSWSA+
Sbjct: 1 MYAACALPGLARRLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAM 60
Query: 167 IDGYVKCGDYKEALVIFEEM-----RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
IDG VKCG+++EAL +FE M R G +AN+VT+VSVL ACAHLG L +GR M RY+
Sbjct: 61 IDGCVKCGEHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYL 120
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
+ G L + L TSL+DMYAKCGAI EAL VF V +DVLIWNA+IGGLA+HG +E
Sbjct: 121 EEHGFPLNIRLATSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRE 180
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
SL++F +M+ G+ PDEIT+L LLSAC HGGLV EAW FF+SL +G+ P EHYAC+VD
Sbjct: 181 SLQMFQKMEHAGVVPDEITYLSLLSACVHGGLVDEAWSFFRSLEAQGLRPHVEHYACLVD 240
Query: 342 ALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR 401
L RAG++ EAY + MP++P+ S+LG+LL C HG ++L E VG++LV LQPDHDGR
Sbjct: 241 VLGRAGRLEEAYGVVKSMPMKPSVSVLGALLNACHLHGWVELGEAVGRQLVHLQPDHDGR 300
Query: 402 YVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
Y+GLSN+YA+ +RW EA+ R+ ME RGVKK PG+S ++
Sbjct: 301 YIGLSNIYAVARRWQEAKKARKVMEERGVKKVPGFSEID 339
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 159/325 (48%), Gaps = 21/325 (6%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
++ + P WN ++ GY+K ++ + +F +M + V +++ + +
Sbjct: 13 RLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDV----VSWSAMIDGCVKCG 68
Query: 78 KRELAVAVHAQIAKTGYESDLFISN--SLIHMYGSC---GDIVYAREVF-----DGMPTK 127
+ A+AV + T D +N +++ + G+C GD+V R++ G P
Sbjct: 69 EHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLN 128
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERN--VVSWSALIDGYVKCGDYKEALVIFEE 185
+ ++ S++D YAKCG + A +VF+ +P N V+ W+A+I G G +E+L +F++
Sbjct: 129 IRLA-TSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQK 187
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M G +E+T +S+L AC H G +D+ R + +GL + L+D+ + G
Sbjct: 188 MEHAGVVPDEITYLSLLSACVHGGLVDEAWSFFRSLEAQGLRPHVEHYACLVDVLGRAGR 247
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD-EITFLGL 304
++EA V + S V + A++ +HG+V+ L Q+V + PD + ++GL
Sbjct: 248 LEEAYGVVKSMPMKPS-VSVLGALLNACHLHGWVE--LGEAVGRQLVHLQPDHDGRYIGL 304
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGM 329
+ A EA K + +RG+
Sbjct: 305 SNIYAVARRWQEAKKARKVMEERGV 329
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/427 (45%), Positives = 279/427 (65%), Gaps = 3/427 (0%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y+ + HL NP +N++IR S SK P +++ L+ ML++G+ PDH+TYPF+ KA
Sbjct: 118 YAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACN 177
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
+ + VH + K+G+E D +I +SLIH+Y + D+ A+++F+ + VSWN+
Sbjct: 178 ESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNA 237
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
M+DGY K EM AR VF+ M R+V+SW+ +I+GY CG EAL +F++MR VG K
Sbjct: 238 MIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPT 297
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
E T+VS+L ACAHLGALD+G + Y+ D + + + T+L+DMYAKCG I A VF+
Sbjct: 298 EATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFN 357
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
+E DVL WN +I G+A+HG VKE+ +LF EM+ G+ P++ITF+ +LSAC+H G+V
Sbjct: 358 AME--SKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMV 415
Query: 315 MEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
E + G+ PK EHY C++D L+RAG + EA E I MP+EP S LG+LL
Sbjct: 416 DEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLG 475
Query: 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
GC HG +L E+VGK+L+ LQP H GRY+ LSN+YA K+WD+AR R M+ G+ K
Sbjct: 476 GCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKV 535
Query: 434 PGWSFVE 440
PG S +E
Sbjct: 536 PGVSVIE 542
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/429 (43%), Positives = 280/429 (65%), Gaps = 3/429 (0%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
IDY+ ++ S + NP +F +N +IRG+S SKNP+++ +V+ R G+ PD+LT+PFL K+
Sbjct: 69 IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 128
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+L + H I K G+E D+++ NSL+HMY + GD A +F M VSW
Sbjct: 129 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSW 188
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
SM+ G+ KCG++ AR++F+ MPE+N+V+WS +I GY + + +A+ +F+ ++ G +
Sbjct: 189 TSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
ANE +VSV+ +CAHLGAL+ G Y++ G++L L L T+L+DMYA+CG+I +A+ V
Sbjct: 249 ANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWV 308
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F + + D L W A+I GLAMHG+ + SL+ F M G+TP +ITF +LSAC+HGG
Sbjct: 309 FEDLP--ERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGG 366
Query: 313 LVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
LV + F+S+ + V P+ EHY CMVD L RAG++ EA F+ +MP++P A + G+L
Sbjct: 367 LVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGAL 426
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
L C H ++ E VGK L++L P H G YV LSN+YA K W++ R+ M+ +G+K
Sbjct: 427 LGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLK 486
Query: 432 KYPGWSFVE 440
K PG S +E
Sbjct: 487 KPPGHSLIE 495
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 37/269 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+++ + K+ + + W+T+I GY+++ + +K++ LF + GV + +
Sbjct: 199 GDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVI 258
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ L EL H + K G +L + +L+ MY CG I A VF+ +P + ++
Sbjct: 259 SSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTL 318
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW +ALI G G + +L F M + G
Sbjct: 319 SW-------------------------------TALIAGLAMHGYSERSLKYFATMVEAG 347
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
++T +VL AC+H G +++G + M D + L ++D+ + G ++EA
Sbjct: 348 LTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEA 407
Query: 250 --LIVFHGVEKHQSDVLIWNAMIGGLAMH 276
++ V + + +W A++G +H
Sbjct: 408 ERFVLKMPV---KPNAPVWGALLGACRIH 433
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/441 (41%), Positives = 282/441 (63%), Gaps = 3/441 (0%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++F S + Y+ +V S + NP +F +N +IRG S S+NP S ++K LR G+
Sbjct: 55 LIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLL 114
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD++T+PFL KA +L + + H Q K G+E D ++ NSL+HMY S GDI AR V
Sbjct: 115 PDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSV 174
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
F M VSW M+ GY +CG+ AR++F+ MPERN+V+WS +I GY + +++A+
Sbjct: 175 FQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAV 234
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
FE ++ G ANE +V V+ +CAHLGAL G Y++ LSL L L T+++DMY
Sbjct: 235 ETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMY 294
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
A+CG +++A++VF + + DVL W A+I GLAMHG+ +++L F+EM G P +IT
Sbjct: 295 ARCGNVEKAVMVFEQLP--EKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDIT 352
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F +L+AC+H G+V F+S+ + G+ P+ EHY CMVD L RAG++ +A +F+ +M
Sbjct: 353 FTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKM 412
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P++P A + +LL C H +++ E VGK L+E+QP++ G YV LSN+YA +W +
Sbjct: 413 PVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVT 472
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R+ M+ +GV+K PG+S +E
Sbjct: 473 VMRQMMKDKGVRKPPGYSLIE 493
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/440 (43%), Positives = 279/440 (63%), Gaps = 3/440 (0%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+F A G++ Y+ V + P F WNT+IRGYS SK P +++ L+ ML V
Sbjct: 56 LLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVP 115
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
+ T+PFL KA ++ E +HA I K G+ S+++ +NSL+++Y GDI AR +
Sbjct: 116 HNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLL 175
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD + + +VSWNSM+DGY KCGE+ MA ++F MPERN++SW+++I G V G KEAL
Sbjct: 176 FDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEAL 235
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F M+ G K + V LVS L ACA LG LDQG+ + Y+ + + L LIDMY
Sbjct: 236 NLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMY 295
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG ++EA+ VF +E + V +W AMI G A+HG +E+LE F +MQ G+ P+++T
Sbjct: 296 AKCGDLEEAIEVFRKME--EKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMT 353
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F G+L+AC+H GLV EA F+S+ + G P EHY CMVD L RAG + EA E I M
Sbjct: 354 FTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENM 413
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P++P A++ G+LL C HG L+L + +GK L+++ P H GRY+ L++++A W++A
Sbjct: 414 PVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAA 473
Query: 420 TTREAMETRGVKKYPGWSFV 439
R M+ +GV K PG S +
Sbjct: 474 RVRRQMKEQGVSKLPGCSVI 493
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/440 (43%), Positives = 279/440 (63%), Gaps = 3/440 (0%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+F A G++ Y+ V + P F WNT+IRGYS SK P +++ L+ ML V
Sbjct: 56 LLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVP 115
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
+ T+PFL KA ++ E +HA I K G+ S+++ +NSL+++Y GDI AR +
Sbjct: 116 HNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLL 175
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD + + +VSWNSM+DGY KCGE+ MA ++F MPERN++SW+++I G V G KEAL
Sbjct: 176 FDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEAL 235
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F M+ G K + V LVS L ACA LG LDQG+ + Y+ + + L LIDMY
Sbjct: 236 NLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMY 295
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG ++EA+ VF +E + V +W AMI G A+HG +E+LE F +MQ G+ P+++T
Sbjct: 296 AKCGDLEEAIEVFRKME--EKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMT 353
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F G+L+AC+H GLV EA F+S+ + G P EHY CMVD L RAG + EA E I M
Sbjct: 354 FTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENM 413
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P++P A++ G+LL C HG L+L + +GK L+++ P H GRY+ L++++A W++A
Sbjct: 414 PVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAA 473
Query: 420 TTREAMETRGVKKYPGWSFV 439
R M+ +GV K PG S +
Sbjct: 474 RVRRQMKEQGVSKLPGCSVI 493
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/442 (44%), Positives = 283/442 (64%), Gaps = 4/442 (0%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+LSF+ALS G+I Y+ + + P IF NT+IR Y+ S NP ++ + +M + V
Sbjct: 73 ILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVV 132
Query: 61 -PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
PD T+P L KA + L A+H+ + K G+ S++ +SN L+ MY SCG I A
Sbjct: 133 FPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGL 192
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD P SWN M+ GY KCG AR++FE MP+R+VVSWS +I+GYV+ +KE
Sbjct: 193 VFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEG 252
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F++M + NE LV+ L ACAHLGA++QG+ + RYM K + LT+ L T+LIDM
Sbjct: 253 LGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDM 312
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y+KCG+++ AL VFH ++ + +VL W+AMI GLA++G K++L LF++M++ G+ P+E+
Sbjct: 313 YSKCGSVERALEVFHKMK--EKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEV 370
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
TF+G+L+AC+H LV E FF S+ G+ P + H+ CMVD RAG + +A I
Sbjct: 371 TFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKS 430
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP +P +++ G+LL C HG +L E VGK+L+EL P+H GRYV LSN+YA RWD
Sbjct: 431 MPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRV 490
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R M R V K PG SF++
Sbjct: 491 AELRRMMRERQVSKTPGCSFID 512
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/429 (42%), Positives = 278/429 (64%), Gaps = 3/429 (0%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+DY+ +V + NP +F +N+ IRG+S SK+P+KS +V+ R G+ PD+LTYPFL KA
Sbjct: 63 LDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKA 122
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+ ++ + H QI + G++SD+++ NSL+ MY + GDI A VF + VSW
Sbjct: 123 CTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSW 182
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
SM+ GY K G++ AR++F+ MPE+N+V+WS +I GY K + +A+ ++ ++ G
Sbjct: 183 TSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVH 242
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
ANE +VSV+ +CAHLGAL+ G Y++ +++ L L T+L+DMYA+CG+I +A+ V
Sbjct: 243 ANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWV 302
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F + D L W +I G AMHG+ +++LE F+ M+ G+TP EITF +LSAC+HGG
Sbjct: 303 FDQLPGR--DALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGG 360
Query: 313 LVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
LV F+S+ + + P+ EHY CMVD L RAG++ EA +F+ +MP++P A + G+L
Sbjct: 361 LVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGAL 420
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
L C H ++AE GK L+EL+P+H G YV LSN+YA +W+ R+ M+ RGV
Sbjct: 421 LGACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVV 480
Query: 432 KYPGWSFVE 440
K PG++ E
Sbjct: 481 KPPGYTLFE 489
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 113/267 (42%), Gaps = 33/267 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + K+ + + W+ +I GY+K+ +K+I L+ + GV + +
Sbjct: 193 GDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVI 252
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ L EL H I + +L + +L+ MY CG I A VFD +P + ++
Sbjct: 253 ASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDAL 312
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW +++ G+A + GY ++AL F M G
Sbjct: 313 SWTTLIAGFA--------------------------MHGYA-----EKALEYFSRMEKAG 341
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
E+T +VL AC+H G +++G + M D + L ++D+ + G + EA
Sbjct: 342 LTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEA 401
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMH 276
F + + IW A++G +H
Sbjct: 402 E-KFVNEMPMKPNAPIWGALLGACRIH 427
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 126/324 (38%), Gaps = 61/324 (18%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+HA + + D+F ++ LI S+S N L YA
Sbjct: 34 IHAHLIRAHTIFDVFAASCLI-----------------------SISINKNLLDYAA--- 67
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
QVF + N+ +++ I G+ D ++ + + + G + +T ++ A
Sbjct: 68 -----QVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKA 122
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV-------- 256
C G+LD G +I G + +Q SL+ MY+ G IK A VF +
Sbjct: 123 CTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSW 182
Query: 257 ---------------------EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
+ + +++ W+ MI G A + F +++EL+ +Q G+
Sbjct: 183 TSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVH 242
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
+E + ++++CAH G + + + M +VD +R G + +A
Sbjct: 243 ANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWV 302
Query: 356 ICQMPLEPTASMLGSLLTGCMNHG 379
Q+P S +L+ G HG
Sbjct: 303 FDQLPGRDALSWT-TLIAGFAMHG 325
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/489 (40%), Positives = 290/489 (59%), Gaps = 65/489 (13%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y+ + HL NP +N++IR S SK P +++ L+ ML++G+ PDH+TYPF+ KA
Sbjct: 147 YAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACN 206
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYG---------------SCGDIV---- 115
+ + VH + K+G+E D +I +SLIH+Y S D+V
Sbjct: 207 ESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNA 266
Query: 116 ------------YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSW 163
+AR VFD M + +SWN+M++GYA G+++ A+++F+ MPERN+VSW
Sbjct: 267 MIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSW 326
Query: 164 SALIDGYVKCGDYK-------------------------------EALVIFEEMRDVGSK 192
++++ G+VKCG+ + EAL +F++MR VG K
Sbjct: 327 NSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVK 386
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
E T+VS+L ACAHLGALD+G + Y+ D + + + T+L+DMYAKCG I A V
Sbjct: 387 PTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQV 446
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F+ +E DVL WN +I G+A+HG VKE+ +LF EM+ G+ P++ITF+ +LSAC+H G
Sbjct: 447 FNAME--SKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAG 504
Query: 313 LVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
+V E + G+ PK EHY C++D L+RAG + EA E I MP+EP S LG+L
Sbjct: 505 MVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGAL 564
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
L GC HG +L E+VGK+L+ LQP H GRY+ LSN+YA K+WD+AR R M+ G+
Sbjct: 565 LGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGIS 624
Query: 432 KYPGWSFVE 440
K PG S +E
Sbjct: 625 KVPGVSVIE 633
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/430 (43%), Positives = 277/430 (64%), Gaps = 12/430 (2%)
Query: 22 HLSNPRI--FYWNTVIRGYSKSK----NPNKS-ISLFVKMLRAGVSPDHLTYPFLAKASG 74
H S+P + F WNT+IR + +++ P S IS+FV+M GV PD T+PFL ++
Sbjct: 16 HFSHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFA 75
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
+ L +VHAQI + G D F+ SLI MY SCG++ +AR+VFD +P SWNS
Sbjct: 76 SPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNS 135
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG---S 191
+++ + G ++MAR +F +MPERNV+SWS +I+GYV+CG YKEAL +F EM+ +G
Sbjct: 136 IINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDV 195
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ NE T+ VL AC LGAL+ G+ Y+ G+ + + L T+LIDMYAKCG++++A
Sbjct: 196 RPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATW 255
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF + ++ DV+ W+AMI GLAMHG +E + LF++M G+ P+ +TFL + AC HG
Sbjct: 256 VFSNLGPNK-DVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHG 314
Query: 312 GLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GLV E + + + + ++P +HY CMVD RAG++ EA+ + MP+EP + G+
Sbjct: 315 GLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGA 374
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL+G HG ++ E+ KKL+EL+P + G YV LSNVYA RW++ R R+ MET G+
Sbjct: 375 LLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGI 434
Query: 431 KKYPGWSFVE 440
KK PG S +E
Sbjct: 435 KKVPGCSLIE 444
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 135/317 (42%), Gaps = 69/317 (21%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTV------------------------------ 34
S S GN+ ++ +V + P + WN++
Sbjct: 107 SMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSC 166
Query: 35 -IRGYSKSKNPNKSISLFVKMLRAGVS---PDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
I GY + ++++LF +M GV+ P+ T + A GRL E HA I
Sbjct: 167 MINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYID 226
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM-PTKMSVSWNSMLDGYAKCGEMNMAR 149
K G D+ + +LI MY CG + A VF + P K ++W++M+ G A G
Sbjct: 227 KCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLA---- 282
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
+E + +F +M + G + N VT ++V CAC H G
Sbjct: 283 ---------------------------EECVGLFSKMINQGVRPNAVTFLAVFCACVHGG 315
Query: 210 ALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
+ +G+ LR M D + T+ ++D+Y + G IKEA V + + DVL+W A
Sbjct: 316 LVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPM-EPDVLVWGA 374
Query: 269 MIGGLAMHGFVKESLEL 285
++ G MHG + E+ EL
Sbjct: 375 LLSGSRMHGDI-ETCEL 390
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/440 (41%), Positives = 275/440 (62%), Gaps = 3/440 (0%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+ A N+ Y+ V +S+P WNT+IR YS S +P +++ L+ +ML +
Sbjct: 49 LLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIP 108
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
+ T+PFL KA L+ +H QI K G+ S+++ +NSL+ +Y G I A +
Sbjct: 109 HNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVL 168
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD +P++ VSWN+M+DGY KCG + MA ++F+ MPE+NV+SW+++I G+V+ G +KEAL
Sbjct: 169 FDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEAL 228
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+ ++M G K +++TL L ACA LGAL+QG+ + Y+ + + L +LIDMY
Sbjct: 229 CLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMY 288
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
KCG +K+AL+VF +EK V W A+IGG A+HG E+L+ FT+MQ GI P T
Sbjct: 289 VKCGEMKKALLVFSKLEK--KCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFT 346
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F +L+AC+H GLV E F+S+ M P EHY CMVD L RAG + EA EF+ M
Sbjct: 347 FTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESM 406
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P++P A++ GSLL C H L+L + +GK L+EL P+HDGRY+ L++++A WDEA
Sbjct: 407 PIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELDPEHDGRYIHLASIHAAAGEWDEAS 466
Query: 420 TTREAMETRGVKKYPGWSFV 439
R ++ +G+ PG S +
Sbjct: 467 QVRSHIKNKGLLNLPGCSTI 486
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/429 (40%), Positives = 281/429 (65%), Gaps = 3/429 (0%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+ Y+ + S + NP +F +N +IR +S P+K+ + +ML++ + PD++T+PFL KA
Sbjct: 69 LGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 128
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
S + + H+QI + G+++D+++ NSL+HMY +CG I A +F MP + VSW
Sbjct: 129 STEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSW 188
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
SM+ GY KCG + AR++F+ MP RN+ +WS +I+GY K +++A+ +FE M+ G
Sbjct: 189 TSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVV 248
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
ANE +VSV+ +CAHLGAL+ G Y++ +++ L L T+L+DMY +CG I++A+ V
Sbjct: 249 ANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRV 308
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F E D L W+++I GLA+HG +++ F++M +G +P +IT +LSAC+HGG
Sbjct: 309 FE--ELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGG 366
Query: 313 LVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
LV + ++++ + G+ P+ EHY C+VD L RAG++ EA FI +MP++P A +LG+L
Sbjct: 367 LVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGAL 426
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
L C + ++AE VG L+E++P+H G YV LSN+YA +W++ + R+ M+ + VK
Sbjct: 427 LGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVK 486
Query: 432 KYPGWSFVE 440
K PGWS +E
Sbjct: 487 KPPGWSLIE 495
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 32/240 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + ++ + + +F W+ +I GY+K+ K+I LF M R GV + +
Sbjct: 199 GMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVI 258
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ L E H + K+ +L + +L+ MY CG+I A VF+ +P K S+
Sbjct: 259 SSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSL 318
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW+S++ G A G + +A+ F +M +G
Sbjct: 319 SWSSIIKGLAVHGHAH-------------------------------KAIHYFSQMVRLG 347
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
++TL +VL AC+H G +D+G + M D G+ L ++DM + G + EA
Sbjct: 348 FSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEA 407
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 195/471 (41%), Positives = 286/471 (60%), Gaps = 40/471 (8%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A++ G I+Y+ +V + ++ P IF WNT++RG S+SKNP+K + L+ +M GV PD T
Sbjct: 56 AMTISGAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFT 115
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV---------- 115
+ FL K RL R+ VH ++ K G+E + F+ N+LI+ + +CGD+V
Sbjct: 116 FSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLP 175
Query: 116 ---------------------YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
AR++FD MP K VSWN M+ GY K GEM AR +F+
Sbjct: 176 ERSVVSWSALTAGYARRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDE 235
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQG 214
PE++VV+W+ +I GYV G+ ++AL +FEEMR+VG +EVT++S+L ACA LG L G
Sbjct: 236 APEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVG 295
Query: 215 RMM---LRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIG 271
R + + M LS+ L +L+DMYAKCG+I+ AL VF + + DV WN++IG
Sbjct: 296 RKLHCSISEMTRGDLSVLLG--NALVDMYAKCGSIEIALQVFKKM--REKDVTTWNSVIG 351
Query: 272 GLAMHGFVKESLELFTEMQ-IVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GM 329
GLA HG +ES++LF EMQ + I P+EITF+G++ AC+H G V E +FK + +R +
Sbjct: 352 GLAFHGHAEESIKLFAEMQALKNIKPNEITFVGVIVACSHAGNVEEGRRYFKLMRERYDI 411
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P H+ CMVD L RAG ++EA+E I +M +EP A + +LL C HG ++L + +
Sbjct: 412 EPNMIHHGCMVDLLGRAGLLSEAFELIAKMEIEPNAIIWRTLLGACRVHGNVELGRLANE 471
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+L++L+ D G YV LSN+YA WD A R+ M+ GV+K G S +E
Sbjct: 472 RLLKLRRDESGDYVLLSNIYASAGEWDGAEEVRKLMDDGGVRKEAGRSLIE 522
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 187/440 (42%), Positives = 270/440 (61%), Gaps = 4/440 (0%)
Query: 3 SFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD 62
S S S+ I Y+ + S + NP + WNT+IR Y+ S P ++++F +ML A V PD
Sbjct: 48 SVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPD 107
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
T+ F K+ G + E +H + KTG DLFI N+LIH+Y SCG I AR + D
Sbjct: 108 KYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLD 167
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMA-RQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
M + VSWN++L YA+ G M +A R+VF P +NVVSW+A+I GY G + E LV
Sbjct: 168 RMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLV 227
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+FE+M+ G K + TLVSVL ACAH+GAL QG + Y+ G+S+ + T+L+DMY+
Sbjct: 228 LFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYS 287
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
KCG+I++AL VF+ + D+ WN++I GL+ HG + +L++F+EM + G P+E+TF
Sbjct: 288 KCGSIEKALEVFNSCLR--KDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTF 345
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+ +LSAC+ GL+ E F + G+ P EHY CMVD L R G + EA E + +MP
Sbjct: 346 VCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMP 405
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
+ + + SLL C NHG ++LAE V +KL+EL P +V LSN+YA RW +
Sbjct: 406 QKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVME 465
Query: 421 TREAMETRGVKKYPGWSFVE 440
R+ M +GV+K PG S +E
Sbjct: 466 VRQKMRAQGVRKDPGCSMIE 485
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 171/429 (39%), Positives = 282/429 (65%), Gaps = 3/429 (0%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+ Y+ + S + NP +F +N +IR +S P+K+ + +ML++ + PD++T+PFL KA
Sbjct: 67 LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 126
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
S + + H+QI + G+++D+++ NSL+HMY +CG I A +F M + VSW
Sbjct: 127 SSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSW 186
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
SM+ GY KCG + AR++F+ MP RN+ +WS +I+GY K +++A+ +FE M+ G
Sbjct: 187 TSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV 246
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
ANE +VSV+ +CAHLGAL+ G Y++ +++ L L T+L+DM+ +CG I++A+ V
Sbjct: 247 ANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHV 306
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F G+ ++D L W+++I GLA+HG +++ F++M +G P ++TF +LSAC+HGG
Sbjct: 307 FEGLP--ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGG 364
Query: 313 LVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
LV + ++++ K G+ P+ EHY C+VD L RAG++ EA FI +M ++P A +LG+L
Sbjct: 365 LVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGAL 424
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
L C + ++AE VG L++++P+H G YV LSN+YA +WD+ + R+ M+ + VK
Sbjct: 425 LGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVK 484
Query: 432 KYPGWSFVE 440
K PGWS +E
Sbjct: 485 KPPGWSLIE 493
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 32/240 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + ++ + + +F W+ +I GY+K+ K+I LF M R GV + +
Sbjct: 197 GMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVI 256
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ L E + + K+ +L + +L+ M+ CGDI A VF+G+P S+
Sbjct: 257 SSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSL 316
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW+S++ G A G + +A+ F +M +G
Sbjct: 317 SWSSIIKGLAVHGHAH-------------------------------KAMHYFSQMISLG 345
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+VT +VL AC+H G +++G + M D G+ L ++DM + G + EA
Sbjct: 346 FIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEA 405
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 193/448 (43%), Positives = 280/448 (62%), Gaps = 10/448 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L FS S +DYS ++ + N F WNT++R Y +S + K++ L+ M++ V
Sbjct: 67 LLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVG 126
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+ TYP + +A +H + K G++SD+++ N+LI+MY CG++ AR++
Sbjct: 127 PDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKL 186
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNM---ARQVFELMPERNVVSWSALIDGYVKCGDYK 177
FD P SVSWNS+L GY K G+M A ++F M E+++VSWSALI GY + G Y+
Sbjct: 187 FDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYE 246
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
EALV+F EM G + +EV +VSVL ACAHL + G+M+ +I G+ + LQ +LI
Sbjct: 247 EALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALI 306
Query: 238 ----DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
DMY KCG ++ AL VF+G+E + V WNA+I GLA++G V+ SL++F+EM+ G
Sbjct: 307 HMYSDMYMKCGCVENALEVFNGME--EKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNG 364
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEA 352
+ P+EITF+G+L AC H GLV E F S+ K G+ P +HY CMVD L RAG + EA
Sbjct: 365 VIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEA 424
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412
+ I MP+ P + G+LL C HG ++ E VG+KL+ELQPDHDG +V LSN++A
Sbjct: 425 EKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASK 484
Query: 413 KRWDEARTTREAMETRGVKKYPGWSFVE 440
W++ R M+ +GV K PG S +E
Sbjct: 485 GDWEDVLEVRGMMKQQGVVKTPGCSLIE 512
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 186/441 (42%), Positives = 275/441 (62%), Gaps = 3/441 (0%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ F A+S G+++Y+ +V + +P + +NT+ RGY + + I ++ +ML VS
Sbjct: 58 VIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVS 117
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ TYP L +A E +HA + K G+ +D F N+LIHMY + + AR V
Sbjct: 118 PNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRV 177
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD MP + VSW S++ GY++ G ++ AR+VFELMPERN VSW+A+I YV+ EA
Sbjct: 178 FDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAF 237
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F+ MR ++ S+L AC LGAL+QG+ + Y+ G+ L L T++IDMY
Sbjct: 238 ALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMY 297
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
KCG +++A VF+ E Q + WN MIGGLAMHG + ++ELF EM+ + PD IT
Sbjct: 298 CKCGCLEKASEVFN--ELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGIT 355
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+ +LSACAH GLV E ++F+ + + G+ P EH+ CMVD L RAG + EA + I +M
Sbjct: 356 FVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEM 415
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P+ P A +LG+L+ C HG +L E +GKK++EL+P + GRYV L+N+YA RW++
Sbjct: 416 PVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVA 475
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R+ M RGVKK PG+S +E
Sbjct: 476 KVRKLMNDRGVKKAPGFSMIE 496
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 361 bits (926), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 180/415 (43%), Positives = 261/415 (62%), Gaps = 3/415 (0%)
Query: 26 PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAV 85
P F WN+ ++ ++ +P +I LF ++ + V PD T + +A L +
Sbjct: 91 PETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRIL 150
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
H + K G+ S+L++ N ++H+Y SCG++ AR +F+ MP + V+WN M+ K G+
Sbjct: 151 HGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDH 210
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
A +F MPERNV SW+++I GYV+CG KEA+ +F +M + G K NEVT+V+VL AC
Sbjct: 211 EGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAAC 270
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
A LGALD G + Y G + + +LIDMY KCG ++EA VF +E + V+
Sbjct: 271 ADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME--ERTVVS 328
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
W+AMIGGLAMHG +E+L LF++M VGI P+ +TF+GLL AC+H GL+ E FF S+
Sbjct: 329 WSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMT 388
Query: 326 KR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
+ G++P+ EHY CMVD LSRAG + EA+EFI MP++P + G+LL C H +++A
Sbjct: 389 RDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMA 448
Query: 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
E K L+EL P +DG YV LSN+YA RW++ R+ M+ R VKK PGWS +
Sbjct: 449 EEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSI 503
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 127/275 (46%), Gaps = 33/275 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+ + + + S + + W ++I GY + ++I LF KM AGV + +T +
Sbjct: 208 GDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVL 267
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L +L + +H + G++ ++ ISN+LI MY CG + A +VF+ M + V
Sbjct: 268 AACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVV 327
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW++M+ G A G +EAL +F +M VG
Sbjct: 328 SWSAMIGGLAMHGRA-------------------------------EEALRLFSDMSQVG 356
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ N VT + +L AC+H+G + +GR M D G+ + ++D+ ++ G + EA
Sbjct: 357 IEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEA 416
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLE 284
+ + V +W A++G +H V+ + E
Sbjct: 417 HEFILNMPMKPNGV-VWGALLGACRVHKNVEMAEE 450
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 360 bits (924), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 180/417 (43%), Positives = 261/417 (62%), Gaps = 3/417 (0%)
Query: 24 SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAV 83
P F WN+ ++ ++ +P +I LF ++ + V PD T + +A L
Sbjct: 89 QKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGR 148
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
+H + K G+ S+L++ N ++H+Y SCG++ AR +F+ MP + V+WN M+ K G
Sbjct: 149 ILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQG 208
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
+ A +F MPERNV SW+++I GYV+CG KEA+ +F +M + G K NEVT+V+VL
Sbjct: 209 DHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLA 268
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
ACA LGALD G + Y G + + +LIDMY KCG ++EA VF +E + V
Sbjct: 269 ACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME--ERTV 326
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
+ W+AMIGGLAMHG +E+L LF++M VGI P+ +TF+GLL AC+H GL+ E FF S
Sbjct: 327 VSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFAS 386
Query: 324 LGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ + G++P+ EHY CMVD LSRAG + EA+EFI MP++P + G+LL C H ++
Sbjct: 387 MTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVE 446
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
+AE K L+EL P +DG YV LSN+YA RW++ R+ M+ R VKK PGWS +
Sbjct: 447 MAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSI 503
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 127/275 (46%), Gaps = 33/275 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+ + + + S + + W ++I GY + ++I LF KM AGV + +T +
Sbjct: 208 GDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVL 267
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L +L + +H + G++ ++ ISN+LI MY CG + A +VF+ M + V
Sbjct: 268 AACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVV 327
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW++M+ G A G +EAL +F +M VG
Sbjct: 328 SWSAMIGGLAMHGRA-------------------------------EEALRLFSDMSQVG 356
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ N VT + +L AC+H+G + +GR M D G+ + ++D+ ++ G + EA
Sbjct: 357 IEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEA 416
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLE 284
+ + V +W A++G +H V+ + E
Sbjct: 417 HEFILNMPMKPNGV-VWGALLGACRVHKNVEMAEE 450
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 360 bits (924), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 179/441 (40%), Positives = 275/441 (62%), Gaps = 13/441 (2%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP--------- 61
G ++ +V +H+ P + N +I+ Y+++ ++ ++V+MLR P
Sbjct: 56 GRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVG 115
Query: 62 DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121
D TYPFL KA G LA +L VHA +A++G ES + NSLI MY CGD+ AR+VF
Sbjct: 116 DRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVF 175
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
DGM K +VSWN+++ +A+ G+M AR++F MP++ VVSW+AL+ GY GD+ A+
Sbjct: 176 DGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVE 235
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+F +M+ G + ++V++V+VL ACA LGAL+ GR + Y G+ + + +L++MYA
Sbjct: 236 VFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYA 295
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEIT 300
KCG I+EAL +FHG+ + DV+ W+ IGGLA HG +E+++LF M G + P+ IT
Sbjct: 296 KCGCIEEALQLFHGMS--EKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGIT 353
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+GLLSAC+H GL+ E +F + + G+ P EHY C+VD L R+G++ A + I M
Sbjct: 354 FVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIGGM 413
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P+ P + GSLL+ C +H +D A + ++LVEL+P+ G V L+NVYA RW
Sbjct: 414 PIPPDGKIWGSLLSACRSHSDVDTAVVAAERLVELEPEDVGNLVMLANVYAAAGRWGNVA 473
Query: 420 TTREAMETRGVKKYPGWSFVE 440
+TR+ + +R +K PG S +E
Sbjct: 474 STRKEIRSRSTRKTPGCSMIE 494
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 136/304 (44%), Gaps = 34/304 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SA + +G + + ++ + + + W ++ GY+ + ++ +F +M G PD
Sbjct: 190 ISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDD 249
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
++ + A +L EL ++A K G ++I N+L+ MY CG I A ++F G
Sbjct: 250 VSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHG 309
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M K +SW++ + G A G A ++FE+M +E V+
Sbjct: 310 MSEKDVISWSTAIGGLAAHGRAREAVKLFEVMD--------------------REGRVM- 348
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQG-RMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
N +T V +L AC+H G LD+G R R + G+ ++ ++D+ +
Sbjct: 349 ---------PNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGR 399
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
G I+ AL G+ D IW +++ H V + + ++V + P+++ L
Sbjct: 400 SGRIQRALDTIGGMPI-PPDGKIWGSLLSACRSHSDVDTA--VVAAERLVELEPEDVGNL 456
Query: 303 GLLS 306
+L+
Sbjct: 457 VMLA 460
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 177/431 (41%), Positives = 268/431 (62%), Gaps = 3/431 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
L N+ Y+ V +S+P WNT++R YS S +P ++ L+ +ML V + T+PFL
Sbjct: 57 LVNLAYTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFL 116
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA L+ E +HA I K G+ +++ +NSL+ +Y G+I A +F+ +PT+
Sbjct: 117 LKACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDI 176
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSWN M+DGY K G ++MA ++F+ MPE+NV+SW+ +I G+V+ G +KEAL + ++M
Sbjct: 177 VSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVA 236
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G K + +TL L ACA LGAL+QG+ + Y+ + + L L DMY KCG +++A
Sbjct: 237 GIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKA 296
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
L+VF +EK V W A+IGGLA+HG +E+L+ FT+MQ GI P+ ITF +L+AC+
Sbjct: 297 LLVFSKLEK--KCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACS 354
Query: 310 HGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GL E F+S+ + P EHY CMVD + RAG + EA EFI MP++P A++
Sbjct: 355 HAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIW 414
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C H +L + +GK L+EL PDH GRY+ L+++YA W++ R ++ R
Sbjct: 415 GALLNACQLHKHFELGKEIGKILIELDPDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHR 474
Query: 429 GVKKYPGWSFV 439
G+ +PG S +
Sbjct: 475 GLLNHPGCSSI 485
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 178/436 (40%), Positives = 265/436 (60%), Gaps = 3/436 (0%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S ++ + Y+ + L + +WNT +R +++ +P +ISLF ++ +SPDH
Sbjct: 55 SVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHY 114
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T F+ KA RL VH + K G +S++F+ N ++H+Y CG+I AR+VFD M
Sbjct: 115 TCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKM 174
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
P + ++WN M+ K G+ A ++F MPERNV SW+++I GY +CG KEA+ +F
Sbjct: 175 PQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFL 234
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
EM D G NEVT+V+VL ACA +G L GR + + G + + +LIDMY KCG
Sbjct: 235 EMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCG 294
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+++A +F +E + V+ W+AMI GLA HG +++L LF +M G+ P+ +TF+G+
Sbjct: 295 CLEDACRIFDNME--ERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGI 352
Query: 305 LSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L AC+H G+V + +F S+ + G+VP+ EHY CMVD SRAG + EA+EFI MP+ P
Sbjct: 353 LHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAP 412
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ G+LL GC H + LAE + L +L P +DG YV LSN+YA RW++ R+
Sbjct: 413 NGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRK 472
Query: 424 AMETRGVKKYPGWSFV 439
M RGVKK PGWS +
Sbjct: 473 LMRDRGVKKTPGWSSI 488
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 187/470 (39%), Positives = 270/470 (57%), Gaps = 34/470 (7%)
Query: 3 SFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD 62
S S S+ I Y+ + S + NP + WNT+IR Y+ S P ++++F +ML A V PD
Sbjct: 48 SVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPD 107
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
T+ F K+ G + E +H + KTG DLFI N+LIH+Y SCG I AR + D
Sbjct: 108 KYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLD 167
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMA-------------------------------RQV 151
M + VSWN++L YA+ G M +A R+V
Sbjct: 168 RMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRV 227
Query: 152 FELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGAL 211
F P +NVVSW+A+I GY G + E LV+FE+M+ G K + TLVSVL ACAH+GAL
Sbjct: 228 FGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGAL 287
Query: 212 DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIG 271
QG + Y+ G+S+ + T+L+DMY+KCG+I++AL VF+ + D+ WN++I
Sbjct: 288 SQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLR--KDISTWNSIIS 345
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMV 330
GL+ HG + +L++F+EM + G P+E+TF+ +LSAC+ GL+ E F + G+
Sbjct: 346 GLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQ 405
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKK 390
P EHY CMVD L R G + EA E + +MP + + + SLL C NHG ++LAE V +K
Sbjct: 406 PTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQK 465
Query: 391 LVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L+EL P +V LSN+YA RW + R+ M +GV+K PG S +E
Sbjct: 466 LLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIE 515
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/467 (41%), Positives = 270/467 (57%), Gaps = 34/467 (7%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A + N++++ KV ++ NP +F +N +I+G ++ P K+I + KM+ A P+ T
Sbjct: 73 ANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFT 132
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGS--------------- 110
YP L KA E V VHA + K G D+ I ++ I MYGS
Sbjct: 133 YPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDG 192
Query: 111 ----------------CGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
CG++ A+E+F M K SWN M+ G AKCG + AR++F
Sbjct: 193 NSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNE 252
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQG 214
M E+N +SWSA+IDGY+K G YKEAL +F M+ + + L SVL ACA+LGALDQG
Sbjct: 253 MKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQG 312
Query: 215 RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLA 274
R + Y+ + S L T+L+DMYAKCG + A VF +EK +V WNAMI GL
Sbjct: 313 RWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEK--KEVFTWNAMICGLG 370
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKS 333
MHG ++++ELF +MQ P+ IT LG+LSACAH G+V E F S+ + G+ P
Sbjct: 371 MHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGM 430
Query: 334 EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
EHY C+VD L RAG + EA E + MP+EP+A++ G+LL C HG ++L E VGK L+E
Sbjct: 431 EHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLE 490
Query: 394 LQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L+P + GRY LSN+YA RWD+ R+ M+ RGVK G S ++
Sbjct: 491 LEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMID 537
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 115/277 (41%), Gaps = 33/277 (11%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S ++ G I+ + ++ + + W+ +I GY K +++ +F M R + P
Sbjct: 235 SGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKF 294
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
+ A L + +HA + D + +L+ MY CG + A +VF+ M
Sbjct: 295 VLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKM 354
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
K +WN+M+ G G ++A+ +F
Sbjct: 355 EKKEVFTWNAMICGLGMHGRA-------------------------------EDAIELFF 383
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKC 243
+M+ + N +TL+ VL ACAH G +D+G + M + G+ + ++D+ +
Sbjct: 384 KMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRA 443
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G + EA V + + S +W A++G HG V+
Sbjct: 444 GLLGEAEEVMYSMPMEPS-AAVWGALLGACRKHGDVE 479
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 183/459 (39%), Positives = 277/459 (60%), Gaps = 22/459 (4%)
Query: 2 LSFSALSYL-----------GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISL 50
LS S SYL G + ++ +V S + P + N +I+ Y+++ +I++
Sbjct: 39 LSLSQSSYLATQIVHLCNAHGRVAHATRVFSQVREPNLHLHNAMIKAYAQNHRHLDAITV 98
Query: 51 FVKMLRAGVSP-------DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNS 103
+++MLR P D TYPFL KA G L +L VH + ++G ES+ + NS
Sbjct: 99 YIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNS 158
Query: 104 LIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSW 163
LI MY GD+V AR+VFDGM + VSWN+++ +A+ G+M AR VF MP++ VVSW
Sbjct: 159 LIEMYTRAGDLVLARKVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSW 218
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
+AL+ GY GD+ A+ F M+ G + ++V++V+VL ACA LGAL+ GR + Y
Sbjct: 219 TALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNR 278
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
+ + +L++MYAKCG I +AL +F+G+ + DV+ W+ M+GGLA HG +E++
Sbjct: 279 HQMLRETYVCNALVEMYAKCGCIDQALQLFNGMA--EKDVISWSTMVGGLAAHGRAQEAV 336
Query: 284 ELFTEMQIVG-ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVD 341
+LFTEM+ G + P+ ITF+GLLSAC+H GL+ E +F + G+ P EHY C+VD
Sbjct: 337 QLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMNDVYGIEPGVEHYGCIVD 396
Query: 342 ALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR 401
L R+GQ+ + I MPL A + GS+L C +HG +D A + ++LV L+P+ G
Sbjct: 397 LLCRSGQIQRTLDLISDMPLPADAKIWGSVLNACRSHGDVDTAVLAAERLVALEPEDVGN 456
Query: 402 YVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
V L+NVYA +RW E TR+A+ +R ++K PG S +E
Sbjct: 457 LVMLANVYAAARRWSEVANTRKAIRSRSMRKTPGCSLIE 495
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/327 (20%), Positives = 126/327 (38%), Gaps = 58/327 (17%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VHA + +++ ++H+ + G + +A VF + N+M+ YA+
Sbjct: 32 VHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRVFSQVREPNLHLHNAMIKAYAQNHR 91
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
A V+ M R W + G + T +L A
Sbjct: 92 HLDAITVYIRMLRRRPFPWISCTGG------------------------DRFTYPFLLKA 127
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH----- 259
C L ALD G+ + +++ G +Q SLI+MY + G + A VF G+++
Sbjct: 128 CGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSW 187
Query: 260 ------------------------QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
V+ W A++ G G ++E F MQ+ G
Sbjct: 188 NTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFE 247
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYAC--MVDALSRAGQVTEAY 353
PD+++ + +L ACA G + + + + M+ E Y C +V+ ++ G + +A
Sbjct: 248 PDDVSIVAVLPACAQLGALELGRWIYAYCNRHQML--RETYVCNALVEMYAKCGCIDQAL 305
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGK 380
+ M + S +++ G HG+
Sbjct: 306 QLFNGMAEKDVISW-STMVGGLAAHGR 331
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 179/432 (41%), Positives = 263/432 (60%), Gaps = 7/432 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG +DYS + NP +F+W +I G++ ++++ + +ML GV P+ T+ +
Sbjct: 75 LGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSI 134
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
K L E A+H+Q K G++SDL++ L+ +Y GD+V A+++FD MP K
Sbjct: 135 LK----LCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSL 190
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VS +ML YAK GE++ AR +F+ M ER+ V W+ +IDGY + G EALV+F M
Sbjct: 191 VSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKA 250
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+K NEVT++SVL AC LGAL+ GR + Y+ + G+ + + T+L+DMY+KCG++++A
Sbjct: 251 KAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDA 310
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+VF ++ DV+ WN+MI G AMHGF +E+L+LF M +G+ P ITF+G+LSAC
Sbjct: 311 RLVFDKID--DKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACG 368
Query: 310 HGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H G V E W F + G+ PK EHY CMV+ L RAG V +AYE + M +EP +
Sbjct: 369 HSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLW 428
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C HGK+ L E + + LV+ + G Y+ LSN+YA WD R M+
Sbjct: 429 GTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDS 488
Query: 429 GVKKYPGWSFVE 440
GVKK PG S +E
Sbjct: 489 GVKKEPGCSSIE 500
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 114/270 (42%), Gaps = 6/270 (2%)
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+ +HA + + G + ++ L Y S G + Y+ +F W +++ G+A
Sbjct: 47 LQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALR 106
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
G A + M + V + +K + + + +G ++ +L
Sbjct: 107 GLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLL 166
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
A G + + + M +K L ++L T+++ YAK G + A ++F G+E + D
Sbjct: 167 DVYARGGDVVSAQQLFDTMPEKSL-VSL---TAMLTCYAKHGELDAARVLFDGME--ERD 220
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
+ WN MI G +G E+L LF M P+E+T L +LSAC G + +
Sbjct: 221 GVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHS 280
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEA 352
+ G+ +VD S+ G + +A
Sbjct: 281 YIENNGIQFNVHVGTALVDMYSKCGSLEDA 310
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 86/190 (45%), Gaps = 5/190 (2%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+++ + V + + + WN++I GY+ +++ LF M R G+ P ++T+
Sbjct: 302 SKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFI 361
Query: 68 FLAKASGRLAKRELAVAVHAQIA-KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A G + ++ + G E + ++++ G G + A E+ M
Sbjct: 362 GILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNI 421
Query: 127 KMS-VSWNSMLDGYAKCGEMNMARQVFELMPERNVV---SWSALIDGYVKCGDYKEALVI 182
+ V W ++L G++ + ++ EL+ ++N+ ++ L + Y G++ +
Sbjct: 422 EPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARL 481
Query: 183 FEEMRDVGSK 192
M+D G K
Sbjct: 482 RTMMKDSGVK 491
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 183/469 (39%), Positives = 282/469 (60%), Gaps = 35/469 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
SA+ G +DY+ ++ + +S P IF WNT+IRG +++ P ++SL+ +M GV PD
Sbjct: 55 SAIVVSGTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKF 114
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV--------- 115
T+ F+ KA +L+ +L +H ++ K+G++S+ F+ N+LI+ + +CGD+
Sbjct: 115 TFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDAS 174
Query: 116 ----------------------YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFE 153
AR++FD MP K VSWN M+ YAK GEM AR++F+
Sbjct: 175 AKREVVPWSALTAGYARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFD 234
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
+P+++VV+W+A+I GYV KEAL +F+ MRD+G + ++VT++S+L A A LG L+
Sbjct: 235 EVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEI 294
Query: 214 GRMMLRYMIDKGL-SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
G+ + R + D L++ L +LIDMYAKCG+I AL VF G+ K D WN++IGG
Sbjct: 295 GKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRK--KDTSSWNSIIGG 352
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-P 331
LA+HG +ES+ LF EM + + P+EITF+ +L AC+H G V E +F + + P
Sbjct: 353 LALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNVFKIEP 412
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL 391
+HY CMVD L RAG + EA++FI M +EP A + +LL C HG ++L ++L
Sbjct: 413 NIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGDVELGRRANEQL 472
Query: 392 VELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++++ D G YV LSN+YA WD + R+ M+ GVKK G S ++
Sbjct: 473 LKMRKDESGDYVLLSNIYASQGEWDGVQKVRKLMDDGGVKKKVGHSLID 521
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 183/439 (41%), Positives = 270/439 (61%), Gaps = 1/439 (0%)
Query: 2 LSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP 61
L+ ++G++ Y+ +V + +++P F WN +IR YS S P + + +ML + V
Sbjct: 27 LTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPH 86
Query: 62 DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121
+ T+PFL +A L A+ VH + K G+ SD+F N+L+H+Y CG+I AR++F
Sbjct: 87 NSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLF 146
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
D +P + +VSWN M+DGY K G++ A VF MP +NVVSW++LI G V+ G EAL
Sbjct: 147 DNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALS 206
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+ EM++ G + + V + S+L ACA+LGALDQGR + Y+++ G+ + + +L++MY
Sbjct: 207 LCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYV 266
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
KCG ++EAL VF ++ +Q DV IW AMI G A+HG E+LE F M+ GI P+ ITF
Sbjct: 267 KCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITF 326
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+L AC++GGLV E FKS+ + P EHY CMVD L R+G++ EA E I +MP
Sbjct: 327 TAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMP 386
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
++P+A + G+LL C H L VG LVE+ DH GRY+ L+ + A +W EA
Sbjct: 387 MKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAE 446
Query: 421 TREAMETRGVKKYPGWSFV 439
R M++ GV PG S V
Sbjct: 447 VRLKMKSLGVPISPGKSSV 465
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 189/471 (40%), Positives = 274/471 (58%), Gaps = 34/471 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GV 59
+++F A+S ++DY +L + NP F WN IRG+ S+NP +++ L+ ++L+ G
Sbjct: 88 LIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGT 147
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI----- 114
PD+ TYP L KA RL+ + + + G++SD+F+SN++IH+ SCGD+
Sbjct: 148 KPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARK 207
Query: 115 ------------------------VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
AR++FD M K VSW +M+ GYA+ G ++MA +
Sbjct: 208 MFDKSCVRDLVSWNSMINGYCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWK 267
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F+ MP+++VV W+A+I GYV KEAL +F EM+ + +EVT+VS L AC+ LGA
Sbjct: 268 LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGA 327
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
LD G + Y+ LSL + L T+LIDMYAKCG I +A+ VF + S L W A+I
Sbjct: 328 LDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNS--LTWTAII 385
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGM 329
GLA+HG ++ F+EM + PDE+TFLGLLSAC HGGLV E +F + K +
Sbjct: 386 SGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNL 445
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
PK +HY+CMVD L RAG + EA E I MP+E A + G+L C HG + + E
Sbjct: 446 SPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAAS 505
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP-GWSFV 439
KL+++ P G YV L+N+Y + W EA R+ M RGV+K P WS +
Sbjct: 506 KLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPDSWSLL 556
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 188/430 (43%), Positives = 267/430 (62%), Gaps = 16/430 (3%)
Query: 22 HLSNPRI--FYWNTVIRGYSKSKNPNKS----ISLFVKMLRAGVSPDHLTYPFLAKASGR 75
HLS+P I F WN +IR ++S+ N + +SL+++M V PD T+PFL ++
Sbjct: 16 HLSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINT 75
Query: 76 LAK-RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
+ R+L HAQI G +D F+ SLI+MY SCG +AR+ FD + SWN+
Sbjct: 76 PHRGRQL----HAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNA 131
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV-GS-- 191
++ AK G +++AR++F+ MPE+NV+SWS +I GYV CG+YK AL +F ++ + GS
Sbjct: 132 IIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQL 191
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ NE T+ SVL ACA LGAL G+ + Y+ G+ + + L TSLIDMYAKCG+I+ A
Sbjct: 192 RPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKC 251
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
+F + + DV+ W+AMI +MHG +E LELF M G+ P+ +TF+ +L AC HG
Sbjct: 252 IFDNLGP-EKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHG 310
Query: 312 GLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GLV E +FK + + G+ P +HY CMVD SRAG++ +A+ + MP+EP + G+
Sbjct: 311 GLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGA 370
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL G HG ++ EI KL+EL P + YV LSNVYA RW E R R+ ME RG+
Sbjct: 371 LLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGI 430
Query: 431 KKYPGWSFVE 440
KK PG S VE
Sbjct: 431 KKLPGCSLVE 440
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 130/274 (47%), Gaps = 35/274 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR---AGVSPDHLTYP 67
G I + K+ + + W+ +I GY ++SLF + + + P+ T
Sbjct: 140 GMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMS 199
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A RL + VHA I KTG + D+ + SLI MY CG I A+ +FD
Sbjct: 200 SVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDN---- 255
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
L PE++V++WSA+I + G +E L +F M
Sbjct: 256 --------------------------LGPEKDVMAWSAMITAFSMHGLSEECLELFARMV 289
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAI 246
+ G + N VT V+VLCAC H G + +G + M+++ G+S + ++D+Y++ G I
Sbjct: 290 NDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRI 349
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
++A V + + DV+IW A++ G +HG V+
Sbjct: 350 EDAWNVVKSMPM-EPDVMIWGALLNGARIHGDVE 382
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 183/438 (41%), Positives = 271/438 (61%), Gaps = 3/438 (0%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
A S LG YS + +H + P I+ +NT+I+ S + ++I L+ ++L + + D
Sbjct: 80 IEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDT 139
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+ PF+ KA RL + +H Q TG SD+ + +LI MY SCG + AR++FDG
Sbjct: 140 YSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDG 199
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+ + WN+M+ GYAK G+++ AR +FE MPERNV+SW+A+I GY + EA+ +F
Sbjct: 200 VCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMF 259
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
M+ + +E+ +++ L ACAHLGAL+ G + Y+ GLS +PL +LIDMYAKC
Sbjct: 260 RRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKC 319
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G I++AL VF +E H+S V+ W +MI GLA+HG +E+LE+F+ M+ I P+EITF+
Sbjct: 320 GKIEKALEVFKNME-HKS-VITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVA 377
Query: 304 LLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+LSAC H GLV ++FK +G K G+ PK +HY CM+D L RAG + EA E + MP E
Sbjct: 378 ILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFE 437
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
A + GSLL HG +L + + L++++P + G Y LSN+YA +W+EA R
Sbjct: 438 ANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVR 497
Query: 423 EAMETRGVKKYPGWSFVE 440
+ M GVKK PG S +E
Sbjct: 498 KVMRDTGVKKMPGGSCIE 515
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 183/438 (41%), Positives = 271/438 (61%), Gaps = 3/438 (0%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
A S LG YS + +H + P I+ +NT+I+ S + ++I L+ ++L + + D
Sbjct: 80 IEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDT 139
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+ PF+ KA RL + +H Q TG SD+ + +LI MY SCG + AR++FDG
Sbjct: 140 YSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDG 199
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+ + WN+M+ GYAK G+++ AR +FE MPERNV+SW+A+I GY + EA+ +F
Sbjct: 200 VCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMF 259
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
M+ + +E+ +++ L ACAHLGAL+ G + Y+ GLS +PL +LIDMYAKC
Sbjct: 260 RRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKC 319
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G I++AL VF +E H+S V+ W +MI GLA+HG +E+LE+F+ M+ I P+EITF+
Sbjct: 320 GKIEKALEVFKNME-HKS-VITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVA 377
Query: 304 LLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+LSAC H GLV ++FK +G K G+ PK +HY CM+D L RAG + EA E + MP E
Sbjct: 378 ILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFE 437
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
A + GSLL HG +L + + L++++P + G Y LSN+YA +W+EA R
Sbjct: 438 ANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVR 497
Query: 423 EAMETRGVKKYPGWSFVE 440
+ M GVKK PG S +E
Sbjct: 498 KVMRDTGVKKMPGGSCIE 515
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 174/438 (39%), Positives = 271/438 (61%), Gaps = 5/438 (1%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S GN++ + + + +NT+I+GY++ P ++ LF +M +G+ PD T+
Sbjct: 157 SVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFV 216
Query: 68 FLAKASGRLAKRELAVAVHAQIAKT--GYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
L L + + +HAQ+ K +S++ + ++++ MY CG I A VF M
Sbjct: 217 ALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMG 276
Query: 126 T-KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
T K + +W+SM+ GYA+CGE+N+AR++F M ER+V+SW+A+I GY + G EAL +F+
Sbjct: 277 TSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFK 336
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL-SLTLPLQTSLIDMYAKC 243
EM +G K +EVTLV+VL ACA LGA D G+ + I+ G+ + L +++DMYAKC
Sbjct: 337 EMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKC 396
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G+I AL +F V K+ ++N+MI GLA HG + ++ +F E+ G+ PDE+TF+G
Sbjct: 397 GSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVG 456
Query: 304 LLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+L AC H GL+ E F+S+ G+ P+ EHY CMVD L R G + EAY+ + +MP E
Sbjct: 457 VLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFE 516
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
+ + +LL+ C HG + + EI G+KL+E++ H RYV LSN+ A +W+EAR R
Sbjct: 517 ANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVR 576
Query: 423 EAMETRGVKKYPGWSFVE 440
+ ME G++K PGWS++E
Sbjct: 577 KVMEDHGIRKPPGWSYIE 594
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 132/431 (30%), Positives = 212/431 (49%), Gaps = 68/431 (15%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP-D 62
FS L +D+S + S + P +F WNT+IRGYS+S NP ++I L++ M+ G++P +
Sbjct: 51 FSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPN 110
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
+ T+PFL + RL+ E VH+ I K G+ESDLF+ N+LIH+Y G++ AR +FD
Sbjct: 111 NFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFD 170
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ VS+N+M+ GYA+ + PE AL +
Sbjct: 171 ESLVRDLVSYNTMIKGYAEVNQ-----------PE--------------------SALCL 199
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR--YMIDKGLSLTLPLQTSLIDMY 240
F EM++ G +E T V++ C+ L + G+ + Y + + + L+++++DMY
Sbjct: 200 FGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMY 259
Query: 241 AKCGAIKEALIVFH--GVEK----------------------------HQSDVLIWNAMI 270
AKCG I A VF G K H+ DV+ W AMI
Sbjct: 260 AKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMI 319
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
G + G E+LELF EM+ +GI PDE+T + +LSACA G + + G+
Sbjct: 320 SGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVF 379
Query: 331 PKSEHY-ACMVDALSRAGQVTEAYEFICQMPLE-PTASMLGSLLTGCMNHGKLDLAEIVG 388
++ A ++D ++ G + A E ++ T + S++ G HG + A V
Sbjct: 380 NQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVF 439
Query: 389 KKLVE--LQPD 397
++L+ L+PD
Sbjct: 440 RELISTGLKPD 450
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 180/441 (40%), Positives = 270/441 (61%), Gaps = 3/441 (0%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++SF A+S G+I ++ + L F WNT++R ++ K P +SL+ ML G
Sbjct: 51 IISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFL 110
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P++ T+ FL +A +L+ + +HAQ + G+E+ F+ N L+H+Y SC + AR +
Sbjct: 111 PNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRL 170
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FDG + V+W ++++GYAK G++ +ARQ+F+ MPE+N VSWSA+I GY + G ++EAL
Sbjct: 171 FDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREAL 230
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F +M+ G + N +V L ACA LGALDQGR + Y+ + L L T+LIDMY
Sbjct: 231 ELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMY 290
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG ++ A VF E DV + ++I GLA HG ++E+FT MQ G+ P+E+T
Sbjct: 291 AKCGCVETACRVFD--EMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVT 348
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+ LLSAC+ GLV E FKS+ G+ P +HY C+VD L RAG + +A + +M
Sbjct: 349 FICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREM 408
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
PLEP + +LG+LL C HG ++L + + L E DH G +V LSN+YA +W++
Sbjct: 409 PLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYASANQWEDVA 468
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R+ ME + VKK PG S +E
Sbjct: 469 KVRKGMEEKKVKKVPGCSLIE 489
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 184/443 (41%), Positives = 267/443 (60%), Gaps = 10/443 (2%)
Query: 6 ALSYLGNIDYSCKVLSHLSN-PRIFYWNTVIRGYSKS-KNPNKSISLFVKMLRAGVSPDH 63
A S LG Y+ + + +++ P I+ +N +I+ S S +P SI L+ + AG+ PD
Sbjct: 19 ACSSLGFYSYAYSLFTSITHAPDIYLYNNIIKALSSSPTHPKASIFLYNNIQLAGLRPDS 78
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD--IVYAREVF 121
++PF KA R + + +H+Q + G SDL + + + MY S G I AR++F
Sbjct: 79 YSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICDARKMF 138
Query: 122 DGMP--TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
DGM T WN+ML+GYAK G++ AR +FE MP+RNV+SW+ALI GY + +A
Sbjct: 139 DGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDA 198
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT-LPLQTSLID 238
+ +F M+ + +E+ ++ L ACA LGAL+ G + Y+ GL T +PL +LID
Sbjct: 199 IALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALID 258
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MYAK G IK AL VF + + ++ W MI GLA+HG E+LE+F+ M+ + P++
Sbjct: 259 MYAKSGDIKSALQVFENM--NHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPND 316
Query: 299 ITFLGLLSACAHGGLVMEA-WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
ITF+ +LSAC+H GLV WYF + + + G+ PK EHY CM+D L RAG + EA +
Sbjct: 317 ITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLA 376
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
QMP EP A + GSLL C HG +L E+ + L+EL+PD+ G Y LSN+YA RW+E
Sbjct: 377 QMPFEPNAVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALLSNIYASRGRWNE 436
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
+R R+ M GVKK PG S +E
Sbjct: 437 SRVVRKVMWDAGVKKMPGGSLIE 459
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 180/441 (40%), Positives = 270/441 (61%), Gaps = 3/441 (0%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++SF A+S G+I ++ + L F WNT++R ++ K P +SL+ ML G
Sbjct: 26 IISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFL 85
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P++ T+ FL +A +L+ + +HAQ + G+E+ F+ N L+H+Y SC + AR +
Sbjct: 86 PNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRL 145
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FDG + V+W ++++GYAK G++ +ARQ+F+ MPE+N VSWSA+I GY + G ++EAL
Sbjct: 146 FDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREAL 205
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F +M+ G + N +V L ACA LGALDQGR + Y+ + L L T+LIDMY
Sbjct: 206 ELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMY 265
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG ++ A VF E DV + ++I GLA HG ++E+FT MQ G+ P+E+T
Sbjct: 266 AKCGCVETACRVFD--EMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVT 323
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+ LLSAC+ GLV E FKS+ G+ P +HY C+VD L RAG + +A + +M
Sbjct: 324 FICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREM 383
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
PLEP + +LG+LL C HG ++L + + L E DH G +V LSN+YA +W++
Sbjct: 384 PLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYASANQWEDVA 443
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R+ ME + VKK PG S +E
Sbjct: 444 KVRKGMEEKKVKKVPGCSLIE 464
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 185/473 (39%), Positives = 274/473 (57%), Gaps = 40/473 (8%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S+ S L ++DY+ + + +N +IRG +++ SIS FV ML+ +SPD L
Sbjct: 82 SSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRL 141
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMY---------------- 108
T+PF+ K++ L+ + A+H I K G E D F+ SL+ MY
Sbjct: 142 TFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDES 201
Query: 109 -----------------GSC--GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
G C GD+V A E+FD MP K + SWNS+++G+ K G+M A+
Sbjct: 202 PESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAK 261
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
++F MPE+NVVSW+ +++G+ + GD ++AL F M + G++ N+ T+VS L ACA +G
Sbjct: 262 ELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIG 321
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
ALD G + Y+ G L L + T+L+DMYAKCG I+ A VFH E + +LIW+ M
Sbjct: 322 ALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFH--ETKEKGLLIWSVM 379
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
I G A+HG +++L+ F M+ G PD + FL +L+AC+H G V E FF ++ +RG
Sbjct: 380 IWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNM-RRGY 438
Query: 330 V--PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ P +HY +VD L RAG++ EA +FI MP+ P + G+L C H +++AE+
Sbjct: 439 LIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELA 498
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
KKL++L+P H G YV LSN YA RWD+A R +M G K PGWSF+E
Sbjct: 499 SKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIE 551
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 351 bits (900), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 184/442 (41%), Positives = 276/442 (62%), Gaps = 7/442 (1%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++F AL G++ Y+ V + + NP F N++IRGY+ P ++I + M+ G+
Sbjct: 16 IVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLD 75
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD T+P L K+ G L + + +H K G+ SD +I N+L++MY +CG +V AR+V
Sbjct: 76 PDRFTFPSLFKSCGVLCEGK---QLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKV 132
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP-ERNVVSWSALIDGYVKCGDYKEA 179
FD M K VSW +M+ YA+ + A ++F M N+ W+ +I+G+V+ DY+EA
Sbjct: 133 FDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEA 192
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F EM+ G K ++VT+ S+L AC HLGAL+ G+ + Y+ + + + + L T+L+DM
Sbjct: 193 LSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDM 252
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
YAKCG+I+ A+ VF E + DV+ W A+I GLAM G ++LELF EMQ+ + PD I
Sbjct: 253 YAKCGSIESAMRVFQ--EMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAI 310
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
TF+G+L+AC+H GLV E +F S+ K G+ P EHY CMVD L RAG++ EA + I
Sbjct: 311 TFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQN 370
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP+ P +L LL+ C HG L +AE ++L+EL P + G YV LSN+Y+ K W+ A
Sbjct: 371 MPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAA 430
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
+ RE M R +KK PG S +E
Sbjct: 431 KKMRELMVERNIKKPPGCSAIE 452
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 350 bits (899), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 178/432 (41%), Positives = 262/432 (60%), Gaps = 7/432 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG +DYS + NP +F+W +I G++ ++++ + +ML GV P+ T+ +
Sbjct: 22 LGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSI 81
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
K L E A+H+Q K G++SDL++ L+ +Y GD+V A+++FD MP K
Sbjct: 82 LK----LCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSL 137
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VS +ML YAK GE++ AR +F+ M ER+ V W+ +IDGY + G EALV+F M
Sbjct: 138 VSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKA 197
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+K NEVT++SVL AC LGAL+ GR + Y+ + G+ + + T+L+DMY+KCG++++A
Sbjct: 198 KAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDA 257
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+VF ++ DV+ WN+MI G AM GF +E+L+LF M +G+ P ITF+G+LSAC
Sbjct: 258 RLVFDKID--DKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACG 315
Query: 310 HGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H G V E W F + G+ PK EHY CMV+ L RAG V +AYE + M +EP +
Sbjct: 316 HSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLW 375
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C HGK+ L E + + LV+ + G Y+ LSN+YA WD R M+
Sbjct: 376 GTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDS 435
Query: 429 GVKKYPGWSFVE 440
GVKK PG S +E
Sbjct: 436 GVKKEPGCSSIE 447
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 6/251 (2%)
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV 161
+ L Y S G + Y+ +F W +++ G+A G A + M + V
Sbjct: 13 DKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVE 72
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
+ +K + + + +G ++ +L A G + + + M
Sbjct: 73 PNAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTM 132
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
+K L ++L T+++ YAK G + A ++F G+E + D + WN MI G +G E
Sbjct: 133 PEKSL-VSL---TAMLTCYAKHGELDAARVLFDGME--ERDGVCWNVMIDGYTQNGMPNE 186
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
+L LF M P+E+T L +LSAC G + + + G+ +VD
Sbjct: 187 ALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVD 246
Query: 342 ALSRAGQVTEA 352
S+ G + +A
Sbjct: 247 MYSKCGSLEDA 257
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 86/190 (45%), Gaps = 5/190 (2%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+++ + V + + + WN++I GY+ +++ LF M R G+ P ++T+
Sbjct: 249 SKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFI 308
Query: 68 FLAKASGRLAKRELAVAVHAQIA-KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A G + ++ + G E + ++++ G G + A E+ M
Sbjct: 309 GILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNI 368
Query: 127 KMS-VSWNSMLDGYAKCGEMNMARQVFELMPERNVV---SWSALIDGYVKCGDYKEALVI 182
+ V W ++L G++ + ++ EL+ ++N+ ++ L + Y G++ +
Sbjct: 369 EPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARL 428
Query: 183 FEEMRDVGSK 192
M+D G K
Sbjct: 429 RTMMKDSGVK 438
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 350 bits (898), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 185/440 (42%), Positives = 264/440 (60%), Gaps = 34/440 (7%)
Query: 2 LSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP 61
L F+ LS+ + Y+ ++ S + NP IF WNT+IRGY++S+NP ++ L+ +M + + P
Sbjct: 79 LIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEP 138
Query: 62 DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121
D TYPFL KA +L VH+ + G+ES +F+ N+L+HMY
Sbjct: 139 DTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMY------------- 185
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
A CG A ++FELM ERN+V+W+++I+GY G EAL
Sbjct: 186 ------------------AACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALT 227
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+F EM G + + T+VS+L ACA LGAL GR YM+ GL L +L+D+YA
Sbjct: 228 LFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYA 287
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
KCG+I++A VF +E + V+ W ++I GLA++GF KE+LELF E++ G+ P EITF
Sbjct: 288 KCGSIRQAHKVFDEME--EKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITF 345
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+G+L AC+H G+V E + +FK + + G+VPK EHY CMVD L RAG V +A+EFI MP
Sbjct: 346 VGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMP 405
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
++P A + +LL C HG L L E+ +L++L+P H G YV LSN+YA +RW +
Sbjct: 406 MQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHK 465
Query: 421 TREAMETRGVKKYPGWSFVE 440
R M GVKK PG S VE
Sbjct: 466 VRRTMLREGVKKTPGHSLVE 485
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 350 bits (898), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 180/439 (41%), Positives = 268/439 (61%), Gaps = 6/439 (1%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG---VSPD 62
AL N+DY+ K+L+H +NP +F N++IR YSKS P+KS + +L + +SPD
Sbjct: 52 ALHNTTNLDYANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPD 111
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
+ T+ FL + +L + VH + K G+E D + L+ MY G + VFD
Sbjct: 112 NYTFTFLVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFD 171
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
G V+ +ML+ AKCG+++ AR++F+ MPER+ V+W+A+I GY +CG +EAL +
Sbjct: 172 GAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDV 231
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F M+ G K NEV++V VL AC HL LD GR + Y+ + +T+ L T+L+DMYAK
Sbjct: 232 FHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAK 291
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG + A+ VF G++ + +V W++ IGGLAM+GF +ESL+LF +M+ G+ P+ ITF+
Sbjct: 292 CGNVDRAMQVFWGMK--ERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFI 349
Query: 303 GLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+L C+ GLV E F S+ G+ P+ EHY MVD RAG++ EA FI MP+
Sbjct: 350 SVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPM 409
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
P +LL C + +L EI +K+VEL+ +DG YV LSN+YA +K W+ +
Sbjct: 410 RPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSL 469
Query: 422 REAMETRGVKKYPGWSFVE 440
R+ M+ +GVKK PG S +E
Sbjct: 470 RQTMKAKGVKKLPGCSVIE 488
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 123/274 (44%), Gaps = 33/274 (12%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
+A + G+ID++ K+ + WN +I GY++ +++ +F M GV +
Sbjct: 185 LNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNE 244
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
++ + A L + VHA + + + + +L+ MY CG++ A +VF G
Sbjct: 245 VSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWG 304
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M ERNV +WS+ I G G +E+L +F
Sbjct: 305 M-------------------------------KERNVYTWSSAIGGLAMNGFGEESLDLF 333
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAK 242
+M+ G + N +T +SVL C+ +G +++GR M + G+ L ++DMY +
Sbjct: 334 NDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGR 393
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
G +KEAL + + + V W+A++ M+
Sbjct: 394 AGRLKEALNFINSMPM-RPHVGAWSALLHACRMY 426
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 178/428 (41%), Positives = 263/428 (61%), Gaps = 3/428 (0%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+ Y+ V P F WN +IRG+S S P +S+ L+ +ML + T+P L KA
Sbjct: 94 LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKA 153
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
L+ E +HAQI K GYE+D++ NSLI+ Y + G+ A +FD +P +VSW
Sbjct: 154 CSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSW 213
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
NS++ GYAK G+M++A +F M E+N +SW+ +I GYV+ G +KEAL +F EM++ +
Sbjct: 214 NSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVE 273
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ V+L + L ACA LGAL+QG+ + Y+ + + L LIDMYAKCG + EAL V
Sbjct: 274 PDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEV 333
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F +++ V W A+I G A HG +E++ F EMQ +GI P+ ITF +L+AC++ G
Sbjct: 334 FKNIQR--KSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTG 391
Query: 313 LVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
LV E F ++ + + P EHY C+VD LSRAG + EA FI +MPL+P A + G+L
Sbjct: 392 LVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGAL 451
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
L C H ++L E +G+ L+ + P H GRYV +N++A+ K+WD+A TR M+ +GV
Sbjct: 452 LKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVA 511
Query: 432 KYPGWSFV 439
K PG S +
Sbjct: 512 KVPGCSTI 519
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 135/319 (42%), Gaps = 68/319 (21%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM---------------L 55
GN + + + P WN+VI+GY+K+ + +++LF KM +
Sbjct: 193 GNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYV 252
Query: 56 RAG----------------VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
+AG V PD+++ A +L E +H+ + KT D
Sbjct: 253 QAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSV 312
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
+ LI MY CGD+ A EVF + K +W
Sbjct: 313 LGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAW--------------------------- 345
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
+ALI GY G +EA+ F EM+ +G K N +T +VL AC++ G +++G+++
Sbjct: 346 ----TALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFY 401
Query: 220 YM-IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGF 278
M D L T+ ++D+ ++ G + EA + + + +IW A++ +H
Sbjct: 402 NMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPL-KPNAVIWGALLKACRIH-- 458
Query: 279 VKESLELFTEMQIVGITPD 297
+++EL E+ + I D
Sbjct: 459 --KNIELGEEIGEILIAID 475
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 141/322 (43%), Gaps = 16/322 (4%)
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIH--MYGSCGDIV-YAREVFD 122
Y + R +K+E +HA++ KTG D + + + + D + YA+ VFD
Sbjct: 43 YCMMPNTETRCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFD 102
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELM----PERNVVSWSALIDGYVKCGDYKE 178
G + WN M+ G++ E + +++ M N ++ +L+ +E
Sbjct: 103 GFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEE 162
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
I ++ +G + + + S++ + A G ++ I K +++ S+I
Sbjct: 163 TTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFD-RIPKPDAVSW---NSVIK 218
Query: 239 MYAKCGAIKEALIVFHG-VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
YAK G + AL +F VEK + + W MI G G KE+L+LF EMQ + PD
Sbjct: 219 GYAKAGKMDIALTLFRKMVEK---NAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPD 275
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
++ LSACA G + + + L K + S ++D ++ G + EA E
Sbjct: 276 NVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFK 335
Query: 358 QMPLEPTASMLGSLLTGCMNHG 379
+ + +L++G HG
Sbjct: 336 NIQ-RKSVQAWTALISGYAYHG 356
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 173/412 (41%), Positives = 263/412 (63%), Gaps = 4/412 (0%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKREL-AVAVHAQI 89
WN +I G+++ +S FV M RAG +P +TY + A G+ + L + VH ++
Sbjct: 90 WNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRV 149
Query: 90 AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
+G DL + N+L+ MY C D+ A +VFDGM + VSW S+L G A+ G+++ AR
Sbjct: 150 VGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEAR 209
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
+F+ MPER+ VSW+A+IDGYV ++EAL +F EM+ A+E T+VSV+ ACA LG
Sbjct: 210 DLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLG 269
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
AL+ G + YM +G+ + + +LIDMY+KCG+I+ AL VF G+ H D W A+
Sbjct: 270 ALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGM--HHRDKFTWTAI 327
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-G 328
I GLA++G+ +E++E+F M V TPDE+TF+G+L+AC H GLV + FF S+ +
Sbjct: 328 ILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYN 387
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
+ P HY C++D L RAG++TEA + I QMP+ P +++ G+LL C HG ++ E+V
Sbjct: 388 IAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVA 447
Query: 389 KKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++L+EL P++ Y+ LSN+YA RW++ R R A+ +G+KK PG S +E
Sbjct: 448 ERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIE 499
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 132/304 (43%), Gaps = 35/304 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L+ LG +D + + + W +I GY + +++ +F +M + VS D
Sbjct: 196 LSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADE 255
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + A +L E+ V +++ G + D F+ N+LI MY CG I A +VF G
Sbjct: 256 FTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKG 315
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + +W +++ G A ++GY +EA+ +F
Sbjct: 316 MHHRDKFTWTAIILGLA--------------------------VNGY-----EEEAIEMF 344
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAK 242
M V +EVT + VL AC H G +D+GR MI+ ++ + +ID+ +
Sbjct: 345 HRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGR 404
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
G I EAL + + IW ++ +HG E EL E +++ + P+
Sbjct: 405 AGKITEALDTIDQMPMTPNST-IWGTLLAACRVHGN-SEIGELVAE-RLLELDPENSMVY 461
Query: 303 GLLS 306
LLS
Sbjct: 462 ILLS 465
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 116/283 (40%), Gaps = 45/283 (15%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+I+ + V + + F W +I G + + ++I +F +M+R +PD +T+
Sbjct: 301 SKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFI 360
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFIS--------------NSLIHMYGSCGD 113
+ L HA + G E F+S +I + G G
Sbjct: 361 GV-----------LTACTHAGLVDKGRE--FFLSMIEAYNIAPNVVHYGCIIDLLGRAGK 407
Query: 114 IVYAREVFDGMP-TKMSVSWNSML-----DGYAKCGEMNMARQVFELMPERNVVSWSALI 167
I A + D MP T S W ++L G ++ GE+ +A ++ EL PE ++V + L
Sbjct: 408 ITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGEL-VAERLLELDPENSMV-YILLS 465
Query: 168 DGYVKCGDYKEALVIFEEMRDVGSKANE-VTLVSVLCACAHLGALDQGRMMLRYMIDKGL 226
+ Y KC +++ + + + G K +L+ + A DQ M + + K
Sbjct: 466 NIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSK-- 523
Query: 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGV-EKHQSDVLIWNA 268
S+I G + VF V EK + VL W++
Sbjct: 524 ------LESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHS 560
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 179/458 (39%), Positives = 271/458 (59%), Gaps = 20/458 (4%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+LSF G++ Y+ ++ + P +F WN + +GYS+ P +SL+++ML V
Sbjct: 52 ILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVK 111
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD TYPFL K R +L +H + K G +S++F N+LI+MY CG I AR +
Sbjct: 112 PDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGI 171
Query: 121 FDGMPTKMSVSWNSMLDGYAK-----------------CGEMNMARQVFELMPERNVVSW 163
FD V+WN+M+ GY + G+++ AR+ F MPER+ VSW
Sbjct: 172 FDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSW 231
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
+A+IDGY++ YKEAL++F EM+ K +E T+VSVL ACA LGAL+ G + Y+
Sbjct: 232 TAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDK 291
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
+ + +LIDMY KCG ++ AL +F+ + Q D W AM+ GLA++G +E+L
Sbjct: 292 NKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLP--QRDKFTWTAMVVGLAINGCGEEAL 349
Query: 284 ELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDA 342
+F++M +TPDE+T++G+LSAC H G+V E FF S+ R G+ P HY CMVD
Sbjct: 350 NMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDL 409
Query: 343 LSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRY 402
L +AG + EA+E I MP++P + + G+LL C H ++AE ++++EL+P++ Y
Sbjct: 410 LGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVY 469
Query: 403 VGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
V N+YA +WD+ R R+ M RG+KK PG S +E
Sbjct: 470 VLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIE 507
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 180/435 (41%), Positives = 270/435 (62%), Gaps = 4/435 (0%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S LG++D + V S + I WN++I G+ + +P +++ LF +M P+ +T
Sbjct: 177 SSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMV 236
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A + E I + G + +L +SN+++ MY CG + AR +FD M K
Sbjct: 237 GVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEK 296
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
VSW +M+DGYAK G+ + AR+VF++MP ++ +W+ALI Y + G KEAL IF E++
Sbjct: 297 DIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQ 356
Query: 188 -DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ +K NEVTL S L ACA LGA+D G + Y+ +G+ L + TSLIDMY+KCG +
Sbjct: 357 LNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHL 416
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
++AL VF+ VE+ DV +W+AMI GLAMHG + +++LF++MQ + P+ +TF LL
Sbjct: 417 EKALEVFYSVERR--DVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLC 474
Query: 307 ACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC+H GLV E FF + G+VP S+HYACMVD L RAG + EA E I +MP+ P+A
Sbjct: 475 ACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSA 534
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
S+ G+LL C +G ++LAE+ +L+E ++ G YV LSN+YA +WD R+ M
Sbjct: 535 SVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHM 594
Query: 426 ETRGVKKYPGWSFVE 440
+ G++K PG S +E
Sbjct: 595 KVSGLEKEPGCSSIE 609
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 186/385 (48%), Gaps = 62/385 (16%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+ + ALS ++DY+CKV + P ++ WNT+IR ++ S P + + +F++ML
Sbjct: 68 LFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQR 127
Query: 61 -PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T+PF+ KA+ ++ A+H + K + SDLFISNSLIH Y S GD+ A
Sbjct: 128 FPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYL 187
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VF + K VSWNSM+ G+ V+ G +EA
Sbjct: 188 VFSKIVEKDIVSWNSMISGF-------------------------------VQGGSPEEA 216
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F+ M+ ++ N VT+V VL ACA L+ GR Y+ G+ + L L +++DM
Sbjct: 217 LQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDM 276
Query: 240 YAKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAMI 270
Y KCG++++A +F +E+ + D+ WNA+I
Sbjct: 277 YVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALI 336
Query: 271 GGLAMHGFVKESLELFTEMQIVGIT-PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
+G KE+L +F E+Q+ T P+E+T L+ACA G + + + K+G+
Sbjct: 337 SSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGI 396
Query: 330 VPKSEHYACMVDALSRAGQVTEAYE 354
++D S+ G + +A E
Sbjct: 397 KLNFHITTSLIDMYSKCGHLEKALE 421
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 189/440 (42%), Positives = 268/440 (60%), Gaps = 12/440 (2%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
GN +YS ++ P IF +NT+I G + + +SI ++ M + G+SPD T+PFL
Sbjct: 55 FGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFL 114
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA RL +L + +H + K G ESD F++ SL+ +YG CG I A +VFD +P K
Sbjct: 115 LKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNV 174
Query: 130 VSWNSMLDGY---AKCGE-MNMARQ---VFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+W +++ GY KC E ++M R+ VF+ M E+++VSWS++I GY G KEAL +
Sbjct: 175 AAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDL 234
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP-LQTSLIDMYA 241
F +M + G + + +V VLCACA LGAL+ G M D+ L P L T+LIDMYA
Sbjct: 235 FFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLM-DRNEFLGNPVLGTALIDMYA 293
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
KCG + A VF G+ K D+++WNA I GLAM G VK + LF +M+ GI PD TF
Sbjct: 294 KCGRMDSAWEVFRGMRK--KDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTF 351
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+GLL AC H GLV E +F S+ + + P+ EHY CMVD L RAG + EA++ + MP
Sbjct: 352 VGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMP 411
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
+E A + G+LL GC H L E V K+L+ L+P + G YV LSN+Y+ +W++A
Sbjct: 412 MEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAK 471
Query: 421 TREAMETRGVKKYPGWSFVE 440
R M RG+KK PG+S++E
Sbjct: 472 IRSIMSERGIKKVPGYSWIE 491
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 183/462 (39%), Positives = 275/462 (59%), Gaps = 38/462 (8%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPN-KSISLFVKMLRAGVSPDHLTYPFLAKAS 73
Y+ +L+ L P + +N +IRG + S N + + + ++ +ML G+ PD+ T PF+ KA
Sbjct: 91 YALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKAC 150
Query: 74 GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
VH Q K G SD+++SN+L+ MY C I AR+VFD P + VSW
Sbjct: 151 AESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWT 210
Query: 134 SMLDGYAK----------------------------------CGEMNMARQVFELMPERN 159
+M+ GY K CG+ N AR+VF+ MP +N
Sbjct: 211 TMIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKN 270
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
VVSW+++I G + G +KE+L +F +M+ +G K ++VTLV+VL +CA+LG L+ G+ +
Sbjct: 271 VVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHA 330
Query: 220 YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
Y+ + + +L+DMYAKCG+I +A VF + ++ DV + AMI GLAMHG
Sbjct: 331 YLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAM--NRKDVYSYTAMIVGLAMHGQG 388
Query: 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYAC 338
++L+LF+EM +GI PDE+TF+G+L+AC+H GLV E +F+ + + P+ EHY C
Sbjct: 389 GKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGC 448
Query: 339 MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398
MVD L RAG + EA EFI MP+EP A +LG+LL C HGK++L E V KK+ +++P
Sbjct: 449 MVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRK 508
Query: 399 DGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
DG YV +SN+Y+ RW +A R+ M+ R ++K PG S +E
Sbjct: 509 DGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIE 550
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 123/274 (44%), Gaps = 39/274 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+ +++ KV + + WN++I G ++ +S+ +F KM R GV PD +T +
Sbjct: 254 GDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVL 313
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ L EL VHA + + +D FI N+L+ MY CG I A VF M K
Sbjct: 314 NSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVY 373
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
S+ +M+ G A G+ +AL +F EM +G
Sbjct: 374 SYTAMIVGLAMHGQGG-------------------------------KALDLFSEMPKMG 402
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS----LIDMYAKCGAI 246
+ +EVT V VL AC+H+G +++GR +Y D L Q ++D+ + G I
Sbjct: 403 IEPDEVTFVGVLTACSHVGLVEEGR---KYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLI 459
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
EA + + D + A++G +HG V+
Sbjct: 460 NEAEEFIRNMPI-EPDAFVLGALLGACKIHGKVE 492
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 171/434 (39%), Positives = 271/434 (62%), Gaps = 6/434 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPDHLTYPF 68
L ++DY+ + L NP +F +N +IR Y+ + +I++F +ML SPD T+PF
Sbjct: 52 LSHVDYATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPF 111
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+ K+ L R L VHA + K G ++ N+LI MY CGD+ A +V++ M +
Sbjct: 112 VIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERD 171
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
+VSWNS++ G+ + G+M AR+VF+ MP R +VSW+ +I+GY + G Y +AL IF EM+
Sbjct: 172 AVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQV 231
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
VG + +E++++SVL ACA LGAL+ G+ + +Y G + +L++MYAKCG I E
Sbjct: 232 VGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDE 291
Query: 249 ALIVFHG-VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A +F+ +EK DV+ W+ MIGGLA HG ++ +F +MQ G+TP+ +TF+G+LSA
Sbjct: 292 AWGLFNQMIEK---DVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSA 348
Query: 308 CAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
CAH GL E +F + + P+ EHY C+VD L R+GQV +A + I +MP++P +
Sbjct: 349 CAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSR 408
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
SLL+ C H L++A + ++L++L+P+ G YV L+N+YA +W+ R+ +
Sbjct: 409 TWNSLLSSCRIHHNLEIAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIR 468
Query: 427 TRGVKKYPGWSFVE 440
++ +KK PG S +E
Sbjct: 469 SKRIKKTPGCSLIE 482
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 140/318 (44%), Gaps = 41/318 (12%)
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS-----MLDGYAKCGEMNMARQVFEL 154
+ N + +C I +++ + K+S+S ++ MLD ++ A +F+
Sbjct: 6 LENRFVTTLRNCPKIAELKKIHAHI-VKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQ 64
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA-NEVTLVSVLCACAHLGALDQ 213
+ NV S++A+I Y + A+ +F +M S + ++ T V+ +CA L
Sbjct: 65 LENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRL 124
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA----- 268
G+ + ++ G + +LIDMY KCG + A V+ E + D + WN+
Sbjct: 125 GQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYE--EMTERDAVSWNSLISGH 182
Query: 269 --------------------------MIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
MI G A G ++L +F EMQ+VGI PDEI+ +
Sbjct: 183 VRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVI 242
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+L ACA G + + K K G + + + +V+ ++ G + EA+ QM +E
Sbjct: 243 SVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQM-IE 301
Query: 363 PTASMLGSLLTGCMNHGK 380
+++ G NHGK
Sbjct: 302 KDVISWSTMIGGLANHGK 319
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 189/463 (40%), Positives = 271/463 (58%), Gaps = 39/463 (8%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
+ + S +V + P +F WN +I+ ++ P K+I L+ +M+ A P+ TYP + K
Sbjct: 86 SFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLK 145
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV---------------- 115
A V VHA + K G D I +S I MY S G +V
Sbjct: 146 ACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAV 205
Query: 116 ----------------YAREVFDGMPTKMSVS-WNSMLDGYAKCGEMNMARQVFELMPER 158
ARE+F+GMP + +S WN+M+ G+++CG + +AR+ F+ M ER
Sbjct: 206 CWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKER 265
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
+ +SWSA+IDGY++ G + EAL IF +M+ + + L SVL ACA+LGALDQGR +
Sbjct: 266 DEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIH 325
Query: 219 RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGF 278
Y + L L TSL+DMYAKCG I A VF + +V WNAMIGGLAMHG
Sbjct: 326 TYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS--NKEVSSWNAMIGGLAMHGR 383
Query: 279 VKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYA 337
+++++LF++M I P+EITF+G+L+ACAHGGLV + F S+ K G+ P+ EHY
Sbjct: 384 AEDAIDLFSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYG 440
Query: 338 CMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397
C+VD L RAG +TEA + + +P EPT ++ G+LL C HG ++L E VGK L+EL+P
Sbjct: 441 CIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQ 500
Query: 398 HDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ GRY LSN+YA RW+E R+ M+ RG+K PG S ++
Sbjct: 501 NSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIID 543
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 155/355 (43%), Gaps = 44/355 (12%)
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
HA I +TG+ D +I+ SL+ Y + + T +S+ S L
Sbjct: 54 HALILRTGHLQDSYIAGSLVKSYAN-------------VSTNRYLSFESSL--------- 91
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
+VF+ + + NV W+ +I ++ + +A++++ EM + N+ T +VL AC
Sbjct: 92 ----RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKAC 147
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
+ G + +G + +++ GL + +S I MYA G + EA + + + D +
Sbjct: 148 SDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD-KGGEVDAVC 206
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDE---ITFLGLLSACAHGGLVMEAWYFFK 322
WNAMI G G V+ + ELF M PD T+ ++S + G+V A FF
Sbjct: 207 WNAMIDGYLRFGEVEAARELFEGM------PDRSMISTWNAMISGFSRCGMVEVAREFFD 260
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE---PTASMLGSLLTGCMNHG 379
+ +R + ++ M+D + G EA E QM E P +L S+L+ C N G
Sbjct: 261 EMKERDEIS----WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLG 316
Query: 380 KLDLAEIVGKKLVELQPDHDGRY-VGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
LD + DG L ++YA R D A E M + V +
Sbjct: 317 ALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSW 371
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 105/278 (37%), Gaps = 36/278 (12%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S S G ++ + + + W+ +I GY + +++ +F +M + + P
Sbjct: 243 ISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRK 302
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
P + A L + +H + + D + SL+ MY CG I A EVF+
Sbjct: 303 FVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEK 362
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP-ERNVVSWSALIDGYVKCGDYKEALVI 182
M K SWN+M+ G A G A +F M N +++ +++ G ++ L I
Sbjct: 363 MSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDINPNEITFVGVLNACAHGGLVQKGLTI 422
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F MR + G+ + ++D+ +
Sbjct: 423 FNSMRK----------------------------------EYGVEPQIEHYGCIVDLLGR 448
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G + EA V + + +W A++G HG V+
Sbjct: 449 AGLLTEAEKVVSSIPTEPTPA-VWGALLGACRKHGNVE 485
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 171/433 (39%), Positives = 273/433 (63%), Gaps = 5/433 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML--RAGVSPDHLTYPF 68
G+I+Y+ V + + NP +F WNT+IRG+S+S P+ +ISLF+ M+ P LTYP
Sbjct: 43 GDINYAYLVFTQIRNPNLFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPS 102
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+ KA +L +H ++ K G E+D FI N++++MY +CG + A+ +FDG
Sbjct: 103 VFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFD 162
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
V+WN+M+ G AKCGE++ +R++F+ M RN VSW+++I GYV+ G + EA+ +F M++
Sbjct: 163 VVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQE 222
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G K +E T+VS+L ACA LGAL QG + Y++ +L + T++IDMY+KCG+I +
Sbjct: 223 EGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDK 282
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
AL VF K + WN++I GLAM G E++ LF++++ + PD ++F+G+L+AC
Sbjct: 283 ALQVFKSAPK--KGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTAC 340
Query: 309 AHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
H G+V A +F + + + P +HY+CMVD L RAG + EA E I MP+ P A +
Sbjct: 341 NHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAII 400
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
GSLL+ C +G +++A+ K++ EL P+ ++ LSNVYA ++EA R +++
Sbjct: 401 WGSLLSSCREYGNIEMAKQAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKE 460
Query: 428 RGVKKYPGWSFVE 440
+ + K PG S +E
Sbjct: 461 KQMDKEPGCSLIE 473
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 145/348 (41%), Gaps = 66/348 (18%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGS-CGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
+HAQ+ KTG D ++ ++ S GDI YA VF + WN+++ G+++
Sbjct: 15 IHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIRGFSQSS 74
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
+ A +F ID ++F ++ +T SV
Sbjct: 75 TPHNAISLF--------------ID------------MMFT---SPTTQPQRLTYPSVFK 105
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
A A LG +G + +I GL +Q ++++MY CG + EA +F G DV
Sbjct: 106 AYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGF--DV 163
Query: 264 LIWNAMIGGLA--------------------------MHGFVK-----ESLELFTEMQIV 292
+ WN MI GLA + G+V+ E++ELF+ MQ
Sbjct: 164 VTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEE 223
Query: 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352
GI P E T + LL+ACA G + + + + K S ++D S+ G + +A
Sbjct: 224 GIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKA 283
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL--VELQPDH 398
+ P + S SL+ G G+ + A + KL L+PDH
Sbjct: 284 LQVFKSAP-KKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDH 330
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 125/301 (41%), Gaps = 35/301 (11%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
L+ G ID S ++ + WN++I GY + +++ LF +M G+ P T
Sbjct: 173 LAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTM 232
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
L A L +H I K + + + ++I MY CG I A +VF P
Sbjct: 233 VSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPK 292
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
K WNS++ G A G N EA+ +F ++
Sbjct: 293 KGLSCWNSLILGLAMSGRGN-------------------------------EAVRLFSKL 321
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGA 245
K + V+ + VL AC H G +D+ + M + + ++ + ++D+ + G
Sbjct: 322 ESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGL 381
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
++EA + + + D +IW +++ +G ++ + + ++ + P+E + LL
Sbjct: 382 LEEAEELIKSMPVN-PDAIIWGSLLSSCREYGNIEMAKQ--AAKRVNELDPNESSSFILL 438
Query: 306 S 306
S
Sbjct: 439 S 439
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 83/179 (46%), Gaps = 7/179 (3%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+ID + +V + WN++I G + S N+++ LF K+ + + PDH+++
Sbjct: 275 SKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFI 334
Query: 68 FLAKASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A + A +++T E + + ++ + G G + A E+ MP
Sbjct: 335 GVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPV 394
Query: 127 KM-SVSWNSMLDGYAKCGEMNMARQ----VFELMPERNVVSWSALIDGYVKCGDYKEAL 180
++ W S+L + G + MA+Q V EL P + S+ L + Y ++EA+
Sbjct: 395 NPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPNES-SSFILLSNVYAAHNHFEEAI 452
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 177/428 (41%), Positives = 259/428 (60%), Gaps = 3/428 (0%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+ Y+ V P F WN +IRG+S S P +S+ L+ +ML + + T+P L KA
Sbjct: 65 LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKA 124
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
L+ E +HAQI K GYE+D++ NSLI+ Y G+ A +FD +P VSW
Sbjct: 125 CSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSW 184
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
NS++ GY K G+M++A +F M E+N +SW+ +I GYV+ KEAL +F EM++ +
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE 244
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ V+L + L ACA LGAL+QG+ + Y+ + + L LIDMYAKCG ++EAL V
Sbjct: 245 PDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEV 304
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F ++K V W A+I G A HG +E++ F EMQ +GI P+ ITF +L+AC++ G
Sbjct: 305 FKNIKK--KSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTG 362
Query: 313 LVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
LV E F S+ + + P EHY C+VD L RAG + EA FI +MPL+P A + G+L
Sbjct: 363 LVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGAL 422
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
L C H ++L E +G+ L+ + P H GRYV +N++A+ K+WD+A TR M+ +GV
Sbjct: 423 LKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVA 482
Query: 432 KYPGWSFV 439
K PG S +
Sbjct: 483 KVPGCSTI 490
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 130/319 (40%), Gaps = 68/319 (21%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-------------- 56
GN + + + P WN+VI+GY K+ + +++LF KM
Sbjct: 164 GNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYV 223
Query: 57 -----------------AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
+ V PD+++ A +L E +H+ + KT D
Sbjct: 224 QADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV 283
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
+ LI MY CG++ A EVF + K +W
Sbjct: 284 LGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAW--------------------------- 316
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
+ALI GY G +EA+ F EM+ +G K N +T +VL AC++ G +++G+++
Sbjct: 317 ----TALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFY 372
Query: 220 YM-IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGF 278
M D L T+ ++D+ + G + EA + + + +IW A++ +H
Sbjct: 373 SMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPL-KPNAVIWGALLKACRIH-- 429
Query: 279 VKESLELFTEMQIVGITPD 297
+++EL E+ + I D
Sbjct: 430 --KNIELGEEIGEILIAID 446
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 136/312 (43%), Gaps = 14/312 (4%)
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIH--MYGSCGDIV-YAREVFDGMPTKMSVS 131
R +K+E +HA++ KTG D + + + + D + YA+ VFDG +
Sbjct: 23 RCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFL 82
Query: 132 WNSMLDGYAKCGEMNMARQVFELM----PERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
WN M+ G++ E + +++ M N ++ +L+ ++E I ++
Sbjct: 83 WNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQIT 142
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
+G + + + S++ + A G ++ D+ S+I Y K G +
Sbjct: 143 KLGYENDVYAVNSLINSYAVTGNFKLAHLLF----DRIPEPDDVSWNSVIKGYVKAGKMD 198
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
AL +F + + + + W MI G KE+L+LF EMQ + PD ++ LSA
Sbjct: 199 IALTLFRKMA--EKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSA 256
Query: 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
CA G + + + L K + S ++D ++ G++ EA E + + +
Sbjct: 257 CAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIK-KKSVQA 315
Query: 368 LGSLLTGCMNHG 379
+L++G HG
Sbjct: 316 WTALISGYAYHG 327
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 178/468 (38%), Positives = 272/468 (58%), Gaps = 34/468 (7%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHL 64
A+S + Y+ ++L P F +NT++RGYS+S P+ S+++FV+M+R G + PD
Sbjct: 215 AISISDALPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSF 274
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
++ F+ KA+ +H Q K G +S LF++ +LI MYG CG + +AR+VFD M
Sbjct: 275 SFAFVVKAAANFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEM 334
Query: 125 PT---------------------------KMSV----SWNSMLDGYAKCGEMNMARQVFE 153
P KM V SWN ML GY K GE+ A+++F
Sbjct: 335 PQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFS 394
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
MP R+ VSWS +I G+ G + E+ F E+ + NEV+L VL AC+ GA +
Sbjct: 395 EMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEF 454
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
G+ + ++ G S + + +LIDMY++CG + A +VF G+++ +S ++ W +MI GL
Sbjct: 455 GKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRS-IVSWTSMIAGL 513
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PK 332
AMHG +E++ +F EM G+ PDEI+F+ LL AC+H GL+ E +F + + + P
Sbjct: 514 AMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPA 573
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV 392
EHY CMVD R+G++ +AY FICQMP+ PTA + +LL C +HG ++LAE V ++L
Sbjct: 574 VEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLN 633
Query: 393 ELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
EL P++ G V LSNVYA +W + + R++M + +KK WS VE
Sbjct: 634 ELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITAWSLVE 681
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 190/437 (43%), Positives = 270/437 (61%), Gaps = 7/437 (1%)
Query: 8 SYLGNIDYSCKVLSHLSNP-RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
S LG Y+ + + L++P IF +NT+IR S S P+ SI LF ++ A + PD ++
Sbjct: 54 SSLGFSLYAYSLFTSLTHPPNIFLYNTIIRALSLSPQPSLSIFLFNRIQSARLRPDSYSF 113
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP- 125
PF KA RL+ + + H+Q + G S L + SLI MY S I AR++FDG+P
Sbjct: 114 PFALKAVIRLSATKTGLQFHSQAIRFGLHSHLHVLVSLIRMYSS-SHISDARKLFDGIPL 172
Query: 126 TKMSVS-WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
T +V+ WN+ML YAK +M A+ +F+ MP+RN++SW+ALI GY +A+ IF
Sbjct: 173 TARNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFR 232
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M+ +E+TL++VL ACA LGAL+ G + Y+ GL +PL +LIDMYAK G
Sbjct: 233 TMQLQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHRNVPLHNALIDMYAKSG 292
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
IK AL++F + KH++ ++ W MI GLA+HG ++LE+F+ M+ + P+EITF+ +
Sbjct: 293 NIKRALLIFESM-KHKT-IVTWTTMIAGLALHGLGTQALEMFSRMERDRVKPNEITFIAV 350
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LSAC+H GLV A FF ++ R + PK EHY CM+D L RAG + EA + + QMP EP
Sbjct: 351 LSACSHVGLVQLARSFFTNMRSRYTIQPKIEHYGCMIDLLGRAGYLQEAQQLLQQMPFEP 410
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
A++ GSLL HG L E K L+EL+P++ G Y LSN+YA RW +R R+
Sbjct: 411 NAAIWGSLLAASYTHGDAMLGERTLKHLIELEPNNSGNYALLSNIYASLGRWKASRIVRK 470
Query: 424 AMETRGVKKYPGWSFVE 440
M RGVKK PG SF+E
Sbjct: 471 MMRDRGVKKIPGGSFIE 487
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 183/476 (38%), Positives = 279/476 (58%), Gaps = 42/476 (8%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR------AG 58
S++ G ++ V + +P F +NT+IRG + S P ++S++ +M R G
Sbjct: 50 SSVGVRGGTAHARLVFDRIPHPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGG 109
Query: 59 VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD----- 113
V PD T+PF+ +A + E VHA + K G ESD F+ N+LI M+ +CGD
Sbjct: 110 VRPDKRTFPFVLRACAAMGASETGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAA 169
Query: 114 --------------------------IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
I ARE+FD P K VSWN M+ YAK G+M
Sbjct: 170 ALFDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAP 229
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
AR++F+ P+R+VVSW+A+I GYV+CG +K+A+ +FE+M+ +G K + VT++S+L ACA
Sbjct: 230 ARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSLLSACAD 289
Query: 208 LGALDQGRMMLRYMIDK--GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
G +D GR + R++ + + + L +LIDMYAKCG++ AL VF ++ +V
Sbjct: 290 SGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLMQ--DKNVST 347
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
WN++IGGLA+HG V E++++F +M + PDEITF+ +L AC+HGG+V + +F +
Sbjct: 348 WNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVACSHGGMVDKGHEYFNLMQ 407
Query: 326 KRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
+R M+ P +HY CMVD LSRAG + EA+EFI M +EP + +LL C HG+L+LA
Sbjct: 408 QRYMIEPNVKHYGCMVDMLSRAGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGELELA 467
Query: 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
E ++L++ + D G +V LSN+YA W + R+ M+ GV K G + V+
Sbjct: 468 EHANQELLKARSDASGDFVLLSNIYASVGEWLGSENMRKLMDDSGVNKEAGCAVVD 523
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 176/432 (40%), Positives = 264/432 (61%), Gaps = 12/432 (2%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP--------DHLTYPFLA 70
V + + P + N +I+ Y+++ ++ ++V+MLR P D TYPFL
Sbjct: 64 VFAQIPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLL 123
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA G LA L VHA +A++G ES + NSLI MY CGD+ AR+ FDGM K V
Sbjct: 124 KACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVV 183
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+++ +A+ G+M AR++F MP++ VVSW+AL+ GY GD+ A+ +F M+ G
Sbjct: 184 SWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEG 243
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ ++V++V+VL ACA LGAL+ GR + Y G+ + + +L++MYAKCG I+EAL
Sbjct: 244 FEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEAL 303
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACA 309
+FHG+ + DV+ W+ IGGLA HG +E++ LF M G + P+ ITF+GLLSAC+
Sbjct: 304 QLFHGMS--EKDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITFVGLLSACS 361
Query: 310 HGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E + + + G+ P EHY C+VD L R+G++ A + I MP+ P +
Sbjct: 362 HAGLVDEGLRYLDQMKEDYGVEPGVEHYGCVVDLLGRSGRIQRALDTIRGMPVPPDGKIW 421
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
GSLL+ C +HG ++ A + ++LVEL+P G V L+NVY RW E +TR+ + +R
Sbjct: 422 GSLLSACRSHGDVETAVVAAERLVELEPGDVGNLVMLANVYGAAGRWGEVASTRKEIRSR 481
Query: 429 GVKKYPGWSFVE 440
+K PG S +E
Sbjct: 482 STRKTPGCSMIE 493
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 138/307 (44%), Gaps = 40/307 (13%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SA + +G + + ++ + + + W ++ GY+ + ++ +F M G PD
Sbjct: 189 ISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDD 248
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
++ + A +L EL ++A +K G ++I N+L+ MY CG I A ++F G
Sbjct: 249 VSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEALQLFHG 308
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M K +SW++ + G A G A ++FE+M +E V+
Sbjct: 309 MSEKDVISWSTAIGGLAAHGRAREAVRLFEVMD--------------------REGRVM- 347
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI----DKGLSLTLPLQTSLIDM 239
N +T V +L AC+H G +D+G LRY+ D G+ + ++D+
Sbjct: 348 ---------PNGITFVGLLSACSHAGLVDEG---LRYLDQMKEDYGVEPGVEHYGCVVDL 395
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
+ G I+ AL G+ D IW +++ HG V+ + + ++V + P ++
Sbjct: 396 LGRSGRIQRALDTIRGMPV-PPDGKIWGSLLSACRSHGDVETA--VVAAERLVELEPGDV 452
Query: 300 TFLGLLS 306
L +L+
Sbjct: 453 GNLVMLA 459
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 188/478 (39%), Positives = 278/478 (58%), Gaps = 40/478 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR---- 56
+L SA++ G I ++ V + P +F +NT+IRG + + P ++SL+ +M R
Sbjct: 46 LLFASAVAVRGAIAHAYLVFDQIPRPDLFMYNTLIRGAAHTAAPRDAVSLYARMARRGSC 105
Query: 57 AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG---- 112
GV PD +T+PF+ +A + VHA + K G ESD F+ N+LI M+ SCG
Sbjct: 106 GGVRPDKITFPFVLRACTAMGAGGTGAQVHAHVVKAGCESDAFVRNALIGMHASCGELGV 165
Query: 113 ---------------------------DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
DIV AR++FD P K VSWN M+ YAK GEM
Sbjct: 166 ASALFDGRAREDAVAWSAMITGCARRGDIVAARKLFDECPVKDHVSWNVMITAYAKRGEM 225
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
AR +F +PER+VVSW+A+I G+V+CG + A+ +FE+M+ +G K + VT++S+L AC
Sbjct: 226 APARVLFNRIPERDVVSWNAMISGHVRCGSHVYAMELFEQMQRMGQKPDVVTMLSLLSAC 285
Query: 206 AHLGALDQGRMMLRYMIDKGL--SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
A G +D GR + + + L T+ L +LIDMYAKCG++K AL VF + DV
Sbjct: 286 ADSGDIDVGRRLHSSLSEMFLRTGFTVILGNALIDMYAKCGSMKSALQVFWVMR--DKDV 343
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
WN++IGGLA+HG V ES+++F +M + PDEITF+ +L AC+HGG+V + +F
Sbjct: 344 STWNSIIGGLALHGHVLESIDVFKKMLKEKVRPDEITFVAVLIACSHGGMVDKGREYFNL 403
Query: 324 LGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ + P +HY CMVD L RAG + EA+EFI M +EP + + +LL C HG+++
Sbjct: 404 MQHHYRIEPNVKHYGCMVDMLGRAGLLKEAFEFIDTMKVEPNSVIWRTLLGACRVHGEIE 463
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
LAE ++L++ + D G YV LSN+YA W E+ R+ M+ GV K G + V+
Sbjct: 464 LAEHANRQLLKARNDESGDYVLLSNIYASAGEWSESEKMRKLMDDSGVNKQAGRTVVD 521
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 189/463 (40%), Positives = 271/463 (58%), Gaps = 39/463 (8%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
+ + S +V + P +F WN +I+ ++ P K+I L+ +M+ A P+ TYP + K
Sbjct: 87 SFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLK 146
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV---------------- 115
A V VHA + K G D I +S I MY S G +V
Sbjct: 147 ACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAV 206
Query: 116 ----------------YAREVFDGMPTKMSVS-WNSMLDGYAKCGEMNMARQVFELMPER 158
ARE+F+GMP + +S WN+M+ G+++CG + +AR+ F+ M ER
Sbjct: 207 CWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKER 266
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
+ +SWSA+IDGY++ G + EAL IF +M+ + + L SVL ACA+LGALDQGR +
Sbjct: 267 DEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIH 326
Query: 219 RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGF 278
Y + L L TSL+DMYAKCG I A VF + +V WNAMIGGLAMHG
Sbjct: 327 TYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS--NKEVSSWNAMIGGLAMHGR 384
Query: 279 VKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYA 337
+++++LF++M I P+EITF+G+L+ACAHGGLV + F S+ K G+ P+ EHY
Sbjct: 385 AEDAIDLFSKMDIY---PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYG 441
Query: 338 CMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397
C+VD L RAG +TEA + + +P EPT ++ G+LL C HG ++L E VGK L+EL+P
Sbjct: 442 CIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQ 501
Query: 398 HDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ GRY LSN+YA RW+E R+ M+ RG+K PG S ++
Sbjct: 502 NSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIID 544
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 94/355 (26%), Positives = 156/355 (43%), Gaps = 44/355 (12%)
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
HA I +TG+ D +I+ SL+ Y + + T +S+ S L
Sbjct: 55 HALILRTGHLQDSYIAGSLVKSYAN-------------VSTNRYLSFESSL--------- 92
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
+VF+ + + NV W+ +I ++ + +A++++ EM S+ N+ T +VL AC
Sbjct: 93 ----RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKAC 148
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
+ G + +G + +++ GL + +S I MYA G + EA + + + D +
Sbjct: 149 SDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD-KGGEVDAVC 207
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDE---ITFLGLLSACAHGGLVMEAWYFFK 322
WNAMI G G V+ + ELF M PD T+ ++S + G+V A FF
Sbjct: 208 WNAMIDGYLRFGEVEAARELFEGM------PDRSMISTWNAMISGFSRCGMVEVAREFFD 261
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE---PTASMLGSLLTGCMNHG 379
+ +R + ++ M+D + G EA E QM E P +L S+L+ C N G
Sbjct: 262 EMKERDEIS----WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLG 317
Query: 380 KLDLAEIVGKKLVELQPDHDGRY-VGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
LD + DG L ++YA R D A E M + V +
Sbjct: 318 ALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSW 372
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 109/278 (39%), Gaps = 36/278 (12%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S S G ++ + + + W+ +I GY + +++ +F +M + + P
Sbjct: 244 ISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRK 303
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
P + A L + +H + + D + SL+ MY CG I A EVF+
Sbjct: 304 FVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEK 363
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M K SWN+M+ G A G A +F M D Y
Sbjct: 364 MSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM------------DIY------------- 398
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAK 242
NE+T V VL ACAH G + +G + M + G+ + ++D+ +
Sbjct: 399 ---------PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGR 449
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G + EA V + + +W A++G HG V+
Sbjct: 450 AGLLTEAEKVVSSIPTEPTPA-VWGALLGACRKHGNVE 486
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/437 (38%), Positives = 267/437 (61%), Gaps = 11/437 (2%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP-------DHLT 65
+ ++ +V + + +P + N +I+ Y+++ +++++++MLR SP D T
Sbjct: 62 VTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFT 121
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
YPFL KA G A EL VH + ++G +S + NSLI MY GD+ A +VFD M
Sbjct: 122 YPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMR 181
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ VSWN ++ +A+ G+M A +F MP++ +V+W+A++ GY GDY A+ F
Sbjct: 182 ERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRS 241
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M+ G + ++V++V+VL ACA LGAL+ GR + Y G+ + + +L++MYAKCG
Sbjct: 242 MQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGC 301
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGL 304
I +AL +F G+ DV+ W+ +IGGLA HG E++ LFTEM+ G + P+ ITF+GL
Sbjct: 302 IDQALQLFDGMA--DKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGL 359
Query: 305 LSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LSAC++ GLV E F + G+ P EHY C+VD L R+GQ+ A + + MP+
Sbjct: 360 LSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPA 419
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
A + GSLL+ C +HG +D A + ++LVEL+PD G V L+NVYA +RW + +TR+
Sbjct: 420 DAKVWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRK 479
Query: 424 AMETRGVKKYPGWSFVE 440
A+ +R ++K PG S +E
Sbjct: 480 AIRSRSMRKTPGCSLIE 496
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 134/305 (43%), Gaps = 36/305 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SA + LG + + + + + + I W ++ GY+ + ++ F M G PD
Sbjct: 192 ISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDD 251
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
++ + A +L EL ++A + G + I N+L+ MY CG I A ++FDG
Sbjct: 252 VSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDG 311
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M K +SW++++ G A G + EA+ +F
Sbjct: 312 MADKDVISWSTVIGGLAAHGRAH-------------------------------EAVWLF 340
Query: 184 EEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYA 241
EM G + N +T V +L AC++ G +D+G M D G+ + ++D+
Sbjct: 341 TEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLG 400
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
+ G I+ AL + + +D +W +++ HG V + + ++V + PD++
Sbjct: 401 RSGQIRRALDLVRDMPV-PADAKVWGSLLSACRSHGDVDTA--VLAAERLVELEPDDVGN 457
Query: 302 LGLLS 306
L +L+
Sbjct: 458 LVMLA 462
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 176/467 (37%), Positives = 268/467 (57%), Gaps = 38/467 (8%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
L ++DY+ + +P +F +N +IRG +++ S+S FV MLR + PD LT PF+
Sbjct: 85 LKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFV 144
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMY--------------------- 108
K+ L L +H + K G E D F+ SL+ MY
Sbjct: 145 LKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNK 204
Query: 109 ------------GSC--GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
G C GD+ A +F+ MP + + SWNS+++G+ + G+++ AR++F
Sbjct: 205 AESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQ 264
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQG 214
MPE+NVVSW+ +I+G+ + GD+++AL +F M + G + N++T+VS L AC +GAL G
Sbjct: 265 MPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVG 324
Query: 215 RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLA 274
+ Y+ G L + T+L+DMYAKCG IK A VF VE D+L W+ MI G A
Sbjct: 325 ERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVF--VETKGKDLLTWSVMIWGWA 382
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKS 333
+HG ++L+ F +M+ GI PDE+ FL +L+AC+H G V + FF+S+ + P
Sbjct: 383 IHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTM 442
Query: 334 EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
+HY +VD L RAG++ EA FI MP+ P + G+L C H +++AE+ +KL++
Sbjct: 443 KHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQ 502
Query: 394 LQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L+P H G YV LSNVYA RW++ R M+ RGV+K PGWS++E
Sbjct: 503 LEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIE 549
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/437 (38%), Positives = 267/437 (61%), Gaps = 11/437 (2%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP-------DHLT 65
+ ++ +V + + +P + N +I+ Y+++ +++++++MLR SP D T
Sbjct: 62 VTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFT 121
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
YPFL KA G A EL VH + ++G +S + NSLI MY GD+ A +VFD M
Sbjct: 122 YPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMR 181
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ VSWN ++ +A+ G+M A +F MP++ +V+W+A++ GY GDY A+ F
Sbjct: 182 ERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRS 241
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M+ G + ++V++V+VL ACA LGAL+ GR + Y G+ + + +L++MYAKCG
Sbjct: 242 MQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGC 301
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGL 304
I +AL +F G+ DV+ W+ +IGGLA HG E++ LFTEM+ G + P+ ITF+GL
Sbjct: 302 IDQALQLFDGMA--DKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGL 359
Query: 305 LSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LSAC++ GLV E F + G+ P EHY C+VD L R+GQ+ A + + MP+
Sbjct: 360 LSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPA 419
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
A + GSLL+ C +HG +D A + ++LVEL+PD G V L+NVYA +RW + +TR+
Sbjct: 420 DAKVWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRK 479
Query: 424 AMETRGVKKYPGWSFVE 440
A+ +R ++K PG S +E
Sbjct: 480 AIRSRSMRKTPGCSLIE 496
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 134/305 (43%), Gaps = 36/305 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SA + LG + + + + + + I W ++ GY+ + ++ F M G PD
Sbjct: 192 ISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDD 251
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
++ + A +L EL ++A + G + I N+L+ MY CG I A ++FDG
Sbjct: 252 VSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDG 311
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M K +SW++++ G A G + EA+ +F
Sbjct: 312 MADKDVISWSTVIGGLAAHGRAH-------------------------------EAVWLF 340
Query: 184 EEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYA 241
EM G + N +T V +L AC++ G +D+G M D G+ + ++D+
Sbjct: 341 TEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLG 400
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
+ G I+ AL + + +D +W +++ HG V + + ++V + PD++
Sbjct: 401 RSGQIRRALDLVRDMPV-PADAKVWGSLLSACRSHGDVDTA--VLAAERLVELEPDDVGN 457
Query: 302 LGLLS 306
L +L+
Sbjct: 458 LVMLA 462
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 179/431 (41%), Positives = 261/431 (60%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN++ +CK+ + + + W+ +I Y +++ +++ LF +M G+ D + +
Sbjct: 237 GNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVL 296
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A RL VH + K G E+ + + N+LIHMY SC ++V A+++F +
Sbjct: 297 SACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQI 356
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNSM+ GY KCGE+ AR +F+ MP+++ VSWSA+I GY + + E LV+F+EM+ G
Sbjct: 357 SWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEG 416
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+K +E LVSV+ AC HL ALDQG+ + Y+ GL + + L T+LI+MY K G +++AL
Sbjct: 417 TKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDAL 476
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF G+E + V WNA+I GLAM+G V +SL+ F+EM+ G+TP+EITF+ +L AC H
Sbjct: 477 EVFKGLE--EKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRH 534
Query: 311 GGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E F S+ + + P +HY CMVD L RAG + EA E I MP+ P S G
Sbjct: 535 MGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWG 594
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C +G + E +G+KLVEL PDHDG V LSN+YA W + R M G
Sbjct: 595 ALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHG 654
Query: 430 VKKYPGWSFVE 440
V K PG S +E
Sbjct: 655 VVKTPGCSMIE 665
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/445 (31%), Positives = 218/445 (48%), Gaps = 67/445 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L FS NI+ S ++ SH+ NP F NT+++GY + +P K+I ++ ML + V+
Sbjct: 64 LLKFSTELPFININQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVA 123
Query: 61 PDHLTYPFLAKA-SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
D+ TYP L ++ S RLA+ + + + K G++SD++I N+LI+MY CG++ AR+
Sbjct: 124 ADNYTYPILFQSCSIRLAEFD-GKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARK 182
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNV------------------- 160
VFDG VSWNSML GY G + A+ V++ MPERNV
Sbjct: 183 VFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEA 242
Query: 161 ------------VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
VSWSALI Y + Y+EAL++F+EM G +EV ++SVL AC+ L
Sbjct: 243 CKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRL 302
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA--------------------------- 241
+ G+++ ++ G+ + LQ +LI MY+
Sbjct: 303 LVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMI 362
Query: 242 ----KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
KCG I++A +F + D + W+AMI G A E+L LF EMQI G PD
Sbjct: 363 SGYVKCGEIEKARALFDSMP--DKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPD 420
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
E + ++SAC H + + + + K G+ +++ + G V +A E
Sbjct: 421 ETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFK 480
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLD 382
+ E S +L+ G +G +D
Sbjct: 481 GLE-EKGVSTWNALILGLAMNGLVD 504
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 85/188 (45%), Gaps = 9/188 (4%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG ++ + +V L + WN +I G + + +KS+ F +M GV+P+ +T+ +
Sbjct: 469 LGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAV 528
Query: 70 AKASGRLA-KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A + E ++ I + ++ ++ + G G + A E+ + MP
Sbjct: 529 LGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAP 588
Query: 129 SVS-WNSMLDGYAKCGEMN----MARQVFELMPERNVVSWSALIDG-YVKCGDYKEALVI 182
VS W ++L K G+ + R++ EL P+ + ++ L+ Y G++ + L +
Sbjct: 589 DVSTWGALLGACKKYGDNETGERIGRKLVELHPDHD--GFNVLLSNIYASKGNWVDVLEV 646
Query: 183 FEEMRDVG 190
MR G
Sbjct: 647 RGMMRQHG 654
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 343 bits (881), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 176/473 (37%), Positives = 272/473 (57%), Gaps = 34/473 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L A+S ++DY+C++ + NP +F NT+IRG +S P S+ F++M R S
Sbjct: 43 LLHHCAISLSDSLDYACRLFRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFS 102
Query: 61 P-DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P D ++ F+ KA+ L + + +H Q G ++ LF+ +LI MYG CG + +AR+
Sbjct: 103 PPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARK 162
Query: 120 VFDGMPTKMSV-------------------------------SWNSMLDGYAKCGEMNMA 148
VFD MP ++ SWN ML GY K GE+ +A
Sbjct: 163 VFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELA 222
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
R++F MP ++ VSWS +I G+ G ++EA F E++ G + NE +L VL ACA
Sbjct: 223 REMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQA 282
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
GAL+ G+++ ++ GL+ + + +L+D Y+KCG + A +VF + ++ +++ W +
Sbjct: 283 GALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERI-MNERNIVSWTS 341
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW-YFFKSLGKR 327
M+ LAMHG +E++ +F +M+ GI PDEI F+ LL AC+H GLV + YF K G
Sbjct: 342 MMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMY 401
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ P EHY CMVD RAGQ+ +AYEF+CQMP+ TA + +LL C HG + LAE V
Sbjct: 402 NIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQV 461
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++L EL P++ +V LSN YA+ +W +A + R +M + + K PGWS +E
Sbjct: 462 KERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIE 514
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 343 bits (881), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 176/468 (37%), Positives = 269/468 (57%), Gaps = 34/468 (7%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHL 64
A+S + Y+ ++L P F +NT++RGYS+S P+ S+++FV+M+R G V PD
Sbjct: 40 AISISDALPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSF 99
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG------------ 112
++ F+ KA +H Q K G ES LF+ +LI MYG CG
Sbjct: 100 SFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEM 159
Query: 113 -------------------DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFE 153
D+ ARE+FD M + SWN ML GY K GE+ A+++F
Sbjct: 160 HQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFS 219
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
MP R+ VSWS +I G G + E+ + F E++ G NEV+L VL AC+ G+ +
Sbjct: 220 EMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEF 279
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
G+++ ++ G S + + +LIDMY++CG + A +VF G+++ + ++ W +MI GL
Sbjct: 280 GKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRC-IVSWTSMIAGL 338
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PK 332
AMHG +E++ LF EM G+TPD I+F+ LL AC+H GL+ E +F + + + P+
Sbjct: 339 AMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPE 398
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV 392
EHY CMVD R+G++ +AY+FICQMP+ PTA + +LL C +HG ++LAE V ++L
Sbjct: 399 IEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLN 458
Query: 393 ELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
EL P++ G V LSN YA +W + + R++M + +KK WS VE
Sbjct: 459 ELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVE 506
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 343 bits (881), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 178/440 (40%), Positives = 255/440 (57%), Gaps = 65/440 (14%)
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+TYPF+ KA + + VH + K+G+E D +I NSLIH+Y + D+ A+++F
Sbjct: 1 MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60
Query: 124 MPTKMSVSWNSMLDGYAKCGEM-------------------------------NMARQVF 152
+ VSWN+M+DGY K GEM + A+++F
Sbjct: 61 CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLF 120
Query: 153 ELMPERNVVSWSALIDGYVKCGDYK-------------------------------EALV 181
+ MPERN+VSW++++ G+VKCG+ + EAL
Sbjct: 121 DEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALA 180
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+F++MR VG K E T+VS+L ACAHLGALD+G + Y+ D + + + T+L+DMYA
Sbjct: 181 LFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYA 240
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
KCG I A VF+ +E DVL WN +I G+A+HG VKE+ +LF EM+ + P++ITF
Sbjct: 241 KCGKISLATQVFNAME--SKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITF 298
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+ +LSAC+H G+V E + G+ PK EHY C++D L+RAG + EA E I MP
Sbjct: 299 VAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMP 358
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
+EP S LG+LL GC HG +L E+VGK+L+ LQP H GRY+ LSN+YA K+WD+AR
Sbjct: 359 MEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARK 418
Query: 421 TREAMETRGVKKYPGWSFVE 440
R M+ G+ K PG S +E
Sbjct: 419 VRNLMKVNGISKVPGVSVIE 438
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 131/275 (47%), Gaps = 33/275 (12%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S GN++ + + S + + WN+++ Y++ PN++++LF +M GV P
Sbjct: 135 LSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTE 194
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T L A L + + +H I E + + +L+ MY CG I A +VF+
Sbjct: 195 ATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNA 254
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M +K ++WN+++ G A I G+V KEA +F
Sbjct: 255 MESKDVLAWNTIIAGMA--------------------------IHGHV-----KEAQQLF 283
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAK 242
+EM++ + N++T V++L AC+H G +D+G+ +L M G+ + +ID+ A+
Sbjct: 284 KEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLAR 343
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
G ++EA+ + G + + A++GG +HG
Sbjct: 344 AGLLEEAMELI-GTMPMEPNPSALGALLGGCRIHG 377
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 343 bits (881), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 176/468 (37%), Positives = 269/468 (57%), Gaps = 34/468 (7%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHL 64
A+S + Y+ ++L P F +NT++RGYS+S P+ S+++FV+M+R G V PD
Sbjct: 48 AISISDALPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSF 107
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG------------ 112
++ F+ KA +H Q K G ES LF+ +LI MYG CG
Sbjct: 108 SFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEM 167
Query: 113 -------------------DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFE 153
D+ ARE+FD M + SWN ML GY K GE+ A+++F
Sbjct: 168 HQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFS 227
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
MP R+ VSWS +I G G + E+ + F E++ G NEV+L VL AC+ G+ +
Sbjct: 228 EMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEF 287
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
G+++ ++ G S + + +LIDMY++CG + A +VF G+++ + ++ W +MI GL
Sbjct: 288 GKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRC-IVSWTSMIAGL 346
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PK 332
AMHG +E++ LF EM G+TPD I+F+ LL AC+H GL+ E +F + + + P+
Sbjct: 347 AMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPE 406
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV 392
EHY CMVD R+G++ +AY+FICQMP+ PTA + +LL C +HG ++LAE V ++L
Sbjct: 407 IEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLN 466
Query: 393 ELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
EL P++ G V LSN YA +W + + R++M + +KK WS VE
Sbjct: 467 ELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVE 514
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 185/471 (39%), Positives = 275/471 (58%), Gaps = 34/471 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L A + N D++ KV S + NP +F WN VI+G ++ K+I + +M+
Sbjct: 71 LLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV-IDAR 129
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ TYP L KA + +H + K G SD+ I ++ IHMY S G + AR++
Sbjct: 130 PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKM 189
Query: 121 F--------------DG----------------MPTKMSVSWNSMLDGYAKCGEMNMARQ 150
F DG MP K SWN M++G AK G + AR+
Sbjct: 190 FYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARK 249
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F+ M ER+ +SWS+++DGY+ G YKEAL IF++M+ ++ L SVL AC+++GA
Sbjct: 250 LFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGA 309
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
+DQGR + Y+ + L L T+L+DMYAKCG + VF E + ++ WNAMI
Sbjct: 310 IDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFE--EMKEREIFTWNAMI 367
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGM 329
GGLA+HG +++LELF+++Q + P+ IT +G+L+ACAH G V + F+++ + G+
Sbjct: 368 GGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGV 427
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P+ EHY CMVD L R+G +EA + I MP++P A++ G+LL C HG DLAE VGK
Sbjct: 428 DPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGK 487
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L+EL+P + GRYV LSN+YA R+D+ R+ M+ RG+K PG S V+
Sbjct: 488 ILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVD 538
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/427 (40%), Positives = 257/427 (60%), Gaps = 3/427 (0%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S ++ + Y+ + L + +WNT +R +++ +P +ISLF ++ +SPDH
Sbjct: 55 SVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHY 114
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T F+ KA RL VH + K G +S++F+ N ++H+Y CG+I AR+VFD M
Sbjct: 115 TCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKM 174
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
P + ++WN M+ K G+ A ++F MPERNV SW+++I GY +CG KEA+ +F
Sbjct: 175 PQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFL 234
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
EM D G NEVT+V+VL ACA +G L GR + + G + + +LIDMY KCG
Sbjct: 235 EMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCG 294
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+++A +F +E + V+ W+AMI GLA HG +++L LF +M G+ P+ +TF+G+
Sbjct: 295 CLEDACRIFDNME--ERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGI 352
Query: 305 LSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L AC+H G+V + +F S+ + G+VP+ EHY CMVD SRAG + EA+EFI MP+ P
Sbjct: 353 LHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAP 412
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ G+LL GC H + LAE + L +L P +DG YV LSN+YA RW++ R+
Sbjct: 413 NGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRK 472
Query: 424 AMETRGV 430
M RG
Sbjct: 473 LMRDRGT 479
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 174/469 (37%), Positives = 279/469 (59%), Gaps = 35/469 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
SALS +DY+ + + P +F +N +I+G+ +S P +++ L+V+MLRA VSP
Sbjct: 22 SALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSY 81
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T+P L KA G +++ A AVH + + G++S +F+ SL+ Y S G I + VFD M
Sbjct: 82 TFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEM 141
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD--------- 175
P + +W +M+ G + G+M+ A ++F++MP+RN+ +W+ LIDGY + +
Sbjct: 142 PERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFN 201
Query: 176 ----------------------YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
++EAL +F EM G +EVT+ +V+ ACAHLGALD
Sbjct: 202 QMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDL 261
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
G+ + Y++ G +L + + ++LIDMYAKCG++ +L++F + + ++ WN++I GL
Sbjct: 262 GKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLR--EKNLFCWNSVIEGL 319
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS 333
A+HG+ +E+L +F +M+ I P+ +TF+ +LSAC H GL+ E F S+ + +P
Sbjct: 320 AVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPG 379
Query: 334 -EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV 392
EHY CMVD LS+AG + EA + I M LEP A + G+LL+GC H L++A++ KL+
Sbjct: 380 VEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLM 439
Query: 393 ELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV-KKYPGWSFVE 440
L+P + G Y L N+ A RW EA R M+ +GV K+ PG S++E
Sbjct: 440 VLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIE 488
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 17/258 (6%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
N + + M+ A + M NV ++A+I G+V+ +AL ++ +M
Sbjct: 18 NQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVS 77
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
T S++ AC + L + ++ G + +QTSL+D Y+ G I+E++ V
Sbjct: 78 PTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRV 137
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE--ITFLGLLSACAH 310
F E + DV W M+ GL G + + LF M PD T+ L+ A
Sbjct: 138 FD--EMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMM------PDRNLATWNTLIDGYAR 189
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTASM 367
V A F + R ++ + M++ S+ + EA +M + P
Sbjct: 190 LREVDVAELLFNQMPARDII----SWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVT 245
Query: 368 LGSLLTGCMNHGKLDLAE 385
+ ++++ C + G LDL +
Sbjct: 246 MATVISACAHLGALDLGK 263
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/437 (38%), Positives = 266/437 (60%), Gaps = 11/437 (2%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP-------DHLT 65
+ ++ +V + + +P + N +I+ Y+++ +++++++MLR SP D T
Sbjct: 62 VTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFT 121
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
YPFL KA G A EL VH + ++G +S + NSLI MY GD+ A +VFD M
Sbjct: 122 YPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMR 181
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ VSWN ++ +A+ G+M A +F MP++ +V+W+A++ GY GDY A+ F
Sbjct: 182 ERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRS 241
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M+ G + ++V++V+VL ACA LG L+ GR + Y G+ + + +L++MYAKCG
Sbjct: 242 MQTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGC 301
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGL 304
I +AL +F G+ DV+ W+ +IGGLA HG E++ LFTEM+ G + P+ ITF+GL
Sbjct: 302 IDQALQLFDGMA--DKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGL 359
Query: 305 LSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LSAC++ GLV E F + G+ P EHY C+VD L R+GQ+ A + + MP+
Sbjct: 360 LSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPA 419
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
A + GSLL+ C +HG +D A + ++LVEL+PD G V L+NVYA +RW + +TR+
Sbjct: 420 DAKVWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRK 479
Query: 424 AMETRGVKKYPGWSFVE 440
A+ +R ++K PG S +E
Sbjct: 480 AIRSRSMRKTPGCSLIE 496
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 134/305 (43%), Gaps = 36/305 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SA + LG + + + + + + I W ++ GY+ + ++ F M G PD
Sbjct: 192 ISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDD 251
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
++ + A +L EL ++A + G + I N+L+ MY CG I A ++FDG
Sbjct: 252 VSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDG 311
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M K +SW++++ G A G + EA+ +F
Sbjct: 312 MADKDVISWSTVIGGLAAHGRAH-------------------------------EAVWLF 340
Query: 184 EEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYA 241
EM G + N +T V +L AC++ G +D+G M D G+ + ++D+
Sbjct: 341 TEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLG 400
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
+ G I+ AL + + +D +W +++ HG V + + ++V + PD++
Sbjct: 401 RSGQIRRALDLVRDMPV-PADAKVWGSLLSACRSHGDVDTA--VLAAERLVELEPDDVGN 457
Query: 302 LGLLS 306
L +L+
Sbjct: 458 LVMLA 462
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 179/440 (40%), Positives = 265/440 (60%), Gaps = 34/440 (7%)
Query: 2 LSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP 61
L F+ +S + Y+ V + + NP +F WNT+IRGY++S NP+ + + +M+ + V P
Sbjct: 57 LIFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEP 116
Query: 62 DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121
D TYPFL KA + A+H+ + G+ES +F+ NSL+H+
Sbjct: 117 DTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHI-------------- 162
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
YA CG+ A +VFELM ER++V+W+++I+G+ G EAL
Sbjct: 163 -----------------YAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALT 205
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+F EM G + + T+VS+L A A LGAL+ GR + Y++ GLS + SL+D+YA
Sbjct: 206 LFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYA 265
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
KCGAI+EA VF E + + + W ++I GLA++GF +E+LELF EM+ G+ P EITF
Sbjct: 266 KCGAIREAQRVFS--EMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITF 323
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+G+L AC+H G++ E + +F+ + + G++P+ EHY CMVD LSRAG V +AYE+I MP
Sbjct: 324 VGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMP 383
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
++P A + +LL C HG L L EI L+ L+P H G YV LSN+YA +RW + +
Sbjct: 384 VQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQV 443
Query: 421 TREAMETRGVKKYPGWSFVE 440
R +M GVKK PG+S VE
Sbjct: 444 IRRSMLKDGVKKTPGYSLVE 463
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 175/419 (41%), Positives = 253/419 (60%), Gaps = 4/419 (0%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82
P F WN +IRG S S P++S+ L+ +ML + T+PFL KA L+ +
Sbjct: 70 FDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQET 129
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+HA I K GY D++ NSLI+ Y G+ +A +FD + +VSWNS++ GY K
Sbjct: 130 TQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKA 189
Query: 143 GEMNMARQVFELMPERN-VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
GEM+MA +F MPE+N +SW+ +I GYV+ G KEAL +F EM++ + V+L S
Sbjct: 190 GEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASA 249
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
L AC+ LGAL+QG+ + Y + L LIDMYAKCG ++EAL VF ++
Sbjct: 250 LSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMK--TK 307
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
V +W A+I G A HG +E++ F EMQ +G+ P+ ITF +L+AC++ GLV E F
Sbjct: 308 SVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVF 367
Query: 322 KSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
++ + + P EHY CMVD L RAG + EA FI +MPL+P A + GSLL C H
Sbjct: 368 NTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKN 427
Query: 381 LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
++L E +G+ L+E+ +H GRYV ++N++A+ K+WD+A TR M +GV K PG S +
Sbjct: 428 IELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAI 486
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 130/316 (41%), Gaps = 14/316 (4%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV-FDGMPTKMSVSWNSMLDGYAKCG 143
+HA++ K+G D + + S YA +V F+G + WN M+ G +
Sbjct: 30 IHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDTFLWNLMIRGLSCSD 89
Query: 144 EMNMARQVFELM----PERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLV 199
+ + + ++ M N ++ L+ ++E I + G + +
Sbjct: 90 QPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYAVN 149
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
S++ + A G ++ D+ S+I Y K G + AL +F + +
Sbjct: 150 SLINSYAVTGNFKHAHLLF----DRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPE- 204
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
+++ + W MI G G KE+L+LF EMQ + PD ++ LSAC+ G + + +
Sbjct: 205 KNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKW 264
Query: 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
K S ++D ++ G++ EA M + + + +L++G HG
Sbjct: 265 IHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTK-SVQVWTALISGYAYHG 323
Query: 380 KLDLAEIVGKKLVELQ 395
L K +E+Q
Sbjct: 324 ---LGREAISKFLEMQ 336
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 184/471 (39%), Positives = 274/471 (58%), Gaps = 34/471 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L A + N D++ KV S + NP +F WN VI+G ++ K+I + +M+
Sbjct: 71 LLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV-IDAR 129
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ TYP L KA + +H + K G SD+ I ++ I MY S G + AR++
Sbjct: 130 PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKM 189
Query: 121 F--------------DG----------------MPTKMSVSWNSMLDGYAKCGEMNMARQ 150
F DG MP K SWN M++G AK G + AR+
Sbjct: 190 FYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARK 249
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F+ M ER+ +SWS+++DGY+ G YKEAL IF++M+ ++ L SVL AC+++GA
Sbjct: 250 LFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGA 309
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
+DQGR + Y+ + L L T+L+DMYAKCG + VF E + ++ WNAMI
Sbjct: 310 IDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFE--EMKEREIFTWNAMI 367
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGM 329
GGLA+HG +++LELF+++Q + P+ IT +G+L+ACAH G V + F+++ + G+
Sbjct: 368 GGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGV 427
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P+ EHY CMVD L R+G +EA + I MP++P A++ G+LL C HG DLAE VGK
Sbjct: 428 DPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGK 487
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L+EL+P + GRYV LSN+YA R+D+ R+ M+ RG+K PG S V+
Sbjct: 488 ILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVD 538
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 176/438 (40%), Positives = 267/438 (60%), Gaps = 5/438 (1%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG--VSPDH 63
AL+ N+ YS +VL + NP +F +N++IR +SKS P++S + ++L + ++PD+
Sbjct: 52 ALNNPNNLHYSNQVLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDN 111
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T+ FL + S +L +VH K G+E D + + LI+MY G + VF
Sbjct: 112 YTFTFLVRTSAQLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSS 171
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+ V +M+ AK G++ AR++F+ M ++ ++W+A+I GYV+CG +EAL +F
Sbjct: 172 ICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLF 231
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
M+ G K NEV++VSVL AC+HLGALDQGR Y+ L +TL L T+LIDMYAKC
Sbjct: 232 NLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKC 291
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G + +A+ VF G++ + +V W++ IGGLAM+G ++ LELF+ M+ + P+EITF+
Sbjct: 292 GNMNKAMEVFWGMK--EKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVS 349
Query: 304 LLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+L C+ GLV E F+S+ K G+ P+ EHY CMVD RAG + EA FI MP+
Sbjct: 350 VLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVR 409
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P G+LL C + +++ E+ +K+VEL+ + G YV LSN+YA K WD R
Sbjct: 410 PHVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVR 469
Query: 423 EAMETRGVKKYPGWSFVE 440
+ M +GV+K PG S +E
Sbjct: 470 QTMNVKGVRKQPGCSVIE 487
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 32/247 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
SA + +G++ ++ K+ +S+ WN +I GY + +++SLF M R GV + +
Sbjct: 185 SACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEV 244
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
+ + A L + HA I + L + +LI MY CG++ A EVF GM
Sbjct: 245 SMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGM 304
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
K +W+S + G A G ++F LM + +V
Sbjct: 305 KEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSV------------------------ 340
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKC 243
+ NE+T VSVL C+ +G +++GR M G+ L ++D+Y +
Sbjct: 341 -------QPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRA 393
Query: 244 GAIKEAL 250
G + EAL
Sbjct: 394 GHLDEAL 400
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 181/445 (40%), Positives = 279/445 (62%), Gaps = 10/445 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGY-SKSKNPNKSISLFVKMLRAGV 59
+ +F +LS G+I+Y+ K+ + L NP F +NT+ + + S S+ P+ S+ + ML+ V
Sbjct: 40 IFTFCSLSKHGDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCV 99
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
+P+ T+P L +A E A +HA + K G+ D + N+LIH+Y + G + AR
Sbjct: 100 TPNAFTFPSLIRAC---KLEEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARR 156
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP-ERNVVSWSALIDGYVKCGDYKE 178
VF M VSW S++ GY++ G ++ A +VFELMP ++N VSW+A+I +VK ++E
Sbjct: 157 VFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFRE 216
Query: 179 ALVIFEEMR-DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
A +F MR + + + ++L AC +GAL+QG + +Y+ G+ L L T++I
Sbjct: 217 AFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTII 276
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITP 296
DMY KCG + +A VF G++ + V WN MIGG AMHG ++++ LF EM+ + P
Sbjct: 277 DMYCKCGCLDKAFHVFCGLKVKR--VSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAP 334
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
D ITF+ +L+ACAH GLV E WY+F+ + G+ P EHY CMVD L+RAG++ EA +
Sbjct: 335 DSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKV 394
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
I +MP+ P A++LG+LL C HG L+L E VG +++EL P++ GRYV L N+YA +W
Sbjct: 395 IDEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKW 454
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
++ R+ M+ RGVKK PG+S +E
Sbjct: 455 EQVAGVRKLMDDRGVKKEPGFSMIE 479
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 174/445 (39%), Positives = 272/445 (61%), Gaps = 17/445 (3%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
L N Y+ V + +S+P WNT I+GYS++ + + ++SLF++M R+ PD TYP L
Sbjct: 118 LSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSL 177
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA ++ + VA H + G D+F+ SLI +YG CG+I+ AR+VFD M +
Sbjct: 178 IKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNV 237
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--- 186
VSW +M+ GYA ++ AR++F+ MPE+N VSW+A+I GYVKCGD + A +F+EM
Sbjct: 238 VSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHR 297
Query: 187 -RDV---------GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP-LQTS 235
RDV K +E +VS++ AC+ +G+L+ + + Y+ + + + +
Sbjct: 298 NRDVVAWSALISGNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAA 357
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
LIDM AKCG++ A +F + K D++ + +M+ GL++HG +++ LF+ M G+T
Sbjct: 358 LIDMNAKCGSMDRATKLFEEMPKR--DLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLT 415
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYE 354
PD++ F +L+AC+ GLV E Y+F+S+ +VP +HYACMVD L RAG++ EAYE
Sbjct: 416 PDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYE 475
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414
+ MP+EP A G+LL C H ++L E+V +L EL+P + G YV LSN+YA ++
Sbjct: 476 LLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQ 535
Query: 415 WDEARTTREAMETRGVKKYPGWSFV 439
W + R M RG++K PG S++
Sbjct: 536 WLDVSLLRNKMRERGIRKIPGCSWI 560
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 87/392 (22%), Positives = 160/392 (40%), Gaps = 79/392 (20%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
IF T IR Y+ P+ ++ LR+ + ++ L KA + E VHA
Sbjct: 45 IFLPMTFIRRYTALTFPD-----YLPTLRSFDTTSSIST--LLKACTTTSTLE---QVHA 94
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
+I + G D FI + + + S + Y VF+G+ + +V WN+ + GY++ +++
Sbjct: 95 RIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSL 154
Query: 148 ARQVF------ELMPER---------------------------------NVVSWSALID 168
+F + +P++ +V ++LID
Sbjct: 155 TVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLID 214
Query: 169 GYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL 228
Y KCG+ A +F+EM + N V+ +++ A L + R + M +K
Sbjct: 215 LYGKCGEILCARKVFDEM----GERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAV- 269
Query: 229 TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288
++I Y KCG ++ A +F + DV+ W+A+I G
Sbjct: 270 ---SWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISG---------------- 310
Query: 289 MQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM-VPKSEHYACMVDALSRAG 347
+ PDE + L+SAC+ G + A + + K + V ++ A ++D ++ G
Sbjct: 311 ----NVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCG 366
Query: 348 QVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+ A + +MP S S++ G HG
Sbjct: 367 SMDRATKLFEEMPKRDLISYC-SMMQGLSIHG 397
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 189/478 (39%), Positives = 279/478 (58%), Gaps = 40/478 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-- 58
+L SA++ G I ++ V + P F +NT+IRG + + P ++SL+ +MLR G
Sbjct: 46 LLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGG 105
Query: 59 --VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSC----- 111
V PD LT+PF+ +A + + V VHA + K G ESD F+ N+LI M+ SC
Sbjct: 106 GGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGI 165
Query: 112 --------------------------GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
GDI AR++FD P K VSWN M+ YAK G+M
Sbjct: 166 AAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDM 225
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
+AR++F+ +PER+VVSW+ +I GYV+CG + AL +FE+M+ +G K + VT++S+L AC
Sbjct: 226 ALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSAC 285
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLP--LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
A G LD G+ + + D P L +LIDMYAKCG++K A VF + DV
Sbjct: 286 ADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMR--DKDV 343
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
WN+++GGLA+HG V ES+++F +M + PDEITF+ +L AC+HGG+V + FF
Sbjct: 344 STWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNL 403
Query: 324 LGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ + V P +HY CMVD L RAG + EA+EFI M EP + + +LL+ C HG+++
Sbjct: 404 MQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIE 463
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
LA+ ++L++ + D G YV LSN+YA W + R+ M+ GV K G +FV+
Sbjct: 464 LAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNKEAGQTFVD 521
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 173/435 (39%), Positives = 268/435 (61%), Gaps = 3/435 (0%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
L +G + + K+ + + + W+ +I GY ++ +++ +F++M G+ D +
Sbjct: 248 LGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVV 307
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A L+ + +H + + G ES + + N+LIHMY G+I+ A+++F+G
Sbjct: 308 VSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHN 367
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+SWNSM+ G KCG + AR +F++MPE+++VSWSA+I GY + + E L +F EM
Sbjct: 368 LDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEM 427
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ + +E LVSV+ AC HL ALDQG+ + Y+ GL + + L T+L+DMY KCG +
Sbjct: 428 QLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCV 487
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ AL VF+G+E + V WNA+I GLA++G V+ SL++F+EM+ G+ P+EITF+G+L
Sbjct: 488 ENALEVFNGME--EKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLG 545
Query: 307 ACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC H GLV E F S+ K G+ P +HY CMVD L RAG + EA + I MP+ P
Sbjct: 546 ACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDV 605
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
+ G+LL C HG ++ E VG+KL+ELQPDHDG +V LSN++A W++ R M
Sbjct: 606 ATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMM 665
Query: 426 ETRGVKKYPGWSFVE 440
+ +GV K PG S +E
Sbjct: 666 KQQGVVKTPGCSLIE 680
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 142/439 (32%), Positives = 219/439 (49%), Gaps = 61/439 (13%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L FS S +DYS ++ + N F WNT++R Y +S + K++ L+ M++ V
Sbjct: 79 LLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVG 138
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+ TYP + +A +H + K G++SD+++ N+LI+MY CG++ AR++
Sbjct: 139 PDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKL 198
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNV-------------------- 160
FD P SVSWNS+L GY K G++ A+ +F+ MP+RN+
Sbjct: 199 FDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAW 258
Query: 161 -----------VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
VSWSALI GY + G Y+EALV+F EM G + +EV +VSVL ACAHL
Sbjct: 259 KLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLS 318
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG-------------- 255
+ G+M+ +I G+ + LQ +LI MY+ G I +A +F+G
Sbjct: 319 IVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMIS 378
Query: 256 -------VEKHQS--------DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
VEK ++ D++ W+A+I G A H E+L LF EMQ+ I PDE
Sbjct: 379 GCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETI 438
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+ ++SAC H + + + + K G+ ++D + G V A E M
Sbjct: 439 LVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGME 498
Query: 361 LEPTASMLGSLLTGCMNHG 379
E S +L+ G +G
Sbjct: 499 -EKGVSSWNALIIGLAVNG 516
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 167/432 (38%), Positives = 266/432 (61%), Gaps = 4/432 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D +CKV + + + WN++I G+ + +P+K++ LF KM V H+T +
Sbjct: 180 GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 239
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A ++ E V + I + +L ++N+++ MY CG I A+ +FD M K +V
Sbjct: 240 SACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNV 299
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DV 189
+W +MLDGYA + AR+V MP++++V+W+ALI Y + G EAL++F E++
Sbjct: 300 TWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQK 359
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
K N++TLVS L ACA +GAL+ GR + Y+ G+ + + ++LI MY+KCG ++++
Sbjct: 360 NMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKS 419
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF+ VEK DV +W+AMIGGLAMHG E++++F +MQ + P+ +TF + AC+
Sbjct: 420 REVFNSVEKR--DVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACS 477
Query: 310 HGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV EA F + G+VP+ +HYAC+VD L R+G + +A +FI MP+ P+ S+
Sbjct: 478 HTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVW 537
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C H L+LAE+ +L+EL+P +DG +V LSN+YA +W+ R+ M
Sbjct: 538 GALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVT 597
Query: 429 GVKKYPGWSFVE 440
G+KK PG S +E
Sbjct: 598 GLKKEPGCSSIE 609
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 199/414 (48%), Gaps = 66/414 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGV 59
+ + +ALS +++Y+ KV + P F WNT+IR Y+ +P SI F+ M+ +
Sbjct: 68 LFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQC 127
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T+PFL KA+ ++ L ++H K+ SD+F++NSLIH Y SCGD+ A +
Sbjct: 128 YPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACK 187
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VF + K VSWNSM++G +V+ G +A
Sbjct: 188 VFTTIKEKDVVSWNSMING-------------------------------FVQKGSPDKA 216
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F++M KA+ VT+V VL ACA + L+ GR + Y+ + +++ L L +++DM
Sbjct: 217 LELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDM 276
Query: 240 YAKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAMI 270
Y KCG+I++A +F +E+ Q D++ WNA+I
Sbjct: 277 YTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALI 336
Query: 271 GGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
+G E+L +F E+Q+ + ++IT + LSACA G + + + K G+
Sbjct: 337 SAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGI 396
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT---ASMLGSL-LTGCMNHG 379
+ ++ S+ G + ++ E + ++M+G L + GC N
Sbjct: 397 RMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEA 450
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 7/191 (3%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+++ S +V + + +F W+ +I G + N+++ +F KM A V P+ +T+
Sbjct: 411 SKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFT 470
Query: 68 FLAKASGRLAKRELAVAVHAQI-AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A + A ++ Q+ + G + ++ + G G + A + + MP
Sbjct: 471 NVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPI 530
Query: 127 KMSVS-WNSMLDGYAKCGEMNMAR----QVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
S S W ++L +N+A ++ EL P RN + L + Y K G ++
Sbjct: 531 PPSTSVWGALLGACKIHANLNLAEMACTRLLELEP-RNDGAHVLLSNIYAKLGKWENVSE 589
Query: 182 IFEEMRDVGSK 192
+ + MR G K
Sbjct: 590 LRKHMRVTGLK 600
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 171/437 (39%), Positives = 268/437 (61%), Gaps = 10/437 (2%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-------VSPDHL 64
++ Y+ + + P + +N +IR ++ +K +I + +MLR + PD
Sbjct: 61 DLGYASLLFKQVKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRF 120
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T+PF+ K+ L L VHA + K G +S++ + N+LI MY C ++ A +VFDGM
Sbjct: 121 TFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGM 180
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ ++SWNS++ G+ G+M A +F+LMP R +VSW+A+I GY + G Y +AL +F
Sbjct: 181 VERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFR 240
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+M+ VG + +E++++SVL ACA LGAL+ G+ + Y GL + +L++MY+KCG
Sbjct: 241 QMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCG 300
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
I +A +F + K DV+ W+ MIGGLA HG +E++ELF M+ I P+ ITFLGL
Sbjct: 301 CIGQAYQLFDQMSK--GDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGL 358
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LSACAH G E +F S+ K + P+ EHY C+VD L RAG++++A + I +MP++P
Sbjct: 359 LSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKP 418
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ + GSLL+ C H LD+A I + L EL+PD G YV LSN+YA +WD R+
Sbjct: 419 DSKIWGSLLSSCRTHSNLDIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRK 478
Query: 424 AMETRGVKKYPGWSFVE 440
++++ +KK PG S ++
Sbjct: 479 LIKSKSMKKTPGSSLID 495
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/437 (39%), Positives = 265/437 (60%), Gaps = 3/437 (0%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
+L + +I Y+ K+ + P +F +N +I+ YS ++ SL+ +M G SP+ +
Sbjct: 25 SLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHS 84
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ FL A L+ + +H K+G+ D+F +L+ MY G + AR+ FD M
Sbjct: 85 FTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMT 144
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ +WNSM+ GYA+CG++ A ++F LMP RNV SW+A+I GY + G Y +AL +F
Sbjct: 145 VRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLM 204
Query: 186 M-RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M + + NEVTL SVL ACA+LGAL+ G + Y G L + +L++MYA+CG
Sbjct: 205 MEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCG 264
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
I +A VF ++ + ++ WN+MI GLA+HG E++ELF +M G PD++TF+G+
Sbjct: 265 RIDKAWGVFEEIDGRR-NLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGV 323
Query: 305 LSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L AC HGG+V+E +FF+S+ + + PK EHY CMVD L RAG++ EA++ I +MP+EP
Sbjct: 324 LLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEP 383
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ + G+LL C HG ++LAE L EL+P + G YV LSN+YA RWD R+
Sbjct: 384 DSVVWGTLLGACSFHGHVELAEKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRK 443
Query: 424 AMETRGVKKYPGWSFVE 440
M+ + K G+SF+E
Sbjct: 444 LMKGGKITKAAGYSFIE 460
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 170/432 (39%), Positives = 266/432 (61%), Gaps = 4/432 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D +CKV + + + WN++I G+ + +P+K++ LF KM V H+T +
Sbjct: 182 GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 241
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A ++ E V + I + +L ++N+++ MY CG I A+ +FD M K +V
Sbjct: 242 SACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNV 301
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DV 189
+W +MLDGYA + AR+V MP++++V+W+ALI Y + G EAL++F E++
Sbjct: 302 TWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQK 361
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
K N++TLVS L ACA +GAL+ GR + Y+ G+ + + ++LI MY+KCG +++A
Sbjct: 362 NIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKA 421
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF+ VEK DV +W+AMIGGLAMHG E++++F +MQ + P+ +TF + AC+
Sbjct: 422 REVFNSVEKR--DVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACS 479
Query: 310 HGGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV EA F+K G+VP+ +HYAC+VD L R+G + +A +FI MP+ P+ S+
Sbjct: 480 HTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVW 539
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C H L LAE+ +L+EL+P +DG +V LSN+YA +WD R+ M
Sbjct: 540 GALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVT 599
Query: 429 GVKKYPGWSFVE 440
G+KK PG S +E
Sbjct: 600 GLKKEPGCSSIE 611
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/386 (28%), Positives = 192/386 (49%), Gaps = 63/386 (16%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML--RAG 58
+ + +ALS +++Y+ KV + P F WNT+IR Y+ +P SI F+ M+ +
Sbjct: 69 LFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQ 128
Query: 59 VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
P+ T+PFL KA+ ++ L ++H K+ SD+F++NSLIH Y S
Sbjct: 129 CYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFS-------- 180
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
CG+++ A +VF + E++VVSW+++I+G+V+ G +
Sbjct: 181 -----------------------CGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDK 217
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
AL +F++M KA+ VT+V VL ACA + L+ GR + Y+ + +++ L L +++D
Sbjct: 218 ALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLD 277
Query: 239 MYAKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAM 269
MY KCG+I++A +F +E+ + D++ WNA+
Sbjct: 278 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNAL 337
Query: 270 IGGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328
I +G E+L +F E+Q+ I ++IT + LSACA G + + + K G
Sbjct: 338 ISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNG 397
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYE 354
+ + ++ S+ G + +A E
Sbjct: 398 IKMNFYVTSALIHMYSKCGDLEKARE 423
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 178/432 (41%), Positives = 262/432 (60%), Gaps = 4/432 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + +V ++ + WN++I + + P +++ LF +M V P+ +T +
Sbjct: 185 GELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVL 244
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + + E VH+ I + L +SN+++ MY CG + A+ +FD MP K V
Sbjct: 245 SACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIV 304
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DV 189
SW +ML GYAK GE + A+ +F+ MP +++ +W+ALI Y +CG KEAL +F E++
Sbjct: 305 SWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSK 364
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+K +EVTLVS L ACA LGA+D G + Y+ +G+ L L TSLIDMY KCG +++A
Sbjct: 365 TAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKA 424
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
L+VFH VE+ DV +W+AMI GLAMHG K+++ LF++MQ + P+ +TF +L AC+
Sbjct: 425 LMVFHSVER--KDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACS 482
Query: 310 HGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E FF + G++P +HYACMVD L RAG + EA E I +MP+ P AS+
Sbjct: 483 HVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVW 542
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C H + LAE +L+EL+P + G YV LSN+YA +WD R+ M
Sbjct: 543 GALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDV 602
Query: 429 GVKKYPGWSFVE 440
G+KK PG S +E
Sbjct: 603 GLKKEPGCSSIE 614
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/383 (29%), Positives = 181/383 (47%), Gaps = 62/383 (16%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++ +ALS ++DY+ +V + +P ++ WNT+IR Y+ S NP++S+ +F++ML
Sbjct: 73 LITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPD 132
Query: 61 -PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
PD T+PFL KA+ L + A H + K SD+FI NSLIH Y CG++
Sbjct: 133 FPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYR 192
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VF +P + VSWNSM+ + + G PE EA
Sbjct: 193 VFVNIPRRDVVSWNSMITAFVQGG-----------CPE--------------------EA 221
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F+EM K N +T+V VL ACA + GR + Y+ + +L L +++DM
Sbjct: 222 LELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDM 281
Query: 240 YAKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAMI 270
Y KCG++++A +F + + D+ WNA+I
Sbjct: 282 YTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALI 341
Query: 271 GGLAMHGFVKESLELFTEMQIVGIT-PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
G KE+LELF E+Q+ PDE+T + LSACA G + + + K+GM
Sbjct: 342 SAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGM 401
Query: 330 VPKSEHYACMVDALSRAGQVTEA 352
++D + G + +A
Sbjct: 402 KLNCHLTTSLIDMYCKCGDLQKA 424
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 179/445 (40%), Positives = 276/445 (62%), Gaps = 10/445 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGV 59
+L+F A S G+I+Y+ V + + +P +F WNT+IRG+S+S P+ +ISLF+ ML + V
Sbjct: 62 VLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSV 121
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P LTYP + KA +L +H ++ K G + D FI N++I+MY +CG + E
Sbjct: 122 QPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCG---FLSE 178
Query: 120 VFDGMPTKMS---VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
++ +M V+WNSM+ G AKCGE++ +R++F+ MP RN VSW+++I GYV+ G
Sbjct: 179 MWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRL 238
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
+EAL +F +M++ K +E T+VS+L A A LGAL QG + Y+ L + + S+
Sbjct: 239 REALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASI 298
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
IDMY KCG+I EA VF + WN MI GLAM+G E+++LF+ ++ + P
Sbjct: 299 IDMYCKCGSIGEAFQVFEMAP--LKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRP 356
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEF 355
D++TF+G+L+AC + GLV +A +F + K + P +HY+CMVD L RAG + EA E
Sbjct: 357 DDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEEL 416
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
I MP+ P A + SLL+ C HG ++LA+ K +V+L + YV LSN+YA ++
Sbjct: 417 IRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQF 476
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
+EA R +M+ + ++K PG S +E
Sbjct: 477 EEAMEQRLSMKEKQIEKEPGCSLIE 501
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/427 (41%), Positives = 262/427 (61%), Gaps = 5/427 (1%)
Query: 16 SCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGR 75
+CK+ + + W+ +I + +++ ++I FV M + GV D + A
Sbjct: 194 ACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACAN 253
Query: 76 LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSM 135
L + +H+ K G ES + + N+LI+MY CGDI+ AR++FD +SWNSM
Sbjct: 254 LLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSM 313
Query: 136 LDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE 195
+ GY KC ++ A+ +F+ MPE++VVSWS++I GY + + E L +F+EM+ G K +E
Sbjct: 314 ISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDE 373
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
TLVSV+ ACA L AL+QG+ + Y+ GL++ + L T+LIDMY KCG ++ AL VF+G
Sbjct: 374 TTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYG 433
Query: 256 -VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
+EK S WNA+I GLAM+G V+ SL++F+ M+ +TP+EITF+G+L AC H GLV
Sbjct: 434 MIEKGIS---TWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLV 490
Query: 315 MEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
E +F+ + + P +HY CMVD L RAG++ EA E + +MP+ P + G+LL
Sbjct: 491 DEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLG 550
Query: 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
C HG ++ VG+KL+ELQPDHDG +V LSN+YA +WD+ R M V K
Sbjct: 551 ACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKI 610
Query: 434 PGWSFVE 440
PG S +E
Sbjct: 611 PGCSMIE 617
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/439 (27%), Positives = 201/439 (45%), Gaps = 61/439 (13%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ FS +IDY+ ++ + + N F WN +IR Y ++ +P+ + +L+ ML +
Sbjct: 16 LIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLG 75
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
D+ TYP L +A A VH + K G++SD+++ N+LI+ + C ++ A V
Sbjct: 76 ADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRV 135
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNV-------------------- 160
F+ SVSWNS+L GY + G + A+ ++ MPER++
Sbjct: 136 FNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEAC 195
Query: 161 -----------VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
V+WSALI + + Y+EA+ F M +G +EV VS L ACA+L
Sbjct: 196 KLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLL 255
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV------------- 256
++ G+++ + G + LQ +LI MY+KCG I A +F
Sbjct: 256 VVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMIS 315
Query: 257 ----------------EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
+ DV+ W++MI G A + E+L LF EMQ+ G PDE T
Sbjct: 316 GYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETT 375
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+ ++SACA + + + + + G+ ++D + G V A E M
Sbjct: 376 LVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM- 434
Query: 361 LEPTASMLGSLLTGCMNHG 379
+E S +L+ G +G
Sbjct: 435 IEKGISTWNALILGLAMNG 453
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 172/429 (40%), Positives = 260/429 (60%), Gaps = 3/429 (0%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+D + KV + WN ++ GY++ K KS LF++M + GVSP+ +T + A
Sbjct: 158 VDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSA 217
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+L E ++ I E +L + N LI M+ +CG++ A+ VFD M + +SW
Sbjct: 218 CSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISW 277
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
S++ G+A G++++AR+ F+ +PER+ VSW+A+IDGY++ + EAL +F EM+ K
Sbjct: 278 TSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVK 337
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+E T+VS+L ACAHLGAL+ G + Y+ + + +LIDMY KCG + +A V
Sbjct: 338 PDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKV 397
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F E H D W AMI GLA++G +E+L +F+ M ITPDEIT++G+L AC H G
Sbjct: 398 FK--EMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAG 455
Query: 313 LVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
+V + FF S+ + G+ P HY CMVD L RAG++ EA+E I MP++P + + GSL
Sbjct: 456 MVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSL 515
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
L C H + LAE+ K+++EL+P++ YV L N+YA KRW+ R R+ M RG+K
Sbjct: 516 LGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIK 575
Query: 432 KYPGWSFVE 440
K PG S +E
Sbjct: 576 KTPGCSLME 584
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/439 (27%), Positives = 200/439 (45%), Gaps = 70/439 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++F G + Y+ +V + P +F WNT+I+GYS+ +P +S+++ ML + +
Sbjct: 45 VIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIK 104
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD T+PFL K R + + K G++S+LF+ + IHM+ C + AR+V
Sbjct: 105 PDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKV 164
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD V+WN ML GY N +Q +K++
Sbjct: 165 FDMGDAWEVVTWNIMLSGY------NRVKQ-------------------------FKKSK 193
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
++F EM G N VTLV +L AC+ L L+ G+ + +Y+ + L L+ LIDM+
Sbjct: 194 MLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMF 253
Query: 241 AKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAMIG 271
A CG + EA VF ++ + D + W AMI
Sbjct: 254 AACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMID 313
Query: 272 G-LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
G L M+ F+ E+L LF EMQ+ + PDE T + +L+ACAH G + + + K +
Sbjct: 314 GYLRMNRFI-EALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIK 372
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQM----PLEPTASMLGSLLTGCMNHGKLDLAEI 386
+ ++D + G V +A + +M TA ++G + G HG+ LA
Sbjct: 373 NDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAING---HGEEALAMF 429
Query: 387 VGKKLVELQPDHDGRYVGL 405
+ PD + Y+G+
Sbjct: 430 SNMIEASITPD-EITYIGV 447
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 183/462 (39%), Positives = 263/462 (56%), Gaps = 35/462 (7%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
NIDY+ V ++ P + W T+IRG+ ++KNP K++ + M + GV + T+ F+ K
Sbjct: 75 NIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLK 134
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A G + VH ++ K G+ D+F N+LIHMY CG I A +FD MP V+
Sbjct: 135 AYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVT 194
Query: 132 WNSMLDG-------------------------------YAKCGEMNMARQVFELMPERNV 160
WN+M+ G Y+K G +++AR +F+LMPER+V
Sbjct: 195 WNTMITGCFGCGDTERARRLFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDV 254
Query: 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY 220
VSW ++I YV+ G EAL +F+EM G A+ + + S+L ACA +GALD GR + Y
Sbjct: 255 VSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAY 314
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
M L + L T+L+DMYAKCG I A VF+ + + ++ WNAM+ GLA+HG
Sbjct: 315 MKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPR--KNLCSWNAMLSGLAIHGHGF 372
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACM 339
+LELF +M+ G+ P++ITF+ +LSAC+H G V E W F + K + PK EHY CM
Sbjct: 373 AALELFKQMESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCM 432
Query: 340 VDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399
VD L R G + EA E I MPLEP + G+LL C HG ++ E V + +L +
Sbjct: 433 VDILCRQGLINEAKEMIRTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVSEDG 492
Query: 400 GRYVGLSNVYAIFKRWDEARTTREAMETRGV-KKYPGWSFVE 440
G YV LSN++A +W+E TR+ M+ GV KK PG+S +E
Sbjct: 493 GCYVLLSNIFAAKSQWNEVEKTRKMMKQMGVEKKIPGYSSIE 534
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 133/275 (48%), Gaps = 35/275 (12%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S LG++D + + + + W ++I Y ++ +++ LF +M+ AGVS D +
Sbjct: 234 SKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIIT 293
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A ++ ++ +HA + ++ +D+F+ +L+ MY CG I A VF+ MP K
Sbjct: 294 SILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRK 353
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
SWN+ML G A G G+ AL +F++M
Sbjct: 354 NLCSWNAMLSGLAIHGH------------------------GFA-------ALELFKQME 382
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT--SLIDMYAKCGA 245
G N++T V+VL AC+H+G++++G M DK ++T ++ ++D+ + G
Sbjct: 383 STGVGPNDITFVAVLSACSHIGSVEEGWKKFNQM-DKEFNITPKVEHYGCMVDILCRQGL 441
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
I EA + + + +V+IW A++ +HG+
Sbjct: 442 INEAKEMIRTMPL-EPNVVIWGALLNACKVHGYTN 475
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 145/337 (43%), Gaps = 55/337 (16%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYG-SCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
+HAQ+ TG D FI+ + Y S +I YA VF G+ S SW +M+ G+ +
Sbjct: 46 IHAQLIITGQIKDTFIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFVEAK 105
Query: 144 EMNMARQVFELMPER---------------------------------------NVVSWS 164
A + + LM +R +V + +
Sbjct: 106 NPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRN 165
Query: 165 ALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK 224
ALI Y+KCG +A ++F+EM + N VT +++ C G ++ R + M ++
Sbjct: 166 ALIHMYLKCGSITDAHLLFDEMPN----HNVVTWNTMITGCFGCGDTERARRLFGEMPER 221
Query: 225 GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLE 284
+ +++ Y+K G + A +F + + DV+ W +MI +G E+LE
Sbjct: 222 NVG----SWNAVVGGYSKLGHVDIARSLFDLMP--ERDVVSWGSMISAYVQNGRAAEALE 275
Query: 285 LFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHY-ACMVDA 342
LF EM + G++ D I +LSACA G L M W + KR + +VD
Sbjct: 276 LFKEMMLAGVSADSIIITSILSACAQIGALDMGRW--IHAYMKRSKLRNDVFLDTALVDM 333
Query: 343 LSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
++ G + A+ MP + S ++L+G HG
Sbjct: 334 YAKCGCIDTAFGVFNTMPRKNLCS-WNAMLSGLAIHG 369
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 177/427 (41%), Positives = 262/427 (61%), Gaps = 5/427 (1%)
Query: 16 SCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGR 75
+CK+ + + W+ +I + +++ ++I FV M + GV D + A
Sbjct: 329 ACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACAN 388
Query: 76 LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSM 135
L + +H+ K G ES + + N+LI+MY CGDI+ AR++FD +SWNSM
Sbjct: 389 LLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSM 448
Query: 136 LDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE 195
+ GY KC ++ A+ +F+ MPE++VVSWS++I GY + + E L +F+EM+ G K +E
Sbjct: 449 ISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDE 508
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
TLVSV+ ACA L AL+QG+ + Y+ GL++ + L T+LIDMY KCG ++ AL VF+G
Sbjct: 509 TTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYG 568
Query: 256 -VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
+EK S WNA+I GLAM+G V+ SL++F+ M+ +TP+EITF+G+L AC H GLV
Sbjct: 569 MIEKGIS---TWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLV 625
Query: 315 MEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
E + F S+ + P +HY CMVD L RAG++ EA E + +MP+ P + G+LL
Sbjct: 626 DEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLG 685
Query: 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
C HG ++ VG+KL+ELQPDHDG +V LSN+YA +WD+ R M V K
Sbjct: 686 ACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKI 745
Query: 434 PGWSFVE 440
PG S +E
Sbjct: 746 PGCSMIE 752
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 182/404 (45%), Gaps = 61/404 (15%)
Query: 36 RGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYE 95
R Y ++ +P+ + +L+ ML + D+ TYP L +A A VH + K G++
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245
Query: 96 SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELM 155
SD+++ N+LI+ + C ++ A VF+ SVSWNS+L GY + G + A+ ++ M
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305
Query: 156 PERNV-------------------------------VSWSALIDGYVKCGDYKEALVIFE 184
PER++ V+WSALI + + Y+EA+ F
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFV 365
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M +G +EV VS L ACA+L ++ G+++ + G + LQ +LI MY+KCG
Sbjct: 366 GMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCG 425
Query: 245 AIKEALIVFHGV-----------------------------EKHQSDVLIWNAMIGGLAM 275
I A +F + DV+ W++MI G A
Sbjct: 426 DIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQ 485
Query: 276 HGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEH 335
+ E+L LF EMQ+ G PDE T + ++SACA + + + + + G+
Sbjct: 486 NDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVIL 545
Query: 336 YACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
++D + G V A E M +E S +L+ G +G
Sbjct: 546 GTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNALILGLAMNG 588
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 266/473 (56%), Gaps = 35/473 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L A++ ++ Y+ ++ + NP +F +NT+IRG S S P+ ++ LFV+M R V+
Sbjct: 43 LLLHCAVTLPDSLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVA 102
Query: 61 -PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
PD ++ FL KA+ + +H G +S LF+ +LI MY C +V+AR+
Sbjct: 103 LPDSFSFAFLLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARK 162
Query: 120 VFDGM-------------------------------PTKMSVSWNSMLDGYAKCGEMNMA 148
VFD M P + SWN ML GY K GE+ +A
Sbjct: 163 VFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLA 222
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
R+VF MP ++ VSWS +I G+ G++ +A F E+R G + NEV+L VL ACA
Sbjct: 223 REVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQA 282
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
GA + GR++ ++ G + + +LID Y+KCG + A +VF + + + + W A
Sbjct: 283 GAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSA--VSWTA 340
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV-MEAWYFFKSLGKR 327
MI G+AMHG+ +E++ LF EM+ I PD ITF+ +L AC+H GLV + YF + +
Sbjct: 341 MIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTY 400
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
G+ P EHY CMVD RAG++ +AY+F+CQMP+ P + +LL C HG L LA V
Sbjct: 401 GIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQV 460
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++L EL P++ G +V LSN+YA+ +W + R +M + +KK PGWS +E
Sbjct: 461 KRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIE 513
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 165/412 (40%), Positives = 257/412 (62%), Gaps = 4/412 (0%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGR-LAKRELAVAVHAQI 89
WN +I G+++ + ++ FV M RAG +P +TY + A G+ L + VH ++
Sbjct: 112 WNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRV 171
Query: 90 AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
+G DL + N+L+ MY C D+ A ++FDGM + VSW S+L G + G ++ AR
Sbjct: 172 VGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEAR 231
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
+F MPER+ VSW+A+IDGYV+ ++EAL +F EM+ A+E T+VSV+ ACA LG
Sbjct: 232 DLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLG 291
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
AL+ G + YM +G+ + + +LIDMY+KCG+I+ AL VF + H D W A+
Sbjct: 292 ALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFK--DMHHRDKFTWTAI 349
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-G 328
I GLA++G+ +E++E+F M V TPDE+TF+G+L+AC H GLV + FF S+ +
Sbjct: 350 ILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYN 409
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
+ P HY C++D RAG++TEA + I QMP+ P +++ G+LL C HG ++ E+V
Sbjct: 410 IAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVT 469
Query: 389 KKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++L+++ P++ Y LSN+YA RW++ R R + +G+KK PG S +E
Sbjct: 470 ERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIE 521
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 134/304 (44%), Gaps = 35/304 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L+ LG +D + + + W +I GY ++ +++ +F +M + VS D
Sbjct: 218 LSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADE 277
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + A +L E+ V +++ G + D F+ N+LI MY CG I A +VF
Sbjct: 278 FTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKD 337
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + +W +++ G A ++GY +EA+ +F
Sbjct: 338 MHHRDKFTWTAIILGLA--------------------------VNGY-----GEEAIEMF 366
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAK 242
M V +EVT + VL AC H G +D+GR M + ++ + +ID++ +
Sbjct: 367 HRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGR 426
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
G I EAL + + IW ++ +HG E EL TE +++ + P+ T
Sbjct: 427 AGKITEALDAIDQMPMTPNST-IWGTLLAACRVHGN-SEIGELVTE-RLLQMDPENSTVY 483
Query: 303 GLLS 306
LLS
Sbjct: 484 TLLS 487
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 142/344 (41%), Gaps = 63/344 (18%)
Query: 47 SISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIH 106
+++ + +ML G PD T+P L KA R + AVHA + K G + ++ SL+
Sbjct: 27 AVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVT 86
Query: 107 MYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSAL 166
Y + GD AR + V WN+++ G+ +C
Sbjct: 87 AYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRR---------------------- 124
Query: 167 IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH-LGALDQGRMMLRYMIDKG 225
+ EA F +M G+ VT VSVL AC G + G + ++ G
Sbjct: 125 ---------FGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSG 175
Query: 226 LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH-------------------------- 259
+ L ++ +L+DMYA+C ++ A +F G++
Sbjct: 176 VLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFG 235
Query: 260 ---QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVM 315
+ D + W AMI G +E+LE+F EMQ ++ DE T + +++ACA G L M
Sbjct: 236 RMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEM 295
Query: 316 EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
W + ++G+ + ++D S+ G + A + M
Sbjct: 296 GEWVRVY-MSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDM 338
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 88/203 (43%), Gaps = 31/203 (15%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+I+ + V + + F W +I G + + ++I +F +M+ +PD +T+
Sbjct: 323 SKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFI 382
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNS------------LIHMYGSCGDIV 115
+ L HA + G E L + + +I ++G G I
Sbjct: 383 GV-----------LTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKIT 431
Query: 116 YAREVFDGMP-TKMSVSWNSML-----DGYAKCGEMNMARQVFELMPERNVVSWSALIDG 169
A + D MP T S W ++L G ++ GE+ + ++ ++ PE + V ++ L +
Sbjct: 432 EALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGEL-VTERLLQMDPENSTV-YTLLSNI 489
Query: 170 YVKCGDYKEALVIFEEMRDVGSK 192
Y KC +++ + + + G K
Sbjct: 490 YAKCNRWEDVRRLRHTIMEKGIK 512
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 180/473 (38%), Positives = 266/473 (56%), Gaps = 39/473 (8%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S+ S +I++S V +H +F +N +IRG + + + +I F MLR+G+ PD L
Sbjct: 121 SSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRL 180
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMY---------------- 108
TYPF+ K+ L EL +A+H I + G E D F+ SL+ MY
Sbjct: 181 TYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDES 240
Query: 109 ------------------GSC--GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
G C G + A ++F MP K +VSW++++DG+AK G+M+ A
Sbjct: 241 PERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRA 300
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
++F+ MPE+NVVSW+ ++DG+ + GD ++AL +F +M + G + N T+VS L ACA +
Sbjct: 301 MELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKI 360
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
G L+ G + +Y+ D GL LT L T+L+DMYAKCG I+ A VF E Q + W
Sbjct: 361 GGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFG--ETEQKSIRTWTV 418
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328
MI G A+HG ++++ F +M GI PDE+ FL LL+AC H G V FF S+
Sbjct: 419 MIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDY 478
Query: 329 MV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ P +HY +VD L R+GQ+ EA FI +MP+ P + G+L C H K +A+
Sbjct: 479 CIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFA 538
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
KL++L+P H G Y+ LSN YA +W++A R M+ RGV K GWS +E
Sbjct: 539 LNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIE 591
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 180/422 (42%), Positives = 255/422 (60%), Gaps = 11/422 (2%)
Query: 29 FYWNTVIRGYSKSKNP---NKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAV 85
F WN +IR + +P + IS++ +M VSPD T+PFL + L
Sbjct: 24 FVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRT 83
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
HAQI G + D F+ SL++MY SCGD+ A +FD +K +WNS+++ YAK G +
Sbjct: 84 HAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLI 143
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-----DVGSKANEVTLVS 200
N AR++F+ MPERNV+SWS LI+GYV CG YKEAL +F EM+ +V N+ T+ +
Sbjct: 144 NHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMST 203
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
VL AC LGAL+QG+ + Y+ G+ + + L T+LIDMYAKCG+++ A VF + +
Sbjct: 204 VLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGS-K 262
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACAHGGLVMEAWY 319
DV ++AMI LAM+G E ++F+EM I P+ +TF+G+L AC H GL+ +
Sbjct: 263 KDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKS 322
Query: 320 FFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNH 378
+FK + + G+ P +HY CMVD R+G + EA FI MP+EP + GSLL+G
Sbjct: 323 YFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRML 382
Query: 379 GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSF 438
G + E K+L+EL P + G YV LSNVYA RW E + R ME +G+KK PG S+
Sbjct: 383 GDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSY 442
Query: 439 VE 440
VE
Sbjct: 443 VE 444
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 128/283 (45%), Gaps = 38/283 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-----RAGV 59
+A + G I+++ K+ + + W+ +I GY +++ LF +M V
Sbjct: 135 NAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFV 194
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
SP+ T + A GRL E VH+ I K G E D+ + +LI MY CG + A+
Sbjct: 195 SPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKR 254
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD + +K ++V ++SA+I G E
Sbjct: 255 VFDALGSK------------------------------KDVKAYSAMICCLAMYGLTDEC 284
Query: 180 LVIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLI 237
+F EM + N VT V +L AC H G +++G+ + M ++ G++ ++ ++
Sbjct: 285 FQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMV 344
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
D+Y + G IKEA F + DVLIW +++ G M G +K
Sbjct: 345 DLYGRSGLIKEAE-SFIASMPMEPDVLIWGSLLSGSRMLGDIK 386
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 169/432 (39%), Positives = 268/432 (62%), Gaps = 7/432 (1%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSK--NPNKSISLFVKMLRAGVSPDHLTYPFLA 70
+ Y+ K+ + P F +NT+I+G+ S+ N + L+ ML+ V P++ T+P L
Sbjct: 73 LTYALKLFDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLL 132
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A ++ + + +HA + K G+ + NSLIHMY + + AR VF +P SV
Sbjct: 133 IACRKI---QHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSV 189
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW S++ GY+K G ++ A +F+LMP++N SW+A++ YV+ + EA +F+ M+
Sbjct: 190 SWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAEN 249
Query: 191 SKA-NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ ++ ++L AC LGALDQG+ + Y+ G+ L L T+++DMY KCG +++A
Sbjct: 250 NNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKA 309
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
L VFH + + WN MIGGLAMHG + +++LF EM+ + PD+ITFL LL+ACA
Sbjct: 310 LQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACA 369
Query: 310 HGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E +F + + G+ P+ EH+ CMVD L RAG V EA + I +MP+ P ++L
Sbjct: 370 HSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVL 429
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C H ++L E +G++++EL+P++ GRYV L+N+YA +W++A R+ M+ R
Sbjct: 430 GTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDR 489
Query: 429 GVKKYPGWSFVE 440
GVKK PG+S +E
Sbjct: 490 GVKKAPGFSMIE 501
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 123/299 (41%), Gaps = 42/299 (14%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP-DH 63
S S G ID + + + WN ++ Y ++ +++ +LF +M + D
Sbjct: 196 SGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDK 255
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+ A L + +H I + G E D ++ +++ MY CG + A +VF
Sbjct: 256 FVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHS 315
Query: 124 --MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
+P + SWN M+ G A G A Q+F+ M + V
Sbjct: 316 LPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVA-------------------- 355
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMY 240
+++T +++L ACAH G +++GR YMI G+ + ++D+
Sbjct: 356 -----------PDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLL 404
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM--QIVGITPD 297
+ G + EA + + DV + ++G H ++EL E+ +++ + P+
Sbjct: 405 GRAGMVPEARKLIDEMPV-SPDVTVLGTLLGACKKH----RNIELGEEIGRRVIELEPN 458
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 177/436 (40%), Positives = 266/436 (61%), Gaps = 3/436 (0%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSK-SKNPNKSISLFVKMLR-AGVSPDHLT 65
S G++ Y+ ++ + P +F +NT+I+ ++ + + S+ +F+ M+R +G P+ T
Sbjct: 60 SSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYT 119
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ F+ KA G + K G ES+LF++N++I MY + G + AR VFD
Sbjct: 120 FVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSL 179
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ SWN M+ GY GE+ A+++F+ M ER+VVSW+ +I GYV+ G +KEAL +F E
Sbjct: 180 DQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHE 239
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M G NE TL S L ACA+L ALDQGR + Y+ + + L SL+DMYAKCG
Sbjct: 240 MLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGE 299
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
I A VFH + V WNAMIGG AMHG KE+++LF +M++ ++P+++TF+ LL
Sbjct: 300 IDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALL 359
Query: 306 SACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
+AC+HG LV E +FKS+ G+ P+ EHY CMVD L R+G + EA E + MP+ P
Sbjct: 360 NACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPD 419
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
A++ G+LL C H ++ + +GK + EL DH G +V L+N+Y+ +WDEA+ R+
Sbjct: 420 ATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQK 479
Query: 425 METRGVKKYPGWSFVE 440
+E G KK PG S +E
Sbjct: 480 IEVSGRKKTPGCSSIE 495
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 189/454 (41%), Positives = 269/454 (59%), Gaps = 19/454 (4%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+LSF S GN+ + KV + NP WN +IRG+S+S+ P+K + L+ +M+ A
Sbjct: 56 LLSFYITS--GNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAE 113
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD---IVYA 117
P+ TY FL R VH ++ GY +++F+ SL+++Y G + A
Sbjct: 114 PNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKA 173
Query: 118 REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
R VFD + + VSWNS+L GY +CG+++ AR++F+ MPERNVVSW+ +I G + G K
Sbjct: 174 RRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCK 233
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL-----SLTLPL 232
+AL +F EMR G K ++V LV+ L ACA LG L G + Y ID+ L L + L
Sbjct: 234 QALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSY-IDERLHAGNQPLLVSL 292
Query: 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292
SLI MYA CG I +A VF G++ Q + W +MI G A G +E+L +F MQ +
Sbjct: 293 NNSLIHMYASCGVIDKAYKVFIGMQ--QRSTISWTSMITGFAKQGHAEEALGVFQWMQRL 350
Query: 293 GIT---PDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQ 348
G PD ITF+G+L AC+H G V + +FF+ + K+ G+VP+ EHY CMVD LSRAG
Sbjct: 351 GTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGF 410
Query: 349 VTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL-VELQPDHDGRY-VGLS 406
+ EA+ I MP++P ++ G+LL GC H +LA V +KL +EL+PD Y V LS
Sbjct: 411 LDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLALELKPDQAAGYLVLLS 470
Query: 407 NVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
NVYA KRW + R+ M GV+K G S+V+
Sbjct: 471 NVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQ 504
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 144/330 (43%), Gaps = 13/330 (3%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+H QI G+ F+ L+ Y + G+++ A +VF+ + + WN M+ G+++
Sbjct: 37 IHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSET 96
Query: 145 ----MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
+ + ++ E E N ++S LI G + +E + + G N S
Sbjct: 97 PHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTS 156
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
++ A G D G R + D+ + + SL+ Y +CG + A +F E +
Sbjct: 157 LVNLYAIAGGYD-GVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFD--EMPE 213
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAW- 318
+V+ W MI G A G K++L LF EM+ G+ D++ + LSACA G L + W
Sbjct: 214 RNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWI 273
Query: 319 --YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
Y + L ++ + G + +AY+ M T S S++TG
Sbjct: 274 HSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWT-SMITGFA 332
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLS 406
G + A V + + L D +GR G++
Sbjct: 333 KQGHAEEALGVFQWMQRLGTD-EGRPDGIT 361
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 189/442 (42%), Positives = 261/442 (59%), Gaps = 11/442 (2%)
Query: 8 SYLG--NIDYSCKVLSHL-SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG--VSPD 62
SY+G N+ ++ V S P WN +I+ YSK+ + +S+ LF +ML G S D
Sbjct: 96 SYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSAD 155
Query: 63 HLTYPFLAKASGRLAK-RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121
T+ F+ A R R VH + K GYESD+F+ NSL++MY +V A+ VF
Sbjct: 156 KYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVF 215
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
D MP + ++W S++ GYA GE+ AR++F++MP RN VSW+ ++ GYV Y EAL
Sbjct: 216 DEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQ 275
Query: 182 IFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
F +M K NE LVS+L ACAHLGALDQG+ + Y+ + L+ + T+LIDMY
Sbjct: 276 CFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMY 335
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG I A VF G+ H+ D+L W +MI GL+MHG E L F+EM G PD+IT
Sbjct: 336 AKCGRIDCARRVFDGL--HKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDIT 393
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
LG+L+ C+H GLV E F + G+VPK EHY C++D L RAG++ A+E I M
Sbjct: 394 LLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSM 453
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQP-DHDGRYVGLSNVYAIFKRWDEA 418
P+EP +LL+ C HG +DL E + + EL P H G YV LSN+YA +W+
Sbjct: 454 PMEPDVVAWRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESV 513
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R+AM RG + PG S++E
Sbjct: 514 TKVRKAMSQRGSEGCPGCSWIE 535
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 129/324 (39%), Gaps = 70/324 (21%)
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P H T+ L K L + + +HAQ+ G + + LIH Y C ++ +AR V
Sbjct: 53 PSHSTFVQLLKKRPSLTQIK---QIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIV 109
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD P+ L P + W+ +I Y K +E+L
Sbjct: 110 FDQFPS---------------------------LPP---TIIWNLMIQAYSKTPSSQESL 139
Query: 181 VIFEEMRDVG--SKANEVTLVSVLCACA-HLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
+F +M G + A++ T V AC+ H G + ++ G + + SL+
Sbjct: 140 YLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLV 199
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAM---------------------- 275
+MY+ + +A VF E Q DV+ W +++ G AM
Sbjct: 200 NMYSIFSRMVDAKRVFD--EMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSW 257
Query: 276 ---------HGFVKESLELFTEMQIVG-ITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
H F E+L+ F +M + P+E + +LSACAH G + + + +
Sbjct: 258 AVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYID 317
Query: 326 KRGMVPKSEHYACMVDALSRAGQV 349
K ++ S ++D ++ G++
Sbjct: 318 KNRILLSSNISTALIDMYAKCGRI 341
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 274/470 (58%), Gaps = 40/470 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-- 58
+L SA++ G I ++ V + P F +NT+IRG + + P ++SL+ +MLR G
Sbjct: 16 LLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGG 75
Query: 59 --VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSC----- 111
V PD LT+PF+ +A + + V VHA + K G ESD F+ N+LI M+ SC
Sbjct: 76 GGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGI 135
Query: 112 --------------------------GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
GDI AR++FD P K VSWN M+ YAK G+M
Sbjct: 136 AAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDM 195
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
+AR++F+ +PER+VVSW+ +I GYV+CG + AL +FE+M+ +G K + VT++S+L AC
Sbjct: 196 ALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSAC 255
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLP--LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
A G LD G+ + + D P L +LIDMYAKCG++K A VF + DV
Sbjct: 256 ADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMR--DKDV 313
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
WN+++GGLA+HG V ES+++F +M + PDEITF+ +L AC+HGG+V + FF
Sbjct: 314 STWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNL 373
Query: 324 LGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ + V P +HY CMVD L RAG + EA+EFI M EP + + +LL+ C HG+++
Sbjct: 374 MQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIE 433
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432
LA+ ++L++ + D G YV LSN+YA W + R+ M+ GV K
Sbjct: 434 LAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNK 483
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 182/471 (38%), Positives = 279/471 (59%), Gaps = 42/471 (8%)
Query: 1 MLSFSALS-YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
+L+ +ALS ++ ++ + H NP F +NT+I S++ + S++ +V ML AG
Sbjct: 49 LLACAALSPSASDLPHAKTIFLHTHNPSPFMFNTIIMASSRTLD---SVTFYVCMLHAGH 105
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGS--------- 110
PD+ T+PFL K+S L +HA + K G + D+F+ N++I +Y S
Sbjct: 106 FPDNFTFPFLIKSSSASPTSLLGHQLHAHVVKFGLDRDVFVVNNMIALYSSFRELRSARK 165
Query: 111 -----------------------CGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
G I AR++FD MP K +VSWN+M+ GYA +N
Sbjct: 166 VFDESYSLVDVVSWTTLITGFSNSGQIDEARKIFDLMPLKNTVSWNAMISGYAGSSRINE 225
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK--ANEVTLVSVLCAC 205
AR++F+ MP+R+ SWSA++ GY + G EAL +F EM G K NE LVS + AC
Sbjct: 226 ARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLFMEMV-TGDKMIPNEAALVSAVSAC 284
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
A L AL++GR + Y+ +K L + + L T L+DMY KCG+I +A VF+ + + +V
Sbjct: 285 AQLRALEEGRWLHSYIKEKKLRINVTLGTVLLDMYGKCGSILDAAGVFNLMS--ERNVNS 342
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
WN+MI GLA++G KE+L LF +MQ VG +P+ ITF+ LL+ C+H GL+ E + F +
Sbjct: 343 WNSMIAGLALNGCGKEALALFWKMQFVGPSPNAITFIALLTGCSHSGLITEGRWLFSMMT 402
Query: 326 K-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
+ G+ P+ +HY CMVD L RAG V EA +F+ +MP++P + + G+L+ C HG+++L
Sbjct: 403 QVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVEKMPMKPHSELWGALVGACRIHGQVELG 462
Query: 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPG 435
E +GK+L++L+P H GRY L N++A +RWD+ R+ + R V K PG
Sbjct: 463 EELGKRLIDLEPHHGGRYALLCNIFAAAQRWDDVAMVRDLEKGRKVLKNPG 513
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 174/473 (36%), Positives = 269/473 (56%), Gaps = 34/473 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L SA+S +DY+ ++ H NP +F NT+IRG ++S P S+ FV+M R +
Sbjct: 43 LLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTA 102
Query: 61 P-DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P D ++ FL KA+ E + +H Q G ++ LF+ +L+ MY CG + +A++
Sbjct: 103 PLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKK 162
Query: 120 VF-------------------------------DGMPTKMSVSWNSMLDGYAKCGEMNMA 148
VF + MP + SWN ML GY K GE+ +A
Sbjct: 163 VFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELA 222
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
R++F MP ++ VSWS +I G+ G + EA F E++ VG + NEV+L L ACA
Sbjct: 223 RKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADA 282
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
GA++ G+++ ++ G + + +L+D Y+KCG + A +VF + + +S ++ W +
Sbjct: 283 GAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRS-IVSWTS 341
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW-YFFKSLGKR 327
MI GLAMHG+ +E+++LF EM+ GI PD I F+ +L AC+H GL+ + + YF+K
Sbjct: 342 MIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIY 401
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ P EHY CMVD RAGQ+ +AYEFI MP+ PTA + +LL C HG + LAE V
Sbjct: 402 NIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERV 461
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++L EL P++ G +V LSN+YA+ +W + R +M + + K PGWS +E
Sbjct: 462 KERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIE 514
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 274/470 (58%), Gaps = 40/470 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-- 58
+L SA++ G I ++ V + P F +NT+IRG + + P ++SL+ +MLR G
Sbjct: 16 LLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGG 75
Query: 59 --VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSC----- 111
V PD LT+PF+ +A + + V VHA + K G ESD F+ N+LI M+ SC
Sbjct: 76 GGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGI 135
Query: 112 --------------------------GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
GDI AR++FD P K VSWN M+ YAK G+M
Sbjct: 136 AAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDM 195
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
+AR++F+ +PER+VVSW+ +I GYV+CG + AL +FE+M+ +G K + VT++S+L AC
Sbjct: 196 ALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSAC 255
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLP--LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
A G LD G+ + + D P L +LIDMYAKCG++K A VF + DV
Sbjct: 256 ADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMR--DKDV 313
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
WN+++GGLA+HG V ES+++F +M + PDEITF+ +L AC+HGG+V + FF
Sbjct: 314 STWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNL 373
Query: 324 LGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ + V P +HY CMVD L RAG + EA+EFI M EP + + +LL+ C HG+++
Sbjct: 374 MQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIE 433
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432
LA+ ++L++ + D G YV LSN+YA W + R+ M+ GV K
Sbjct: 434 LAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNK 483
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 175/446 (39%), Positives = 269/446 (60%), Gaps = 9/446 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
ML F+A+S G++ Y+ ++ + P F++NT+IRGY+KS +P+ ++LF +M + V
Sbjct: 54 MLRFAAVSPSGDLPYAQRLFDQMPQPNTFFYNTIIRGYAKSSSPSYCVNLFNQMRQNHVD 113
Query: 61 PDHLTYPFLAKASGRLAKRELAVA------VHAQIAKTGYESDLFISNSLIHMYGSCGDI 114
PD T+ FL KA R+ K + +H + K G+ S LF+ N+LI++Y G
Sbjct: 114 PDEFTFNFLIKARSRVHKVHNFPSTLECDEIHGAVFKYGFCSHLFVQNALINLYAVKGSP 173
Query: 115 VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
A VF+ VSW+ ++ + + GE+ +ARQVF+ MPE++VVSW+A++ GY K
Sbjct: 174 AAAWRVFNETVGVDVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKAN 233
Query: 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT 234
+EAL +F EM D G + +EVT+VSV+ AC +LG ++ G + Y+ + G + L
Sbjct: 234 CSREALELFWEMSDAGIRPDEVTIVSVISACTNLGDVETGMNVHSYINENGFGWMVSLCN 293
Query: 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
+LI+MYAKCG + A VF+ +++ ++ WN+MI A HG+ +++ ELF+ M GI
Sbjct: 294 ALINMYAKCGCVDRAWRVFNNMKR--KSLITWNSMISACANHGYAEDAFELFSCMLNSGI 351
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAY 353
PD ITFL LL A H GLV E + F+ + + G+ EHY C+VD L RAG++ EAY
Sbjct: 352 APDGITFLALLIAYTHKGLVDEGYRLFQIMERDYGIEASIEHYGCIVDMLGRAGRLEEAY 411
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413
E I MP+ + G+LL C +G +++ E V KKL+EL+PD G Y+ L ++Y
Sbjct: 412 ELIVTMPIPSNDIVWGALLAACRIYGDVNMGERVVKKLLELKPDEGGYYILLRDIYVASG 471
Query: 414 RWDEARTTREAMETRGVKKYPGWSFV 439
R EA R+AM+ G K PG+S+V
Sbjct: 472 RTAEANHIRQAMQESGAMKNPGYSWV 497
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 189/454 (41%), Positives = 268/454 (59%), Gaps = 19/454 (4%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+LSF S GN+ + KV + NP WN +IRG+S+S+ P+K + L+ +M+ A
Sbjct: 72 LLSFYITS--GNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAE 129
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD---IVYA 117
P+ TY FL R VH ++ GY +++F+ SL+++Y G + A
Sbjct: 130 PNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKA 189
Query: 118 REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
R VFD + + VSWNS+L GY +CG+++ AR++F+ MPERNVVSW+ +I G + G K
Sbjct: 190 RRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCK 249
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS-----LTLPL 232
+AL +F EMR G K ++V LV+ L ACA LG L G + Y ID+ L L + L
Sbjct: 250 QALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSY-IDERLHAGNQPLLVSL 308
Query: 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292
SLI MYA CG I +A VF G++ Q + W +MI G A G +E+L +F MQ +
Sbjct: 309 NNSLIHMYASCGVIDKAYKVFIGMQ--QRSTISWTSMITGFAKQGHAEEALGVFQWMQRL 366
Query: 293 GIT---PDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQ 348
G PD ITF+G+L AC+H G V + +FF+ + K+ G+VP+ EHY CMVD LSRAG
Sbjct: 367 GTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGF 426
Query: 349 VTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV-ELQPDHDGRY-VGLS 406
+ EA+ MP++P ++ G+LL GC H +LA V +KLV EL+PD Y V LS
Sbjct: 427 LDEAHRLXESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLVLELKPDQAAGYLVLLS 486
Query: 407 NVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
NVYA KRW + R+ M GV+K G S+V+
Sbjct: 487 NVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQ 520
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 144/330 (43%), Gaps = 13/330 (3%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+H QI G+ F+ L+ Y + G+++ A +VF+ + + WN M+ G+++
Sbjct: 53 IHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSET 112
Query: 145 ----MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
+ + ++ E E N ++S LI G + +E + + G N S
Sbjct: 113 PHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVRTS 172
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
++ A G D G R + D+ + + SL+ Y +CG + A +F E +
Sbjct: 173 LVNLYAIAGGYD-GVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFD--EMPE 229
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAW- 318
+V+ W MI G A G K++L LF EM+ G+ D++ + LSACA G L + W
Sbjct: 230 RNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWI 289
Query: 319 --YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
Y + L ++ + G + +AY+ M T S S++TG
Sbjct: 290 HSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWT-SMITGFA 348
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLS 406
G + A V + + L D +GR G++
Sbjct: 349 KQGHAEEALGVFQWMQRLGTD-EGRPDGIT 377
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 182/475 (38%), Positives = 275/475 (57%), Gaps = 37/475 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++SF A+ G++ Y+ ++ + P F +N++IRGYS S +P ++ LF +M+ +G+S
Sbjct: 26 LISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLS 85
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYES------------------------ 96
P+ T PF+ KA G + AV VH K G S
Sbjct: 86 PNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKL 145
Query: 97 ----------DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
D+ + N+L+ MY CG++ A+ +FD K VSW SM+ YA+ G +
Sbjct: 146 FDDITDKTLIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIE 205
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
+ARQ+F+ MP +NVVSW+++I Y++ G Y+EAL +F +MR+ +E TLVS+L AC+
Sbjct: 206 VARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACS 265
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
LG L G+ + Y++ + + L SLIDMYAKCG + AL +F +E +++ W
Sbjct: 266 QLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIF--LEMPGKNLVSW 323
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
N +IG LA+HG E+++LF EMQ G PDEIT GLLSAC+H GLV Y+F +G
Sbjct: 324 NVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGV 383
Query: 327 RGMVPKS-EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
VP+ EHYACMVD L R G + EA E I +MP++P + G+LL C HG +++ +
Sbjct: 384 IYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGK 443
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ K+L+EL+P G YV +SN+Y +RW++ + R+ M RG+KK S +E
Sbjct: 444 QILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIE 498
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 181/457 (39%), Positives = 278/457 (60%), Gaps = 19/457 (4%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGV 59
+L FSA+S ++DY+ K+ + P F +NT+IR S+S +P ++ +F++M+ V
Sbjct: 49 LLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSV 108
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI----- 114
P+ T+P + KA GR + VH K G +SD F+ ++++ MY SCG +
Sbjct: 109 EPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHR 168
Query: 115 VYAREVF----DGMPTKMS------VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWS 164
++ R VF DG+ K V WN M+DGY + GE+ +AR +F+ MP+R+VVSW+
Sbjct: 169 LFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWN 228
Query: 165 ALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK 224
+I GY + G +KEA+ +F EM+ N VTLVSVL A + LGAL+ G+ + Y +
Sbjct: 229 VMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRN 288
Query: 225 GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLE 284
+ + L ++LIDMYAKCG+I++AL VF G+ K +V+ W+ +I GLAMHG K++L+
Sbjct: 289 NIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKR--NVVTWSTIIAGLAMHGRAKDTLD 346
Query: 285 LFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDAL 343
F +M+ G+ P ++T++GLLSAC+H GLV E +FF + + G+ P+ EHY CMVD L
Sbjct: 347 HFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLL 406
Query: 344 SRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYV 403
RAG + E+ E I MP++P + +LL C HG +++ + V + L+EL P G YV
Sbjct: 407 GRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYV 466
Query: 404 GLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
LSN+YA W+ R M+ V+K PG S++E
Sbjct: 467 ALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIE 503
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 175/432 (40%), Positives = 269/432 (62%), Gaps = 5/432 (1%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML--RAGVSPDHLTYPFL 69
+++Y+ V + +++ F WNT+IRG+S+S P +IS+F+ ML V P LTYP +
Sbjct: 73 DMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSV 132
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA GRL + +H + K G E D FI N+++HMY +CG ++ A +F GM
Sbjct: 133 FKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDV 192
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
V+WNSM+ G+AKCG ++ A+ +F+ MP+RN VSW+++I G+V+ G +K+AL +F EM++
Sbjct: 193 VAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEK 252
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
K + T+VS+L ACA+LGA +QGR + Y++ L + T+LIDMY KCG I+E
Sbjct: 253 DVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEG 312
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
L VF K Q + WN+MI GLA +GF + +++LF+E++ G+ PD ++F+G+L+ACA
Sbjct: 313 LNVFECAPKKQ--LSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACA 370
Query: 310 HGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H G V A FF+ + ++ M+ P +HY MV+ L AG + EA I MP+E +
Sbjct: 371 HSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIW 430
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
SLL+ C G +++A+ K L +L PD YV LSN YA + ++EA R M+ R
Sbjct: 431 SSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKER 490
Query: 429 GVKKYPGWSFVE 440
++K G S +E
Sbjct: 491 QMEKEVGCSSIE 502
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 129/309 (41%), Gaps = 36/309 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ID + + + WN++I G+ ++ ++ +F +M V PD T L
Sbjct: 206 GLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLL 265
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L E +H I + +E + + +LI MY CG I VF+ P K
Sbjct: 266 NACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLS 325
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
WNSM+ G A G FE + A+ +F E+ G
Sbjct: 326 CWNSMILGLANNG--------FE-----------------------ERAMDLFSELERSG 354
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
+ + V+ + VL ACAH G + + R M +K + ++ T ++++ G ++EA
Sbjct: 355 LEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEA 414
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS-AC 308
+ + + D +IW++++ G V+ + ++ + PDE LLS A
Sbjct: 415 EALIKNMPVEE-DTVIWSSLLSACRKIGNVEMAKRAAKCLK--KLDPDETCGYVLLSNAY 471
Query: 309 AHGGLVMEA 317
A GL EA
Sbjct: 472 ASYGLFEEA 480
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 34/291 (11%)
Query: 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGSKANEVT 197
A +MN A VF + +N W+ +I G+ + + A+ IF +M K +T
Sbjct: 69 ASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLT 128
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV- 256
SV A LG GR + +I +GL ++ +++ MY CG + EA +F G+
Sbjct: 129 YPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMI 188
Query: 257 ----------------------------EKHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288
E Q + + WN+MI G +G K++L++F E
Sbjct: 189 GFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFRE 248
Query: 289 MQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQ 348
MQ + PD T + LL+ACA+ G + + + + + S ++D + G
Sbjct: 249 MQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGC 308
Query: 349 VTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPD 397
+ E P + S S++ G N+G + A + +L L+PD
Sbjct: 309 IEEGLNVFECAP-KKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPD 358
>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 573
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 180/422 (42%), Positives = 254/422 (60%), Gaps = 11/422 (2%)
Query: 29 FYWNTVIRGYS---KSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAV 85
F WN +IR S + IS++++M VSPD T+PFL + L
Sbjct: 25 FLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRT 84
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
HAQI G + D F+ SL++MY SCGD+ A+ VFD +K +WNS+++ YAK G +
Sbjct: 85 HAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLI 144
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-----DVGSKANEVTLVS 200
+ AR++F+ MPERNV+SWS LI+GYV CG YKEAL +F EM+ + + NE T+ +
Sbjct: 145 DDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMST 204
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
VL AC LGAL+QG+ + Y+ + + + L T+LIDMYAKCG+++ A VF+ + +
Sbjct: 205 VLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGS-K 263
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACAHGGLVMEAWY 319
DV ++AMI LAM+G E +LF+EM I P+ +TF+G+L AC H GL+ E
Sbjct: 264 KDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKS 323
Query: 320 FFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNH 378
+FK + + G+ P +HY CMVD R+G + EA FI MP+EP + GSLL+G
Sbjct: 324 YFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRML 383
Query: 379 GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSF 438
G + E K+L+EL P + G YV LSNVYA RW E + R ME +G+ K PG S+
Sbjct: 384 GDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSY 443
Query: 439 VE 440
VE
Sbjct: 444 VE 445
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 38/283 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-----RAGV 59
+A + G ID + K+ + + W+ +I GY +++ LF +M A V
Sbjct: 136 NAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFV 195
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T + A GRL E VHA I K E D+ + +LI MY CG + A+
Sbjct: 196 RPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKR 255
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VF+ + +K ++V ++SA+I G E
Sbjct: 256 VFNALGSK------------------------------KDVKAYSAMICCLAMYGLTDEC 285
Query: 180 LVIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLI 237
+F EM + N VT V +L AC H G +++G+ + MI++ G++ ++ ++
Sbjct: 286 FQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMV 345
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
D+Y + G IKEA F + DVLIW +++ G M G +K
Sbjct: 346 DLYGRSGLIKEAE-SFIASMPMEPDVLIWGSLLSGSRMLGDIK 387
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 172/431 (39%), Positives = 255/431 (59%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+++ + KV + WN +I GY K K+I ++ M GV PD +T L
Sbjct: 205 GDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLV 264
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ L + + + G + + N+L+ M+ CGDI AR +FD + + V
Sbjct: 265 SSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIV 324
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW +M+ GYA+CG ++++R++F+ M E++VV W+A+I G V+ ++AL +F+EM+
Sbjct: 325 SWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSN 384
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+K +E+T++ L AC+ LGALD G + RY+ LSL + L TSL+DMYAKCG I EAL
Sbjct: 385 TKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEAL 444
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VFHG++ S L + A+IGGLA+HG ++ F EM GI PDEITF+GLLSAC H
Sbjct: 445 SVFHGIQTRNS--LTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCH 502
Query: 311 GGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GG++ +F + R + P+ +HY+ MVD L RAG + EA + MP+E A++ G
Sbjct: 503 GGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWG 562
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL GC HG ++L E KKL+EL P G YV L +Y W++A+ R M RG
Sbjct: 563 ALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERG 622
Query: 430 VKKYPGWSFVE 440
V+K PG S +E
Sbjct: 623 VEKIPGCSSIE 633
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 189/384 (49%), Gaps = 63/384 (16%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV- 59
+++F ALS +DYS K+L + NP IF WN IRG+S+S+NP +S L+ +MLR G
Sbjct: 91 LIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCC 150
Query: 60 --SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYA 117
PDH TYP L K L L + + K E + N+ IHM+ SCGD+ A
Sbjct: 151 ESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENA 210
Query: 118 REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
R+VFD P + VSWN +++GY K GE A V++LM
Sbjct: 211 RKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESE------------------- 251
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
G K ++VT++ ++ +C+ LG L++G+ Y+ + GL +T+PL +L+
Sbjct: 252 ------------GVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALM 299
Query: 238 DMYAKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNA 268
DM++KCG I EA +F +EK + DV++WNA
Sbjct: 300 DMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNA 359
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328
MIGG +++L LF EMQ PDEIT + LSAC+ G + + + + K
Sbjct: 360 MIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYS 419
Query: 329 MVPKSEHYACMVDALSRAGQVTEA 352
+ +VD ++ G ++EA
Sbjct: 420 LSLNVALGTSLVDMYAKCGNISEA 443
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 123/278 (44%), Gaps = 33/278 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S + G +D S K+ + + WN +I G ++K +++LF +M + PD
Sbjct: 330 ISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDE 389
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T A +L ++ + +H I K ++ + SL+ MY CG+I A VF G
Sbjct: 390 ITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHG 449
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+ T+ S+ +++A+I G GD A+ F
Sbjct: 450 IQTRNSL-------------------------------TYTAIIGGLALHGDASTAISYF 478
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAK 242
EM D G +E+T + +L AC H G + GR M + L+ L + ++D+ +
Sbjct: 479 NEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGR 538
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G ++EA + + ++D +W A++ G MHG V+
Sbjct: 539 AGLLEEADRLMESMPM-EADAAVWGALLFGCRMHGNVE 575
>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 629
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 180/446 (40%), Positives = 269/446 (60%), Gaps = 11/446 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+F A S G+ Y+ + +H+ NP IF +N++I Y+ + +KS+S+F KML +
Sbjct: 62 ILAFFAASPRGDFRYAETLFTHMPNPNIFDYNSIITSYTTNSQFDKSLSVFTKMLNMNIR 121
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ T+ L K+ L+ E V K+G SD++ +S+I+++ G I AR+V
Sbjct: 122 PNSHTFTTLVKSCVTLSSLE---QVFTLTMKSGNSSDVYFVSSVINVFSKHGAIHLARQV 178
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD + V W S++ GY CG +N R VF+ MP+RN S SA++ GYV+ + E +
Sbjct: 179 FDESSNRNVVCWTSLVSGYCSCGLVNEVRDVFDKMPQRNEASNSAMVSGYVRNSFFSEGV 238
Query: 181 VIFEEMR--DVGS---KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
+F E++ D G K N LVSVL AC +GA ++G+ + Y+ + GL L L T+
Sbjct: 239 QLFRELKKKDKGRARVKFNGALLVSVLNACTVMGAFEEGKWIHSYVEENGLEYDLELGTA 298
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
LID YAKCG +K+A VF + DV W+AMI GLA++G K +LELF +M+ VG
Sbjct: 299 LIDFYAKCGWVKDAEKVFDKML--VKDVATWSAMILGLAINGNNKMALELFEKMEKVGPK 356
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYE 354
P+E+TF+G+L+AC H L E+ F + ++ + P EHY C+VD L+R+GQV +A
Sbjct: 357 PNEVTFVGVLTACNHKSLFGESSRLFGIMSEKYNITPSIEHYGCIVDILARSGQVKKALI 416
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414
FI M +EP ++ GSLL GC+ HG +L + VGK L+E P+H GRYV L+N+YA +
Sbjct: 417 FINSMHIEPDGAIWGSLLNGCLMHGHYELGQKVGKYLIEFDPEHSGRYVLLANMYANMGK 476
Query: 415 WDEARTTREAMETRGVKKYPGWSFVE 440
W+ R+ M+ RGV GWSF+E
Sbjct: 477 WEGVSEVRKLMKDRGVVIVYGWSFIE 502
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 185/470 (39%), Positives = 274/470 (58%), Gaps = 40/470 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-- 58
+L SA++ G I ++ V + P F +NT+IRG + + P ++SL+ +MLR G
Sbjct: 16 LLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGG 75
Query: 59 --VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSC----- 111
V PD LT+PF+ +A + + V VHA + K G ESD F+ N+LI M+ SC
Sbjct: 76 GGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGI 135
Query: 112 --------------------------GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
GDI AR++FD P K VSWN M+ YAK G+M
Sbjct: 136 AAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDM 195
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
+AR++F+ +PER+VVSW+ +I GYV+CG + AL +FE+M+ +G K + VT++S+L AC
Sbjct: 196 ALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSAC 255
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLP--LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
A G LD G+ + + D P L +LIDMYAKCG++K A VF + DV
Sbjct: 256 ADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMR--DKDV 313
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
WN+++GGLA+HG V ES+++F +M + PDEITF+ +L AC+HGG+V + FF
Sbjct: 314 STWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNL 373
Query: 324 LGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ + V P +HY C+VD L RAG + EA+EFI M EP + + +LL+ C HG+++
Sbjct: 374 MQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIE 433
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432
LA+ ++L++ + D G YV LSN+YA W + R+ M+ GV K
Sbjct: 434 LAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNK 483
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/437 (40%), Positives = 263/437 (60%), Gaps = 5/437 (1%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIR--GYSKSKNPNKSISLFVKMLRA-GVSPDHL 64
S I Y+ V H P +F +NT+I+ +S + + + S + F ++R + P+
Sbjct: 45 SIFAPISYAHMVFDHFPQPDLFLYNTIIKVLAFSTTSSAD-SFTKFRSLIREERLVPNQY 103
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
++ F K G V K G E++LF++N+LI MY + +V AR+VFD
Sbjct: 104 SFAFAFKGCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWS 163
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
P + SWN ML GYA+ G+M+ ARQ+F+ MPE++VVSW+ +I G ++ G + EAL IF
Sbjct: 164 PNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFH 223
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M G NE TL S L ACA+L ALDQGR M Y+ + + L LIDMYAKCG
Sbjct: 224 NMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCG 283
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
++ A +F+ + + V WNAMIGG A+HG KE++E+F +M+I ++P+++TF+ L
Sbjct: 284 ELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVAL 343
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L+AC+HG V E Y+F+S+ V P+ EHY C+VD L RAG++ EA E I M L P
Sbjct: 344 LNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTP 403
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
++ G+LL+ C H ++ E VGK + EL P+H G +V L+N+Y++ W+EART RE
Sbjct: 404 DVAIWGALLSACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLRE 463
Query: 424 AMETRGVKKYPGWSFVE 440
+ G KK PG S +E
Sbjct: 464 KIAESGKKKTPGCSSIE 480
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 118/276 (42%), Gaps = 35/276 (12%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S + LG +D + ++ + + W T+I G + +++ +F ML G+SP+
Sbjct: 175 LSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNE 234
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T A L + +H I K + + + LI MY CG++ +A ++F+
Sbjct: 235 YTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNS 294
Query: 124 MPT-KMSV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
P K V WN+M+ G+A G+ KEA+
Sbjct: 295 NPRLKRKVWPWNAMIGGFAVHGKS-------------------------------KEAIE 323
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMY 240
+FE+M+ N+VT V++L AC+H +++GR M + L L+D+
Sbjct: 324 VFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLL 383
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ G +KEA + + DV IW A++ +H
Sbjct: 384 GRAGRLKEAEEIISSMHL-TPDVAIWGALLSACKIH 418
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 178/445 (40%), Positives = 266/445 (59%), Gaps = 7/445 (1%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNP-RIFYWNTVIRGYSKSKNPNK---SISLFVKMLR 56
++SFSAL G+IDY+ +L S P +F +NT IRG+S+++ P S+ LFV+M
Sbjct: 26 IISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTTIRGFSRARRPGSLLSSVLLFVRMGV 85
Query: 57 AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
++P++ T+ FL + +L H + K +E D+F+ NS+I Y CG +
Sbjct: 86 LSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLND 145
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
AR VFD VSWNSM+DG + G + A +F M ERN +SW+ +I GY + G
Sbjct: 146 ARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQP 205
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
KEAL +F EM+ + + N LVSVL AC+ LGALD G + Y+ K + + L +L
Sbjct: 206 KEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAAL 265
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
IDMYAKCG+I A+ F K DV + A I GLAM+G +E+L+LF +M+ GI+P
Sbjct: 266 IDMYAKCGSIDLAMQAFSTSRKR--DVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISP 323
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEF 355
D ++++ +L AC+H G V + +++F S+ G+ P+ +HYACMVD L RAG + EA +F
Sbjct: 324 DGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKF 383
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
+ MP++P + G+LL C +G ++ + VG LVE +HDGRY+ LSN+YA +
Sbjct: 384 VASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKG 443
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
++A R+ M R V + PG S +E
Sbjct: 444 EDAEQVRKTMRRRKVDRVPGCSLIE 468
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 166/433 (38%), Positives = 260/433 (60%), Gaps = 4/433 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS-PDHLTYPF 68
LG++DY+ ++ + +SNP +F +N++IR Y+ + I ++ ++LR + PD T+PF
Sbjct: 55 LGDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPF 114
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+ K+ L L VH + K G + N+LI MY D+V A +VFD M +
Sbjct: 115 MFKSCASLGSCYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERD 174
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
+SWNS+L GYA+ G+M A+ +F LM ++ +VSW+A+I GY G Y EA+ F EM+
Sbjct: 175 VISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQL 234
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G + +E++L+SVL +CAHLG+L+ G+ + Y +GL + +LI+MY+KCG + +
Sbjct: 235 AGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQ 294
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A+ +F + DV+ W+ MI G A HG + E F EMQ + P+ ITFLGLLSAC
Sbjct: 295 AIQLFE--QTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSAC 352
Query: 309 AHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
+H GL + +F + + + PK EHY C++D L+RAG++ A E MP++P + +
Sbjct: 353 SHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKI 412
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
GSLL+ C G LD+A + LVE++PD G YV L+N+YA +W++ R+ +
Sbjct: 413 WGSLLSSCRTKGNLDVALVAMDHLVEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRK 472
Query: 428 RGVKKYPGWSFVE 440
+KK PG S +E
Sbjct: 473 ENMKKTPGCSLIE 485
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 136/294 (46%), Gaps = 40/294 (13%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE-MRDVGSKA 193
M+D K G+M+ A ++F + NV ++++I Y Y + + I+++ +R
Sbjct: 48 MVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFP 107
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+ T + +CA LG+ G+ + ++ G + + +LIDMY K + +A VF
Sbjct: 108 DRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVF 167
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVK-------------------------------ES 282
E + DV+ WN+++ G A G +K E+
Sbjct: 168 D--EMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEA 225
Query: 283 LELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
++ F EMQ+ GI PDEI+ + +L +CAH G L + W + +RG++ ++ +++
Sbjct: 226 MDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYA-ERRGLLKQTGVCNALIE 284
Query: 342 ALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ 395
S+ G +++A + Q + S ++++G HG A + +E+Q
Sbjct: 285 MYSKCGMLSQAIQLFEQTKGKDVIS-WSTMISGYAYHGN---AHRAFETFIEMQ 334
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 86/194 (44%), Gaps = 13/194 (6%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G + + ++ + W+T+I GY+ N +++ F++M RA V P+ +T+
Sbjct: 287 SKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFL 346
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISN--SLIHMYGSCGDIVYAREVFDGMP 125
L A + + + + + + Y+ + I + LI + G + A E+ MP
Sbjct: 347 GLLSACSHVGLWQQGLK-YFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMP 405
Query: 126 TKM-SVSWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
K S W S+L G +++A + E+ P+ ++ ++ L + Y G +++
Sbjct: 406 VKPDSKIWGSLLSSCRTKGNLDVALVAMDHLVEVEPD-DMGNYVLLANIYADLGKWEDV- 463
Query: 181 VIFEEMRDVGSKAN 194
+R + K N
Sbjct: 464 ---SRLRKIIRKEN 474
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 176/479 (36%), Positives = 273/479 (56%), Gaps = 51/479 (10%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
L N Y+ V + +S+P WNT I+GYS++ + + ++SLF++M R+ PD TYP L
Sbjct: 70 LSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSL 129
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG----------------- 112
KA ++ + VA H + G D+F+ SLI +YG CG
Sbjct: 130 IKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNV 189
Query: 113 --------------DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
D+V AR++FD MP K +VSWN+++ GY KCG++ AR++F+ MP R
Sbjct: 190 VSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHR 249
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEM--RDV--------------GSKANEVTLVSVL 202
NVVS++ +IDGY K GD A +FEE RDV K +E +VS++
Sbjct: 250 NVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLM 309
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLP-LQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
AC+ +G+L+ + + Y+ + + + +LIDM AKCG++ A +F + K
Sbjct: 310 SACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKR-- 367
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
D++ + +M+ GL++HG +++ LF+ M G+TPD++ F +L+AC+ GLV E Y+F
Sbjct: 368 DLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYF 427
Query: 322 KSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
+S+ +VP +HYACMVD L RAG++ EAYE + MP+EP A G+LL C H
Sbjct: 428 ESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCD 487
Query: 381 LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
++L E+V +L EL+P + G YV LSN+YA ++W + R M RG++K PG S++
Sbjct: 488 IELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 546
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/370 (21%), Positives = 151/370 (40%), Gaps = 62/370 (16%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VHA+I + G D F+ + + + S + Y VF+G+ + +V WN+ + GY++
Sbjct: 44 VHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYS 103
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
+++ +F M + V ++ T S++ A
Sbjct: 104 VSLTVSLFIRMKRSDAV-------------------------------PDKFTYPSLIKA 132
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
C+ + + +G + G+ + + TSLID+Y KCG I A VF E + +V+
Sbjct: 133 CSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFD--EMGERNVV 190
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
W AMI G A + E+ +LF EM + +++ ++S G + A F +
Sbjct: 191 SWTAMIAGYASFSDLVEARKLFDEMP----EKNAVSWNAIISGYVKCGDLRSARKMFDEM 246
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEA-------------------YEFICQMPLEPTA 365
R +V + M+D +++G + A + + ++P
Sbjct: 247 PHRNVV----SFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDE 302
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYV--GLSNVYAIFKRWDEARTTRE 423
++ SL++ C G L+LA+ V + + D +V L ++ A D A E
Sbjct: 303 FIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFE 362
Query: 424 AMETRGVKKY 433
M R + Y
Sbjct: 363 EMPKRDLISY 372
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 178/477 (37%), Positives = 272/477 (57%), Gaps = 43/477 (9%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG------ 58
SA+ G ++ V + +P F +NT+IRG + S P ++S++ +M R
Sbjct: 50 SAVGVRGGTAHARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLM 109
Query: 59 -VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD---- 113
+ PD T+PF+ +A + E VHA + K G ESD F+ N+LI M+ + GD
Sbjct: 110 TLRPDKRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAA 169
Query: 114 ---------------------------IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
I ARE+FD P K VSWN M+ YAK G+M
Sbjct: 170 AALFDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMA 229
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
AR++F+ P+R+VVSW+A+I GYV+CG K+A+ +FE+M+ +G K + VT++S+L ACA
Sbjct: 230 PARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACA 289
Query: 207 HLGALDQGRMMLRYMIDK--GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
G LD GR + ++ + + T L +LIDMYAKCG++ AL VF ++ +V
Sbjct: 290 DSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQ--DKNVS 347
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
WN++IGGLA+HG ES+ +F +M + PDEITF+ +L+AC+HGG+V + +F +
Sbjct: 348 TWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLM 407
Query: 325 GKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+R + P +HY CMVD LSR G + EA+EFI M +EP + +LL C HG+++L
Sbjct: 408 QQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIEL 467
Query: 384 AEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
AE ++L++ + D G +V LSN+YA W + R+ M+ GV K G + ++
Sbjct: 468 AEHANRELLKARSDASGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVID 524
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 178/477 (37%), Positives = 272/477 (57%), Gaps = 43/477 (9%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG------ 58
SA+ G ++ V + +P F +NT+IRG + S P ++S++ +M R
Sbjct: 50 SAVGVRGGTAHARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLM 109
Query: 59 -VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD---- 113
+ PD T+PF+ +A + E VHA + K G ESD F+ N+LI M+ + GD
Sbjct: 110 TLRPDKRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAA 169
Query: 114 ---------------------------IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
I ARE+FD P K VSWN M+ YAK G+M
Sbjct: 170 AALFDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMA 229
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
AR++F+ P+R+VVSW+A+I GYV+CG K+A+ +FE+M+ +G K + VT++S+L ACA
Sbjct: 230 PARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACA 289
Query: 207 HLGALDQGRMMLRYMIDK--GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
G LD GR + ++ + + T L +LIDMYAKCG++ AL VF ++ +V
Sbjct: 290 DSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQ--DKNVS 347
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
WN++IGGLA+HG ES+ +F +M + PDEITF+ +L+AC+HGG+V + +F +
Sbjct: 348 TWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLM 407
Query: 325 GKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+R + P +HY CMVD LSR G + EA+EFI M +EP + +LL C HG+++L
Sbjct: 408 QQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIEL 467
Query: 384 AEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
AE ++L++ + D G +V LSN+YA W + R+ M+ GV K G + ++
Sbjct: 468 AEHANRELLKARSDASGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVID 524
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 185/513 (36%), Positives = 289/513 (56%), Gaps = 76/513 (14%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++SF ALS+ G+++Y+ K+ + + NP F NT+IRGY++S+NP +++SL+ M+ GV
Sbjct: 49 LISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVP 108
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
D+ TYPF+ A RL +L H ++ K G+ SDLF+ N+LI Y +CG A +V
Sbjct: 109 VDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDV 168
Query: 121 FDGMPTKMSVSWNSMLDGYAK---------------------------------CGEM-N 146
FD + V+WN M++ + C ++ N
Sbjct: 169 FDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGN 228
Query: 147 MARQVF------ELMPERNVVSWSALIDGYVKCGD------------------------- 175
+ R F EL + N+ +A++D Y KC D
Sbjct: 229 LERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSG 288
Query: 176 ------YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSL 228
++EAL +F++M+ + +E+TLV VL ACA GALDQG+ + +IDK ++
Sbjct: 289 LAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGK-YIHLLIDKFEINC 347
Query: 229 TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288
L L+T+L+DMYAKCG+I AL VF + +V WNA+IGGLAMHG ++++ LF +
Sbjct: 348 DLVLETALVDMYAKCGSIDLALQVFRRMRVR--NVFTWNALIGGLAMHGHGEDAISLFDQ 405
Query: 289 MQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAG 347
M+ + PD++TF+ LL AC+H GLV E F+++ + + P+ EHY C+VD L RA
Sbjct: 406 MEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRAR 465
Query: 348 QVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSN 407
+V +A FI MP++ + + +LL C + G DLAE +G++++EL+PD GRYV LSN
Sbjct: 466 KVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSN 525
Query: 408 VYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+YA +WD A R+ M+ +G++K PG S++E
Sbjct: 526 LYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIE 558
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 173/432 (40%), Positives = 260/432 (60%), Gaps = 6/432 (1%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG--VSPDHLTYPFL 69
N+ YS ++L + P +F N++IR YSKS P+KS + K+L++ +SPD+ T+ FL
Sbjct: 58 NLLYSNQILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFL 117
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+ + A E AVH + K G+E D + + LI MY + VF+ +
Sbjct: 118 VRTCAQSAC-EAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDL 176
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
V +M+ AKCG++ AR +F+ MP+R+ VSW+A+I GY + G +EAL +F+ M+
Sbjct: 177 VCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMD 236
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G K NEV+++SV+ AC HLGALDQG+ Y+ + +T+ L T+L+DMY KCG + A
Sbjct: 237 GVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRA 296
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
L VF E ++ +V W+ IGGLAM+G+ ++ LELF+ M+ GI P+EITF+ +L C+
Sbjct: 297 LKVF--WEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCS 354
Query: 310 HGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
G V E F S+ + G+ P+ EHY CMVD RAG++ EA FI MPL+P A
Sbjct: 355 VVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAW 414
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C + ++L E +KL+E++ + G YV LSN+YA WD R++M+
Sbjct: 415 GALLNACRMYKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAE 474
Query: 429 GVKKYPGWSFVE 440
G+ K PG S +E
Sbjct: 475 GISKLPGCSVME 486
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 32/247 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
SA + G+I ++ + + WN +I GY++ ++++LF M GV + +
Sbjct: 184 SACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEV 243
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
+ + A L + HA I K + + + +L+ MY CG++ A +VF
Sbjct: 244 SMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVF--- 300
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
W EMN E+NV +WS I G G ++ L +F
Sbjct: 301 -------W-----------EMN----------EKNVYTWSTAIGGLAMNGYGQKCLELFS 332
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKC 243
M+ G NE+T +SVL C+ +G +D+GR M D G+ L ++D+Y +
Sbjct: 333 FMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRA 392
Query: 244 GAIKEAL 250
G ++EAL
Sbjct: 393 GRLEEAL 399
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 178/424 (41%), Positives = 261/424 (61%), Gaps = 3/424 (0%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V +S+ I WN++I GYSK +++I LF +ML+ GV D T L AS +
Sbjct: 193 QVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHC 252
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+L VH I TG E D ++N+LI MY CG + +A+ VFD M K VSW SM++
Sbjct: 253 NLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVN 312
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
YA G + A Q+F MP +NVVSW+++I V+ G Y EA+ +F M G ++ T
Sbjct: 313 AYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDAT 372
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
LVS+L C++ G L G+ Y+ D +++++ L SLIDMYAKCGA++ A+ +F G+
Sbjct: 373 LVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMP 432
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV-ME 316
+ +V+ WN +IG LA+HGF +E++E+F MQ G+ PDEITF GLLSAC+H GLV M
Sbjct: 433 --EKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMG 490
Query: 317 AWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
+YF + + P EHYACMVD L R G + EA I +MP++P + G+LL C
Sbjct: 491 RYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACR 550
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436
+G L++A+ + K+L+EL + G YV LSN+Y+ +RWD+ + R+ M+ G+KK
Sbjct: 551 IYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIKKCRAI 610
Query: 437 SFVE 440
SF+E
Sbjct: 611 SFIE 614
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 180/377 (47%), Gaps = 40/377 (10%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ Y+ + + P F +N +IRGYS S +P KS+ LF +M+ AG P+ T+PF+
Sbjct: 85 GDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVL 144
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA AV VHAQ K G + N++
Sbjct: 145 KACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAI-------------------------- 178
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
L Y C + ARQVF+ + +R +VSW+++I GY K G EA+++F+EM +G
Sbjct: 179 -----LTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLG 233
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+A+ TLVS+L A + LD GR + Y++ G+ + + +LIDMYAKCG ++ A
Sbjct: 234 VEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAK 293
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + DV+ W +M+ A G V+ ++++F M + + +++ ++
Sbjct: 294 HVFD--QMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNV----VSWNSIICCLVQ 347
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVT---EAYEFICQMPLEPTASM 367
G EA F + G++P ++ S G + +A+ +IC + + ++
Sbjct: 348 EGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTL 407
Query: 368 LGSLLTGCMNHGKLDLA 384
SL+ G L A
Sbjct: 408 CNSLIDMYAKCGALQTA 424
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 126/284 (44%), Gaps = 33/284 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + ++ +H+ + WN++I + +++ LF +M +GV PD T +
Sbjct: 318 GLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSIL 377
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
L H I + + NSLI MY CG + A ++F GMP K V
Sbjct: 378 SCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVV 437
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN ++ A + G+ +EA+ +F+ M+ G
Sbjct: 438 SWNVIIGALA--------------------------LHGF-----GEEAIEMFKSMQASG 466
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
+E+T +L AC+H G +D GR MI +S + ++D+ + G + EA
Sbjct: 467 LYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEA 526
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
+ + + + DV++W A++G ++G ++ + ++ ++ +G
Sbjct: 527 MTLIQKMPV-KPDVVVWGALLGACRIYGNLEIAKQIMKQLLELG 569
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 181/449 (40%), Positives = 265/449 (59%), Gaps = 15/449 (3%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+F + Y G++ Y+C+V + +P + NT+I+ + + N + +F KML G+
Sbjct: 43 LLAFCSHPYQGSLTYACRVFERIHHPTLCICNTIIKTFLVNGNFYGTFHVFTKMLHNGLG 102
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+ T P++ KA L L VH +K G D+F+ NSL+ MY CGD++ AR V
Sbjct: 103 PDNYTIPYVLKACAALRDCSLGKMVHGYSSKLGLVFDIFVGNSLMAMYSVCGDVIAARHV 162
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD MP +VSW+ M+ GYAK G+++ AR F+ PE++ W A+I GYV+ +KE L
Sbjct: 163 FDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGL 222
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F ++ +E VS+L ACAHLGALD G + RY+ K +SL++ L TSL+DMY
Sbjct: 223 YLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLSIRLSTSLLDMY 282
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG ++ A +F + + D++ WNAMI GLAMHG +L++F+EM+ GI PD+IT
Sbjct: 283 AKCGNLELAKRLFDSMP--ERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIKPDDIT 340
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+ + +AC++ G+ E + + PKSEHY C+VD LSRAG EA I ++
Sbjct: 341 FIAVFTACSYSGMAHEGLQLLDKMSSLYEIEPKSEHYGCLVDLLSRAGLFGEAMVMIRRI 400
Query: 360 PLEPTASMLGS--------LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI 411
+ S GS L+ C NHG+ LAE K+L+ L+ +H G YV LSN+YA
Sbjct: 401 ---TSTSWNGSEETLAWRAFLSACCNHGQAQLAERAAKRLLRLE-NHSGVYVLLSNLYAA 456
Query: 412 FKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ +AR R M +GV K PG S VE
Sbjct: 457 SGKHSDARRVRNMMRNKGVDKAPGCSSVE 485
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 177/445 (39%), Positives = 265/445 (59%), Gaps = 8/445 (1%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+F + G++ ++ K+ + +P I NT+I+ + +I ++ +ML G+
Sbjct: 43 LLAFCSHPLHGSLPHAWKLFQQIQHPTICICNTMIKAFVLKGKLINTIQIYSQMLENGLY 102
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+ T P++ KA L L + H Q K G+ D+F+ N+LI MY S G++ AR +
Sbjct: 103 PDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTLIAMYSSFGNVRAARCI 162
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD MP +VSW M+ GYAK G++ AR +F+ P ++ W ++I GYV+ +KE L
Sbjct: 163 FDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGL 222
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F M+ G + +E LVS+LCACAHLGA++ G + RY+ G L++ L T LIDMY
Sbjct: 223 QMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMY 282
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG++ A +F G+ Q D + WNAMI G+AM+G +L LF+EM+ G+ PD+IT
Sbjct: 283 AKCGSLDIAKKLFDGMS--QRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDIT 340
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+ + +AC++ G+ EA S+ M PKSEHY C+VD L RAG + EA E I +M
Sbjct: 341 FIAIFTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHYGCIVDLLGRAGLLKEAKELILKM 400
Query: 360 P--LEPTASMLG--SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
P PT + +LL+ C +HG+ ++AE ++L L+ H G YV LSN+YA +
Sbjct: 401 PNSSSPTEQAIAWRALLSACCSHGQTEVAEDAAQRLFHLE-HHSGAYVLLSNLYAAAGKQ 459
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
D R R+ ME RGV K PG S V+
Sbjct: 460 DHVRRIRKMMENRGVDKAPGCSSVK 484
>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 515
Score = 330 bits (847), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 180/446 (40%), Positives = 265/446 (59%), Gaps = 11/446 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+F ALS G+ Y+ + +H+ NP IF +N++I Y+ + +K +F KML +
Sbjct: 26 ILAFFALSPRGDFRYAETLFTHIPNPNIFDYNSIITSYTTNSQFHKLFFVFTKMLNTNIR 85
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ T+ L KA L+ E V K G SD++ +S+I+ + I AR+V
Sbjct: 86 PNSHTFTTLVKACVSLSSLE---QVFTLSMKLGNSSDVYFVSSVINAFSKHSAIHLARQV 142
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD + V W S++ GY CG +N AR VF+ MP RN S+SA++ GYV+ G + E +
Sbjct: 143 FDECSNRNVVCWTSLVSGYCSCGLVNEARDVFDKMPLRNEASYSAMVSGYVRNGFFSEGV 202
Query: 181 VIFEEMR--DVGS---KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
+F E++ D G K N LVSVL AC +GA ++G+ + Y+ + GL L L T+
Sbjct: 203 QLFRELKKKDKGCACLKFNGALLVSVLNACTMVGAFEEGKWIHSYVEENGLEYDLELGTA 262
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
LID Y KCG +K A VF+ + DV W+AMI GLA++G K +LELF +M+ VG
Sbjct: 263 LIDFYMKCGWVKGAEKVFNKMP--VKDVATWSAMILGLAINGNNKMALELFEKMEKVGPK 320
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYE 354
P+E+TF+G+L+AC H L E+ F + ++ + P EHY C+VD L+R+GQV +A
Sbjct: 321 PNEVTFVGVLTACNHKSLFGESARLFGIMSEKYNITPSIEHYGCVVDVLARSGQVKKALT 380
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414
FI M +EP ++ GSLL GC+ HG +L + VGK L+E +P H GRYV L+N+YA +
Sbjct: 381 FINSMHIEPDGAIWGSLLNGCLMHGHYELGQKVGKYLIEFEPKHSGRYVLLANMYANMGK 440
Query: 415 WDEARTTREAMETRGVKKYPGWSFVE 440
W+ R+ M+ RGV GWSF+E
Sbjct: 441 WEGVSEVRKLMKDRGVMIVSGWSFIE 466
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 330 bits (846), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 259/473 (54%), Gaps = 34/473 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGV 59
+L A++ + Y+ ++ H NP F NT+IR S S+ P S+ F+++ R +
Sbjct: 40 LLLHCAITISDALHYALRLFHHFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTL 99
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
SPD T+ F KA + +H+Q + G+++ +F+ +LI MY CGD AR
Sbjct: 100 SPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARR 159
Query: 120 VFDGM-------------------------------PTKMSVSWNSMLDGYAKCGEMNMA 148
VFD M P + SWN ML GYAK GE+ +A
Sbjct: 160 VFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLA 219
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
R+VF MP R+ VSWS +I G+ G + EA F E+ + NEV+L VL ACA
Sbjct: 220 RRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQA 279
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
GA + G+++ ++ G + +LID Y+KCG + A +VF + +S ++ W +
Sbjct: 280 GAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARS-IVSWTS 338
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-R 327
+I GLAMHG +E+++LF EM+ G+ PD ITF+ LL AC+H GLV E F +
Sbjct: 339 IIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLY 398
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
G+ P EHY CMVD RA ++ +AYEFIC+MP+ P A + +LL C HG +++AE+V
Sbjct: 399 GIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELV 458
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+L E+ PD+ G +V LSNVYA+ +W + + R M +KK PGWS +E
Sbjct: 459 KARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIE 511
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 164/411 (39%), Positives = 256/411 (62%), Gaps = 3/411 (0%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I G+ +S+ S FV M+R GV P +TY + A G+ L + VH +
Sbjct: 91 WNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVV 150
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+G DL + N+LI MY C ++ A E+F+GM + +VSW S++ G+ + G+++ AR
Sbjct: 151 ASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQART 210
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F+ MPER+ VSW+A+IDGYV+ G ++EAL +F EM+ +A+E T+VSV+ ACA LGA
Sbjct: 211 LFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGA 270
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L+ G YM G+ + + +L+DMY+KCG+I++AL VF E + D W A+I
Sbjct: 271 LETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFK--EMYIRDKFTWTAVI 328
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGM 329
GLA++G +E++ +F M V PDE+TF+G+L+AC H GLV + FF S+ G G+
Sbjct: 329 LGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGI 388
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P H+ C++D L RAG++ EA E I MP+ P +++ G+LL C HG ++ ++ +
Sbjct: 389 APNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAE 448
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L+EL ++ Y+ LSN+YA RW++ R R+ + +G+KK PG S +E
Sbjct: 449 HLLELDTENGMVYILLSNLYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLIE 499
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/367 (26%), Positives = 158/367 (43%), Gaps = 65/367 (17%)
Query: 48 ISLFVKMLRAGVSPDHLTYPFLAKASGRLAKR-ELAVAVHAQIAKTGYESDLFISNSLIH 106
+ ++V ML G PD T+P L KA A+R + AVHA + K G E + +++SL+
Sbjct: 3 LRVYVGMLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVL 62
Query: 107 MYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSAL 166
MY + GD AR + D P A+ G+ V W+AL
Sbjct: 63 MYAARGDGAVARTLLDAWP--------------ARGGD--------------TPVVWNAL 94
Query: 167 IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL 226
I G+ + ++ + F +M G VT ++VL AC + G + + ++ G+
Sbjct: 95 ISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGV 154
Query: 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS------------------------- 261
L + +LIDMYA+C + A +F G+E +
Sbjct: 155 LPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDC 214
Query: 262 ----DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
D + W AMI G G +E+LE+F EMQ + DE T + +++ACA G +
Sbjct: 215 MPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETG 274
Query: 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP----TASMLGSLLT 373
+ + + G+ + +VD S+ G + +A +M + TA +LG +
Sbjct: 275 EWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVN 334
Query: 374 GCMNHGK 380
G HG+
Sbjct: 335 G---HGE 338
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 33/275 (12%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S LG +D + + + W +I GY ++ +++ +F +M + V D
Sbjct: 196 ISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADE 255
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + A +L E +++ G + D F+ N+L+ MY CG I A VF
Sbjct: 256 FTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKE 315
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + + +W+A+I G G +EA+ +F
Sbjct: 316 MYIR-------------------------------DKFTWTAVILGLAVNGHGEEAINMF 344
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAK 242
M V +EVT + VL AC H G +D+GR M G++ + LID+ +
Sbjct: 345 YRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGR 404
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
G +KEAL G + + IW ++ +HG
Sbjct: 405 AGKLKEALETI-GNMPMRPNSAIWGTLLAACRVHG 438
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 34/174 (19%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+I + V + F W VI G + + + ++I++F +MLR +PD +T+
Sbjct: 301 SKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFI 360
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNS--------------LIHMYGSCGD 113
+ L HA + G D F+S + LI + G G
Sbjct: 361 GV-----------LTACTHAGLVDKG--RDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGK 407
Query: 114 IVYAREVFDGMPTK-MSVSWNSML-----DGYAKCGEMNMARQVFELMPERNVV 161
+ A E MP + S W ++L G ++ G++ A + EL E +V
Sbjct: 408 LKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQL-AAEHLLELDTENGMV 460
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 165/439 (37%), Positives = 262/439 (59%), Gaps = 12/439 (2%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG---------VSPD 62
++DY+ + + +P + +N +IR + + + +I + +MLR + PD
Sbjct: 35 DMDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPD 94
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
T+PF+ KA RL L VHAQ K G +S L N+LI MY C +++ A +FD
Sbjct: 95 EFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFD 154
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
M + ++SWN ++ G+ + G+M AR +F+ MP R +VSW+A+I GY + G Y +AL +
Sbjct: 155 EMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDV 214
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F EM+ G + +E +++SVL ACA LGAL+ G+ + + GL + +LI+MY K
Sbjct: 215 FREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTK 274
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG I +A +F + DV+ W+ MIGGLA HG V+E++ +F M+ I P+ ITF+
Sbjct: 275 CGCIDQACQLFD--QMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFV 332
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
GLLSACAH G E +F ++ K + P+ EHY +VD L RAG++++A + + +MP+
Sbjct: 333 GLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPM 392
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
+P + + GSLL+ C H +++A I + L EL+PD G YV LSN+YA +WD+
Sbjct: 393 KPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIYADLGKWDDVSRM 452
Query: 422 REAMETRGVKKYPGWSFVE 440
R+ + ++ +KK PG S +E
Sbjct: 453 RKLVRSKRMKKTPGCSLIE 471
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 131/300 (43%), Gaps = 39/300 (13%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG + + + + N I W +I GY++ + ++ +F +M AG+ PD + +
Sbjct: 174 LGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISV 233
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A +L E +H A+ G I N+LI MY CG I A ++FD M +
Sbjct: 234 LPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDV 293
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+SW++M+ G A G++ A +FE M + N+
Sbjct: 294 ISWSTMIGGLANHGKVREAIAIFERMKQTNI----------------------------- 324
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKE 248
K N +T V +L ACAH G ++G M M D + + SL+D+ + G + +
Sbjct: 325 --KPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQ 382
Query: 249 ALIVFHGVEK--HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
AL + VEK + D IW +++ H ++ ++ ++ + PD+ LLS
Sbjct: 383 ALDI---VEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLE--ELEPDDTGNYVLLS 437
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 173/436 (39%), Positives = 268/436 (61%), Gaps = 8/436 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR---AGVSPDHLTY 66
LG++ Y+ + L +P IF +N +IR Y+ +++ + +IS+FV+ML V PD T+
Sbjct: 55 LGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTF 114
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
PF+ K+ + L + VH + K G + N+LI MY GD+ A +VF+ M
Sbjct: 115 PFVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSH 174
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ +SWNS++ GY K G+MN AR++F+ MP R +VSW+ +I GY + G Y +AL +F EM
Sbjct: 175 RDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREM 234
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ VG + +E+++++VL ACA LGAL+ G+ + Y G + +LI+MYAKCG I
Sbjct: 235 QMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCI 294
Query: 247 KEALIVFHG-VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
EA +F VEK DV+ W+ MIGGLA HG E+++LF EM V + P+EITFLG+L
Sbjct: 295 DEAWNLFDQLVEK---DVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVL 351
Query: 306 SACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
AC+H GL E +F + + P+ EHY C++D L R+G + +A + I +MP++P
Sbjct: 352 LACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPD 411
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
+ + SLL+ C H L +A I K+L+EL+P+ G YV L+N+YA +W++ R+
Sbjct: 412 SRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKL 471
Query: 425 METRGVKKYPGWSFVE 440
+ + +KK PG S +E
Sbjct: 472 IRNKRIKKTPGSSSIE 487
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 177/430 (41%), Positives = 256/430 (59%), Gaps = 43/430 (10%)
Query: 22 HLSNPRI--FYWNTVIRGYSKSK----NPNKS-ISLFVKMLRAGVSPDHLTYPFLAKASG 74
H S+P + F WNT+IR + +++ P S IS+FV+M GV PD T+PFL ++
Sbjct: 16 HFSHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFA 75
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
+ L +VHAQI + G D F+ SLI MY S G +
Sbjct: 76 SPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLV-------------------- 115
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS--- 191
+MAR +F +MPERNV+SWS +I+GYV+CG YKEAL +F EM+ +G
Sbjct: 116 -----------DMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDV 164
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ NE T+ VL AC LGAL+ G+ Y+ G+ + + L T+LIDMYAKCG++++A
Sbjct: 165 RPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATW 224
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF + ++ DV+ W+AMI GLAMHG +E + LF++M G+ P+ +TFL + AC HG
Sbjct: 225 VFSNLGPNK-DVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHG 283
Query: 312 GLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GLV E + + + + ++P +HY CMVD RAG++ EA+ + MP+EP + G+
Sbjct: 284 GLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGA 343
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL+G HG ++ E+ KKL+EL+P + G YV LSNVYA RW++ R R+ MET G+
Sbjct: 344 LLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGI 403
Query: 431 KKYPGWSFVE 440
KK PG S +E
Sbjct: 404 KKVPGCSLIE 413
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 38/287 (13%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS--- 60
S S G +D + + + + + W+ +I GY + ++++LF +M GV+
Sbjct: 106 ISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVR 165
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ T + A GRL E HA I K G D+ + +LI MY CG + A V
Sbjct: 166 PNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWV 225
Query: 121 FDGM-PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
F + P K ++W SA+I G G +E
Sbjct: 226 FSNLGPNKDVMAW-------------------------------SAMISGLAMHGLAEEC 254
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLID 238
+ +F +M + G + N VT ++V CAC H G + +G+ LR M D + T+ ++D
Sbjct: 255 VGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVD 314
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLEL 285
+Y + G IKEA V + + DVL+W A++ G MHG + E+ EL
Sbjct: 315 LYGRAGRIKEAWNVVKSMPM-EPDVLVWGALLSGSRMHGDI-ETCEL 359
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 187/488 (38%), Positives = 279/488 (57%), Gaps = 50/488 (10%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++SF A+ G++ Y+ ++ + P F +N++IRGYS S +P ++ LF +M+ +G+S
Sbjct: 152 LISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLS 211
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ T PF+ KA G + AV VH K G S +F+ N+LI +Y CG I AR++
Sbjct: 212 PNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKL 271
Query: 121 FDGMPTKMSVSWNSML----------------DGYAKCGEMN------------------ 146
FD + K VSWNSM+ D YAKCG ++
Sbjct: 272 FDDITDKTLVSWNSMIEITGVKIDIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWT 331
Query: 147 -------------MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
+ARQ+F+ MP +NVVSW+++I Y++ G Y+EAL +F +MR+
Sbjct: 332 SMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVP 391
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+E TLVS+L AC+ LG L G+ + Y++ + + L SLIDMYAKCG + AL +F
Sbjct: 392 DEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIF 451
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313
+E +++ WN +IG LA+HG E+++LF EMQ G PDEIT GLLSAC+H GL
Sbjct: 452 --LEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGL 509
Query: 314 VMEAWYFFKSLGKRGMVPKS-EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
V Y+F +G V + EHYACMVD L R G + EA E I +MP++P + G+LL
Sbjct: 510 VDMGLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALL 569
Query: 373 TGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432
C HG +++ + + K+L+EL+P G YV +SN+Y +RW++ + R+ M RG+KK
Sbjct: 570 GACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKK 629
Query: 433 YPGWSFVE 440
S +E
Sbjct: 630 GRAISSIE 637
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 173/432 (40%), Positives = 264/432 (61%), Gaps = 4/432 (0%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSK-SKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
N+ Y+ KVL H P +F +N +I+ YS ++ ++ SL+ +ML P+ T+ FL
Sbjct: 31 NLHYAHKVLHHSPKPTLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLF 90
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L+ L +H K+G+E DLF + +L+ MY G + AR++FD MP +
Sbjct: 91 SACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVP 150
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDV 189
+WN+M+ G+A+ G+M++A ++F LMP RNVVSW+ +I GY + Y EAL +F M ++
Sbjct: 151 TWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEK 210
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G N VTL S+ A A+LGAL+ G+ + Y G L + ++++MYAKCG I A
Sbjct: 211 GMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVA 270
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF+ + + ++ WN+MI GLA+HG ++L+L+ +M G +PD++TF+GLL AC
Sbjct: 271 WKVFNEIGSLR-NLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACT 329
Query: 310 HGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
HGG+V + + FKS+ ++PK EHY CMVD L RAGQ+ EAYE I +MP++P + +
Sbjct: 330 HGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIW 389
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C H ++LAEI + L L+P + G YV LSN+YA +WD R+ M+
Sbjct: 390 GALLGACSFHDNVELAEIAAESLFALEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGS 449
Query: 429 GVKKYPGWSFVE 440
+ K G SF+E
Sbjct: 450 KITKSAGHSFIE 461
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 134/274 (48%), Gaps = 35/274 (12%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPF 68
G++D + ++ + + + W T+I GYS+SK +++ LF++M + G+ P+ +T
Sbjct: 162 FGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLAS 221
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+ A L E+ V A K G+ +L++SN+++ MY CG I A +VF+ + +
Sbjct: 222 IFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLR 281
Query: 129 SV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
++ SWNSM+ G A GE C + L ++++M
Sbjct: 282 NLCSWNSMIMGLAVHGEC---------------------------C----KTLKLYDQML 310
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAI 246
G+ ++VT V +L AC H G +++GR + + M + L ++D+ + G +
Sbjct: 311 GEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAGQL 370
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+EA V + + D +IW A++G + H V+
Sbjct: 371 REAYEVIQRMPM-KPDSVIWGALLGACSFHDNVE 403
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 190/511 (37%), Positives = 280/511 (54%), Gaps = 76/511 (14%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++F AL G++ Y+ V + + NP F N++IRGY+ P ++I + M+ G+
Sbjct: 78 IVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLD 137
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD T+P L K+ G L + + +H K G+ SD +I N+L++MY +CG +V AR+V
Sbjct: 138 PDRFTFPSLFKSCGVLCEGK---QLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKV 194
Query: 121 FDGMPTKMSVSWNSMLDGYAK--------------------------------CG---EM 145
FD M K VSW +M+ YA+ C ++
Sbjct: 195 FDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDL 254
Query: 146 NMARQVFELMPERNV----VSWSALIDGYVKCG--------------------------- 174
A+QV + + E + V SAL+D Y KCG
Sbjct: 255 ETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGH 314
Query: 175 ----DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTL 230
DY+EAL +F EM+ G K ++VT+ S+L AC HLGAL+ G+ + Y+ + + + +
Sbjct: 315 VEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDV 374
Query: 231 PLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ 290
L T+L+DMYAKCG+I+ A+ VF E + DV+ W A+I GLAM G ++LELF EMQ
Sbjct: 375 ALGTALVDMYAKCGSIESAMRVFQ--EMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQ 432
Query: 291 IVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQV 349
+ + PD ITF+G+L+AC+H GLV E +F S+ K G+ P EHY CMVD L RAG++
Sbjct: 433 MSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRI 492
Query: 350 TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409
EA + I MP+ P +L LL+ C HG L +AE ++L+EL P + G YV LSN+Y
Sbjct: 493 AEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIY 552
Query: 410 AIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ K W+ A+ RE M R +KK PG S +E
Sbjct: 553 SSMKNWEAAKKMRELMVERNIKKPPGCSAIE 583
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 174/445 (39%), Positives = 273/445 (61%), Gaps = 12/445 (2%)
Query: 1 MLSFSALSYL-GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR--- 56
+++F +LS + G +DY+ V S + +P F + +I+G+S + NP +S+ L+ +ML
Sbjct: 44 LIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLN 103
Query: 57 --AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114
+GV + P + KA G+L + VH Q+ KT D F+ NS++ MY G+I
Sbjct: 104 YSSGVE---FSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEI 160
Query: 115 VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
AR VFD MP + VSWNSM+ GY K GE+ +A++VFE M +++VV+W+++I YV+
Sbjct: 161 ELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNR 220
Query: 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP-LQ 233
+AL +F EM +G + + +VSVL A A LG +++G+ + Y+ + L+ +
Sbjct: 221 CPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIG 280
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
++LIDMY+KCG I+ A VF + H+ ++ WN+MI GLA+HG +E+L++F EM+ +
Sbjct: 281 SALIDMYSKCGYIENAYHVFRSI-SHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMD 339
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEA 352
I P+EITFLGLLS C+HGGLV E ++F+S+ ++ +VP+ +HY CM+D RAG++ +A
Sbjct: 340 IEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDA 399
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412
I MP E ++L+ M HG +++ + + +EL PD YV LSN+YA
Sbjct: 400 LGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKA 459
Query: 413 KRWDEARTTREAMETRGVKKYPGWS 437
RWD+ R M RGVKK G S
Sbjct: 460 GRWDDVAKIRLMMRQRGVKKIAGCS 484
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 166/427 (38%), Positives = 260/427 (60%), Gaps = 3/427 (0%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y+ ++ L N F WNT+++ + + ++ SL+ ML + P++ T+ F+ +A
Sbjct: 64 YAERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACI 123
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
+ ++ + H Q+ K G+ES F+ N LIH+Y +CG + AR +FD + V+W
Sbjct: 124 DVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTC 183
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ GY G++ +AR++F+ MPE+N VSW ALI GYV+ G +KEAL +F +M+ G + N
Sbjct: 184 LISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLN 243
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
++V L ACA LGALDQGR + Y+ +SL L T+LIDMYAKCG I+ A VF
Sbjct: 244 RASIVGALTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFD 303
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
E DV + +I GLA H + +++LF MQ G+ P+E+TF+ +L+AC+ G+V
Sbjct: 304 --EMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMV 361
Query: 315 MEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
E F+S+ R ++ P+ +HY C+VD L RAG++ EA + + +MPL+P + LG+LL
Sbjct: 362 DEGLRIFESMSNRYVIEPQIQHYGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGALLD 421
Query: 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
C HG + L E + LV+ DH G +V LSN+YA +W++A R+ ME + ++K
Sbjct: 422 ACRVHGDVQLGEEMVDSLVQRCLDHGGVHVLLSNMYASADKWEDASKIRKKMEDKNIRKL 481
Query: 434 PGWSFVE 440
PG S +E
Sbjct: 482 PGCSSIE 488
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 72/354 (20%), Positives = 149/354 (42%), Gaps = 15/354 (4%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCG---DIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
+ + + T D + + +I ++ + YA +F + K + WN+M+ + +
Sbjct: 30 IQSHLTVTATLKDPYAAAKIISLHAHSNARSSLFYAERLFLCLQNKSTFIWNTMMQAFVE 89
Query: 142 CGEMNMARQVFELMPERNVV----SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
E A +++ M E N + ++S +I + + + L ++ G ++ +
Sbjct: 90 KNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGWESYDFV 149
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
++ A+ G +D + R M D + + T LI Y G + A +F +
Sbjct: 150 QNGLIHLYANCGFMD----LARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDRMP 205
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+ + + W A+I G GF KE+LE+F +MQ+ G + + +G L+ACA G + +
Sbjct: 206 --EKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQG 263
Query: 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
+ + + M ++D ++ G + A +M + L++G N
Sbjct: 264 RWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMD-DRDVYAFTCLISGLAN 322
Query: 378 HGKLDLA-EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
H K + A ++ + E ++ +V + N + DE E+M R V
Sbjct: 323 HDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYV 376
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 166/431 (38%), Positives = 256/431 (59%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + V + WN +I Y+K +S LF+ M V P +T +
Sbjct: 188 GQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVL 247
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A +L VH+ + ES+L + N++I MY CG++ A +F M + +
Sbjct: 248 SACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDII 307
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW +++ G+ GE+++AR F+ MPE++ VSW+A+IDGY++ +KEAL +F M+
Sbjct: 308 SWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATN 367
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K +E T+VSVL ACAHLGAL+ G + Y+ + L ++ +LIDMY KCG + +A
Sbjct: 368 VKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAE 427
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F E Q D W AMI GLA++G +++L++F+ M I PDEIT++G+LSAC H
Sbjct: 428 SIFR--EMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTH 485
Query: 311 GGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV + YF + + G+ P HY C+VD L+RAG++ EAYE I MP++ + + G
Sbjct: 486 TGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWG 545
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL GC + + D+AE+V K+++EL+PD+ YV L N+YA KRW++ R R+ M +G
Sbjct: 546 ALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKG 605
Query: 430 VKKYPGWSFVE 440
+KK PG S +E
Sbjct: 606 IKKXPGCSLIE 616
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 122/442 (27%), Positives = 198/442 (44%), Gaps = 76/442 (17%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++F G+ Y+ ++ + P +F WNT+IRGYS+ P +SL+++MLR GV
Sbjct: 77 VMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVK 136
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD T+PFL K R E +H + K G + ++F+ +L+ MY CG + AR V
Sbjct: 137 PDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGV 196
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD P ++WN ++ Y K G+ +R++F +M ++ V+ +
Sbjct: 197 FDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTT---------------- 240
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
VTLV VL AC+ L L G+ + Y+ + + L L+ ++IDMY
Sbjct: 241 ---------------VTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMY 285
Query: 241 AKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAMIG 271
A CG + AL +F + + D + W AMI
Sbjct: 286 ADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMID 345
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAW---YFFKSLGKR 327
G KE+LELF MQ + PDE T + +L+ACAH G L + W Y ++ K
Sbjct: 346 GYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKN 405
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP----TASMLGSLLTGCMNHGKLDL 383
+ ++ ++D + G V +A +M TA ++G + G HG+ L
Sbjct: 406 DLFVRN----ALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNG---HGEKAL 458
Query: 384 AEIVGKKLVELQPDHDGRYVGL 405
+ PD + Y+G+
Sbjct: 459 DMFSNMLKASILPD-EITYIGV 479
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 174/445 (39%), Positives = 272/445 (61%), Gaps = 9/445 (2%)
Query: 2 LSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP 61
L+F A S GNI+Y+ K+ + NP ++ WNT+IR +S+S P +ISLFV ML + + P
Sbjct: 67 LTFCA-SPSGNINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQP 125
Query: 62 DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121
+LTYP + KA +L +H ++ K G ++D FI N++I+MY + G + AR VF
Sbjct: 126 QYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVF 185
Query: 122 DGMPTKM----SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
DG ++ V+ NSM+ GYAKCGE++ +R +F+ M R VSW+++I GYV+ G
Sbjct: 186 DGKKLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLM 245
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
EAL +F +M+ G + +E T+VS+L ACAHLGAL G+ + Y+ L + + T++I
Sbjct: 246 EALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAII 305
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITP 296
DMY KCG+++ A+ VF + + WN++I GLAM+G +E+ E F++++ + P
Sbjct: 306 DMYCKCGSVENAVEVFETCPRR--GLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKP 363
Query: 297 DEITFLGLLSACAHGGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
D ++F+G+L+AC H G + +A YF + K + P +HY C+VD L +AG + EA E
Sbjct: 364 DSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEEL 423
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
I MPL+P A + GSLL+ C H + +A +++ EL P YV +SNV+A ++
Sbjct: 424 IKGMPLKPDAIIWGSLLSSCRKHRNVQIARRAAQRVYELNPSDASGYVLMSNVHAASNKF 483
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
+EA R M+ +K PG S +E
Sbjct: 484 EEAIEQRLLMKENLTEKEPGCSSIE 508
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 121/302 (40%), Gaps = 40/302 (13%)
Query: 99 FISNS--LIHMYGSCGDI-----VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQV 151
FISN L + C I +Y + G+ S ++ + G +N A ++
Sbjct: 24 FISNHPCLTMLQNHCTTINHFHQIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKL 83
Query: 152 FELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGAL 211
F MP N+ SW+ +I + + + A+ +F +M + +T SV A A LG
Sbjct: 84 FVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHA 143
Query: 212 DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG--VEKHQSDVLI---- 265
G + ++ GL + ++I MYA G + EA VF G +E + DV+
Sbjct: 144 HYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSM 203
Query: 266 ---------------------------WNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
WN+MI G +G + E+LELF +MQ+ G E
Sbjct: 204 IMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSE 263
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
T + LL+ACAH G + + + + ++D + G V A E
Sbjct: 264 FTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFET 323
Query: 359 MP 360
P
Sbjct: 324 CP 325
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 181/462 (39%), Positives = 267/462 (57%), Gaps = 37/462 (8%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
I Y+ ++ + + P F WNT IRG S+S +P +++L+ +M + V PD+ T+PF+ KA
Sbjct: 57 IRYALQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKA 116
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI------------------ 114
+L AVH ++ + G+ S++ + N+L+ + CGD+
Sbjct: 117 CTKLFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAW 176
Query: 115 -------------VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV 161
AR++FD MP + VSWN M+ Y K GEM AR++F+ P +++V
Sbjct: 177 SALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIV 236
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
SW+ALI GYV +EAL +F+EM VG +EVT++S+L ACA LG L+ G + +
Sbjct: 237 SWNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKI 296
Query: 222 I--DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
I +KG L+ L +L+DMYAKCG I +A+ VF + DV+ WN++I GLA HG
Sbjct: 297 IEMNKG-KLSTLLGNALVDMYAKCGNIGKAVRVFWLIR--DKDVVSWNSVISGLAFHGHA 353
Query: 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYAC 338
+ESL LF EM++ + PDE+TF+G+L+AC+H G V E +F + K + P H C
Sbjct: 354 EESLGLFREMKMTKVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGC 413
Query: 339 MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398
+VD L RAG + EA+ FI M +EP A + SLL C HG ++LA+ ++L+ ++ D
Sbjct: 414 VVDMLGRAGLLKEAFNFIASMKIEPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQ 473
Query: 399 DGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
G YV LSNVYA WD A R+ M+ GV K G SFVE
Sbjct: 474 SGDYVLLSNVYASQGEWDGAENVRKLMDDNGVTKNRGSSFVE 515
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 127/304 (41%), Gaps = 67/304 (22%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKS----------------------------- 41
G++ + K+ + + WN +I Y+K
Sbjct: 187 GDLSVARKLFDEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYV 246
Query: 42 -KNPNK-SISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK--TGYESD 97
+N N+ ++ LF +M G PD +T L A L E VHA+I + G S
Sbjct: 247 LRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLST 306
Query: 98 LFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE 157
L + N+L+ MY CG+I A VF + K VSWNS++ G A F
Sbjct: 307 L-LGNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLA-----------FH---- 350
Query: 158 RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMM 217
G +E+L +F EM+ +EVT V VL AC+H G +D+G
Sbjct: 351 ----------------GHAEESLGLFREMKMTKVCPDEVTFVGVLAACSHAGNVDEGNRY 394
Query: 218 LRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
M +K + T+ ++DM + G +KEA F K + + ++W +++G +H
Sbjct: 395 FHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAF-NFIASMKIEPNAIVWRSLLGACKVH 453
Query: 277 GFVK 280
G V+
Sbjct: 454 GDVE 457
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 120/263 (45%), Gaps = 9/263 (3%)
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
SM+ A + A Q+F +P+ + W+ I G + D A+ ++ +M K
Sbjct: 46 SMVGPNATSAVIRYALQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKP 105
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+ T VL AC L ++ G + ++ G + ++ +L+ +AKCG +K A +F
Sbjct: 106 DNFTFPFVLKACTKLFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIF 165
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313
+K DV+ W+A+I G A G + + +LF EM D +++ +++ G
Sbjct: 166 DDSDK--GDVVAWSALIAGYAQRGDLSVARKLFDEMP----KRDLVSWNVMITVYTKHGE 219
Query: 314 VMEAWYFFKSLGKRGMVPKSEHYACMV-DALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
+ A F + +V + V L+R + E ++ +C + P + SLL
Sbjct: 220 MESARRLFDEAPMKDIVSWNALIGGYVLRNLNR--EALELFDEMCGVGECPDEVTMLSLL 277
Query: 373 TGCMNHGKLDLAEIVGKKLVELQ 395
+ C + G L+ E V K++E+
Sbjct: 278 SACADLGDLESGEKVHAKIIEMN 300
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 170/420 (40%), Positives = 255/420 (60%), Gaps = 5/420 (1%)
Query: 24 SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAV 83
+N I WN+++ G+ + P+K++ LF +M GV P+ +T + A + L
Sbjct: 304 NNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGR 363
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
V I + +L + N+ I M+ CG++ AR +FD M + VSW +++DGYAK
Sbjct: 364 KVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMS 423
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR--DVGSKANEVTLVSV 201
E +AR +F+ MP +++ +W+ LI GY + G KEAL IF E++ G++ ++VTL+S
Sbjct: 424 EHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLST 483
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
L ACA LGA+D G + Y+ + + L L TSLIDMY+K G +++A+ VFH +
Sbjct: 484 LSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSI--GNK 541
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
DV +W+AMI GLAMHG + ++ELF +MQ + P+ +TF LL AC+H GLV E F
Sbjct: 542 DVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLF 601
Query: 322 KSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
+ + G+VPK++HY+CMVD L RAG + EA +FI MPL P+AS+ G+LL C HG
Sbjct: 602 DEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGN 661
Query: 381 LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L+LAE +L+E++P + G YV LSN+YA W+ R+ M G+KK G S +E
Sbjct: 662 LELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIE 721
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 177/388 (45%), Gaps = 65/388 (16%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGV 59
+ + +A S +DY+ KV + P ++ WN +IR + S +P +S+ +F++ML +
Sbjct: 177 LFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPF 236
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T+P L KA + AVH KT + D+F+ NSLIH Y SCG + A
Sbjct: 237 GPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYL 296
Query: 120 VFDGMP--TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
VF+ + K VSWNSM+ G+ + G P++
Sbjct: 297 VFEMIEGNNKDIVSWNSMVTGFVQGG-----------YPDK------------------- 326
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
AL +FE MR+ G N VT+VSV+ ACA L GR + Y+ + + L + + I
Sbjct: 327 -ALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATI 385
Query: 238 DMYAKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNA 268
DM+ KCG ++ A +F +EK + D+ WN
Sbjct: 386 DMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNV 445
Query: 269 MIGGLAMHGFVKESLELFTEMQIV--GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
+I G G KE+L +F E+Q+ G PD++T L LSACA G + + + K
Sbjct: 446 LISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKK 505
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYE 354
+ ++D S++G V +A E
Sbjct: 506 ERIQLNRNLATSLIDMYSKSGDVEKAIE 533
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 166/431 (38%), Positives = 256/431 (59%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + V + WN +I Y+K +S LF+ M V P +T +
Sbjct: 167 GQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVL 226
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A +L VH+ + ES+L + N++I MY CG++ A +F M + +
Sbjct: 227 SACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDII 286
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW +++ G+ GE+++AR F+ MPE++ VSW+A+IDGY++ +KEAL +F M+
Sbjct: 287 SWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATN 346
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K +E T+VSVL ACAHLGAL+ G + Y+ + L ++ +LIDMY KCG + +A
Sbjct: 347 VKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAE 406
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F E Q D W AMI GLA++G +++L++F+ M I PDEIT++G+LSAC H
Sbjct: 407 SIFR--EMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTH 464
Query: 311 GGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV + YF + + G+ P HY C+VD L+RAG++ EAYE I MP++ + + G
Sbjct: 465 TGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWG 524
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL GC + + D+AE+V K+++EL+PD+ YV L N+YA KRW++ R R+ M +G
Sbjct: 525 ALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKG 584
Query: 430 VKKYPGWSFVE 440
+KK PG S +E
Sbjct: 585 IKKTPGCSLIE 595
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 122/442 (27%), Positives = 198/442 (44%), Gaps = 76/442 (17%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++F G+ Y+ ++ + P +F WNT+IRGYS+ P +SL+++MLR GV
Sbjct: 56 VMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVK 115
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD T+PFL K R E +H + K G + ++F+ +L+ MY CG + AR V
Sbjct: 116 PDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGV 175
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD P ++WN ++ Y K G+ +R++F +M ++ V+ +
Sbjct: 176 FDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTT---------------- 219
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
VTLV VL AC+ L L G+ + Y+ + + L L+ ++IDMY
Sbjct: 220 ---------------VTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMY 264
Query: 241 AKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAMIG 271
A CG + AL +F + + D + W AMI
Sbjct: 265 ADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMID 324
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAW---YFFKSLGKR 327
G KE+LELF MQ + PDE T + +L+ACAH G L + W Y ++ K
Sbjct: 325 GYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKN 384
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP----TASMLGSLLTGCMNHGKLDL 383
+ ++ ++D + G V +A +M TA ++G + G HG+ L
Sbjct: 385 DLFVRN----ALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNG---HGEKAL 437
Query: 384 AEIVGKKLVELQPDHDGRYVGL 405
+ PD + Y+G+
Sbjct: 438 DMFSNMLKASILPD-EITYIGV 458
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 167/436 (38%), Positives = 260/436 (59%), Gaps = 3/436 (0%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A + LG Y+ + S+ ++P + +NT I+ SK+ +P +I L+ ++ G+ PD +
Sbjct: 65 ACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYS 124
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
P + KA +L+ E+ +H Q + + D+ ++ SLI MY SCG + AR++FD +
Sbjct: 125 IPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVG 184
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
K WN+M+ GY K GE+ AR+VF MP+RNV+SW+ LI GY + EA+ +F +
Sbjct: 185 FKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRK 244
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M+ + +E+ +++VL ACA LGAL+ G + Y+ GL + L +LIDMYAK G
Sbjct: 245 MQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGN 304
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
I+ AL VF ++ Q V+ W+ +I LA+HG E++++F M+ + P+E+TF+ +L
Sbjct: 305 IRRALEVFENMK--QKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAIL 362
Query: 306 SACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
SAC+H G+V Y+F + + PK EHY CM+D L+RAG + EA + + MP E
Sbjct: 363 SACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEAN 422
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
A + GSLL H +LA++ K L +L+P + G YV LSN YA +W+E+ T R+
Sbjct: 423 AMIWGSLLAASNTHRDAELAQLALKHLAKLEPGNSGNYVLLSNTYAALGKWNESGTVRKL 482
Query: 425 METRGVKKYPGWSFVE 440
M GVKK PG S +E
Sbjct: 483 MRNAGVKKAPGGSVIE 498
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 107/256 (41%), Gaps = 29/256 (11%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
+ +D G + A +F ++ ++ I K A+ ++ +R G +
Sbjct: 60 SQFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLR 119
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ ++ SVL A L A++ GR + + L + + + TSLI MY+ CG + +A +
Sbjct: 120 PDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKL 179
Query: 253 FHGV-----------------------------EKHQSDVLIWNAMIGGLAMHGFVKESL 283
F V E Q +V+ W +I G A E++
Sbjct: 180 FDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAI 239
Query: 284 ELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDAL 343
ELF +MQ+ + PDEI L +LSACA G + + + K G+ Y ++D
Sbjct: 240 ELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMY 299
Query: 344 SRAGQVTEAYEFICQM 359
+++G + A E M
Sbjct: 300 AKSGNIRRALEVFENM 315
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 180/494 (36%), Positives = 272/494 (55%), Gaps = 66/494 (13%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
L N Y+ V + +S+P WNT I+GYS++ + + ++SLF++M R+ PD TYP L
Sbjct: 70 LSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSL 129
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG----------------- 112
KA ++ + VA H + G D+F+ SLI +YG CG
Sbjct: 130 IKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNV 189
Query: 113 --------------DIVYAREVFDGMPTKMSVSWN------------------------- 133
D+V AR++FD MP K +VSWN
Sbjct: 190 VSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHR 249
Query: 134 ------SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+M+DGYAK G+M AR VFE PER+VV+WSALI GYV+ G EA+ IF EM
Sbjct: 250 NVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMC 309
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP-LQTSLIDMYAKCGAI 246
K +E +VS++ AC+ +G+L+ + + Y+ + + + +LIDM AKCG++
Sbjct: 310 SRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSM 369
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
A +F + K D++ + +M+ GL++HG +++ LF+ M G+TPD++ F +L+
Sbjct: 370 DRATKLFEEMPKR--DLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILT 427
Query: 307 ACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC+ GLV E Y+F+S+ +VP +HYACMVD L RAG++ EAYE + MP+EP A
Sbjct: 428 ACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHA 487
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
G+LL C H ++L E+V +L EL+P + G YV LSN+YA ++W + R M
Sbjct: 488 GAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKM 547
Query: 426 ETRGVKKYPGWSFV 439
RG++K PG S++
Sbjct: 548 RERGIRKIPGCSWI 561
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/362 (23%), Positives = 153/362 (42%), Gaps = 74/362 (20%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VHA+I + G D FI + + + S + Y VF+G+ + +V WN+ + GY++
Sbjct: 44 VHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYS 103
Query: 145 MNMARQVF------ELMPER---------------------------------NVVSWSA 165
+++ +F + +P++ +V ++
Sbjct: 104 VSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTS 163
Query: 166 LIDGYVKCGDYKEALVIFEEM--RDVGS-------------------------KANEVTL 198
LID Y KCG+ A +F+EM R+V S + N V+
Sbjct: 164 LIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSW 223
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
+++ G L R M M + + T++ID YAK G + A VF E
Sbjct: 224 NAIISGYVKCGDLRSARKMFDEMPHRNVVSF----TTMIDGYAKSGDMASARFVFE--EA 277
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
+ DV+ W+A+I G +G E++++F EM + PDE + L+SAC+ G + A
Sbjct: 278 PERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAK 337
Query: 319 YFFKSLGKRGM-VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
+ + K + V ++ A ++D ++ G + A + +MP S S++ G
Sbjct: 338 WVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYC-SMMQGLSI 396
Query: 378 HG 379
HG
Sbjct: 397 HG 398
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 166/433 (38%), Positives = 265/433 (61%), Gaps = 8/433 (1%)
Query: 14 DYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-----RAGVSPDHLTYPF 68
+Y+ + +++P F +N +IR Y +K +I+++ +ML + PD T+PF
Sbjct: 63 EYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPF 122
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+ K+ L +L VH + K G +S+ + NSL+ MY C + A +VF+ M +
Sbjct: 123 VVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERD 182
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
+VSWN+++ G+ + G+M AR +FE M ++ + SW+A++ GY + G Y +AL F M+
Sbjct: 183 AVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQM 242
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
VG + +E++LVSVL ACA LGAL+ G+ + Y G + + +LI+MYAKCG+I E
Sbjct: 243 VGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDE 302
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
+F + ++ DV+ W+ MI GLA HG E++ELF EMQ I P+ ITF+GLLSAC
Sbjct: 303 GRRLFD--QMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSAC 360
Query: 309 AHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
AH GL+ E +F+S+ + + P EHY C+V+ L +G++ +A E I +MP++P +++
Sbjct: 361 AHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAI 420
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
GSLL+ C +H L++A I + L+EL+P G YV LSN+YA +WD R+ M +
Sbjct: 421 WGSLLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRS 480
Query: 428 RGVKKYPGWSFVE 440
+ +KK PG S +E
Sbjct: 481 KSMKKTPGCSSIE 493
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 128/305 (41%), Gaps = 67/305 (21%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG + + + + + IF W ++ GY++ ++ F +M G+ PD ++ +
Sbjct: 196 LGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSV 255
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A +L EL +H K G+ ++ + N+LI MY CG I R +FD M +
Sbjct: 256 LPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDV 315
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+SW++M+ G A G + EA+ +F+EM+
Sbjct: 316 ISWSTMIVGLANHGRAH-------------------------------EAIELFQEMQKA 344
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ N +T V +L ACAH G L++G LRY ++K
Sbjct: 345 KIEPNIITFVGLLSACAHAGLLNEG---LRYF----------------------ESMKRD 379
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC- 308
+ GVE + ++ L + G + ++LEL +M + PD + LLS+C
Sbjct: 380 YNIEPGVEH-------YGCLVNLLGLSGRLDQALELIKKMP---MKPDSAIWGSLLSSCR 429
Query: 309 AHGGL 313
+H L
Sbjct: 430 SHSNL 434
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 181/468 (38%), Positives = 260/468 (55%), Gaps = 35/468 (7%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP-DHL 64
A S ++ Y+ V + +P F WNT+IR Y S+NP +S+SLF +M P D
Sbjct: 47 ACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSY 106
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
+ + +A GRL +H Q+ K G SDLF+ +LI MY GDI AR + D M
Sbjct: 107 SLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEM 166
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY-------- 176
V +N +L Y + GE+N+A +F+ MPER++VSW+ +I G+ GD
Sbjct: 167 AHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFD 226
Query: 177 -----------------------KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
EAL +F EM+ ++VT+VSVL AC +GAL
Sbjct: 227 RTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGM 286
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
G+M+ + + + L L TSL+DMYAKCG I +L VF+G+ + DV W+AMI GL
Sbjct: 287 GKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGM--NNRDVFAWSAMIMGL 344
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPK 332
A HGF + +L+ F++M I P+++TF+G+LSAC+H GLV E W +F S+ K + PK
Sbjct: 345 ANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPK 404
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV 392
EHY C+VD L RAG++ EA E I MP P A + +LL C + +++AE L+
Sbjct: 405 IEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLL 464
Query: 393 ELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
EL+P DG YV LSN+Y+ K WD+ R M+ ++K PG S +E
Sbjct: 465 ELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIE 512
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 170/432 (39%), Positives = 255/432 (59%), Gaps = 5/432 (1%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFLA 70
++D + KV + + W T++ GY+++ +++ LF +M+ G+ P+ +T
Sbjct: 193 SLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAV 252
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G++ + +H + + G + + N+L+ M+G CG + YAREVFDGM K
Sbjct: 253 SAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVY 312
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW SM++ YAKCG++ A Q+F+ MP RNVVSWS +I Y + +EA+ +F EM G
Sbjct: 313 SWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAG 372
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLR-YMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ TLVSVL ACA LG LD GR + Y++ + LT+ L +LIDM+AKCG + EA
Sbjct: 373 VDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEA 432
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+F E + +V+ WN MI A+HG +E++ LF +++ I PD+ITFLGLL++C+
Sbjct: 433 SKLFD--EMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCS 490
Query: 310 HGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E +FK + + P+ EHYACM+D L + G + EA+E MP+E +
Sbjct: 491 HSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGW 550
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C HG +++ V KLVEL P G YV +S +YA +WD+ + R M R
Sbjct: 551 GALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDR 610
Query: 429 GVKKYPGWSFVE 440
GVKK PG S +E
Sbjct: 611 GVKKNPGCSSIE 622
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 169/372 (45%), Gaps = 69/372 (18%)
Query: 26 PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA--- 82
P + T++RG+ +++ P +++ LF +++R + D T+ F KA+ A+ E
Sbjct: 99 PNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTP 158
Query: 83 ---VAVHAQIAKTGYESD-LFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
A+H K G+ + + + N+L+H Y
Sbjct: 159 SGGEAIHCAALKCGFVGESVLVGNALVHFY------------------------------ 188
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS-KANEVT 197
A ++ A +VF+ MPER+VVSW+ L+DGY + G EA +F M VG + N VT
Sbjct: 189 -ANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVT 247
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
LV+ + A +G L G M+ +Y+ + G++ ++ L +L+DM+ KCG ++ A VF G+E
Sbjct: 248 LVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGME 307
Query: 258 KH-----------------------------QSDVLIWNAMIGGLAMHGFVKESLELFTE 288
+ +V+ W+ MI + +E++ LF E
Sbjct: 308 VKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFRE 367
Query: 289 MQIVGITPDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347
M G+ P + T + +LSACA G L + W + + + ++D ++ G
Sbjct: 368 MIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCG 427
Query: 348 QVTEAYEFICQM 359
V EA + +M
Sbjct: 428 DVGEASKLFDEM 439
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A + G+++ + ++ + + W+ +I YS+ P +++ LF +M+ AGV P
Sbjct: 319 NAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDA 378
Query: 65 TYPFLAKASGRLAKRELAVAVHAQ-IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + A +L +L ++ I + + N+LI M+ CGD+ A ++FD
Sbjct: 379 TLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDE 438
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + VSWN+M+ +A G+ A ++FE + N+V
Sbjct: 439 MAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVP--------------------- 477
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAK 242
+++T + +L +C+H G + +GR + M + + + +ID+ K
Sbjct: 478 ----------DQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGK 527
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G ++EA V G+ ++D W A++ MHG V+
Sbjct: 528 VGLLEEAFEVARGM-PMEADEAGWGALLNACRMHGNVE 564
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 82/197 (41%), Gaps = 21/197 (10%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY-PFL 69
G++ + K+ ++ + WNT+I ++ ++I LF ++ + PD +T+ L
Sbjct: 427 GDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLL 486
Query: 70 AKAS-------GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
A S GR +E+ + + Y +I + G G + A EV
Sbjct: 487 ASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYA-------CMIDLLGKVGLLEEAFEVAR 539
Query: 123 GMPTKMS-VSWNSMLDGYAKCGEMNM----ARQVFELMPERNVVSWSALIDGYVKCGDYK 177
GMP + W ++L+ G + + A ++ EL P + + + + Y +
Sbjct: 540 GMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDSGI-YVLMSQIYASKNKWD 598
Query: 178 EALVIFEEMRDVGSKAN 194
+ ++ MRD G K N
Sbjct: 599 QVKMLRMTMRDRGVKKN 615
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 166/391 (42%), Positives = 241/391 (61%), Gaps = 6/391 (1%)
Query: 54 MLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113
MLR G PD+ ++PF+ KA RL+ +H+ K G D+F+ N+LI + SCG
Sbjct: 1 MLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGA 60
Query: 114 IVYAREVFDGMP--TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV 171
+ AR VFD +P + VSWNSM+ GY + +A +VF+ +P RN V W+++I GY
Sbjct: 61 VEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYA 120
Query: 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
+ +KEA+ +F EM+ G A+ T+ VL AC H GAL QGR + Y + + L
Sbjct: 121 QSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLN 180
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
+ +LI MY+KCG I++AL +FHG+ Q D+ W+A+I GLAM+G ++L LF++M++
Sbjct: 181 ARNALIGMYSKCGDIQKALEIFHGLT--QPDIFSWSAVISGLAMNGESDKALHLFSQMEM 238
Query: 292 VG-ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQV 349
+ I P+EITFLG+L AC HGG V + Y+F ++ + + P EHY CMVD L RA +
Sbjct: 239 ISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLL 298
Query: 350 TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409
EA +FI +P++P + SLL C NHG ++LAE K++ EL+P G V LSNVY
Sbjct: 299 VEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVY 358
Query: 410 AIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
A RW + + R+ M T+ +KK PG SFVE
Sbjct: 359 ASASRWGDVKRVRKDMATQRIKKQPGCSFVE 389
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 129/336 (38%), Gaps = 67/336 (19%)
Query: 5 SALSYLGNIDYSCKVLSHLSN--PRIFYWNTVIRGYSKS-----------KNPNK----- 46
SA S G ++ + V L + WN++I GY +S + P++
Sbjct: 53 SAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCW 112
Query: 47 ---------------SISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK 91
+I LF +M G + D T + A G +H +
Sbjct: 113 TSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCER 172
Query: 92 TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQV 151
E DL N+LI MY CGDI A E+F G+ SW++++ G A GE + A +
Sbjct: 173 NSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHL 232
Query: 152 FELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGAL 211
F M E + D+ + NE+T + VLCAC H G +
Sbjct: 233 FSQM----------------------------EMISDI--RPNEITFLGVLCACNHGGFV 262
Query: 212 DQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
D+G M L+ + ++D+ + + EA + Q DV+IW +++
Sbjct: 263 DKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPI-QPDVVIWRSLL 321
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
HG ++ L F QI + P LLS
Sbjct: 322 FACRNHGNIE--LAEFAAKQIEELEPRRCGARVLLS 355
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 173/432 (40%), Positives = 261/432 (60%), Gaps = 4/432 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + ++ +S + WN++I +++ P ++ LF+KM R V P+ +T +
Sbjct: 175 GDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVL 234
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + E V + I + G + DL + N+++ MY CG + A+++FD MP +
Sbjct: 235 SACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVF 294
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DV 189
SW MLDGYAK G+ + AR VF MP + + +W+ LI Y + G KEAL IF E++
Sbjct: 295 SWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSK 354
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+K +EVTLVS L ACA LGA+D G + Y+ +G+ L L +SL+DMYAKCG++++A
Sbjct: 355 IAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKA 414
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
L VF+ VE + DV +W+AMI GL MHG K +++LF EMQ + P+ +TF +L AC+
Sbjct: 415 LEVFYSVE--ERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACS 472
Query: 310 HGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E FF + G+VP+ +HYACMVD L RAG + EA E I +M P+AS+
Sbjct: 473 HAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVW 532
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C H ++L E+ +L++L+P + G V LSN+YA RW++ R+ M
Sbjct: 533 GALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDT 592
Query: 429 GVKKYPGWSFVE 440
+KK PG S +E
Sbjct: 593 ELKKEPGCSSIE 604
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 114/411 (27%), Positives = 190/411 (46%), Gaps = 63/411 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGV 59
+ + SALS +DY+ + + P ++ WNT+IR Y+ S +P +S +F+ +L +
Sbjct: 63 LFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCED 122
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T+PF+ KA+ L + AVH K + DL+I NSL+ YG+CGD+ A
Sbjct: 123 LPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAER 182
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
+F G+ K VSWNSM+ +A+ PE +A
Sbjct: 183 LFKGISCKDVVSWNSMISAFAQGN-----------CPE--------------------DA 211
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F +M N VT+V VL ACA L+ GR + Y+ KG+ + L L +++DM
Sbjct: 212 LELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDM 271
Query: 240 YAKCGAIKEALIVFHGVEKHQ-----------------------------SDVLIWNAMI 270
Y KCG++ +A +F + + ++ WN +I
Sbjct: 272 YTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLI 331
Query: 271 GGLAMHGFVKESLELFTEMQIVGIT-PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
+G KE+L +F E+Q+ I PDE+T + LSACA G + + + + G+
Sbjct: 332 SAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGI 391
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
V + +VD ++ G + +A E + E + +++ G HG+
Sbjct: 392 VLNCHLISSLVDMYAKCGSLEKALEVFYSVE-ERDVYVWSAMIAGLGMHGR 441
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 164/431 (38%), Positives = 257/431 (59%), Gaps = 4/431 (0%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS-PDHLTYPFLA 70
++DY+ ++ + +SNP +F +N++IR Y+ + I ++ ++LR PD T+PF+
Sbjct: 57 DMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMF 116
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
K+ L L VH + K G + N+LI MY D+V A +VFD M + +
Sbjct: 117 KSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVI 176
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS+L GYA+ G+M A+ +F LM ++ +VSW+A+I GY G Y EA+ F EM+ G
Sbjct: 177 SWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAG 236
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ +E++L+SVL +CA LG+L+ G+ + Y +G + +LI+MY+KCG I +A+
Sbjct: 237 IEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAI 296
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F +E DV+ W+ MI G A HG ++E F EMQ + P+ ITFLGLLSAC+H
Sbjct: 297 QLFGQMEG--KDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSH 354
Query: 311 GGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
G+ E +F + + + PK EHY C++D L+RAG++ A E MP++P + + G
Sbjct: 355 VGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWG 414
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL+ C G LD+A + LVEL+P+ G YV L+N+YA +W++ R+ +
Sbjct: 415 SLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNEN 474
Query: 430 VKKYPGWSFVE 440
+KK PG S +E
Sbjct: 475 MKKTPGGSLIE 485
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 87/192 (45%), Gaps = 9/192 (4%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G I + ++ + + W+T+I GY+ N + +I F +M RA V P+ +T+
Sbjct: 287 SKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFL 346
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISN--SLIHMYGSCGDIVYAREVFDGMP 125
L A + + + + + + Y+ + I + LI + G + A E+ MP
Sbjct: 347 GLLSACSHVGMWQEGLR-YFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMP 405
Query: 126 TKM-SVSWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
K S W S+L G +++A + EL PE ++ ++ L + Y G +++
Sbjct: 406 MKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPE-DMGNYVLLANIYADLGKWEDVS 464
Query: 181 VIFEEMRDVGSK 192
+ + +R+ K
Sbjct: 465 RLRKMIRNENMK 476
>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
Length = 625
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 171/376 (45%), Positives = 240/376 (63%), Gaps = 10/376 (2%)
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD--GMPTK 127
A RLA LA H Q K G + ++N L+ +Y + G + AR VFD G +
Sbjct: 126 AAVCDRLAAAGLA---HGQALKHGALAHPVVTNCLLKLYCALGMLSDARRVFDTSGATSL 182
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+ SWN+M+ GY KCG++ AR+VF MPER +VSWSA+ID ++ G++ EAL +F++M
Sbjct: 183 DAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMM 242
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT---LPLQTSLIDMYAKCG 244
G + + V L SVL ACAHLGAL++GR + R++ +GL + + L+T+L+DMY KCG
Sbjct: 243 GNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCG 302
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+ EA VF GV+ DV++WNAMIGGLAM+G K +LELF M +G P+E TF+ +
Sbjct: 303 CMDEAWWVFDGVQSQ--DVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVV 360
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
L AC H G V E F+S+ G+ P+ EHY C+ D L RAG + EA + MP+EP
Sbjct: 361 LCACTHTGRVDEGKEIFRSMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPH 420
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
AS G+L++ C+ H + + E VGKKL+EL+PD GRYV L N+YA+ W++A+ R+
Sbjct: 421 ASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVVLFNLYAVNGLWEDAKALRKM 480
Query: 425 METRGVKKYPGWSFVE 440
ME RG KK G SF+E
Sbjct: 481 MEERGAKKETGLSFIE 496
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 21/311 (6%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
F WNT++ GY K + + +FV+M G+ +++ + A R + A+ + Q
Sbjct: 185 FSWNTMVSGYGKCGDLEAAREVFVRMPERGL----VSWSAMIDACIRAGEFSEALRMFDQ 240
Query: 89 IAKTGYESDLFISNSLIHMYGSCGDIVYAREVF-----DGM---PTKMSVSWNSMLDGYA 140
+ G+ D + +S++ G + R V +G+ P + + +++D Y
Sbjct: 241 MMGNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLE-TALVDMYC 299
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
KCG M+ A VF+ + ++VV W+A+I G G K AL +F M D+G NE T V
Sbjct: 300 KCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVV 359
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF--HGVEK 258
VLCAC H G +D+G+ + R M D G+ L D+ + G ++EA V +E
Sbjct: 360 VLCACTHTGRVDEGKEIFRSMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEP 419
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE-ITFLGLLSACAHGGLVMEA 317
H S W A++ MH V + +++ + PD+ ++ L + A GL +A
Sbjct: 420 HASQ---WGALMSSCLMHNNVGVGERVGK--KLIELEPDDGGRYVVLFNLYAVNGLWEDA 474
Query: 318 WYFFKSLGKRG 328
K + +RG
Sbjct: 475 KALRKMMEERG 485
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 172/411 (41%), Positives = 249/411 (60%), Gaps = 3/411 (0%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN++I GY + +++ L+ KM V PD +T + AS +L L +H I
Sbjct: 224 WNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIE 283
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ G + ++N+L+ MY C +I A+ +F+ M K VSW +M+ GYAK G + A +
Sbjct: 284 EMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVR 343
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F MPE++VV W+ALI G+V+ KEAL +F EM+ +++T+V+ L AC+ LGA
Sbjct: 344 LFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGA 403
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
LD G M Y+ L++ + L T+L+DMYAKCG IK+A+ VF + S L W A+I
Sbjct: 404 LDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNS--LTWTAII 461
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW-YFFKSLGKRGM 329
GLA+HG ++ F+EM +G+ PDEITF+G+LSAC HGGLV + YF++ K G+
Sbjct: 462 CGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGI 521
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
PK +HY+C+VD L RAG + EA E I MP EP A + G+L G HG + + E
Sbjct: 522 SPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAAS 581
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
KL+EL P G YV L+N+Y W++AR R+ ME RGV+K PG S +E
Sbjct: 582 KLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIE 632
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 204/408 (50%), Gaps = 65/408 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++F A+S N+DY K+L++ +N F WN IRGY +S+NP ++ L+ MLR G +
Sbjct: 92 LVAFCAISEWRNLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSA 151
Query: 61 -PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
PD+ TYP L K + A + + + G++SDLF+ N++IH+ SCG+++
Sbjct: 152 IPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELL---- 207
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
AR++F+ R++VSW+++I+GYV+CG EA
Sbjct: 208 ---------------------------AARKLFDESCVRDLVSWNSIINGYVRCGLADEA 240
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
++ +M ++ +EVT++ V+ A A L L GR + + + + GL+LT+PL +L+DM
Sbjct: 241 FDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDM 300
Query: 240 YAKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAMI 270
Y KC I+ A I+F + K + DV++WNA+I
Sbjct: 301 YIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALI 360
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
GG KE+L LF EMQ + PD+IT + LSAC+ G + + + K +
Sbjct: 361 GGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLT 420
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMP----LEPTASMLGSLLTG 374
+VD ++ G + +A + +MP L TA + G L G
Sbjct: 421 MNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHG 468
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 127/271 (46%), Gaps = 33/271 (12%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
G ++ + ++ + + + WN +I G+ ++K ++++LF +M + V+PD +T
Sbjct: 335 FGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNC 394
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A +L ++ + +H + K ++ + +L+ MY CG+I A +VF+ MP + S
Sbjct: 395 LSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNS 454
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
++W +A+I G G A+ F EM +
Sbjct: 455 LTW-------------------------------TAIICGLALHGQPHAAISYFSEMISI 483
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKE 248
G +E+T + VL AC H G +DQGR M K G+S L + L+D+ + G ++E
Sbjct: 484 GLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEE 543
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
A + + + D ++W A+ G +HG V
Sbjct: 544 AEELIRSM-PFEPDAVVWGALFFGSRIHGNV 573
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 8/153 (5%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GNI + +V + W +I G + P+ +IS F +M+ G+ PD +T+ +
Sbjct: 437 GNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVL 496
Query: 71 KAS--GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A G L + + +K G L + L+ + G G + A E+ MP +
Sbjct: 497 SACCHGGLVDQGRDY-FYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEP 555
Query: 129 -SVSWNSMLDGYAKCGEMNM----ARQVFELMP 156
+V W ++ G G ++M A ++ EL P
Sbjct: 556 DAVVWGALFFGSRIHGNVHMGERAASKLLELDP 588
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 172/411 (41%), Positives = 249/411 (60%), Gaps = 3/411 (0%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN++I GY + +++ L+ KM V PD +T + AS +L L +H I
Sbjct: 224 WNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIE 283
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ G + ++N+L+ MY C +I A+ +F+ M K VSW +M+ GYAK G + A +
Sbjct: 284 EMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVR 343
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F MPE++VV W+ALI G+V+ KEAL +F EM+ +++T+V+ L AC+ LGA
Sbjct: 344 LFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGA 403
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
LD G M Y+ L++ + L T+L+DMYAKCG IK+A+ VF + S L W A+I
Sbjct: 404 LDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNS--LTWTAII 461
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW-YFFKSLGKRGM 329
GLA+HG ++ F+EM +G+ PDEITF+G+LSAC HGGLV + YF++ K G+
Sbjct: 462 CGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGI 521
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
PK +HY+C+VD L RAG + EA E I MP EP A + G+L G HG + + E
Sbjct: 522 SPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAAS 581
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
KL+EL P G YV L+N+Y W++AR R+ ME RGV+K PG S +E
Sbjct: 582 KLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIE 632
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 125/408 (30%), Positives = 204/408 (50%), Gaps = 65/408 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++F A+S N+DY K+L++ +N +F WN IRGY +S+NP ++ L+ MLR G +
Sbjct: 92 LVAFCAISEWRNLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSA 151
Query: 61 -PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
PD+ TYP L K + A + + + G++SDLF+ N++IH+ SCG
Sbjct: 152 IPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCG------- 204
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
E+ AR++F+ R++VSW+++I+GYV+CG EA
Sbjct: 205 ------------------------ELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEA 240
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
++ +M ++ +EVT++ V+ A A L L GR + + + + GL+LT+PL +L+DM
Sbjct: 241 FDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDM 300
Query: 240 YAKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAMI 270
Y KC I+ A I+F + K + DV++WNA+I
Sbjct: 301 YIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALI 360
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
GG KE+L LF EMQ + PD+IT + LSAC+ G + + + K +
Sbjct: 361 GGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLT 420
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMP----LEPTASMLGSLLTG 374
+VD ++ G + +A + +MP L TA + G L G
Sbjct: 421 MNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHG 468
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 127/271 (46%), Gaps = 33/271 (12%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
G ++ + ++ + + + WN +I G+ ++K ++++LF +M + V+PD +T
Sbjct: 335 FGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNC 394
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A +L ++ + +H + K ++ + +L+ MY CG+I A +VF+ MP + S
Sbjct: 395 LSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNS 454
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
++W +A+I G G A+ F EM +
Sbjct: 455 LTW-------------------------------TAIICGLALHGQPHAAISYFSEMISI 483
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKE 248
G +E+T + VL AC H G +DQGR M K G+S L + L+D+ + G ++E
Sbjct: 484 GLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEE 543
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
A + + + D ++W A+ G +HG V
Sbjct: 544 AEELIRSM-PFEPDAVVWGALFFGSRIHGNV 573
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 8/153 (5%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GNI + +V + W +I G + P+ +IS F +M+ G+ PD +T+ +
Sbjct: 437 GNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVL 496
Query: 71 KAS--GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A G L + + +K G L + L+ + G G + A E+ MP +
Sbjct: 497 SACCHGGLVDQGRDY-FYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEP 555
Query: 129 -SVSWNSMLDGYAKCGEMNM----ARQVFELMP 156
+V W ++ G G ++M A ++ EL P
Sbjct: 556 DAVVWGALFFGSRIHGNVHMGERAASKLLELDP 588
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 166/382 (43%), Positives = 244/382 (63%), Gaps = 3/382 (0%)
Query: 59 VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
V PD T F+ KA +L+ +H K G+ S+LF+ N ++++YG CG++ A
Sbjct: 6 VLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAM 65
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
+F+ MP + +V+WN ++ AK G+++ A F MP +NV SW+++I G+V+CG E
Sbjct: 66 LLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNE 125
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
A+ +F ++ D + NEVT+VSVL ACA LG LD GR++ Y G + + +LID
Sbjct: 126 AIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLID 185
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MY KCG ++ A VF+ +E + V+ W+AMI GLAMHG +E+L LF+EM +G+ P+
Sbjct: 186 MYVKCGCLENARRVFYEME--ERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNG 243
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
+TF+GLL AC+H GL+ E FF S+ G++P+ EHY C+VD SRAG + EA+EFI
Sbjct: 244 VTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFIL 303
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
MP++P + G+LL GC H +DLAE K L EL P +DG YV +SN+YA +RW++
Sbjct: 304 SMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWED 363
Query: 418 ARTTREAMETRGVKKYPGWSFV 439
A R+ M+ RGVKK GWS +
Sbjct: 364 AARVRKLMKDRGVKKTSGWSSI 385
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 140/293 (47%), Gaps = 36/293 (12%)
Query: 2 LSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP 61
+ + L+ G+ID + + N + W ++I G+ + PN++I LF+K+ V P
Sbjct: 81 IVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRP 140
Query: 62 DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121
+ +T + A L +L VH K+G++ ++ + N+LI MY CG + AR VF
Sbjct: 141 NEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVF 200
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
M + VSW++M+ G A G+ +EAL
Sbjct: 201 YEMEERTVVSWSAMIAGLAMHGQA-------------------------------EEALC 229
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMY 240
+F EM +G K N VT + +L AC+H+G +D+GR M D G+ + ++D++
Sbjct: 230 LFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLF 289
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH---GFVKESLELFTEMQ 290
++ G ++EA + + V +W A++GG +H +E+++ +E+
Sbjct: 290 SRAGLLEEAHEFILSMPIKPNGV-VWGALLGGCKVHKNIDLAEEAIKHLSELD 341
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/187 (18%), Positives = 84/187 (44%), Gaps = 5/187 (2%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + +V + + W+ +I G + +++ LF +M++ GV P+ +T+ L
Sbjct: 191 GCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLL 250
Query: 71 KASGRLAKRELAVAVHAQI-AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A + + A + A G + ++ ++ G + A E MP K +
Sbjct: 251 HACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPN 310
Query: 130 -VSWNSMLDGYAKCGEMNMARQVFELMPERNVVS---WSALIDGYVKCGDYKEALVIFEE 185
V W ++L G +++A + + + E + ++ + + + Y + +++A + +
Sbjct: 311 GVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAARVRKL 370
Query: 186 MRDVGSK 192
M+D G K
Sbjct: 371 MKDRGVK 377
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 179/460 (38%), Positives = 264/460 (57%), Gaps = 35/460 (7%)
Query: 14 DYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS 73
+Y+ ++ + + P F +N +IRG S+S NP ++ISL+ +M R V D T+PF+ KA
Sbjct: 59 NYAHQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKAC 118
Query: 74 GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
RL AVH + + G+ S+ + N+L+ + CGD+ A +FD V+W+
Sbjct: 119 TRLFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWS 178
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVK--------------------- 172
S++ GYA+ G++ +AR++F MPER++VSW+ +I GYVK
Sbjct: 179 SLIAGYARRGDLKVARKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVS 238
Query: 173 ----------CGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI 222
CG K+AL +F EM G +EVTL+S+L ACA LG L+ G+ + ++
Sbjct: 239 WNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVM 298
Query: 223 DKGL-SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
+ + L+ L +LIDMYAKCG IKE+L VF + DV+ WN++I G+A+HG KE
Sbjct: 299 EISMGKLSTLLGNALIDMYAKCGNIKESLDVFWSIT--DKDVISWNSVIVGMALHGHGKE 356
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMV 340
SL LF MQ I P+EITF+G+L AC+H G + E + +F + + P H CMV
Sbjct: 357 SLSLFKMMQRTKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMV 416
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400
D L RAG + EA +FI M +EP A + +LL C HG ++LA++ +KL ++ DH G
Sbjct: 417 DMLGRAGLLKEAAKFIDSMKIEPNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKDHSG 476
Query: 401 RYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
YV +SN+YA WD A R+ M+ GV K G SFVE
Sbjct: 477 DYVLMSNLYASRGEWDGAEKVRKLMDDSGVTKIRGSSFVE 516
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 122/303 (40%), Gaps = 65/303 (21%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKN--------------------------- 43
G++ + K+ + + + WN +I GY K
Sbjct: 188 GDLKVARKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYV 247
Query: 44 ----PNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGY-ESDL 98
+++ LF +M RAGV PD +T L A L E VHA++ + +
Sbjct: 248 VCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLST 307
Query: 99 FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
+ N+LI MY CG+I + +VF + K +SWNS++ G A G
Sbjct: 308 LLGNALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGH-------------- 353
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
KE+L +F+ M+ NE+T V VL AC+H G +D+G
Sbjct: 354 -----------------GKESLSLFKMMQRTKICPNEITFVGVLVACSHAGEIDEGYKYF 396
Query: 219 RYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
M + + + ++DM + G +KEA F K + + +IW ++ +HG
Sbjct: 397 DLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEA-AKFIDSMKIEPNAIIWRTLLAACKVHG 455
Query: 278 FVK 280
V+
Sbjct: 456 DVE 458
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 24/156 (15%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GNI S V +++ + WN+VI G + + +S+SLF M R + P+ +T+ +
Sbjct: 321 GNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGV- 379
Query: 71 KASGRLAKRELAVAVHAQIAKTGY------------ESDLFISNSLIHMYGSCGDIVYAR 118
L HA GY E ++ ++ M G G + A
Sbjct: 380 ----------LVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAA 429
Query: 119 EVFDGMPTK-MSVSWNSMLDGYAKCGEMNMARQVFE 153
+ D M + ++ W ++L G++ +A+ E
Sbjct: 430 KFIDSMKIEPNAIIWRTLLAACKVHGDVELAKVANE 465
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 168/431 (38%), Positives = 260/431 (60%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I + +V +S + WN++I GYSK +++ +F +M G+ PD T L
Sbjct: 183 GLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLL 242
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
S + +L VH + TG E D ++N+L+ MY CG++ A+ VFD M K V
Sbjct: 243 SVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVV 302
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW M++ YA G ++ A + F MP +NVVSW+++I +V+ G Y EA+ +F M D G
Sbjct: 303 SWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSG 362
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
AN+ TLV++L +C+H+G L G+ Y+ D ++L+ L ++IDMYAKCGA++ A+
Sbjct: 363 VMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAM 422
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF G+ + + + WN +IG LA+HG+ KE++E+F +MQ G+ PDEITF GLLSAC+H
Sbjct: 423 DVFFGMP--EKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSH 480
Query: 311 GGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV ++F+ + G+ P EHYACMVD L R G + EA I +MP++P +
Sbjct: 481 SGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWS 540
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C +G L + + + K+L+EL + G YV LSN+Y+ +RWD+ + + ++ G
Sbjct: 541 ALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNG 600
Query: 430 VKKYPGWSFVE 440
+KK SF+E
Sbjct: 601 IKKCRAISFIE 611
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/366 (28%), Positives = 179/366 (48%), Gaps = 40/366 (10%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
L ++ Y+ K+ + P F +N +I+GYS S +P KS+ L+ +M+ G+ P+ T PF+
Sbjct: 81 LRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFV 140
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA + L V VHAQ K G S + N+++++Y +CG I AR VFD + +
Sbjct: 141 LKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTL 200
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSWNSM++GY+K G +EA+++F EM++V
Sbjct: 201 VSWNSMINGYSKMGR-------------------------------SEEAVLMFREMQEV 229
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G + + TLV +L G D GR + +M+ G+ + + +L+DMYAKCG +K A
Sbjct: 230 GLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCA 289
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF + DV+ W MI A HG + +LE F +M + +++ ++
Sbjct: 290 KSVFD--QMLDKDVVSWTCMINAYANHGLIDCALEFFNQMP----GKNVVSWNSIIWCHV 343
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVT---EAYEFICQMPLEPTAS 366
GL EA F + G++ ++ + S G + +A+ +I + +A+
Sbjct: 344 QEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSAT 403
Query: 367 MLGSLL 372
+ +++
Sbjct: 404 LCNAII 409
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 174/433 (40%), Positives = 253/433 (58%), Gaps = 3/433 (0%)
Query: 9 YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPF 68
Y G + Y+ KV + + + WN++I GYS+ + + LF M A V+ D +T
Sbjct: 204 YFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVK 263
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+ A L + + ++ I + D+++ NSLI MYG G + AR VFD M K
Sbjct: 264 VILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKN 323
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
VSWN+ML GYA G++ A+++F MP RNV+SW+ +I G + +AL +F+EM D
Sbjct: 324 IVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMD 383
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
K +E+T+ SVL AC+HLG LD G+ + YM + + + +LIDMY KCG + +
Sbjct: 384 ANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDK 443
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
AL VFH ++K D + W +MI GLA++GFV ELF++M G+ P +F+G+L AC
Sbjct: 444 ALEVFHDMKK--KDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLAC 501
Query: 309 AHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
H GLV + +F+S+ G+ P+ +HY C+VD LSR+G++ AYEFI QMP+ P +
Sbjct: 502 THAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQMPVVPDVVL 561
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
LL+ C H L LAEI KL+EL P + G YV LSN YA RWD+A R+ M
Sbjct: 562 WRILLSACKLHRNLVLAEIATSKLLELDPSNSGNYVLLSNTYAGSDRWDDASRMRDLMVV 621
Query: 428 RGVKKYPGWSFVE 440
V+K WS +E
Sbjct: 622 GDVQKPSSWSSIE 634
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 124/420 (29%), Positives = 198/420 (47%), Gaps = 73/420 (17%)
Query: 22 HLSNPRIFYWNTVIRGYSKSKNPNKSISLFVK-MLRAGVSPDHLTYPFLAKASGRLAKRE 80
+ P + +N +IRG S+S+NPN++I ++ M G+ D+LT+ +L KA R+
Sbjct: 115 QIGQPTLLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVL 174
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
H Q+ K G+ S LFI NSLI MYG G++ YA++VFD M + VSWNS++ GY+
Sbjct: 175 HGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYS 234
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
+C +F LM E NV A+ VT+V
Sbjct: 235 QCNRFKEVLDLFNLMREANVT-------------------------------ADSVTMVK 263
Query: 201 VLCACAHL---GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
V+ AC++L G +D M++Y+ DK + + + L SLIDMY + G + A VF ++
Sbjct: 264 VILACSYLCEDGVVDS---MVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQ 320
Query: 258 KHQ-----------------------------SDVLIWNAMIGGLAMHGFVKESLELFTE 288
+ +V+ W MI G A ++L+LF E
Sbjct: 321 EKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQE 380
Query: 289 MQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYA--CMVDALSRA 346
M + PDEIT +LSAC+H GL+ + + + + KS+ Y ++D +
Sbjct: 381 MMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDI--KSDVYVGNALIDMYCKC 438
Query: 347 GQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE-LQPDHDGRYVGL 405
G V +A E M + + S +L +N ++ E+ + L + LQP H G ++G+
Sbjct: 439 GVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTH-GSFIGI 497
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 187/500 (37%), Positives = 278/500 (55%), Gaps = 66/500 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S +S N++Y+ V + + P F NT+++ Y++S P +++ + +M R G+ D+
Sbjct: 52 SVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNY 111
Query: 65 TYPFLAKASGRL-------------AKRELA---------VAVHAQIAKTGY-------- 94
TYPF+ KA G + KR ++++ + +TG+
Sbjct: 112 TYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGF 171
Query: 95 -ESDLFISNSLIHMYGSCG---------------DIV-----------------YAREVF 121
E DL NS++ Y CG D+V AR F
Sbjct: 172 SEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFF 231
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
D MPT+ VSWNSM+DGYAK GEM +AR++F+ M ++NV+SWS +IDGY + D KEAL
Sbjct: 232 DSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALN 291
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+F +M G K + V++V + AC+ LGALDQGR + YM + L + +QT+L+DMY
Sbjct: 292 LFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYL 351
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
KCG+ EA +F+ + + +V+ WN MI GL M+GF KE+LE FT+M++ I D++ F
Sbjct: 352 KCGSRDEARRIFNSMPER--NVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLF 409
Query: 302 LGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
LG+L AC+H LV E + F + G + PK EHY C+VD L RAGQ+ + I MP
Sbjct: 410 LGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMP 469
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
++P A++ GSLL C H + LAEIV ++L EL+ D G YV +SN+YA W+
Sbjct: 470 MKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLR 529
Query: 421 TREAMETRGVKKYPGWSFVE 440
R+ M+ R +KK G S +E
Sbjct: 530 IRKLMKERKMKKDIGRSVIE 549
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 113/277 (40%), Gaps = 39/277 (14%)
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+ +HAQ+ T SD F ++ L+ D V ++ +
Sbjct: 28 LQIHAQLITTNLISDTFAASRLL-------DSVVSKTL---------------------- 58
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
+N A VF + + N + ++ Y + + AL + EMR G + T VL
Sbjct: 59 -NVNYAELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVL 117
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
AC + L +G ++ + +G + + LI MY +CG A VF G + D
Sbjct: 118 KACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFS--EKD 175
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
++ WN+M+GG G ++ + +F EM + I G G V A FF
Sbjct: 176 LVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKM---GEVNRARVFFD 232
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
S+ R +V + M+D ++ G++ A E +M
Sbjct: 233 SMPTRDLVS----WNSMIDGYAKVGEMEVAREIFDKM 265
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 323 bits (829), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 169/436 (38%), Positives = 258/436 (59%), Gaps = 6/436 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSK---SKNPNKSISLFVKMLRAGVSPDHLTYP 67
G++D + V + NP +N++IR Y++ + + +M G+ D+ T P
Sbjct: 126 GDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLP 185
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
F+ K+ L++ + VH Q + G E D ++ SLI MY CG I AR++FD M +
Sbjct: 186 FVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVR 245
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
SWN+++ GY K GE+ +A +FE M RN+VSW+A+I GY + G ++AL +F+EM
Sbjct: 246 DMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEML 305
Query: 188 DVGS--KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
GS K N VT+VSVL ACA AL++GR + + GL L +QT+L MYAKC +
Sbjct: 306 QDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYS 365
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
+ EA F + ++ +++ WN MI A HG E++ +F M G+ PD +TF+GLL
Sbjct: 366 LVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLL 425
Query: 306 SACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
S C+H GL+ F +G + P+ EHYAC+VD L RAG++ EA E I QMP++
Sbjct: 426 SGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAG 485
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
S+ G+LL C +H L++AE+ ++L L+PD+ G YV LSN+YA W+E + R
Sbjct: 486 PSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRAL 545
Query: 425 METRGVKKYPGWSFVE 440
++ +G+KK PG S++E
Sbjct: 546 LKYQGMKKSPGCSWIE 561
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 121/302 (40%), Gaps = 62/302 (20%)
Query: 43 NPNKSISLFVKMLRAGV---SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
P S++L +++L + P +Y + + R +L HAQI G + + F
Sbjct: 54 TPKPSLNLQLRILLQPILQHFPHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAF 113
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
++ ++ MY S GD+ A VFD + S+ +NS++ Y + G E
Sbjct: 114 LAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLE------ 167
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
+ M +G + TL VL +CA L + GR +
Sbjct: 168 ----------------------AYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHG 205
Query: 220 YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH-----------------------GV 256
+ GL + SLIDMY KCG I +A +F GV
Sbjct: 206 QGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGV 265
Query: 257 EK------HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG--ITPDEITFLGLLSAC 308
+ +++ W AMI G +GF +++L LF EM G + P+ +T + +L AC
Sbjct: 266 AEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPAC 325
Query: 309 AH 310
A
Sbjct: 326 AQ 327
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 175/439 (39%), Positives = 250/439 (56%), Gaps = 4/439 (0%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
+ + LG+ + KV +H+ NP I W +I Y + P K+ S+F + +G+ PD
Sbjct: 44 LNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDS 103
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
A G VH + + SD + N+LI MY G I A VF
Sbjct: 104 FCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKT 163
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M K SW S+L+G+ KC ++ AR++F+ MP RN VSW+A+I GYV+ L +F
Sbjct: 164 MEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELF 223
Query: 184 EEMRDVGSK-ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
+EMR G +T+V+VL CA +GA D G + Y+ L L + + +L+DMYAK
Sbjct: 224 QEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAK 283
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
GA+ AL +F E + DV W MI GLA+HG +LE F++M G+ P+E+T L
Sbjct: 284 SGALVLALKIFQ--EMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLL 341
Query: 303 GLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+LSAC+H GLV+E F+ + + G+ PK +HY CMVD L RAG + EA E I MP+
Sbjct: 342 SVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPI 401
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
+P + + SLL+ C+ HG L LAE+ GK ++EL+PD DG Y+ L N+Y RW++A
Sbjct: 402 KPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKA 461
Query: 422 REAMETRGVKKYPGWSFVE 440
R+AM R VKK PG S+VE
Sbjct: 462 RKAMRDRRVKKKPGCSWVE 480
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 111/276 (40%), Gaps = 31/276 (11%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
+L+ Y + G A++VF + ++VSW+ LI Y+ +A IF + G + +
Sbjct: 43 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 102
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
+V + AC H L GR++ + L + +LIDMY++ GAI+ A VF
Sbjct: 103 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 162
Query: 255 GVEKHQ-----------------------------SDVLIWNAMIGGLAMHGFVKESLEL 285
+E + + W AMI G LEL
Sbjct: 163 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLEL 222
Query: 286 FTEMQIVGIT-PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS 344
F EM+ G P IT + +LS CA G + K + ++D +
Sbjct: 223 FQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYA 282
Query: 345 RAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
++G + A + +MP S ++++G HGK
Sbjct: 283 KSGALVLALKIFQEMPKRDVFSWT-TMISGLALHGK 317
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 169/443 (38%), Positives = 262/443 (59%), Gaps = 5/443 (1%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
M++F A S G+ID S V + + P +N++IR Y++ ++++ + M G +
Sbjct: 111 MVAFYASS--GDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFT 168
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
D+ T+PF+ K+S L + VH I + G + DL+++ SLI +YG CG+I A +V
Sbjct: 169 GDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKV 228
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD M + SWN++L GY K G ++ A +FE MP RN+VSW+ +I GY + G ++AL
Sbjct: 229 FDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQAL 288
Query: 181 VIFEEM--RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
+F+EM D G + N VT++SVL ACA L L++GR + GL+ + +L
Sbjct: 289 SLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTA 348
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MYAKCG++ +A F + +++ +++ WN MI A +G +++ F EM GI PD+
Sbjct: 349 MYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDD 408
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
ITF GLLS C+H GLV +F + + P+ EHYAC+ D L RAG++ EA + +
Sbjct: 409 ITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVG 468
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
+MP+ S+ GSLL C H L++AE +KL L+P++ G YV LSN+YA RW E
Sbjct: 469 EMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQE 528
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
R ++++G KK PG S++E
Sbjct: 529 VDKLRAIVKSQGTKKSPGCSWIE 551
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 138/329 (41%), Gaps = 48/329 (14%)
Query: 51 FVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGS 110
++ L A P L+Y + + L +L VHA + G + + + ++ Y S
Sbjct: 58 LLQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYAS 117
Query: 111 CGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGY 170
GDI + VF+G+ S+ +NSM+ YA+ G ER V ++ +
Sbjct: 118 SGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYG-----------FAERTVATYFS----- 161
Query: 171 VKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTL 230
M G + T VL + L ++ G+ + ++ GL L
Sbjct: 162 ---------------MHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDL 206
Query: 231 PLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ 290
+ TSLI +Y KCG I +A VF + DV WNA++ G G + +L +F M
Sbjct: 207 YVATSLIILYGKCGEINDAGKVFDNMTIR--DVSSWNALLAGYTKSGCIDAALAIFERMP 264
Query: 291 IVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPK-----SEHYAC-MVDA 342
I +++ ++S + GL +A F + K G+ P S AC +
Sbjct: 265 WRNI----VSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLST 320
Query: 343 LSRAGQVTEAYEFICQMPLEPTASMLGSL 371
L R Q+ +E C+M L AS+L +L
Sbjct: 321 LERGRQI---HELACRMGLNSNASVLIAL 346
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 174/473 (36%), Positives = 271/473 (57%), Gaps = 40/473 (8%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
++LS G + Y+ K+ + P + N V+RG ++S P K++SL+ +M + GVSPD
Sbjct: 20 ASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRY 79
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T+ F+ KA +L R A H ++ + G+ + ++ N+LI + +CGD+ A E+FD
Sbjct: 80 TFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDS 139
Query: 125 PTKMSVSWNSMLDGYA-------------------------------KCGEMNMARQVFE 153
V+W+SM GYA KC EM+ AR++F+
Sbjct: 140 AKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFD 199
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
E++VV+W+A+I GYV CG KEAL IF+EMRD G + VT++S+L ACA LG L+
Sbjct: 200 RFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLET 259
Query: 214 GRMMLRYMIDKG-----LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
G+ + Y+++ + + P+ +LIDMYAKCG+I A+ VF GV+ D+ WN
Sbjct: 260 GKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVK--DRDLSTWNT 317
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR- 327
+I GLA+H + S+E+F EMQ + + P+E+TF+G++ AC+H G V E +F +
Sbjct: 318 LIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMY 376
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ P +HY CMVD L RAGQ+ EA+ F+ M +EP A + +LL C +G ++L +
Sbjct: 377 NIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYA 436
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+KL+ ++ D G YV LSN+YA +WD + R+ + VKK G S +E
Sbjct: 437 NEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIE 489
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 174/473 (36%), Positives = 271/473 (57%), Gaps = 40/473 (8%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
++LS G + Y+ K+ + P + N V+RG ++S P K++SL+ +M + GVSPD
Sbjct: 54 ASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRY 113
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T+ F+ KA +L R A H ++ + G+ + ++ N+LI + +CGD+ A E+FD
Sbjct: 114 TFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDS 173
Query: 125 PTKMSVSWNSMLDGYA-------------------------------KCGEMNMARQVFE 153
V+W+SM GYA KC EM+ AR++F+
Sbjct: 174 AKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFD 233
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
E++VV+W+A+I GYV CG KEAL IF+EMRD G + VT++S+L ACA LG L+
Sbjct: 234 RFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLET 293
Query: 214 GRMMLRYMIDKG-----LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
G+ + Y+++ + + P+ +LIDMYAKCG+I A+ VF GV+ D+ WN
Sbjct: 294 GKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVK--DRDLSTWNT 351
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR- 327
+I GLA+H + S+E+F EMQ + + P+E+TF+G++ AC+H G V E +F +
Sbjct: 352 LIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMY 410
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ P +HY CMVD L RAGQ+ EA+ F+ M +EP A + +LL C +G ++L +
Sbjct: 411 NIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYA 470
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+KL+ ++ D G YV LSN+YA +WD + R+ + VKK G S +E
Sbjct: 471 NEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIE 523
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 161/433 (37%), Positives = 259/433 (59%), Gaps = 3/433 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
L ++ Y+C + + P ++ +N I+ +S +P++ L+ +M G SP+ ++ FL
Sbjct: 29 LPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFL 88
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L +H+ K+G+ SD+F +L+ MY G + AR++FD MP +
Sbjct: 89 FPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDI 148
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD- 188
+WNS++ GYA+ G M A ++F MP RNV+SW+ALI GY + G Y +AL +F + +
Sbjct: 149 PTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENE 208
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G+K NEV++ SVL AC+ LGALD G+ + Y + G + ++++++A+CG I+E
Sbjct: 209 KGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEE 268
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A VF + + ++ WN MI GLA+HG ++L+L+ +M I + PD++TF+GLL AC
Sbjct: 269 AQQVFDEIGS-KRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLAC 327
Query: 309 AHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
HGG+V E F+S+ K + PK EHY C+VD L RAG++ EAY I MP+ P + +
Sbjct: 328 THGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVI 387
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
G+LL C HG ++L E+ + L +L+P + G YV LSN+YA+ W R+ M+
Sbjct: 388 WGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKG 447
Query: 428 RGVKKYPGWSFVE 440
+ K G+S++E
Sbjct: 448 GHITKRAGYSYIE 460
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 176/447 (39%), Positives = 270/447 (60%), Gaps = 19/447 (4%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGV 59
+L FSA+S ++DY+ K+ + P F +NT+IR S+S +P ++ +F++M+ V
Sbjct: 26 LLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSV 85
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI----- 114
P+ T+P + KA GR + VH K G +SD F+ ++++ MY SCG +
Sbjct: 86 EPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHR 145
Query: 115 VYAREVF----DGMPTKMS------VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWS 164
++ R VF DG+ K V WN M+DGY + GE+ +AR +F+ MP+R+VVSW+
Sbjct: 146 LFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWN 205
Query: 165 ALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK 224
+I GY + G +KEA+ +F EM+ N VTLVSVL A + LGAL+ G+ + Y +
Sbjct: 206 VMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRN 265
Query: 225 GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLE 284
+ + L ++LIDMYAKCG+I++AL VF G+ K +V+ W+ +I GLAMHG K++L+
Sbjct: 266 NIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKR--NVVTWSTIIAGLAMHGRAKDTLD 323
Query: 285 LFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDAL 343
F +M+ G+ P ++T++GLLSAC+H GLV E +FF + + G+ P+ EHY CMVD L
Sbjct: 324 HFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLL 383
Query: 344 SRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYV 403
RAG + E+ E I MP++P + +LL C HG +++ + V + L+EL P G YV
Sbjct: 384 GRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYV 443
Query: 404 GLSNVYAIFKRWDEARTTREAMETRGV 430
LSN+YA W+ R M+ V
Sbjct: 444 ALSNIYASLGNWEGVAKVRLMMKEMDV 470
>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
Length = 629
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/354 (47%), Positives = 230/354 (64%), Gaps = 6/354 (1%)
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREV-FDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
K G + ++NSL+ +Y S G I AR V + G VSWN+M+ GY K G++ AR
Sbjct: 106 KCGALAHPVVTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAR 165
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
+VF MPERN+VSWSA++D V+ G++ EAL +F+ M + + V LVSVL ACAHLG
Sbjct: 166 EVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLG 225
Query: 210 ALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
A+++GR + RY+ G L L+T+L+DMY KCG +++A VF GV H+ DV++W
Sbjct: 226 AVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGV--HRRDVVLW 283
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
NAMIGGLAM+G+ + +LELF M G P+E TF+ +L AC H G V E FKS+
Sbjct: 284 NAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD 343
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
G+ P+ EHY C+ D L RAG V EA + MP+EP AS G+L++ C H +++ E
Sbjct: 344 YGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGER 403
Query: 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
VGK+L+EL+P GRYV L N+YA+ RW+EART R+ ME RG KK G SF+E
Sbjct: 404 VGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIE 457
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 126/304 (41%), Gaps = 71/304 (23%)
Query: 10 LGNIDYSCKVL-SHLSNPRIFYWNTVIRGYSK-----------SKNPNKSIS-------- 49
LG ID + +VL S + + WNT++ GY K ++ P +++
Sbjct: 126 LGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDA 185
Query: 50 ------------LFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK---TGY 94
+F +M+R PD + + KA L E VH + G
Sbjct: 186 CVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGR 245
Query: 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
+L + +L+ MY CG + A +VFDG+ + V WN+M+ G A
Sbjct: 246 RGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLA-------------- 291
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQG 214
++GY + AL +F M G NE T ++VLCAC H G +D+G
Sbjct: 292 ------------MNGY-----GERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEG 334
Query: 215 RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK--EALIVFHGVEKHQSDVLIWNAMIGG 272
+ + + M D G+ L D+ + G ++ EAL++ +E H S W A++
Sbjct: 335 KRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQ---WGALMSS 391
Query: 273 LAMH 276
MH
Sbjct: 392 CQMH 395
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 6/187 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + +V + + WN +I G + + +++ LF +ML+ G P+ T+ +
Sbjct: 263 GCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVL 322
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + + V + G + L + G G++ A + MP +
Sbjct: 323 CACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHA 382
Query: 131 S-WNSMLDGYAKCGEMNMARQV----FELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
S W +++ ++N+ +V EL P + + L + Y G ++EA I +
Sbjct: 383 SQWGALMSSCQMHNDINVGERVGKRLIELEPY-DGGRYVVLFNLYAVNGRWEEARTIRQM 441
Query: 186 MRDVGSK 192
M D G+K
Sbjct: 442 MEDRGAK 448
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 161/433 (37%), Positives = 259/433 (59%), Gaps = 3/433 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
L ++ Y+C + + P ++ +N I+ +S +P++ L+ +M G SP+ ++ FL
Sbjct: 29 LPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFL 88
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L +H+ K+G+ SD+F +L+ MY G + AR++FD MP +
Sbjct: 89 FPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDI 148
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD- 188
+WNS++ GYA+ G M A ++F MP RNV+SW+ALI GY + G Y +AL +F + +
Sbjct: 149 PTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENE 208
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G+K NEV++ SVL AC+ LGALD G+ + Y + G + ++++++A+CG I+E
Sbjct: 209 KGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEE 268
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A VF + + ++ WN MI GLA+HG ++L+L+ +M I + PD++TF+GLL AC
Sbjct: 269 AQQVFDEIGS-KRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLAC 327
Query: 309 AHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
HGG+V E F+S+ + V PK EHY C+VD L RAG++ EAY I MP+ P + +
Sbjct: 328 THGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVI 387
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
G+LL C HG ++L E+ + L +L+P + G YV LSN+YA+ W R+ M+
Sbjct: 388 WGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKG 447
Query: 428 RGVKKYPGWSFVE 440
+ K G+S++E
Sbjct: 448 GHITKRAGYSYIE 460
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 161/434 (37%), Positives = 258/434 (59%), Gaps = 3/434 (0%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G + + V S + WN +I GY++SK ++S+ LF +M R V P +T
Sbjct: 165 SLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLV 224
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A +L + VH + E + N+LI MY +CGD+ A +FD M ++
Sbjct: 225 SVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSR 284
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+SW +++ G+ G++ +AR F+ MPER+ VSW+A+IDGY++ +KE L +F EM+
Sbjct: 285 DVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQ 344
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
K +E T+VS+L ACAHLGAL+ G + Y+ + + + +LIDMY CG ++
Sbjct: 345 AANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVE 404
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
+A+ +F+ + D + W A+I GLA++G+ +E+L++F++M ITPDE+T +G+L A
Sbjct: 405 KAIRIFNAMP--HRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCA 462
Query: 308 CAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C H G+V + FF + + G+ P HY CMVD L RAG + EA+E I MP++P +
Sbjct: 463 CTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSI 522
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ GSLL C H ++AE+ ++++EL+P++ YV L N+YA RW++ R+ M
Sbjct: 523 VWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMM 582
Query: 427 TRGVKKYPGWSFVE 440
RG+KK PG S +E
Sbjct: 583 DRGIKKTPGCSLIE 596
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/407 (29%), Positives = 186/407 (45%), Gaps = 64/407 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++F LG+++Y+ V + P F WN +I+GYS+ PN ++S++ +ML GV
Sbjct: 57 IIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVM 116
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD TYPFL K R + +H I K G+ S++F+ N+LIH+Y G++ AR V
Sbjct: 117 PDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGV 176
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD V+WN M+ GY N ++Q + E++
Sbjct: 177 FDRSSKGDVVTWNVMISGY------NRSKQ-------------------------FDESM 205
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F+EM + + +TLVSVL AC+ L L+ G+ + RY+ D + L+ +LIDMY
Sbjct: 206 KLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMY 265
Query: 241 AKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAMIG 271
A CG + AL +F ++ + D + W AMI
Sbjct: 266 AACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMID 325
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
G KE L LF EMQ I PDE T + +L+ACAH G + + + K +
Sbjct: 326 GYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKI 385
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMP----LEPTASMLGSLLTG 374
S ++D G V +A MP + TA + G + G
Sbjct: 386 DSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAING 432
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 164/426 (38%), Positives = 253/426 (59%), Gaps = 5/426 (1%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS-PDHLTYPFLAKASGRL 76
K+ +++ + W T++ GY++ P+++ +F +M+ AG P+ +T A A+G++
Sbjct: 187 KLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQI 246
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
L VH + ++G + + N+L+ M+G CG + A+E+FDGMP K SW SM+
Sbjct: 247 GLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMV 306
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
YAKCG++ A ++F+ +P RN VSWS ++ Y + +EA+ IF +M G + +
Sbjct: 307 SAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDA 366
Query: 197 TLVSVLCACAHLGALDQGRMML-RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
TLVSVL ACA LG LD GR + Y++ + LT+ L + IDM+AKCG + A +F
Sbjct: 367 TLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRN 426
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
+E +V+ WN MI A+HG +E+L LF + + +GI PDEIT++G+LSAC+H GLV
Sbjct: 427 ME--DKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVS 484
Query: 316 EAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
E Y FK + G+ P++EHYACM+D L + G + EA+E MP+ + G+LL
Sbjct: 485 EGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNA 544
Query: 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
C HG +++ + KLV L P G YV +S +YA +W + + R M RGVKK P
Sbjct: 545 CRMHGNVEIGKCAADKLVGLDPSDSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNP 604
Query: 435 GWSFVE 440
G S +E
Sbjct: 605 GCSSIE 610
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 159/344 (46%), Gaps = 65/344 (18%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSN-PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
+L+F ALS + ++ VL+ + P + T++RG+ ++ P +++LF ++LR +
Sbjct: 69 LLAFCALSDPPRLAHAAAVLAQCAEGPNAYMLATMMRGFLRAGKPAHALALFRRVLRDRL 128
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAR 118
D T F KA+ A A+H K G+ + + N+L+HMY S
Sbjct: 129 PADARTIVFAVKAA--TTSSSPAEAIHCVAFKRGFIGQSVLVGNALVHMYAS-------- 178
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
MS + AR++F+ M +R+VVSW+ L+DGY + G E
Sbjct: 179 --------SMS---------------LPDARKLFDEMADRDVVSWTTLVDGYARGGLPDE 215
Query: 179 ALVIFEEMRDVGSK-ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
A +F M G NEVTLV+ A +G L GRM+ + +++ G+ +++ L+ +L+
Sbjct: 216 AWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALV 275
Query: 238 DMYAKCGAIKEALIVFHGV-----------------------------EKHQSDVLIWNA 268
DM+ KCG + A +F G+ E + + W+
Sbjct: 276 DMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSC 335
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
M+ + +E++ +F +M G+ P + T + +LSACA G
Sbjct: 336 MVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLG 379
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 138/304 (45%), Gaps = 36/304 (11%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
SA + G+++ + K+ + N W+ ++ YS++ P +++ +F M+ AGV P
Sbjct: 307 SAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDA 366
Query: 65 TYPFLAKASGRLAKRELAVAVH-AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + A +L ++ ++ A I E + +SN+ I M+ CGD+ A +F
Sbjct: 367 TLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRN 426
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M K VSWN+M+ +A G+ +EAL +F
Sbjct: 427 MEDKNVVSWNTMIVAHALHGQ-------------------------------SEEALHLF 455
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAK 242
++ + +G +E+T + VL AC+H G + +GR + M I G+ +ID+ K
Sbjct: 456 QKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGK 515
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
G ++EA V + +D W A++ MHG V+ + ++VG+ P +
Sbjct: 516 VGLLEEAFEVARSMPV-GADEAGWGALLNACRMHGNVE--IGKCAADKLVGLDPSDSGIY 572
Query: 303 GLLS 306
L+S
Sbjct: 573 VLMS 576
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 175/435 (40%), Positives = 248/435 (57%), Gaps = 4/435 (0%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
+ LG+ + KV +H+ NP I W +I Y + P K+ S+F + +G+ PD
Sbjct: 299 TQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVV 358
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
A G VH + + SD + N+LI MY G I A VF M K
Sbjct: 359 GAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIK 418
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
SW S+L+G+ KC ++ AR++F+ MP RN VSW+A+I GYV+ L +F+EMR
Sbjct: 419 DVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMR 478
Query: 188 DVGSK-ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
G +T+V+VL CA +GA D G + Y+ L L + + +L+DMYAK GA+
Sbjct: 479 AEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGAL 538
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
AL +F + K DV W MI GLA+HG +LE F++M G P+E+T L +LS
Sbjct: 539 VLALKIFQEMPKR--DVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLS 596
Query: 307 ACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC+H GLV+E F+ + + G+ PK +HY CMVD L RAG + EA E I MP++P +
Sbjct: 597 ACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDS 656
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
+ SLL+ C+ HG L LAE+ GK ++EL+PD DG Y+ L N+Y RW++A R+AM
Sbjct: 657 VIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAM 716
Query: 426 ETRGVKKYPGWSFVE 440
R VKK PG S+VE
Sbjct: 717 RDRRVKKKPGCSWVE 731
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 111/276 (40%), Gaps = 31/276 (11%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
+L+ Y + G A++VF + ++VSW+ LI Y+ +A IF + G + +
Sbjct: 294 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 353
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
+V + AC H L GR++ + L + +LIDMY++ GAI+ A VF
Sbjct: 354 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 413
Query: 255 GVEKHQ-----------------------------SDVLIWNAMIGGLAMHGFVKESLEL 285
+E + + W AMI G LEL
Sbjct: 414 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLEL 473
Query: 286 FTEMQIVGIT-PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS 344
F EM+ G P IT + +LS CA G + K + ++D +
Sbjct: 474 FQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYA 533
Query: 345 RAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
++G + A + +MP S ++++G HGK
Sbjct: 534 KSGALVLALKIFQEMPKRDVFSW-TTMISGLALHGK 568
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 164/439 (37%), Positives = 264/439 (60%), Gaps = 8/439 (1%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-----RAGVSPD 62
++ G +Y+ + +++P F +N +IR Y +K +I+++ +ML + PD
Sbjct: 57 NHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPD 116
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
T+PF+ K+ L +L VH + K G +S+ + NSL+ MY C + A VF+
Sbjct: 117 KFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFE 176
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
M + +VSWN+++ G+ + G+M AR +FE M ++ + SW+A++ GY + G Y +AL
Sbjct: 177 EMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEF 236
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F M+ VG + +E++LVSVL CA LGAL+ G+ + Y G + + +LI+MYAK
Sbjct: 237 FRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAK 296
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG+I + +F ++ + DV+ W+ MI GLA HG +E++ELF EMQ I P ITF+
Sbjct: 297 CGSIDQGRRLFDQMK--ERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFV 354
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
GLL+ACAH GL+ E +F+S+ + + P EHY C+V+ L +G++ +A E + +MP
Sbjct: 355 GLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPR 414
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
+P + + GSLL+ C +HG L +A I + L+EL+P G YV LSN+YA +WD
Sbjct: 415 KPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRM 474
Query: 422 REAMETRGVKKYPGWSFVE 440
R+ M ++ +KK PG S +E
Sbjct: 475 RKLMRSKSMKKTPGCSSIE 493
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 195/502 (38%), Positives = 265/502 (52%), Gaps = 73/502 (14%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
GN +YS ++L P IF +NT+IRG + +SI ++ M + G+SPD T+PF+
Sbjct: 55 FGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFV 114
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA R+ EL V +H+ + K G E+D F+ SLI++Y CG I A +VFD +P K
Sbjct: 115 LKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNF 174
Query: 130 VSWNSMLDGY---AKCGE-MNMARQVFE--LMPE-------------------------- 157
SW + + GY KC E ++M R++ E L P+
Sbjct: 175 ASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEY 234
Query: 158 -------RNVVSWSALIDGYVKCGDY-------------------------------KEA 179
RNV +AL+D Y KCG+ KEA
Sbjct: 235 ITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEA 294
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F +M + G K + +V VLC+CA LGAL+ G + L T+LIDM
Sbjct: 295 LDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDM 354
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
YAKCG + A VF G+ K D ++WNA I GLAM G VK++L LF +M+ GI PD
Sbjct: 355 YAKCGRMDRAWEVFRGMRK--KDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRN 412
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
TF+GLL AC H GLV E +F S+ + P+ EHY CMVD L RAG + EA++ I
Sbjct: 413 TFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKS 472
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP+E A + G+LL GC H L E+V KKL+ L+P H G YV LSN+YA +W+EA
Sbjct: 473 MPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEA 532
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R M RGVKK PG+S++E
Sbjct: 533 AKIRSIMSERGVKKIPGYSWIE 554
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 176/442 (39%), Positives = 270/442 (61%), Gaps = 5/442 (1%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGV 59
+L+F A S LGN+DY+ V + NP +F WNTVIRG+S+S NP ++ LF+ ML + V
Sbjct: 62 ILAFCA-SPLGNMDYAYLVFLQMQNPNLFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQV 120
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P LTYP + KA +L +H +I K G + D FI N++++MY + G + AR
Sbjct: 121 EPQRLTYPSIFKAYSQLGLAHDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARR 180
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
+F+ VSWNSM+ G AKCGE++ +R++F+ MP +N +SW+++I GYV+ G +KEA
Sbjct: 181 IFNQEMEFDVVSWNSMILGLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEA 240
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F +M++ + +E T+VS+L A A +GAL QG + Y+ L L + T++IDM
Sbjct: 241 LKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDM 300
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y KCG+I AL VF + + WN+MI GLA++G KE++ +F ++ + PD I
Sbjct: 301 YCKCGSIGNALQVFEKIPCR--SLSSWNSMIFGLAVNGCEKEAILVFKMLESSSLKPDCI 358
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQ 358
+F+ +L+AC HG +V E FF + + P +HY MVD +SRAG + EA +FI
Sbjct: 359 SFMAVLTACNHGAMVDEGMEFFSRMKNTYRIEPSIKHYNLMVDMISRAGFLEEAEQFIKT 418
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP+E A + G LL+ C +G ++A+ +K+ EL P+ YV ++N++A + A
Sbjct: 419 MPIEKDAIIWGCLLSACRIYGNTEMAKRAAEKVNELDPEETMGYVLMANIHAWGNNFVGA 478
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R AM + V+K PG SF+E
Sbjct: 479 MEKRVAMRMKKVEKEPGGSFIE 500
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 167/438 (38%), Positives = 260/438 (59%), Gaps = 6/438 (1%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG--VSPDHL 64
S G ++Y+ K+ + WN V+ GY++ K +S LF++M + VSP+ +
Sbjct: 181 FSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSV 240
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + A +L ++ + K G E +L + N+LI M+ SCG++ AR VFD
Sbjct: 241 TLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDE 300
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M T+ +SW S++ G+A +++AR+ F+ MPER+ VSW+A+IDGY++ +KE L +F
Sbjct: 301 MKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLF 360
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
+M+ K +E T+VS+L ACAHLGAL+ G Y+ + + +LIDMY KC
Sbjct: 361 RDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKC 420
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G +++A +F+ ++K D W AMI GLA +G +E+L +F+ M +TPDEIT++G
Sbjct: 421 GNVEKAKKIFNEMQK--KDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIG 478
Query: 304 LLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
++ AC H GLV + +FF ++ + G+ P HY CMVD L RAG + EA E I MP++
Sbjct: 479 VMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVK 538
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P + + GSLL C H + LAE+ +++EL+P++ YV L N+YA K+W R
Sbjct: 539 PNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVR 598
Query: 423 EAMETRGVKKYPGWSFVE 440
+ M RG+KK PG S +E
Sbjct: 599 KMMMERGIKKIPGCSLME 616
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 112/430 (26%), Positives = 192/430 (44%), Gaps = 68/430 (15%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ Y+ KV + P +F WNT+I+GYS+ +SL+ ML + PD T+PFL
Sbjct: 83 GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142
Query: 71 KA-SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
K + +A + V ++ + +S+LF+ IH++ CG + YAR++FD
Sbjct: 143 KGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEV 202
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
V+WN +L GY + ++++F M ++ +C
Sbjct: 203 VTWNVVLSGYNRFKRYEESKRLFIEMEKK------------CEC---------------- 234
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL-SLTLPLQTSLIDMYAKCGAIKE 248
N VTLV +L AC+ L L G+ + I +G+ L L+ +LIDM+A CG +
Sbjct: 235 -VSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDA 293
Query: 249 ALIVFHGVEKH-----------------------------QSDVLIWNAMIGGLAMHGFV 279
A VF ++ + D + W AMI G
Sbjct: 294 ARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRF 353
Query: 280 KESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHYA- 337
KE L LF +MQ+ + PDE T + +L+ACAH G L + W K+ + +
Sbjct: 354 KEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWA--KTYIDKNKIKNDTFIGN 411
Query: 338 CMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQ 395
++D + G V +A + +M + + +++ G N+G + A + ++E +
Sbjct: 412 ALIDMYFKCGNVEKAKKIFNEMQKKDKFT-WTAMIVGLANNGHGEEALTMFSYMLEASVT 470
Query: 396 PDHDGRYVGL 405
PD + Y+G+
Sbjct: 471 PD-EITYIGV 479
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 172/431 (39%), Positives = 256/431 (59%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D + K+ + WN++I GY + ++++ + +M G+ PD +T +
Sbjct: 156 GDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVV 215
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ +L +L H I + G + + ++N+L+ MY CG++ AR++FD M K V
Sbjct: 216 SSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMV 275
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW +M+ GYA+ G ++MA ++F+ MP+++VV W+A+I GYV KEAL +F EM+ +
Sbjct: 276 SWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN 335
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+EVT+VS L AC+ LGALD G + Y+ LSL + L T+LIDMYAKCG I +A+
Sbjct: 336 INPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAI 395
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + S L W A+I GLA+HG ++ F+EM + PDE+TFLGLLSAC H
Sbjct: 396 QVFQELPGRNS--LTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCH 453
Query: 311 GGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GGLV E +F + K + PK +HY+CMVD L RAG + EA E I MP+E A + G
Sbjct: 454 GGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWG 513
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+L C HG + + E KL+++ P G YV L+N+Y + W EA R+ M RG
Sbjct: 514 ALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRG 573
Query: 430 VKKYPGWSFVE 440
V+K PG S +E
Sbjct: 574 VEKTPGCSSIE 584
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 125/390 (32%), Positives = 200/390 (51%), Gaps = 61/390 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GV 59
+++F A+S ++DY +L + NP F WN IRG+ S+NP +++ L+ ++L+ G
Sbjct: 44 LIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGT 103
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
PD+ TYP L KA RL+ + + + G++SD+F+SN++IH+ SCGD
Sbjct: 104 KPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGD------ 157
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
LDG AR++F+ R++VSW+++I+GYV+ G EA
Sbjct: 158 ----------------LDG---------ARKMFDKSCVRDLVSWNSMINGYVRRGWAYEA 192
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L + EM+ G K +EVT++ V+ +CA L LD GR Y+ + GL LT+PL +L+DM
Sbjct: 193 LNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDM 252
Query: 240 YAKCGAIKEALIVFHGV-----------------------------EKHQSDVLIWNAMI 270
Y KCG ++ A +F + E DV+ WNAMI
Sbjct: 253 YMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMI 312
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
GG KE+L LF EMQ + I PDE+T + LSAC+ G + + + K +
Sbjct: 313 GGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELS 372
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMP 360
++D ++ G++T+A + ++P
Sbjct: 373 LNVALGTALIDMYAKCGKITKAIQVFQELP 402
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 176/458 (38%), Positives = 261/458 (56%), Gaps = 35/458 (7%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y+ ++ + + P F WNT IRG S+S +P +++L+ +M V PD+ T+P + KA
Sbjct: 59 YAVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACT 118
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI-------------------- 114
+L VH ++ + G+ S++ + N+L+ + CGD+
Sbjct: 119 KLFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSA 178
Query: 115 -----------VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSW 163
AR++FD MP + VSWN M+ Y K GEM AR++F+ P ++VVSW
Sbjct: 179 LIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSW 238
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
+A++ GYV +EAL +F+EM +VG +EVT++S+L ACA LG + ++
Sbjct: 239 NAMVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSLLSACADLGDXGEKVHAKIMELN 298
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
KG L+ L +L+DMYAKCG I + + VF + D++ WN++IGGLA HG +ESL
Sbjct: 299 KG-KLSTLLGNALVDMYAKCGNIGKGVCVFWLIR--DKDMVSWNSVIGGLAFHGHAEESL 355
Query: 284 ELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA-WYFFKSLGKRGMVPKSEHYACMVDA 342
LF EMQ + PDEITF+G+L+AC+H G V E YF+ K + P H C+VD
Sbjct: 356 GLFREMQRTKVCPDEITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDM 415
Query: 343 LSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRY 402
L+RAG + EA++FI M +EP A + SLL C HG ++LA+ ++L+ ++ D G Y
Sbjct: 416 LARAGLLKEAFDFIASMKIEPNAIVWRSLLGACKVHGDVELAKRATEQLLRMRVDQSGDY 475
Query: 403 VGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
V LSNVYA WD A R+ M+ GV K G SFVE
Sbjct: 476 VLLSNVYASHGEWDGAENVRKLMDDNGVTKTRGSSFVE 513
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 106/422 (25%), Positives = 171/422 (40%), Gaps = 90/422 (21%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSK-----------SKNPNKSI----------- 48
G++ + K+ + + WN +I Y+K + P K +
Sbjct: 187 GDLSVARKLFDEMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYV 246
Query: 49 ---------SLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK--TGYESD 97
LF +M G PD +T L A L + VHA+I + G S
Sbjct: 247 LHNLNQEALELFDEMCEVGECPDEVTMLSLLSACADLG--DXGEKVHAKIMELNKGKLST 304
Query: 98 LFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE 157
L + N+L+ MY CG+I VF + K VSWNS++ G A F
Sbjct: 305 L-LGNALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLA-----------FH---- 348
Query: 158 RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMM 217
G +E+L +F EM+ +E+T V VL AC+H G +D+G
Sbjct: 349 ----------------GHAEESLGLFREMQRTKVCPDEITFVGVLAACSHTGNVDEGNRY 392
Query: 218 LRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
M +K + + ++DM A+ G +KEA F K + + ++W +++G +H
Sbjct: 393 FYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFD-FIASMKIEPNAIVWRSLLGACKVH 451
Query: 277 GFVKESLELFTEMQIVGITPDEITFLGLLSAC-AHGGLVMEAWYFFKSLGKRGMVPKSEH 335
G V E + TE Q++ + D+ LLS A G A K + G+
Sbjct: 452 GDV-ELAKRATE-QLLRMRVDQSGDYVLLSNVYASHGEWDGAENVRKLMDDNGVTK---- 505
Query: 336 YACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ 395
+R EAY +EP +LL C+ +G ++LA+ V ++L+ L+
Sbjct: 506 --------TRGSSFVEAYR------IEPNPVNGRTLLGACIVYGDVELAKRVNEELLRLR 551
Query: 396 PD 397
D
Sbjct: 552 RD 553
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 117/265 (44%), Gaps = 15/265 (5%)
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
SM+ A A Q+F +P+ + W+ I G + D A+ ++ +M K
Sbjct: 46 SMVGPAATTAVTQYAVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKP 105
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+ T VL AC L ++ G ++ + G + ++ +L+ +AKCG +K A +F
Sbjct: 106 DNFTFPLVLKACTKLFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIF 165
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313
+K DV+ W+A+I G A G + + +LF EM D +++ +++A G
Sbjct: 166 DDSDK--GDVVAWSALIAGYAQRGDLSVARKLFDEMP----KRDLVSWNVMITAYTKHGE 219
Query: 314 VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF---ICQMPLEPTASMLGS 370
+ A F + +V + MV EA E +C++ P + S
Sbjct: 220 MECARRLFDEAPMKDVVS----WNAMVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLS 275
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQ 395
LL+ C + G D E V K++EL
Sbjct: 276 LLSACADLG--DXGEKVHAKIMELN 298
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 167/354 (47%), Positives = 230/354 (64%), Gaps = 6/354 (1%)
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREV-FDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
K G + ++NSL+ +Y S G + AR V + G VSWN+M+ GY K G++ AR
Sbjct: 106 KCGALAHPVVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAR 165
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
+VF MPERN+VSWSA++D V+ G++ EAL +F+ M + + V LVSVL ACAHLG
Sbjct: 166 EVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLG 225
Query: 210 ALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
A+++GR + RY+ G L L+T+L+DMY KCG +++A VF GV H+ DV++W
Sbjct: 226 AVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGV--HRRDVVLW 283
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
NAMIGGLAM+G+ + +LELF M G P+E TF+ +L AC H G V E FKS+
Sbjct: 284 NAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD 343
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
G+ P+ EHY C+ D L RAG V EA + MP+EP AS G+L++ C H +++ E
Sbjct: 344 YGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGER 403
Query: 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
VGK+L+EL+P GRYV L N+YA+ RW+EART R+ ME RG KK G SF+E
Sbjct: 404 VGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIE 457
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 126/304 (41%), Gaps = 71/304 (23%)
Query: 10 LGNIDYSCKVL-SHLSNPRIFYWNTVIRGYSK-----------SKNPNKSIS-------- 49
LG +D + +VL S + + WNT++ GY K ++ P +++
Sbjct: 126 LGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDA 185
Query: 50 ------------LFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK---TGY 94
+F +M+R PD + + KA L E VH + G
Sbjct: 186 CVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGR 245
Query: 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
+L + +L+ MY CG + A +VFDG+ + V WN+M+ G A
Sbjct: 246 RGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLA-------------- 291
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQG 214
++GY + AL +F M G NE T ++VLCAC H G +D+G
Sbjct: 292 ------------MNGY-----GERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEG 334
Query: 215 RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK--EALIVFHGVEKHQSDVLIWNAMIGG 272
+ + + M D G+ L D+ + G ++ EAL++ +E H S W A++
Sbjct: 335 KRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQ---WGALMSS 391
Query: 273 LAMH 276
MH
Sbjct: 392 CQMH 395
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 6/187 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + +V + + WN +I G + + +++ LF +ML+ G P+ T+ +
Sbjct: 263 GCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVL 322
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + + V + G + L + G G++ A + MP +
Sbjct: 323 CACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHA 382
Query: 131 S-WNSMLDGYAKCGEMNMARQV----FELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
S W +++ ++N+ +V EL P + + L + Y G ++EA I +
Sbjct: 383 SQWGALMSSCQMHNDINVGERVGKRLIELEPY-DGGRYVVLFNLYAVNGRWEEARTIRQM 441
Query: 186 MRDVGSK 192
M D G+K
Sbjct: 442 MEDRGAK 448
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 179/476 (37%), Positives = 276/476 (57%), Gaps = 43/476 (9%)
Query: 1 MLSFSALSYL-GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR--- 56
+++F +LS + G +DY+ V S + +P F + +I+G+S + NP +S+ L+ +ML
Sbjct: 44 LIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLN 103
Query: 57 --AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114
+GV + P + KA G+L + VH Q+ KT D F+ NS++ MY G+I
Sbjct: 104 YSSGV---EFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEI 160
Query: 115 VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
AR VFD MP + VSWNSM+ GY K GE+ +A ++F+ MPER++VS +A+IDGY KCG
Sbjct: 161 ELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKCG 220
Query: 175 DYK-------------------------------EALVIFEEMRDVGSKANEVTLVSVLC 203
+ +AL +F EM +G + + +VSVL
Sbjct: 221 RCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLS 280
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLP-LQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
A A LG +++G+ + Y+ + L+ + ++LIDMY+KCG I+ A VF + H+ +
Sbjct: 281 AIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSIS-HRRN 339
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
+ WN+MI GLA+HG +E+L++F EM+ + I P+EITFLGLLS C+HGGLV E ++F+
Sbjct: 340 IGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFE 399
Query: 323 SLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
S+ ++ +VP+ +HY CM+D RAG++ +A I MP E ++L+ M HG +
Sbjct: 400 SMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHI 459
Query: 382 DLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
++ + + +EL PD YV LSN+YA RWD+ R M RGVKK G S
Sbjct: 460 EIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCS 515
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 250/413 (60%), Gaps = 38/413 (9%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSP-DHLTYPFLAKASGRLAKRELAVAVHAQI 89
WNT+IRGYS+S NP ++I L++ M+ G++P ++ T+PFL + RL+ E VH+ I
Sbjct: 2 WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61
Query: 90 AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
K G+ESDLF+ N+LIH+Y VF G +N+AR
Sbjct: 62 IKHGFESDLFVRNALIHLYS----------VF---------------------GNLNLAR 90
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
+F+ R++VS++ +I GY + + AL +F EM++ ++EVTLV+VL ACA LG
Sbjct: 91 TLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQN----SDEVTLVAVLSACARLG 146
Query: 210 ALDQGRMMLRYMIDKGL-SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
A D G+ + I+ G+ + L +++DMYAKCG+I AL +F V K+ ++N+
Sbjct: 147 AFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNS 206
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKR 327
MI GLA HG + ++ +F E+ G+ PDE+TF+G+L AC H GL+ E F+S+
Sbjct: 207 MIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAY 266
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
G+ P+ EHY CMVD L R G + EAY+ + +MP E + + +LL+ C HG + + EI
Sbjct: 267 GIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIA 326
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
G+KL+E++ H RYV LSN+ A +W+EAR R+ ME G++K PGWS++E
Sbjct: 327 GQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIE 379
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 125/277 (45%), Gaps = 40/277 (14%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S GN++ + + + +NT+I+GY++ P ++ LF +M + D +T
Sbjct: 81 SVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNS----DEVTLV 136
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFD--GM 124
+ A RL +L ++ Q + G + + ++ +++ MY CG I A E+F G
Sbjct: 137 AVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGK 196
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
K +NSM+ G A+ G G+ A+ +F
Sbjct: 197 NMKTGFVFNSMIAGLAQHG-----------------------------LGE--TAITVFR 225
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKC 243
E+ G K +EVT V VLCAC H G +++G+ + M + G+ + ++D+ +
Sbjct: 226 ELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRY 285
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G ++EA + + +++ +IW A++ HG VK
Sbjct: 286 GCLEEAYDLVQKM-PFEANSVIWRALLSACRTHGNVK 321
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 166/434 (38%), Positives = 255/434 (58%), Gaps = 3/434 (0%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G +D + V +F WN +I GY++ K +SI L V+M R VSP +T
Sbjct: 181 SLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLL 240
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A ++ ++L VH +++ E L + N+L++ Y +CG++ A +F M +
Sbjct: 241 LVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKAR 300
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+SW S++ GY + G + +AR F+ MP R+ +SW+ +IDGY++ G + E+L IF EM+
Sbjct: 301 DVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQ 360
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G +E T+VSVL ACAHLG+L+ G + Y+ + + + +LIDMY KCG +
Sbjct: 361 SAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSE 420
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
+A VFH ++ Q D W AM+ GLA +G +E++++F +MQ + I PD+IT+LG+LSA
Sbjct: 421 KAQKVFHDMD--QRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSA 478
Query: 308 CAHGGLVMEAWYFF-KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C H G+V +A FF K + P HY CMVD L RAG V EAYE + +MP+ P +
Sbjct: 479 CNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSI 538
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ G+LL H +AE+ KK++EL+PD+ Y L N+YA KRW + R R +
Sbjct: 539 VWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIV 598
Query: 427 TRGVKKYPGWSFVE 440
+KK PG+S +E
Sbjct: 599 DVAIKKTPGFSLIE 612
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 191/455 (41%), Gaps = 104/455 (22%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPF-- 68
G++ Y+ K+ + P + WN +I+G+SK + + L++ ML+ GV+PD T+PF
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 69 --LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
L + G LA +H + K G S+L++ N+L+ MY CG + AR VFD
Sbjct: 142 NGLKRDGGALA---CGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCK 198
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ SWN M+ GY + E Y+E++ + EM
Sbjct: 199 EDVFSWNLMISGYNRMKE-------------------------------YEESIELLVEM 227
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
VTL+ VL AC+ + D + + Y+ + +L L+ +L++ YA CG +
Sbjct: 228 ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEM 287
Query: 247 KEALIVFHGVEKHQ-----------------------------SDVLIWNAMIGGLAMHG 277
A+ +F ++ D + W MI G G
Sbjct: 288 DIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAG 347
Query: 278 FVKESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAW---YFFKSLGKRGMVPKS 333
ESLE+F EMQ G+ PDE T + +L+ACAH G L + W Y K+ K +V +
Sbjct: 348 CFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGN 407
Query: 334 E----HYAC-----------------------MVDALSRAGQVTEAYEFICQ---MPLEP 363
++ C MV L+ GQ EA + Q M ++P
Sbjct: 408 ALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQP 467
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398
+L+ C + G +D A K +++ DH
Sbjct: 468 DDITYLGVLSACNHSGMVDQAR---KFFAKMRSDH 499
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 137/333 (41%), Gaps = 66/333 (19%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKN-----------P--------- 44
+A + G +D + ++ + + W ++++GY + N P
Sbjct: 279 NAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTI 338
Query: 45 -----------NKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTG 93
N+S+ +F +M AG+ PD T + A L E+ + I K
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNK 398
Query: 94 YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFE 153
++D+ + N+LI MY CG A++VF M + +W +M+ G A G+
Sbjct: 399 IKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQG-------- 450
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
+EA+ +F +M+D+ + +++T + VL AC H G +DQ
Sbjct: 451 -----------------------QEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQ 487
Query: 214 GRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
R M D + +L ++DM + G +KEA + + + + + +W A++G
Sbjct: 488 ARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSI-VWGALLGA 546
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
+H E + +I+ + PD LL
Sbjct: 547 SRLHN--DEPMAELAAKKILELEPDNGAVYALL 577
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 320 bits (821), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 166/434 (38%), Positives = 255/434 (58%), Gaps = 3/434 (0%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G +D + V +F WN +I GY++ K +SI L V+M R VSP +T
Sbjct: 181 SLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLL 240
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A ++ ++L VH +++ E L + N+L++ Y +CG++ A +F M +
Sbjct: 241 LVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKAR 300
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+SW S++ GY + G + +AR F+ MP R+ +SW+ +IDGY++ G + E+L IF EM+
Sbjct: 301 DVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQ 360
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G +E T+VSVL ACAHLG+L+ G + Y+ + + + +LIDMY KCG +
Sbjct: 361 SAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSE 420
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
+A VFH ++ Q D W AM+ GLA +G +E++++F +MQ + I PD+IT+LG+LSA
Sbjct: 421 KAQKVFHDMD--QRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSA 478
Query: 308 CAHGGLVMEAWYFF-KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C H G+V +A FF K + P HY CMVD L RAG V EAYE + +MP+ P +
Sbjct: 479 CNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSI 538
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ G+LL H +AE+ KK++EL+PD+ Y L N+YA KRW + R R +
Sbjct: 539 VWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIV 598
Query: 427 TRGVKKYPGWSFVE 440
+KK PG+S +E
Sbjct: 599 DVAIKKTPGFSLIE 612
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 191/455 (41%), Gaps = 104/455 (22%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPF-- 68
G++ Y+ K+ + P + WN +I+G+SK + + L++ ML+ GV+PD T+PF
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 69 --LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
L + G LA +H + K G S+L++ N+L+ MY CG + AR VFD
Sbjct: 142 NGLKRDGGALA---CGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCK 198
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ SWN M+ GY + E Y+E++ + EM
Sbjct: 199 EDVFSWNLMISGYNRMKE-------------------------------YEESIELLVEM 227
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
VTL+ VL AC+ + D + + Y+ + +L L+ +L++ YA CG +
Sbjct: 228 ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEM 287
Query: 247 KEALIVFHGVEKHQ-----------------------------SDVLIWNAMIGGLAMHG 277
A+ +F ++ D + W MI G G
Sbjct: 288 DIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAG 347
Query: 278 FVKESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAW---YFFKSLGKRGMVPKS 333
ESLE+F EMQ G+ PDE T + +L+ACAH G L + W Y K+ K +V +
Sbjct: 348 CFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGN 407
Query: 334 E----HYAC-----------------------MVDALSRAGQVTEAYEFICQ---MPLEP 363
++ C MV L+ GQ EA + Q M ++P
Sbjct: 408 ALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQP 467
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398
+L+ C + G +D A K +++ DH
Sbjct: 468 DDITYLGVLSACNHSGMVDQAR---KFFAKMRSDH 499
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 137/333 (41%), Gaps = 66/333 (19%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKN-----------P--------- 44
+A + G +D + ++ + + W ++++GY + N P
Sbjct: 279 NAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTI 338
Query: 45 -----------NKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTG 93
N+S+ +F +M AG+ PD T + A L E+ + I K
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNK 398
Query: 94 YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFE 153
++D+ + N+LI MY CG A++VF M + +W +M+ G A G+
Sbjct: 399 IKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQG-------- 450
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
+EA+ +F +M+D+ + +++T + VL AC H G +DQ
Sbjct: 451 -----------------------QEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQ 487
Query: 214 GRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
R M D + +L ++DM + G +KEA + + + + + +W A++G
Sbjct: 488 ARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSI-VWGALLGA 546
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
+H E + +I+ + PD LL
Sbjct: 547 SRLHN--DEPMAELAAKKILELEPDNGAVYALL 577
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 185/500 (37%), Positives = 276/500 (55%), Gaps = 66/500 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S +S N++Y+ V + + P F NT+++ Y++S P +++ + +M + G+ D+
Sbjct: 52 SVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRKKGLLGDNY 111
Query: 65 TYPFLAKASGRL-------------AKRELA---------VAVHAQIAKTGY-------- 94
TYPF+ KA G + KR ++++ + +TG+
Sbjct: 112 TYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGF 171
Query: 95 -ESDLFISNSLIHMYGSCG---------------DIV-----------------YAREVF 121
E DL NS++ Y CG D+V AR F
Sbjct: 172 SEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFF 231
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
D MPT+ VSWNSM+DGYAK GEM +AR++F+ M ++NV+SWS +IDGY D KEAL
Sbjct: 232 DSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALN 291
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+F +M G K + V++V + AC+ LGALDQGR + YM + L + +QT+L+DMY
Sbjct: 292 LFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYL 351
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
KCG+ EA +F+ + + +V+ WN MI GL M+GF KE+LE F +M++ I D++ F
Sbjct: 352 KCGSXDEARXIFNSMPER--NVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLF 409
Query: 302 LGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
LG+L AC+H LV E + F + G + PK EHY C+VD L RAGQ+ + I MP
Sbjct: 410 LGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMP 469
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
++P A++ GSLL C H + LAEIV ++L EL+ D G YV +SN+YA W+
Sbjct: 470 MKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLR 529
Query: 421 TREAMETRGVKKYPGWSFVE 440
R+ M+ R +KK G S +E
Sbjct: 530 IRKLMKERKMKKDIGRSVIE 549
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 113/277 (40%), Gaps = 39/277 (14%)
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+ +HAQ+ T SD F ++ L+ D V ++ +
Sbjct: 28 LQIHAQLITTNLISDTFAASRLL-------DSVVSKTL---------------------- 58
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
+N A VF + + N + ++ Y + + AL + EMR G + T VL
Sbjct: 59 -NVNYAELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVL 117
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
AC + L +G ++ + +G + + LI MY +CG A VF G + D
Sbjct: 118 KACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFS--EKD 175
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
++ WN+M+GG G ++ + +F EM + I G G V A FF
Sbjct: 176 LVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKM---GEVNRARVFFD 232
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
S+ R +V + M+D ++ G++ A E +M
Sbjct: 233 SMPTRDLVS----WNSMIDGYAKVGEMEVAREIFBKM 265
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 179/444 (40%), Positives = 266/444 (59%), Gaps = 7/444 (1%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+ F+A+S G + Y+ ++ S + P F++NT+IRGYSKS +P++S+ LF +M R V
Sbjct: 220 IFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVD 279
Query: 61 PDHLTYPFLAKASGRLA-KRELAVA---VHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
PD T+ FL K R+ L VA +H + K G+ LF+ N+LIH+Y + G
Sbjct: 280 PDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAA 339
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
A +VF+ M VSW+ ++ + + GE+ +ARQVF MPER+VVSW+ ++ GY +
Sbjct: 340 AHQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRS 399
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
+EAL +F EMRDVG + +EV +VSV+ AC LG L+ G + RY+ + G + L +L
Sbjct: 400 REALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNAL 459
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
IDMYAKCG + A VF+ +E+ ++ WN+MI A HG +++ +FT M GI P
Sbjct: 460 IDMYAKCGCMDLAWQVFNNMER--KSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRP 517
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEF 355
D +TFL LL+A H G V + + F+S+ + G+ EHY CMVD L RAG++ EAY+
Sbjct: 518 DGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKL 577
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
I M + + G+LL C +G +++ E V KKL+EL+PD G Y+ L ++Y R
Sbjct: 578 ITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGRR 637
Query: 416 DEARTTREAMETRGVKKYPGWSFV 439
EA R AM+ G KK G S+V
Sbjct: 638 AEAIELRRAMDVNGAKKTLGCSWV 661
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 48/199 (24%)
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
GE+ + RQV +M VSW+ ++ Y + +E L +F E+RDV + +V + V
Sbjct: 103 GELELPRQV--MMKYLGDVSWTVMVSMYAQAKRSREPLELFREIRDVRVRPTDVVTMGV- 159
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV------ 256
D+ + + Y+ +K + + LP SL M C + +AL + H +
Sbjct: 160 -------DYDKYKTLKSYISNKVMHM-LPTSQSLASMAEACLTM-QALKLIHALAFRANL 210
Query: 257 ------------------------------EKHQSDVLIWNAMIGGLAMHGFVKESLELF 286
+ HQ + +N +I G + +S++LF
Sbjct: 211 HHHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLF 270
Query: 287 TEMQIVGITPDEITFLGLL 305
+M+ + PD TF LL
Sbjct: 271 NQMRRNCVDPDGFTFTFLL 289
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/438 (37%), Positives = 266/438 (60%), Gaps = 5/438 (1%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG--VSPDH 63
ALS +DY+ ++L P +F N++IR + KS P KS + ++L +G + PD+
Sbjct: 49 ALSDHKYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDN 108
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T FL +A L RE + VH + G+++D + LI +Y G + +VF+
Sbjct: 109 YTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNS 168
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+P V +M+ A+CG++ AR++FE MPER+ ++W+A+I GY + G+ +EAL +F
Sbjct: 169 IPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVF 228
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
M+ G K N V ++SVL AC LGALDQGR Y+ + +T+ L T+L+D+YAKC
Sbjct: 229 HLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKC 288
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G +++A+ VF G+E + +V W++ + GLAM+GF ++ LELF+ M+ G+TP+ +TF+
Sbjct: 289 GDMEKAMEVFWGME--EKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVS 346
Query: 304 LLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+L C+ G V E F S+ G+ P+ EHY C+VD +RAG++ +A I QMP++
Sbjct: 347 VLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMK 406
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P A++ SLL + L+L + KK++EL+ + G YV LSN+YA WD R
Sbjct: 407 PHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVR 466
Query: 423 EAMETRGVKKYPGWSFVE 440
++M+++GV+K PG S +E
Sbjct: 467 QSMKSKGVRKQPGCSVME 484
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 129/282 (45%), Gaps = 37/282 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A + G++ ++ K+ + WN +I GY++ +++++F M GV + +
Sbjct: 182 TACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGV 241
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
+ A +L + H+ I + + + ++ +L+ +Y CGD+ A EVF GM
Sbjct: 242 AMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGM 301
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
K +W+S L+G A MN G ++ L +F
Sbjct: 302 EEKNVYTWSSALNGLA----MN---------------------------GFGEKCLELFS 330
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKC 243
M+ G N VT VSVL C+ +G +D+G+ M ++ G+ L L+D+YA+
Sbjct: 331 LMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARA 390
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLEL 285
G +++A+ + + + +W++++ M+ ++LEL
Sbjct: 391 GRLEDAVSIIQQMPM-KPHAAVWSSLLHASRMY----KNLEL 427
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 179/502 (35%), Positives = 273/502 (54%), Gaps = 69/502 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A S + + V + + +P + +NT+IR + ++ P + S+F +M +GV D+
Sbjct: 57 AAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNF 116
Query: 65 TYPFLAKA-SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG----------- 112
TYPFL KA SG++ R + + +HAQ+ K G+ D+F+ NSLI Y CG
Sbjct: 117 TYPFLLKACSGKVWVRVVEM-IHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVF 175
Query: 113 ----------------------DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
++ AR +FD MP + +VSWN++LDGY K GEMN A +
Sbjct: 176 EVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFE 235
Query: 151 VFELMPERNVVSWSALIDGYVKCGDY-------------------------------KEA 179
+FE MP RNVVSWS ++ GY K GD K+A
Sbjct: 236 LFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDA 295
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
+ ++ +M + G K ++ T++S+L ACA G L G+ + + + P+ +LIDM
Sbjct: 296 INLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDM 355
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
YAKCG+++ AL +FHG+ + DV+ WNA+I GLAMHG +++L+LF+ M+ G PD++
Sbjct: 356 YAKCGSLENALSIFHGMVR--KDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKV 413
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
TF+G+L AC H G V E ++F ++ + G+ P+ EHY CMVD L R G++ EA+ +
Sbjct: 414 TFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHS 473
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MPLEP A + G+LL C H LAE V +LV+ + G LSN+YA WD
Sbjct: 474 MPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNF 533
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R M++ ++K G S +E
Sbjct: 534 ANIRLRMKSTSIQKPSGGSSIE 555
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 12/230 (5%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ ++ C +M +A VF + + +V+ ++ LI +V+ + A +F EM+D G A+
Sbjct: 55 LIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCAD 114
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG--AIKEALIV 252
T +L AC+ + M+ + G L + + SLID Y KCG + A V
Sbjct: 115 NFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKV 174
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F + + D + WN+MIGGL G + E+ LF EM D +++ +L G
Sbjct: 175 FEVMA--ERDTVSWNSMIGGLVKVGELGEARRLFDEMP----ERDTVSWNTILDGYVKAG 228
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+ A+ F+ + R +V ++ MV S+AG + A +MP++
Sbjct: 229 EMNAAFELFEKMPARNVVS----WSTMVLGYSKAGDMDMARILFDKMPVK 274
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 168/431 (38%), Positives = 258/431 (59%), Gaps = 7/431 (1%)
Query: 14 DYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS-PDHLTYPFLAKA 72
DY+ + + +S+P +F N +IR + K P SISL+ M R+ V+ P+ T F+ +A
Sbjct: 83 DYALSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQA 142
Query: 73 -SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV- 130
S A RE A V + K G+ D+F+ N+LIH+Y +C + A++VFD +P+ V
Sbjct: 143 CSNAFAIREGA-QVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVV 201
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNSM+ G+ + G++++A+++F MPE++V+SW +I G V+ G+ ++AL F+E+ +
Sbjct: 202 SWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQK 261
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ NE LVS+L A A LG L+ G+ + +T L T+L+DMYAKCG I E+
Sbjct: 262 LRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESR 321
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F + + D WN MI GLA HG +E+L LF + G P +TF+G+L+AC+
Sbjct: 322 FLFDRMP--EKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSR 379
Query: 311 GGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E +FFK + G+ P+ EHY CMVD LSRAG V +A E I +MP P +
Sbjct: 380 AGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWA 439
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
S+L C HG ++L E +G KL+++ P H+G YV L+ ++A ++W++ R M R
Sbjct: 440 SVLGSCQVHGFIELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERN 499
Query: 430 VKKYPGWSFVE 440
K GWS +E
Sbjct: 500 SNKIAGWSLIE 510
>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
Length = 590
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/355 (46%), Positives = 228/355 (64%), Gaps = 7/355 (1%)
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFD--GMPTKMSVSWNSMLDGYAKCGEMNMA 148
K G + ++N L+ +Y + G + AR VFD G VSWN+M+ GY KCG++ A
Sbjct: 109 KCGALAHPVVTNCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYGKCGDLEAA 168
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
R+VF MPER +VSWSA+ID V+ G++ EAL +F++M G K + V LVSVL CAHL
Sbjct: 169 REVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVLKTCAHL 228
Query: 209 GALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
GAL++GR + R++ + G + L+T+L+DMY KCG + EA VF GV+ H DV++
Sbjct: 229 GALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQSH--DVVL 286
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
WNAMIGGLAM+G K +LELF M G P+E TF+ L AC H G V E F+S+
Sbjct: 287 WNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVFRSMR 346
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
G+ P+ EHY C+ D L RAG + EA + MP+EP AS G+L++ C+ H + + E
Sbjct: 347 DHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPMEPHASQWGALMSSCLMHNNVGVGE 406
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
VGKKL+EL+PD GRYV L N+YA+ W++A+ R+ ME RG KK G SF+E
Sbjct: 407 RVGKKLIELEPDDGGRYVALFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIE 461
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 144/312 (46%), Gaps = 21/312 (6%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ WNT++ GY K + + +FV+M G+ +++ + A R + A+ V
Sbjct: 149 VVSWNTMVSGYGKCGDLEAAREVFVRMPERGL----VSWSAMIDACVRTGEFSEALRVFD 204
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAR--------EVFDGMPTKMSVSWNSMLDGY 139
Q+ G++ D + S++ G + R E G P + + +++D Y
Sbjct: 205 QMTGNGFKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLE-TALVDMY 263
Query: 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLV 199
KCG MN A VF+ + +VV W+A+I G G K AL +F M D G NE T V
Sbjct: 264 CKCGCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFV 323
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA--LIVFHGVE 257
LCAC H G +D+G + R M D G+ L D+ + G ++EA +++ +E
Sbjct: 324 VALCACIHTGRVDEGEDVFRSMRDHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPME 383
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE-ITFLGLLSACAHGGLVME 316
H S W A++ MH V + +++ + PD+ ++ L + A GL +
Sbjct: 384 PHASQ---WGALMSSCLMHNNVGVGERVGK--KLIELEPDDGGRYVALFNLYAVNGLWED 438
Query: 317 AWYFFKSLGKRG 328
A K + +RG
Sbjct: 439 AKALRKMMEERG 450
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 170/431 (39%), Positives = 258/431 (59%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + ++ K+ + + + WNT+I GYS+ + + LF M A + D +T +
Sbjct: 165 GQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKII 224
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L E A ++ I + E D+++ N+LI MYG A+ VFD M + V
Sbjct: 225 LACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIV 284
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+++ G+AK G + AR++F+ MP+R+V+SW+++I GY + + +A+ +F+EM
Sbjct: 285 SWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAK 344
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K ++VT+ SVL ACAHLG LD G + Y+ G+ + + SLIDMY KCG +++AL
Sbjct: 345 VKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKAL 404
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VFH ++ D + W ++I GLA++GF +L+LF++M G+ P TF+G+L ACAH
Sbjct: 405 EVFHRMK--DKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAH 462
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV + +F+S+ G+VP +HY C+VD LSR+G + +AYEFI +MP+ P +
Sbjct: 463 AGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWR 522
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
LL+ C HG + LAEI K+L+EL P G YV LSN YA RWD+A RE ME
Sbjct: 523 ILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSD 582
Query: 430 VKKYPGWSFVE 440
V+K G S +E
Sbjct: 583 VQKPSGSSSIE 593
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 120/427 (28%), Positives = 206/427 (48%), Gaps = 68/427 (15%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
N+ + V + + P + WN +IRG S+S +P ++I ++ +M G++ ++LT FL K
Sbjct: 65 NLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFK 124
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A R++ +H K G+ES LF+SN+LIHMY CG + +A+++FDGM + VS
Sbjct: 125 ACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVS 184
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
WN+++ GY++ + YKE L +F+ M
Sbjct: 185 WNTLICGYSQYNK-------------------------------YKEVLRLFDAMTAANI 213
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY----------- 240
KA+ VT+V ++ AC+HLG + M++Y+ + L + + L +LIDMY
Sbjct: 214 KADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQG 273
Query: 241 --------------------AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
AK G + A +F + K DV+ W +MI G +
Sbjct: 274 VFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKR--DVISWTSMITGYSQASQFS 331
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMV 340
++++LF EM + PD++T +LSACAH G + W + + G+ ++
Sbjct: 332 DAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLI 391
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA-EIVGKKLVE-LQPDH 398
D + G V +A E +M + + S S+++G +G + A ++ + L E +QP H
Sbjct: 392 DMYCKCGMVEKALEVFHRMKDKDSVSWT-SVISGLAVNGFANSALDLFSQMLREGVQPTH 450
Query: 399 DGRYVGL 405
G +VG+
Sbjct: 451 -GTFVGI 456
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 127/273 (46%), Gaps = 37/273 (13%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+GN+ + K+ ++ + W ++I GYS++ + ++ LF +M+ A V PD +T +
Sbjct: 296 VGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASV 355
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L K ++ AVH I + G ++D+++ NSLI MY CG + A EVF M K S
Sbjct: 356 LSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDS 415
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSW S++ G A G N AL +F +M
Sbjct: 416 VSWTSVISGLAVNGFAN-------------------------------SALDLFSQMLRE 444
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKE 248
G + T V +L ACAH G +++G M GL + ++D+ ++ G I +
Sbjct: 445 GVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDK 504
Query: 249 ALIVFHGVEKHQ--SDVLIWNAMIGGLAMHGFV 279
A + ++K DV++W ++ +HG V
Sbjct: 505 A---YEFIKKMPIVPDVVVWRILLSACKLHGNV 534
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 179/444 (40%), Positives = 266/444 (59%), Gaps = 7/444 (1%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+ F+A+S G + Y+ ++ S + P F++NT+IRGYSKS +P++S+ LF +M R V
Sbjct: 33 IFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVD 92
Query: 61 PDHLTYPFLAKASGRLA-KRELAVA---VHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
PD T+ FL K R+ L VA +H + K G+ LF+ N+LIH+Y + G
Sbjct: 93 PDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAA 152
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
A +VF+ M VSW+ ++ + + GE+ +ARQVF MPER+VVSW+ ++ GY +
Sbjct: 153 AHQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRS 212
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
+EAL +F EMRDVG + +EV +VSV+ AC LG L+ G + RY+ + G + L +L
Sbjct: 213 REALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNAL 272
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
IDMYAKCG + A VF+ +E+ ++ WN+MI A HG +++ +FT M GI P
Sbjct: 273 IDMYAKCGCMDLAWQVFNNMER--KSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRP 330
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEF 355
D +TFL LL+A H G V + + F+S+ + G+ EHY CMVD L RAG++ EAY+
Sbjct: 331 DGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKL 390
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
I M + + G+LL C +G +++ E V KKL+EL+PD G Y+ L ++Y R
Sbjct: 391 ITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGRR 450
Query: 416 DEARTTREAMETRGVKKYPGWSFV 439
EA R AM+ G KK G S+V
Sbjct: 451 AEAIELRRAMDVNGAKKTLGCSWV 474
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 169/398 (42%), Positives = 245/398 (61%), Gaps = 2/398 (0%)
Query: 45 NKSISLFVKMLR-AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNS 103
+ S+ +F+ M+R +G P+ T+ F+ KA G + K G ES+LF++N+
Sbjct: 13 HNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNA 72
Query: 104 LIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSW 163
+I MY + G + AR VFD + SWN M+ GY GE+ A+++F+ M ER+VVSW
Sbjct: 73 MIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSW 132
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
+ +I GYV+ G +KEAL +F EM G NE TL S L ACA+L ALDQGR + Y+
Sbjct: 133 TTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDK 192
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
+ + L SL+DMYAKCG I A VFH + V WNAMIGG AMHG KE++
Sbjct: 193 SEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAI 252
Query: 284 ELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDA 342
+LF +M++ ++P+++TF+ LL+AC+HG LV E +FKS+ G+ P+ EHY CMVD
Sbjct: 253 DLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDL 312
Query: 343 LSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRY 402
L R+G + EA E + MP+ P A++ G+LL C H ++ + +GK + EL DH G +
Sbjct: 313 LGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCH 372
Query: 403 VGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
V L+N+Y+ +WDEA+ R+ +E G KK PG S +E
Sbjct: 373 VLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIE 410
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 120/300 (40%), Gaps = 66/300 (22%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNK------------------------ 46
G +D + +V + ++ WN +I GY S +
Sbjct: 81 GLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYV 140
Query: 47 -------SISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
++ LF +ML+ G P+ T A L + +H I K+ + +
Sbjct: 141 QVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNER 200
Query: 100 ISNSLIHMYGSCGDIVYAREVF-DGMPTKMSV-SWNSMLDGYAKCGEMNMARQVFELMPE 157
+ SL+ MY CG+I +A +VF D K+ V WN+M+ GYA G+
Sbjct: 201 LLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKS------------ 248
Query: 158 RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMM 217
KEA+ +FE+M+ N+VT V++L AC+H +++GR
Sbjct: 249 -------------------KEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGY 289
Query: 218 LRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ M G+ + ++D+ + G +KEA + D IW A++G +H
Sbjct: 290 FKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPM-APDATIWGALLGACRIH 348
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 81/189 (42%), Gaps = 7/189 (3%)
Query: 11 GNIDYSCKVL--SHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPF 68
G ID++ KV + +++ WN +I GY+ ++I LF +M VSP+ +T+
Sbjct: 213 GEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVA 272
Query: 69 LAKASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
L A E +A + G E ++ ++ + G G + A E MP
Sbjct: 273 LLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMA 332
Query: 128 MSVS-WNSMLDGYAKCGEMNMARQVFELMPE---RNVVSWSALIDGYVKCGDYKEALVIF 183
+ W ++L ++ +++ +++ E ++ L + Y G + EA +
Sbjct: 333 PDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVR 392
Query: 184 EEMRDVGSK 192
+++ G K
Sbjct: 393 QKIEVSGRK 401
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 174/445 (39%), Positives = 268/445 (60%), Gaps = 24/445 (5%)
Query: 1 MLSFSALSYL-GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR--- 56
+++F +LS + G +DY+ V S + +P F + +I+G+S + NP +S+ L+ +ML
Sbjct: 44 LIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLN 103
Query: 57 --AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114
+GV + P + KA G+L + VH Q+ KT D F+ NS++ MY G+I
Sbjct: 104 YSSGVE---FSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEI 160
Query: 115 VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
AR VFD MP + VSWNSM+ GY K GE+ +A ++F+ MPER++VS +A+IDGY K
Sbjct: 161 ELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGK-- 218
Query: 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP-LQ 233
EM +G + + +VSVL A A LG +++G+ + Y+ + L+ +
Sbjct: 219 ----------EMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIG 268
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
++LIDMY+KCG I+ A VF + H+ ++ WN+MI GLA+HG +E+L++F EM+ +
Sbjct: 269 SALIDMYSKCGYIENAYHVFRSI-SHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMD 327
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEA 352
I P+EITFLGLLS C+HGGLV E ++F+S+ ++ +VP+ +HY CM+D RAG++ +A
Sbjct: 328 IEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDA 387
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412
I MP E ++L+ M HG +++ + + +EL PD YV LSN+YA
Sbjct: 388 LGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKA 447
Query: 413 KRWDEARTTREAMETRGVKKYPGWS 437
RWD+ R M RGVKK G S
Sbjct: 448 GRWDDVAKIRLMMRQRGVKKIAGCS 472
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 178/444 (40%), Positives = 266/444 (59%), Gaps = 7/444 (1%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+ F+A+S G + Y+ ++ S + P F++NT+IRGYSKS +P++S+ LF +M R V
Sbjct: 279 IFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVD 338
Query: 61 PDHLTYPFLAKASGRLA-KRELAVA---VHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
PD T+ FL K R+ L VA +H + K G+ LF+ N+LIH+Y + G
Sbjct: 339 PDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAA 398
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
A +VF+ M VSW+ ++ + + GE+ +ARQVF+ MPER+VVSW+ ++ GY +
Sbjct: 399 AHQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRS 458
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
+EAL +F EMRDVG + +EV +V V+ AC LG L+ G + RY+ + G + L +L
Sbjct: 459 REALELFREMRDVGVRPDEVAMVIVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNAL 518
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
IDMYAKCG + A VF+ +E+ ++ WN+MI A HG +++ +FT M GI P
Sbjct: 519 IDMYAKCGCMDLAWQVFNNMER--KSLITWNSMISACANHGNAEDAFRVFTLMLXSGIRP 576
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEF 355
D +TFL LL+A H G V + + F+S+ + G+ EHY CMVD L RAG++ EAY+
Sbjct: 577 DGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKL 636
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
I M + + G+LL C +G +++ E V KKL+EL+PD G Y+ L ++Y R
Sbjct: 637 ITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGRR 696
Query: 416 DEARTTREAMETRGVKKYPGWSFV 439
EA R AM+ G KK G S+V
Sbjct: 697 AEAIELRRAMDVNGAKKTLGCSWV 720
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 104/449 (23%), Positives = 188/449 (41%), Gaps = 76/449 (16%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+ F+A+S G + Y+ ++ S + P F++NT+IRGYSKS +P++S+ LF +M R V
Sbjct: 125 IFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVD 184
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDL------FISNSLIHMYGSCGDI 114
PD T+ FL K R+ + +I G + D +ISN ++HM + +
Sbjct: 185 PDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAGVDYDKYKTLKSYISNKVMHMLPTSQSL 244
Query: 115 VYAREVFDGMPTKMSV---SWNSMLDGYA-------------KCGEMNMARQVFELMPER 158
E M + ++ + L +A G ++ A ++F + +
Sbjct: 245 ASMAEACLAMQALKLIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQP 304
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
N ++ LI GY K +++ +F +MR + T +L +GR +
Sbjct: 305 NTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLL----------KGRSRM 354
Query: 219 RY--------------MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV-------- 256
R ++ G L + +LI +YA G A VF+ +
Sbjct: 355 RIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSW 414
Query: 257 ---------------------EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
E + DV+ W M+ G A +E+LELF EM+ VG+
Sbjct: 415 SGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVR 474
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
PDE+ + ++SAC G + + + + + G ++D ++ G + A++
Sbjct: 475 PDEVAMVIVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQV 534
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
M + + S+++ C NHG + A
Sbjct: 535 FNNMERKSLITW-NSMISACANHGNAEDA 562
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 172/431 (39%), Positives = 259/431 (60%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I + K+ +++ + WN++I GY+ N ++ LF KM G+ PD T+ L
Sbjct: 137 GLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLL 196
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ +L VH I TG + D+ + N+L+ MY CG++ A+ +FD K V
Sbjct: 197 SVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVV 256
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW SM+ YA+ G + +ARQ+F+ MP +NVVSW+++I Y++ G Y+EAL +F +MR+
Sbjct: 257 SWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSR 316
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+E TLVS+L AC+ LG L G+ + Y++ + + L SLIDMYAKCG + AL
Sbjct: 317 VVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTAL 376
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F +E +++ WN +IG LA+HG E+++LF EMQ G PDEIT GLLSAC+H
Sbjct: 377 DIF--LEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSH 434
Query: 311 GGLVMEAWYFFKSLGKRGMVPKS-EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV Y+F +G VP+ EHYACMVD L R G + EA E I +MP++P + G
Sbjct: 435 SGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWG 494
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C HG +++ + + K+L+EL+P G YV +SN+Y +RW++ + R+ M RG
Sbjct: 495 ALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRG 554
Query: 430 VKKYPGWSFVE 440
+KK S +E
Sbjct: 555 IKKGRAISSIE 565
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 201/414 (48%), Gaps = 76/414 (18%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++SF A+ G++ Y+ ++ + P F +N++IRGYS S +P ++ LF +M+ +G+S
Sbjct: 26 LISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLS 85
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ T PF+ KA G + AV VH K G S +F+ N+LI +Y CG I AR++
Sbjct: 86 PNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKL 145
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD + K VSWNSM+ GYA G++KEA
Sbjct: 146 FDDITDKTLVSWNSMIGGYA-------------------------------HMGNWKEAF 174
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
++F +MR+ G + + T V++L C+ LD GR + + G+ + + ++ +L+DMY
Sbjct: 175 LLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMY 234
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV--------------------- 279
AKCG + A +F + +V+ W +MI A HG +
Sbjct: 235 AKCGNLHSAQAIFD--RTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSM 292
Query: 280 ----------KESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAW---YFFKSLG 325
+E+L+LF +M+ + PDE T + +L+AC+ G LVM Y + G
Sbjct: 293 ISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKG 352
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS---MLGSL-LTGC 375
G+ Y ++D ++ G V A + +MP + S ++G+L L GC
Sbjct: 353 AYGVTL----YNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGC 402
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 131/290 (45%), Gaps = 39/290 (13%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SA + G+I+ + ++ + + WN++I Y + +++ LF KM + V PD
Sbjct: 262 ISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDE 321
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + A +L + +H I + + NSLI MY CG +V A ++F
Sbjct: 322 ATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLE 381
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
MP K VSWN ++ A G CG EA+ +F
Sbjct: 382 MPGKNLVSWNVIIGALALHG-----------------------------CG--LEAIKLF 410
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS----LIDM 239
EEM+ G+ +E+TL +L AC+H G +D G L Y G+ +P + ++D+
Sbjct: 411 EEMQADGTLPDEITLTGLLSACSHSGLVDMG---LYYFDRMGVIYRVPREIEHYACMVDL 467
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
+ G + EA I G + DV++W A++G +HG V+ ++ ++
Sbjct: 468 LGRGGLLGEA-IELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQL 516
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 169/430 (39%), Positives = 263/430 (61%), Gaps = 5/430 (1%)
Query: 14 DYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML--RAGVSPDHLTYPFLAK 71
+Y+ V + +++ F WNT+IRG+S+S P +IS+F+ ML V P LTYP + K
Sbjct: 75 NYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFK 134
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A L +H ++ K G E D FI N+++HMY +CG +V A +F GM V+
Sbjct: 135 AYASLGLARDGRQLHGRVIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVA 194
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
WNS++ G AKCG ++ A+++F+ MP+RN VSW+++I G+V+ G +K+AL +F EM++
Sbjct: 195 WNSIIMGLAKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDV 254
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
K + T+VS+L ACA+LGA +QGR + +Y++ L + T+LIDMY KCG +E L
Sbjct: 255 KPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLK 314
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF Q + WN+MI GLA +G + +++LF E++ G+ PD ++F+G+L+ACAH
Sbjct: 315 VFECAPTKQ--LSCWNSMILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVLTACAHS 372
Query: 312 GLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
G V +A FF+ + ++ M+ P +HY CMV+ L AG + EA I +MP+E + S
Sbjct: 373 GEVHKAGEFFRLMREKYMIEPSIKHYTCMVNVLGGAGLLDEAEALIKKMPVEGDTIIWSS 432
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL C +G +++A+ L L PD YV +SN YA + ++EA R M+ R +
Sbjct: 433 LLAACRKNGNVEMAKRAANCLKNLDPDETCGYVLMSNAYASYGLFEEAVEQRLLMKERQM 492
Query: 431 KKYPGWSFVE 440
+K G S +E
Sbjct: 493 EKEVGCSSIE 502
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 132/314 (42%), Gaps = 36/314 (11%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
L+ G ID + K+ + WN++I G+ ++ ++ +F +M V PD T
Sbjct: 201 GLAKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFT 260
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
L A L E +H I + +E + + +LI MY CG +VF+ P
Sbjct: 261 MVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAP 320
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
TK WNSM+ G A G ER A+ +F E
Sbjct: 321 TKQLSCWNSMILGLANNG-----------CEER--------------------AMDLFLE 349
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCG 244
+ G + + V+ + VL ACAH G + + R M +K + ++ T ++++ G
Sbjct: 350 LERTGLEPDSVSFIGVLTACAHSGEVHKAGEFFRLMREKYMIEPSIKHYTCMVNVLGGAG 409
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+ EA + + + D +IW++++ +G V+ + ++ + PDE L
Sbjct: 410 LLDEAEALIKKMPV-EGDTIIWSSLLAACRKNGNVEMAKRAANCLK--NLDPDETCGYVL 466
Query: 305 LS-ACAHGGLVMEA 317
+S A A GL EA
Sbjct: 467 MSNAYASYGLFEEA 480
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 270/445 (60%), Gaps = 38/445 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++SF ALS+ G+++Y+ K+ + + NP F NT+IRGY++S+NP +++SL+ M+ GV
Sbjct: 49 LISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVP 108
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
D+ TYPF+ A RL +L H ++ K G+ SDLF+ N+LI Y +C
Sbjct: 109 VDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNC--------- 159
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
G A VF+ R+VV+W+ +I+ ++ G ++A
Sbjct: 160 ----------------------GSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAF 197
Query: 181 VIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYM--IDK-GLSLTLPLQTSL 236
+ +EM + + + +EVT+VS++ ACA LG L++G+ + Y +DK ++ L L+T+L
Sbjct: 198 DLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETAL 257
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
+DMYAKCG+I AL VF + +V WNA+IGGLAMHG ++++ LF +M+ + P
Sbjct: 258 VDMYAKCGSIDLALQVFRRMR--VRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMP 315
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEF 355
D++TF+ LL AC+H GLV E F+++ + + P+ EHY C+VD L RA +V +A F
Sbjct: 316 DDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAF 375
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
I MP++ + + +LL C + G DLAE +G++++EL+PD GRYV LSN+YA +W
Sbjct: 376 IENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQW 435
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
D A R+ M+ +G++K PG S++E
Sbjct: 436 DHALKLRKQMKNKGIEKTPGCSWIE 460
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/425 (37%), Positives = 253/425 (59%), Gaps = 4/425 (0%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V S+ + W T+I GY+ +++ +F ML + V P+ +T + A +
Sbjct: 313 QVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMG 372
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
E+ VH ++ + L + N+L+ MY C +V ARE+FD M TK SW SM++
Sbjct: 373 NLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVN 432
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
GYAKCG++ AR+ F+ P +N V WSA+I GY + KE+L +F EM + G E T
Sbjct: 433 GYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHT 492
Query: 198 LVSVLCACAHLGALDQGRMMLRY-MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
LVSVL AC L L+ G + +Y ++ K + L++ L+ +++DMYAKCG+I A VF +
Sbjct: 493 LVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTM 552
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
+ +++ WN MI G A +G K+++ +F +M+ +G P+ ITF+ LL+AC+HGGL+ E
Sbjct: 553 P--ERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISE 610
Query: 317 AWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
+F ++ ++ G+ P+ HYACMVD L R G + EAY+ I MP++P + G+LL C
Sbjct: 611 GREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNAC 670
Query: 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPG 435
HG ++LA + L+ L P+ G YV L+N A ++W + R R M+ +GVKK PG
Sbjct: 671 RMHGNVELARLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPG 730
Query: 436 WSFVE 440
+S +E
Sbjct: 731 YSLIE 735
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 183/394 (46%), Gaps = 69/394 (17%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++F AL++ G++ Y+ + + + P F WNT+IRGY ++ P + S FV M + V
Sbjct: 195 VIAFCALAHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVE 254
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
D ++ F KA + +V+ + K G++ +L + N LIH Y G + AR+V
Sbjct: 255 MDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQV 314
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD K V+W +M+DGYA A +VFELM +V
Sbjct: 315 FDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHV-------------------- 354
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+ NEVTL++V+ AC+ +G L+ G+ + + +K + +L L +L+DMY
Sbjct: 355 -----------EPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMY 403
Query: 241 AKCGAIKEALIVFHGV-----------------------------EKHQSDVLIWNAMIG 271
KC + +A +F + + + + + W+AMI
Sbjct: 404 VKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIA 463
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAW---YFFKSLGKR 327
G + + KESL+LF EM G+ P E T + +LSAC L + W YF +GK
Sbjct: 464 GYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFV--VGK- 520
Query: 328 GMVPKSEHYA-CMVDALSRAGQVTEAYEFICQMP 360
++P S +VD ++ G + A E MP
Sbjct: 521 -IIPLSVTLENAIVDMYAKCGSIDAATEVFSTMP 553
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 12/156 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+ID + +V S + + WNT+I GY+ + ++I++F +M G P+++T+ L
Sbjct: 540 GSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLL 599
Query: 71 KA---SGRLAK-RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
A G +++ RE + K G + + ++ + G G + A ++ MP
Sbjct: 600 TACSHGGLISEGREYFDNME---RKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPM 656
Query: 127 K-MSVSWNSMLDGYAKCGEMNMAR----QVFELMPE 157
+ +W ++L+ G + +AR + L PE
Sbjct: 657 QPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPE 692
>gi|356544269|ref|XP_003540576.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 522
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 181/446 (40%), Positives = 261/446 (58%), Gaps = 18/446 (4%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+F A S ++ Y+ + SH+ P +F +NT+I +S P+ S F++ML A VS
Sbjct: 42 LLAFYARS---DLRYAHTLFSHIPFPNLFDYNTIITAFS----PHYSSLFFIQMLNAAVS 94
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ T F S +H+ I + G+ SD ++ SL+ Y + G AR +
Sbjct: 95 PNSRT--FSLLLSKSSPSLPFLHQLHSHIIRRGHVSDFYVITSLLAAYSNHGSTRAARRL 152
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER--NVVSWSALIDGYVKCGDYKE 178
FD P K W S++ GY G +N AR +F+ +PER N VS+SA++ GYVK G ++E
Sbjct: 153 FDQSPYKNVACWTSLVTGYCNNGLVNDARNLFDAIPERERNDVSYSAMVSGYVKNGCFRE 212
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS---LTLPLQTS 235
+ +F E++D K N L SVL ACA +GA ++G+ + Y +D+ S L L T+
Sbjct: 213 GIQLFRELKDRNVKPNNSLLASVLSACASVGAFEEGKWIHAY-VDQNKSQCYYELELGTA 271
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
LID Y KCG ++ A VF ++ DV W+AM+ GLA++ +E+LELF EM+ VG
Sbjct: 272 LIDFYTKCGCVEPAQRVFGNMK--TKDVAAWSAMVLGLAINAKNQEALELFEEMEKVGPR 329
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYE 354
P+ +TF+G+L+AC H L EA F + K G+V EHY C+VD L+R+G++ EA E
Sbjct: 330 PNAVTFIGVLTACNHKDLFGEALKLFGYMSDKYGIVASIEHYGCVVDVLARSGKIEEALE 389
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414
FI M +EP + GSLL GC H ++L VGK LVEL+P H GRYV LSNVYA +
Sbjct: 390 FIKSMEVEPDGVIWGSLLNGCFLHNNIELGHKVGKYLVELEPGHGGRYVLLSNVYATMGK 449
Query: 415 WDEARTTREAMETRGVKKYPGWSFVE 440
W+ TR+ M+ RGV G SF+E
Sbjct: 450 WEAVLETRKFMKDRGVPAVSGSSFIE 475
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 170/438 (38%), Positives = 258/438 (58%), Gaps = 26/438 (5%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A S + + V + + +P + +NT+IR + ++ P + S+F +M +GV D+
Sbjct: 57 AAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNF 116
Query: 65 TYPFLAKA-SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
TYPFL KA SG++ R + + +HAQ+ K G+ D+F+ NSLI Y G++ AR +FD
Sbjct: 117 TYPFLLKACSGKVWVRVVEM-IHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDE 175
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
MP + +VSWN++LDGY K GEMN A ++FE MP RNVVSWS +
Sbjct: 176 MPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTM----------------- 218
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
+ G K ++ T++S+L ACA G L G+ + + + P+ +LIDMYAKC
Sbjct: 219 ----EAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKC 274
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G+++ AL +FHG+ + DV+ WNA+I GLAMHG +++L+LF+ M+ G PD++TF+G
Sbjct: 275 GSLENALSIFHGMVR--KDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVG 332
Query: 304 LLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+L AC H G V E ++F ++ + G+ P+ EHY CMVD L R G++ EA+ + MPLE
Sbjct: 333 VLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLE 392
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P A + G+LL C H LAE V +LV+ + G LSN+YA WD R
Sbjct: 393 PNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIR 452
Query: 423 EAMETRGVKKYPGWSFVE 440
M++ ++K G S +E
Sbjct: 453 LRMKSTSIQKPSGGSSIE 470
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 96/203 (47%), Gaps = 20/203 (9%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ ++ C +M +A VF + + +V+ ++ LI +V+ + A +F EM+D G A+
Sbjct: 55 LIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCAD 114
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
T +L AC+ + M+ + G L + + SLID Y K G + EA +F
Sbjct: 115 NFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFD 174
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI----------VGITPDEITFLGL 304
E + D + WN ++ G G + + ELF +M G+ D+ T + +
Sbjct: 175 --EMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISI 232
Query: 305 LSACAHGGLVMEAWYFFKSLGKR 327
LSACA GL+ LGKR
Sbjct: 233 LSACAVSGLL--------GLGKR 247
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 167/411 (40%), Positives = 251/411 (61%), Gaps = 3/411 (0%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN++I GY + + P +++ ++ +M+ V PD +T + A +L +L +H I
Sbjct: 223 WNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIE 282
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
++G + + N+L+ MY CGD+ + +FD M K VSW +M+ GYAK G ++MA +
Sbjct: 283 ESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGK 342
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F MPE+NVV+W+A+I V+ EAL +F EM+ K ++VT++ L AC+ LGA
Sbjct: 343 LFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGA 402
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
LD G Y+ LSL + L T+LIDMYAKCG + +AL VF+ + + S L W A+I
Sbjct: 403 LDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNS--LTWTAII 460
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GM 329
GGLA++G V +++ F++M G+ PDEITFLG+L+AC HGGLV E +F + R +
Sbjct: 461 GGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNL 520
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P+ +HY+CMV+ L RAG + EA E I MP+E A + G+L C H L + E
Sbjct: 521 SPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAAS 580
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
KL++L P G YV L+N+Y +W+EA+ R+ M RGV+K PG S +E
Sbjct: 581 KLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIE 631
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/431 (30%), Positives = 213/431 (49%), Gaps = 68/431 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGV 59
++SF A+S N+DY K+L++L NP +F WN VIRG +S+NP K + L+ +ML RAG
Sbjct: 91 LISFCAISESRNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGC 150
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
PD+ TY FL K L + + Q+ K G++ D+++ N +IHM S G
Sbjct: 151 RPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVG------- 203
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
E +A +VF+ R++VSW++LI+GYV+ +EA
Sbjct: 204 ------------------------ESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREA 239
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
+ I+++M K +EVT++ V+ ACA L +L GR + RY+ + GL+L + L +L+DM
Sbjct: 240 MGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDM 299
Query: 240 YAKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAMI 270
Y KCG ++ ++F + K + +V+ WNAMI
Sbjct: 300 YVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMI 359
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
G E+LELF EMQ + PD++T L LSAC+ G + + + K +
Sbjct: 360 GSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLS 419
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMP----LEPTASMLGSLLTGCMNHGKLDLAEI 386
++D ++ G +T+A + +MP L TA + G L G +N +++
Sbjct: 420 LDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKM 479
Query: 387 VGKKLVELQPD 397
+ L+ PD
Sbjct: 480 IDSGLM---PD 487
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 118/267 (44%), Gaps = 33/267 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + K+ + + WN +I ++ +++ LF +M + + PD +T
Sbjct: 335 GLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCL 394
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A +L + + H I K D+ + +LI MY CG++ A +VF+ MP + S+
Sbjct: 395 SACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSL 454
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W +++ G A G +N +A+ F +M D G
Sbjct: 455 TWTAIIGGLALYGNVN-------------------------------DAIFYFSKMIDSG 483
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
+E+T + VL AC H G +++GR M + LS + ++++ + G ++EA
Sbjct: 484 LMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEA 543
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ + ++D ++W A+ +H
Sbjct: 544 EELIKTMPM-EADAMVWGALFFACGIH 569
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 169/421 (40%), Positives = 252/421 (59%), Gaps = 6/421 (1%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82
+ +P + +NT+ R Y+ S P ++ L MLR G PD T+PFL KA LA
Sbjct: 48 IHHPSTYLYNTMFRVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAHLPKG 107
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+H Q K G +F+ NSLIH+YGS + AR VFDGM + SW ++L YA
Sbjct: 108 QELHCQALKFGLGGHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASWTTLLACYANS 167
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
+ AR+VF+ MPER+V+S+SA+I YV+ ++EAL +F E+ V + ++ ++SVL
Sbjct: 168 CSVKAARKVFDEMPERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIEPSDSCVMSVL 227
Query: 203 CACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV-EKHQ 260
CACA+LGALD GR + Y+ KG + + T+LIDM+ KCG+I+ AL+VF G EKH
Sbjct: 228 CACANLGALDVGRWVYSYVCQSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHV 287
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
+ W AM+ GLAMHG ++ +E F +M G+ P+ +TF+ LLS C+H GLV E Y+
Sbjct: 288 GE---WTAMLSGLAMHGLGEQLIEAFEKMVDSGVKPNGVTFVALLSGCSHSGLVNEGLYY 344
Query: 321 FKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
F + G+ P EH+ C+VD L RAG + +A + I +MP EP A++ GSLL C +
Sbjct: 345 FDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGSLLNACRVYK 404
Query: 380 KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
+++ E+ + L++ +P + Y+ L ++Y RWDE + M+ G +K PG S +
Sbjct: 405 NVEIGELAAQWLIKDEPWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLI 464
Query: 440 E 440
E
Sbjct: 465 E 465
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 110/279 (39%), Gaps = 38/279 (13%)
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
++ AR +F+ + + ++ + Y AL++ M G + T +L A
Sbjct: 38 LHHARLLFDAIHHPSTYLYNTMFRVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKA 97
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV-------- 256
C+ L L +G+ + + GL + ++ SLI +Y + A VF G+
Sbjct: 98 CSALAHLPKGQELHCQALKFGLGGHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASW 157
Query: 257 ---------------------EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
E + V+ ++AMI +E+L+LF E+ V I
Sbjct: 158 TTLLACYANSCSVKAARKVFDEMPERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIE 217
Query: 296 PDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
P + + +L ACA+ G L + W + +G S ++D + G + A
Sbjct: 218 PSDSCVMSVLCACANLGALDVGRWVYSYVCQSKGDYVDSRIATALIDMFFKCGSIEHAL- 276
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
+ + E ++L+G HG +G++L+E
Sbjct: 277 LVFEGAKEKHVGEWTAMLSGLAMHG-------LGEQLIE 308
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 248/412 (60%), Gaps = 4/412 (0%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W+ ++ Y +++ +++ LFV+M +GV+ D + A R+ E+ VH
Sbjct: 238 WSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAV 297
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS-VSWNSMLDGYAKCGEMNMAR 149
K G E + + N+LIH+Y SCG+IV AR +FD + +SWNSM+ GY +CG + A
Sbjct: 298 KVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAE 357
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
+F MPE++VVSWSA+I GY + + EAL +F+EM+ G + +E LVS + AC HL
Sbjct: 358 MLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLA 417
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
LD G+ + Y+ L + + L T+LIDMY KCG ++ AL VF+ +E + V WNA+
Sbjct: 418 TLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAME--EKGVSTWNAV 475
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
I GLAM+G V++SL +F +M+ G P+EITF+G+L AC H GLV + ++F S+
Sbjct: 476 ILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHK 535
Query: 330 VPKS-EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
+ + +HY CMVD L RAG + EA E I MP+ P + G+LL C H ++ E +G
Sbjct: 536 IEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLG 595
Query: 389 KKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+KL++LQPDHDG +V LSN+YA W R M GV K PG S +E
Sbjct: 596 RKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIE 647
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 186/377 (49%), Gaps = 69/377 (18%)
Query: 1 MLSFSALSY-LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKN-PNKSISLFVKMLRAG 58
+++FS+ S L YS ++ +HL NP F WNT++R + +N P++++ + L +
Sbjct: 41 LINFSSHSTTLVPFHYSLRIFNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASH 100
Query: 59 VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
PD TYP L + +HA +G++ D+++ N+L+++Y CG + AR
Sbjct: 101 AKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSAR 160
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN------------------- 159
VF+ P VSWN++L GY + GE+ A +VFE MPERN
Sbjct: 161 RVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEK 220
Query: 160 --------------VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
+VSWSA++ Y + +EALV+F EM+ G +EV +VS L AC
Sbjct: 221 ARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSAC 280
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA------------------------ 241
+ + ++ GR + + G+ + L+ +LI +Y+
Sbjct: 281 SRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISW 340
Query: 242 --------KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
+CG+I++A ++F+ + + DV+ W+AMI G A H E+L LF EMQ+ G
Sbjct: 341 NSMISGYLRCGSIQDAEMLFYSMP--EKDVVSWSAMISGYAQHECFSEALALFQEMQLHG 398
Query: 294 ITPDEITFLGLLSACAH 310
+ PDE + +SAC H
Sbjct: 399 VRPDETALVSAISACTH 415
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 171/473 (36%), Positives = 271/473 (57%), Gaps = 40/473 (8%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
++LS G + Y+ K+ + P + N V+RG ++S P K+++L+ +M + GVSPD
Sbjct: 54 ASLSVPGALKYAHKLFEEIPKPDVSICNHVLRGSAQSLKPEKTVALYTEMEKRGVSPDRY 113
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T+ F+ KA +L R A+H ++ + G+ + ++ N+LI + +CGD+ A E+FD
Sbjct: 114 TFTFVLKACSKLEWRSNGFAIHGKVVRHGFLLNEYVKNALILFHANCGDLGIASELFDDS 173
Query: 125 PTKMSVSWNSMLDGYA-------------------------------KCGEMNMARQVFE 153
V+W+SM GYA KC EM+ AR++F+
Sbjct: 174 AKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPDKDQVAWNVMITGCLKCREMDSARELFD 233
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
E++VV+W+A+I GYV CG KEAL IF+EMRD G + VT++S+L ACA LG L+
Sbjct: 234 RFTEKDVVTWNAMISGYVNCGYPKEALSIFKEMRDAGEHPDVVTILSLLSACAVLGDLET 293
Query: 214 GRMMLRYMIDKG-----LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
G+ + Y+++ + + P+ +LIDMYAKCG+I A+ VF G++ D+ WN
Sbjct: 294 GKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGMK--DRDLSTWNT 351
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR- 327
+I GLA+H + S+E+F EMQ + + P+E+TF+G++ AC+H G V E +F +
Sbjct: 352 LIVGLALH-HAEGSVEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMY 410
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ P +HY CMVD L RAG + EA+ F+ M +EP A + +LL C +G ++L +
Sbjct: 411 NIEPNIKHYGCMVDMLGRAGLLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYA 470
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+KL+ ++ D G YV LSN+YA +WD + R+ + VKK G S +E
Sbjct: 471 NEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGISLIE 523
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 170/431 (39%), Positives = 259/431 (60%), Gaps = 8/431 (1%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y V ++ P F W +IRGY+ ++S + + +M R GV P T+ L KA G
Sbjct: 94 YPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACG 153
Query: 75 RLAKRELAVAVHAQ-IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
+L VHAQ I G+ SDL++ NS+I +Y CG + AR+VFD M + VSW
Sbjct: 154 AALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWT 213
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
++ YAK G+M A +F+ +P +++V+W+A++ GY + G KEAL F++M+DVG +
Sbjct: 214 ELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMET 273
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKCGAIKEAL 250
+EVTL V+ ACA LGA+ +R + ++ G S + + ++LIDMY+KCG+ EA
Sbjct: 274 DEVTLAGVISACAQLGAVKHAN-WIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAY 332
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF ++ + +V +++MI G AMHG +L+LF +M I P+++TF+G+LSAC+H
Sbjct: 333 KVFEVMK--ERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSH 390
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV + F + K G+ P +HYACMVD L RAG + EA + + MP+EP + G
Sbjct: 391 AGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWG 450
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C HG D+A+I +L +L+P+ G Y+ LSN+YA RW+E R+ + +G
Sbjct: 451 ALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKG 510
Query: 430 VKKYPGWSFVE 440
KK PG S+ E
Sbjct: 511 FKKNPGCSWFE 521
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 128/276 (46%), Gaps = 37/276 (13%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A + G+++ + + L + + W ++ GY+++ P +++ F KM G+ D +T
Sbjct: 218 AYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGY--ESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+ A +L + A + ++G+ ++ + ++LI MY CG A +VF+
Sbjct: 278 LAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEV 337
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + S++SM+ GYA G + A Q+F M + +
Sbjct: 338 MKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEI----------------------- 374
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK--GLSLTLPLQTSLIDMYA 241
+ N+VT + +L AC+H G ++QGR + M +K G++ + ++D+
Sbjct: 375 --------RPNKVTFIGILSACSHAGLVEQGRQLFAKM-EKFFGVAPSPDHYACMVDLLG 425
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
+ G ++EAL + + + + +W A++G +HG
Sbjct: 426 RAGCLEEALDLVKTMPM-EPNGGVWGALLGACRIHG 460
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 87/193 (45%), Gaps = 7/193 (3%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+ D + KV + +F ++++I GY+ + ++ LF ML+ + P+ +T+
Sbjct: 323 SKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFI 382
Query: 68 FLAKASGRLAKRELAVAVHAQIAK-TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A E + A++ K G ++ + G G + A ++ MP
Sbjct: 383 GILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPM 442
Query: 127 KMSVS-WNSMLDGYAKCGEMNMAR----QVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
+ + W ++L G ++A+ ++F+L P + ++ L + Y G ++E
Sbjct: 443 EPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPN-GIGNYILLSNIYASAGRWEEVSK 501
Query: 182 IFEEMRDVGSKAN 194
+ + +R+ G K N
Sbjct: 502 LRKVIREKGFKKN 514
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 172/443 (38%), Positives = 258/443 (58%), Gaps = 8/443 (1%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNK---SISLFVKMLRAGVS 60
A S G++ Y+ V +H P + NT+IR S PN +I+++ K+
Sbjct: 54 IEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLWALCAK 113
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD T+PF+ K + R++ +H Q+ G++S + + LI MY SCG + AR++
Sbjct: 114 PDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKM 173
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDYKE 178
FD M K WN++L GY K GEM+ AR + E+MP RN VSW+ +I GY K G E
Sbjct: 174 FDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASE 233
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
A+ +F+ M + +EVTL++VL ACA LG+L+ G + Y+ +G++ + L ++ID
Sbjct: 234 AIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVID 293
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MYAK G I +AL VF V ++ +V+ W +I GLA HG E+L +F M G+ P++
Sbjct: 294 MYAKSGNITKALDVFECV--NERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPND 351
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
+TF+ +LSAC+H G V F S+ K G+ P EHY CM+D L RAG++ EA E I
Sbjct: 352 VTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIK 411
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
MP + A++ GSLL H L+L E +L++L+P++ G Y+ L+N+Y+ RWDE
Sbjct: 412 SMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDE 471
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
+R R M+ GVKK G S +E
Sbjct: 472 SRMMRNMMKGIGVKKMAGESSIE 494
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 169/432 (39%), Positives = 255/432 (59%), Gaps = 7/432 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG +D S V + P +F ++ +I + +S+ +++ + +ML GV P+ T+ +
Sbjct: 92 LGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSV 151
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
K+ E +H Q K G SDL++ L+ +Y GD+V AR++FD MP +
Sbjct: 152 LKS----CSLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSL 207
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VS +ML Y+K GE++ AR +FE M ER+VV W+ +I GY + G E+L +F M
Sbjct: 208 VSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVA 267
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ NEVT+++VL AC LGAL+ GR + Y+ +KG+ + + + T+LIDMY+KCG++++A
Sbjct: 268 KAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDA 327
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+VF + DV+ WN+MI G AMHGF + +L+LF EM G P +ITF+G+LSAC
Sbjct: 328 RLVFDRIR--DKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACG 385
Query: 310 HGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
HGGLV E FF+ + K G+ PK EHY CMV+ L RAG + EAY + M + +
Sbjct: 386 HGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLW 445
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C H + L E + K LV+ + + G YV LSN+YA W+ R M+
Sbjct: 446 GTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEH 505
Query: 429 GVKKYPGWSFVE 440
G++K G S +E
Sbjct: 506 GIEKEHGCSSIE 517
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 136/286 (47%), Gaps = 39/286 (13%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
+ S +G +D + + + + WN +I GY++S PN+S+ LF +ML A P+
Sbjct: 214 LTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNE 273
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T + A G+L E +H+ I G + ++ + +LI MY CG + AR VFD
Sbjct: 274 VTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDR 333
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+ K V+WNSM+ GYA G A Q +F
Sbjct: 334 IRDKDVVAWNSMIVGYAMHGFSQHALQ-------------------------------LF 362
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAK 242
EEM + G K ++T + +L AC H G +++GR R M DK G+ + ++++ +
Sbjct: 363 EEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGR 422
Query: 243 CGAIKEALIVFHGVEKHQS---DVLIWNAMIGGLAMHGFVKESLEL 285
G ++EA +G+ K+ + D ++W ++G +H +K E+
Sbjct: 423 AGHLEEA----YGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEI 464
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 111/245 (45%), Gaps = 37/245 (15%)
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
YA G ++ + VF E NV S+SA+I +V+ + A + +M G + N T
Sbjct: 89 YAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTF 148
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA----------------- 241
SVL +C +L+ G+++ I GL L ++T L+D+YA
Sbjct: 149 SSVLKSC----SLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPE 204
Query: 242 --------------KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFT 287
K G + +A +F G++ + DV+ WN MIGG A G ESL+LF
Sbjct: 205 RSLVSLTTMLTCYSKMGELDKARSLFEGMK--ERDVVCWNVMIGGYAQSGVPNESLKLFR 262
Query: 288 EMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347
M + P+E+T L +LSAC G + + + +G+ ++D S+ G
Sbjct: 263 RMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCG 322
Query: 348 QVTEA 352
+ +A
Sbjct: 323 SLEDA 327
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 185/466 (39%), Positives = 268/466 (57%), Gaps = 38/466 (8%)
Query: 11 GNIDYSCKVLSH-LSNPRIFYWNTVIRGYSKSKNPNKSISLFVK--MLRAGVSPDHLTYP 67
GN+ +S + +H LS P IF +N +++ +S+ + +IS F +L +PD T+
Sbjct: 72 GNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFT 131
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG--------------- 112
+ KA LA+ VH + K G ES+LF+ NSL+ +Y G
Sbjct: 132 SVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVR 191
Query: 113 DIV----------------YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP 156
D+V AR VFDGM K VSW++M+ GYA+ G + ARQ+FE MP
Sbjct: 192 DVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMP 251
Query: 157 ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA-NEVTLVSVLCACAHLGALDQGR 215
RNVVSW+A+I GY + Y +A+ +F +M+ G A N+VTLVSVL ACAHLGALD G+
Sbjct: 252 MRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGK 311
Query: 216 MMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAM 275
+ R++ + + L L +L DMYAKCG + EA VFH E H+ DV+ W+ +I GLAM
Sbjct: 312 WIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFH--EMHERDVISWSIIIMGLAM 369
Query: 276 HGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSE 334
+G+ E+ F EM G+ P++I+F+GLL+AC H GLV + +F + + G+ PK E
Sbjct: 370 YGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIE 429
Query: 335 HYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVEL 394
HY C+VD LSRAG++ +A I MP++P + G+LL GC + + E V +++EL
Sbjct: 430 HYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILEL 489
Query: 395 QPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+H G V L+NVYA R D+A + R M K PG S++E
Sbjct: 490 DSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIE 535
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 128/274 (46%), Gaps = 34/274 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDH 63
S + +GN++ + ++ ++ + WN +I GY++++ +I LF +M G++P+
Sbjct: 232 SGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPND 291
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T + A L +L +H I + E LF+ N+L MY CG ++ A+ VF
Sbjct: 292 VTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHE 351
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + +SW+ ++ G A G N EA F
Sbjct: 352 MHERDVISWSIIIMGLAMYGYAN-------------------------------EAFNFF 380
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAK 242
EM + G + N+++ + +L AC H G +D+G M G++ + ++D+ ++
Sbjct: 381 AEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSR 440
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
G + +A + + + Q +V++W A++GG ++
Sbjct: 441 AGRLDQAESLINSM-PMQPNVIVWGALLGGCRIY 473
>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
Length = 558
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 177/422 (41%), Positives = 249/422 (59%), Gaps = 22/422 (5%)
Query: 29 FYWNTVIRGYS---KSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAV 85
F WN +IR S + IS++++M VSPD T+PFL + L
Sbjct: 25 FLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRT 84
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
HAQI G + D F+ SL++MY SCGD+ A+ VFD +K +WNS+++ YAK G +
Sbjct: 85 HAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLI 144
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-----DVGSKANEVTLVS 200
+ AR++F+ MPERNV+SWS LI+GYV CG YKEAL +F EM+ + + NE T+ +
Sbjct: 145 DDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMST 204
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
VL AC LGAL+QG+ + Y+ + + + L T+LIDMYAKCG+++ A VF+ + +
Sbjct: 205 VLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGS-K 263
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACAHGGLVMEAWY 319
DV ++AMI LAM+G E +LF+EM I P+ +TF+G+L AC H GL+ E
Sbjct: 264 KDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKS 323
Query: 320 FFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNH 378
+FK + + G+ P +HY CMVD R+G + EA FI MP+EP + GSLL+G
Sbjct: 324 YFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRML 383
Query: 379 GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSF 438
G + E K+L+EL P + G YV LSNVYA RW E G+ K PG S+
Sbjct: 384 GDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWME-----------GINKVPGCSY 432
Query: 439 VE 440
VE
Sbjct: 433 VE 434
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 38/283 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-----RAGV 59
+A + G ID + K+ + + W+ +I GY +++ LF +M A V
Sbjct: 136 NAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFV 195
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T + A GRL E VHA I K E D+ + +LI MY CG + A+
Sbjct: 196 RPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKR 255
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VF+ + +K ++V ++SA+I G E
Sbjct: 256 VFNALGSK------------------------------KDVKAYSAMICCLAMYGLTDEC 285
Query: 180 LVIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLI 237
+F EM + N VT V +L AC H G +++G+ + MI++ G++ ++ ++
Sbjct: 286 FQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMV 345
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
D+Y + G IKEA F + DVLIW +++ G M G +K
Sbjct: 346 DLYGRSGLIKEAE-SFIASMPMEPDVLIWGSLLSGSRMLGDIK 387
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 169/419 (40%), Positives = 251/419 (59%), Gaps = 6/419 (1%)
Query: 25 NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVA 84
+P + +NT+ R Y+ S P ++ L M R G PD T+PFL KA LA
Sbjct: 49 HPSTYLYNTMFRVYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQE 108
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+H Q K G +F+ NSLIH+YGS + AR VFDGM + SW ++L YA
Sbjct: 109 LHCQALKFGLGGHVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASWTTLLACYANSCS 168
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
+ AR+VF+ MPER+VVS+SA++ YV+ ++EAL +F E+ V + ++ ++SVLCA
Sbjct: 169 VEAARKVFDEMPERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIEPSDSCVMSVLCA 228
Query: 205 CAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV-EKHQSD 262
CA+LGALD GR + ++ KG + + T+LIDM+ KCG+I+ AL+VF G EKH +
Sbjct: 229 CANLGALDVGRWVYSFVCHSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGE 288
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
W AM+ GLAMHG ++ +E F +M GI PDE+TF+ LLS C+H GLV E Y+F
Sbjct: 289 ---WTAMLSGLAMHGLGEQLIEAFEKMVDSGIKPDEVTFVALLSGCSHSGLVNEGLYYFD 345
Query: 323 SL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
+ G+ P EH+ C+VD L RAG + +A + I +MP EP A++ G+LL C + +
Sbjct: 346 RMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGALLNACRVYKNV 405
Query: 382 DLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++ E+ + L++ +P + Y+ L ++Y RWDE + M+ G +K PG S +E
Sbjct: 406 EVGELAAQWLIKDEPWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIE 464
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 110/279 (39%), Gaps = 38/279 (13%)
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
++ AR +F+ + + ++ + Y AL++ M G + T +L A
Sbjct: 37 LHHARLLFDAVYHPSTYLYNTMFRVYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKA 96
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV-------- 256
C+ L L +G+ + + GL + ++ SLI +Y + A VF G+
Sbjct: 97 CSALAHLLKGQELHCQALKFGLGGHVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASW 156
Query: 257 ---------------------EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
E + V+ ++AM+ +E+LELF E+ V I
Sbjct: 157 TTLLACYANSCSVEAARKVFDEMPERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIE 216
Query: 296 PDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
P + + +L ACA+ G L + W + +G S ++D + G + A
Sbjct: 217 PSDSCVMSVLCACANLGALDVGRWVYSFVCHSKGDYVDSRIATALIDMFFKCGSIEHAL- 275
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
+ + E ++L+G HG +G++L+E
Sbjct: 276 LVFEGAKEKHVGEWTAMLSGLAMHG-------LGEQLIE 307
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 169/442 (38%), Positives = 262/442 (59%), Gaps = 4/442 (0%)
Query: 1 MLSFSALSYLG-NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
++SF ALS ++ ++ ++ L + F WNTVIR +++ P K+I LF ML +
Sbjct: 48 IISFCALSSNQFSLSHAYRLFLGLRHRSTFIWNTVIRAFAEKNEPRKAIMLFKNMLYSNF 107
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P++ TY FL KA L L +A H Q K G+E F+ N L+HM+ G + AR+
Sbjct: 108 LPNNYTYSFLFKACTDLNNLYLGLACHCQSIKLGWEFYDFVQNGLVHMFAIFGCMDSARK 167
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
+FD + ++W ++++GY + G++ + R++F+ MPERN VSWSA+I GYV+ G ++EA
Sbjct: 168 LFDLSSNRDVITWTALINGYVRAGQVLIGRELFDKMPERNSVSWSAMITGYVRVGFFEEA 227
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F M G N +V + ACA LGALDQGR + Y+ + L + +LIDM
Sbjct: 228 LELFNAMLISGFWPNHAGIVCAINACASLGALDQGRWIHCYIKRNRMDLDRVMGAALIDM 287
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
YAKCG I+ A +F E DV ++ +I GLA HG ++ELF M G+ P+E+
Sbjct: 288 YAKCGCIEIACSIFG--ELRNRDVHVYTCLISGLANHGQSATAVELFERMHSEGVVPNEV 345
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
TF+ +L+AC+ GLV + F+++ K G P+ +HY C+VD L RAG++ EA + + +
Sbjct: 346 TFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQVQHYGCLVDLLGRAGKLEEAKKLVKE 405
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP++P + +LG+LL +G ++L E + L +L DH G +V LSN+YA +WDE
Sbjct: 406 MPMKPDSYVLGALLNASRVYGDVELGEETVESLAQLSLDHSGVHVVLSNMYASANKWDEV 465
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R M + V+K PG S ++
Sbjct: 466 ARVRRGMGDKKVRKVPGCSLIK 487
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 167/432 (38%), Positives = 263/432 (60%), Gaps = 37/432 (8%)
Query: 13 IDYSCKVLSHLSNP-RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFLA 70
+ Y+ KV S + P +F WNT+IRGY++ N ++SL+ +M +G V PD TYPFL
Sbjct: 69 MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLL 128
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA G++A L +H+ + ++G+ S +++ NSL+H+Y
Sbjct: 129 KAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLY---------------------- 166
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
A CG++ A +VF+ MPE+++V+W+++I+G+ + G +EAL ++ EM G
Sbjct: 167 ---------ANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKG 217
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K + T+VS+L ACA +GAL G+ YMI GL+ L L+D+YA+CG ++EA
Sbjct: 218 IKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAK 277
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACA 309
+F E + + W ++I GLA++G KE++ELF M+ G+ P EITF+G+L AC+
Sbjct: 278 TLFD--EMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACS 335
Query: 310 HGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H G+V E + +F+ + + + P+ EH+ CMVD L+RAGQV +AYE+I +MP++P +
Sbjct: 336 HCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIW 395
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+LL C HG DLAE+ K+++L+P+H G YV LSN+YA +RW + + R+ M
Sbjct: 396 RTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD 455
Query: 429 GVKKYPGWSFVE 440
GV+K PG S VE
Sbjct: 456 GVRKVPGHSLVE 467
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 132/288 (45%), Gaps = 34/288 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + KV + + WN+VI G++++ P ++++L+ +M G+ PD T L
Sbjct: 170 GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLL 229
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A ++ L H + K G +L SN L+ +Y CG + A+ +FD M K SV
Sbjct: 230 SACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSV 289
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW S++ G A G A ++F+ M + +G + C
Sbjct: 290 SWTSLIVGLAVNGLGKEAIELFKNMESK---------EGLLPC----------------- 323
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
E+T V +L AC+H G + +G R M ++ + + ++D+ A+ G +K+A
Sbjct: 324 ----EITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKA 379
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
+ Q +V+IW ++G +HG L M+I+ + P+
Sbjct: 380 YEYILKMPM-QPNVVIWRTLLGACTVHG--DSDLAELARMKILQLEPN 424
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 177/443 (39%), Positives = 273/443 (61%), Gaps = 7/443 (1%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGV 59
+L+F A S G+I+Y+ V + NP IF WNT+IRG+S+S P SISL++ ML + V
Sbjct: 60 ILAFCA-SPAGDINYAYLVFVQIQNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSPV 118
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P LTYP + KA +L +H ++ K G E+D FI N+++ MY +CG AR+
Sbjct: 119 QPQRLTYPSVFKAFAQLDLASEGAQLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEARK 178
Query: 120 VFD-GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
VFD GM + V+WN+M+ G AKCG ++ +R++F+ M RN VSW+++I GYV+ G + +
Sbjct: 179 VFDRGMDFDI-VAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFD 237
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
AL +F++M+ + +E T+VS+L ACA LGA+ QG + YM+ K L + T++ID
Sbjct: 238 ALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIID 297
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MY+KCG+I +A+ VF + + WN+MI GLAM+G E+L+LF+ +Q + PD+
Sbjct: 298 MYSKCGSIDKAVQVFQSAPRR--GLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDD 355
Query: 299 ITFLGLLSACAHGGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
++F+ +L+AC H G+V +A YF K + P +H++CMVD L RAG + EA E I
Sbjct: 356 VSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKPGIKHFSCMVDVLGRAGLLEEAEELIR 415
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
M ++P A + GSLL C +G + +A+ L+EL P +V ++N YA ++E
Sbjct: 416 SMHVDPDAIIWGSLLWSCCKYGNIKMAKRAANHLIELNPSESSSFVLVANAYAAANNFEE 475
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
A R ++ + K PG S +E
Sbjct: 476 ALKERLTLKENHIGKEPGCSCIE 498
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 168/441 (38%), Positives = 260/441 (58%), Gaps = 5/441 (1%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++S A+S +I ++ K+ L + F WNT+IR + + ++SL+ ML+ G
Sbjct: 48 IISLFAVSSNADISHAYKLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFL 107
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P++ T+ F+ +A + +A HAQ+ K G+ES F+ N LIH+Y + + AR++
Sbjct: 108 PNNYTFSFVLRACTD--NSPVGLASHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKL 165
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD + ++W ++++GY K G + AR++F+ MPERN VSWSA+I GYV G ++EAL
Sbjct: 166 FDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREAL 225
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F +++ G + N +V L AC++LG+LD GR + Y+ G L L T+L+DMY
Sbjct: 226 ELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDMY 285
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG I+ A VF + D + ++I GLA HG ++++LF MQ + P+E+T
Sbjct: 286 AKCGCIEIACSVFEKMP--DKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVT 343
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+ +LSAC+ GLV E F + G+ P +HY CMVD L RAG + EA + +M
Sbjct: 344 FICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLLEEAKRLVREM 403
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P+EP + +LG+LL C HG ++L + + LVE DH G +V LSN+YA +WD
Sbjct: 404 PMEPDSYVLGALLNSCRVHGDVELGKETVESLVERGLDHGGVHVLLSNMYASSNQWDWVV 463
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R+ M + VKK PG S +E
Sbjct: 464 KVRKEMGAKKVKKVPGCSSIE 484
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 174/461 (37%), Positives = 254/461 (55%), Gaps = 35/461 (7%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+ Y+ +L+ + +P F N+VIR Y+ S P ++++F +ML V PD ++ F+ KA
Sbjct: 60 VSYAHSILNRIESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKA 119
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
E +H K+ +D+F+ N+LI++YG G AR+V D MP + +VSW
Sbjct: 120 CAAFCGFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSW 179
Query: 133 NS-------------------------------MLDGYAKCGEMNMARQVFELMPERNVV 161
NS M+ GYA G + AR+VF+ MP ++VV
Sbjct: 180 NSLLSAYLDKGLVEEARALFDEMEERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVV 239
Query: 162 SWSALIDGYVKCGDYKEALVIFEEM-RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY 220
SW+A++ Y G Y E L +F M D + + TLV+VL ACA LG+L QG + Y
Sbjct: 240 SWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVY 299
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+ G+ + + T+L+DMY+KCG I +AL VF K DV WN++I GL++HG K
Sbjct: 300 IDKHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTSKR--DVSTWNSIITGLSVHGLGK 357
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACM 339
++LE+F+EM G P+ ITF+G+LSAC H GL+ +A F+ + G+ P EHY CM
Sbjct: 358 DALEIFSEMVYEGFKPNGITFIGVLSACNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCM 417
Query: 340 VDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399
VD L R G+ EA E + ++P + + +L SLL C GKL+ AE + +L+E P
Sbjct: 418 VDLLGRMGKFEEAEELVNEVPADEASILLESLLGACKRFGKLEQAERIANRLLESNPRES 477
Query: 400 GRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
YV +SN+YA RWDEA R M VKK PG S +E
Sbjct: 478 SGYVQMSNLYASHGRWDEAMEVRGKMRAERVKKNPGCSMIE 518
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 169/469 (36%), Positives = 266/469 (56%), Gaps = 35/469 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
SA S L I+ + +++ NP + +N +IRG +++ ++ MLR V P
Sbjct: 18 SACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHMLRNNVMPTSY 77
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
++ L KA L AVH + K G++S +F+ +LI Y + GD+ +R VFD M
Sbjct: 78 SFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDM 137
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD--------- 175
P + +W +M+ + + G+M A ++F+ MPE+NV +W+A+IDGY K G+
Sbjct: 138 PERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFN 197
Query: 176 ----------------------YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
YKE + +F ++ D G +EVT+ +V+ ACAHLGAL
Sbjct: 198 QMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALAL 257
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
G+ + Y++ +G L + + +SLIDMYAKCG+I AL+VF+ ++ ++ WN +I GL
Sbjct: 258 GKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQT--KNLFCWNCIIDGL 315
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPK 332
A HG+V+E+L +F EM+ I P+ +TF+ +L+AC H G + E +F S+ + + P+
Sbjct: 316 ATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQ 375
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV 392
EHY CMVD LS+AG + +A E I M +EP + + G+LL GC H L++A I + L+
Sbjct: 376 VEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEIAHIAVQNLM 435
Query: 393 ELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV-KKYPGWSFVE 440
L+P + G Y L N+YA RW+E R M+ GV K+ PG S+VE
Sbjct: 436 VLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSSWVE 484
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/372 (22%), Positives = 137/372 (36%), Gaps = 99/372 (26%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
N + + +N+A F + NV+ ++ALI G V C ++ALV + M
Sbjct: 14 NQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHMLRNNVM 73
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ S++ AC L G + ++ G + +QT+LI+ Y+ G + + V
Sbjct: 74 PTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRV 133
Query: 253 FHGV-----------------------------EKHQSDVLIWNAMIGGLAMHGFV---- 279
F + E + +V WNAMI G G
Sbjct: 134 FDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAE 193
Query: 280 ---------------------------KESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
KE + LF ++ G+ PDE+T ++SACAH G
Sbjct: 194 FLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLG 253
Query: 313 -----------LVMEAW----YFFKSL----GKRGMVP---------KSEH---YACMVD 341
LV++ + Y SL K G + ++++ + C++D
Sbjct: 254 ALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIID 313
Query: 342 ALSRAGQVTEAYEFICQMP---LEPTASMLGSLLTGCMNHGKLD-----LAEIVGKKLVE 393
L+ G V EA +M + P A S+LT C + G ++ +V +
Sbjct: 314 GLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIA 373
Query: 394 LQPDHDGRYVGL 405
Q +H G V L
Sbjct: 374 PQVEHYGCMVDL 385
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 181/512 (35%), Positives = 277/512 (54%), Gaps = 77/512 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++F +L G++ Y+ V S + NP + N++IRG + +++ + +M+ G+
Sbjct: 26 IVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLI 85
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD T+P L K+ ++ + +H K G+ SD + N+L++MY +CG +V AR+V
Sbjct: 86 PDRYTFPSLFKSCRNSSEGK---QIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKV 142
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE----------------------- 157
FD M K VSW +M+ +A+ + N A ++F+ M +
Sbjct: 143 FDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARD 202
Query: 158 -----------------RNVVSWSALIDGYVKCG-------------------------- 174
R+VV + L+D Y KCG
Sbjct: 203 LAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMING 262
Query: 175 -----DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229
+Y+EAL++F EM+ G K ++VT+ S+L AC HLGAL+ G+ + Y+ + + +
Sbjct: 263 HVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVD 322
Query: 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
+ L T+L+DMYAKCG+I+ A+ VFH E + DV+ W A+I GLAM G + +L+ F EM
Sbjct: 323 VALGTALVDMYAKCGSIETAIQVFH--EMPEKDVMTWTALILGLAMCGQAENALQYFDEM 380
Query: 290 QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQ 348
I G+ PD ITF+G+L+AC+H G V E F S+ G+ P EHY +VD L RAG+
Sbjct: 381 HIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGR 440
Query: 349 VTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNV 408
+ EA E I MP+ P +LG LL C HG L+ AE K+L+E+ P H G YV LSN+
Sbjct: 441 IAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNI 500
Query: 409 YAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
Y K+W+EA+ TRE M RG++K PG S +E
Sbjct: 501 YKSSKKWEEAKRTRELMAERGMRKPPGCSQIE 532
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 150/367 (40%), Gaps = 82/367 (22%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYG--SCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+HAQ+ +TG D F ++ ++ G + YAR VF +P S + NS++ G C
Sbjct: 7 IHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRG---C 63
Query: 143 GEMNMARQ---------VFELMPER------------------------------NVVSW 163
+ N+ ++ V L+P+R + +
Sbjct: 64 TDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSEGKQIHCHSTKLGFASDTYAQ 123
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDV--------------------------------GS 191
+ L++ Y CG A +F++M D
Sbjct: 124 NTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENV 183
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
K NEVTLV+VL ACA L + + Y+ + G + L T L+D+Y KCG ++ A
Sbjct: 184 KPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARD 243
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
+F + + ++ WN MI G +E+L LF EMQ GI D++T LL AC H
Sbjct: 244 LFDKAQ--EKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHL 301
Query: 312 GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP----TASM 367
G + + + K+ + +VD ++ G + A + +MP + TA +
Sbjct: 302 GALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALI 361
Query: 368 LGSLLTG 374
LG + G
Sbjct: 362 LGLAMCG 368
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 166/411 (40%), Positives = 252/411 (61%), Gaps = 3/411 (0%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN++I G K ++I ++ +M V P+ +T + + ++ L H I
Sbjct: 227 WNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIK 286
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ G E + ++N+L+ MY CG+++ AR +FD M K VSW +M+ GYA+ G +++AR+
Sbjct: 287 EHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVARE 346
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+ +PE++VV W+A+I G V+ KEAL +F EM+ + ++VT+V+ L AC+ LGA
Sbjct: 347 ILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGA 406
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
LD G + Y+ LS+ + L T+L+DMYAKCG I AL VF E Q + L W A+I
Sbjct: 407 LDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFE--EIPQRNCLTWTAVI 464
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GM 329
GLA+HG +++L F++M +GI PDEITFLG+LSAC HGGLV E +F + + +
Sbjct: 465 CGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNV 524
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
PK +HY+CMVD L RAG + EA E + MP+ A++LG+L C +G + + E
Sbjct: 525 SPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAF 584
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
KL+E+ P G YV L+++Y+ K W EAR+ R+ M +GV+K PG S VE
Sbjct: 585 KLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVE 635
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 184/408 (45%), Gaps = 65/408 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-V 59
+++F ALS +DY ++L + +F WN IRGY +S + L+ +ML G +
Sbjct: 95 LVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTL 154
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
PD+ TYP L K L + V + K G+E D+F+ N+ I M SCG++ A +
Sbjct: 155 KPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYD 214
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VF+ + V+WNSM I G VK G EA
Sbjct: 215 VFNKSRVRDLVTWNSM-------------------------------ITGCVKRGLAIEA 243
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
+ I++EM + NE+T++ ++ +C+ + L+ G+ Y+ + GL T+PL +L+DM
Sbjct: 244 IKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDM 303
Query: 240 YAKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAMI 270
Y KCG + A ++F + + + V+ WNA+I
Sbjct: 304 YVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAII 363
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
G KE+L LF EMQI I PD++T + LSAC+ G + + + + +
Sbjct: 364 SGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLS 423
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMP----LEPTASMLGSLLTG 374
+VD ++ G + A + ++P L TA + G L G
Sbjct: 424 IDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHG 471
>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 478
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 178/431 (41%), Positives = 245/431 (56%), Gaps = 15/431 (3%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82
+ NP WN VIRGY++S P K++ + M+ + PD T+ L A R +
Sbjct: 1 MDNPTTTVWNHVIRGYARSHTPWKAVECYTHMVSSKAEPDGFTHSSLLSACARGGLVKEG 60
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
VHA + GY S++F+ SLI Y G + AR VFDGMP + VSWNSML GY +C
Sbjct: 61 EQVHATVLVKGYCSNVFVDTSLITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAGYVRC 120
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
+ + AR+VF++MP RNVVSW+ ++ G + G ++AL++F EMR + ++V LV+ L
Sbjct: 121 ADFDGARRVFDVMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRACVELDQVALVAAL 180
Query: 203 CACAHLGALDQGR-----MMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
ACA LG L GR + R++ ++ L +LI MYA CG + EA VF V+
Sbjct: 181 SACAELGDLKLGRWIHWYVQQRFVARNWQQPSVRLNNALIHMYASCGILHEAYQVF--VK 238
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEM-----QIVGITPDEITFLGLLSACAHGG 312
+ + W +MI A G KE+L+LF M ++ G+ PDEITF+G+L AC+H G
Sbjct: 239 MPRKSTVSWTSMIMAFAKQGLGKEALDLFKTMLSDGVKVDGVRPDEITFIGVLCACSHAG 298
Query: 313 LVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
V E F S+ G+ P EHY CMVD LSRAG + EA I MPL P ++ G+L
Sbjct: 299 FVDEGHQIFASMKHTWGISPSIEHYGCMVDLLSRAGLLDEARGLIETMPLNPNDAIWGAL 358
Query: 372 LTGCMNHGKLDLAEIVGKKLV-ELQPDHDGRY-VGLSNVYAIFKRWDEARTTREAMETRG 429
L GC H +LA V KLV EL D Y V LSN+YA +RW + T R+ M G
Sbjct: 359 LGGCRIHRNSELASQVENKLVPELNGDQAAGYLVLLSNIYAFGQRWQDVITVRQKMIEMG 418
Query: 430 VKKYPGWSFVE 440
VKK PG S+++
Sbjct: 419 VKKPPGRSWIQ 429
>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
Length = 635
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 162/371 (43%), Positives = 232/371 (62%), Gaps = 4/371 (1%)
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP-TKMSV 130
A+G +A R + VHA K G DL++ N+ IH YG CGD+ R+VFD +P + V
Sbjct: 141 AAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVV 200
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WN++L GY + G + +AR+VF+ MP R+ VSWS +I GYVK G+ + AL +F+ M G
Sbjct: 201 TWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQG 260
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
KANE +V+ L A A LG L+QG+ + + G+++++ L +LIDMY+KCG++ A
Sbjct: 261 VKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAK 320
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + + DV WN+MI GLA HG ++++LF + G P ITF+G+L+AC+
Sbjct: 321 EVFDAMPRR--DVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSR 378
Query: 311 GGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E +FK + ++ + + EHY CMVD LSRAG V EA E I M + P + G
Sbjct: 379 TGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWG 438
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
++L+ C HG +DL VG KL+EL P HDG YV L+++YA K+WDE R R+ M RG
Sbjct: 439 TILSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRG 498
Query: 430 VKKYPGWSFVE 440
K GWS +E
Sbjct: 499 TSKSAGWSLME 509
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 110/250 (44%), Gaps = 33/250 (13%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W+TVI GY K P ++ +F M+ GV + A+ +L E VH +
Sbjct: 233 WSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVK 292
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ G + + +LI MY CG + A+EVFD MP + +WNSM+ G A G +
Sbjct: 293 RVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGH---- 348
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+A+ +FE+ G +T V VL AC+ G
Sbjct: 349 ---------------------------DAVQLFEKFVSEGFCPTSITFVGVLNACSRTGL 381
Query: 211 LDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
+D+GR + M +K + + ++D+ ++ G ++EA+ + G+ + D ++W +
Sbjct: 382 VDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGM-RIPPDPVLWGTI 440
Query: 270 IGGLAMHGFV 279
+ HG V
Sbjct: 441 LSACKRHGLV 450
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 167/411 (40%), Positives = 252/411 (61%), Gaps = 3/411 (0%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN++I G K ++I ++ +M V P+ +T + + ++ L H I
Sbjct: 227 WNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIK 286
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ G E + ++N+L+ MY CG+++ AR +FD M K VSW +M+ GYA+ G +++AR+
Sbjct: 287 EHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVARE 346
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+ +PE++VV W+A+I G V+ KEAL +F EM+ + ++VT+V+ L AC+ LGA
Sbjct: 347 ILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGA 406
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
LD G + Y+ LS+ + L T+L+DMYAKCG I AL VF E Q + L W A+I
Sbjct: 407 LDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFE--EIPQRNCLTWTAVI 464
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
GLA+HG +++L F++M +GI PDEITFLG+LSAC HGGLV E +F + + V
Sbjct: 465 CGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNV 524
Query: 331 -PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
PK +HY+CMVD L RAG + EA E + MP+ A++LG+L C +G + + E
Sbjct: 525 SPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAF 584
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
KL+E+ P G YV L+++Y+ K W EAR+ R+ M +GV+K PG S VE
Sbjct: 585 KLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVE 635
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 184/408 (45%), Gaps = 65/408 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-V 59
+++F ALS +DY ++L + +F WN IRGY +S + L+ +ML G +
Sbjct: 95 LVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTL 154
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
PD+ TYP L K L + V + K G+E D+F+ N+ I M SCG++ A +
Sbjct: 155 KPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYD 214
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VF+ + V+WNSM I G VK G EA
Sbjct: 215 VFNKSRVRDLVTWNSM-------------------------------ITGCVKRGLAIEA 243
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
+ I++EM + NE+T++ ++ +C+ + L+ G+ Y+ + GL T+PL +L+DM
Sbjct: 244 IKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDM 303
Query: 240 YAKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAMI 270
Y KCG + A ++F + + + V+ WNA+I
Sbjct: 304 YVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAII 363
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
G KE+L LF EMQI I PD++T + LSAC+ G + + + + +
Sbjct: 364 SGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLS 423
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMP----LEPTASMLGSLLTG 374
+VD ++ G + A + ++P L TA + G L G
Sbjct: 424 IDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHG 471
>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
Length = 786
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 160/367 (43%), Positives = 231/367 (62%), Gaps = 4/367 (1%)
Query: 76 LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP-TKMSVSWNS 134
+A R + VHA K G DL++ N+LIH YG CGD+ R+VFD +P + V+WN+
Sbjct: 143 IASRLMGAHVHALAVKAGAAGDLYVRNALIHFYGVCGDVAAMRKVFDELPLVRDVVTWNA 202
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
+L GY + G + +AR+VF+ MP R+ VSWS ++ GYVK G+ + AL +F+ M G KAN
Sbjct: 203 VLAGYVRAGMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGELEVALGVFKNMVVQGVKAN 262
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
E +V+ L A A LG L+QG+ + + G+++++ L +L+DMY+KCG++ A VF
Sbjct: 263 EAAIVTALSAAAQLGLLEQGKFVHEVIKRAGVAMSMNLGAALVDMYSKCGSVAAAKEVFD 322
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
+ DV WN+MI GLA HG ++++LF + G P ITF+G+L+AC+ GLV
Sbjct: 323 AMP--WRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTNITFVGVLNACSRTGLV 380
Query: 315 MEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
E ++FK + ++ G+ + EHY CMVD LSRAG V EA E I M + P + G++L+
Sbjct: 381 DEGRWYFKLMAEKYGIESEMEHYGCMVDLLSRAGLVQEAIELIEGMHIPPDPVLWGTVLS 440
Query: 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
C HG +DL VG KL+EL P HDG YV L+++YA K+WDE R R+ M RG K
Sbjct: 441 ACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKS 500
Query: 434 PGWSFVE 440
GWS +E
Sbjct: 501 AGWSLME 507
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 33/250 (13%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W+TV+ GY K ++ +F M+ GV + A+ +L E VH I
Sbjct: 231 WSTVVGGYVKEGELEVALGVFKNMVVQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVIK 290
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ G + + +L+ MY CG + A+EVFD MP + +WNSM+ G A G +
Sbjct: 291 RAGVAMSMNLGAALVDMYSKCGSVAAAKEVFDAMPWRDVFAWNSMICGLATHGLGH---- 346
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+A+ +FE+ G +T V VL AC+ G
Sbjct: 347 ---------------------------DAVQLFEKFVSEGFCPTNITFVGVLNACSRTGL 379
Query: 211 LDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
+D+GR + M +K G+ + ++D+ ++ G ++EA+ + G+ D ++W +
Sbjct: 380 VDEGRWYFKLMAEKYGIESEMEHYGCMVDLLSRAGLVQEAIELIEGMHI-PPDPVLWGTV 438
Query: 270 IGGLAMHGFV 279
+ HG V
Sbjct: 439 LSACKRHGLV 448
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 170/431 (39%), Positives = 259/431 (60%), Gaps = 8/431 (1%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y V ++ P F W +IRGY+ ++S + + +M R GV P T+ L KA G
Sbjct: 94 YPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACG 153
Query: 75 RLAKRELAVAVHAQ-IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
+L VHAQ I G+ SDL++ NS+I +Y CG + AR+VFD M + VSW
Sbjct: 154 AALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWT 213
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
++ YAK G+M A +F+ +P +++V+W+A++ GY + G KEAL F++M+DVG +
Sbjct: 214 ELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMET 273
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKCGAIKEAL 250
+EVTL V+ ACA LGA+ +R + ++ G S + + ++LIDMY+KCG+ EA
Sbjct: 274 DEVTLAGVISACAQLGAVKHAN-WIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAY 332
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF ++ + +V +++MI G AMHG +L+LF +M I P+++TF+G+LSAC+H
Sbjct: 333 KVFEVMK--ERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSH 390
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV + F + K G+ P +HYACMVD L RAG + EA + + MP+EP + G
Sbjct: 391 AGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWG 450
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C HG D+A+I +L +L+P+ G Y+ LSN+YA RW+E R+ + +G
Sbjct: 451 ALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKG 510
Query: 430 VKKYPGWSFVE 440
KK PG S+ E
Sbjct: 511 FKKNPGCSWFE 521
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 127/276 (46%), Gaps = 37/276 (13%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A + G+++ + + L + W ++ GY+++ P +++ F KM G+ D +T
Sbjct: 218 AYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGY--ESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+ A +L + A + ++G+ ++ + ++LI MY CG A +VF+
Sbjct: 278 LAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEV 337
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + S++SM+ GYA G + A Q+F M + +
Sbjct: 338 MKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEI----------------------- 374
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK--GLSLTLPLQTSLIDMYA 241
+ N+VT + +L AC+H G ++QGR + M +K G++ + ++D+
Sbjct: 375 --------RPNKVTFIGILSACSHAGLVEQGRQLFAKM-EKFFGVAPSPDHYACMVDLLG 425
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
+ G ++EAL + + + + +W A++G +HG
Sbjct: 426 RAGCLEEALDLVKTMPM-EPNGGVWGALLGACRIHG 460
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 87/193 (45%), Gaps = 7/193 (3%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+ D + KV + +F ++++I GY+ + ++ LF ML+ + P+ +T+
Sbjct: 323 SKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFI 382
Query: 68 FLAKASGRLAKRELAVAVHAQIAK-TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A E + A++ K G ++ + G G + A ++ MP
Sbjct: 383 GILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPM 442
Query: 127 KMSVS-WNSMLDGYAKCGEMNMAR----QVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
+ + W ++L G ++A+ ++F+L P + ++ L + Y G ++E
Sbjct: 443 EPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPN-GIGNYILLSNIYASAGRWEEVSK 501
Query: 182 IFEEMRDVGSKAN 194
+ + +R+ G K N
Sbjct: 502 LRKVIREKGFKKN 514
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 157/411 (38%), Positives = 253/411 (61%), Gaps = 3/411 (0%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I G+++S S FV M+RA +TY + A G+ L + VH ++
Sbjct: 129 WNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVL 188
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
++G D + N+L+ MY CGD+ A +F+GM + SW S++ G + G+++ AR
Sbjct: 189 ESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARD 248
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F+ MPER+ ++W+A+IDGYV+ G +++AL F M+ +A+E T+VSV+ ACA LGA
Sbjct: 249 LFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGA 308
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L+ G YM G+ + + + +LIDMY+KCG+I+ AL VF + H D W A+I
Sbjct: 309 LETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFK--DMHNRDKFTWTAII 366
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GM 329
GLA++G +E++++F M TPDE+TF+G+L+AC H GLV + FF S+ + +
Sbjct: 367 LGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNI 426
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P HY C++D L RAG++ EA + I +MP++P +++ G+LL C +G ++ E+ +
Sbjct: 427 SPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAE 486
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+L+EL PD+ Y+ LSN+YA RW + R R+ + +G+KK PG S +E
Sbjct: 487 RLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIE 537
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/394 (23%), Positives = 163/394 (41%), Gaps = 61/394 (15%)
Query: 46 KSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVA-----VHAQIAKTGYESDLFI 100
++++ +V+ML G PD T+P L KA+ +A A +HA + K G ES+
Sbjct: 34 EAVAGYVRMLAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVKFGMESNAHA 93
Query: 101 SNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNV 160
++SLI ++YA + + G A
Sbjct: 94 ASSLI--------VMYAARGDGAAARAVLEAACLATGGGAP------------------- 126
Query: 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY 220
V W+ALI G+ + G ++ + F +M + A VT VSVL AC L G + +
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH--------------------- 259
+++ G+ ++ +L+DMYA+CG + A ++F G++
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246
Query: 260 --------QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
+ D + W AMI G G +++LE F MQI + DE T + +++ACA
Sbjct: 247 RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQL 306
Query: 312 GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
G + + +G+ G+ ++D S+ G + A + M + +
Sbjct: 307 GALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAII 366
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGL 405
L +N + ++ + L LQ + +VG+
Sbjct: 367 LGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGV 400
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 123/304 (40%), Gaps = 35/304 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L G +D + + H+ W +I GY + ++ F M V D
Sbjct: 234 ISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADE 293
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + A +L E + + G + D+F+ N+LI MY CG I A +VF
Sbjct: 294 FTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKD 353
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + + +W+A+I G G +EA+ +F
Sbjct: 354 MHNR-------------------------------DKFTWTAIILGLAVNGRGEEAIDMF 382
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAK 242
M +EVT V VL AC H G +D+GR M + +S T+ LID+ +
Sbjct: 383 YRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGR 442
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
G +KEAL + + + IW ++ ++G E EL E +++ + PD T
Sbjct: 443 AGKLKEALDTIDKMPM-KPNSTIWGTLLASCRVYGN-SEIGELAAE-RLLELDPDNSTAY 499
Query: 303 GLLS 306
LLS
Sbjct: 500 ILLS 503
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 6/169 (3%)
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
++WNA+I G G + S F +M +T++ +LSAC G ++ K
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+ + G++P +VD + G + A+ M + AS S+++G + G++D
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWT-SVISGLVRSGQVDR 245
Query: 384 AEIVGKKLVELQPDHDG-RYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
A + L + P+ D + + + Y R+ +A T M+ V+
Sbjct: 246 A----RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVR 290
>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
Length = 637
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 162/371 (43%), Positives = 232/371 (62%), Gaps = 4/371 (1%)
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP-TKMSV 130
A+G +A R + VHA K G DL++ N+ IH YG CGD+ R+VFD +P + V
Sbjct: 141 AAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVV 200
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WN++L GY + G + +AR+VF+ MP R+ VSWS +I GYVK G+ + AL +F+ M G
Sbjct: 201 TWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQG 260
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
KANE +V+ L A A LG L+QG+ + + G+++++ L +LIDMY+KCG++ A
Sbjct: 261 VKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAK 320
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + + DV WN+MI GLA HG ++++LF + G P ITF+G+L+AC+
Sbjct: 321 EVFDAMPRR--DVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSR 378
Query: 311 GGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E +FK + ++ + + EHY CMVD LSRAG V EA E I M + P + G
Sbjct: 379 TGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWG 438
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
++L+ C HG +DL VG KL+EL P HDG YV L+++YA K+WDE R R+ M RG
Sbjct: 439 TILSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRG 498
Query: 430 VKKYPGWSFVE 440
K GWS +E
Sbjct: 499 TSKSAGWSLME 509
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 110/250 (44%), Gaps = 33/250 (13%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W+TVI GY K P ++ +F M+ GV + A+ +L E VH +
Sbjct: 233 WSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVK 292
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ G + + +LI MY CG + A+EVFD MP + +WNSM+ G A G +
Sbjct: 293 RVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGH---- 348
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+A+ +FE+ G +T V VL AC+ G
Sbjct: 349 ---------------------------DAVQLFEKFVSEGFCPTSITFVGVLNACSRTGL 381
Query: 211 LDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
+D+GR + M +K + + ++D+ ++ G ++EA+ + G+ + D ++W +
Sbjct: 382 VDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGM-RIPPDPVLWGTI 440
Query: 270 IGGLAMHGFV 279
+ HG V
Sbjct: 441 LSACKRHGLV 450
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 184/514 (35%), Positives = 270/514 (52%), Gaps = 77/514 (14%)
Query: 2 LSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP 61
L + +LS+ + +S + + P +F WN + R YS+S P ++I+L+ MLR G P
Sbjct: 66 LLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLP 125
Query: 62 DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121
D+ ++PF+ KA RL+ +H+ K G D+F+ N+LI + SCG + AR VF
Sbjct: 126 DNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVF 185
Query: 122 DGMP--TKMSVSWNSMLDGYAKCGEMNMARQVF-------ELMPER-------------- 158
D +P + VSWNSM+ GY + +A +VF L P+
Sbjct: 186 DMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLG 245
Query: 159 -------------------NVVSWSALIDGYVKCGD------------------------ 175
+V S+LID Y KCG
Sbjct: 246 LLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIA 305
Query: 176 -------YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL 228
+KEA+ +F EM+ G A+ T+ VL AC H GAL QGR + Y + +
Sbjct: 306 GYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEM 365
Query: 229 TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288
L + +LI MY+KCG I++AL +FHG+ Q D+ W+A+I GLAM+G ++L LF++
Sbjct: 366 DLNARNALIGMYSKCGDIQKALEIFHGLT--QPDIFSWSAVISGLAMNGESDKALHLFSQ 423
Query: 289 MQIVG-ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRA 346
M+++ I P+EITFLG+L AC HGG V + Y+F ++ + + P EHY CMVD L RA
Sbjct: 424 MEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRA 483
Query: 347 GQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLS 406
+ EA +FI +P++P + SLL C NHG ++LAE K++ EL+P G V LS
Sbjct: 484 NLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLS 543
Query: 407 NVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
NVYA RW + + R+ M T+ +KK PG SFVE
Sbjct: 544 NVYASASRWGDVKRVRKDMATQRIKKQPGCSFVE 577
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/420 (41%), Positives = 252/420 (60%), Gaps = 15/420 (3%)
Query: 34 VIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTG 93
+IRG+S+S+ P+K + L+ +M+ A P+ TY FL R VH ++ G
Sbjct: 1 MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANG 60
Query: 94 YESDLFISNSLIHMYGSCGD---IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
Y +++F+ SL+++Y G + AR VFD + + VSWNS+L GY +CG+++ AR+
Sbjct: 61 YCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARR 120
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F+ MPERNVVSW+ +I G + G K+AL +F EMR G K ++V LV+ L ACA LG
Sbjct: 121 IFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGD 180
Query: 211 LDQGRMMLRYMIDK----GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
L G + Y+ ++ L + L SLI MYA CG I +A VF G++ Q + W
Sbjct: 181 LKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQ--QRSTISW 238
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGIT---PDEITFLGLLSACAHGGLVMEAWYFFKS 323
+MI G A G +E+L +F MQ +G PD ITF+G+L AC+H G V + +FF+
Sbjct: 239 TSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFEC 298
Query: 324 LGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ K+ G+VP+ EHY CMVD LSRAG + EA+ I MP++P ++ G+LL GC H +
Sbjct: 299 MNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAE 358
Query: 383 LAEIVGKKL-VELQPDHDGRY-VGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
LA V +KL +EL+PD Y V LSNVYA KRW + R+ M GV+K G S+V+
Sbjct: 359 LASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQ 418
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 146/305 (47%), Gaps = 42/305 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D + ++ + + W T+I G ++ +++ LF +M RAGV D +
Sbjct: 113 GDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAAL 172
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESD----LFISNSLIHMYGSCGDIVYAREVFDGMPT 126
A L +L +H+ I + + + + ++NSLIHMY SCG I A +VF GM
Sbjct: 173 SACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQ 232
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ ++SW SM+ G+AK G +EAL +F+ M
Sbjct: 233 RSTISWTSMITGFAKQGHA-------------------------------EEALGVFQWM 261
Query: 187 RDVGS---KANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAK 242
+ +G+ + + +T + VLCAC+H G +DQGR M K G+ + ++D+ ++
Sbjct: 262 QRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSR 321
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT-F 301
G + EA + + +D +W A++GG +H + + + ++ + + PD+ +
Sbjct: 322 AGFLDEAHRLIESMPMKPNDA-VWGALLGGCRIHKNAELASHVAQKLAL-ELKPDQAAGY 379
Query: 302 LGLLS 306
L LLS
Sbjct: 380 LVLLS 384
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/456 (38%), Positives = 255/456 (55%), Gaps = 35/456 (7%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
++ + NP + WN +IR Y+ + + +I L+ ML GV P+ TYPF+ KA L
Sbjct: 64 RLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLL 123
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
E V +H+ G ESD+F+ +L+ Y CG +V A+ +F M + V+WN+M+
Sbjct: 124 AIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIA 183
Query: 138 G---YAKCGE-----MNM------------------------ARQVFELMPERNVVSWSA 165
G Y C + M M AR++F++M RN VSWSA
Sbjct: 184 GCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSA 243
Query: 166 LIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG 225
+I GYV KEAL IF M+ G + T++ VL AC+HL AL G Y+I +G
Sbjct: 244 MIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRG 303
Query: 226 LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLEL 285
+ + +LIDMY+KCG I A VF+ +++H D++ WNAMI G +HG E+L L
Sbjct: 304 FATDTLICNALIDMYSKCGKISFAREVFNRMDRH--DIVSWNAMIIGYGIHGLGMEALGL 361
Query: 286 FTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALS 344
F ++ +G+ PD+ITF+ LLS+C+H GLVME +F ++ + +VP+ EH CMVD L
Sbjct: 362 FHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILG 421
Query: 345 RAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVG 404
RAG + EA+ FI MP EP + +LL+ C H ++L E V KK+ L P+ G +V
Sbjct: 422 RAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVL 481
Query: 405 LSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
LSN+Y+ RWD+A R + G+KK PG S++E
Sbjct: 482 LSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIE 517
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 147/298 (49%), Gaps = 21/298 (7%)
Query: 100 ISNSLIHMYGSC---GDIVYAREVFDGMPTKMSVSWNSMLDG----YAKCGEMNMARQVF 152
+ N+ +H+ +C + A+++ S + +S+L Y C ++ +AR++F
Sbjct: 7 VKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66
Query: 153 ELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD 212
+ +P +V+ W+ +I Y G + A+ ++ M +G + N+ T VL AC+ L A++
Sbjct: 67 DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126
Query: 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
G + + GL + + T+L+D YAKCG + EA +F + DV+ WNAMI G
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS--HRDVVAWNAMIAG 184
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPK 332
+++G ++++L +MQ GI P+ T +G+L C ++ A F +G R V
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQ---CLLYARKIFDVMGVRNEVSW 241
Query: 333 SEHYA------CMVDALS--RAGQVTEA-YEFICQMPLEPTASMLGSLLTGCMNHGKL 381
S CM +AL R Q++ + + + P S L +L G +HG L
Sbjct: 242 SAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYL 299
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/424 (38%), Positives = 251/424 (59%), Gaps = 3/424 (0%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V + P + W +IR Y P K++ LF M G++PD + + A G L
Sbjct: 147 QVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLG 206
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+A A+H I K+G E D F+S++LI YG CG + YA F P K V WN+M+
Sbjct: 207 DLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIH 266
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
+ + + +Q+F+ MP+R+VVSW+++I G+ + G Y+EAL F EM G N +T
Sbjct: 267 QSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALT 326
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
L+S L ACA GALD G + Y+ ++ L +SLIDMY+KCG I +A+ +F E
Sbjct: 327 LLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFE--E 384
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+ D+ W +++ GLAMHG +++L F++M+ + PD++T +G+LSACAH GL+ +
Sbjct: 385 STRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQG 444
Query: 318 WYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
W++F+S+ K G+VPK EHY CMVD L R G + EAY+ I MP+E + G+ L+ C
Sbjct: 445 WWYFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACR 504
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436
H ++L E+ ++L+ L P V LSN+YA +WD + R+ ++ +G+KK PG
Sbjct: 505 VHNNVELGEVAARRLLGLDPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGC 564
Query: 437 SFVE 440
S +E
Sbjct: 565 SSIE 568
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 116/413 (28%), Positives = 182/413 (44%), Gaps = 71/413 (17%)
Query: 21 SHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM--LRAGVSPDHLTYPFLAKA--SGRL 76
S L +F WNT+IR ++ + L M LRAG+ P+ T+ +L KA SG+
Sbjct: 47 SRLDCANVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQE 106
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
K VHA + +TG+ F+S +L+ Y +CG +
Sbjct: 107 VKE--GEEVHASVVRTGFACSEFVSGALLGFYVACGLV---------------------- 142
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
RQVF+ M + +V W+ +I YV ++AL +F MR+VG + V
Sbjct: 143 ---------GKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMV 193
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL------ 250
+ +V+ AC LG L + M ++ G+ + + ++LI Y +CG++ A
Sbjct: 194 AISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQET 253
Query: 251 ----IVFHGVEKHQS-------------------DVLIWNAMIGGLAMHGFVKESLELFT 287
IV HQS DV+ WN+MIGG A G +E+L F
Sbjct: 254 PMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFH 313
Query: 288 EMQIVGITPDEITFLGLLSACA-HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA 346
EM+ G++P+ +T L LSACA HG L AW + K M + ++D S+
Sbjct: 314 EMEFSGVSPNALTLLSTLSACASHGALDTGAW-IHAYVDKNDMNRDGSLDSSLIDMYSKC 372
Query: 347 GQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPD 397
G + +A + I + S++ G HG+ + A K+ E +QPD
Sbjct: 373 GDIDKAVQ-IFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPD 424
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 131/320 (40%), Gaps = 66/320 (20%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIR-------------------------------GYS 39
G++DY+ + I WNT+I G++
Sbjct: 241 GSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFA 300
Query: 40 KSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
+ ++++ F +M +GVSP+ LT A + +HA + K D
Sbjct: 301 RIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGS 360
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
+ +SLI MY CGDI A ++ FE R+
Sbjct: 361 LDSSLIDMYSKCGDIDKAVQI-------------------------------FEESTRRD 389
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
+ +W++++ G G ++AL F +M++ + ++VT+V VL ACAH G LDQG +
Sbjct: 390 LFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQ 449
Query: 220 YMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGF 278
M GL + ++D+ + G +KEA + G+ +++ IW A + +H
Sbjct: 450 SMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGMPMEANEI-IWGAFLSACRVHNN 508
Query: 279 VKESLELFTEMQIVGITPDE 298
V+ L +++G+ P +
Sbjct: 509 VE--LGEVAARRLLGLDPRD 526
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 181/503 (35%), Positives = 268/503 (53%), Gaps = 66/503 (13%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+ + + ++ Y+ + + + +WNT+I+ Y +++ + I LF +++ +
Sbjct: 51 LLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL- 109
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+ T P + K RL + +H K G+ SD+F+ SL++MY CG+I AR+V
Sbjct: 110 PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKV 169
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER---------------------- 158
FDGM K V WNS++DGYA+CGE+++A Q+FE MPER
Sbjct: 170 FDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESAR 229
Query: 159 ---------NVVSWSALIDGYVKCGDYKEALVIFEEMR---------------------- 187
N+VSW+A+I+GY+K GD+ AL +F +M
Sbjct: 230 KLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMD 289
Query: 188 ---------DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
+GS+ + TLVSVL A + L L +GR + YM G L L TSLI+
Sbjct: 290 AVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIE 349
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MYAKCG I+ AL VF ++K + V W A+I GL +HG +L LF EM G+ P+
Sbjct: 350 MYAKCGCIESALTVFRAIQKKK--VGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNA 407
Query: 299 ITFLGLLSACAHGGLVMEA-WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
I F+G+L+AC H GLV + YF + + + P EHY C+VD L RAG + EA I
Sbjct: 408 IIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIE 467
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
MP+ P + SLL G NHGK+D+ E ++++E+ P+ G Y+ LSN+YA W++
Sbjct: 468 NMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEK 527
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
RE M RG +K PG S VE
Sbjct: 528 VSHVREMMYKRGFRKDPGCSSVE 550
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 175/435 (40%), Positives = 262/435 (60%), Gaps = 7/435 (1%)
Query: 11 GNIDYSCKVLSH-LSNPRIFYWNTVIRGYSKSKNPNKSISLFVK--MLRAGVSPDHLTYP 67
GN+ +S + +H LS P IF +N +++ +S+ + +IS F +L +PD T+
Sbjct: 72 GNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFT 131
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ KA LA+ VH + K G ES+LF+ NSL+ +Y G A+++FD M +
Sbjct: 132 SVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVR 191
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
VSWN+++ GY G ++ AR VF+ M E+N+VSWS +I GY + Y +A+ +F +M+
Sbjct: 192 DVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQ 251
Query: 188 DVGSKA-NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
G A N+VTLVSVL ACAHLGALD G+ + R++ + + L L +L DMYAKCG +
Sbjct: 252 HEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCV 311
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
EA VFH E H+ DV+ W+ +I GLAM+G+ E+ F EM G+ P++I+F+GLL+
Sbjct: 312 LEAKGVFH--EMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLT 369
Query: 307 ACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC H GLV + +F + + G+ PK EHY C+VD LSRAG++ +A I MP++P
Sbjct: 370 ACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNV 429
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
+ G+LL GC + + E V +++EL +H G V L+NVYA R D+A + R M
Sbjct: 430 IVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRM 489
Query: 426 ETRGVKKYPGWSFVE 440
K PG S++E
Sbjct: 490 RDNKSMKTPGCSWIE 504
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 125/274 (45%), Gaps = 34/274 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDH 63
S + G +D + V + + W+T+I GY++++ +I LF +M G++P+
Sbjct: 201 SGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPND 260
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T + A L +L +H I + E LF+ N+L MY CG ++ A+ VF
Sbjct: 261 VTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHE 320
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + +SW+ ++ G A G N EA F
Sbjct: 321 MHERDVISWSIIIMGLAMYGYAN-------------------------------EAFNFF 349
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAK 242
EM + G + N+++ + +L AC H G +D+G M G++ + ++D+ ++
Sbjct: 350 AEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSR 409
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
G + +A + + + Q +V++W A++GG ++
Sbjct: 410 AGRLDQAESLINSMPM-QPNVIVWGALLGGCRIY 442
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 170/434 (39%), Positives = 264/434 (60%), Gaps = 6/434 (1%)
Query: 9 YLGNIDYSC--KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
Y+ N + C ++ +S+ + +NT+I G++K N + LF M G+ PD T
Sbjct: 173 YVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTM 232
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
L G+L + +L +VHAQI K+ S+L + N+L+ MY C ++ AR+VFDG
Sbjct: 233 LGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPME 292
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
K +VSWN+++ GYAK GE+ +A +F +P R++VSW++LI GY + GDY +F M
Sbjct: 293 KDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRM 352
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
K ++VT+V+++ A A +GALDQGR + + + ++LIDMY KCG+I
Sbjct: 353 FAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSI 412
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ A ++F+ + + DV W MI G A HGF ++LELF+ MQ P+++TF+ +L+
Sbjct: 413 ERAFVIFNQIP--EKDVTTWTTMITGFAFHGFGNKALELFSVMQ-AETKPNDVTFVSVLA 469
Query: 307 ACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC+H GLV E F S+ KR + P EHY C+VD L R+G++ +A I +MP+EP+
Sbjct: 470 ACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSR 529
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
S+ G++L+ C H ++LAE +L++L+P+ +G Y+ LSNVYA RW + + RE M
Sbjct: 530 SIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVM 589
Query: 426 ETRGVKKYPGWSFV 439
+RGVKK G S V
Sbjct: 590 NSRGVKKIAGCSSV 603
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 111/428 (25%), Positives = 193/428 (45%), Gaps = 81/428 (18%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSN-PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
+L FSA+S+ N++ + + +H + P ++ +NT+I G+ S K+ +++ ML+ G
Sbjct: 69 LLFFSAVSHPENLELAILLFNHFTPYPNLYIFNTMILGFPFSNE--KAFTIYRSMLQNGT 126
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYES-DLFISNSLIHMYGSCGDIVYAR 118
PD T+ +L + + +A+ + +H G S + ++ NSLI Y G AR
Sbjct: 127 YPDRQTFLYLLQTTKFVAEVK---QIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECAR 183
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
++FD M + VS+N+M+ G+AK G N++
Sbjct: 184 QLFDEMSDRNVVSYNTMILGFAKVG---------------NILG---------------- 212
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL-SLTLPLQTSLI 237
L +F +MR G + ++ T++ +L C LG G+ + I+K + S L L +L+
Sbjct: 213 ILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGK-SVHAQIEKSIGSSNLILYNALL 271
Query: 238 DMYAKCGAIKEALIVFHG-VEKH----------------------------QSDVLIWNA 268
DMY KC +K A VF G +EK D++ WN+
Sbjct: 272 DMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNS 331
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328
+I G A +G LFT M + PD++T + L+SA A G + + + K
Sbjct: 332 LISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVK-- 389
Query: 329 MVPKSEHY--ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
M+ K E + + ++D + G + A+ Q+P E + +++TG HG
Sbjct: 390 MLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIP-EKDVTTWTTMITGFAFHG------- 441
Query: 387 VGKKLVEL 394
G K +EL
Sbjct: 442 FGNKALEL 449
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 172/441 (39%), Positives = 255/441 (57%), Gaps = 8/441 (1%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNK---SISLFVKMLRAGVSPD 62
A S G++ Y+ V +H P + NT+IR S N +I+++ K PD
Sbjct: 56 ACSNAGHLRYAYSVFTHQPFPNTYLHNTMIRALSLVDERNAHSIAITVYRKFWAFCAKPD 115
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
T+PF+ K R++ VH Q G++S + + LI MY SCG + AR+VFD
Sbjct: 116 TFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMYSSCGGLGDARKVFD 175
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDYKEAL 180
M + WN++L GY K GEM+ AR + E+MP RN VSW+ +I GY + G EA+
Sbjct: 176 EMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAI 235
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F+ M +EVTL++VL ACA LG+L+ G + Y+ +G++ + L ++IDMY
Sbjct: 236 EVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMY 295
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AK G I +AL VF V ++ +V+ W +I GLA HG E+L +F M G+ P+++T
Sbjct: 296 AKSGNITKALEVFESV--NERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVT 353
Query: 301 FLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+ +LSAC+H G V FF S+ K G+ P EHY CM+D L RAG++ EA E I M
Sbjct: 354 FIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKSM 413
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P E A++ GSLL H +D+ E +L++L+P++ G Y+ L+N+Y+ RWDE+R
Sbjct: 414 PFESNAAIWGSLLAASNVHHDIDVGERALYQLIKLEPNNSGNYMLLANLYSNLGRWDESR 473
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R+ M+ GVKK G S +E
Sbjct: 474 MMRKMMKGIGVKKLAGESSIE 494
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 170/434 (39%), Positives = 264/434 (60%), Gaps = 6/434 (1%)
Query: 9 YLGNIDYSC--KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
Y+ N + C ++ +S+ + +NT+I G++K N + LF M G+ PD T
Sbjct: 108 YVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTM 167
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
L G+L + +L +VHAQI K+ S+L + N+L+ MY C ++ AR+VFDG
Sbjct: 168 LGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPME 227
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
K +VSWN+++ GYAK GE+ +A +F +P R++VSW++LI GY + GDY +F M
Sbjct: 228 KDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRM 287
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
K ++VT+V+++ A A +GALDQGR + + + ++LIDMY KCG+I
Sbjct: 288 FAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSI 347
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ A ++F+ + + DV W MI G A HGF ++LELF+ MQ P+++TF+ +L+
Sbjct: 348 ERAFVIFNQIP--EKDVTTWTTMITGFAFHGFGNKALELFSVMQ-AETKPNDVTFVSVLA 404
Query: 307 ACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC+H GLV E F S+ KR + P EHY C+VD L R+G++ +A I +MP+EP+
Sbjct: 405 ACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSR 464
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
S+ G++L+ C H ++LAE +L++L+P+ +G Y+ LSNVYA RW + + RE M
Sbjct: 465 SIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVM 524
Query: 426 ETRGVKKYPGWSFV 439
+RGVKK G S V
Sbjct: 525 NSRGVKKIAGCSSV 538
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 111/428 (25%), Positives = 193/428 (45%), Gaps = 81/428 (18%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSN-PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
+L FSA+S+ N++ + + +H + P ++ +NT+I G+ S K+ +++ ML+ G
Sbjct: 4 LLFFSAVSHPENLELAILLFNHFTPYPNLYIFNTMILGFPFSNE--KAFTIYRSMLQNGT 61
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYES-DLFISNSLIHMYGSCGDIVYAR 118
PD T+ +L + + +A+ + +H G S + ++ NSLI Y G AR
Sbjct: 62 YPDRQTFLYLLQTTKFVAEVK---QIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECAR 118
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
++FD M + VS+N+M+ G+AK G N++
Sbjct: 119 QLFDEMSDRNVVSYNTMILGFAKVG---------------NILG---------------- 147
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL-SLTLPLQTSLI 237
L +F +MR G + ++ T++ +L C LG G+ + I+K + S L L +L+
Sbjct: 148 ILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGK-SVHAQIEKSIGSSNLILYNALL 206
Query: 238 DMYAKCGAIKEALIVFHG-VEKH----------------------------QSDVLIWNA 268
DMY KC +K A VF G +EK D++ WN+
Sbjct: 207 DMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNS 266
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328
+I G A +G LFT M + PD++T + L+SA A G + + + K
Sbjct: 267 LISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVK-- 324
Query: 329 MVPKSEHY--ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
M+ K E + + ++D + G + A+ Q+P E + +++TG HG
Sbjct: 325 MLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIP-EKDVTTWTTMITGFAFHG------- 376
Query: 387 VGKKLVEL 394
G K +EL
Sbjct: 377 FGNKALEL 384
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 173/437 (39%), Positives = 254/437 (58%), Gaps = 5/437 (1%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML--RAGVSPDHL 64
LS G ++ + ++ + WNT+I GY + NP +++ LF +M+ A V PD +
Sbjct: 170 LSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEV 229
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T G++ EL +H + G + + N+L+ MY CG + A+ VF+ +
Sbjct: 230 TMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERI 289
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ VSW +M+ G+AK G M+ AR+VF+ MPER+V W+AL+ GYV+C KEAL +F
Sbjct: 290 EHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFH 349
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
EM++ +E+T+V++L AC+ LGAL+ G + RY+ L ++ L TSLIDMYAKCG
Sbjct: 350 EMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCG 409
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
I++A+ +F E + + L W AMI GLA HG E++E F M +G PDEITF+G+
Sbjct: 410 NIEKAIHIFK--EIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGV 467
Query: 305 LSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LSAC H GLV E FF + K + K +HY+CM+D L RAG + EA + + MP+EP
Sbjct: 468 LSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEP 527
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
A + G++ C G + L E KLVE+ P G YV L+N+YA +A R
Sbjct: 528 DAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRA 587
Query: 424 AMETRGVKKYPGWSFVE 440
M GV+K PG S +E
Sbjct: 588 MMRHLGVEKVPGCSCIE 604
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 118/440 (26%), Positives = 198/440 (45%), Gaps = 75/440 (17%)
Query: 31 WNTVIRGYSKSKNPNKS--------ISLFVKMLRAGVS-PDHLTYPFLAKASGRLAKREL 81
+N IR S S + ++ + L+ +LR+G + PDHLT+PFL KA RL +
Sbjct: 84 YNAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGY 143
Query: 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
A A + + G +SD+F+ N+ H G + AR +FD P + VSWN+++ G
Sbjct: 144 GDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGG--- 200
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGSKANEVTLV 199
YV+ G+ EAL +F M D + +EVT++
Sbjct: 201 ----------------------------YVRRGNPAEALELFWRMVAEDAVVRPDEVTMI 232
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
+ + C + L+ GR + ++ G+S T+ L +L+DMY KCG+++ A VF +E
Sbjct: 233 AAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHR 292
Query: 260 -----------------------------QSDVLIWNAMIGGLAMHGFVKESLELFTEMQ 290
+ DV WNA++ G KE+L LF EMQ
Sbjct: 293 TVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQ 352
Query: 291 IVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVT 350
+ PDEIT + LL+AC+ G + + + + K +V ++D ++ G +
Sbjct: 353 EASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIE 412
Query: 351 EAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVEL--QPDHDGRYVGLSNV 408
+A ++P E A +++ G NHG + A + ++EL +PD + ++G+ +
Sbjct: 413 KAIHIFKEIP-EKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPD-EITFIGVLSA 470
Query: 409 YAIFKRWDEARTTREAMETR 428
E R MET+
Sbjct: 471 CCHAGLVKEGREFFSLMETK 490
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 172/433 (39%), Positives = 263/433 (60%), Gaps = 5/433 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + ++ ++ S + W T+I GY+++ +++I+LF ML + V P+ +T L
Sbjct: 201 GCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALL 260
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + E+ +H I + L + N+++ MY CG + ARE+F+ M +
Sbjct: 261 SACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVF 320
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD-V 189
SW S+L+GYAK G++ AR++F+ MPERN+VSW+A+I GY + EAL +F M D V
Sbjct: 321 SWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVV 380
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKE 248
G E TLV VL A LG L+ G+ + ++K G+ ++L L+ +++DMYAKCG+I
Sbjct: 381 GLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDA 440
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A +FH + + +++ WN+MI A +G K++L LF +M G+ PD ITF+G+LSAC
Sbjct: 441 AAKLFHSMP--EKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSAC 498
Query: 309 AHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
++GG V E F+S+ G+ PK EHYACMVD LSR G + EAYE I +MP+E +
Sbjct: 499 SYGGFVSEGQAHFESMENCFGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEASEGG 558
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
G+LL C HG +++A++ G+KL+EL P+ G Y L+N+ A K+W + R R M
Sbjct: 559 WGALLDACRKHGNVEMAKLAGEKLLELDPEDSGIYSLLANICADGKKWKDVRMVRRMMRE 618
Query: 428 RGVKKYPGWSFVE 440
RGVKK PG S +E
Sbjct: 619 RGVKKVPGHSLIE 631
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/460 (27%), Positives = 218/460 (47%), Gaps = 66/460 (14%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+F ALS G+I Y+ + P F+WNT+I+GY K+ +P+ S F +M+R
Sbjct: 90 LLAFCALSDSGDIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAE 149
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
D ++ F KA G+ A++ + +AVH+ I K G++SDLF+ N LI Y G + +AR++
Sbjct: 150 FDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQM 209
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD K V+W +M++GYA RN +W EA+
Sbjct: 210 FDESSVKDVVTWTTMINGYA-----------------RN--NW------------LDEAI 238
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F M K NEVT++++L AC+ G + G+ + ++ K ++ +L L +++DMY
Sbjct: 239 ALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMY 298
Query: 241 AKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAMIG 271
KCG + A +F+ +E+ + +++ WNAMI
Sbjct: 299 VKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIA 358
Query: 272 GLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGM 329
G + + E+LELF M +VG+ P E T + +LSA G L M + K G+
Sbjct: 359 GYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGI 418
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
++D ++ G + A + MP E S+++ ++G A +
Sbjct: 419 QVSLILKNAVMDMYAKCGSIDAAAKLFHSMP-EKNLVSWNSMISAYASYGHAKKALTLFD 477
Query: 390 KLV--ELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
+++ L+PDH ++G+ + + E + E+ME
Sbjct: 478 QMIGSGLKPDHI-TFIGVLSACSYGGFVSEGQAHFESMEN 516
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 171/422 (40%), Positives = 255/422 (60%), Gaps = 6/422 (1%)
Query: 21 SHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFLAKASGRLAKR 79
SH+ + + WNT+I GY + P +++ +F +M+ G V+PD +T + S +L
Sbjct: 181 SHVRD--LVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDL 238
Query: 80 ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY 139
EL +H + G + + N ++ MY CGD+ A+ VF+G+ K VSW +M+ GY
Sbjct: 239 ELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGY 298
Query: 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLV 199
A+ G M+ AR+VF+ MPER+V W+AL+ GYV+C KEAL +F +M++ + +++T+V
Sbjct: 299 AQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMV 358
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
++L AC+ LGAL+ G + Y+ + +SL++ L T+L+DMY+KCG I++A+ VF E
Sbjct: 359 NLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFK--EIP 416
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
+ + L W AMI GLA HG +++ F M +G+ PDEITF+G+LSAC H GLV E
Sbjct: 417 EKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQE 476
Query: 320 FFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNH 378
FF + K + K +HY+CMVD L RAG + EA + MP+EP A + G+L C H
Sbjct: 477 FFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMH 536
Query: 379 GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSF 438
G + L E KLVEL P G YV L+N+YA +A R M GV+K PG S
Sbjct: 537 GNITLGEKAAMKLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSC 596
Query: 439 VE 440
+E
Sbjct: 597 IE 598
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 185/401 (46%), Gaps = 66/401 (16%)
Query: 31 WNTVIRGYSKSKNP---NKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+N +R S + + + L+ +LR+ PDHLT+PFL KA RL +R AV
Sbjct: 86 YNAALRALSLCTDRGLVTRCLPLYCSLLRSA-RPDHLTFPFLLKACARLQERNYGNAVLG 144
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
+ G+ +D+F+ N+ +H C + AR++FDG + VSWN+++ GY + G +
Sbjct: 145 NVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRG---V 201
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
R+ E+ W + DG V +EVT++ V+ A
Sbjct: 202 PREALEMF-------WRMVGDGAV--------------------TPDEVTMIGVVSGSAQ 234
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH-------- 259
L L+ GR + Y+ G+ T+ L ++DMY KCG ++ A VF G++K
Sbjct: 235 LRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTM 294
Query: 260 ---------------------QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
+ DV WNA++ G KE+L LF +MQ + PD+
Sbjct: 295 IVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDD 354
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
IT + LLSAC+ G + + + +R + +VD S+ G + +A +
Sbjct: 355 ITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKE 414
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPD 397
+P E A ++++G NHG D+A ++++E LQPD
Sbjct: 415 IP-EKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPD 454
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 134/328 (40%), Gaps = 66/328 (20%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYS------------------------------- 39
G+++ + V + I W T+I GY+
Sbjct: 271 GDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYV 330
Query: 40 KSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
+ K +++ LF M A V PD +T L A +L E+ + VH I + +
Sbjct: 331 QCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVM 390
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
+ +L+ MY CG+I A VF +P K +++W +M+ G A G ++A + F+ M E
Sbjct: 391 LGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIE-- 448
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
+G + +E+T + VL AC H G + +G+
Sbjct: 449 -----------------------------LGLQPDEITFIGVLSACCHAGLVKEGQEFFS 479
Query: 220 YMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGF 278
M+ K L + + ++D+ + G + EA + + + + D ++W A+ MHG
Sbjct: 480 LMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPM-EPDAVVWGALFFACRMHGN 538
Query: 279 VKESLELFTEMQIVGITPDEITFLGLLS 306
+ +L M++V + P + LL+
Sbjct: 539 I--TLGEKAAMKLVELDPGDSGIYVLLA 564
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 39/220 (17%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S GNI+ + +V + W +I G + + + +I F +M+ G+ PD +T+
Sbjct: 400 SKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFI 459
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ L+ HA + K G E F S ++ Y + K
Sbjct: 460 GV-----------LSACCHAGLVKEGQE---FFS-LMVSKY--------------HLERK 490
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMP-ERNVVSWSAL-----IDGYVKCGDYKEALV 181
M ++ M+D + G ++ A + MP E + V W AL + G + G+ K A+
Sbjct: 491 MK-HYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNITLGE-KAAMK 548
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
+ E D G V L ++ D+ R+M+R++
Sbjct: 549 LVE--LDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHL 586
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 166/415 (40%), Positives = 252/415 (60%), Gaps = 8/415 (1%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA----SGRLAKRELAVAVHA 87
+ +IR ++ S P ++ L+ ++RAG+ P T P L K+ R LA+AVHA
Sbjct: 57 DALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAVHA 116
Query: 88 QIAKTGYESDLFISNSLIHMY-GSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
+ G L ++N+LI ++ G G + A + + ++N+++ +A+ G +
Sbjct: 117 HAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVA 176
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
AR +F+ MPERN VSWSA+++GYV+ GD +EAL +F +M+ G + ++ LV VL ACA
Sbjct: 177 DARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACA 236
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
LGAL+QG+ + Y+ + +T+ L T+L+DMYAKCG ++ + VF G++ +VL W
Sbjct: 237 QLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMK--DKNVLAW 294
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-G 325
MI GLAMHG +SL LF++M+ G+ PD+I F+G L AC H GLV + F S+
Sbjct: 295 TTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVN 354
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
G+ PK EHY CMVD L+R G ++EA + + +MP++P A + G+L+ GC H ++LAE
Sbjct: 355 NYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAE 414
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
V K +EL+PD G YV L N+Y+ R AR R M +GV+K PG S VE
Sbjct: 415 YVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVE 469
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 114/253 (45%), Gaps = 37/253 (14%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W+ ++ GY ++ + +++ +F +M GV PD + A +L E VH +
Sbjct: 193 WSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLK 252
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+F+ +L+ MY CG++ EVF+GM K ++W +M+ G A G +
Sbjct: 253 ANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGS---- 308
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
++L +F +M G K +++ + LCAC H G
Sbjct: 309 ---------------------------DSLTLFSQMESSGVKPDDIAFIGALCACTHTGL 341
Query: 211 LDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK--HQSDVLIWN 267
+D+GR + M++ G+ + ++D+ A+ G + EA + VEK + D LIW
Sbjct: 342 VDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDM---VEKMPMKPDALIWG 398
Query: 268 AMIGGLAMHGFVK 280
A++ G H V+
Sbjct: 399 ALMAGCRFHKNVE 411
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 31/160 (19%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + +V + + + W T+I+G + + S++LF +M +GV PD + +
Sbjct: 274 GEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIG-- 331
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
L H + G E LF NS+++ YG I +
Sbjct: 332 ---------ALCACTHTGLVDKGRE--LF--NSMVNNYGIKPKIEH-------------- 364
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPER-NVVSWSALIDG 169
+ M+D A+ G ++ AR + E MP + + + W AL+ G
Sbjct: 365 -YGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAG 403
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 172/415 (41%), Positives = 252/415 (60%), Gaps = 8/415 (1%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA----SGRLAKRELAVAVHA 87
N +IR + S P+ ++ L+ +LRAG P T P L K+ R LA+AVHA
Sbjct: 175 NALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVHA 234
Query: 88 QIAKTGYESDLFISNSLIHMY-GSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
K G L +SN+LI ++ G G + A + + + ++N+++ YA+ G +
Sbjct: 235 HAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVT 294
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
AR +F+ MP RN VSWSA+++GYV+ GD +EAL +F M+ G + ++ LV VL ACA
Sbjct: 295 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACA 354
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
LG L+QG+ + Y+ + +T+ L T+L+DMYAKCG ++ A+ VF ++ + +VL W
Sbjct: 355 QLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMK--EKNVLAW 412
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
MI GLAMHG E+LELF++M+ +G+ PD+I F+G L AC H GLV + F S+ +
Sbjct: 413 TTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVR 472
Query: 327 R-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
+ G+ PK EHY CMVD L+R G + EA E + +MP++P A + G+L+ GC H ++LAE
Sbjct: 473 KYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAE 532
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
V K +EL+PD G YV L N+YA R AR R M +GV K PG S VE
Sbjct: 533 YVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVE 587
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 129/298 (43%), Gaps = 39/298 (13%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
+A + G + + + + W+ ++ GY ++ + +++ LF +M GV PD
Sbjct: 284 ITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDD 343
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+ A +L E VH + +F+ +L+ MY CG++ A EVF
Sbjct: 344 TVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKV 403
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M K ++W +M+ G A G + EAL +F
Sbjct: 404 MKEKNVLAWTTMIKGLAMHGRGS-------------------------------EALELF 432
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAK 242
+M +G K +++ + LCAC H G +D+GR + M+ K G+ + ++D+ A+
Sbjct: 433 SQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLAR 492
Query: 243 CGAIKEALIVFHGVEK--HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
G + EA + VEK + D LIW A++ G H V+ L + + + PD+
Sbjct: 493 NGLLNEAREM---VEKMPMKPDALIWGALMAGCRFHKNVE--LAEYVVKHWIELEPDK 545
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 172/415 (41%), Positives = 252/415 (60%), Gaps = 8/415 (1%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA----SGRLAKRELAVAVHA 87
N +IR + S P+ ++ L+ +LRAG P T P L K+ R LA+AVHA
Sbjct: 175 NALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVHA 234
Query: 88 QIAKTGYESDLFISNSLIHMY-GSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
K G L +SN+LI ++ G G + A + + + ++N+++ YA+ G +
Sbjct: 235 HAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVT 294
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
AR +F+ MP RN VSWSA+++GYV+ GD +EAL +F M+ G + ++ LV VL ACA
Sbjct: 295 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACA 354
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
LG L+QG+ + Y+ + +T+ L T+L+DMYAKCG ++ A+ VF ++ + +VL W
Sbjct: 355 QLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMK--EKNVLAW 412
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
MI GLAMHG E+LELF++M+ +G+ PD+I F+G L AC H GLV + F S+ +
Sbjct: 413 TTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVR 472
Query: 327 R-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
+ G+ PK EHY CMVD L+R G + EA E + +MP++P A + G+L+ GC H ++LAE
Sbjct: 473 KYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAE 532
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
V K +EL+PD G YV L N+YA R AR R M +GV K PG S VE
Sbjct: 533 YVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVE 587
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 39/271 (14%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W+ ++ GY ++ + +++ LF +M GV PD + A +L E VH +
Sbjct: 311 WSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLK 370
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+F+ +L+ MY CG++ A EVF M K ++W +M+ G A G +
Sbjct: 371 ANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGS---- 426
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
EAL +F +M +G K +++ + LCAC H G
Sbjct: 427 ---------------------------EALELFSQMERLGVKPDDIAFIGALCACTHTGL 459
Query: 211 LDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK--HQSDVLIWN 267
+D+GR + M+ K G+ + ++D+ A+ G + EA + VEK + D LIW
Sbjct: 460 VDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREM---VEKMPMKPDALIWG 516
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
A++ G H V+ L + + + PD+
Sbjct: 517 ALMAGCRFHKNVE--LAEYVVKHWIELEPDK 545
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 41/165 (24%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + + +V + + W T+I+G + ++++ LF +M R GV PD + +
Sbjct: 392 GEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAF---- 447
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
L H + G RE+FD M K +
Sbjct: 448 -------IGALCACTHTGLVDKG------------------------RELFDSMVRKYGI 476
Query: 131 S-----WNSMLDGYAKCGEMNMARQVFELMPER-NVVSWSALIDG 169
+ M+D A+ G +N AR++ E MP + + + W AL+ G
Sbjct: 477 KPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAG 521
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 169/446 (37%), Positives = 260/446 (58%), Gaps = 11/446 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+ F+A+S G++ Y+ + + P F++NT+IR +S S P+ S F +M R ++
Sbjct: 45 LFRFAAVSPFGDLSYAHNMFDQMPQPTTFFYNTLIRAHSHSTTPSFSSLFFNRMRRNSIA 104
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD ++ FL K+ R L +H + K G+ L + N+LIH+Y G + AR+V
Sbjct: 105 PDEFSFTFLLKS--RSFTMPLVHDIHGAVFKFGFCRHLHVQNALIHLYAVGGVTISARKV 162
Query: 121 FD-----GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
F+ G+ + VSW+ +L +AK GE+++AR+VF+ MPER+VVSW+ ++ Y K
Sbjct: 163 FEDAVRVGLDVDI-VSWSGLLVAHAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKR 221
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
E L +F+EMR G +EVT++SV+ ACA LG + GRM+ +++ + G + L S
Sbjct: 222 PHETLDLFQEMRLAGVWPDEVTVLSVISACAELGDAEMGRMVHKFVEENGFGWMVALCNS 281
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
LIDMY KCG ++EA VF ++ ++ WNAM+ A HG+ +++ LF M G+
Sbjct: 282 LIDMYGKCGCLEEAWQVFDRTKR--KSLITWNAMMMVCANHGYAEDAFRLFEGMIGSGVV 339
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYE 354
PD +T L LL A AH G V E F+S+ + G+ P+ EHY +VD L R+G++ EAY
Sbjct: 340 PDGVTILALLVAYAHKGFVDEGIRLFESMQRDYGVEPRIEHYGAVVDMLGRSGRLQEAYN 399
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414
+ MP+ + G+LL C HG + + E V KKL+EL+PD G Y+ L ++Y R
Sbjct: 400 LLTSMPIPSNDVIWGALLGACRIHGDVGMGERVIKKLLELKPDEGGYYILLRDIYVAAGR 459
Query: 415 WDEARTTREAMETRGVKKYPGWSFVE 440
EA R+AM G +K PG S+VE
Sbjct: 460 TAEANEMRQAMLASGARKNPGCSWVE 485
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 161/419 (38%), Positives = 244/419 (58%), Gaps = 3/419 (0%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82
+S+ + WN +I GYS++ + + + L+ +M +G PD + + A
Sbjct: 177 MSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYG 236
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
A+H I G+ I SL++MY +CG + AREV+D +P+K V +ML GYAK
Sbjct: 237 KAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKL 296
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
G + AR +F+ M E+++V WSA+I GY + EAL +F EM+ +++T++SV+
Sbjct: 297 GMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVI 356
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
ACA++GAL Q + + Y G TLP+ +LIDMYAKCG + +A VF + + +
Sbjct: 357 SACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPR--KN 414
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
V+ W++MI AMHG ++ LF M+ I P+ +TF+G+L AC+H GLV E FF
Sbjct: 415 VISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFS 474
Query: 323 SL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
S+ + + P+ EHY CMVD RA + +A E I MP P + GSL++ C NHG++
Sbjct: 475 SMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEI 534
Query: 382 DLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+L E +L+EL+PDHDG V LSN+YA KRWD+ R+ M+ +GV K S +E
Sbjct: 535 ELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIE 593
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 201/418 (48%), Gaps = 62/418 (14%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+DY+ + SH+ NP + N ++R +S+ P ++SL++ + R G D ++P L KA
Sbjct: 65 LDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKA 124
Query: 73 SGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
+L+ L + +H +K G + +D FI ++LI MY +CG I+ AR +FD M + V+
Sbjct: 125 VSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVT 184
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
WN M+DGY++ Y L ++EEM+ G+
Sbjct: 185 WNIMIDGYSQNAH-------------------------------YDHVLKLYEEMKTSGT 213
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ + + L +VL ACAH G L G+ + +++ D G + +QTSL++MYA CGA+ A
Sbjct: 214 EPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLARE 273
Query: 252 VFHGV-EKH----------------------------QSDVLIWNAMIGGLAMHGFVKES 282
V+ + KH + D++ W+AMI G A E+
Sbjct: 274 VYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEA 333
Query: 283 LELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDA 342
L+LF EMQ I PD+IT L ++SACA+ G +++A + K G ++D
Sbjct: 334 LQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDM 393
Query: 343 LSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400
++ G + +A E MP + S S++ HG D A + ++ E + +G
Sbjct: 394 YAKCGNLVKAREVFENMPRKNVIS-WSSMINAFAMHGDADSAIALFHRMKEQNIEPNG 450
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 145/304 (47%), Gaps = 35/304 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S + LG + + + + + W+ +I GY++S P +++ LF +M R + PD
Sbjct: 290 LSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQ 349
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T + A + A +H K G+ L I+N+LI MY CG++V AREVF+
Sbjct: 350 ITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFEN 409
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
MP K +SW+SM++ +A G+ + A +F M E+N+
Sbjct: 410 MPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNI----------------------- 446
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG-LSLTLPLQTSLIDMYAK 242
+ N VT + VL AC+H G +++G+ MI++ +S ++D+Y +
Sbjct: 447 --------EPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCR 498
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
+++A+ + + +V+IW +++ HG ++ L F +++ + PD L
Sbjct: 499 ANHLRKAMELIETM-PFPPNVIIWGSLMSACQNHGEIE--LGEFAATRLLELEPDHDGAL 555
Query: 303 GLLS 306
+LS
Sbjct: 556 VVLS 559
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 172/476 (36%), Positives = 271/476 (56%), Gaps = 38/476 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPR-IFYWNTVIRGYSKSKNPNKSISLFVKML--RA 57
+LSF++ LG+++Y+ K+ + PR F + T+I+ Y+ NP ++ + + +ML +
Sbjct: 70 LLSFASFDNLGSLNYAQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQR 129
Query: 58 GVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI-VY 116
V P+ T+ ++ A + HAQ+ K +E + NSL+ YG G++ +
Sbjct: 130 YVYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIV 189
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER------------------ 158
R VFD + VSWN +++GY K G+++ AR++F+ MPER
Sbjct: 190 VRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGYADAGFL 249
Query: 159 -------------NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
N+VSWSALI GY++ G Y +AL +F+EM+ K +EV + ++L AC
Sbjct: 250 SEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSAC 309
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
A LGALDQGR + Y+ G+ + L T+LIDMY+KCG I A VF E V +
Sbjct: 310 ARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQ--ETGDKKVFV 367
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF-KSL 324
W++MIGGLAMH F ++++ELF +M GI P EIT++ +L+AC H GLV F + +
Sbjct: 368 WSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRMV 427
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
+ P+ +HY C+VD L RAG + +A+ + MP++ ++ +LL+ C H ++L
Sbjct: 428 ENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKLHRNVELG 487
Query: 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
E VG+ L++++P +D YV SNVYA RWD + R M+ RG++K PG S +E
Sbjct: 488 EQVGRILIKMEPQNDMNYVLFSNVYAAVNRWDISGKLRREMKVRGMQKNPGCSSIE 543
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 168/433 (38%), Positives = 259/433 (59%), Gaps = 6/433 (1%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR--AGVSPDHLTYPFL 69
N+ ++ + + L NP +F WN +I+ + +++ F + L + +P+ Y L
Sbjct: 60 NLYHAQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSL 119
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA L + VHA + K+G ++++ + SL+ MY + A +VFD MP +
Sbjct: 120 IKACAGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDV 179
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSWN+M+ GY CG++ AR+VF+ M ER+V+SW+A+I GYV+ G Y +A+ +F EM+ V
Sbjct: 180 VSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKV 239
Query: 190 GSKA-NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G ++VTLVSVL ACAH+GALD GR + R++ +G L L L +LIDMYAKCG ++E
Sbjct: 240 GGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTMEE 299
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A +F G+ + DV+ W+ MI G HG E+ +++M G+ P+E+TF+GLLSAC
Sbjct: 300 ARRIFDGMR--ERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMGLLSAC 357
Query: 309 AHGGLVMEAWYFF-KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
+H GLV + F + + + +VPK HY C++D LSRAG++ EA + I MP+EP +
Sbjct: 358 SHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMPIEPNVIV 417
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
G+LL GC H E V + L+EL ++ G YV ++ A R D+A M+
Sbjct: 418 WGALLGGCRIHKDFRRGERVAQHLLELDSEYTGSYVYIAGAKASVGRVDDAANCWLRMQH 477
Query: 428 RGVKKYPGWSFVE 440
+G+ K PG S +E
Sbjct: 478 KGIIKDPGCSKIE 490
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 126/268 (47%), Gaps = 34/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFL 69
G+++ + +V + + WN +I GY ++ + +I +F +M + GV PD +T +
Sbjct: 193 GDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSV 252
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A + + + + G +L++ N+LI MY CG + AR +FDGM +
Sbjct: 253 LSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTMEEARRIFDGMRERDV 312
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+SW++M+ CG GD EA + +M +
Sbjct: 313 ISWSTMI-----CGSGTH--------------------------GDADEAFGYYSKMLEC 341
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKE 248
G K NEVT + +L AC+H G +D+G + MI + + + +ID+ ++ G + E
Sbjct: 342 GVKPNEVTFMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDE 401
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
A + + + + +V++W A++GG +H
Sbjct: 402 AEDLINSMPI-EPNVIVWGALLGGCRIH 428
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 135/326 (41%), Gaps = 71/326 (21%)
Query: 105 IHMYGSCG---DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV 161
+ + G+C ++ +A+ +F +P SWN+++
Sbjct: 49 VKLIGACAANANLYHAQLIFAQLPNPNVFSWNAIIK------------------------ 84
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGS--KANEVTLVSVLCACAHLGALDQGRMMLR 219
++ CG ++ AL F + S NE S++ ACA L A+ G +
Sbjct: 85 -------AHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGLEAIADGLKVHA 137
Query: 220 YMIDKGLSLTLPLQTSLIDMYAK-------------------------------CGAIKE 248
+I GL + L TSL+DMY K CG ++
Sbjct: 138 VVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWNTMVSGYCLCGDLES 197
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSA 307
A VF + + DV+ WNAMIGG +G +++E+F EMQ V G+ PD++T + +LSA
Sbjct: 198 ARRVFD--QMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSVLSA 255
Query: 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
CAH G + + + +G RG ++D ++ G + EA M S
Sbjct: 256 CAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTMEEARRIFDGMRERDVISW 315
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVE 393
+++ G HG D A K++E
Sbjct: 316 -STMICGSGTHGDADEAFGYYSKMLE 340
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/422 (38%), Positives = 247/422 (58%), Gaps = 5/422 (1%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFLA 70
++D + KV + + W T++ GY+++ +++ LF +M+ G+ P+ +T
Sbjct: 193 SLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAV 252
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G++ + +H + + G + + N+L+ M+G CG + YAREVFDGM K
Sbjct: 253 SAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVY 312
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW SM++ YAKCG++ A Q+F+ MP RNVVSWS +I Y + +EA+ +F EM G
Sbjct: 313 SWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAG 372
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLR-YMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ TLVSVL ACA LG LD GR + Y++ + LT+ L +LIDM+AKCG + EA
Sbjct: 373 VDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEA 432
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+F E + +V+ WN MI A+HG +E++ LF +++ I PD+ITFLGLL++C+
Sbjct: 433 SKLFD--EMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCS 490
Query: 310 HGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E +FK + + P+ EHYACM+D L + G + EA+E MP+E +
Sbjct: 491 HSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGW 550
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C HG +++ V KLVEL P G YV +S +YA +WD+ + R M R
Sbjct: 551 GALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDR 610
Query: 429 GV 430
G
Sbjct: 611 GT 612
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 169/372 (45%), Gaps = 69/372 (18%)
Query: 26 PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA--- 82
P + T++RG+ +++ P +++ LF +++R + D T+ F KA+ A+ E
Sbjct: 99 PNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTP 158
Query: 83 ---VAVHAQIAKTGYESD-LFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
A+H K G+ + + + N+L+H Y
Sbjct: 159 SGGEAIHCAALKCGFVGESVLVGNALVHFY------------------------------ 188
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS-KANEVT 197
A ++ A +VF+ MPER+VVSW+ L+DGY + G EA +F M VG + N VT
Sbjct: 189 -ANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVT 247
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
LV+ + A +G L G M+ +Y+ + G++ ++ L +L+DM+ KCG ++ A VF G+E
Sbjct: 248 LVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGME 307
Query: 258 KH-----------------------------QSDVLIWNAMIGGLAMHGFVKESLELFTE 288
+ +V+ W+ MI + +E++ LF E
Sbjct: 308 VKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFRE 367
Query: 289 MQIVGITPDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347
M G+ P + T + +LSACA G L + W + + + ++D ++ G
Sbjct: 368 MIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCG 427
Query: 348 QVTEAYEFICQM 359
V EA + +M
Sbjct: 428 DVGEASKLFDEM 439
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 127/278 (45%), Gaps = 34/278 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A + G+++ + ++ + + W+ +I YS+ P +++ LF +M+ AGV P
Sbjct: 319 NAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDA 378
Query: 65 TYPFLAKASGRLAKRELAVAVHAQ-IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + A +L +L ++ I + + N+LI M+ CGD+ A ++FD
Sbjct: 379 TLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDE 438
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + VSWN+M+ +A G+ A ++FE + N+V
Sbjct: 439 MAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVP--------------------- 477
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAK 242
+++T + +L +C+H G + +GR + M + + + +ID+ K
Sbjct: 478 ----------DQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGK 527
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G ++EA V G+ ++D W A++ MHG V+
Sbjct: 528 VGLLEEAFEVARGM-PMEADEAGWGALLNACRMHGNVE 564
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/423 (38%), Positives = 257/423 (60%), Gaps = 3/423 (0%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
V L + +F WN++I GY+K++ N++ LF +M + V PD T L+K S L
Sbjct: 80 VFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGA 139
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
++H + + G+ SD ++NS++ MY CG+ +R+VFD M + S SWN ++ G
Sbjct: 140 LFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAG 199
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV-GSKANEVT 197
YA G + + R+VF+ M RNV SW+A+I+GYV+ GD EAL +F +M+ + G + N V+
Sbjct: 200 YAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVS 259
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
LVSVL AC+ L GR + + + K L+ + L +LIDMY+KCG++ A VF +
Sbjct: 260 LVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFED-D 318
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
D + W++MI G +HG +E++ L+ +M GI PD IT +G+LSAC+ GLV E
Sbjct: 319 SLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEG 378
Query: 318 WYFFKS-LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
+ S + G+ P E +AC+VD L RAGQ+ A +FI MP+EP S+ G+L++ +
Sbjct: 379 LNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSI 438
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436
HG L++ E+ + L++L+P++ YV +SN+YA +RWD R M+ + ++K PG
Sbjct: 439 IHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGC 498
Query: 437 SFV 439
S++
Sbjct: 499 SWI 501
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 129/276 (46%), Gaps = 47/276 (17%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLT---- 65
GN+ +V + +F W +I GY ++ + ++++SLF M + G+ P+ ++
Sbjct: 204 GNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSV 263
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF-DGM 124
P + SG L+ R+ +H + +++ + N+LI MY CG + AR VF D
Sbjct: 264 LPACSSFSGLLSGRQ----IHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDS 319
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
K ++SW+SM+ GY G+ +EA+++++
Sbjct: 320 LCKDAISWSSMISGYGLHGKG-------------------------------QEAILLYD 348
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKC 243
+M G + + +T V +L AC+ G +++G + +I D G+ TL + ++DM +
Sbjct: 349 KMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRA 408
Query: 244 GAIKEAL--IVFHGVEKHQSDVLIWNAMIGGLAMHG 277
G + AL I VE S +W A++ +HG
Sbjct: 409 GQLDPALDFIKAMPVEPGPS---VWGALVSCSIIHG 441
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 139/350 (39%), Gaps = 63/350 (18%)
Query: 80 ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY 139
+L H++I G + ++ LI Y C ++R VFD + K WNS+++GY
Sbjct: 40 KLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGY 99
Query: 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLV 199
AK N A Q+F M +V+ ++ TL
Sbjct: 100 AKNRLYNEAFQLFNQMCSSDVL-------------------------------PDDFTLS 128
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
++ + LGAL G+ + I G + S++ MY KCG +E+ VF +
Sbjct: 129 TLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIR 188
Query: 260 QS-----------------------------DVLIWNAMIGGLAMHGFVKESLELFTEMQ 290
S +V W AMI G +G E+L LF +MQ
Sbjct: 189 NSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQ 248
Query: 291 IV-GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQV 349
++ GI P+ ++ + +L AC+ ++ ++ + + ++D S+ G +
Sbjct: 249 VIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSL 308
Query: 350 TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPD 397
A L A S+++G HGK A ++ K+++ ++PD
Sbjct: 309 DSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPD 358
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 167/432 (38%), Positives = 260/432 (60%), Gaps = 37/432 (8%)
Query: 13 IDYSCKVLSHLSNP-RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFLA 70
+ Y+ KV S + P +F WNT+IRGY++ N + SL+ +M +G V PD TYPFL
Sbjct: 69 MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA +A L +H+ + ++G+ S +++ NSL+H+Y
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLY---------------------- 166
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
A CG++ A +VF+ MPE+++V+W+++I+G+ + G +EAL ++ EM G
Sbjct: 167 ---------ANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKG 217
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K + T+VS+L ACA +GAL G+ + YMI GL+ L L+D+YA+CG ++EA
Sbjct: 218 IKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAK 277
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACA 309
+F E + + W ++I GLA++GF KE++ELF M+ G+ P EITF+G+L AC+
Sbjct: 278 TLFD--EMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335
Query: 310 HGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H G+V E + +F+ + + + P+ EH+ CMVD L+RAGQV +AYE+I MP++P +
Sbjct: 336 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 395
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+LL C HG DLAE ++++L+P+H G YV LSN+YA +RW + + R+ M
Sbjct: 396 RTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD 455
Query: 429 GVKKYPGWSFVE 440
GVKK PG S VE
Sbjct: 456 GVKKVPGHSLVE 467
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 133/288 (46%), Gaps = 34/288 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + KV + + WN+VI G++++ P ++++L+ +M G+ PD T L
Sbjct: 170 GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLL 229
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A ++ L VH + K G +L SN L+ +Y CG + A+ +FD M K SV
Sbjct: 230 SACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSV 289
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW S++ G A G A ++F+ M +G + C
Sbjct: 290 SWTSLIVGLAVNGFGKEAIELFKYMES---------TEGLLPC----------------- 323
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
E+T V +L AC+H G + +G R M ++ + + ++D+ A+ G +K+A
Sbjct: 324 ----EITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKA 379
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
+ Q +V+IW ++G +HG L F +QI+ + P+
Sbjct: 380 YEYIKSMPM-QPNVVIWRTLLGACTVHG--DSDLAEFARIQILQLEPN 424
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/442 (38%), Positives = 248/442 (56%), Gaps = 36/442 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ F A + G+++Y+ V + +P F +NT+IRG+ K+ +P K+ + +M G+
Sbjct: 26 VIVFCAAAEHGDMNYAVSVFEKIGDPDAFIFNTMIRGFGKANDPRKAFDYYKRMQERGLV 85
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
D T+ FL K G+L L +H K G S +F+ N+L+HMYG+ DI
Sbjct: 86 SDSFTFSFLLKVCGQLGLVLLGRLMHCSTLKRGLNSHVFVRNTLVHMYGTFKDI------ 139
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
+RQ+FE +P +V+W+ +ID +V CG + EAL
Sbjct: 140 -------------------------EASRQLFEEIPNPELVAWNIIIDCHVSCGKFNEAL 174
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F M G + +E T V +L AC+ LGALD GR + + + G + SL+DMY
Sbjct: 175 EMFSRMLKFGIEPDEATFVVILSACSALGALDFGRWVHSCISNIGHGCITEVNNSLLDMY 234
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI-TPDEI 299
AKCGA++EA +F+G+ K + + WN MI GLA HG+ E+L LF+ M + PD+I
Sbjct: 235 AKCGALQEAFEIFNGMNK--KNTVTWNTMILGLASHGYANEALALFSNMLEQKLWAPDDI 292
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQ 358
TFL +LSAC+HGG+V + W FF + K + P +HY CMVD L RAG V EAY I
Sbjct: 293 TFLVVLSACSHGGMVDKGWRFFDIMKKEYHIQPTIKHYGCMVDILGRAGFVEEAYRLISN 352
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP++ A + +LL C HG ++L + V K+L+EL+PDH YV L+N YA RW+EA
Sbjct: 353 MPMQCNAIVWRTLLAACRLHGNVELGKQVRKQLLELEPDHSSDYVLLANTYASAGRWNEA 412
Query: 419 RTTREAMETRGVKK-YPGWSFV 439
R+ M RGV+K PG S V
Sbjct: 413 MRVRKTMHKRGVQKPEPGNSVV 434
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 142/318 (44%), Gaps = 39/318 (12%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSC--GDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+HA++ + G+E + F+ +I + GD+ YA VF+ + + +N+M+ G+ K
Sbjct: 7 IHARVIQLGFEQNRFVVGKVIVFCAAAEHGDMNYAVSVFEKIGDPDAFIFNTMIRGFGKA 66
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
+ A ++ M ER +VS + T +L
Sbjct: 67 NDPRKAFDYYKRMQERGLVS-------------------------------DSFTFSFLL 95
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
C LG + GR+M + +GL+ + ++ +L+ MY I+ + +F E +
Sbjct: 96 KVCGQLGLVLLGRLMHCSTLKRGLNSHVFVRNTLVHMYGTFKDIEASRQLFE--EIPNPE 153
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
++ WN +I G E+LE+F+ M GI PDE TF+ +LSAC+ G + +
Sbjct: 154 LVAWNIIIDCHVSCGKFNEALEMFSRMLKFGIEPDEATFVVILSACSALGALDFGRWVHS 213
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ G +E ++D ++ G + EA+E M + T + +++ G +HG +
Sbjct: 214 CISNIGHGCITEVNNSLLDMYAKCGALQEAFEIFNGMNKKNTVTW-NTMILGLASHGYAN 272
Query: 383 LAEIVGKKLVELQ---PD 397
A + ++E + PD
Sbjct: 273 EALALFSNMLEQKLWAPD 290
>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
Length = 562
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 171/442 (38%), Positives = 250/442 (56%), Gaps = 35/442 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++ ALS G++DY+C + + P F +NT++RG+ K N +++ + +M GV
Sbjct: 26 LVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVKDMNTEEALITYKEMAERGVK 85
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+ TYP L KA RL E + VHA I K G E+D+F+ NSLI MYG
Sbjct: 86 PDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYG----------- 134
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
KCGE+ + VFE M ER+V SWSALI + G + + L
Sbjct: 135 --------------------KCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCL 174
Query: 181 VIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
+ +M + G +A E LVSVL AC HLGALD GR + +++ L + ++TSLI+M
Sbjct: 175 RLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEM 234
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y KCG + + + +F + K + L ++ MI GLAMHG+ +E L +FTEM G+ PD+I
Sbjct: 235 YLKCGXLYKGMCLFQKMAK--KNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDI 292
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
++G+L+AC+H GLV E F + + G+ P +HY CMVD + RAG++ EA E I
Sbjct: 293 VYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKS 352
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP+EP + SLL+ H L EI K+L +L YV LSN+YA +RW++
Sbjct: 353 MPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDV 412
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
TR M ++G+ + PG+S VE
Sbjct: 413 ARTRTNMFSKGLSQRPGFSLVE 434
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/440 (36%), Positives = 259/440 (58%), Gaps = 6/440 (1%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+AL ++ Y + S L P F W +IR Y+ ++++S + M + VSP
Sbjct: 51 TALPHVPLHSYPRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISF 110
Query: 65 TYPFLAKASGRLAKRELAVAVHAQ-IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T+ L A + L +HAQ + G+ SDL+++N++I MY CG + AR VFD
Sbjct: 111 TFSALFSACAAVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDE 170
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
MP + +SW ++ Y + G+M AR +F+ +P +++V+W+A++ GY + +AL +F
Sbjct: 171 MPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVF 230
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL--TLPLQTSLIDMYA 241
+RD G + +EVTLV V+ ACA LGA + G + + + ++LIDMY+
Sbjct: 231 RRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYS 290
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
KCG ++EA VF G+ + +V +++MI G A+HG + +++LF +M G+ P+ +TF
Sbjct: 291 KCGNVEEAYDVFKGMR--ERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTF 348
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+G+L+AC+H GLV + F S+ K G+ P +E YACM D LSRAG + +A + + MP
Sbjct: 349 VGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMP 408
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
+E ++ G+LL HG D+AEI K+L EL+PD+ G Y+ LSN YA RWD+
Sbjct: 409 MESDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSK 468
Query: 421 TREAMETRGVKKYPGWSFVE 440
R+ + + +KK PGWS+VE
Sbjct: 469 VRKLLREKNLKKNPGWSWVE 488
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 174/432 (40%), Positives = 246/432 (56%), Gaps = 4/432 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + KV + +F W +I + ++ ++++LF M G D +
Sbjct: 214 GMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVV 273
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A RL H + G S L + N+LIHMY S ++V AR +FD
Sbjct: 274 AACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQF 333
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNSM+ GY K G + A+++F +MP+++ VSW+ +I G V+ EAL IF M+ G
Sbjct: 334 SWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQG 393
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K +EVTLVSV+ AC ++ +L+QG+ M Y+ + ++T+ L TSLIDMY KCG ++ AL
Sbjct: 394 IKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESAL 453
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI-TPDEITFLGLLSACA 309
VF +E+ + WNA+I GLAM+G V +SL++F+EM+ TP+EITF G+LSAC
Sbjct: 454 EVFDTMEERGTPC--WNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACR 511
Query: 310 HGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E +FFK + K ++P HY CMVD L RAG V EA I MP+ P
Sbjct: 512 HAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAW 571
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C HG ++ E VG+KLV L P HDG + LSN+YA W + R +M+
Sbjct: 572 GALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKDLRGSMKQW 631
Query: 429 GVKKYPGWSFVE 440
V K PG S VE
Sbjct: 632 HVPKIPGSSVVE 643
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 118/437 (27%), Positives = 192/437 (43%), Gaps = 44/437 (10%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
+S ++L + P F N V++ + P+ + L+ M +PD T+ LA A
Sbjct: 58 HSLRLLHVVHRPNAFSCNMVLKAAREHGLPHLCLPLYASM---SAAPDCYTHTILAAACA 114
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
E VH + G+ +L+++N+L+ MY +CG + AR+VFD P +VSWN+
Sbjct: 115 TRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNT 174
Query: 135 MLDGYAKCGEMNMARQVFELMPER-------------------------------NVVSW 163
+L Y + +++ A VF MPER +V +W
Sbjct: 175 ILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTW 234
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
+A+I + + G + EAL +F +MR G +E +V V+ ACA L G M
Sbjct: 235 TAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFR 294
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
GL L +Q +LI MY+ + A +F + D WN+MI G +G VK++
Sbjct: 295 AGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQC--LDQFSWNSMIAGYLKNGSVKDAK 352
Query: 284 ELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDA- 342
ELFT M D +++ ++S C EA F ++ +G+ P ++ A
Sbjct: 353 ELFTVMP----DKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISAC 408
Query: 343 --LSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVEL-QPDHD 399
+S Q +E+I + T + SL+ M G L+ A V + E P +
Sbjct: 409 TNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWN 468
Query: 400 GRYVGLSNVYAIFKRWD 416
VGL+ + K D
Sbjct: 469 AVIVGLAMNGLVMKSLD 485
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 167/432 (38%), Positives = 260/432 (60%), Gaps = 37/432 (8%)
Query: 13 IDYSCKVLSHLSNP-RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFLA 70
+ Y+ KV S + P +F WNT+IRGY++ N + SL+ +M +G V PD TYPFL
Sbjct: 69 MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA +A L +H+ + ++G+ S +++ NSL+H+Y
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLY---------------------- 166
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
A CG++ A +VF+ MPE+++V+W+++I+G+ + G +EAL ++ EM G
Sbjct: 167 ---------ANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKG 217
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K + T+VS+L ACA +GAL G+ + YMI GL+ L L+D+YA+CG ++EA
Sbjct: 218 IKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAK 277
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACA 309
+F E + + W ++I GLA++GF KE++ELF M+ G+ P EITF+G+L AC+
Sbjct: 278 TLFD--EMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335
Query: 310 HGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H G+V E + +F+ + + + P+ EH+ CMVD L+RAGQV +AYE+I MP++P +
Sbjct: 336 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 395
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+LL C HG DLAE ++++L+P+H G YV LSN+YA +RW + + R+ M
Sbjct: 396 RTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD 455
Query: 429 GVKKYPGWSFVE 440
GVKK PG S VE
Sbjct: 456 GVKKVPGHSLVE 467
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 136/297 (45%), Gaps = 34/297 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + KV + + WN+VI G++++ P ++++L+ +M G+ PD T L
Sbjct: 170 GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLL 229
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A ++ L VH + K G +L SN L+ +Y CG + A+ +FD M K SV
Sbjct: 230 SACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSV 289
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW S++ G A G A ++F+ M +G + C
Sbjct: 290 SWTSLIVGLAVNGFGKEAIELFKYMES---------TEGLLPC----------------- 323
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
E+T V +L AC+H G + +G R M ++ + + ++D+ A+ G +K+A
Sbjct: 324 ----EITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKA 379
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ Q +V+IW ++G +HG L F +QI+ + P+ LLS
Sbjct: 380 YEYIKSM-PMQPNVVIWRTLLGACTVHG--DSDLAEFARIQILQLEPNHSGDYVLLS 433
>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Glycine max]
Length = 682
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 155/423 (36%), Positives = 257/423 (60%), Gaps = 8/423 (1%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
N++ + + R+ WN ++ GY++S +++ LF ML +G PD T+ +
Sbjct: 213 NLETARMYFDEMPERRVASWNAMLSGYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLS 272
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT-KMSV 130
+ L LA ++ ++ + + S+ F+ +L+ M+ CG++ A+++F+ + K SV
Sbjct: 273 SCSSLGDPCLAESIVRKLDRMNFRSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSV 332
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDV 189
+WN+M+ YA+ G++++AR +F MPERN VSW+++I GY + G+ +A+ +F+EM
Sbjct: 333 TWNAMISAYARVGDLSLARDLFNKMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSK 392
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
SK +EVT+VSV AC HLG L G + + + + L++ SLI MY +CG++++A
Sbjct: 393 DSKPDEVTMVSVFSACGHLGRLGLGNWAVSILHENHIKLSISGYNSLIFMYLRCGSMEDA 452
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
I F E D++ +N +I GLA HG ES++L ++M+ GI PD IT++G+L+AC+
Sbjct: 453 RITFQ--EMATKDLVSYNTLISGLAAHGHGTESIKLMSKMKEDGIGPDRITYIGVLTACS 510
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
H GL+ E W F+S+ VP +HYACM+D L R G++ EA + I MP+EP A + G
Sbjct: 511 HAGLLEEGWKVFESIK----VPDVDHYACMIDMLGRVGKLEEAVKLIQSMPMEPHAGIYG 566
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL H +++L E+ KL +++P + G YV LSN+YA+ RW + R+ M +G
Sbjct: 567 SLLNATSIHKQVELGELAAAKLFKVEPHNSGNYVLLSNIYALAGRWKDVDKVRDKMRKQG 626
Query: 430 VKK 432
VKK
Sbjct: 627 VKK 629
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/432 (24%), Positives = 191/432 (44%), Gaps = 72/432 (16%)
Query: 14 DYSCKVLSHLSNPRIFYWNTVIRGYSK-SKNPNKSISLFVKM-LRAGVSPDHLTYPFLAK 71
+Y+ + + P + + +++ YS+ +SLF M + P YP L K
Sbjct: 53 NYTSHIFRAATYPNVHVFTCMLKYYSQIGATTQVVVSLFKHMQYYNDIKPYTSFYPVLIK 112
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
++G+ + +HA + K G+ D + N+++ +Y G I AR++FD MP + +
Sbjct: 113 SAGKAG-----MLLHAYLLKLGHSHDHHVRNAIMGIYAKYGCIELARKLFDEMPDRTAAD 167
Query: 132 WNSMLDGYAKCGE---------------------------------MNMARQVFELMPER 158
WN ++ GY KCG + AR F+ MPER
Sbjct: 168 WNVIISGYWKCGNEKEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMPER 227
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
V SW+A++ GY + G +E + +F++M G++ +E T V+VL +C+ LG ++
Sbjct: 228 RVASWNAMLSGYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIV 287
Query: 219 RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH--GVEKH----------------- 259
R + ++T+L+DM+AKCG ++ A +F GV K+
Sbjct: 288 RKLDRMNFRSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDL 347
Query: 260 -----------QSDVLIWNAMIGGLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLSA 307
+ + + WN+MI G A +G ++++LF EM PDE+T + + SA
Sbjct: 348 SLARDLFNKMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSA 407
Query: 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
C H G + + L + + Y ++ R G + +A +M + S
Sbjct: 408 CGHLGRLGLGNWAVSILHENHIKLSISGYNSLIFMYLRCGSMEDARITFQEMATKDLVS- 466
Query: 368 LGSLLTGCMNHG 379
+L++G HG
Sbjct: 467 YNTLISGLAAHG 478
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 131/290 (45%), Gaps = 61/290 (21%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS-PD 62
SA + +G++ + + + + WN++I GY+++ K+I LF +M+ + S PD
Sbjct: 338 ISAYARVGDLSLARDLFNKMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPD 397
Query: 63 HLTYPFLAKASGRLAKREL---AVAV----HAQIAKTGYESDLFISNSLIHMYGSCGDIV 115
+T + A G L + L AV++ H +++ +GY NSLI MY CG +
Sbjct: 398 EVTMVSVFSACGHLGRLGLGNWAVSILHENHIKLSISGY-------NSLIFMYLRCGSME 450
Query: 116 YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
AR F M TK VS+N+++ G A G
Sbjct: 451 DARITFQEMATKDLVSYNTLISGLAAHGHGT----------------------------- 481
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP---L 232
E++ + +M++ G + +T + VL AC+H G L++G + S+ +P
Sbjct: 482 --ESIKLMSKMKEDGIGPDRITYIGVLTACSHAGLLEEGWKVFE-------SIKVPDVDH 532
Query: 233 QTSLIDMYAKCGAIKEA--LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+IDM + G ++EA LI +E H I+ +++ ++H V+
Sbjct: 533 YACMIDMLGRVGKLEEAVKLIQSMPMEPHAG---IYGSLLNATSIHKQVE 579
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 86/195 (44%), Gaps = 26/195 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+++ + ++ + +NT+I G + + +SI L KM G+ PD +TY +
Sbjct: 447 GSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKLMSKMKEDGIGPDRITYIGV- 505
Query: 71 KASGRLAKRELAVAVHAQIAKTGYE-------SDLFISNSLIHMYGSCGDIVYAREVFDG 123
L HA + + G++ D+ +I M G G + A ++
Sbjct: 506 ----------LTACSHAGLLEEGWKVFESIKVPDVDHYACMIDMLGRVGKLEEAVKLIQS 555
Query: 124 MPTKMSVS-WNSMLDGYA-----KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
MP + + S+L+ + + GE+ A+ +F++ P N ++ L + Y G +K
Sbjct: 556 MPMEPHAGIYGSLLNATSIHKQVELGELAAAK-LFKVEPH-NSGNYVLLSNIYALAGRWK 613
Query: 178 EALVIFEEMRDVGSK 192
+ + ++MR G K
Sbjct: 614 DVDKVRDKMRKQGVK 628
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 174/432 (40%), Positives = 246/432 (56%), Gaps = 4/432 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + KV + +F W +I + ++ ++++LF M G D +
Sbjct: 214 GMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVV 273
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A RL H + G S L + N+LIHMY S ++V AR +FD
Sbjct: 274 AACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQF 333
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNSM+ GY K G + A+++F +MP+++ VSW+ +I G V+ EAL IF M+ G
Sbjct: 334 SWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQG 393
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K +EVTLVSV+ AC ++ +L+QG+ M Y+ + ++T+ L TSLIDMY KCG ++ AL
Sbjct: 394 IKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESAL 453
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI-TPDEITFLGLLSACA 309
VF +E+ + WNA+I GLAM+G V +SL++F+EM+ TP+EITF G+LSAC
Sbjct: 454 EVFDTMEERGTPC--WNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACR 511
Query: 310 HGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E +FFK + K ++P HY CMVD L RAG V EA I MP+ P
Sbjct: 512 HAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAW 571
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C HG ++ E VG+KLV L P HDG + LSN+YA W + R +M+
Sbjct: 572 GALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKDLRGSMKQW 631
Query: 429 GVKKYPGWSFVE 440
V K PG S VE
Sbjct: 632 HVPKIPGSSVVE 643
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 118/437 (27%), Positives = 192/437 (43%), Gaps = 44/437 (10%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
+S ++L + P F N V++ + P+ + L+ M +PD T+ LA A
Sbjct: 58 HSLRLLHVVHRPNAFSCNMVLKAAREHGLPHLCLPLYASM---SAAPDCYTHTILAAACA 114
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
E VH + G+ +L+++N+L+ MY +CG + AR+VFD P +VSWN+
Sbjct: 115 TRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNT 174
Query: 135 MLDGYAKCGEMNMARQVFELMPER-------------------------------NVVSW 163
+L Y + +++ A VF MPER +V +W
Sbjct: 175 ILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTW 234
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
+A+I + + G + EAL +F +MR G +E +V V+ ACA L G M
Sbjct: 235 TAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFR 294
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
GL L +Q +LI MY+ + A +F + D WN+MI G +G VK++
Sbjct: 295 AGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQC--LDQFSWNSMIAGYLKNGSVKDAK 352
Query: 284 ELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDA- 342
ELFT M D +++ ++S C EA F ++ +G+ P ++ A
Sbjct: 353 ELFTVMP----DKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISAC 408
Query: 343 --LSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVEL-QPDHD 399
+S Q +E+I + T + SL+ M G L+ A V + E P +
Sbjct: 409 TNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWN 468
Query: 400 GRYVGLSNVYAIFKRWD 416
VGL+ + K D
Sbjct: 469 AVIVGLAMNGLVMKSLD 485
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 165/426 (38%), Positives = 245/426 (57%), Gaps = 6/426 (1%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
V + P F W +IRGY+ +S+ L+ M R G+ P T+ L KA
Sbjct: 95 VFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALD 154
Query: 79 RELAVAVHAQ-IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
L VH Q I G+ SDL++ N+LI MY CG + VFD M + +SW S++
Sbjct: 155 VNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIV 214
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
YAK G M A ++F+ +P +++V+W+A++ GY + +EAL +FE M+ G K +EVT
Sbjct: 215 AYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVT 274
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLT--LPLQTSLIDMYAKCGAIKEALIVFHG 255
LV V+ ACA LGA + G T + + ++LIDMYAKCG++++A VF
Sbjct: 275 LVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFER 334
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
+E + +V +++MI G AMHG ++ELF EM I P+ +TF+G+L+AC+H G+V
Sbjct: 335 ME--ERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVE 392
Query: 316 EAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
+ F + + G+ P +HYACMVD L RAG++ EA + MP+ P + G+LL
Sbjct: 393 QGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGA 452
Query: 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
C HG D+A+I L EL+P+ G Y+ LSN+YA RWD+ R+ M +G+KK P
Sbjct: 453 CRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNP 512
Query: 435 GWSFVE 440
G S+VE
Sbjct: 513 GCSWVE 518
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 130/277 (46%), Gaps = 39/277 (14%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A + +GN++ + ++ L + W ++ GY+++ P +++ +F +M AGV D +T
Sbjct: 215 AYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVT 274
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGY--ESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+ A +L + A V ++G+ S++ + ++LI MY CG + A +VF+
Sbjct: 275 LVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFER 334
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + S++SM+ G+A G +A EL F
Sbjct: 335 MEERNVYSYSSMIVGFAMHG---LAGAAMEL----------------------------F 363
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAK 242
+EM K N VT + VL AC+H G ++QG+ + M + G++ + ++D+ +
Sbjct: 364 DEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGR 423
Query: 243 CGAIKEA--LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
G ++EA L+ + H +W A++G +HG
Sbjct: 424 AGRLEEALNLVKMMPMNPHGG---VWGALLGACRIHG 457
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL--IV 252
E LVSVL C H ++Q + + ++ KGL + L+ K + +V
Sbjct: 39 ESRLVSVLHGCTH---INQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLV 95
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
F VE + +W A+I G A+ G ES+ L+ M+ GI P TF LL AC+
Sbjct: 96 FQQVE--YPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACS 150
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 160/417 (38%), Positives = 251/417 (60%), Gaps = 6/417 (1%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKREL--AVAV 85
I W + + Y ++ +++ + F +M AGV P+H+T+ L A A ++
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSL 116
Query: 86 HAQIAKTGYES-DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
H K G ++ + + +LI MY C + +AR+VF + K SVSWN+ML+G+ + GE
Sbjct: 117 HGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGE 176
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
+ +A Q+F+ MP R+ +SW+ALI+G +K G ++AL F +M+ G A+ V++++VL A
Sbjct: 177 IELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAA 236
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
CA LGAL G + R+++ + + + SLIDMY++CG I+ A VF V+ + ++
Sbjct: 237 CADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVF--VKMAKRTLV 294
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
WN++I G A++GF ESLE F MQ G PD +++ G L+AC+H GLV + F ++
Sbjct: 295 SWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNM 354
Query: 325 GK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+ P+ EHY C+VD RAG++ +A I +MP++P +LGSLL C HG ++L
Sbjct: 355 KSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNL 414
Query: 384 AEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
AE + K L +L P+ D YV LSN+YA +WD A R M+ RGV+K PG+S VE
Sbjct: 415 AERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVE 471
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + ++ + W +I G K +++ F +M R+GV+ D+++ +
Sbjct: 175 GEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVL 234
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L L + VH + ++ ++ ISNSLI MY CG I +AR+VF M + V
Sbjct: 235 AACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLV 294
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS++ G+A ++G+ E+L F M+ G
Sbjct: 295 SWNSIIVGFA--------------------------VNGFA-----DESLEFFXAMQKEG 323
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKEA 249
K + V+ L AC+H G +++G + M ++ + ++D+Y + G +++A
Sbjct: 324 FKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDA 383
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
L + + ++V++ +++ HG V + L + + P+ + LLS
Sbjct: 384 LNMIEEMPMKPNEVVL-GSLLAACRTHGDVNLAERLMK--HLFKLDPEGDAYYVLLS 437
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 33/202 (16%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G I+++ +V ++ + WN++I G++ + ++S+ F M + G PD ++Y
Sbjct: 273 SRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSY- 331
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIH--------------MYGSCGD 113
L HA + G E LF + +H +YG G
Sbjct: 332 ----------TGALTACSHAGLVNKGLE--LFDNMKSVHKITPRIEHYGCIVDLYGRAGR 379
Query: 114 IVYAREVFDGMPTKMS-VSWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALID 168
+ A + + MP K + V S+L G++N+A + +F+L PE + + L +
Sbjct: 380 LEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPEGDAY-YVLLSN 438
Query: 169 GYVKCGDYKEALVIFEEMRDVG 190
Y G + A + M+ G
Sbjct: 439 IYAAIGKWDGANNVRRTMKARG 460
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 165/421 (39%), Positives = 243/421 (57%), Gaps = 7/421 (1%)
Query: 25 NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE---L 81
N I W T I Y KS + K+ S FV+M A + P+H+T+ L A R
Sbjct: 53 NDPIVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISF 112
Query: 82 AVAVHAQIAKTGYE-SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
A+HA + K G + +D+ + +LI MY CG + AR FD M + VSWN+M+DGY
Sbjct: 113 GTAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYM 172
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
+ G+ A QVF+ +P +N +SW+ALI G+VK ++EAL F EM+ G + VT+++
Sbjct: 173 RNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIA 232
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
V+ ACA+LG L G + R ++ + + + SLIDMY++CG I A VF + Q
Sbjct: 233 VIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMP--Q 290
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
++ WN++I G A++G E+L F MQ G PD +++ G L AC+H GL+ E
Sbjct: 291 RTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRI 350
Query: 321 FKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
F+ + + R ++P+ EHY C+VD SRAG++ EA + MP++P +LGSLL C G
Sbjct: 351 FEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQG 410
Query: 380 KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
+ LAE V L+EL D YV LSN+YA +WD A R M+ RG++K PG+S +
Sbjct: 411 NIGLAENVMNYLIELDSGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSI 470
Query: 440 E 440
E
Sbjct: 471 E 471
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 120/258 (46%), Gaps = 36/258 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + + +V L W +I G+ K +++ F +M +GV+PD++T +
Sbjct: 175 GKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVI 234
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L L + VH + + +++ +SNSLI MY CG I AR+VFD MP + V
Sbjct: 235 AACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLV 294
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS++ G+A G L D EAL F M++ G
Sbjct: 295 SWNSIIVGFAVNG----------------------LAD---------EALSYFNSMQEEG 323
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPL---QTSLIDMYAKCGAIK 247
K + V+ L AC+H G + +G + +M K + LP L+D+Y++ G ++
Sbjct: 324 FKPDGVSYTGALMACSHAGLIGEGLRIFEHM--KRVRRILPRIEHYGCLVDLYSRAGRLE 381
Query: 248 EALIVFHGVEKHQSDVLI 265
EAL V + ++V++
Sbjct: 382 EALNVLKNMPMKPNEVIL 399
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
K+ ++ W I G + ++ F +M+ I P+ ITF+ LLSACAH
Sbjct: 51 KYNDPIVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAH 103
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 78/189 (41%), Gaps = 7/189 (3%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY- 66
S G ID + +V + + WN++I G++ + ++++S F M G PD ++Y
Sbjct: 273 SRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYT 332
Query: 67 -PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+A + L L + H + + + L+ +Y G + A V MP
Sbjct: 333 GALMACSHAGLIGEGLRIFEHMKRVRR-ILPRIEHYGCLVDLYSRAGRLEEALNVLKNMP 391
Query: 126 TKMS-VSWNSMLDGYAKCGEMNMARQVFELMPERNV---VSWSALIDGYVKCGDYKEALV 181
K + V S+L G + +A V + E + ++ L + Y G + A
Sbjct: 392 MKPNEVILGSLLAACRTQGNIGLAENVMNYLIELDSGGDSNYVLLSNIYAAVGKWDGANK 451
Query: 182 IFEEMRDVG 190
+ M++ G
Sbjct: 452 VRRRMKERG 460
>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 511
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 168/437 (38%), Positives = 261/437 (59%), Gaps = 4/437 (0%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
L + N+ Y+ K+ NP IF +N +I+ YS P++SI L+ + G+ P+H T+
Sbjct: 26 LLLIPNLVYARKLFDLHRNPCIFLYNKLIQSYSVHHQPHESIVLYNLLSFDGIRPNHHTF 85
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
F+ AS + +H+Q ++G+ESD F +LI Y G + AR VFD M
Sbjct: 86 NFIFAASASFSSARPLRLLHSQFFRSGFESDSFCCTALITAYAKLGALCCARRVFDEMSN 145
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ WN+M+ GY + G+M A ++F+ MP +NV SW+ +I G+ + G+Y EAL +F M
Sbjct: 146 RDVPVWNAMITGYQRRGDMKAAMELFDSMPNKNVTSWTTVISGFSQNGNYSEALTMFLCM 205
Query: 187 -RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
+D K N +TLVSVL ACA+LG L+ GR + Y + G + ++ + ++MY+KCG
Sbjct: 206 EKDKSVKPNHITLVSVLPACANLGELEIGRRLEGYARENGFFDNIYVRNATLEMYSKCGM 265
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
I A +F + +Q +++ WN+MIG LA HG E+LEL+ +M G PD +TF+GLL
Sbjct: 266 IDVAKRLFDEI-GNQRNLISWNSMIGSLATHGKHDEALELYAQMLQEGERPDAVTFVGLL 324
Query: 306 SACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
AC HGG+V++ KS+ + + PK EHY CM+D L R G++ EA + I MP++P
Sbjct: 325 LACVHGGMVLKGKELLKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEACDLIKTMPMKPD 384
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
A + G+LL C HG +++AEI + L++L+P + G V +SN+YA ++WD R+
Sbjct: 385 AVVWGTLLGACSFHGNVEIAEIASEALMKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKL 444
Query: 425 METRGVKKYPGWS-FVE 440
M+ + K G+S FVE
Sbjct: 445 MKKETMTKAAGYSYFVE 461
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 182/501 (36%), Positives = 257/501 (51%), Gaps = 75/501 (14%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
++ Y+ + L+ P IF WNT+IRG+S S P + + ++ GV PD T+P L K
Sbjct: 53 DLGYTLLLFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLK 112
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A +L + E +A I K G + D F+ NSL+ + CG + +R +F K VS
Sbjct: 113 AFSKL-RNENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVS 171
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNV------------------------------- 160
W ++++G + G A + F M V
Sbjct: 172 WTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYV 231
Query: 161 ----VSW-----SALIDGYVKCG-------------------------------DYKEAL 180
V W SAL+D Y KCG YKEAL
Sbjct: 232 ESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEAL 291
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F+EM G + N+ T+ S L ACA LG+LDQGR + Y+ L L L T+L+DMY
Sbjct: 292 KVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMY 351
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
+KCG + EAL+VF + DV W AMI GLAM G SL LF++M + P+ +T
Sbjct: 352 SKCGCVDEALLVFEKLPA--KDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVT 409
Query: 301 FLGLLSACAHGGLVMEAWYFFK-SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
FLG+LSACAHGGLV E F+ + + P +HY CMVD L RAG++ EA +FI M
Sbjct: 410 FLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESM 469
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P+EPT + G+L +GCM H +L E +G L++LQP H GRY+ L+N+Y+ ++W+ A
Sbjct: 470 PMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAA 529
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R M+ +GV K PG S++E
Sbjct: 530 NVRRLMKGKGVDKSPGCSWIE 550
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 112/270 (41%), Gaps = 33/270 (12%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G D + KV + + + W +I GY + +++ +F +M+ G+ P+ T
Sbjct: 251 SKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVT 310
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
A +L + +H + ++ + + +L+ MY CG + A VF+ +P K
Sbjct: 311 SALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAK 370
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
W +M++G A GD +L +F +M
Sbjct: 371 DVYPWTAMINGLA-------------------------------MRGDALSSLNLFSQMI 399
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAI 246
+ N VT + VL ACAH G +D+G + R MI D L + ++D+ + G +
Sbjct: 400 RSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRL 459
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+EA+ + + +W A+ G +H
Sbjct: 460 EEAIKFIESMPMEPTPG-VWGALFSGCMIH 488
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 162/424 (38%), Positives = 250/424 (58%), Gaps = 3/424 (0%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V + P + W +IR Y P K++ LF M G++PD + + A G L
Sbjct: 147 QVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLG 206
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+A A+H I K+G E D F+S++LI YG CG + YA F P K V WN+M+
Sbjct: 207 DLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIH 266
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
+ + + +Q+F+ MP+R+VVSW+++I G+ + G Y+EAL F EM G N +T
Sbjct: 267 QSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALT 326
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
L+S L ACA GALD G + Y+ ++ L +SLIDMY+KCG I +A+ +F E
Sbjct: 327 LLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFE--E 384
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+ D+ W +++ GLAMHG +++L F++M+ + PD++T +G+LSACAH GL+ +
Sbjct: 385 STRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQG 444
Query: 318 WYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
W++F+S+ K G+VPK EHY MVD L R G + EAY+ I MP+E + G+ L+ C
Sbjct: 445 WWYFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACR 504
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436
H ++L E+ ++L+ L P V LSN+YA +WD + R+ ++ +G+KK PG
Sbjct: 505 VHNNVELGEVAARRLLGLXPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGC 564
Query: 437 SFVE 440
S +E
Sbjct: 565 SSIE 568
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 116/413 (28%), Positives = 182/413 (44%), Gaps = 71/413 (17%)
Query: 21 SHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM--LRAGVSPDHLTYPFLAKA--SGRL 76
S L +F WNT+IR ++ + L M LRAG+ P+ T+ +L KA SG+
Sbjct: 47 SRLDCANVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQE 106
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
K VHA + +TG+ F+S +L+ Y +CG +
Sbjct: 107 VKE--GEEVHASVVRTGFACSEFVSGALLGFYVACGLV---------------------- 142
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
RQVF+ M + +V W+ +I YV ++AL +F MR+VG + V
Sbjct: 143 ---------GKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMV 193
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL------ 250
+ +V+ AC LG L + M ++ G+ + + ++LI Y +CG++ A
Sbjct: 194 AVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQET 253
Query: 251 ----IVFHGVEKHQS-------------------DVLIWNAMIGGLAMHGFVKESLELFT 287
IV HQS DV+ WN+MIGG A G +E+L F
Sbjct: 254 PMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFH 313
Query: 288 EMQIVGITPDEITFLGLLSACA-HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA 346
EM+ G++P+ +T L LSACA HG L AW + K M + ++D S+
Sbjct: 314 EMEFSGVSPNALTLLSTLSACASHGALDTGAW-IHAYVDKNDMNRDGSLDSSLIDMYSKC 372
Query: 347 GQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPD 397
G + +A + I + S++ G HG+ + A K+ E +QPD
Sbjct: 373 GDIDKAVQ-IFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPD 424
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 131/320 (40%), Gaps = 66/320 (20%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIR-------------------------------GYS 39
G++DY+ + I WNT+I G++
Sbjct: 241 GSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFA 300
Query: 40 KSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
+ ++++ F +M +GVSP+ LT A + +HA + K D
Sbjct: 301 RIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGS 360
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
+ +SLI MY CGDI A ++ FE R+
Sbjct: 361 LDSSLIDMYSKCGDIDKAVQI-------------------------------FEESTRRD 389
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
+ +W++++ G G ++AL F +M++ + ++VT+V VL ACAH G LDQG +
Sbjct: 390 LFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQ 449
Query: 220 YMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGF 278
M GL + ++D+ + G +KEA + G+ +++ IW A + +H
Sbjct: 450 SMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGMPMEANEI-IWGAFLSACRVHNN 508
Query: 279 VKESLELFTEMQIVGITPDE 298
V+ L +++G+ P +
Sbjct: 509 VE--LGEVAARRLLGLXPRD 526
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 163/437 (37%), Positives = 258/437 (59%), Gaps = 10/437 (2%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPF 68
L N++ + K+ ++ WN +I GY + + +I+ F +M + G PD T
Sbjct: 245 LSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVS 304
Query: 69 LAKASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
A L EL +H + K G+ + I N+L+ MY CG + AR +FD M K
Sbjct: 305 TLSACTALKNLELGDEIHNYVRKELGFTTR--IDNALLDMYAKCGCLNIARNIFDEMSMK 362
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+ W SM+ GY CG++ AR +F+ P R+VV W+A+I+GYV+ + +A+ +F EM+
Sbjct: 363 NVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQ 422
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
K ++ T+V++L CA LGAL+QG+ + Y+ + +++ + + T+LI+MY+KCG +
Sbjct: 423 IQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVD 482
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
++L +F+ +E D W ++I GLAM+G E+L LF+EM+ VG PD+ITF+G+LSA
Sbjct: 483 KSLEIFYELE--DKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSA 540
Query: 308 CAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEP--- 363
C+HGGLV E FF S+ K + PK EHY C++D L RAG + EA E I ++P+E
Sbjct: 541 CSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEI 600
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ G+LL+ C H +D+ E + KKL ++ + L+N+YA RW++A+ R
Sbjct: 601 VVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRR 660
Query: 424 AMETRGVKKYPGWSFVE 440
M+ GVKK PG S +E
Sbjct: 661 KMKELGVKKMPGCSLIE 677
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 192/410 (46%), Gaps = 63/410 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++F A S LGN+ Y+ K+ +++ +P +F +N +++ Y+K K + LF ++ G+
Sbjct: 135 LMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLW 194
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD TYPF+ KA G L V I KTG + D ++ NSLI MY ++ A+++
Sbjct: 195 PDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKL 254
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD M T+ SVSWN M+ GY V+C +++A+
Sbjct: 255 FDEMTTRDSVSWNVMISGY-------------------------------VRCRRFEDAI 283
Query: 181 VIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
F EM+ G+ K +E T+VS L AC L L+ G + Y + K L T + +L+DM
Sbjct: 284 NTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNY-VRKELGFTTRIDNALLDM 342
Query: 240 YAKCGAIKEALIVFHGVEKHQ-----------------------------SDVLIWNAMI 270
YAKCG + A +F + DV++W AMI
Sbjct: 343 YAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMI 402
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
G +++ LF EMQI I PD+ T + LL+ CA G + + + L + +
Sbjct: 403 NGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIT 462
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
+++ S+ G V ++ E ++ + TAS S++ G +GK
Sbjct: 463 MDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWT-SIICGLAMNGK 511
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 167/452 (36%), Positives = 258/452 (57%), Gaps = 15/452 (3%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L F L+ L N+ Y+ + H+ +P ++ + +I Y+ + ++ L+ M+R
Sbjct: 93 LLRFCTLA-LSNLSYARFIFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRP 151
Query: 61 -PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGS-CGDIVYAR 118
P+H YP + K+ ++ A VH Q+ ++G+E + +L+ Y D+ AR
Sbjct: 152 WPNHFIYPHVLKSCTQVVGPGSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESAR 211
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
+FD M + VSW +M+ GY + G++ A +FE MPER+V SW+ALI GY + G + E
Sbjct: 212 LLFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFME 271
Query: 179 ALVIFEEMRDV-------GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
AL +F M V G++ N+VT V L AC H G L G+ + Y+ GL L
Sbjct: 272 ALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSF 331
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
+ +L+DMY KCG +KEA VF + + WN+MI LA+HG + ++ +F EM
Sbjct: 332 VSNALVDMYGKCGCLKEARRVFD--RTLERSLTSWNSMINCLALHGQSQNAISVFEEMMT 389
Query: 292 VG--ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQ 348
G + PDE+TF+GLL+AC HGGLV + W +F+ + + G+ P+ EHY C+VD L RAGQ
Sbjct: 390 CGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQ 449
Query: 349 VTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNV 408
EA E + M +EP + GSLL GC HG DLAE KKL+++ P++ G + L+N+
Sbjct: 450 FEEAMEVVRGMRIEPDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGYGIMLANI 509
Query: 409 YAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
Y +WDE R R+ ++ + K PG S++E
Sbjct: 510 YGELGKWDEVRKVRKVLKEQNAHKTPGCSWIE 541
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 163/437 (37%), Positives = 258/437 (59%), Gaps = 10/437 (2%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPF 68
L N++ + K+ ++ WN +I GY + + +I+ F +M + G PD T
Sbjct: 291 LSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVS 350
Query: 69 LAKASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
A L EL +H + K G+ + I N+L+ MY CG + AR +FD M K
Sbjct: 351 TLSACTALKNLELGDEIHNYVRKELGFTTR--IDNALLDMYAKCGCLNIARNIFDEMSMK 408
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+ W SM+ GY CG++ AR +F+ P R+VV W+A+I+GYV+ + +A+ +F EM+
Sbjct: 409 NVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQ 468
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
K ++ T+V++L CA LGAL+QG+ + Y+ + +++ + + T+LI+MY+KCG +
Sbjct: 469 IQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVD 528
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
++L +F+ +E D W ++I GLAM+G E+L LF+EM+ VG PD+ITF+G+LSA
Sbjct: 529 KSLEIFYELE--DKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSA 586
Query: 308 CAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEP--- 363
C+HGGLV E FF S+ K + PK EHY C++D L RAG + EA E I ++P+E
Sbjct: 587 CSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEI 646
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ G+LL+ C H +D+ E + KKL ++ + L+N+YA RW++A+ R
Sbjct: 647 VVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRR 706
Query: 424 AMETRGVKKYPGWSFVE 440
M+ GVKK PG S +E
Sbjct: 707 KMKELGVKKMPGCSLIE 723
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 117/410 (28%), Positives = 192/410 (46%), Gaps = 63/410 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++F A S LGN+ Y+ K+ +++ +P +F +N +++ Y+K K + LF ++ G+
Sbjct: 181 LMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLW 240
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD TYPF+ KA G L V I KTG + D ++ NSLI MY ++ A+++
Sbjct: 241 PDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKL 300
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD M T+ SVSWN M+ GY V+C +++A+
Sbjct: 301 FDEMTTRDSVSWNVMISGY-------------------------------VRCRRFEDAI 329
Query: 181 VIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
F EM+ G+ K +E T+VS L AC L L+ G + Y + K L T + +L+DM
Sbjct: 330 NTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNY-VRKELGFTTRIDNALLDM 388
Query: 240 YAKCGAIKEALIVFHGVEKHQ-----------------------------SDVLIWNAMI 270
YAKCG + A +F + DV++W AMI
Sbjct: 389 YAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMI 448
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
G +++ LF EMQI + PD+ T + LL+ CA G + + + L + +
Sbjct: 449 NGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIT 508
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
+++ S+ G V ++ E ++ + TAS S++ G +GK
Sbjct: 509 MDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWT-SIICGLAMNGK 557
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 160/417 (38%), Positives = 251/417 (60%), Gaps = 6/417 (1%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKREL--AVAV 85
I W + + Y ++ +++ + F +M AGV P+H+T+ L A A ++
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSL 116
Query: 86 HAQIAKTGYES-DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
H K G ++ + + +LI MY C + +AR+VF + K SVSWN+ML+G+ + GE
Sbjct: 117 HGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGE 176
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
+ +A Q+F+ MP R+ +SW+ALI+G +K G ++AL F +M+ G A+ V++++VL A
Sbjct: 177 IELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAA 236
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
CA LGAL G + R+++ + + + SLIDMY++CG I+ A VF V+ + ++
Sbjct: 237 CADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVF--VKMAKRTLV 294
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
WN++I G A++GF ESLE F MQ G PD +++ G L+AC+H GLV + F ++
Sbjct: 295 SWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNM 354
Query: 325 GK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+ P+ EHY C+VD RAG++ +A I +MP++P +LGSLL C HG ++L
Sbjct: 355 KSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNL 414
Query: 384 AEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
AE + K L +L P+ D YV LSN+YA +WD A R M+ RGV+K PG+S VE
Sbjct: 415 AERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVE 471
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 133/297 (44%), Gaps = 35/297 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + ++ + W +I G K +++ F +M R+GV+ D+++ +
Sbjct: 175 GEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVL 234
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L L + VH + ++ ++ ISNSLI MY CG I +AR+VF M + V
Sbjct: 235 AACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLV 294
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS++ G+A ++G+ E+L F M+ G
Sbjct: 295 SWNSIIVGFA--------------------------VNGFA-----DESLEFFYAMQKEG 323
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKEA 249
K + V+ L AC+H G +++G + M ++ + ++D+Y + G +++A
Sbjct: 324 FKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDA 383
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
L + + ++V++ +++ HG V + L + + P+ + LLS
Sbjct: 384 LNMIEEMPMKPNEVVL-GSLLAACRTHGDVNLAERLMK--HLFKLDPEGDAYYVLLS 437
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 33/202 (16%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G I+++ +V ++ + WN++I G++ + ++S+ F M + G PD ++Y
Sbjct: 273 SRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSY- 331
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIH--------------MYGSCGD 113
L HA + G E LF + +H +YG G
Sbjct: 332 ----------TGALTACSHAGLVNKGLE--LFDNMKSVHKITPRIEHYGCIVDLYGRAGR 379
Query: 114 IVYAREVFDGMPTKMS-VSWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALID 168
+ A + + MP K + V S+L G++N+A + +F+L PE + + L +
Sbjct: 380 LEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPEGDAY-YVLLSN 438
Query: 169 GYVKCGDYKEALVIFEEMRDVG 190
Y G + A + M+ G
Sbjct: 439 IYAAIGKWDGANNVRRTMKARG 460
>gi|357142551|ref|XP_003572610.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 454
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 162/362 (44%), Positives = 223/362 (61%), Gaps = 5/362 (1%)
Query: 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
A HAQ K G + ++NSL+ +Y + G + +AR VFD SWN+M+ GY K
Sbjct: 95 APVAHAQALKCGALAHSVVTNSLLKLYCTLGLLPHARRVFDSGAALDVASWNTMVSGYGK 154
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
G++ AR+VF MP RN+VSWSA+ID V ++ EAL +F++M G K + V LVS+
Sbjct: 155 SGDLAAAREVFGRMPGRNLVSWSAMIDALVHAEEFGEALSVFDQMMREGFKPDVVVLVSM 214
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLS---LTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
L ACAHLGA+ +GR +Y+ +G + + ++T+L+DMY KCG ++EA VF GV
Sbjct: 215 LKACAHLGAVKRGRWAHQYLETEGFAGRQRNVMVETALVDMYCKCGCMEEAWCVFDGVR- 273
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
DV++WN+MIGGLAM+G +LELF M G P++ TF G L AC H G V E
Sbjct: 274 -YRDVVLWNSMIGGLAMNGHGDRALELFQRMLQEGFVPNQSTFAGALCACTHTGHVDEGR 332
Query: 319 YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNH 378
FKS+ G+ P+ EHY C+ D L RAG+V EA + MP+EP AS G+L+ C H
Sbjct: 333 EIFKSMWHHGIEPQREHYGCLADLLGRAGRVGEAEAVLLDMPMEPHASQWGALMLSCQMH 392
Query: 379 GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSF 438
+ + E VGK+L+EL+P H GRY L N+YA+ WD+AR R+ M +G KK G S
Sbjct: 393 NDITVGERVGKRLIELEPHHGGRYAILFNLYAVNGLWDDARAIRQMMVEKGAKKDAGLSL 452
Query: 439 VE 440
VE
Sbjct: 453 VE 454
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 123/303 (40%), Gaps = 70/303 (23%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKN-----------PNK------------ 46
LG + ++ +V + + WNT++ GY KS + P +
Sbjct: 124 LGLLPHARRVFDSGAALDVASWNTMVSGYGKSGDLAAAREVFGRMPGRNLVSWSAMIDAL 183
Query: 47 --------SISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGY---E 95
++S+F +M+R G PD + + KA L + H + G+ +
Sbjct: 184 VHAEEFGEALSVFDQMMREGFKPDVVVLVSMLKACAHLGAVKRGRWAHQYLETEGFAGRQ 243
Query: 96 SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELM 155
++ + +L+ MY CG + A VFDG+ + V WNSM+ G A G + A ++F+ M
Sbjct: 244 RNVMVETALVDMYCKCGCMEEAWCVFDGVRYRDVVLWNSMIGGLAMNGHGDRALELFQRM 303
Query: 156 PERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGR 215
L +G+V N+ T LCAC H G +D+GR
Sbjct: 304 ----------LQEGFVP---------------------NQSTFAGALCACTHTGHVDEGR 332
Query: 216 MMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI--KEALIVFHGVEKHQSDVLIWNAMIGGL 273
+ + M G+ L D+ + G + EA+++ +E H S W A++
Sbjct: 333 EIFKSMWHHGIEPQREHYGCLADLLGRAGRVGEAEAVLLDMPMEPHASQ---WGALMLSC 389
Query: 274 AMH 276
MH
Sbjct: 390 QMH 392
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 162/428 (37%), Positives = 247/428 (57%), Gaps = 4/428 (0%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y+ V + + NP F +NT+IR ++ +P ++ +FV+M R V PD T+PF KA
Sbjct: 81 YALSVFNRIPNPSTFGYNTMIRAHTLLSSPLAALVIFVRMRRLSVPPDTHTFPFCLKACS 140
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
L LA +H+Q K G+ +DLF+ N+LIH+Y + +A +VF+ K VS+N+
Sbjct: 141 LLPALSLAQTLHSQAFKFGFGADLFVCNTLIHVYSVNKHLHHACQVFNETSLKDVVSYNA 200
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY-KEALVIFEEMRDVGSKA 193
++ G+ K G+ + AR++F+ MP R+ VSW L+ GY + GD +A+ +F M +
Sbjct: 201 LIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDLCMDAIQLFNRMLISTVRP 260
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+ + LVS L ACA LG L+QG+ + Y+ + + L T L+D+YAKCG I+ A +F
Sbjct: 261 DNIALVSALSACAQLGELEQGKSIHVYIKQNRIPINAFLSTGLVDLYAKCGCIETAREIF 320
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313
++ WNA++ GL MHG SL F+ M GI PD ++FLG+L C H GL
Sbjct: 321 E--SSPDKNLFTWNALLVGLGMHGRGHLSLHYFSRMIEAGIKPDGVSFLGILVGCGHAGL 378
Query: 314 VMEAWYFFKSLGKRGMVPKS-EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
V EA FF+ + VP+ +HY CM D L RAG + EA E I +MP+ + G +L
Sbjct: 379 VCEARNFFQEMEVVYRVPRELKHYGCMADLLGRAGLIREAMEMIERMPMGGDVFVWGGVL 438
Query: 373 TGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432
GC HG +++AE + ++ L P+ DG Y ++++YA RW++ R M +R VKK
Sbjct: 439 GGCRIHGNVEIAEKAAENVMALNPEDDGVYSIMADIYANAGRWEDVARIRRLMHSRQVKK 498
Query: 433 YPGWSFVE 440
PG S V+
Sbjct: 499 NPGCSLVQ 506
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 25/199 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY---- 66
G I+ + ++ + +F WN ++ G + S+ F +M+ AG+ PD +++
Sbjct: 311 GCIETAREIFESSPDKNLFTWNALLVGLGMHGRGHLSLHYFSRMIEAGIKPDGVSFLGIL 370
Query: 67 ------PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
+ +A + E+ V ++ G +DL G G I A E+
Sbjct: 371 VGCGHAGLVCEARNFFQEMEVVYRVPRELKHYGCMADLL---------GRAGLIREAMEM 421
Query: 121 FDGMPTKMSV-SWNSMLDGYAKCGEMNMARQ----VFELMPERNVVSWSALIDGYVKCGD 175
+ MP V W +L G G + +A + V L PE + V +S + D Y G
Sbjct: 422 IERMPMGGDVFVWGGVLGGCRIHGNVEIAEKAAENVMALNPEDDGV-YSIMADIYANAGR 480
Query: 176 YKEALVIFEEMRDVGSKAN 194
+++ I M K N
Sbjct: 481 WEDVARIRRLMHSRQVKKN 499
>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 165/430 (38%), Positives = 245/430 (56%), Gaps = 1/430 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + + + + W T+I GY + + +++ ++ MLR GV P+ + L
Sbjct: 264 GLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLI 323
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A GR H I +TG++ FI ++IH Y +CG+I A F+
Sbjct: 324 SACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVS 383
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+++ G+ + G + ARQ+F+ MPER+V SWS++I GY + AL +F EM G
Sbjct: 384 SWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGG 443
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ NE+T+VSV A A LG L +GR Y++ + L L +LIDMYAKCG+I AL
Sbjct: 444 VQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIAL 503
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F+ ++ S V WNA+I GLAMHG SL+LF+++Q V I P+ ITF+G+LSAC H
Sbjct: 504 QLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCH 563
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV +FK + + P +HY CM+D L RAG++ EA E I +MP++ + G
Sbjct: 564 AGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKMPMKADVVIWG 623
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C HG +++ E + L +L H V LSN+YA RWD+A R AM+++
Sbjct: 624 TLLAACRTHGNVEIGERAAENLAKLDISHGAGRVLLSNIYADAGRWDDAFLVRRAMQSQR 683
Query: 430 VKKYPGWSFV 439
+KK PG S V
Sbjct: 684 MKKSPGCSGV 693
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 109/402 (27%), Positives = 195/402 (48%), Gaps = 38/402 (9%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
+ T++ G +++ ++I +F M AGV P+ +T + A + +HA
Sbjct: 152 YTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSF 211
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G E+ ++ +L+HMY C + AR +FD +P + V+WN ML+GY+K G +++AR
Sbjct: 212 KLGLEALNIVATNLVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARD 271
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+FE +P ++VVSW +IDGYV+ EAL ++ M G NEV +V ++ AC A
Sbjct: 272 LFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMA 331
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH-GVEKHQSDVLIWNAM 269
+ +G+ ++ G +Q ++I YA CG I A + F G + H S WNA+
Sbjct: 332 VSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSS---WNAL 388
Query: 270 IGGLAMHGFVKE-------------------------------SLELFTEMQIVGITPDE 298
I G +G +++ +L+LF EM G+ P+E
Sbjct: 389 ISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNE 448
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
IT + + SA A G +ME + + + + A ++D ++ G +T A + +
Sbjct: 449 ITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYE 508
Query: 359 MPLE-PTASMLGSLLTGCMNHGKLDLAEIVGKKL--VELQPD 397
+ + S +++ G HG +++ + +L V ++P+
Sbjct: 509 IQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPN 550
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 165/347 (47%), Gaps = 40/347 (11%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+H+ + K+G S++F+ NSLI Y C I AR +FD VS N ML GY K G
Sbjct: 74 IHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDTCSVLDPVSCNIMLAGYVKSGS 133
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
++ AR +FE MP + VS++ ++ G + + EA+ +F++MR G NEVTL SV+ A
Sbjct: 134 LDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISA 193
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
+H+G + RM+ GL + T+L+ MY C ++ A ++F E + +V+
Sbjct: 194 YSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCSSLGNARVLFD--EIPERNVV 251
Query: 265 IWNAMIGGLAMHGFVK-------------------------------ESLELFTEMQIVG 293
WN M+ G + G V E+L ++ M G
Sbjct: 252 TWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTG 311
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAY 353
+ P+E+ + L+SAC V E F + + G A ++ + G++ A+
Sbjct: 312 VGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAF 371
Query: 354 -EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399
+F ++ + S +L++G + +G ++ A ++L + P+ D
Sbjct: 372 LQF--ELGSKDHVSSWNALISGFVRNGMIEQA----RQLFDEMPERD 412
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F +D E+TLVS L +C+ L AL QG+ + + GL + ++ SLI Y K
Sbjct: 40 FNGNKDTQHSDYELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVK 99
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
C I A +F D + N M+ G G + + LF +M I G +
Sbjct: 100 CRLISNARSLFDTCSV--LDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVM 157
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQV 349
GL A +EA FK + G++P A ++ A S G +
Sbjct: 158 GL----AQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGI 200
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 162/427 (37%), Positives = 255/427 (59%), Gaps = 8/427 (1%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFLAKASGRLA 77
+ + + + WN +I GY K + +I++F +M +G+ PD T A L
Sbjct: 194 LFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALK 253
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+ EL +H + + + I N+L+ MY CG + AR VF+ MP+K + W +M+
Sbjct: 254 RLELGKKIHHYV-RDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVS 312
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
GYA CGE+ AR++FE P R+VV W+A+I+GYV+ + EA+ +F EM+ K ++
Sbjct: 313 GYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFI 372
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+VS+L CA GA++QG+ + ++ + + + + T+LI+MYAKCG I++AL +F+G+
Sbjct: 373 VVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGL- 431
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
D W ++I GLAM+G ++LELF++M+ G+ PD+ITF+G+LSAC+HGGLV E
Sbjct: 432 -RVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEG 490
Query: 318 WYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEP---TASMLGSLLT 373
FF S+ + PK EHY C+VD L RAG + EA E I ++P E T + GSLL+
Sbjct: 491 RKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLS 550
Query: 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
C +G +++ E V K+LV+ + + L+N+YA RW++ R M+ GVKK
Sbjct: 551 ACRIYGNVEMGERVAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKT 610
Query: 434 PGWSFVE 440
PG S +E
Sbjct: 611 PGCSSIE 617
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/436 (26%), Positives = 197/436 (45%), Gaps = 64/436 (14%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++F + GN++Y+ K+ ++ P + +N +I+ ++K N +++ LF K+ G+
Sbjct: 75 LMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLW 134
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+ TYPF+ KA G L + A + + KTG E D ++ NSLI MY + +
Sbjct: 135 PDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKML 194
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD MP + +SWN M+ GY KC A VF M E +
Sbjct: 195 FDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEES--------------------- 233
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
G +E T+VS L AC L L+ G+ + Y+ D + T + +L+DMY
Sbjct: 234 ---------GLMPDEATVVSTLSACTALKRLELGKKIHHYVRD-NVKFTPIIGNALLDMY 283
Query: 241 AKCGAIKEALIVFHGVEKHQ-----------------------------SDVLIWNAMIG 271
KCG + A VF + DV+IW AMI
Sbjct: 284 CKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMIN 343
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
G E++ LF EMQI + PD+ + LL+ CA G + + + + + + +
Sbjct: 344 GYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPI 403
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA-EIVGK- 389
+ +++ ++ G + +A E + ++ TAS S++ G +GK A E+ K
Sbjct: 404 DAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWT-SIICGLAMNGKTSKALELFSKM 462
Query: 390 KLVELQPDHDGRYVGL 405
K ++PD D ++G+
Sbjct: 463 KQAGVRPD-DITFIGV 477
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 171/414 (41%), Positives = 242/414 (58%), Gaps = 4/414 (0%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
F W ++ + ++ +++++F M G D + A + + H
Sbjct: 235 FTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGL 294
Query: 89 IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
+ + G S + + N LIHMY SC D+V AR +FD + SWNSM+ GY K G + A
Sbjct: 295 VVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDA 354
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
+ +F++MP+++ VSWSA+I G V EAL +F+ MR K ++VTLVSV+ AC++L
Sbjct: 355 KALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNL 414
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
AL+QG+++ Y+ ++T+ L TSLIDMY KCG ++ AL VF +E+ + WNA
Sbjct: 415 SALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGTPC--WNA 472
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGIT-PDEITFLGLLSACAHGGLVMEAWYFFKSL-GK 326
+I GLAM+G V SL++F+EM+ G P+EITF G+LSAC HGGLV E FFK + K
Sbjct: 473 VIVGLAMNGLVTRSLDMFSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQNK 532
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
+VP HY CMVD L RAG V EA + I MP+ P G+LL C HG ++ E
Sbjct: 533 YQIVPNIRHYGCMVDLLGRAGYVREAEDMIQSMPMSPDVPAWGALLGACWKHGDSEVGER 592
Query: 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
VGKKLV+L PDHDG LSN+YA W + R +M+ + V K G S VE
Sbjct: 593 VGKKLVKLDPDHDGFQTMLSNIYASEGMWQCVKDLRGSMKQQHVAKVAGCSMVE 646
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/403 (26%), Positives = 181/403 (44%), Gaps = 48/403 (11%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+ +S ++ + +P F NT+++ + P+ L+ M A PD T+P LA A
Sbjct: 59 LHHSLQLFGLVRSPNAFTCNTLLKAALRQGFPHLCFPLYASMPAA---PDTYTHPLLAAA 115
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+ VH+ K G+ +L++ N+L+HMY +CG + AR VFD P +VSW
Sbjct: 116 CAARGDVREGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVSW 175
Query: 133 NSMLDGYAKCGEMNMARQVFELMPE-------------------------------RNVV 161
N++L Y + G++ A +VF MPE R+
Sbjct: 176 NTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDAF 235
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
+W+A++ + + + EAL +F +MR+ G +E +VSV+ ACA G + G + +
Sbjct: 236 TWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLV 295
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
+ GL + +Q LI MY+ C + A +F E D WN+MI G +G V++
Sbjct: 296 VRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGES--LDHFSWNSMISGYLKNGRVED 353
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
+ LF M D +++ +++ C H EA F S+ + P ++
Sbjct: 354 AKALFDVMP----DKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVIS 409
Query: 342 ALSRAGQVTEA---YEFICQMPLEPTASMLGSLL-----TGCM 376
A S + + +E+I + T + SL+ GCM
Sbjct: 410 ACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCM 452
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 166/441 (37%), Positives = 268/441 (60%), Gaps = 4/441 (0%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+F A S G+I+Y+ + + + +P ++ WNT+IRG+S+S P+ +ISLFV ML + V
Sbjct: 63 VLTFCASSS-GDINYAYLLFTTIPSPNLYCWNTIIRGFSRSSTPHLAISLFVDMLCSSVL 121
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P LTYP + KA +L +H ++ K G E D FI N++I+MY + G + AR V
Sbjct: 122 PQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQNTIIYMYANSGLLSEARRV 181
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD + V+ NSM+ G AKCGE++ +R++F+ MP R V+W+++I GYV+ EAL
Sbjct: 182 FDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEAL 241
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F +M+ + +E T+VS+L ACAHLGAL G + Y+ L + + T++IDMY
Sbjct: 242 ELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMY 301
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
KCG I +A+ VF + WN++I GLA++G+ ++++E F++++ + PD ++
Sbjct: 302 CKCGVIVKAIEVFEASPTR--GLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVS 359
Query: 301 FLGLLSACAHGGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+G+L+AC + G V +A YF + K + P +HY CMV+ L +A + EA + I M
Sbjct: 360 FIGVLTACKYIGAVGKARDYFSLMMNKYEIEPSIKHYTCMVEVLGQAALLEEAEQLIKGM 419
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
PL+ + GSLL+ C HG +++A+ +++ EL P Y+ +SNV A +++EA
Sbjct: 420 PLKADFIIWGSLLSSCRKHGNVEIAKRAAQRVCELNPSDASGYLLMSNVQAASNQFEEAM 479
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R M R +K PG S +E
Sbjct: 480 EQRILMRERLAEKEPGCSSIE 500
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 144/322 (44%), Gaps = 16/322 (4%)
Query: 85 VHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
+HA I KTG + S L S GDI YA +F +P+ WN+++ G+++
Sbjct: 44 IHAHIIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNLYCWNTIIRGFSRSS 103
Query: 144 EMNMARQVF------ELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
++A +F ++P+R +++ ++ Y + G + + + +G + ++
Sbjct: 104 TPHLAISLFVDMLCSSVLPQR--LTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFI 161
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+++ A+ G L + R + ++D L + S+I AKCG + ++ +F +
Sbjct: 162 QNTIIYMYANSGLLSEARRVFDELVD----LDVVACNSMIMGLAKCGEVDKSRRLFDNMP 217
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+ WN+MI G + + E+LELF +MQ + P E T + LLSACAH G +
Sbjct: 218 TRTR--VTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHG 275
Query: 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
+ + + ++D + G + +A E P + ++ +N
Sbjct: 276 EWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLALN 335
Query: 378 HGKLDLAEIVGK-KLVELQPDH 398
+ E K + +L+PDH
Sbjct: 336 GYERKAIEYFSKLEASDLKPDH 357
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 179/499 (35%), Positives = 273/499 (54%), Gaps = 75/499 (15%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPN-KSISLFVKMLRAGVSPDHLTYPFLAKAS 73
Y+ +L+ L P + +N +IRG + S N + + + ++ +ML G+ PD+ T PF+ KA
Sbjct: 76 YALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKAC 135
Query: 74 GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
VH Q K G SD+++SN+L+ MY C I AR+VFD P + VSW
Sbjct: 136 AESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWT 195
Query: 134 SMLDGYAK--------------CGE---------------------MNMARQVFELMPER 158
+M+ GY K CGE + + R++ +
Sbjct: 196 TMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRN 255
Query: 159 NVVSW-----SALIDGYVKCGD-------------------------------YKEALVI 182
+ V+ +AL+D Y+KCGD +KE+L +
Sbjct: 256 SNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYM 315
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F +M+ +G K ++VTLV+VL +CA+LG L+ G+ + Y+ + + +L+DMYAK
Sbjct: 316 FRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAK 375
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG+I +A VF + ++ DV + AMI GLAMHG ++L+LF+EM +GI PDE+TF+
Sbjct: 376 CGSIDQACWVFQAM--NRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFV 433
Query: 303 GLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
G+L+AC+H GLV E +F+ + + P+ EHY CMVD L RAG + EA EFI MP+
Sbjct: 434 GVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPI 493
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
EP A +LG+LL C HGK++L E V KK+ +++P DG YV +SN+Y+ RW +A
Sbjct: 494 EPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKL 553
Query: 422 REAMETRGVKKYPGWSFVE 440
R+ M+ R ++K PG S +E
Sbjct: 554 RKTMKERNLEKTPGCSSIE 572
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 123/274 (44%), Gaps = 39/274 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+ +++ KV + + WN++I G ++ +S+ +F KM R GV PD +T +
Sbjct: 276 GDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVL 335
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ L EL VHA + + +D FI N+L+ MY CG I A VF M K
Sbjct: 336 NSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVY 395
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
S+ +M+ G A G+ +AL +F EM +G
Sbjct: 396 SYTAMIVGLAMHGQGG-------------------------------KALDLFSEMPKMG 424
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS----LIDMYAKCGAI 246
+ +EVT V VL AC+H+G +++GR +Y D L Q ++D+ + G I
Sbjct: 425 IEPDEVTFVGVLTACSHVGLVEEGR---KYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLI 481
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
EA + + D + A++G +HG V+
Sbjct: 482 NEAEEFIRNMPI-EPDAFVLGALLGACKIHGKVE 514
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 170/447 (38%), Positives = 267/447 (59%), Gaps = 12/447 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+F A S G++ ++ K+ H+ +P I +NT+I+ +I++F + R G+
Sbjct: 43 LLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMIKALLLRGEFLNAIAVFSAIFRNGIH 102
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD T P++ KAS R+ L ++HA K G + F+ NSL+ MY S ++ AR+V
Sbjct: 103 PDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQV 162
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD MP +VSW M+ GYA G+++ AR++F++ ++ W A+I GYV+ +KE L
Sbjct: 163 FDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGL 222
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F M+ + +E +V++L ACAH+GALD G + RY+ GL LTL + T LIDMY
Sbjct: 223 HMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMY 282
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG + A +F+ E Q D + WNAMI G+AM G + +++LF EM+ GI PD IT
Sbjct: 283 AKCGHLDLAKYLFN--EMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNIT 340
Query: 301 FLGLLSACAHGGLVMEA---WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
F+ +L+AC++ G+V E W ++ K + PKSEHY C++D LSR G+ EA I
Sbjct: 341 FIAVLAACSNSGMVDEGIRIWNRMSTVHK--IEPKSEHYGCVIDLLSRVGRFEEAEGVIQ 398
Query: 358 QMP--LEPTASMLG--SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413
++P P+ + + L+ C HG+ AE+ ++L +L+ H G YV LSN+YA
Sbjct: 399 RLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLE-RHSGAYVLLSNMYAALG 457
Query: 414 RWDEARTTREAMETRGVKKYPGWSFVE 440
+ ++A+ R M+ +GV+K PG S ++
Sbjct: 458 KHEDAKRVRNMMKLKGVEKVPGCSSIK 484
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 114/280 (40%), Gaps = 12/280 (4%)
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSC--GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
HAQ+ K+G + F+ + L++ G + +A ++F + +N+M+ G
Sbjct: 25 HAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMIKALLLRG 84
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR----DVGSKANEVTLV 199
E A VF + + + + +K + + E + +GS NE
Sbjct: 85 EFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGN 144
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
S+L + R + D+ L+ T +I YA G + A +F
Sbjct: 145 SLLVMYRSFDNMRSARQVF----DEMPELSAVSWTVMIYGYANMGDVDTARELFDMAT-- 198
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
D IW AMI G + KE L +F MQ+ + PDE + +LSACAH G + +
Sbjct: 199 VKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIW 258
Query: 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
+ LG+ G+ ++D ++ G + A +M
Sbjct: 259 IHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEM 298
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 166/453 (36%), Positives = 266/453 (58%), Gaps = 15/453 (3%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGY------SKSKNPNKSISLFVKM 54
+L F + S + +Y+ V + P + +N +IR Y S K++ L+ +M
Sbjct: 60 LLYFCSFSNYASFNYANNVFHMIKYPELRVYNIMIRSYGCIEGGDDSNCCYKALMLYKQM 119
Query: 55 LRAGVSPDHLTYPFLAKASGRLA-KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113
L G+ P++LT+PFL K RL + +HA + K G+ +D+F+ NSLI ++ + G
Sbjct: 120 LNKGIVPNNLTFPFLVKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLISLFMNFGL 179
Query: 114 IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKC 173
AR+VFD M + VSWNSM+ GY + GE+ MA +F M RN+++W+++I G V+
Sbjct: 180 SKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQA 239
Query: 174 GDYKEALVIFEEMR----DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229
G KE+L IF EM+ D K +++T+ SVL ACA LG++D G+ + Y+ +
Sbjct: 240 GHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIECD 299
Query: 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
+ + T+L++MY KCG +++A+ +F+ + + D W AMI A+HGF K++ + F EM
Sbjct: 300 VVIGTALVNMYGKCGDVQQAIEIFNDMP--EKDASAWTAMISVFALHGFGKKAFDCFLEM 357
Query: 290 QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQ 348
+ G+ P+ +TF+GLLSAC+H GLV + F + + + P+ HYACMVD LSRA
Sbjct: 358 EKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQIYHYACMVDILSRARL 417
Query: 349 VTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNV 408
EA I MP++P + G+LL GC HG + L E V L++L+P + Y+ L ++
Sbjct: 418 FDEALFLIRSMPMKPDVYVWGALLGGCQMHGNIKLGEKVAHYLIDLEPHNHAFYINLCDI 477
Query: 409 YAIFKRWDEARTTREAMETRGVK-KYPGWSFVE 440
Y ++D A+ R +M+ RG++ K PG S +E
Sbjct: 478 YVKAGKYDAAKRIRNSMKERGIETKIPGCSIIE 510
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 157/431 (36%), Positives = 258/431 (59%), Gaps = 8/431 (1%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y + + ++ P F +N +IRGY + +S + M + GV P T+ L KA G
Sbjct: 98 YPLSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACG 157
Query: 75 RLAKRELAVAVHAQ-IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
L +H Q I G+ DL + NS+I MY CG + R+VFD MP + +SW
Sbjct: 158 AKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWT 217
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
++ Y K G M A ++F+ +P +++V+W+ ++ G+ + +EA++ FE+M++ G +
Sbjct: 218 ELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVET 277
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKCGAIKEAL 250
+E+TL+ V+ ACA LGA +R + +K G ++ + ++LIDMY+KCG++ +A
Sbjct: 278 DEITLIGVISACAQLGAAKYADW-IRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAY 336
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF G++ + +V +++MI G AMHG V ++++LF EM I P+ +TF+G+L+AC+H
Sbjct: 337 RVFQGMK--ERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSH 394
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
G+V + W F+ + K G+ P ++HY CMVD L RAG++ EA+E + MP+EP + G
Sbjct: 395 AGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWG 454
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C H D+A I L EL+P G Y+ L+N+YA RW++ T R+ M TRG
Sbjct: 455 ALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRG 514
Query: 430 VKKYPGWSFVE 440
++K P +S++E
Sbjct: 515 LRKNPAFSWIE 525
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 126/277 (45%), Gaps = 39/277 (14%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
SA GN++ + ++ L + W ++ G++++ P ++I F KM GV D +
Sbjct: 221 SAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEI 280
Query: 65 TYPFLAKASGRLAKRELAVAVH--AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
T + A +L + A + A+ ++ G + + + ++LI MY CG + A VF
Sbjct: 281 TLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQ 340
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
GM + S++SM+ G+A G ++ +A+ +
Sbjct: 341 GMKERNVYSYSSMILGFAMHGRVH-------------------------------DAMKL 369
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYA 241
F+EM K N VT + VL AC+H G ++QG + M G+ + T ++D+
Sbjct: 370 FDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLG 429
Query: 242 KCGAIKEA--LIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ G ++EA L+ +E H +W A++G +H
Sbjct: 430 RAGRLQEAHELVKTMPIEPHGG---VWGALLGACRIH 463
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 178/436 (40%), Positives = 251/436 (57%), Gaps = 8/436 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG Y+ V P IF++N VI S S NP ++ISLF + G+ PD ++PF+
Sbjct: 75 LGLSSYAYSVFISNHRPSIFFYNNVIWALSSS-NPTRAISLFNAIRLLGMPPDSYSFPFV 133
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA L+ + +H Q +G +S + SL+ MY SC + AR++FDG K +
Sbjct: 134 LKAVVCLSAVHVGKQIHCQAIVSGLDSHPSVVTSLVQMYSSCAHLSSARKLFDGATFKHA 193
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPE--RNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
WN+ML GYAK G M+ AR +FE MPE R+VVSW+ LI GY + EA+ +F M
Sbjct: 194 PLWNAMLAGYAKVGNMSNARNLFECMPEKDRDVVSWTTLISGYTQTHSPNEAITLFRIML 253
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM--IDKGLSLTLPLQTSLIDMYAKCGA 245
+ +E+ +++VL ACA LGAL G + Y+ + L T+PL SLIDMYAK G
Sbjct: 254 LQNVQPDEIAILAVLSACADLGALQLGEWIHNYIEKHNNKLRKTVPLCNSLIDMYAKSGD 313
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
I +A +F + KH++ ++ W +I GLA+HGF KE+L++F+ M+ + P+E+T + +L
Sbjct: 314 ISKARQLFQNM-KHKT-IITWTTVISGLALHGFGKEALDVFSCMEKARVKPNEVTLIAVL 371
Query: 306 SACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
SAC+H GLV F S+ K G+ PK EHY CM+D L RAG + EA E + MP E
Sbjct: 372 SACSHVGLVELGRNIFTSMRSKYGIEPKIEHYGCMIDLLGRAGYLQEAMELVRVMPSEAN 431
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
A++ GSLL+ +G LA + L L+P + G Y LSN YA W EA R+
Sbjct: 432 AAVWGSLLSASNRYGDAALAAEALRHLSVLEPHNCGNYSLLSNTYAALGWWKEAAMVRKV 491
Query: 425 METRGVKKYPGWSFVE 440
M +K PG SFVE
Sbjct: 492 MRDTCAEKVPGVSFVE 507
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 172/440 (39%), Positives = 262/440 (59%), Gaps = 17/440 (3%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
++ Y+C+V + NP + +NT+I+ + + ++ +FVKML++ + PD+ T P++ K
Sbjct: 56 SLTYACRVFEQIQNPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLK 115
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A G +H +K G D+++ NSL+ MY GD+V AR VFD +P+ VS
Sbjct: 116 ACGTFHDCSFGKMIHGYSSKLGLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVVS 175
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
W+ M+ GYAK G+++ AR F+ PE++ W A+I GYV+ +KE+L +F M+
Sbjct: 176 WSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDI 235
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+E VS+L ACAHLGAL+ G + +++ K + L++ L TSL+DMYAKCG ++ A
Sbjct: 236 VPDESIFVSILSACAHLGALEIGVWIHQHLNQLKLVPLSVRLSTSLLDMYAKCGNLELAK 295
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F + + DV+ WNAMI G+AMHG K +L+LF +M+ VG+ PD+ITF+ + +AC++
Sbjct: 296 RLFDSM--NMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGVKPDDITFIAVFTACSY 353
Query: 311 GGLVMEAWYFF-KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
G+ E K +VPKSEHY C+VD LSRAG EA I ++ T S G
Sbjct: 354 SGMAYEGLMLLDKMCSVYNIVPKSEHYGCLVDLLSRAGLFEEAMVMIRKI----TNSWNG 409
Query: 370 S--------LLTGCMNHGKLDLAEIVGKKLVELQPD-HDGRYVGLSNVYAIFKRWDEART 420
S L+ C NHG+ LAE+ +K+++L H G YV LSN+YA + +AR
Sbjct: 410 SEETLAWRAFLSACCNHGETQLAELAAEKVLQLDNHIHSGVYVLLSNLYAASGKHSDARR 469
Query: 421 TREAMETRGVKKYPGWSFVE 440
R+ M+ +G K PG S VE
Sbjct: 470 VRDMMKIKGTNKAPGCSSVE 489
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 166/416 (39%), Positives = 244/416 (58%), Gaps = 5/416 (1%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAG--VSPDHLTYPFLAKASGRLAKRELAVAV 85
+ WNT+I GY +S P +++ LF +++ G V PD +T ++ EL +
Sbjct: 187 VVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRL 246
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
H + G + + N+++ MY CG + A+ VF+ + K VSW +M+ G+A+ G M
Sbjct: 247 HEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMM 306
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
AR +F+ MPER+V W+AL+ GYV+ KEA+ +F EM++ NE+T+V++L AC
Sbjct: 307 EDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSAC 366
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
+ LGAL+ G + Y+ L L++ L TSL+DMYAKCG IK+A+ +F E + L
Sbjct: 367 SQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFK--EIPDKNALT 424
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
W AMI GLA HG E++E F M +G+ PDEITF+G+LSAC H GLV E FF +
Sbjct: 425 WTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMH 484
Query: 326 KR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
++ + K +HY+CM+D L RAG + EA + + MP++P A + G+L C HG + L
Sbjct: 485 EKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMHGNITLG 544
Query: 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
E KLVEL P G YV L+N+YA +A R M GV+K PG S +E
Sbjct: 545 EKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIE 600
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 172/368 (46%), Gaps = 61/368 (16%)
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PDHLT+PFL KA RL R AV + K G+ +D+F+ N+ +H + G +V AR +
Sbjct: 119 PDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRL 178
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD P + VSWN+++ GY + G + R+ EL W + DG
Sbjct: 179 FDESPARDVVSWNTLIGGYVRSG---LPREALELF-------WRLVEDGK---------- 218
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+ +EVT++ + CA +G L+ G+ + ++ KG+ T+ L +++DMY
Sbjct: 219 ---------AVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMY 269
Query: 241 AKCGAIKEALIVFHGV-----------------------------EKHQSDVLIWNAMIG 271
KCG+++ A VF + E + DV WNA++
Sbjct: 270 VKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMA 329
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
G + KE++ LF EMQ + P+EIT + LLSAC+ G + + + + +
Sbjct: 330 GYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYL 389
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL 391
+VD ++ G + +A ++P + A +++ G NHG D A +++
Sbjct: 390 SVALGTSLVDMYAKCGNIKKAICIFKEIP-DKNALTWTAMICGLANHGHADEAIEYFQRM 448
Query: 392 VE--LQPD 397
++ LQPD
Sbjct: 449 IDLGLQPD 456
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 136/298 (45%), Gaps = 35/298 (11%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG ++ + + + +F WN ++ GY ++K ++I+LF +M + V P+ +T L
Sbjct: 303 LGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNL 362
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A +L E+ + VH I + + + SL+ MY CG+I A +F +P K +
Sbjct: 363 LSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNA 422
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
++W +M+ G A G + EA+ F+ M D+
Sbjct: 423 LTWTAMICGLANHGHAD-------------------------------EAIEYFQRMIDL 451
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKE 248
G + +E+T + VL AC H G + +GR M +K L + + +ID+ + G + E
Sbjct: 452 GLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDE 511
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
A + + + D ++W A+ MHG + +L M++V + P + LL+
Sbjct: 512 AEQLVNTMPM-DPDAVVWGALFFACRMHGNI--TLGEKAAMKLVELDPSDSGIYVLLA 566
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 159/454 (35%), Positives = 248/454 (54%), Gaps = 39/454 (8%)
Query: 26 PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAV 85
P F NT++R Y+ + ++I L++ M R GV ++ TYPF+ K V
Sbjct: 95 PNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVV 154
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC--- 142
H Q+ +TG+ SDLF+ +L+ MY CG+I A EVFD M + V W +M+ Y +
Sbjct: 155 HGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERP 214
Query: 143 ----------------------------------GEMNM--ARQVFELMPERNVVSWSAL 166
G M + AR VF+ M ERN +SW+++
Sbjct: 215 LKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWNSM 274
Query: 167 IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL 226
+ GY + G +AL +F +M+ N VT + ++ AC++LG+ GR + ++I +
Sbjct: 275 LSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKM 334
Query: 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELF 286
+ L+ +++DMY KCG + A+ +F+ E + DV WN +I G +HG KE+LELF
Sbjct: 335 DIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELF 394
Query: 287 TEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA 346
+ MQ+ G+ P++ITF +LSAC+H GL+ E F + K + P+ +HYACMVD L RA
Sbjct: 395 SRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMVDMLGRA 454
Query: 347 GQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLS 406
G + EA+ I ++P P+ + G+LL C HG +L EI L +L+P+H G YV +S
Sbjct: 455 GFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMS 514
Query: 407 NVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
N+YA +W E R+ M++RG+KK +S +E
Sbjct: 515 NIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIE 548
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 118/282 (41%), Gaps = 38/282 (13%)
Query: 85 VHAQIAKTGY--ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+H+ ++ G+ + F++ LI +Y GD+ AR +FD +
Sbjct: 44 IHSSLSTRGFLLHTPHFLAR-LIILYSKLGDLHSARTLFDHRHHHHHGHTQA-------- 94
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
N + ++ Y G EA+ ++ M+ +G N T VL
Sbjct: 95 ---------------PNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVL 139
Query: 203 CACA-HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
CA LGA+ G ++ ++ G L ++ +L+DMYAKCG I +A VF +
Sbjct: 140 KVCASELGAV-FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLI--R 196
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG----LVMEA 317
DV+ W AMI ++L LF +MQ G DEIT + + SA G + A
Sbjct: 197 DVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRA 256
Query: 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F + +R + + M+ ++ G+ T+A QM
Sbjct: 257 RLVFDRMEERNGIS----WNSMLSGYTQNGRPTDALSLFNQM 294
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 84/190 (44%), Gaps = 10/190 (5%)
Query: 11 GNIDYSCKVLSH--LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPF 68
G++D + ++ ++ L + WN +I GY + +++ LF +M GV P+ +T+
Sbjct: 352 GDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTS 411
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+ A + A + K ++ ++ M G G + A + +P++
Sbjct: 412 ILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRP 471
Query: 129 SVS-WNSML-----DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
S W ++L G + GE+ A +F+L PE + + + + Y +KE ++
Sbjct: 472 SDEVWGALLLACRIHGNTELGEI-AANNLFQLEPE-HTGYYVLMSNIYAASNKWKEVEMV 529
Query: 183 FEEMRDVGSK 192
+ M+ G K
Sbjct: 530 RQNMKSRGLK 539
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 175/501 (34%), Positives = 266/501 (53%), Gaps = 66/501 (13%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
+ S I ++ K+ + P WN + RGY ++ + ++ LF ++ R P+
Sbjct: 51 ITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNC 110
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGS------------- 110
T+P + K+ G+L VH K G++S+ F++ SLI MY
Sbjct: 111 FTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGE 170
Query: 111 ------------------CGDIVY-------------------------------AREVF 121
CGD+V ARE+F
Sbjct: 171 MHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARELF 230
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
D MP + ++SWN+ML+GYA GE+ M +VF+ MPERNV SW+ LI GYVK G + E L
Sbjct: 231 DKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLE 290
Query: 182 IFEEMRDVGSK-ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
F+ M G N+ TLV+VL AC+ LGALD G+ + Y G L + LIDMY
Sbjct: 291 SFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMY 350
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG I+ A++VF+ +++ D++ WN +I GLA+HG ++L +F M+ G PD +T
Sbjct: 351 AKCGVIENAVVVFNCLDR--KDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVT 408
Query: 301 FLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+G+LSAC H GLV + + +FKS+ +VP+ EHY CMVD L RAG + +A FI +M
Sbjct: 409 FVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKM 468
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P+EP A + +LL C + +++AE+ ++L+EL+P++ +V +SN+Y R ++
Sbjct: 469 PIEPDAVIWAALLGACRLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDLGRSEDVA 528
Query: 420 TTREAMETRGVKKYPGWSFVE 440
+ AM G +K PG S +E
Sbjct: 529 RLKIAMRDTGFRKLPGCSVIE 549
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 33/202 (16%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+ AQI G E + F++ + I I +AR++FD +P + +WN+M
Sbjct: 31 IQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMF-------- 82
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
GY++ G +++ +V+F E+ + N T ++ +
Sbjct: 83 -----------------------RGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKS 119
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
C L + +G + G + TSLIDMY+K G +++A VF E H+ +V+
Sbjct: 120 CGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFG--EMHERNVV 177
Query: 265 IWNAMIGGLAMHGFVKESLELF 286
+W A+I G + G V LF
Sbjct: 178 VWTAIINGYILCGDVVSGRRLF 199
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/442 (38%), Positives = 248/442 (56%), Gaps = 36/442 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ F A+S G++DY+ +V + NP F WNT+IRG +++ P K+ + +M G
Sbjct: 89 IIVFCAVSECGSMDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEV 148
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
D+ TY FL K G+L L +H + K G E +F+ N+L+HMYG DI
Sbjct: 149 LDNFTYSFLVKVCGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDI------ 202
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
A +FE MP+ +V+W+ +ID V CG YKEA+
Sbjct: 203 -------------------------EAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAI 237
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F M G K ++ T V L ACA LG LD GR + + GL + + SLIDMY
Sbjct: 238 ELFFRMLQSGLKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVSVSNSLIDMY 297
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI-TPDEI 299
AKCG ++ A +F+ ++ +++ WN MI GLAMHG E+LELF++M + TP+E+
Sbjct: 298 AKCGVVEAAYEIFNKMKGR--NIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEV 355
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
TFLG+L AC+HGG+V E +F + + + P +HY MVD L RAG V EAY I
Sbjct: 356 TFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKS 415
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP+E + + +LL C HG L+LAE V + L+EL+PDH YV L+N+YA +W++
Sbjct: 416 MPIESNSIVWRTLLAACRVHGNLELAEQVRQXLLELEPDHSSDYVLLANMYASAGQWNKV 475
Query: 419 RTTREAMETRGVKK-YPGWSFV 439
R++M RGV+K PG S++
Sbjct: 476 XRVRKSMHIRGVQKPKPGNSYI 497
>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
[Vitis vinifera]
gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/442 (38%), Positives = 250/442 (56%), Gaps = 35/442 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++ ALS G++DY+C + + F +NT++RG+ K N +++ + +M GV
Sbjct: 69 LVATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVK 128
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+ TYP L KA RL E + VHA I K G E+D+F+ NSLI MYG
Sbjct: 129 PDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYG----------- 177
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
KCGE+ + VFE M ER+V SWSALI + G + + L
Sbjct: 178 --------------------KCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCL 217
Query: 181 VIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
+ +M + G +A E LVSVL AC HLGALD GR + +++ L + ++TSLI+M
Sbjct: 218 RLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEM 277
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y KCG++ + + +F + K + L ++ MI GLAMHG+ +E L +FTEM G+ PD+I
Sbjct: 278 YLKCGSLYKGMCLFQKMAK--KNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDI 335
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
++G+L+AC+H GLV E F + + G+ P +HY CMVD + RAG++ EA E I
Sbjct: 336 VYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKS 395
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP+EP + SLL+ H L EI K+L +L YV LSN+YA +RW++
Sbjct: 396 MPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDV 455
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
TR M ++G+ + PG+S VE
Sbjct: 456 AKTRTNMFSKGLSQRPGFSLVE 477
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/419 (37%), Positives = 242/419 (57%), Gaps = 3/419 (0%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82
+ +P WN +I GY ++ + + ++ LF M + + PD + + A G
Sbjct: 182 MCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYG 241
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+H + GY D + +LI+MY +CG + AR+++DG+ +K + +ML GYAK
Sbjct: 242 RTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKL 301
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
G + AR +F+ M ER++V WSA+I GY + +EAL +F+EM S +++T++SV+
Sbjct: 302 GMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVI 361
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
AC+H+GAL Q + Y+ G L + +LIDMYAKCG + +A VF + + +
Sbjct: 362 SACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPR--KN 419
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
V+ W++MI AMHG +++LF M+ V I P+ +TF+G+L AC H GLV E F
Sbjct: 420 VISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFS 479
Query: 323 SL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
S+ + G+ P EHY CMVD RA + +A E I MP P + GSL++ C HG+
Sbjct: 480 SMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEA 539
Query: 382 DLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+L E K+L+EL+PDHDG V LSN+YA KRW++ R++M +G+ K S +E
Sbjct: 540 ELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIE 598
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 120/413 (29%), Positives = 192/413 (46%), Gaps = 64/413 (15%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA--GVSPDHLTYPFLAKASGRL 76
V S + NP + N ++R S+S P K+I L+ LRA + D ++P L KA ++
Sbjct: 76 VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLY-HNLRAINAFALDRFSFPSLLKAVSKV 134
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
+ + +H +K G+ D FI LI MY SC I+ AR +FD M +V+WN ++
Sbjct: 135 SAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMII 194
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
DGY + G Y +AL +FE+MR K + V
Sbjct: 195 DGYCQNGH-------------------------------YDDALRLFEDMRSSDMKPDSV 223
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
L +VL AC H G L GR + ++ D G ++ LQT+LI+MYA CGA+ A ++ G+
Sbjct: 224 ILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGL 283
Query: 257 -EKH----------------------------QSDVLIWNAMIGGLAMHGFVKESLELFT 287
KH + D++ W+AMI G A +E+L+LF
Sbjct: 284 SSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFD 343
Query: 288 EMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347
EM PD+IT L ++SAC+H G + +A + + + G ++D ++ G
Sbjct: 344 EMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCG 403
Query: 348 QVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400
+ +A E MP + S S++ HG D A + +++ E+ + +G
Sbjct: 404 NLVKAREVFENMPRKNVIS-WSSMINAFAMHGNADSAIKLFRRMKEVNIEPNG 455
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 48/207 (23%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN+ + +V ++ + W+++I ++ N + +I LF +M + P+ +T+ +
Sbjct: 403 GNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVL 462
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G HA + + G LF +S+I+ +G I RE
Sbjct: 463 YACG-----------HAGLVEEG--EKLF--SSMINEHG----ISPTRE----------- 492
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMP-ERNVVSWSAL-----IDGYVKCG---------- 174
+ M+D Y + + A ++ E MP NV+ W +L + G + G
Sbjct: 493 HYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLEL 552
Query: 175 --DYKEALVIFEEMRDVGSKANEVTLV 199
D+ ALV+ + + N+V L+
Sbjct: 553 EPDHDGALVVLSNIYAKEKRWNDVGLI 579
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/438 (36%), Positives = 264/438 (60%), Gaps = 5/438 (1%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG--VSPDH 63
ALS +DY+ ++L P +F N++IR + KS P KS + ++L +G + PD+
Sbjct: 57 ALSDHTYLDYANQILDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDN 116
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T FL +A L RE + VH + G+++D + LI +Y G + +VF+
Sbjct: 117 YTVNFLVQACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNS 176
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+ V +M+ A+CG++ AR++FE MPE++ ++W+A+I GY + G+ +EAL +F
Sbjct: 177 VSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLF 236
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
M+ G K N V+++SVL AC LGALDQGR Y+ + +T+ L T+L+D+YAKC
Sbjct: 237 HLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKC 296
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G + +A+ VF G+E + +V W++ + GLAM+GF ++ L+LF+ M+ G+TP+ +TF+
Sbjct: 297 GDMDKAMEVFWGME--EKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVS 354
Query: 304 LLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+L C+ G V E F S+ G+ P+ +HY C+VD +RAG++ +A I QMP++
Sbjct: 355 VLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMK 414
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
A++ SLL + L+L + KK++EL+ + G YV LSN+YA WD R
Sbjct: 415 AHAAVWSSLLHASRMYKNLELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDNVSHVR 474
Query: 423 EAMETRGVKKYPGWSFVE 440
++M+++GV+K PG S +E
Sbjct: 475 QSMKSKGVRKQPGCSVME 492
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 119/399 (29%), Positives = 217/399 (54%), Gaps = 38/399 (9%)
Query: 46 KSISLFVKMLRA--GVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNS 103
K + +M+R+ G P+ +T+ + A +E V +H + K+G ++ + N+
Sbjct: 618 KCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNA 677
Query: 104 LIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSW 163
L+++YG GD++ + C ++FE + +N+VSW
Sbjct: 678 LMNLYGKTGDLI------------------------SSC-------KLFEDLSVKNLVSW 706
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
+ +I +++ G +E L F R VG K ++ T ++VL C +G + + + ++
Sbjct: 707 NTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMF 766
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
G + + T+L+D+YAK G ++++ VF +E D + W AM+ A HG+ ++++
Sbjct: 767 CGFNANTCITTALLDLYAKLGRLEDSSTVF--LEITSPDSMAWTAMLAAYATHGYGRDAI 824
Query: 284 ELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDA 342
+ F M G++PD +TF LL+AC+H GLV E Y+F+++ KR + P+ +HY+CMVD
Sbjct: 825 KHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDL 884
Query: 343 LSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR- 401
+ R+G + +AY I +MP+EP++ + G+LL C + L K+L EL+P DGR
Sbjct: 885 MGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEP-RDGRN 943
Query: 402 YVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
Y+ LSN+Y+ W +A R M+ +G+ + G+S++E
Sbjct: 944 YIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIE 982
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 125/273 (45%), Gaps = 33/273 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A + G++ ++ K+ + WN +I GY++ ++++LF M GV + +
Sbjct: 190 TACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGV 249
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
+ + A +L + H+ I + + + + +L+ +Y CGD+ A EVF GM
Sbjct: 250 SMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGM 309
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
K +W+S L+G A MN G ++ L +F
Sbjct: 310 EEKNVYTWSSALNGLA----MN---------------------------GFGEKCLKLFS 338
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKC 243
M+ G N VT VSVL C+ +G +D+G+ M ++ G+ L L+D+YA+
Sbjct: 339 LMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARA 398
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
G +++A+ + + ++ +W++++ M+
Sbjct: 399 GRLEDAVSIIQQMPM-KAHAAVWSSLLHASRMY 430
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 112/267 (41%), Gaps = 41/267 (15%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ SCK+ LS + WNT+I + ++ + ++ F G+ PD T+ +
Sbjct: 686 GDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVL 745
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ + L+ +H I G+ ++ I+ +L+ +Y G + + VF + + S+
Sbjct: 746 RVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSM 805
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W +ML YA G A + FELM G
Sbjct: 806 AWTAMLAAYATHGYGRDAIKHFELMVH-------------------------------YG 834
Query: 191 SKANEVTLVSVLCACAHLGALDQGR-----MMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
+ VT +L AC+H G +++GR M RY I+ L + ++D+ + G
Sbjct: 835 LSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEP----RLDHYSCMVDLMGRSGL 890
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGG 272
+++A + + S +W A++G
Sbjct: 891 LQDAYGLIKEMPMEPSSG-VWGALLGA 916
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 7/187 (3%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG ++ S V +++P W ++ Y+ +I F M+ G+SPDH+T+ L
Sbjct: 786 LGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHL 845
Query: 70 AKASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A E ++K E L + ++ + G G + A + MP +
Sbjct: 846 LNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEP 905
Query: 129 SVS-WNSMLDGYAKCGEMNM----ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
S W ++L + + A+++FEL P R+ ++ L + Y G +K+A I
Sbjct: 906 SSGVWGALLGACRVYKDTQLGTKAAKRLFELEP-RDGRNYIMLSNIYSASGLWKDASRIR 964
Query: 184 EEMRDVG 190
M+ G
Sbjct: 965 NLMKQKG 971
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 277 GFVKESLELFTEM--QIVGITPDEITFLGLLSACAHGG 312
G++ + E+ + M VG P+E+TFL ++SAC HGG
Sbjct: 614 GYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGG 651
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 183/487 (37%), Positives = 268/487 (55%), Gaps = 51/487 (10%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++SF +LS LG++ Y+ + + F NT+IR Y+KS P K+I L+ M R +
Sbjct: 150 IISFLSLSPLGSLVYAQAIFEDTAMDNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIK 209
Query: 61 PDHLTYPFLAKASGR--------LAKRELAVA-----VHAQIAKTGYESDLFISNSLIHM 107
DH TYPF KA R + +L +A +H ++ + G + D FI NSL+++
Sbjct: 210 SDHFTYPFGLKACARVLWCNEGDIKCTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYL 269
Query: 108 YGSCGDIVYAREVFD-------------------------------GMPTKMSVSWNSML 136
Y CG + AR VFD MP K VSWN ++
Sbjct: 270 YSQCGFLDLARCVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGSMPGKNVVSWNMLI 329
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
Y + G++ A+ VF+ MPER+ VSW+++I GYV+ DY AL +F EM +A ++
Sbjct: 330 ARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKDYARALALFREMEIANVEATDI 389
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
TL+SVL ACA GAL+ GR + + + + L +L+DMYAKCG + A VF +
Sbjct: 390 TLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVFSEL 449
Query: 257 E-KHQSDVLIWNAMIGGLAMHGFVKESLELFT--EMQIVGITPDEITFLGLLSACAHGGL 313
+ KH S WNAMI LA+HG+ +E+L LF+ EM + G P+ +TF+G+L AC+H GL
Sbjct: 450 KMKHIS---CWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIGVLIACSHKGL 506
Query: 314 VMEAWYFF-KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
V E FF + + + ++P +HY CMVD LSR G + EA+ I MP E + + +LL
Sbjct: 507 VDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFEANSVLWRTLL 566
Query: 373 TGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432
C H +DLAE ++L +++P DG YV LSN+YA +RW++ R M GV K
Sbjct: 567 GACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYAEAQRWNDVERVRSEMIGSGVPK 626
Query: 433 YPGWSFV 439
PG S +
Sbjct: 627 KPGSSHI 633
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 173/436 (39%), Positives = 259/436 (59%), Gaps = 8/436 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LGN + KV + + +P + +N +I GY+K +++ L+ KM+ G+ PD T L
Sbjct: 179 LGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSL 238
Query: 70 AKASGRLAKRELAVAVHAQIAKTG--YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
G L+ L VH I + G Y S+L +SN+L+ MY C + A+ FD M K
Sbjct: 239 LVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKK 298
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG-DYKEALVIFEEM 186
SWN+M+ G+ + G+M A+ VF+ MP+R++VSW++L+ GY K G D + +F EM
Sbjct: 299 DMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEM 358
Query: 187 RDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
V K + VT+VS++ A+ G L GR + +I L L ++LIDMY KCG
Sbjct: 359 TIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGI 418
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
I+ A +VF + DV +W +MI GLA HG +++L+LF MQ G+TP+ +T L +L
Sbjct: 419 IERAFMVFKTAT--EKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVL 476
Query: 306 SACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ-MPLEP 363
+AC+H GLV E + F + K G P++EHY +VD L RAG+V EA + + + MP+ P
Sbjct: 477 TACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRP 536
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ SM GS+L+ C ++ AE+ +L++L+P+ +G YV LSN+YA RW + TRE
Sbjct: 537 SQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTRE 596
Query: 424 AMETRGVKKYPGWSFV 439
AME RGVKK G+S V
Sbjct: 597 AMENRGVKKTAGYSSV 612
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 109/416 (26%), Positives = 190/416 (45%), Gaps = 74/416 (17%)
Query: 1 MLSFSALSYLGNIDYS-CKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
++ FSA++Y N+D + L+ NP +F +NT+I S SKN + L+ M+R V
Sbjct: 72 LIFFSAITYPENLDLAKLLFLNFTPNPNVFVYNTMISAVSSSKN--ECFGLYSSMIRHRV 129
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
SPD T+ +L KAS L++ + +H I +G L + N L
Sbjct: 130 SPDRQTFLYLMKASSFLSEVK---QIHCHIIVSGC---LSLGNYL--------------- 168
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
WNS++ Y + G +A +VF MP +V S++ +I GY K G EA
Sbjct: 169 ------------WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEA 216
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG--LSLTLPLQTSLI 237
L ++ +M G + +E T++S+L C HL + G+ + ++ +G S L L +L+
Sbjct: 217 LKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALL 276
Query: 238 DMYAKC-------------------------------GAIKEALIVFHGVEKHQSDVLIW 266
DMY KC G ++ A VF + K D++ W
Sbjct: 277 DMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKR--DLVSW 334
Query: 267 NAMIGGLAMHGFVKESL-ELFTEMQIV-GITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
N+++ G + G + ++ ELF EM IV + PD +T + L+S A+ G + + +
Sbjct: 335 NSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLV 394
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
+ + + + ++D + G + A+ + + E ++ S++TG HG
Sbjct: 395 IRLQLKGDAFLSSALIDMYCKCGIIERAF-MVFKTATEKDVALWTSMITGLAFHGN 449
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 156/389 (40%), Positives = 239/389 (61%), Gaps = 3/389 (0%)
Query: 54 MLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113
ML G P+ LT+ FL A +H K+G++ D++ +L+ MY G
Sbjct: 1 MLLKGCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGV 60
Query: 114 IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKC 173
++ AR+VFD M + +WNS++ GY++ G+M A ++F+LMP R+VVSW+ +I GY +
Sbjct: 61 LMLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQN 120
Query: 174 GDYKEALVIFEEM-RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPL 232
G Y +AL +F +M +D + NEVT+ SV ACA LGAL+ G + Y D GL L +
Sbjct: 121 GMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYV 180
Query: 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292
+L++MYA+CG I A VF+ + K + ++ WN+M+ GLA+HG E+L+L+ +M
Sbjct: 181 SNTLLEMYARCGKIDAARHVFNEIGKRR-NLCSWNSMMMGLAVHGRSNEALQLYDQMLGE 239
Query: 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTE 351
GI PD++TF+GL+ AC HGGLV + W F+S+ +VPK EHY CMVD L RAG++ E
Sbjct: 240 GIEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQE 299
Query: 352 AYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI 411
AY+ + MP++P + + G+LL C H ++ AEI + L +++P + G YV L N+YA
Sbjct: 300 AYDLVKSMPMKPDSVIWGTLLGACSFHSNVEFAEIAAESLFQVEPWNPGNYVILCNIYAS 359
Query: 412 FKRWDEARTTREAMETRGVKKYPGWSFVE 440
+RWD R+ M+ + K G+S +E
Sbjct: 360 AQRWDGVAKLRKLMKGGQITKAAGYSVIE 388
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 131/274 (47%), Gaps = 37/274 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFL 69
G+++ + ++ + + + W T+I GYS++ K++ +F+KM + V P+ +T +
Sbjct: 90 GDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALEMFLKMEKDKEVRPNEVTIASV 149
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A +L E+ + + G +L++SN+L+ MY CG I AR VF+ + + +
Sbjct: 150 FSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMYARCGKIDAARHVFNEIGKRRN 209
Query: 130 V-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
+ SWNSM+ G A G N EAL ++++M
Sbjct: 210 LCSWNSMMMGLAVHGRSN-------------------------------EALQLYDQMLG 238
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ--TSLIDMYAKCGAI 246
G + ++VT V ++ AC H G + +G + + M + S+ L+ ++D+ + G +
Sbjct: 239 EGIEPDDVTFVGLILACTHGGLVAKGWQLFQSM-ETNFSIVPKLEHYGCMVDLLGRAGEL 297
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+EA + + + D +IW ++G + H V+
Sbjct: 298 QEAYDLVKSM-PMKPDSVIWGTLLGACSFHSNVE 330
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/470 (35%), Positives = 266/470 (56%), Gaps = 36/470 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDH 63
SA L ++ Y + + NP +F +N +I+G+ P +++ +V ML + V P
Sbjct: 79 SASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTS 138
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T+ L KA + EL VH I K G+ES LF+ +L+ Y + AR+VFD
Sbjct: 139 YTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDE 198
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD-------- 175
M + + +W +ML A+ G+M+ AR++FE MPERN +W+ +IDGY + G+
Sbjct: 199 MCERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLF 258
Query: 176 -----------------------YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD 212
Y++AL I+ EMR G +EVT+ +V ACAH+GAL+
Sbjct: 259 NQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALE 318
Query: 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
G+ + Y++ +GL+L + + ++L+DMYAKCG++ +L++F + ++ WNA+I G
Sbjct: 319 LGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLT--DKNLYCWNAVIEG 376
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVP 331
LA+HG+ +++L +F M+ I P+ +TF+ +LSAC H GLV E F S+ + + P
Sbjct: 377 LAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRP 436
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL 391
HY CMVD LS++G + EA E I M EP + + G+LL GC HG ++AE ++L
Sbjct: 437 DIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQL 496
Query: 392 VELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV-KKYPGWSFVE 440
+ L+P + G Y L ++YA K W E R M+ +GV KKYPG S++E
Sbjct: 497 MILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIE 546
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 111/266 (41%), Gaps = 50/266 (18%)
Query: 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
A + KT D F+ + I + + Y F M +N+M+ G+ CG
Sbjct: 60 ASMIKTNAIQDCFLVHQFISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPF 119
Query: 147 MARQVF-ELMPERNVVSWS---------------------------------------AL 166
A Q + ++ E NV+ S AL
Sbjct: 120 RALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTAL 179
Query: 167 IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL 226
+D Y K EA +F+EM + + ++L A A +G +D R + M ++
Sbjct: 180 VDFYSKLEILSEARKVFDEM----CERDAFAWTAMLSALARVGDMDSARKLFEEMPERNT 235
Query: 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELF 286
+ ++ID Y + G ++ A ++F+ + D++ W MI + + +++L ++
Sbjct: 236 A----TWNTMIDGYTRLGNVESAELLFNQMPT--KDIISWTTMITCYSQNKQYQDALAIY 289
Query: 287 TEMQIVGITPDEITFLGLLSACAHGG 312
+EM++ GI PDE+T + SACAH G
Sbjct: 290 SEMRLNGIIPDEVTMSTVASACAHIG 315
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 178/502 (35%), Positives = 260/502 (51%), Gaps = 67/502 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYS-KSKNPNKSISLFVKMLRAGVSPDH 63
+A S ++ + V +H+ +P + +N++IR ++ + +P+ + F +M + G+ PD+
Sbjct: 61 AAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDN 120
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG----------- 112
TYPFL KA + L +HA + K G+ D+F+ NSLI Y CG
Sbjct: 121 FTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLF 180
Query: 113 ------DIVY----------------AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
D+V A ++FD MP + VSWN+MLDGYAK GEM+ A +
Sbjct: 181 LAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFE 240
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFE-------------------------- 184
+FE MP+RN+VSWS ++ GY K GD A V+F+
Sbjct: 241 LFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREA 300
Query: 185 -----EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
+M + G + ++ L+S+L ACA G L G+ + M + + IDM
Sbjct: 301 TELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDM 360
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
YAKCG + A VF G+ + DV+ WN+MI G AMHG +++LELF+ M G PD
Sbjct: 361 YAKCGCLDAAFDVFSGMMA-KKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTY 419
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
TF+GLL AC H GLV E +F S+ K G+VP+ EHY CM+D L R G + EA+ +
Sbjct: 420 TFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRS 479
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP+EP A +LG+LL C H +D A V ++L +++P G Y LSN+YA W
Sbjct: 480 MPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNV 539
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R M G +K G S +E
Sbjct: 540 ANVRLQMMNTGGQKPSGASSIE 561
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 174/445 (39%), Positives = 253/445 (56%), Gaps = 38/445 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+ +F+ALS G++ Y+ +L+ LS F+ NT+IR YS++ +P +++ LF+ ML S
Sbjct: 32 LFTFAALSPAGDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTS 91
Query: 61 P--DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
P D TYPFL K+ RL + + +H I K+G ESD ++SN LIHMY SC
Sbjct: 92 PRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSC------- 144
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
G+ A +VF M +R+VVSW+++IDG+V E
Sbjct: 145 ------------------------GKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALE 180
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
A+ +FEEM + G + NE T+VSVL ACA GA+ GR + + ++ + L ++T+LID
Sbjct: 181 AIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALID 240
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MYAKCG+I A VF G+ DV W AMI GLA HG +E++ LF +M+ G+ PDE
Sbjct: 241 MYAKCGSIGSARKVFDGIV--NKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDE 298
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
T +LSAC + G E + +F S+ K G+ P +HY CMVD L+R G + EA EFI
Sbjct: 299 RTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIR 358
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKK--LVELQPDHDGRYVGLSNVYAIFKRW 415
+MP+EP + +L+ HG +D +E + K L+++ D G YV L NVYA +W
Sbjct: 359 KMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKW 418
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
+ RE M +G+ K PG S +E
Sbjct: 419 HDKAKMRELMNQKGLSKPPGCSRIE 443
>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Brachypodium distachyon]
Length = 635
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 166/399 (41%), Positives = 240/399 (60%), Gaps = 12/399 (3%)
Query: 44 PNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNS 103
P +++ F +L A +S +HL A+ A L VHA K G DL++ N+
Sbjct: 119 PRRNLHSFTFLL-ASIS-NHL------DATDHRASSFLGSHVHALAVKAGAAGDLYVRNA 170
Query: 104 LIHMYGSCGDIVYAREVFDGMP-TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVS 162
L H YG CGD+ R VFD +P + V+WN++L GY + G + AR+VFE MP R+ VS
Sbjct: 171 LTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVS 230
Query: 163 WSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI 222
WS L+ GYVK G+ AL +F +M + G + NE +V+ L A A +G L+ GR + +
Sbjct: 231 WSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHEVVQ 290
Query: 223 DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKES 282
G+ +++ + +L+DM++KCG + A VF G+ + DV WNAMI GLA HG +++
Sbjct: 291 RTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPR--RDVFAWNAMICGLASHGLGQDA 348
Query: 283 LELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVD 341
+ELF G+ P +ITF+G+L+AC+ GLV E +FK + K + P+ EHY CMVD
Sbjct: 349 VELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVD 408
Query: 342 ALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR 401
L RAG V+EA E I M + P + G++L+ C H +DL VG KL+EL+P HDG
Sbjct: 409 LLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIELEPAHDGH 468
Query: 402 YVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
YV L+++YA K+WDE R R+ M +RG K GWS +E
Sbjct: 469 YVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLME 507
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 108/250 (43%), Gaps = 33/250 (13%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W+T++ GY K + ++ +F M+ GV + A+ ++ E VH +
Sbjct: 231 WSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHEVVQ 290
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+TG + + +L+ M+ CG + AREVFDGMP + +WN+M+ G A G A +
Sbjct: 291 RTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDAVE 350
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F W L D G ++T V VL AC+ G
Sbjct: 351 LF----------WRFL---------------------DEGLWPTDITFVGVLNACSRCGL 379
Query: 211 LDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
+ +GR + M+DK + + ++D+ + G + EA+ + G+ D ++W +
Sbjct: 380 VAEGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHI-APDPVLWGTV 438
Query: 270 IGGLAMHGFV 279
+ H V
Sbjct: 439 LSACKTHNLV 448
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 168/501 (33%), Positives = 258/501 (51%), Gaps = 67/501 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
SA S ++ + V + + +P + +NT+IR + ++ K+ + F M + G+ D+
Sbjct: 63 SAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNF 122
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG------------ 112
TYPFL KA +H + K G+ DLF+ NSLI Y CG
Sbjct: 123 TYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFM 182
Query: 113 ---------------------DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQV 151
D+ AR++FD M + +VSWN++LDGY K GEM+ A +
Sbjct: 183 EMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNL 242
Query: 152 FELMPERNVVSWSALIDGYVKCGDY-------------------------------KEAL 180
FE MPERNVVSWS ++ GY K GD KEA
Sbjct: 243 FEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEAT 302
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
++ +M G K ++ TL+S+L ACA G L G+ + + + ++ + +L+DMY
Sbjct: 303 TLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMY 362
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG + +AL +F+ E D++ WN M+ GLAMHG +++++LF++MQ G PD++T
Sbjct: 363 AKCGRVDKALSIFN--EMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVT 420
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
+ +L AC H G V + +F S+ + G+VP EHY CM+D L R G++ EA+ + M
Sbjct: 421 LIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSM 480
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P+EP + G+LL C H + LAE V +L+ L+ G Y LSN++A W+
Sbjct: 481 PMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSVA 540
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R M++ GV+K G S +E
Sbjct: 541 NMRLQMKSTGVQKPSGASSIE 561
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 125/280 (44%), Gaps = 43/280 (15%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VHAQI K +DL+++ LI ++ C +
Sbjct: 42 VHAQIIKRNLHNDLYVAPKLI-------------------------------SAFSLCHQ 70
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
MN+A VF + + NV ++ LI +V+ +A F +M+ G A+ T +L A
Sbjct: 71 MNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKA 130
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG--AIKEALIVFHGVEKHQSD 262
C G L +M+ ++ G L + SLID Y+KCG + A+ +F +E + D
Sbjct: 131 CNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLF--MEMGEKD 188
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
++ WN+MIGGL G + + +LF EM D +++ +L G + +A+ F+
Sbjct: 189 LVSWNSMIGGLVKAGDLGRARKLFDEMA----ERDAVSWNTILDGYVKAGEMSQAFNLFE 244
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+ +R +V ++ MV + G + A +MP +
Sbjct: 245 KMPERNVVS----WSTMVSGYCKTGDMEMARMLFDKMPFK 280
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 167/444 (37%), Positives = 255/444 (57%), Gaps = 40/444 (9%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNK-SISLFVKMLRAGVSPD 62
F+A+ Y ++ + + + F +NT+IR ++++ + ++ + M R VSP+
Sbjct: 167 FNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPN 226
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSC-----GDIVYA 117
T+PF+ KA + + EL AVHA + K G+E D + N+L+HMY C V A
Sbjct: 227 KFTFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSA 286
Query: 118 REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
++VFD P K SV+W++M+ GYA+ G N AR
Sbjct: 287 KKVFDESPVKDSVTWSAMIGGYARAG--NSAR---------------------------- 316
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
A+ +F EM+ G +E+T+VSVL ACA LGAL+ G+ + Y+ K + ++ L +LI
Sbjct: 317 -AVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALI 375
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
DM+AKCG + A+ VF E ++ W +MI GLAMHG E++ +F EM G+ PD
Sbjct: 376 DMFAKCGDVDRAVKVFR--EMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPD 433
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFI 356
++ F+G+LSAC+H GLV + Y+F ++ +VPK EHY CMVD LSRAG+V EA EF+
Sbjct: 434 DVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFV 493
Query: 357 CQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWD 416
MP+EP + S++T C G+L L E V K+L+ +P H+ YV LSN+YA RW+
Sbjct: 494 RAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWE 553
Query: 417 EARTTREAMETRGVKKYPGWSFVE 440
+ RE M+ +G++K PG + +E
Sbjct: 554 KKTKVREMMDVKGMRKIPGSTMIE 577
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 249/431 (57%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
ID + ++ ++ + W T++ GY + +S+ LF +M V PD + +
Sbjct: 316 NKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVL 375
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L +L +VHA I G D F+ N+L+ +Y CG + A F+ +P K +
Sbjct: 376 SACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAA 435
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNSMLDG+ + G ++ AR F +PE+++VSW+ +++ YVK + E+ IF +M+
Sbjct: 436 SWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSN 495
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K ++ TL+S+L +CA +GAL+ G + Y+ + + L T+LIDMY KCG ++ A
Sbjct: 496 VKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAY 555
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F + + +V +W AM+ AM G E+++L+ EM+ G+ PD +TF+ LL+AC+H
Sbjct: 556 EIFTQII--EKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSH 613
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GGLV E + +F L ++P HY CMVD L R G + E +FI +MP+EP S+
Sbjct: 614 GGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWS 673
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SL+ C +H ++LAE K+L+E+ P ++G +V LSN+YA RWD+ R + G
Sbjct: 674 SLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETG 733
Query: 430 VKKYPGWSFVE 440
V K PG++ +E
Sbjct: 734 VPKQPGFTMIE 744
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 182/383 (47%), Gaps = 31/383 (8%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G + C++ +++ + WNT+I Y +++ LF +ML +GV PD +T
Sbjct: 179 SKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMV 238
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
L +L E+ +H I + N L+ MY CG + A +
Sbjct: 239 SLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDES 298
Query: 128 M--SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
V W +++ GY K +++ ARQ+F+ M ER++VSW+ ++ GYV+ G Y E+L +F++
Sbjct: 299 EVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQ 358
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
MR +EV LV+VL AC HL D GR + +++ G+ + L +L+D+YAKCG
Sbjct: 359 MRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGK 418
Query: 246 IKEALIVFH---------------------GVEKH--------QSDVLIWNAMIGGLAMH 276
+ EAL F GV+K + D++ WN M+ H
Sbjct: 419 LDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKH 478
Query: 277 GFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHY 336
ES E+F +MQ + PD+ T + LLS+CA G + + + K + +
Sbjct: 479 DLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLG 538
Query: 337 ACMVDALSRAGQVTEAYEFICQM 359
++D + G V AYE Q+
Sbjct: 539 TALIDMYGKCGCVEMAYEIFTQI 561
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/458 (26%), Positives = 209/458 (45%), Gaps = 76/458 (16%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+ N+D + ++LS+ P WNT++ K P + + + M+ GV D T+ FL
Sbjct: 80 VNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFL 139
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A + +L VH +I K G+ + ++N+L+ +Y
Sbjct: 140 IHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLY--------------------- 178
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+KCG++ Q+FE M R+V+SW+ +I YV G Y+EAL +F+EM
Sbjct: 179 ----------SKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVS 228
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G +E+T+VS++ CA L L+ G+ + Y++D L + L L+DMY+KCG + EA
Sbjct: 229 GVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEA 288
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLA--------------------------MHGFVK--- 280
+ ++ + DV++W ++ G M G+V+
Sbjct: 289 HGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGY 348
Query: 281 --ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG----KRGMVPKSE 334
ESLELF +M+ + PDE+ + +LSAC H +E + +S+ GM+
Sbjct: 349 YCESLELFQQMRFENVIPDEVALVTVLSACVH----LEDFDLGRSVHAFIVTYGMLVDGF 404
Query: 335 HYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVEL 394
++D ++ G++ EA Q+P + AS S+L G G +D A K+
Sbjct: 405 LGNALLDLYAKCGKLDEALRTFEQLPCKSAASW-NSMLDGFCRSGGVDKARDFFNKI--- 460
Query: 395 QPDHD-GRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
P+ D + + N Y ++E+ M++ VK
Sbjct: 461 -PEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVK 497
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 159/425 (37%), Positives = 259/425 (60%), Gaps = 6/425 (1%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V ++ P +N +I GY+K + +++ +M+ G+ PD T L GRL
Sbjct: 183 QVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLG 242
Query: 78 KRELAVAVHAQIAKTGY--ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSM 135
+L +VHA I + G S+L ++N+L+ MY C ++ A+ +F+ + K ++SWN+M
Sbjct: 243 DAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTM 302
Query: 136 LDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE 195
+ GYAK G + +A FE MP R++VSW+++I GY + GD +FE M +
Sbjct: 303 IAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDF 362
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
VT+++++ A A +GAL GR + +++ + + L ++ IDMY KCG+IK A +VF
Sbjct: 363 VTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFRE 422
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
V + DV +W MI G A HG+ ++L+LF EMQ + P+++TF+ +L+AC+H G V
Sbjct: 423 VT--EKDVTVWTTMITGFAFHGYGSKALQLFYEMQEY-VMPNQVTFVAVLTACSHSGFVS 479
Query: 316 EAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
+ F S+ +R G+ P EHY C+VD L R+G+ +E + I MP++P+ S+ G++L+
Sbjct: 480 QGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSA 539
Query: 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
C +G +++AEI GK+L++L+P+ +G YV LSN+YA RW + RE ME+RGVKK
Sbjct: 540 CRAYGNIEIAEIAGKELLKLEPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTA 599
Query: 435 GWSFV 439
G S V
Sbjct: 600 GCSSV 604
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 99/411 (24%), Positives = 181/411 (44%), Gaps = 69/411 (16%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLS-NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
++ FSA+++ N+D + + H + +P ++ +NT+I S S N +S + + +L + +
Sbjct: 69 LILFSAITHPENLDMAVLLFRHHTPHPNLYIYNTMISALSLSLN--QSFAFYNSLLSSCI 126
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T+ FL +AS L++ + + HA I + Y YG Y +
Sbjct: 127 YPNRSTFLFLLQASKFLSQ-VMQIHCHAIITGSFY-------------YG------YLQ- 165
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
N+++ Y + +M +A QVF+ M + VS++ +I GY K G EA
Sbjct: 166 -------------NTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEA 212
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL--SLTLPLQTSLI 237
L EM +G K +E T++ +L C LG G+ + ++ +GL S L L +L+
Sbjct: 213 LKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALL 272
Query: 238 DMYAKCGAIKEALIVFHGVEKHQS-----------------------------DVLIWNA 268
DMY KC ++ A +F+ + + + D++ WN+
Sbjct: 273 DMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNS 332
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328
+I G A G LF M I PD +T + L+SA A G + + + +
Sbjct: 333 IIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQ 392
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
M + + +D + G + A + + E ++ +++TG HG
Sbjct: 393 MKIDAFLGSAFIDMYWKCGSIKRAC-MVFREVTEKDVTVWTTMITGFAFHG 442
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 111/272 (40%), Gaps = 34/272 (12%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+GN++ + + + WN++I GY++ + LF M+ + PD +T L
Sbjct: 309 VGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINL 368
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A+ + +H + + + D F+ ++ I MY CG I A VF + K
Sbjct: 369 VSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDV 428
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
W +M+ G+A G + A Q+F M E YV
Sbjct: 429 TVWTTMITGFAFHGYGSKALQLFYEMQE------------YV------------------ 458
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKE 248
N+VT V+VL AC+H G + QG + M ++ G+ + L+D+ + G E
Sbjct: 459 --MPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSE 516
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
V + S IW A++ +G ++
Sbjct: 517 VKDVIEMMPMKPSRS-IWGAVLSACRAYGNIE 547
>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
Length = 554
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 175/439 (39%), Positives = 254/439 (57%), Gaps = 20/439 (4%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL-AKASGRLA 77
V + +P WN +IR +++S+ P KSI F +ML PD TY FL A + L+
Sbjct: 82 VFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAACTSSLS 141
Query: 78 KRELAVAVHAQIAKTGY-ESDLFISNSLIHMY-----GSCGDIVYAREVFDGMPTKMSVS 131
RE VH+++ GY S++F+ + L++ Y G + AR+VFD M + V
Sbjct: 142 LRE-GQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASARKVFDDMSERNVVC 200
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
WNSML GY + G ++ AR++F MPERNVVSW+ +I GY K G K+AL +F++MR G
Sbjct: 201 WNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQMRKAGV 260
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMID----KGLSLTLPLQTSLIDMYAKCGAIK 247
+ ++V L++ L ACA LG L G + Y+ D + + L +LI MYA CG I
Sbjct: 261 ELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNALIHMYASCGMID 320
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT---PDEITFLGL 304
EA VF + + + + W ++I A G+ + LE+F MQ +G + PD ITF+G+
Sbjct: 321 EAYEVFRWMPERSA--VSWTSLITAFAKQGYAQAVLEIFRSMQRLGTSEARPDGITFIGV 378
Query: 305 LSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L AC+H GLV E FK + +R G+ P+ EHY CMVD LSRAG + EA E I MP++P
Sbjct: 379 LCACSHAGLVDEGRQLFKDMIQRWGIKPRIEHYGCMVDLLSRAGFLDEAQELIATMPVKP 438
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLV-ELQPDHDGRYVG-LSNVYAIFKRWDEARTT 421
++ G+LL GC + +LA +V +KLV E PD Y+ L+ VYA ++W + T
Sbjct: 439 NNAVWGALLGGCRFYRNAELASLVSQKLVAEPDPDKAAGYLSLLAQVYASAEKWQDVATV 498
Query: 422 REAMETRGVKKYPGWSFVE 440
R+ M GVKK G S+V+
Sbjct: 499 RQKMVAMGVKKPAGQSWVQ 517
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 148/318 (46%), Gaps = 47/318 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN+D + ++ + + W T+I GY+K+ ++++LF +M +AGV D +
Sbjct: 212 GNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQMRKAGVELDQVVLLAAL 271
Query: 71 KASGRLAKRELAVAVHAQIAKT--GYESDLFIS--NSLIHMYGSCGDIVYAREVFDGMPT 126
A L ++ + +H+ I T G + +S N+LIHMY SCG I A EVF MP
Sbjct: 272 TACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNALIHMYASCGMIDEAYEVFRWMPE 331
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ +VSW S++ +AK G A+ V E IF M
Sbjct: 332 RSAVSWTSLITAFAKQG---YAQAVLE----------------------------IFRSM 360
Query: 187 RDVGS---KANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAK 242
+ +G+ + + +T + VLCAC+H G +D+GR + + MI + G+ + ++D+ ++
Sbjct: 361 QRLGTSEARPDGITFIGVLCACSHAGLVDEGRQLFKDMIQRWGIKPRIEHYGCMVDLLSR 420
Query: 243 CGAIKEA--LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
G + EA LI V+ + + +W A++GG + L ++V PD
Sbjct: 421 AGFLDEAQELIATMPVKPNNA---VWGALLGGCRF--YRNAELASLVSQKLVA-EPDPDK 474
Query: 301 FLGLLSACAHGGLVMEAW 318
G LS A E W
Sbjct: 475 AAGYLSLLAQVYASAEKW 492
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 119/283 (42%), Gaps = 19/283 (6%)
Query: 110 SCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELM----PERNVVSWSA 165
S ++ A VF + + ++ WN M+ +A+ + Q F M + ++S
Sbjct: 72 SAHHLLSAHYVFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSF 131
Query: 166 LIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA--CAHLGALDQGRMMLRYMID 223
L+ +E + ++ G ++ V L+S L A +G R + D
Sbjct: 132 LLAACTSSLSLREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASARKVFD 191
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
+ S++ Y + G + A +F+ E + +V+ W MI G A +G K++L
Sbjct: 192 DMSERNVVCWNSMLAGYMRRGNLDGARRIFY--EMPERNVVSWTTMISGYAKNGKCKQAL 249
Query: 284 ELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAWYF------FKSLGKRGMVPKSEHY 336
LF +M+ G+ D++ L L+ACA G L M W F +R +V +
Sbjct: 250 NLFDQMRKAGVELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNN-- 307
Query: 337 ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
++ + G + EAYE MP E +A SL+T G
Sbjct: 308 -ALIHMYASCGMIDEAYEVFRWMP-ERSAVSWTSLITAFAKQG 348
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 177/502 (35%), Positives = 259/502 (51%), Gaps = 68/502 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
SA S + + + + P + +NT+IR +S + P+++ + F M R G D+
Sbjct: 60 SAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNF 119
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG------------ 112
T+PFL K + +VHAQI K G+ SD+F+ NSLI Y CG
Sbjct: 120 TFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFV 179
Query: 113 ------DIVY----------------AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
D+V AR+VFD MP K +SWN+MLDGY K G+M+ A +
Sbjct: 180 SMGARRDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFK 239
Query: 151 VFELMPERNVVSWSALIDGYVKCGDY-------------------------------KEA 179
+F+ MPERNVVSWS ++ GY K GD +EA
Sbjct: 240 LFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREA 299
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
+ +F++M K + T++S+L ACA G L G + + + T + +L+DM
Sbjct: 300 ISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDM 359
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
YAKCG + A VF+ ++ DV+ WNAM+ GLAMHG ++LELF M+ G +P+++
Sbjct: 360 YAKCGRLNIAYDVFNDIK--NKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKV 417
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
T +G+L AC H GL+ + +F ++ + +VP+ EHY CMVD L R G++ EA I
Sbjct: 418 TMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRN 477
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP+ P A + G+LL C H ++LA V LVEL+P G + LSN+YA W+
Sbjct: 478 MPMAPNAIIWGTLLGACRMHNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCV 537
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
TR M + G KK G S +E
Sbjct: 538 ANTRLRMRSIGTKKPSGASSIE 559
>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 511
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 255/434 (58%), Gaps = 4/434 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+ N+ Y+ K+ H N F +N +I+ Y P++SI L+ + G+ P H T+ F+
Sbjct: 29 IPNLVYARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFI 88
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
AS + +H+Q ++G+ESD F +LI Y G + AR VFD M +
Sbjct: 89 FAASASFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDV 148
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RD 188
WN+M+ GY + G+M A ++F+ MP +NV SW+ +I G+ + G+Y EAL +F M +D
Sbjct: 149 PVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKD 208
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
K N +T+VSVL ACA+LG L+ GR + Y + G + + + I+MY+KCG I
Sbjct: 209 KSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDV 268
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A +F + +Q ++ WN+MIG LA HG E+L LF +M G PD +TF+GLL AC
Sbjct: 269 AKRLFEEL-GNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLAC 327
Query: 309 AHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
HGG+V++ FKS+ + + PK EHY CM+D L R G++ EAY+ I MP++P A +
Sbjct: 328 VHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVV 387
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
G+LL C HG +++AEI + L +L+P + G V +SN+YA ++WD R+ M+
Sbjct: 388 WGTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKK 447
Query: 428 RGVKKYPGWS-FVE 440
+ K G+S FVE
Sbjct: 448 ETMTKAAGYSYFVE 461
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 160/393 (40%), Positives = 239/393 (60%), Gaps = 3/393 (0%)
Query: 51 FVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGS 110
+ +M G+ D+ T PF+ K+ L++ + VH Q + G E D ++ SLI MY
Sbjct: 95 YARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVK 154
Query: 111 CGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGY 170
CG I AR++FD M + SWN+++ GY K GE+ +A +FE M RN+VSW+A+I GY
Sbjct: 155 CGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGY 214
Query: 171 VKCGDYKEALVIFEEMRDVGS--KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL 228
+ G ++AL +F+EM GS K N VT+VSVL ACA AL++GR + + GL L
Sbjct: 215 TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHL 274
Query: 229 TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288
+QT+L MYAKC ++ EA F + ++ +++ WN MI A HG E++ +F
Sbjct: 275 NSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFEN 334
Query: 289 MQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAG 347
M G+ PD +TF+GLLS C+H GL+ F +G + P+ EHYAC+VD L RAG
Sbjct: 335 MLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAG 394
Query: 348 QVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSN 407
++ EA E I QMP++ S+ G+LL C +H L++AE+ ++L L+PD+ G YV LSN
Sbjct: 395 RLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSN 454
Query: 408 VYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+YA W+E + R ++ +G+KK PG S++E
Sbjct: 455 LYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIE 487
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 113/274 (41%), Gaps = 43/274 (15%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG--VSPDHLTYPF 68
G I + + + + I W +I GY+++ +++ LF +ML+ G + P+ +T
Sbjct: 187 GEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVS 246
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT-- 126
+ A + A E +H G + + +L MY C +V AR FD +
Sbjct: 247 VLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNG 306
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
K ++WN+M+ YA G CG EA+ IFE M
Sbjct: 307 KNLIAWNTMITAYASHG-----------------------------CG--VEAVSIFENM 335
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS----LIDMYAK 242
G + + VT + +L C+H G +D G L + D G ++ + ++D+ +
Sbjct: 336 LRAGVQPDAVTFMGLLSGCSHSGLIDAG---LNHFNDMGTIHSVEPRVEHYACVVDLLGR 392
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
G + EA + + Q+ +W A++ H
Sbjct: 393 AGRLVEAKELISQMPM-QAGPSVWGALLAACRSH 425
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WNT+I Y+ +++S+F MLRAGV PD +T+ L + + H
Sbjct: 312 WNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLN-HFNDM 370
Query: 91 KTGYESDLFISN--SLIHMYGSCGDIVYAREVFDGMPTKMSVS-WNSMLDGYAKCGEMNM 147
T + + + + ++ + G G +V A+E+ MP + S W ++L + +
Sbjct: 371 GTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEI 430
Query: 148 ----ARQVFELMPERNVVSWSALIDGYVKCGDYKE-----ALVIFEEMR 187
AR++F L P+ N ++ L + Y + G ++E AL+ ++ M+
Sbjct: 431 AELAARRLFVLEPD-NSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMK 478
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 169/447 (37%), Positives = 265/447 (59%), Gaps = 12/447 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+F A S G++ ++ K+ H+ +P I +NT+I+ +I++F + R G+
Sbjct: 43 LLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMIKALLLRGEFLNAIAVFSAIFRNGIH 102
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD T P++ KAS R+ L ++HA K G + F+ NSL+ MY S ++ AR+V
Sbjct: 103 PDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQV 162
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD MP +VSW M+ GYA G+++ AR++F++ ++ W A+I GYV+ +KE L
Sbjct: 163 FDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGL 222
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F M+ + +E +V++L ACAH+GALD G + RY+ GL LTL + T LIDMY
Sbjct: 223 HMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMY 282
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG + A +F+ E Q D + WNAMI G+AM G + +++LF EM+ GI PD IT
Sbjct: 283 AKCGHLDLAKYLFN--EMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNIT 340
Query: 301 FLGLLSACAHGGLVMEA---WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
F+ + AC++ G+V E W ++ K + PKSEHY C++D LSR G+ EA I
Sbjct: 341 FIAVWXACSNSGMVDEGIRIWNRMSTVHK--IEPKSEHYGCVIDLLSRVGRFEEAEGVIQ 398
Query: 358 QMP--LEPTASMLG--SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413
++P P+ + + L+ C HG+ AE+ ++L +L+ H G YV LSN+YA
Sbjct: 399 RLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLE-RHSGAYVLLSNMYAALG 457
Query: 414 RWDEARTTREAMETRGVKKYPGWSFVE 440
+ ++A+ R M+ +GV+K PG S ++
Sbjct: 458 KHEDAKRVRNMMKLKGVEKVPGCSSIK 484
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 114/280 (40%), Gaps = 12/280 (4%)
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSC--GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
HAQ+ K+G + F+ + L++ G + +A ++F + +N+M+ G
Sbjct: 25 HAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMIKALLLRG 84
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR----DVGSKANEVTLV 199
E A VF + + + + +K + + E + +GS NE
Sbjct: 85 EFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGN 144
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
S+L + R + D+ L+ T +I YA G + A +F
Sbjct: 145 SLLVMYRSFDNMRSARQVF----DEMPELSAVSWTVMIYGYANMGDVDTARELFDMAT-- 198
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
D IW AMI G + KE L +F MQ+ + PDE + +LSACAH G + +
Sbjct: 199 VKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIW 258
Query: 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
+ LG+ G+ ++D ++ G + A +M
Sbjct: 259 IHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEM 298
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 166/431 (38%), Positives = 248/431 (57%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN+ Y+ V + + WN++I GYS+ ++LF M GV D +T +
Sbjct: 136 GNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVV 195
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A RL +A + I E D+++ N+L+ +G G + A +VF M + V
Sbjct: 196 SACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIV 255
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+ N+M+ YAK ++ AR++F+ +P+++++SWS++I GY + + +AL IF +M+
Sbjct: 256 TMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAK 315
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K + + + SV+ +CAHLGALD G+ + Y+ + ++ SLIDMY KCG+ KEAL
Sbjct: 316 VKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEAL 375
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF E + D L WN++I GLA +GF KESL LF M G P+ +TFLG+L ACA+
Sbjct: 376 QVFK--EMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACAN 433
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
LV E F+S+ + + P+ +HY C+VD L RAGQ+ +A FI +MP++P +
Sbjct: 434 AKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWR 493
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
LL C HG + +AEIV KKL EL+P + G Y LSN YA RW EA R+ M
Sbjct: 494 ILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTD 553
Query: 430 VKKYPGWSFVE 440
V+K PG S VE
Sbjct: 554 VRKSPGCSAVE 564
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/394 (27%), Positives = 188/394 (47%), Gaps = 61/394 (15%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
++ KV + P F WN +IRG ++S P +I+ + K G+ PD+LT+PF+ KA
Sbjct: 39 FAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACA 98
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
R+ +H I K G SD+F+SNSLIH+Y +CG++ YAR VFD M K VSWNS
Sbjct: 99 RINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNS 158
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ GY++C +K+ L +F+ M++ G KA+
Sbjct: 159 LICGYSQCNR-------------------------------FKDILALFKLMQNEGVKAD 187
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
+VT++ V+ AC LG M+RY+ D + + + L +L+D + + G ++ A VF
Sbjct: 188 KVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFF 247
Query: 255 GVEKH-----------------------------QSDVLIWNAMIGGLAMHGFVKESLEL 285
++ + D++ W++MI G + ++LE+
Sbjct: 248 NMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEI 307
Query: 286 FTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSR 345
F +MQ + PD I ++S+CAH G + + + + + + + ++D +
Sbjct: 308 FRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMK 367
Query: 346 AGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
G EA + +M + T S S++ G N+G
Sbjct: 368 CGSAKEALQVFKEMKEKDTLS-WNSIIIGLANNG 400
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 2/224 (0%)
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
++ A +VF+ + W+ LI G + +A+ +++ + G + +T +L
Sbjct: 36 DLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILK 95
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
ACA + AL++G M ++ GL + + SLI +YA CG + A VF E DV
Sbjct: 96 ACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFD--EMVVKDV 153
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
+ WN++I G + K+ L LF MQ G+ D++T + ++SAC G A Y +
Sbjct: 154 VSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRY 213
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
+ + +VD R GQ+ A + M + +M
Sbjct: 214 IEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTM 257
>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 255/434 (58%), Gaps = 4/434 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+ N+ Y+ K+ H N F +N +I+ Y P++SI L+ + G+ P H T+ F+
Sbjct: 22 IPNLVYARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFI 81
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
AS + +H+Q ++G+ESD F +LI Y G + AR VFD M +
Sbjct: 82 FAASASFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDV 141
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RD 188
WN+M+ GY + G+M A ++F+ MP +NV SW+ +I G+ + G+Y EAL +F M +D
Sbjct: 142 PVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKD 201
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
K N +T+VSVL ACA+LG L+ GR + Y + G + + + I+MY+KCG I
Sbjct: 202 KSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDV 261
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A +F + +Q ++ WN+MIG LA HG E+L LF +M G PD +TF+GLL AC
Sbjct: 262 AKRLFEEL-GNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLAC 320
Query: 309 AHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
HGG+V++ FKS+ + + PK EHY CM+D L R G++ EAY+ I MP++P A +
Sbjct: 321 VHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVV 380
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
G+LL C HG +++AEI + L +L+P + G V +SN+YA ++WD R+ M+
Sbjct: 381 WGTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKK 440
Query: 428 RGVKKYPGWS-FVE 440
+ K G+S FVE
Sbjct: 441 ETMTKAAGYSYFVE 454
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 168/470 (35%), Positives = 266/470 (56%), Gaps = 36/470 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDH 63
SA L ++ Y + + NP +F +N +I+G+ P +++ +V ML + V P
Sbjct: 176 SASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTS 235
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T+ L KA + EL VH I K G+ES LF+ +L+ Y + AR+VFD
Sbjct: 236 YTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDE 295
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD-------- 175
M + + +W +M+ A+ G+M+ AR++FE MPERN +W+ +IDGY + G+
Sbjct: 296 MCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLF 355
Query: 176 -----------------------YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD 212
Y++AL I+ EMR G +EVT+ +V ACAH+GAL+
Sbjct: 356 NQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALE 415
Query: 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
G+ + Y++ +GL+L + + ++L+DMYAKCG++ +L++F + ++ WNA+I G
Sbjct: 416 LGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLT--DKNLYCWNAVIEG 473
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVP 331
LA+HG+ +++L +F M+ I P+ +TF+ +LSAC H GLV E F S+ + + P
Sbjct: 474 LAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRP 533
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL 391
HY CMVD LS++G + EA E I M EP + + G+LL GC HG ++AE ++L
Sbjct: 534 DIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQL 593
Query: 392 VELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV-KKYPGWSFVE 440
+ L+P + G Y L ++YA K W E R M+ +GV KKYPG S++E
Sbjct: 594 MILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIE 643
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 112/266 (42%), Gaps = 50/266 (18%)
Query: 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
A + KT D F+ + I + + Y F M +N+M+ G+ CG
Sbjct: 157 ASMIKTNAIQDCFLVHQFISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPF 216
Query: 147 MARQVF-ELMPERNVVSWS---------------------------------------AL 166
A Q + ++ E NV+ S AL
Sbjct: 217 RALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTAL 276
Query: 167 IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL 226
+D Y K EA +F+EM + + +++ A A +G +D R + M ++
Sbjct: 277 VDFYSKLEILSEARKVFDEM----CERDAFAWTAMVSALARVGDMDSARKLFEEMPERNT 332
Query: 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELF 286
+ ++ID YA+ G ++ A ++F+ + D++ W MI + + +++L ++
Sbjct: 333 A----TWNTMIDGYARLGNVESAELLFN--QMPTKDIISWTTMITCYSQNKQYQDALAIY 386
Query: 287 TEMQIVGITPDEITFLGLLSACAHGG 312
+EM++ GI PDE+T + SACAH G
Sbjct: 387 SEMRLNGIIPDEVTMSTVASACAHIG 412
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 154/415 (37%), Positives = 250/415 (60%), Gaps = 8/415 (1%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ WN ++ GY+++ + + LF +M+ AG+ PD T+ + A LA ++
Sbjct: 225 VVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVR 284
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT-KMSVSWNSMLDGYAKCGEMN 146
+ + + + F+ +L+ MY CG I AR +FD + + SV+WN+M+ Y + G ++
Sbjct: 285 TLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLD 344
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS-KANEVTLVSVLCAC 205
AR++F MP RNVV+W+++I GY + G A+ +F+EM +EVT+VSV+ AC
Sbjct: 345 SARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISAC 404
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
HLGAL+ G ++R++ + + L++ ++I MY++CG++++A VF E DV+
Sbjct: 405 GHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQ--EMATRDVVS 462
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
+N +I G A HG E++ L + M+ GI PD +TF+G+L+AC+H GL+ E F+S+
Sbjct: 463 YNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK 522
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
P +HYACMVD L R G++ +A + +MP+EP A + GSLL H +++L E
Sbjct: 523 D----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGE 578
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ KL EL+PD+ G ++ LSN+YA RW + REAM+ GVKK GWS+VE
Sbjct: 579 LAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVE 633
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 202/419 (48%), Gaps = 70/419 (16%)
Query: 25 NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVA 84
NP +F + +++R YS ++ K + +F M GV PD YP L K++G +
Sbjct: 62 NPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAG-----NGGIG 116
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG--------------------- 123
HA + K G+ SD F+ N++I MY G I +AR+VFD
Sbjct: 117 FHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKW 176
Query: 124 ------------MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV 171
MP + ++W +M+ GYAK ++ AR+ F+ MPER+VVSW+A++ GY
Sbjct: 177 ESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYA 236
Query: 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
+ G +E L +F+EM + G + +E T V+V+ AC+ G ++R + K + L
Sbjct: 237 QNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCF 296
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQS------------------------------ 261
++T+L+DMYAKCG+I A +F + +++
Sbjct: 297 VRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGR 356
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACAHGGLVMEAWYF 320
+V+ WN+MI G A +G ++ELF EM +TPDE+T + ++SAC H G + +
Sbjct: 357 NVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWV 416
Query: 321 FKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+ L + + + M+ SR G + +A +M S +L++G HG
Sbjct: 417 VRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVS-YNTLISGFAAHG 474
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 115/247 (46%), Gaps = 36/247 (14%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPD 62
SA + +GN+D + ++ + + + WN++I GY+++ +I LF +M+ A ++PD
Sbjct: 334 ISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPD 393
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
+T + A G L EL V + + + + N++I MY CG + A+ VF
Sbjct: 394 EVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQ 453
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
M T+ VS+N+++ G+A G EA+ +
Sbjct: 454 EMATRDVVSYNTLISGFAAHGHG-------------------------------VEAINL 482
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
M++ G + + VT + VL AC+H G L++GR + + D + ++D+ +
Sbjct: 483 MSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAID----HYACMVDLLGR 538
Query: 243 CGAIKEA 249
G +++A
Sbjct: 539 VGELEDA 545
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 181/501 (36%), Positives = 257/501 (51%), Gaps = 75/501 (14%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
++ Y+ + L+ P IF WNT++R +S S P + + ++ GV PD T+P L K
Sbjct: 53 DLGYTLLLFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLK 112
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A +L + E +A I K G + D F+ NSL+ + CG + +R +F K VS
Sbjct: 113 AFSKL-RNENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVS 171
Query: 132 WNSMLDGYAKCGEMNMARQVFELM-------PERNVVS-----------W---------- 163
W ++++G + G A + F M E VVS W
Sbjct: 172 WTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYV 231
Query: 164 ------------SALIDGYVKCG-------------------------------DYKEAL 180
SAL+D Y KCG YKEAL
Sbjct: 232 ESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEAL 291
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F+EM G + N+ T+ S L ACA LG+LDQGR + Y+ L L L T+L+DMY
Sbjct: 292 KVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMY 351
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
+KCG + EAL+VF + DV W AMI GLAM G SL LF++M + P+ +T
Sbjct: 352 SKCGCVDEALLVFEKLPA--KDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVT 409
Query: 301 FLGLLSACAHGGLVMEAWYFFK-SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
FLG+LSACAHGGLV E F+ + + P +HY CMVD L RAG++ EA +FI M
Sbjct: 410 FLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESM 469
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P+EPT + G+L +GCM H +L E +G L++LQP H GRY+ L+N+Y+ ++W+ A
Sbjct: 470 PMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAA 529
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R M+ +GV K P S++E
Sbjct: 530 NVRRLMKGKGVDKSPACSWIE 550
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 112/270 (41%), Gaps = 33/270 (12%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G D + KV + + + W +I GY + +++ +F +M+ G+ P+ T
Sbjct: 251 SKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVT 310
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
A +L + +H + ++ + + +L+ MY CG + A VF+ +P K
Sbjct: 311 SALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAK 370
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
W +M++G A GD +L +F +M
Sbjct: 371 DVYPWTAMINGLA-------------------------------MRGDALSSLNLFSQMI 399
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAI 246
+ N VT + VL ACAH G +D+G + R MI D L + ++D+ + G +
Sbjct: 400 RSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRL 459
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+EA+ + + +W A+ G +H
Sbjct: 460 EEAIKFIESMPMEPTPG-VWGALFSGCMIH 488
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 165/424 (38%), Positives = 250/424 (58%), Gaps = 5/424 (1%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V + +P I +N +I GY+K +++ LF +M+ G+ PD T L + G+L
Sbjct: 119 QVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLG 178
Query: 78 KRELAVAVHAQIA--KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSM 135
+ AVH + K S+L + N+L+ MY C + A F + K VSWN +
Sbjct: 179 NVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMI 238
Query: 136 LDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE 195
+ G AK GE+ AR F MP R++VSW++L+ GY GD+ + +M +
Sbjct: 239 VAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDT 298
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
VT++S++ A GALDQGR ++I + L L ++LIDMY KCG+I+ A VF
Sbjct: 299 VTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKE 358
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
+ K DV +W MI GLA HG+ ++LELF+EMQ ++PD++TF+ +LSAC+H GLV
Sbjct: 359 INK--KDVTVWTTMITGLAFHGYGSKALELFSEMQ-EDVSPDDVTFVSVLSACSHSGLVD 415
Query: 316 EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
+ F S+ G+ P EHY C+VD L+R+G+++EA + I QMP++P+ S+ G++L C
Sbjct: 416 QGIKVFSSMTDYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNAC 475
Query: 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPG 435
G ++LAEI ++L+ L P+ +G Y LSN+YA RW ++ RE ME+RGVKK G
Sbjct: 476 QAQGDVELAEIASRELLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAG 535
Query: 436 WSFV 439
S V
Sbjct: 536 CSSV 539
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 109/448 (24%), Positives = 191/448 (42%), Gaps = 108/448 (24%)
Query: 4 FSALSYLGNIDYSCKVLSHLS-NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD 62
FSA+S+ N+D + + +H + NP +F +NT+I +S K +S L+ +L +G PD
Sbjct: 7 FSAVSHPDNLDLAITLFNHFTPNPNLFIYNTLISAFSSLKKI-ESFYLYNVLLSSGECPD 65
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
T +L +A +++ + +H Q TG S ++ N+LI +Y
Sbjct: 66 KQTLLYLLQAVNFISQVK---QIHCQAIVTGLFSFGYLQNTLIKVY-------------- 108
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ G + +A QVFE MP ++VS++ +I GY K G EA+ +
Sbjct: 109 -----------------LENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRL 151
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK--GLSLTLPLQTSLIDMY 240
F EM +G + +E T++ +L +C LG + G+ + +M + +S L L +L+DMY
Sbjct: 152 FHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMY 211
Query: 241 AKCGAIKEALIVFHGVEKHQ-----------------------------SDVLIWNAMIG 271
KC ++ AL F +++ D++ WN+++
Sbjct: 212 VKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVT 271
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC-----------AHG--------- 311
G A G EL +M + + PD +T + L+SA AHG
Sbjct: 272 GYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKL 331
Query: 312 ---------------GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFI 356
G + A FK + K+ + + M+ L+ G ++A E
Sbjct: 332 DAFLGSALIDMYCKCGSIERASRVFKEINKKDVTV----WTTMITGLAFHGYGSKALELF 387
Query: 357 CQMP--LEPTASMLGSLLTGCMNHGKLD 382
+M + P S+L+ C + G +D
Sbjct: 388 SEMQEDVSPDDVTFVSVLSACSHSGLVD 415
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 171/451 (37%), Positives = 242/451 (53%), Gaps = 66/451 (14%)
Query: 54 MLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113
MLR V P ++ + ++ + +L A H QI K G+E D+ + L+ Y GD
Sbjct: 1 MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60
Query: 114 IVYAREVFDGMP-------------------------------TKMSVSWNSMLDGYAKC 142
+ A+ VF GMP + S SWNSM+ Y K
Sbjct: 61 LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKL 120
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGY-------------------------------- 170
G++N AR +F+ P ++VVSW+A+IDGY
Sbjct: 121 GDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAY 180
Query: 171 VKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTL 230
V+CG++ A+ +F++M+ K EVT+VS+L ACAHLGALD G + Y+ K L + +
Sbjct: 181 VQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDV 240
Query: 231 PLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ 290
L +LIDMY KCGA++ A+ VFHG+ + ++ WN++I GL M+G +E++ F M+
Sbjct: 241 VLGNALIDMYCKCGALEAAIDVFHGLSR--KNIFCWNSIIVGLGMNGRGEEAIAAFIVME 298
Query: 291 IVGITPDEITFLGLLSACAHGGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQV 349
GI PD +TF+G+LS C+H GL+ YF + LG G+ P EHY CMVD L RAG +
Sbjct: 299 KEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYL 358
Query: 350 TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409
EA E I MP++P + +LGSLL C H L E V ++L+EL P G YV LSN+Y
Sbjct: 359 KEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLY 418
Query: 410 AIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
A RWD+ T R+ M RGV K PG S +E
Sbjct: 419 ASLSRWDDVNTCRKLMIKRGVHKTPGCSSIE 449
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 97/261 (37%), Gaps = 66/261 (25%)
Query: 25 NP--RIFYWNTVIRGYSKSKNP--------------------------------NKSISL 50
NP + WN +I GY KSK +IS+
Sbjct: 133 NPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISM 192
Query: 51 FVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGS 110
F +M V P +T L A L ++ +H I + D+ + N+LI MY
Sbjct: 193 FQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCK 252
Query: 111 CGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGY 170
CG + A +VF G+ K WNS++ G MN
Sbjct: 253 CGALEAAIDVFHGLSRKNIFCWNSIIVGLG----MN------------------------ 284
Query: 171 VKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLT 229
G +EA+ F M G K + VT V +L C+H G L G+ M+ GL
Sbjct: 285 ---GRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPG 341
Query: 230 LPLQTSLIDMYAKCGAIKEAL 250
+ ++D+ + G +KEAL
Sbjct: 342 VEHYGCMVDLLGRAGYLKEAL 362
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + V LS IF WN++I G + ++I+ F+ M + G+ PD +T+ +
Sbjct: 254 GALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGIL 313
Query: 71 KA---SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
SG L+ + + + G E + ++ + G G + A E+ MP K
Sbjct: 314 SGCSHSGLLSAGQRYFS--EMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMK 371
Query: 128 MSVSWNSMLDGY----------AKCGEMNMARQVFELMP 156
NSM+ G K GE + +Q+ EL P
Sbjct: 372 P----NSMVLGSLLRACQIHKDTKLGE-QVTQQLLELDP 405
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 157/388 (40%), Positives = 238/388 (61%), Gaps = 3/388 (0%)
Query: 54 MLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113
M+ GV P+ T + KA +A E H I K G+ESD+ + +L+HMY CG
Sbjct: 1 MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60
Query: 114 IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKC 173
+ A VFD M + + +WN+M+ G+A+ +M A ++F M ER+VVSW+A+I GY +
Sbjct: 61 LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120
Query: 174 GDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
G E+L +F +MR G K++ + SVL ACA L AL+ GR Y++ G +L + +
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
++L+DMYAK G++++A VF + Q + + WN++I G A HG +++ LF +M G
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMP--QRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAG 238
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEA 352
I P+EI+F+G+LSAC+H GLV E +F + + G+VP HY CM+D L RAG + EA
Sbjct: 239 IKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEA 298
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412
FI MP+EP S+ G+LL C HG +LA+ + + L+ ++ G YV LSN+YA
Sbjct: 299 ENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAA 358
Query: 413 KRWDEARTTREAMETRGVKKYPGWSFVE 440
+WD+A R+ M+ RGV K PG+S++E
Sbjct: 359 GQWDDAAKVRKLMKDRGVMKQPGYSWIE 386
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 136/283 (48%), Gaps = 38/283 (13%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
K+ +S + W VI GY+++ ++S+++F +M + G+ D + A LA
Sbjct: 97 KLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLA 156
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
EL HA + ++G+ D+ + ++L+ MY G + A +VFD MP + VSWNS++
Sbjct: 157 ALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIIT 216
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
G A+ G N +A+++FE+M G K NE++
Sbjct: 217 GCAQHGRGN-------------------------------DAVLLFEQMLQAGIKPNEIS 245
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
V VL AC+H G +++GR M G+ + T +ID+ + G + EA +G+
Sbjct: 246 FVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGM 305
Query: 257 EKHQSDVLIWNAMIGGLAMHG---FVKESLE--LFTEMQIVGI 294
+ DV +W A++G +HG K E L E+QI GI
Sbjct: 306 PV-EPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGI 347
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 5/185 (2%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY-PFL 69
G+++ +C+V + WN++I G ++ N ++ LF +ML+AG+ P+ +++ L
Sbjct: 191 GSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVL 250
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+ S E + G D+ +I + G G + A +GMP +
Sbjct: 251 SACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPD 310
Query: 130 VS-WNSMLDGYAKCGEMNMARQVFE--LMPERNVVSWSALIDG-YVKCGDYKEALVIFEE 185
VS W ++L G +A+++ E L E + L+ Y G + +A + +
Sbjct: 311 VSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAKVRKL 370
Query: 186 MRDVG 190
M+D G
Sbjct: 371 MKDRG 375
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 157/414 (37%), Positives = 239/414 (57%), Gaps = 3/414 (0%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ W+ +I GY +S N ++ LF +M V PD + + A GR +H
Sbjct: 188 VVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHD 247
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
I + D + ++L+ MY SCG + A +F+ M K V+ +M+ GY+K G++
Sbjct: 248 FIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIEN 307
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
AR VF M ++++V WSA+I GY + +EAL +F EM+ +G K ++VT++SV+ ACAH
Sbjct: 308 ARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAH 367
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
LGALDQ + + ++ G LP+ +LI+MYAKCG+++ A +F + + +V+ W
Sbjct: 368 LGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPR--KNVISWT 425
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GK 326
MI AMHG +L F +M+ I P+ ITF+G+L AC+H GLV E F S+ +
Sbjct: 426 CMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINE 485
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
+ PK HY CMVD RA + EA E + MPL P + GSL+ C HG+++L E
Sbjct: 486 HNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEF 545
Query: 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
K+L+EL PDHDG +V LSN+YA +RW++ R+ M+ +G+ K G S E
Sbjct: 546 AAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFE 599
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 134/490 (27%), Positives = 218/490 (44%), Gaps = 102/490 (20%)
Query: 2 LSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP 61
L S+ + ++DY+ V + + P N +R S+S+ P K++ ++ +M G++
Sbjct: 61 LVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAV 120
Query: 62 DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121
D ++P L KA R+ + +H AK G++SD F+ L+ MY +CG I AR +F
Sbjct: 121 DRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMF 180
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
D M + V+W+ M+DGY + G N +AL+
Sbjct: 181 DKMFHRDVVTWSIMIDGYCQSGLFN-------------------------------DALL 209
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+FEEM++ + +E+ L +VL AC G L G+M+ ++++ + + LQ++L+ MYA
Sbjct: 210 LFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYA 269
Query: 242 KCGAIKEALIVFHG---------------------VEKHQS--------DVLIWNAMIGG 272
CG++ AL +F +E +S D++ W+AMI G
Sbjct: 270 SCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISG 329
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAW--YFFKSLGKRGM 329
A +E+L LF EMQ +GI PD++T L +++ACAH G L W F G G
Sbjct: 330 YAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGA 389
Query: 330 VPKS----EHYA------------------------CMVDALSRAGQVTEAYEFICQMP- 360
+P + E YA CM+ A + G A F QM
Sbjct: 390 LPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMED 449
Query: 361 --LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD--GRYVGLSNVYAIFKRWD 416
+EP +L C + G L E K + +H+ ++V + +F R
Sbjct: 450 ENIEPNGITFVGVLYACSHAG---LVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGR-- 504
Query: 417 EARTTREAME 426
A REA+E
Sbjct: 505 -ANLLREALE 513
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 166/431 (38%), Positives = 248/431 (57%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN+ Y+ V + + WN++I GYS+ ++LF M GV D +T +
Sbjct: 601 GNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVV 660
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A RL +A + I E D+++ N+L+ +G G + A +VF M + V
Sbjct: 661 SACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIV 720
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+ N+M+ YAK ++ AR++F+ +P+++++SWS++I GY + + +AL IF +M+
Sbjct: 721 TMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAK 780
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K + + + SV+ +CAHLGALD G+ + Y+ + ++ SLIDMY KCG+ KEAL
Sbjct: 781 VKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEAL 840
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF E + D L WN++I GLA +GF KESL LF M G P+ +TFLG+L ACA+
Sbjct: 841 QVFK--EMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACAN 898
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
LV E F+S+ + + P+ +HY C+VD L RAGQ+ +A FI +MP++P +
Sbjct: 899 AKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWR 958
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
LL C HG + +AEIV KKL EL+P + G Y LSN YA RW EA R+ M
Sbjct: 959 ILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTD 1018
Query: 430 VKKYPGWSFVE 440
V+K PG S VE
Sbjct: 1019 VRKSPGCSAVE 1029
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/403 (33%), Positives = 236/403 (58%), Gaps = 3/403 (0%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W+ +++ YS +P ++ LF + R + D + F KA L + +H +
Sbjct: 58 WHALLKAYSHGPHPQDALQLF-RHARWHAADDTYAFTFALKACAGLGWPRCCMQLHGLVV 116
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ G+E ++ +L+++Y CG + +R F+ MP K +VSWN ++ G+A GE+ AR
Sbjct: 117 RKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYARL 176
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+FE MP RNVVSWS +IDGY + EA+ +F M G +E+T+++V+ A +++G
Sbjct: 177 LFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGK 236
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
+ G + Y +GL + + SLID+YAK G+I+ +L VF + + +++ W ++I
Sbjct: 237 ILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRR-NLVSWTSII 295
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS-LGKRGM 329
G AMHG +++ELF +M+ GI P+ ITFL +L AC+HGGLV + FFKS + + +
Sbjct: 296 SGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNI 355
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P +H+ C++D L RAG++ EA + I P+E A++ +LL C +G++++ E K
Sbjct: 356 NPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMK 415
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432
K++ L+ + G +V LSN+ +R+ +A R+ ++ R K
Sbjct: 416 KILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVK 458
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 109/394 (27%), Positives = 188/394 (47%), Gaps = 61/394 (15%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
++ KV + P F WN +IRG ++S P +I+ + K G+ PD+LT+PF+ KA
Sbjct: 504 FAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACA 563
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
R+ +H I K G SD+F+SNSLIH+Y +CG++ YAR VFD M K VSWNS
Sbjct: 564 RINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNS 623
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ GY++C +K+ L +F+ M++ G KA+
Sbjct: 624 LICGYSQCNR-------------------------------FKDILALFKLMQNEGVKAD 652
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
+VT++ V+ AC LG M+RY+ D + + + L +L+D + + G ++ A VF
Sbjct: 653 KVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFF 712
Query: 255 GVEKH-----------------------------QSDVLIWNAMIGGLAMHGFVKESLEL 285
++ + D++ W++MI G + ++LE+
Sbjct: 713 NMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEI 772
Query: 286 FTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSR 345
F +MQ + PD I ++S+CAH G + + + + + + + ++D +
Sbjct: 773 FRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMK 832
Query: 346 AGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
G EA + +M + T S S++ G N+G
Sbjct: 833 CGSAKEALQVFKEMKEKDTLSW-NSIIIGLANNG 865
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 128/272 (47%), Gaps = 34/272 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++Y+ + + + W+ +I GY+++ P ++++LF +M+ G+SP +T +
Sbjct: 169 GEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVV 228
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS- 129
A + K + A+H K G D+ + NSLI +Y G I + VFD M + +
Sbjct: 229 PALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNL 288
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSW S++ G+A G ++ + EL F +MR
Sbjct: 289 VSWTSIISGFAMHG---LSVKAVEL----------------------------FADMRRA 317
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKE 248
G + N +T +SVL AC+H G ++QG + MI + ++ + +IDM + G ++E
Sbjct: 318 GIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLRE 377
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
A + + + +W ++G + +G V+
Sbjct: 378 AEQIIRDFPV-EVNATVWRTLLGCCSKYGEVE 408
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 2/224 (0%)
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
++ A +VF+ + W+ LI G + +A+ +++ + G + +T +L
Sbjct: 501 DLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILK 560
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
ACA + AL++G M ++ GL + + SLI +YA CG + A VF E DV
Sbjct: 561 ACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFD--EMVVKDV 618
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
+ WN++I G + K+ L LF MQ G+ D++T + ++SAC G A Y +
Sbjct: 619 VSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRY 678
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
+ + +VD R GQ+ A + M + +M
Sbjct: 679 IEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTM 722
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 140/330 (42%), Gaps = 23/330 (6%)
Query: 10 LGNIDYSCKVLSHLSNPR-IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPF 68
+G+I S +V + + R + W ++I G++ K++ LF M RAG+ P+ +T+
Sbjct: 269 IGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLS 328
Query: 69 LAKASGRLAKRELAVA-VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A E VA + I + D+ +I M G G + A ++ P +
Sbjct: 329 VLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVE 388
Query: 128 MSVS-WNSMLDGYAKCGEMNMARQVFE--LMPER----NVVSWSALIDGYVKCGDYKEAL 180
++ + W ++L +K GE+ M + + L ER + V S ++ + D +
Sbjct: 389 VNATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVR 448
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+ ++ V S N V + ++ H + G Y + K L LQ L+ +
Sbjct: 449 KLVDQRNSVKSFFNIVRMEAI--KRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAH 506
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
VF +E + +WN +I GLA +++ + + Q G+ PD +T
Sbjct: 507 K----------VFDQIEAPTT--FLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLT 554
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
F +L ACA + E + K G++
Sbjct: 555 FPFILKACARINALNEGEQMHNHITKLGLL 584
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 172/447 (38%), Positives = 257/447 (57%), Gaps = 18/447 (4%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
G++ + KV ++ P WN +I+G+++SK KSI LF +M AGV + TY FL
Sbjct: 72 FGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFL 131
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD-----IVYAREVFDGM 124
A R +H ++ GY S+L++ +LI++Y + GD + AR +FD M
Sbjct: 132 LSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRARYLFDEM 191
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
P V WNS+L GY + G+ + AR+VF+ MPERNV +W+ ++ G+ + G K AL +F+
Sbjct: 192 PDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFD 251
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP----LQTSLIDMY 240
+MR G + ++V LV+ L ACA LG L G+ + Y+ S LP L +LI MY
Sbjct: 252 QMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMY 311
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG---ITPD 297
A CG + A VF E Q + + W+++I G A G E++ +F M G + PD
Sbjct: 312 ASCGVMDLAYKVFE--EIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPD 369
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFI 356
EITF+G L+AC+H GL+ + F+S+ K G++P+ EHY CMVD LSRAG +TEA I
Sbjct: 370 EITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLI 429
Query: 357 CQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL-VELQPDHD--GRYVGLSNVYAIFK 413
MP++P ++ G+LL+GC H ++ V K L E+ P++ G ++ L+NVYA
Sbjct: 430 ESMPMKPNNAVWGALLSGCRLHKNDEIVSHVAKHLSFEIHPNNQAAGYFMLLANVYAADG 489
Query: 414 RWDEARTTREAMETRGVKKYPGWSFVE 440
RW + T R M GVKK G S++E
Sbjct: 490 RWQDTATVRRNMHDIGVKKPSGRSWIE 516
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 139/312 (44%), Gaps = 17/312 (5%)
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
R LA +HAQI +G+ +I N L+ +Y S G + A++VF+ + + WN ++ G
Sbjct: 41 RNLA-KIHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKG 99
Query: 139 YAKCGEMNMARQVFELMP----ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
+ + + ++F+ M E N ++S L+ V+ ++E I + G +N
Sbjct: 100 HTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSN 159
Query: 195 ---EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
L+++ G D R RY+ D+ + SL+ Y + G A
Sbjct: 160 LYVRTNLINLYANGGDGGDFDLKRA--RYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARK 217
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH- 310
VF E + +V W M+ G A +G K +L LF +M+ G+ D++ + LSACA
Sbjct: 218 VFD--EMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAEL 275
Query: 311 GGLVMEAW---YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
G L + W Y ++ R + ++ + G + AY+ ++P T S
Sbjct: 276 GDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIPQRNTVSW 335
Query: 368 LGSLLTGCMNHG 379
S++TG G
Sbjct: 336 -SSIITGFAKQG 346
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 164/416 (39%), Positives = 241/416 (57%), Gaps = 5/416 (1%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAG--VSPDHLTYPFLAKASGRLAKRELAVAV 85
+ WNT+I GY +S P +++ LF ++ G V PD +T ++ EL +
Sbjct: 187 VVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRL 246
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
H + G + + N+++ MY CG + A VF+ + + +VSW +M+ G+A+ G M
Sbjct: 247 HEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMM 306
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
AR +F+ MPER+V W+AL+ GYV+ KEA+ +F EM+ NE+T+V++L AC
Sbjct: 307 EDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSAC 366
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
+ LGAL+ G + Y+ L L++ L TSL+DMYAKCG IK+A+ VF+ + + L
Sbjct: 367 SQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIP--VQNALT 424
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL- 324
W +MI GLA HG E++E F M +G+ PDEITF+G+LSAC H GLV FF +
Sbjct: 425 WTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMH 484
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
K + K +HY+CM+D L RAG + EA + + MP++P A + G+L C HG + L
Sbjct: 485 AKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGNITLG 544
Query: 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
E KLVEL P G YV L+N+YA +A R M GV+K PG S +E
Sbjct: 545 EKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIE 600
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/421 (26%), Positives = 196/421 (46%), Gaps = 68/421 (16%)
Query: 15 YSCKVLSHLSNP--RIFYWNTVIRGYSKSKNPN----KSISLFVKMLRAGVS-PDHLTYP 67
++ +L+ L +P F +N R S + + + L+ +L +G + PDHLT+P
Sbjct: 66 HALAILASLPSPPDSAFPYNAAFRALSLCPHQHLVDRHCLPLYRALLHSGSARPDHLTFP 125
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
FL KA RL R AV + K G+ +D+F+ N+ +H + G + +AR +FD P +
Sbjct: 126 FLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFDESPVR 185
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
VSWN+++ GY + G + R+ EL W DG
Sbjct: 186 DVVSWNTLIGGYVRSG---LPREALELF-------WRLAEDGN----------------- 218
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
+ +EVT++ + CA +G L+ G+ + ++ +KG+ T+ L +++DMY KCG+++
Sbjct: 219 --AVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLE 276
Query: 248 EALIVFHGV-----------------------------EKHQSDVLIWNAMIGGLAMHGF 278
A VF + E + DV WNA++ G +
Sbjct: 277 LANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQ 336
Query: 279 VKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYAC 338
KE++ LF EMQ + P+EIT + LLSAC+ G + + + + +
Sbjct: 337 GKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTS 396
Query: 339 MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQP 396
+VD ++ G + +A ++P++ A S++ G NHG D A +++++ LQP
Sbjct: 397 LVDMYAKCGNIKKAICVFNEIPVQ-NALTWTSMICGLANHGHADEAIEYFQRMIDLGLQP 455
Query: 397 D 397
D
Sbjct: 456 D 456
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 137/298 (45%), Gaps = 35/298 (11%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG ++ + + + +F WN ++ GY ++K ++I+LF +M ++ V P+ +T L
Sbjct: 303 LGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNL 362
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A +L E+ + VH I + + + SL+ MY CG+I A VF+ +P + +
Sbjct: 363 LSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNA 422
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
++W SM+ G A G + EA+ F+ M D+
Sbjct: 423 LTWTSMICGLANHGHAD-------------------------------EAIEYFQRMIDL 451
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKE 248
G + +E+T + VL AC H G ++ GR M K L + + +ID+ + G + E
Sbjct: 452 GLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDE 511
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
A + + + D ++W A+ MHG + +L M++V + P + LL+
Sbjct: 512 AEQLVNAMPM-DPDAVVWGALFFACRMHGNI--TLGEKAAMKLVELDPSDSGIYVLLA 566
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 15/190 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GNI + V + + W ++I G + + +++I F +M+ G+ PD +T+ +
Sbjct: 405 GNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVL 464
Query: 71 KASGRL----AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
A A R+ +H AK E + + +I + G G + A ++ + MP
Sbjct: 465 SACCHAGLVEAGRQFFSLMH---AKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPM 521
Query: 127 KM-SVSWNSM-----LDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
+V W ++ + G GE A ++ EL P + + + L + Y + K+A
Sbjct: 522 DPDAVVWGALFFACRMHGNITLGE-KAAMKLVELDPSDSGI-YVLLANMYAEANMRKKAD 579
Query: 181 VIFEEMRDVG 190
+ MR +G
Sbjct: 580 KVRVMMRHLG 589
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 167/451 (37%), Positives = 262/451 (58%), Gaps = 28/451 (6%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+GN+ Y+ ++ +++ P +F +N VI+ ++K+ + K++ LF ++ G+SPD+ TYPF+
Sbjct: 79 IGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFV 138
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA G L + V+ + K+G E D ++ NSL+ MY G + R+VF+ MP +
Sbjct: 139 FKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDV 198
Query: 130 VSWNSMLDGYAKCGE----MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
VSWN ++ GY KC +++ RQ+F MP + V+ W++++ GYV CG EA +FE
Sbjct: 199 VSWNVLISGYVKCRRYEDAVDVFRQIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFER 258
Query: 186 --MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS---LTL-------PLQ 233
+RDV V +++ D + R M K +S TL +
Sbjct: 259 SPVRDV------VLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTDAVVG 312
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
T+LI+MYAKCG I+++L +F+G++ + D W ++I GLAM+G ++LELF EM G
Sbjct: 313 TALIEMYAKCGFIEKSLEIFNGLK--EKDTASWTSIICGLAMNGKTSKALELFAEMVQTG 370
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEA 352
+ PD+ITF+G+LSAC+HGGLV E F+S+ + PK EHY C++D L RAGQ+ EA
Sbjct: 371 VKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEA 430
Query: 353 YEFICQMP---LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409
E I + P E + G+LL+ C HG +++ E V K+LV ++ + L+N+Y
Sbjct: 431 EELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIY 490
Query: 410 AIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
A RW++ R M+ GVKK PG S VE
Sbjct: 491 ASADRWEDVTKVRRKMKDLGVKKVPGCSSVE 521
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 168/436 (38%), Positives = 259/436 (59%), Gaps = 7/436 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPN-KSISLFVKMLR-AGVSPDHLTYP 67
L ++ Y+ K+ + P +F +NT+I+ +S S + SI++F ++R +G P+ ++
Sbjct: 223 LASLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFV 282
Query: 68 FLAKASGR-LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
F A G + RE V K G + ++F+ N+LI M+G G + AR VFD
Sbjct: 283 FAFGACGNGMCVRE-GEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVD 341
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ SWN+M+ Y G M +A+++F+ M ER+VVSWS +I GYV+ G + EAL F +M
Sbjct: 342 RDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKM 401
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
K NE T+VS L AC++L ALDQG+ + Y+ + + L SLIDMYAKCG I
Sbjct: 402 LQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEI 461
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
A VFH K + V WNAMIGG AMHG +E++ +F +M++ ++P+++TF+ LL+
Sbjct: 462 DSASSVFHE-HKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLN 520
Query: 307 ACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC+HG +V E +F+ + G+ P+ EHY CMVD LSR+G + ++ E I MP+ P
Sbjct: 521 ACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDV 580
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
++ G+LL C + ++ +G+ + E+ P+H G V L N+Y+ RW+EAR RE
Sbjct: 581 AIWGALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNEARMVREKN 640
Query: 426 ETRG-VKKYPGWSFVE 440
E KK PG+S +E
Sbjct: 641 EINSDRKKIPGFSSIE 656
>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
Length = 650
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 172/414 (41%), Positives = 239/414 (57%), Gaps = 5/414 (1%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
F W +I + ++ +++++F M G D + A + + H
Sbjct: 235 FTWTAMISCFERNDLFVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGL 294
Query: 89 IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
+ + G S + + N+LIHMY SC D+V AR +FD + SWNSM+ GY K G + A
Sbjct: 295 VVRAGLGSRVNVQNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDA 354
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
+ +F +MP+++ VSWSA+I G V+ EAL +F+ MR K +EVTLVSV+ AC +L
Sbjct: 355 KALFNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNL 414
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
AL+QG+++ Y+ ++T+ L TSLIDMY KCG ++ AL VF VE+ + WNA
Sbjct: 415 CALEQGKLVHEYIRQYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMVEEKGTPC--WNA 472
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGI-TPDEITFLGLLSACAHGGLVMEAWYFFKSL-GK 326
+I GLAM+G V SL++F+EM+ GI P EITF G+LSAC HGGLV E FFK + K
Sbjct: 473 VIVGLAMNGLVTRSLDMFSEMETSGIAVPSEITFTGVLSACRHGGLVEEGRQFFKLMQNK 532
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
++P HY CMVD L RAG V EA + I MP+ P G+LL C H ++ E
Sbjct: 533 YQIIPNIRHYGCMVDLLGRAGYVREAEDLIQSMPMSPDVPAWGALLGACWKHSDSEVGER 592
Query: 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
VGKKLV+L P HDG LSN+YA W + R +M+ V K G S VE
Sbjct: 593 VGKKLVKLDPHHDGFQTMLSNIYASEGMWQCVKDLRGSMKQH-VAKVAGCSVVE 645
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 109/417 (26%), Positives = 186/417 (44%), Gaps = 49/417 (11%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+ +S ++ + +P F NT+IR + P+ L+ M A PD T+P LA A
Sbjct: 59 LHHSLQLFRLVRSPNAFTCNTLIRAALRQGLPHLCFPLYASMPAA---PDTYTHPLLAAA 115
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
VH+ K G+ +L++ N+L+HMY +CG + AR VFD P +VSW
Sbjct: 116 CAARGDAREGRQVHSHAVKHGFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSW 175
Query: 133 NSMLDGYAKCGEMNMARQVFELMPE-------------------------------RNVV 161
N++L Y + G++ A VF MPE R+
Sbjct: 176 NTILATYVRDGDVEQAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAF 235
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
+W+A+I + + + EAL +F +MR+ G +E +VSV+ ACA + G + +
Sbjct: 236 TWTAMISCFERNDLFVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLV 295
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
+ GL + +Q +LI MY+ C + A +F E D WN+MI G +G V++
Sbjct: 296 VRAGLGSRVNVQNALIHMYSSCLDVVAARRLFDSSES--LDHFSWNSMISGYLKNGRVED 353
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
+ LF M D +++ +++ C EA F ++ + P ++
Sbjct: 354 AKALFNVMP----DKDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVIS 409
Query: 342 ALSRAGQVTEA---YEFICQMPLEPTASMLGSLL-----TGCMNHGKLDLAEIVGKK 390
A + + + +E+I Q T + SL+ GCM L++ ++V +K
Sbjct: 410 ACTNLCALEQGKLVHEYIRQYQYNITIVLGTSLIDMYMKCGCME-AALEVFDMVEEK 465
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 172/511 (33%), Positives = 267/511 (52%), Gaps = 73/511 (14%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L +A+ ++DY+ + + P +N +IRG++ ++P+++I LF +M V
Sbjct: 62 LLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQ 121
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD T+P + K RL +HA I K G+ S F+ N+LIHMY +CG++ AR V
Sbjct: 122 PDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRV 181
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV------------------- 161
FD M + +WNSM GY K G ++F M E ++
Sbjct: 182 FDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADL 241
Query: 162 ---SW-----------------SALIDGYVKCGDY------------------------- 176
W ++L+D Y KCG
Sbjct: 242 ELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGY 301
Query: 177 ------KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTL 230
+EAL +F EM+ NE+T+VS+L +CA LGAL+ G+ + ++ K + LT+
Sbjct: 302 SQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTV 361
Query: 231 PLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ 290
L T+L+D YAKCG+++ ++ VF + +VL W +I GLA +G K++LE F M
Sbjct: 362 TLGTALMDFYAKCGSVESSIEVFGKMP--VKNVLSWTVLIQGLASNGQGKKALEYFYLML 419
Query: 291 IVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQV 349
+ P+++TF+G+LSAC+H GLV E F S+ + G+ P+ EHY CMVD L RAG +
Sbjct: 420 EKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLI 479
Query: 350 TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409
EA++FI MP++P A + +LL C H +++ E K+L+ L+P H G Y+ LSN+Y
Sbjct: 480 EEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIY 539
Query: 410 AIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
A RW++A R M+ +G+KK PG S +E
Sbjct: 540 ASVGRWEDALKVRGEMKEKGIKKTPGCSLIE 570
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 160/410 (39%), Positives = 242/410 (59%), Gaps = 34/410 (8%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK 91
N++IR Y+ S S+ ++ +M + G+ PD T+P + K+ +L ++EL A+H I +
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170
Query: 92 TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQV 151
G+ES++++S +L++MYG+C + + ARQV
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSV-------------------------------SDARQV 199
Query: 152 FELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGAL 211
F+ +P+RN+VSW+ALI GY +++ + +F EM+ G+K EVT+V VL ACAHLGAL
Sbjct: 200 FDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGAL 259
Query: 212 DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIG 271
+QGR + Y+ L L + + T+LIDMYAKCG + EA +F + +V WN +I
Sbjct: 260 NQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMR--VKNVYTWNVLIS 317
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMV 330
G AM+G + +L+ F+ M + PDE+TFLG+L AC H GLV E +F S+ + G+
Sbjct: 318 GYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLR 377
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKK 390
P+ EHY CMVD L RAG + EA + I M ++P + LL C HG + L E KK
Sbjct: 378 PRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKK 437
Query: 391 LVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L+EL+P++ YV L+N+YA +RWD+ RE M+ R V+K PG S +E
Sbjct: 438 LLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIE 487
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 112/264 (42%), Gaps = 33/264 (12%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V + + I WN +I GY+ ++ K I +F +M AG P +T + A L
Sbjct: 198 QVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLG 257
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+ I ++F+ +LI MY CG + A ++F M K +WN ++
Sbjct: 258 ALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLIS 317
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
GYA G A Q F M I E+ K +EVT
Sbjct: 318 GYAMNGRGESALQAFSRM--------------------------IMEKF-----KPDEVT 346
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
+ VLCAC H G +++GR M ++ GL + ++D+ + G + EA + +
Sbjct: 347 FLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAM 406
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVK 280
Q D +IW ++G +HG ++
Sbjct: 407 SM-QPDPIIWRELLGACRIHGNIQ 429
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 169/452 (37%), Positives = 257/452 (56%), Gaps = 15/452 (3%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+ + + ++ Y+ + + + +WNT+I+ Y +++ + I LF +++ +
Sbjct: 54 LLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL- 112
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+ T P + K RL + +H K G+ SD+F+ SL++MY CG+I AR+V
Sbjct: 113 PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKV 172
Query: 121 FDGMPTK-----------MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDG 169
FDGM K VSWN+M++GY K G+ + A ++F MP ++V+W+ +I G
Sbjct: 173 FDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAG 232
Query: 170 YVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229
Y G + +A+ +F M +GS+ + TLVSVL A + L L +GR + YM G L
Sbjct: 233 YELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELD 292
Query: 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
L TSLI+MYAKCG I+ AL VF ++K + V W A+I GL +HG +L LF EM
Sbjct: 293 GILGTSLIEMYAKCGCIESALTVFRAIQKKK--VGHWTAIIVGLGIHGMANHALALFLEM 350
Query: 290 QIVGITPDEITFLGLLSACAHGGLVMEA-WYFFKSLGKRGMVPKSEHYACMVDALSRAGQ 348
G+ P+ I F+G+L+AC H GLV + YF + + + P EHY C+VD L RAG
Sbjct: 351 CKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGH 410
Query: 349 VTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNV 408
+ EA I MP+ P + SLL G NHGK+D+ E ++++E+ P+ G Y+ LSN+
Sbjct: 411 LEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNM 470
Query: 409 YAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
YA W++ RE M RG +K PG S VE
Sbjct: 471 YAASGMWEKVSHVREMMYKRGFRKDPGCSSVE 502
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 161/437 (36%), Positives = 256/437 (58%), Gaps = 10/437 (2%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPF 68
+G + +V + + WN +I GY K + ++ +F +M + + + P+ T
Sbjct: 180 VGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVS 239
Query: 69 LAKASGRLAKRELAVAVHAQI-AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
A L EL +H + + G+ + I N+L+ MY CG + ARE+F+ MP K
Sbjct: 240 TLSACIALKMLELGKEIHRYVREQLGF--TIKIGNALVDMYCKCGHLSIAREIFNDMPIK 297
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+ W SM+ GY CG+++ AR++FE P R+VV W+A+I+GYV+ + +A+ +F EM+
Sbjct: 298 TVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQ 357
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
+ TLV++L CA LG L+QG+ + Y+ + + + + T+LI+MYAKCG I+
Sbjct: 358 IKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIE 417
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
++L +F+G++ + D W ++I GLAM+G ++LELF EM G+ PD+ITF+G+LSA
Sbjct: 418 KSLEIFNGLK--EKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSA 475
Query: 308 CAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMP---LEP 363
C+HGGLV E F+S+ + PK EHY C++D L RAGQ+ EA E I + P E
Sbjct: 476 CSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEV 535
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ G+LL+ C HG +++ E V K+LV ++ + L+N+YA RW++ R
Sbjct: 536 IVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRR 595
Query: 424 AMETRGVKKYPGWSFVE 440
M+ GVKK PG S VE
Sbjct: 596 KMKDLGVKKVPGCSSVE 612
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 208/428 (48%), Gaps = 66/428 (15%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+GN+ Y+ ++ +++ P +F +N VI+ ++K+ + K++ LF ++ G+SPD+ TYPF+
Sbjct: 79 IGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFV 138
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA G L + V+ + K+G E D ++ NSL+ MY G + R+VF+ MP +
Sbjct: 139 FKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDV 198
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSWN ++ GY KC Y++A+ +F M+
Sbjct: 199 VSWNVLISGYVKCRR-------------------------------YEDAVDVFRRMQQQ 227
Query: 190 GS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
S + NE T+VS L AC L L+ G+ + RY+ ++ L T+ + +L+DMY KCG +
Sbjct: 228 SSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQ-LGFTIKIGNALVDMYCKCGHLSI 286
Query: 249 ALIVFHGV-----------------------------EKHQSDVLIWNAMIGGLAMHGFV 279
A +F+ + DV++W AMI G
Sbjct: 287 AREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRF 346
Query: 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACM 339
+++ LF EMQI ++PD T + LL+ CA G + + + + + ++ + +
Sbjct: 347 DDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTAL 406
Query: 340 VDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPD 397
++ ++ G + ++ E + + TAS S++ G +GK A + ++V+ ++PD
Sbjct: 407 IEMYAKCGFIEKSLEIFNGLKEKDTASWT-SIICGLAMNGKTSKALELFAEMVQTGVKPD 465
Query: 398 HDGRYVGL 405
D ++G+
Sbjct: 466 -DITFIGV 472
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 160/439 (36%), Positives = 258/439 (58%), Gaps = 11/439 (2%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPN-------KSISLFVKMLRAGVSPD 62
++D + KV + + WN++I GY+ + N +SI LF++M+ PD
Sbjct: 163 FNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQ-FKPD 221
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
LT + +A G L E VH + +GYE D SN LI+MY CG+++ ++EVF
Sbjct: 222 LLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFS 281
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
GM K SVSWNSM++ Y + G+M + +VFE M R++++W+ +I V D L +
Sbjct: 282 GMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRM 341
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
MR G + T++S+L C+ L A QG+ + + GL +P+ LI+MY+K
Sbjct: 342 ISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSK 401
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG+++ + VF ++ DV+ W A+I M+G K+++ F EM+ GI PD + F+
Sbjct: 402 CGSLRNSFQVFKLMK--TKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFV 459
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
++ AC+H GLV E +F + K + P+ EHYAC+VD LSR+ + +A +FI MPL
Sbjct: 460 AIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPL 519
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
+P +S+ G+LL+ C G ++AE V ++++EL PD G YV +SN+YA +WD+ R+
Sbjct: 520 KPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSI 579
Query: 422 REAMETRGVKKYPGWSFVE 440
R++++ RG+KK PG S++E
Sbjct: 580 RKSIKARGLKKDPGCSWME 598
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 178/363 (49%), Gaps = 43/363 (11%)
Query: 23 LSNP--RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE 80
L++P ++ WN++IR + + ++++SL+ + R + PD T+P + A L E
Sbjct: 73 LASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFE 132
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
+A ++H ++ G+ SDL+I N+LI MY D+ AR+VF+ MP + VSWNS++ GY
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 192
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
G N A ++ Y +++ +F EM + K + +T+ S
Sbjct: 193 ANGYWNEALEI------------------------YYQSIKLFMEMVN-QFKPDLLTITS 227
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
+L AC HLG L+ G+ + YMI G LI+MYAKCG + + VF G++
Sbjct: 228 ILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMK--C 285
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
D + WN+MI +G + +SL++F M+ D IT+ ++++C H
Sbjct: 286 KDSVSWNSMINVYIQNGKMGDSLKVFENMK----ARDIITWNTIIASCVHSEDCNLGLRM 341
Query: 321 FKSLGKRGMVPK-----SEHYACMVDALSRAGQVTEAYEFICQMPLE---PTASMLGSLL 372
+ G+ P S C + A R G+ E + I ++ LE P ++L +
Sbjct: 342 ISRMRTEGVTPDMATMLSILPVCSLLAAKRQGK--EIHGCIFKLGLESDVPVGNVLIEMY 399
Query: 373 TGC 375
+ C
Sbjct: 400 SKC 402
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 118/254 (46%), Gaps = 10/254 (3%)
Query: 135 MLDGYAKCGEMNMARQVFELM-PERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
++ YA + + VF L P NV W+++I G + EAL ++ E + + +
Sbjct: 54 LIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQP 113
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+ T SV+ ACA L + + + ++D G L + +LIDMY + + +A VF
Sbjct: 114 DTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVF 173
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTE-----MQIVG-ITPDEITFLGLLSA 307
E DV+ WN++I G +G+ E+LE++ + M++V PD +T +L A
Sbjct: 174 E--EMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQA 231
Query: 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
C H G + Y + G + +++ ++ G + + E M + + S
Sbjct: 232 CGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSW 291
Query: 368 LGSLLTGCMNHGKL 381
S++ + +GK+
Sbjct: 292 -NSMINVYIQNGKM 304
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 159/439 (36%), Positives = 258/439 (58%), Gaps = 8/439 (1%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-----RAGVSPD 62
++ G +Y+ + +++P F +N +IR Y +K +I++ +ML PD
Sbjct: 31 NHHGETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYILAITVHKQMLGHSHGENPXFPD 90
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
T+PF+ K L L VH K G +S+ I NSL+ MY C + A VF+
Sbjct: 91 KFTFPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVFE 150
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
M + +VSWN+++ G+ + G+M AR +FE + ++ + SW+A++ GY + G + AL
Sbjct: 151 EMTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEF 210
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F M+ V + +E++LVSVL ACA LGAL+ G+ + Y G + + +LI++YAK
Sbjct: 211 FRRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAK 270
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
G++ E +FH + ++ DV+ W+ MI GLA HG +E++ELF EMQ + P+ ITF+
Sbjct: 271 RGSMDEGRRLFHKM--NERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNIITFV 328
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
GLLSACAH GL+ E +F+S+ + + P EHY C+V+ L +G++ +A E I +MP+
Sbjct: 329 GLLSACAHAGLLNEGLGYFESMERDDNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPM 388
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
+P + + G L + C +HG L++ I + L+EL+PD G Y+ LSN+YA +WD
Sbjct: 389 KPDSDIWGLLSSSCRSHGNLEIVAIAMEHLLELEPDDTGNYITLSNLYADLGKWDGVSRM 448
Query: 422 REAMETRGVKKYPGWSFVE 440
R+ M ++ + K PG S +E
Sbjct: 449 RKLMSSKYMNKTPGCSSIE 467
>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 794
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 163/426 (38%), Positives = 245/426 (57%), Gaps = 5/426 (1%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPDHLTYPFLAKASGRL 76
K+ +++ + W T+I GY++ P+++ +F +M+ A V P+ +T A A+G++
Sbjct: 187 KLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQM 246
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
L VH I ++G + + N+L+ M+G CG + A+EVFDGMP K SW SM+
Sbjct: 247 GLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMV 306
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
YAKCG++ A ++F+ +P RNVVSWS ++ Y EA+ IF +M G + +
Sbjct: 307 SAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDA 366
Query: 197 TLVSVLCACAHLGALDQGRMML-RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
TLVSVL ACA L +LD G + Y++ + LT L + IDM+AKCG + A +F
Sbjct: 367 TLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSN 426
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
+E +V+ WN MI +HG +E+L LF E + GI PDE T++G+LSAC+HGGLV
Sbjct: 427 ME--DKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVS 484
Query: 316 EAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
E FK + G+ P++EHYACM+D L + G + EA+E MP+ + G+LL
Sbjct: 485 EGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNA 544
Query: 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
C HG +++ + KL L P G YV +S +YA +W + + R M R VKK P
Sbjct: 545 CRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNP 604
Query: 435 GWSFVE 440
G S +E
Sbjct: 605 GCSSIE 610
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 169/352 (48%), Gaps = 45/352 (12%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSN-PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
+L+F ALS + ++ VL+ + P + T++RG+ ++ P +++LF ++LR +
Sbjct: 69 LLAFCALSDPPRLAHAAAVLAQCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRL 128
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAR 118
+ D T F KA+ A+H K G+ + N+L+HMY S
Sbjct: 129 AVDARTIVFAVKAAA--TSSSPTEAIHCVAFKRGFIGQSVLAGNALVHMYTS-------- 178
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
SML + AR++F+ M +R+VVSW+ LIDGY + G E
Sbjct: 179 ---------------SML--------LPDARKLFDEMADRDVVSWTTLIDGYARGGLPDE 215
Query: 179 ALVIFEEMRDVGSK-ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
A +F M S NEVTLV+ A +G L GR + + +++ G +++ L+ +L+
Sbjct: 216 AWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALV 275
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
DM+ KCG + A VF G+ DV W +M+ A G ++ + +LF E+ +
Sbjct: 276 DMFGKCGCVAAAKEVFDGMPI--KDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNV--- 330
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQV 349
+++ +++A +H + EA F + G+ P A +V LS Q+
Sbjct: 331 -VSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPID---ATLVSVLSACAQL 378
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 34/278 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
SA + G+++ + K+ + N + W+ ++ YS + P+++I +F M+ AGV P
Sbjct: 307 SAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDA 366
Query: 65 TYPFLAKASGRLAKRELAVAVH-AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + A +L ++ ++ I E +SN+ I M+ CGD+ A +F
Sbjct: 367 TLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSN 426
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M K VSWN+M+ + G+ PE EAL +F
Sbjct: 427 MEDKNVVSWNTMIMAHGLHGQ-----------PE--------------------EALHLF 455
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAK 242
+E + G +E T + VL AC+H G + +GR + M I G+ +ID+ K
Sbjct: 456 QEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGK 515
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G ++EA V + +D W A++ MHG V+
Sbjct: 516 VGLLQEAFEVARSMPV-GADEAGWGALLNACRMHGNVE 552
>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 646
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 163/426 (38%), Positives = 245/426 (57%), Gaps = 5/426 (1%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPDHLTYPFLAKASGRL 76
K+ +++ + W T+I GY++ P+++ +F +M+ A V P+ +T A A+G++
Sbjct: 187 KLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQM 246
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
L VH I ++G + + N+L+ M+G CG + A+EVFDGMP K SW SM+
Sbjct: 247 GLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMV 306
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
YAKCG++ A ++F+ +P RNVVSWS ++ Y EA+ IF +M G + +
Sbjct: 307 SAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDA 366
Query: 197 TLVSVLCACAHLGALDQGRMML-RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
TLVSVL ACA L +LD G + Y++ + LT L + IDM+AKCG + A +F
Sbjct: 367 TLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSN 426
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
+E +V+ WN MI +HG +E+L LF E + GI PDE T++G+LSAC+HGGLV
Sbjct: 427 ME--DKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVS 484
Query: 316 EAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
E FK + G+ P++EHYACM+D L + G + EA+E MP+ + G+LL
Sbjct: 485 EGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNA 544
Query: 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
C HG +++ + KL L P G YV +S +YA +W + + R M R VKK P
Sbjct: 545 CRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNP 604
Query: 435 GWSFVE 440
G S +E
Sbjct: 605 GCSSIE 610
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 169/352 (48%), Gaps = 45/352 (12%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSN-PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
+L+F ALS + ++ VL+ + P + T++RG+ ++ P +++LF ++LR +
Sbjct: 69 LLAFCALSDPPRLAHAAAVLAQCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRL 128
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAR 118
+ D T F KA+ A+H K G+ + N+L+HMY S
Sbjct: 129 AVDARTIVFAVKAAA--TSSSPTEAIHCVAFKRGFIGQSVLAGNALVHMYTS-------- 178
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
SML + AR++F+ M +R+VVSW+ LIDGY + G E
Sbjct: 179 ---------------SML--------LPDARKLFDEMADRDVVSWTTLIDGYARGGLPDE 215
Query: 179 ALVIFEEMRDVGSK-ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
A +F M S NEVTLV+ A +G L GR + + +++ G +++ L+ +L+
Sbjct: 216 AWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALV 275
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
DM+ KCG + A VF G+ DV W +M+ A G ++ + +LF E+ +
Sbjct: 276 DMFGKCGCVAAAKEVFDGMPI--KDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNV--- 330
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQV 349
+++ +++A +H + EA F + G+ P A +V LS Q+
Sbjct: 331 -VSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPID---ATLVSVLSACAQL 378
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 34/278 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
SA + G+++ + K+ + N + W+ ++ YS + P+++I +F M+ AGV P
Sbjct: 307 SAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDA 366
Query: 65 TYPFLAKASGRLAKRELAVAVH-AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + A +L ++ ++ I E +SN+ I M+ CGD+ A +F
Sbjct: 367 TLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSN 426
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M K VSWN+M+ + G+ PE EAL +F
Sbjct: 427 MEDKNVVSWNTMIMAHGLHGQ-----------PE--------------------EALHLF 455
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAK 242
+E + G +E T + VL AC+H G + +GR + M I G+ +ID+ K
Sbjct: 456 QEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGK 515
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G ++EA V + +D W A++ MHG V+
Sbjct: 516 VGLLQEAFEVARSMPV-GADEAGWGALLNACRMHGNVE 552
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 164/426 (38%), Positives = 253/426 (59%), Gaps = 8/426 (1%)
Query: 21 SHLSNP--RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
SH +P I W + I + ++ ++ + F +M AGV P+H+T+ L A
Sbjct: 45 SHTHSPIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPL 104
Query: 79 RELAV--AVHAQIAKTGYES-DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSM 135
L ++HA + K G ++ ++ + +L+ MY CG + A +FD M + SVSWN+M
Sbjct: 105 EGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTM 164
Query: 136 LDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE 195
+DG + GE+ A +F+ M ER+ +SW+++I G+VK G +++AL F EM+ G + +
Sbjct: 165 IDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDY 224
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
VT++SVL ACA+LGAL G + R+++ + + + SLIDMY++CG I+ A VF
Sbjct: 225 VTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQ 284
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
+ K ++ WN+MI G A++G +E+LE F M+ G PD ++F G L+AC+H GLV
Sbjct: 285 MPKRS--LVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVD 342
Query: 316 EAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
E FF + + R + P+ EHY C+VD SRAG++ +A I MP++P +LGSLL
Sbjct: 343 EGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAA 402
Query: 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
C HG + LAE + K L E+ P D YV LSN+YA RWD A R+ M+ G+ K P
Sbjct: 403 CRTHGDVGLAERLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKP 462
Query: 435 GWSFVE 440
G+S +E
Sbjct: 463 GFSSIE 468
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 127/270 (47%), Gaps = 33/270 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + + + +S W ++I G+ K +++ F +M AGV PD++T +
Sbjct: 172 GEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVL 231
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L L + ++ + K ++ ++ ISNSLI MY CG I AR+VF+ MP + V
Sbjct: 232 AACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLV 291
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNSM+ G+A ++G+ +EAL F MR G
Sbjct: 292 SWNSMIVGFA--------------------------LNGHA-----EEALEFFNLMRKEG 320
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ + V+ L AC+H G +D+G M + +S + L+D+Y++ G +++A
Sbjct: 321 FRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDA 380
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
L V + ++V++ +++ HG V
Sbjct: 381 LNVIANMPMKPNEVVL-GSLLAACRTHGDV 409
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 169/447 (37%), Positives = 255/447 (57%), Gaps = 48/447 (10%)
Query: 1 MLSFSA-LSYLGNI-----DYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM 54
++S SA +SY N+ Y+ V + + NP +F WNT+ RGY++S NP+ ++ + +M
Sbjct: 62 IVSLSAPMSYAYNVFTWVLSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQM 121
Query: 55 LRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114
+ + + PD TYPFL KA + A+H+ + G+ES +F+ NSL+H+Y
Sbjct: 122 IVSRIEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIY------ 175
Query: 115 VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
A CG+ A VFELM +R++V+ ++I+G+ G
Sbjct: 176 -------------------------AACGDTESAHNVFELMRDRDLVAXISVINGFALNG 210
Query: 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT 234
EAL +F EM G + + T+VS+L A A LGAL+ GR + Y++ GL +
Sbjct: 211 RPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHVTN 270
Query: 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
SL+D+YAKC AI E + + + W ++I GLA++GF +E+LELF EM+ G+
Sbjct: 271 SLLDLYAKCDAIWEX----------ERNAVSWTSLIVGLAVNGFGEEALELFREMEGQGL 320
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAY 353
P EITF+G+L AC+H G++ E + +F+ + + G++P+ EHY CMVD LSRAG V +AY
Sbjct: 321 VPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAY 380
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413
E+I MP++P A +LL C HG L L E L++L+P H G YV LSN+Y
Sbjct: 381 EYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETARSHLLKLEPKHSGDYVLLSNLYTSEC 440
Query: 414 RWDEARTTREAMETRGVKKYPGWSFVE 440
RW + + R +M GVKK G+S VE
Sbjct: 441 RWADVQLIRRSMLKDGVKKTSGYSLVE 467
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 181/511 (35%), Positives = 262/511 (51%), Gaps = 73/511 (14%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L +AL IDY+ + +H+ P +N +IRG + ++P+ ++ LF KM V
Sbjct: 59 VLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQ 118
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
D T+ + KA R+ VHA I K+G++S+ F+ N+LI MY +CG I AR V
Sbjct: 119 HDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHV 178
Query: 121 FDGMPTKMSVSWNSMLDGYAKCG----EMNMARQVFELMPE------------------- 157
FDGMP + V+WNSML GY K G + + R++ EL E
Sbjct: 179 FDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANL 238
Query: 158 ----------------RNVVSWSALIDGYVKCGDY------------------------- 176
RN ++LID Y KCG
Sbjct: 239 EIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGY 298
Query: 177 ------KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTL 230
KEAL +F EM+ NEVT+VSVL +CA LGA + G+ + Y+ K + LT+
Sbjct: 299 AQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTV 358
Query: 231 PLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ 290
L T LID YAKCG I ++ VF E +V W A+I GLA +G K +LE F+ M
Sbjct: 359 TLGTQLIDFYAKCGYIDRSVEVFK--EMSFKNVFTWTALIQGLANNGEGKMALEFFSSML 416
Query: 291 IVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQV 349
+ P+++TF+G+LSAC+H LV + + F S+ + + P+ EHY CMVD L RAG +
Sbjct: 417 ENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFL 476
Query: 350 TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409
EAY+FI MP P A + +LL C H +++AE + + L+P H G Y+ LSN Y
Sbjct: 477 EEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTY 536
Query: 410 AIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
A+ R ++A R ++ + +KK PG S +E
Sbjct: 537 ALVGRVEDAIRVRSLIKEKEIKKIPGCSLIE 567
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 163/432 (37%), Positives = 253/432 (58%), Gaps = 4/432 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G D + +V +++ + WN +I ++ P+K++ LF +M V P+ +T +
Sbjct: 222 GAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVL 281
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + E + + I G+ L ++N+++ MY CG I A+++F+ M K V
Sbjct: 282 SACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIV 341
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DV 189
SW +MLDG+AK G + A +F+ MP + +W+ALI Y + G + AL +F EM+
Sbjct: 342 SWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSK 401
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+K +EVTL+ LCA A LGA+D G + Y+ ++L L TSL+DMYAKCG + +A
Sbjct: 402 DAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKA 461
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ VFH VE+ DV +W+AMIG LAM+G K +L+LF+ M I P+ +TF +L AC
Sbjct: 462 MEVFHAVER--KDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACN 519
Query: 310 HGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E F+ + G+VP+ +HY C+VD RAG + +A FI +MP+ PTA++
Sbjct: 520 HAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVW 579
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C HG ++LAE+ + L+EL+P + G +V LSN+YA W++ R+ M
Sbjct: 580 GALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDS 639
Query: 429 GVKKYPGWSFVE 440
VKK P S ++
Sbjct: 640 DVKKEPWCSSID 651
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 180/387 (46%), Gaps = 66/387 (17%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+ A+S + Y+ V + + P ++ WNT+IRGY+ S +P +S +F+ ML +
Sbjct: 110 LLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSE 169
Query: 61 -PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T+PFL KA+ RL L +H + K SDLFI NSLI+ YGS G A
Sbjct: 170 FPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHR 229
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VF MP K VSWN+M++ +A G +P++ A
Sbjct: 230 VFTNMPGKDVVSWNAMINAFALGG-----------LPDK--------------------A 258
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L++F+EM K N +T+VSVL ACA L+ GR + Y+ + G + L L +++DM
Sbjct: 259 LLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDM 318
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVL-------------------------------IWNA 268
Y KCG I +A +F+ + + D++ WNA
Sbjct: 319 YVKCGCINDAKDLFNKMS--EKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNA 376
Query: 269 MIGGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327
+I +G + +L LF EMQ+ PDE+T + L A A G + + + K
Sbjct: 377 LISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKH 436
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYE 354
+ ++D ++ G + +A E
Sbjct: 437 DINLNCHLATSLLDMYAKCGNLNKAME 463
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 159/441 (36%), Positives = 258/441 (58%), Gaps = 35/441 (7%)
Query: 2 LSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VS 60
L F+ +S + ++ ++ + + P IF WNT+IRG+++S+NP+ ++ LF +M A +
Sbjct: 74 LIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSIL 133
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD T+PFL KA +L L +H+ + + G++S F+ NSL+HMY
Sbjct: 134 PDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMY------------ 181
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
+ G + A QVFE+M R+ V+W+++I+G+ G EAL
Sbjct: 182 -------------------SVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEAL 222
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
++ EM G + + T+VS+L AC LGAL G + YM+ GL +L+D+Y
Sbjct: 223 TLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLY 282
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
+KCG ++A VF +E + V+ W ++I GLA++G E+L+LF E++ G+ P EIT
Sbjct: 283 SKCGNFRDAQKVFDEME--ERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEIT 340
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+G+L AC+H G++ E + +F+ + + G++P+ EH+ CMVD L RAG+V +AY++I M
Sbjct: 341 FVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNM 400
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P+ P A + +LL C HG L+L E+ ++ L+ H G +V LSN+YA +RW + +
Sbjct: 401 PVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQ 460
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R+ M +GVKK PG+S VE
Sbjct: 461 NVRKIMLMKGVKKTPGYSLVE 481
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 162/441 (36%), Positives = 261/441 (59%), Gaps = 35/441 (7%)
Query: 2 LSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VS 60
L F+ +S + ++ ++ + + P IF WNT+IRG+++S+NP+ ++ LF +M A +
Sbjct: 74 LIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSIL 133
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD T+PFL KA +L L +H+ + + G++S F+ NSL+HMY V
Sbjct: 134 PDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYS----------V 183
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
F G+A+ A QVFE+M R+ V+W+++I+G+ G EAL
Sbjct: 184 F----------------GFAES-----AYQVFEIMSYRDRVAWNSVINGFALNGMPNEAL 222
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
++ EM G + + T+VS+L AC LGAL G + YM+ GL +L+D+Y
Sbjct: 223 TLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLY 282
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
+KCG ++A VF +E + V+ W ++I GLA++G E+L+LF E++ G+ P EIT
Sbjct: 283 SKCGNFRDAQKVFDEME--ERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEIT 340
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+G+L AC+H G++ E + +F+ + + G++P+ EH+ CMVD L RAG+V +AY++I M
Sbjct: 341 FVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNM 400
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P+ P A + +LL C HG L+L E+ ++ L+ H G +V LSN+YA +RW + +
Sbjct: 401 PVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQ 460
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R+ M +GVKK PG+S VE
Sbjct: 461 NVRKIMLMKGVKKTPGYSLVE 481
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 168/416 (40%), Positives = 245/416 (58%), Gaps = 10/416 (2%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA----SGRLAKRELAVAVHA 87
+ +IR S+S P+ ++ L+ +LRAG+ P T P L K+ LA+ VH
Sbjct: 41 DALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLALTVHT 100
Query: 88 QIAKTGYESDLFISNSLIHMY-GSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
K G + + +SN+LI ++ G G + + + ++N+++ YA+ G +
Sbjct: 101 HAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLA 160
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
AR +F+ MP RN VSWSA+++GYV+ GD +EAL IF M+ + ++ LV VL ACA
Sbjct: 161 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACA 220
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ-SDVLI 265
GAL+QG+ + Y+ G+ + L T+L+DMY+KCG ++ A+ VF E+ Q +VL
Sbjct: 221 QHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVF---ERMQYKNVLA 277
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
W MI GLAMHG E++ LF +M+ GI PD+I F+G+L AC H GLV + F S+
Sbjct: 278 WTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMV 337
Query: 326 KR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
++ G+ PK EHY CMVD L+R G + EA E I +MP+EP A + G+L+ GC H ++ A
Sbjct: 338 RKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFA 397
Query: 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
E V K + L+PD G YV LSN+YA R AR R M +GV K PG S VE
Sbjct: 398 EYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVE 453
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 114/251 (45%), Gaps = 33/251 (13%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W+ ++ GY ++ + +++ +F +M V PD + A + E VH +
Sbjct: 177 WSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLK 236
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
G + +LF +L+ MY CG++ A +VF+ M K ++W +M+ G A G +
Sbjct: 237 AHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGS---- 292
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
EA+++F +M G + +++ + VLCAC H G
Sbjct: 293 ---------------------------EAVMLFAQMESSGIRPDDIAFIGVLCACTHAGL 325
Query: 211 LDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
+D+GR + M+ K G+ + ++D+ A+ G + EA + + + D LIW A+
Sbjct: 326 VDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPM-EPDALIWGAL 384
Query: 270 IGGLAMHGFVK 280
+ G H V+
Sbjct: 385 MAGCRFHKNVE 395
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 41/168 (24%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G + + V + + W T+I+G + ++++ LF +M +G+ PD + +
Sbjct: 255 SKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFI 314
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ L HA + G RE+FD M K
Sbjct: 315 GV-----------LCACTHAGLVDKG------------------------RELFDSMVRK 339
Query: 128 MSVS-----WNSMLDGYAKCGEMNMARQVFELMP-ERNVVSWSALIDG 169
+ + M+D A+ G + A+++ + MP E + + W AL+ G
Sbjct: 340 YGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAG 387
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 164/438 (37%), Positives = 262/438 (59%), Gaps = 5/438 (1%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNP-NKSISLFVKMLRA-GVSPDHL 64
L+ ++ Y+ K+ + P +F +NT+I+ +S S + + S+ +F + + G+ P+
Sbjct: 57 LAACASLSYAHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRY 116
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
++ F A G + V K G E+++F+ N+LI MYG G + +++VF
Sbjct: 117 SFVFAFSACGNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWA 176
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ SWN+++ Y G M++A+++F+ M ER+VVSWS +I GYV+ G + EAL F
Sbjct: 177 VDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFH 236
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+M +G K NE TLVS L AC++L ALDQG+ + Y+ + + L S+IDMYAKCG
Sbjct: 237 KMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCG 296
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
I+ A VF K + V +WNAMIGG AMHG E++ +F +M++ I+P+++TF+ L
Sbjct: 297 EIESASRVFFE-HKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIAL 355
Query: 305 LSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L+AC+HG +V E +F+ + + P+ EHY CMVD LSR+G + EA + I MP+ P
Sbjct: 356 LNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAP 415
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
++ G+LL C + ++ +G+ + + P+H G +V LSN+Y+ RW+EAR RE
Sbjct: 416 DVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEARILRE 475
Query: 424 AME-TRGVKKYPGWSFVE 440
E +R KK PG S +E
Sbjct: 476 KNEISRDRKKIPGCSSIE 493
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/325 (20%), Positives = 131/325 (40%), Gaps = 61/325 (18%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
HAQ+ T S +N L+ + +C + YA ++FD +P +N+M+ ++
Sbjct: 35 THAQLITTALISHPVSANKLLKL-AACASLSYAHKLFDQIPQPDLFIYNTMIKAHS---- 89
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDVGSKANEVTLVSVLC 203
L P C + +L++F + +D+G N + V
Sbjct: 90 ---------LSPH--------------SCHN---SLIVFRSLTQDLGLFPNRYSFVFAFS 123
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH-GVEK---- 258
AC + + +G + + + GL + + +LI MY K G + E+ VF V++
Sbjct: 124 ACGNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYS 183
Query: 259 ------------------------HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
+ DV+ W+ +I G G E+L+ F +M +G
Sbjct: 184 WNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGP 243
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
P+E T + L+AC++ + + + +GK + A ++D ++ G++ A
Sbjct: 244 KPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASR 303
Query: 355 FICQMPLEPTASMLGSLLTGCMNHG 379
+ ++ + +++ G HG
Sbjct: 304 VFFEHKVKQKVWLWNAMIGGFAMHG 328
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 161/434 (37%), Positives = 258/434 (59%), Gaps = 7/434 (1%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S L ++DY+ V S++SNP ++ + +I G+ S +SL+ +M+ V PD+
Sbjct: 72 STLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVIT 131
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ KA RE +HAQ+ K G+ S + ++ +YG G++V A+++FD MP +
Sbjct: 132 SVLKACDLKVCRE----IHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDR 187
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
V+ M++ Y++CG + A ++F+ + ++ V W+A+IDG V+ + +AL +F EM+
Sbjct: 188 DHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQ 247
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
ANE T V VL AC+ LGAL+ GR + ++ ++ + L+ + +LI+MY++CG I
Sbjct: 248 MENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDIN 307
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
EA VF + DV+ +N MI GLAMHG E++ F +M G P+++T + LL+A
Sbjct: 308 EARRVFRVM--RDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNA 365
Query: 308 CAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+HGGL+ F S+ + V P+ EHY C+VD L R G++ EAY FI +P+EP
Sbjct: 366 CSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHI 425
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
MLG+LL+ C HG ++L E + K+L E + G YV LSN+YA +W E+ RE+M
Sbjct: 426 MLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMR 485
Query: 427 TRGVKKYPGWSFVE 440
G++K PG S +E
Sbjct: 486 DSGIEKEPGCSTIE 499
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 139/297 (46%), Gaps = 9/297 (3%)
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
++HA+I +T ++ D F+ LI + + + YA +VF + + +M+DG+ G
Sbjct: 47 SIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSG 106
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
++ M +V+ + +I +K D K I ++ +G ++ + ++
Sbjct: 107 RSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREIHAQVLKLGFGSSRSVGLKMME 166
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
G L + M M D+ T +I+ Y++CG IKEAL +F V+ D
Sbjct: 167 IYGKSGELVNAKKMFDEMPDRDHVAA----TVMINCYSECGFIKEALELFQDVKI--KDT 220
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAWYFFK 322
+ W AMI GL + + ++LELF EMQ+ ++ +E T + +LSAC+ G L + W
Sbjct: 221 VCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSF 280
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+R + A +++ SR G + EA M + S ++++G HG
Sbjct: 281 VENQRMELSNFVGNA-LINMYSRCGDINEARRVFRVMRDKDVIS-YNTMISGLAMHG 335
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 179/502 (35%), Positives = 260/502 (51%), Gaps = 67/502 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYS-KSKNPNKSISLFVKMLRAGVSPDH 63
+A S ++ + V +H+ +P + +N++IR ++ S + + + F +M + G+ PD+
Sbjct: 61 AAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDN 120
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG----------- 112
TYPFL KA + L +HA + K G+ D+F+ NSLI Y CG
Sbjct: 121 FTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLF 180
Query: 113 ------DIVY----------------AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
D+V A ++FD MP + VSWN+MLDGYAK GEM+ A +
Sbjct: 181 LAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFE 240
Query: 151 VFELMPERNVVSWSALIDGYVKCGDY-------------------------------KEA 179
+FE MP RN+VSWS ++ GY K GD +EA
Sbjct: 241 LFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREA 300
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
++ +M + G + ++ L+S+L ACA G L G+ + M + + IDM
Sbjct: 301 TELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDM 360
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
YAKCG + A VF G+ + DV+ WN+MI G AMHG +++LELF+ M G PD
Sbjct: 361 YAKCGCLDAAFDVFSGMMA-KKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTY 419
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
TF+GLL AC H GLV E +F S+ K G+VP+ EHY CM+D L R G + EA+ +
Sbjct: 420 TFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRS 479
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP+EP A +LG+LL C H +DLA V ++L +L+P G Y LSN+YA W
Sbjct: 480 MPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQAGDWMNV 539
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R M+ G +K G S +E
Sbjct: 540 ANVRLQMKNTGGEKPSGASSIE 561
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 163/434 (37%), Positives = 249/434 (57%), Gaps = 4/434 (0%)
Query: 9 YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPF 68
Y N + + ++ +F WN+VI ++S + +++ F M + + P+ T+P
Sbjct: 22 YSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPC 81
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
K+ L H Q G+E DLF+S++L+ MY CG++ AR +FD + +
Sbjct: 82 AIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRN 141
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-R 187
VSW SM+ GY + + + A +VF+ M ER+V+SW+++I Y + G E++ IF M +
Sbjct: 142 IVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVK 201
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
D N VTL +VL ACAH G+ G+ + +I GL + + TS+IDMY KCG ++
Sbjct: 202 DGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVE 261
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A F + + +V W+AM+ G MHG KE+LE+F EM + G+ P+ ITF+ +L+A
Sbjct: 262 MARKAFDRMR--EKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAA 319
Query: 308 CAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H GL+ E W++FK++ V P EHY CMVD L RAG + EA++ I M L P
Sbjct: 320 CSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFV 379
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ G+LL C H +DL EI +KL EL P + G YV LSN+YA RW++ R M+
Sbjct: 380 VWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMK 439
Query: 427 TRGVKKYPGWSFVE 440
G+ K PG+S V+
Sbjct: 440 NSGLVKPPGFSLVD 453
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 141/332 (42%), Gaps = 67/332 (20%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNK--------------------- 46
S G + + + +S+ I W ++I GY ++ + ++
Sbjct: 122 SKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIA 181
Query: 47 ----------SISLFVKMLRAG-VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYE 95
S+ +F +M++ G ++ + +T + A + L +H Q+ K G E
Sbjct: 182 VYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLE 241
Query: 96 SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELM 155
S++F+ S+I MY CG + AR+ FD M K SW++M+ GY G
Sbjct: 242 SNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHA---------- 291
Query: 156 PERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGR 215
KEAL +F EM G K N +T VSVL AC+H G L++G
Sbjct: 292 ---------------------KEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGW 330
Query: 216 MMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLA 274
+ M + + + ++D+ + G +KEA + G+ K + D ++W A++G
Sbjct: 331 HWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGM-KLRPDFVVWGALLGACR 389
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
MH V L + ++ + P + LLS
Sbjct: 390 MHKNV--DLGEISARKLFELDPKNCGYYVLLS 419
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 159/429 (37%), Positives = 239/429 (55%), Gaps = 8/429 (1%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKS-----ISLFVKMLRAGVSPDHLTYPFLAKA 72
+ +S + W+ +I GY++S +K L +M R GV P+ +T+ + KA
Sbjct: 336 ETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKA 395
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
E +HA+I+K G+ESD + ++ +MY CG I A +VF M K V+W
Sbjct: 396 CSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAW 455
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
S+L Y KCG++ A +VF M RNVVSW+ +I GY + GD + + M+ G +
Sbjct: 456 ASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQ 515
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ VT++S+L AC L AL++G+++ + GL + TSLI MY+KCG + EA V
Sbjct: 516 PDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTV 575
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F + D + WNAM+ G HG E+++LF M + P+EITF ++SAC G
Sbjct: 576 FDKISNR--DTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAG 633
Query: 313 LVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
LV E F+ + + M P +HY CMVD L RAG++ EA EFI +MP EP S+ +L
Sbjct: 634 LVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHAL 693
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
L C +H + LAE ++ L+P + YV LSN+YA RWD++ R+ M+ +G+K
Sbjct: 694 LGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLK 753
Query: 432 KYPGWSFVE 440
K G S +E
Sbjct: 754 KDRGESSIE 762
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 108/401 (26%), Positives = 177/401 (44%), Gaps = 56/401 (13%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G I +C++ + + W +I+ ++ + N++ L+ KML+AG+SP+ +T+
Sbjct: 225 SKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFV 284
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
L + +H+ I++ G E+D+ ++N+LI MY C I ARE FD M +
Sbjct: 285 SLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKR 344
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+SW++M+ GYA+ GY E + E MR
Sbjct: 345 DVISWSAMIAGYAQ--------------------------SGYQDKESLDEVFQLLERMR 378
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G N+VT +S+L AC+ GAL+QGR + + G LQT++ +MYAKCG+I
Sbjct: 379 REGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIY 438
Query: 248 EALIVFHGVEKHQ-----------------------------SDVLIWNAMIGGLAMHGF 278
EA VF +E +V+ WN MI G A G
Sbjct: 439 EAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGD 498
Query: 279 VKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYAC 338
+ + EL + M++ G PD +T + +L AC + K G+ +
Sbjct: 499 IAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATS 558
Query: 339 MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
++ S+ G+VTEA ++ T + ++L G HG
Sbjct: 559 LIGMYSKCGEVTEARTVFDKISNRDTVA-WNAMLAGYGQHG 598
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 188/385 (48%), Gaps = 39/385 (10%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G++ +V ++ + W+++I Y+ + +P K+ F +M A + P+ +T+
Sbjct: 124 SKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFL 183
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ KA + E A +H + +G E+D+ ++ +LI MY
Sbjct: 184 SILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMY------------------- 224
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+KCGE+++A ++F+ M ERNVVSW+A+I + EA ++E+M
Sbjct: 225 ------------SKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKML 272
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G N VT VS+L +C AL++GR + ++ ++GL + + +LI MY KC I+
Sbjct: 273 QAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQ 332
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV-KESL----ELFTEMQIVGITPDEITFL 302
+A F + K DV+ W+AMI G A G+ KESL +L M+ G+ P+++TF+
Sbjct: 333 DARETFDRMSKR--DVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFM 390
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+L AC+ G + + + K G + + ++ G + EA + +M +
Sbjct: 391 SILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENK 450
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIV 387
+ SLLT + G L AE V
Sbjct: 451 NVVA-WASLLTMYIKCGDLTSAEKV 474
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 106/452 (23%), Positives = 192/452 (42%), Gaps = 82/452 (18%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82
L+ PR V R K+ ++I L + + G+ + TY + + +L + E
Sbjct: 39 LAGPRSVSGGEVWR-LCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDG 97
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
VH Q+ + G D+++ NSLI+ Y +K
Sbjct: 98 KMVHKQLDELGLAIDIYLGNSLINFY-------------------------------SKF 126
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
G++ QVF M R+VV+WS++I Y +A FE M+D + N +T +S+L
Sbjct: 127 GDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSIL 186
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
AC + L++ R + + G+ + + T+LI MY+KCG I A +F ++ + +
Sbjct: 187 KACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMK--ERN 244
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC-------------- 308
V+ W A+I A H + E+ EL+ +M GI+P+ +TF+ LL++C
Sbjct: 245 VVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHS 304
Query: 309 --AHGGL-------------------VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347
+ GL + +A F + KR ++ ++ M+ +++G
Sbjct: 305 HISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVIS----WSAMIAGYAQSG 360
Query: 348 -----QVTEAYEFICQMPLE---PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399
+ E ++ + +M E P S+L C HG L+ + ++ ++ + D
Sbjct: 361 YQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESD 420
Query: 400 -GRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
+ N+YA EA ME + V
Sbjct: 421 RSLQTAIFNMYAKCGSIYEAEQVFSKMENKNV 452
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 126/271 (46%), Gaps = 33/271 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + KV S +S + WN +I GY++S + K L M G PD +T +
Sbjct: 466 GDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISIL 525
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+A G L+ E VHA+ K G ESD ++ SLI MY CG++ AR VFD + + +V
Sbjct: 526 EACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTV 585
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WN+ML GY + G + P EA+ +F+ M
Sbjct: 586 AWNAMLAGYGQHG----------IGP---------------------EAVDLFKRMLKER 614
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
NE+T +V+ AC G + +GR + R M D + ++D+ + G ++EA
Sbjct: 615 VPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEA 674
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+ + D+ +W+A++G H V+
Sbjct: 675 EEFIQRM-PCEPDISVWHALLGACKSHDNVQ 704
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 82/197 (41%), Gaps = 15/197 (7%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G + + V +SN WN ++ GY + +++ LF +ML+ V P+ +T+
Sbjct: 564 SKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFT 623
Query: 68 FLAKASGRLA----KRELAVAVHAQIA-KTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
+ A GR RE+ + K G + ++ + G G + A E
Sbjct: 624 AVISACGRAGLVQEGREIFRIMQEDFRMKPGKQH----YGCMVDLLGRAGRLQEAEEFIQ 679
Query: 123 GMPTKMSVS-WNSMLDGYAKCGEMNMAR----QVFELMPERNVVSWSALIDGYVKCGDYK 177
MP + +S W+++L + +A + L P N + L + Y + G +
Sbjct: 680 RMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPS-NASVYVTLSNIYAQAGRWD 738
Query: 178 EALVIFEEMRDVGSKAN 194
++ + + M D G K +
Sbjct: 739 DSTKVRKVMDDKGLKKD 755
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 164/442 (37%), Positives = 255/442 (57%), Gaps = 35/442 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKS-ISLFVKMLRAGV 59
++ F ALS G+IDY+ K+ S + P IF WN++IRG S+S+ P+K + LF KM+R G
Sbjct: 28 IIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGY 87
Query: 60 -SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
+P+ T F+ KA ++ E VHA + K+G+ S F+ +L++ Y
Sbjct: 88 PNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFY---------- 137
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
AKC ++ +A +VF+ + +RN+V+WS +I GY + G E
Sbjct: 138 ---------------------AKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNE 176
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
AL +F +M+ G +EVT+VSV+ ACA GALD G+ + Y+ + + L L T+L++
Sbjct: 177 ALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVN 236
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MYAKCG I+ A VF + D W++MI GLA++G +++LE F M+ + P+
Sbjct: 237 MYAKCGCIERAKEVFDAMP--VKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNH 294
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
+TF+G+LSACAH GLV E ++ S+ + G+VP E Y CMVD L RA V +A +
Sbjct: 295 VTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVET 354
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP+ P + +LL GC LD +E+V ++L+EL+P + Y+ LSN+YA +W++
Sbjct: 355 MPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKM 414
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R+ M+ G+K PG S +E
Sbjct: 415 SQVRKKMKGMGIKAVPGCSSIE 436
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 165/436 (37%), Positives = 253/436 (58%), Gaps = 3/436 (0%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A + G + + KV ++ + W ++ Y +++N +++ LF KM +GV PD L
Sbjct: 194 AYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQLI 253
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ A G + + A+H+ + + IS++LI +Y SC ++ A ++++ MP
Sbjct: 254 LATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKLYNEMP 313
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
K VS +M+ GYA+ ++ +AR +F+ MPE++VVSWSA+I GYV EAL +F
Sbjct: 314 RKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNG 373
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M++ G +++E+T++SV+ ACA+LG+LD+ + + ++ + GL+ L + +LIDM+AKCG
Sbjct: 374 MQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGG 433
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
I AL VF+ E +V+ W +MI AMHG K SL LF +M+ G P+E+TFL LL
Sbjct: 434 INLALNVFN--EMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLL 491
Query: 306 SACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
AC H GLV E F S+ ++ G+ PK EHY CMVD L RA + EA I M LEP
Sbjct: 492 YACCHAGLVHEGRLLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLIESMHLEPN 551
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
+ GSLL C HG L L KK+++L P+HDG V L +Y + A+ R
Sbjct: 552 VPIWGSLLAACWMHGDLKLGAFAAKKILQLDPNHDGASVLLLKIYMKSDNLNNAQEVRGV 611
Query: 425 METRGVKKYPGWSFVE 440
M+ V K G S++E
Sbjct: 612 MKLHRVSKETGLSWME 627
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 148/338 (43%), Gaps = 62/338 (18%)
Query: 56 RAGV-SPDHLTYPFLAKASGRL-AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113
RAG+ +P P L +++ R A HA +TG D F+ +L Y +CG
Sbjct: 141 RAGLPAPGPRALPALLRSAARCEGAGAYVAATHALAVRTGALDDGFVGTALAGAYAACGC 200
Query: 114 IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKC 173
+ R+VFDGM + VSW MLD Y + RN
Sbjct: 201 VRDTRKVFDGMAVRDVVSWGVMLDSYCQ---------------TRN-------------- 231
Query: 174 GDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
YKEAL++F +M++ G +++ L +VL AC H+ L G+ + YM+ + + +
Sbjct: 232 --YKEALLLFAKMKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHIS 289
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKH-----------------------------QSDVL 264
++LI +YA C ++ A +++ + + + DV+
Sbjct: 290 SALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVV 349
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
W+AMI G E+L LF MQ GI DEIT L ++SACA+ G + +A + +
Sbjct: 350 SWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFI 409
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
G+ ++D ++ G + A +MPL+
Sbjct: 410 KNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLK 447
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 158/438 (36%), Positives = 251/438 (57%), Gaps = 35/438 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S S G D++ ++ + + W +I G+ ++ + ++++ FV+M + GV+ + +
Sbjct: 146 SGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEM 205
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + KA+G++ +VH +TG + D+FI +SL+ MYG
Sbjct: 206 TVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYG-------------- 251
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
KC + A++VF+ MP RNVV+W+ALI GYV+ + + +++F
Sbjct: 252 -----------------KCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVF 294
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
EEM NE TL SVL ACAH+GAL +GR + YMI + + T+LID+Y KC
Sbjct: 295 EEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKC 354
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G ++EA++VF + H+ +V W AMI G A HG+ +++ +LF M ++P+E+TF+
Sbjct: 355 GCLEEAILVFERL--HEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMA 412
Query: 304 LLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+LSACAHGGLV E F S+ G+ M PK++HYACMVD R G + EA I +MP+E
Sbjct: 413 VLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPME 472
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
PT + G+L C+ H +L + ++++LQP H GRY L+N+Y+ + WDE R
Sbjct: 473 PTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVR 532
Query: 423 EAMETRGVKKYPGWSFVE 440
+ M+ + V K PG+S++E
Sbjct: 533 KQMKDQQVVKSPGFSWIE 550
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 145/301 (48%), Gaps = 37/301 (12%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISL--FVKMLRAGVSPDHLTYPFLAKA 72
Y+ ++L L I W+++I +S N+ +S + M R GV P T+P L KA
Sbjct: 54 YARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKA 113
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+L HA I K G +SD F+ NSLI
Sbjct: 114 VFKLRDSN-PFQFHAHIVKFGLDSDPFVRNSLI--------------------------- 145
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
GY+ G + A ++F+ +++VV+W+A+IDG+V+ G EA+V F EM+ G
Sbjct: 146 ----SGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVA 201
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG-LSLTLPLQTSLIDMYAKCGAIKEALI 251
ANE+T+VSVL A + + GR + ++ G + + + +SL+DMY KC +A
Sbjct: 202 ANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQK 261
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF E +V+ W A+I G + + +F EM + P+E T +LSACAH
Sbjct: 262 VFD--EMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHV 319
Query: 312 G 312
G
Sbjct: 320 G 320
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 159/440 (36%), Positives = 255/440 (57%), Gaps = 9/440 (2%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G++ + +V S + + WN++I Y ++ ++++ +FV+M+ +G+ PD +T
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A L + + +HA++ KT + DL + N+L+ MY C + AR VFD M
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ VS SM+ GYA+ + AR +F M +RNVVSW+ALI GY + G+ +EAL +F +
Sbjct: 313 RNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLL 372
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT------LPLQTSLIDMY 240
+ T ++L ACA+L L GR +++ +G + + SLIDMY
Sbjct: 373 KRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMY 432
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
KCG+I++ VF ++ + D + WNA+I G A +G+ E+L++F +M + G PD +T
Sbjct: 433 MKCGSIEDGSRVFEKMK--ERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVT 490
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+G+L AC+H GLV E ++F S+ + G++P +HY CMVD L RAG + EA I MP
Sbjct: 491 MIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMP 550
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
+ P A + GSLL C HG +++ + +KL+E+ P + G YV LSN+YA RW +
Sbjct: 551 VNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVR 610
Query: 421 TREAMETRGVKKYPGWSFVE 440
R+ M +GV K PG S++E
Sbjct: 611 VRKLMRQQGVTKQPGCSWIE 630
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 163/314 (51%), Gaps = 12/314 (3%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VHA+I T + ++FI N LI +YG C + AR++FD MP + + +WNS++ K G
Sbjct: 37 VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGF 96
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
++ A ++F MPE + SW++++ G+ + ++E+L F +M NE + S L A
Sbjct: 97 LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
CA L L+ G + + S + + ++LIDMY+KCG++ A VF G+ + +++
Sbjct: 157 CAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGM--IERNLV 214
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA-----HGGLVMEAWY 319
WN++I +G E+LE+F M G+ PDE+T ++SACA GL + A
Sbjct: 215 TWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARV 274
Query: 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+ + +V + +VD ++ +V EA +M + S S+++G
Sbjct: 275 VKTNKFRDDLVLGN----ALVDMYAKCSKVNEARRVFDRMSIRNVVSET-SMVSGYARAA 329
Query: 380 KLDLAEIVGKKLVE 393
+ A + K+ +
Sbjct: 330 SVKAARFMFSKMTQ 343
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 151/337 (44%), Gaps = 61/337 (18%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L+ G +D + ++ + P WN+++ G+++ +S+ FVKM R +
Sbjct: 88 ISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNE 147
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
++ A L + VHA ++K+ Y +D+++ ++LI MY CG + A EVF G
Sbjct: 148 YSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSG 207
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + V+WNS LI Y + G EAL +F
Sbjct: 208 MIERNLVTWNS-------------------------------LITCYEQNGPASEALEVF 236
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQG-RMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
M D G + +EVTL SV+ ACA L AL +G ++ R + L L +L+DMYAK
Sbjct: 237 VRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAK 296
Query: 243 CGAIKEALIVFHGV-----------------------------EKHQSDVLIWNAMIGGL 273
C + EA VF + + Q +V+ WNA+I G
Sbjct: 297 CSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGY 356
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+G +E+L LF ++ I P TF LLSACA+
Sbjct: 357 TQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACAN 393
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 111/306 (36%), Gaps = 73/306 (23%)
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
N +L +C + R++ ++ S+ + +Q LID+Y KC + +A +F
Sbjct: 14 NSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLF 73
Query: 254 HGVEKHQS-----------------------------DVLIWNAMIGGLAMHGFVKESLE 284
+ + + D WN+M+ G A H +ESLE
Sbjct: 74 DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLE 133
Query: 285 LFTEMQIVGITPDEITFLGLLSACA-----------HG---------------------- 311
F +M +E +F LSACA H
Sbjct: 134 YFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYS 193
Query: 312 --GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM---PLEPTAS 366
G V A F + +R +V + ++ + G +EA E +M LEP
Sbjct: 194 KCGSVACAEEVFSGMIERNLVT----WNSLITCYEQNGPASEALEVFVRMMDSGLEPDEV 249
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVG--LSNVYAIFKRWDEARTTREA 424
L S+++ C + L + ++V+ D +G L ++YA + +EAR +
Sbjct: 250 TLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDR 309
Query: 425 METRGV 430
M R V
Sbjct: 310 MSIRNV 315
>gi|359485617|ref|XP_003633296.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Vitis vinifera]
Length = 531
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 168/434 (38%), Positives = 255/434 (58%), Gaps = 15/434 (3%)
Query: 17 CKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRL 76
C S+L +N++IRGY P+K++ +F ML P++LT+P + K +
Sbjct: 46 CSNASNLKWMATLLYNSLIRGYLNFVEPHKTLLIFTHMLAHQAPPNNLTFPSIIKKAASC 105
Query: 77 AKR---ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
+ + +H + K G DLFI SL+ +Y + A VF+ + VS N
Sbjct: 106 SPSLAFMIGTPLHTHVIKRGLSHDLFIQTSLVVLYARLCKVSDACRVFEEISRPCVVSSN 165
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF------EEMR 187
+MLD K G+M A +FE MPER+VVSW+++I+G+ + ++EA+ F E++R
Sbjct: 166 AMLDALGKNGDMGSALFLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVR 225
Query: 188 DVGSKANEVTLVSVLCACAHL---GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
K NE T VSVL +C +L GAL QG+ + Y+I + T+ + T+LI +Y K G
Sbjct: 226 SCLVKPNEATFVSVLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTG 285
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
++ A+ +F+G+ V WNAMI LA +G K++L+LF +M++ G+ PDE+TF+ +
Sbjct: 286 CLENAMKIFNGMVV--KGVCTWNAMISSLACNGREKQALDLFEKMKMQGLCPDEVTFVAV 343
Query: 305 LSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
++ACA V+ FF+S+ G+VP+ HY C+VD L RAG + EA EFI +MP EP
Sbjct: 344 ITACARSKFVVLGLGFFQSMWCDFGVVPRMVHYGCVVDLLGRAGLLEEATEFIKRMPFEP 403
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
A++LG+LL C HG ++L VG++L+ELQP H GRYV LSN+YA + W A R+
Sbjct: 404 DATVLGALLGACKVHGAIELGNEVGRRLLELQPHHCGRYVTLSNIYAGGEIWGHAADWRK 463
Query: 424 AMETRGVKKYPGWS 437
AM G+ K P +S
Sbjct: 464 AMTEAGISKIPAYS 477
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 120/285 (42%), Gaps = 42/285 (14%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML------RAGV 59
AL G++ + + + + W ++I G+ +++ ++I FVKM+ V
Sbjct: 170 ALGKNGDMGSALFLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRSCLV 229
Query: 60 SPDHLTYPFLAKASGRL---AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
P+ T+ + + L +H I + E +F+ +LI +YG G +
Sbjct: 230 KPNEATFVSVLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGCLEN 289
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
A ++F+GM K +WN+M+ A C G
Sbjct: 290 AMKIFNGMVVKGVCTWNAMISSLA-CN------------------------------GRE 318
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTS 235
K+AL +FE+M+ G +EVT V+V+ ACA + G + M D G+ +
Sbjct: 319 KQALDLFEKMKMQGLCPDEVTFVAVITACARSKFVVLGLGFFQSMWCDFGVVPRMVHYGC 378
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
++D+ + G ++EA F + D + A++G +HG ++
Sbjct: 379 VVDLLGRAGLLEEA-TEFIKRMPFEPDATVLGALLGACKVHGAIE 422
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 171/447 (38%), Positives = 257/447 (57%), Gaps = 18/447 (4%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
G++ + KV ++ P WN +I+G+++SK KSI LF +M AGV + TY FL
Sbjct: 72 FGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFL 131
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD-----IVYAREVFDGM 124
A R +H ++ GY S+L++ +LI++Y + GD + A +FD M
Sbjct: 132 LSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRALYLFDEM 191
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
P V WNS+L GY + G+ + AR+VF+ MPERNV +W+ ++ G+ + G K AL +F+
Sbjct: 192 PDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFD 251
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP----LQTSLIDMY 240
+MR G + ++V LV+ L ACA LG L G+ + Y+ S LP L +LI MY
Sbjct: 252 QMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMY 311
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG---ITPD 297
A CGA+ A +F E Q + + W+++I G A G E++ +F M G + PD
Sbjct: 312 ASCGAMDLAYKLFE--EIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPD 369
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFI 356
EITF+G L+AC+H GL+ + F+S+ K G++P+ EHY CMVD LSRAG +TEA I
Sbjct: 370 EITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLI 429
Query: 357 CQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL-VELQPDHD--GRYVGLSNVYAIFK 413
MP++P ++ G+LL+GC H ++ V K L E+ P++ G ++ L+NVYA
Sbjct: 430 ESMPMKPNNAVWGALLSGCRLHKNDEIVSHVAKHLSFEIDPNNQAAGYFMLLANVYAADG 489
Query: 414 RWDEARTTREAMETRGVKKYPGWSFVE 440
RW + T R M GVKK G S++E
Sbjct: 490 RWQDTATVRRNMHDIGVKKPSGRSWIE 516
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 138/312 (44%), Gaps = 17/312 (5%)
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
R LA HAQI +G+ +I N L+ +Y S G + A++VF+ + + WN ++ G
Sbjct: 41 RNLA-KTHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKG 99
Query: 139 YAKCGEMNMARQVFELMP----ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
+ + + ++F+ M E N ++S L+ V+ ++E I + G +N
Sbjct: 100 HTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSN 159
Query: 195 ---EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
L+++ G D R + Y+ D+ + SL+ Y + G A
Sbjct: 160 LYVRTNLINLYANGGDGGDFDLKRAL--YLFDEMPDSNVVGWNSLLAGYVRRGDFDGARK 217
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH- 310
VF E + +V W M+ G A +G K +L LF +M+ G+ D++ + LSACA
Sbjct: 218 VFD--EMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAEL 275
Query: 311 GGLVMEAW---YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
G L + W Y ++ R + ++ + G + AY+ ++P T S
Sbjct: 276 GDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIPQRNTVSW 335
Query: 368 LGSLLTGCMNHG 379
S++TG G
Sbjct: 336 -SSIITGFAKQG 346
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 164/442 (37%), Positives = 255/442 (57%), Gaps = 35/442 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKS-ISLFVKMLRAGV 59
++ F ALS G+IDY+ K+ S + P IF WN++IRG S+S+ P+K + LF KM+R G
Sbjct: 97 IIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGY 156
Query: 60 -SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
+P+ T F+ KA ++ E VHA + K+G+ S F+ +L++ Y
Sbjct: 157 PNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFY---------- 206
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
AKC ++ +A +VF+ + +RN+V+WS +I GY + G E
Sbjct: 207 ---------------------AKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNE 245
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
AL +F +M+ G +EVT+VSV+ ACA GALD G+ + Y+ + + L L T+L++
Sbjct: 246 ALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVN 305
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MYAKCG I+ A VF + D W++MI GLA++G +++LE F M+ + P+
Sbjct: 306 MYAKCGCIERAKEVFDAMP--VKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNH 363
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
+TF+G+LSACAH GLV E ++ S+ + G+VP E Y CMVD L RA V +A +
Sbjct: 364 VTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVET 423
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP+ P + +LL GC LD +E+V ++L+EL+P + Y+ LSN+YA +W++
Sbjct: 424 MPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKM 483
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R+ M+ G+K PG S +E
Sbjct: 484 SQVRKKMKGMGIKAVPGCSSIE 505
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 155/429 (36%), Positives = 240/429 (55%), Gaps = 8/429 (1%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKS-----ISLFVKMLRAGVSPDHLTYPFLAKA 72
++ +S + W+ +I GY++S +K L +M R GV P+ +T+ + +A
Sbjct: 314 EIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRA 373
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
E +HA+++K G+E D + ++ +MY CG I A +VF M K V+W
Sbjct: 374 CTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAW 433
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
S L Y KCG+++ A +VF MP RNVVSW+ +I GY + GD + + M+ G +
Sbjct: 434 TSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQ 493
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ VT++++L AC L L++G+++ + GL + TSLI MY+KCG + EA V
Sbjct: 494 PDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTV 553
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F + D + WNAM+ G HG E+++LF M ++P+EIT ++SAC+ G
Sbjct: 554 FDKMSNR--DTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAG 611
Query: 313 LVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
LV E F+ + + M P+ +HY CMVD L RAG++ EA EFI MP EP S+ +L
Sbjct: 612 LVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHAL 671
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
L C +H + LAE ++EL+P + Y+ LSN+YA RWD++ R M+ RG+K
Sbjct: 672 LGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLK 731
Query: 432 KYPGWSFVE 440
K G S +E
Sbjct: 732 KDRGESSIE 740
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/401 (27%), Positives = 178/401 (44%), Gaps = 56/401 (13%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G I +C+V ++ + W +I+ ++ + N++ L+ +ML+AG+SP+ +T+
Sbjct: 203 SKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFV 262
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
L + +H+ I++ G E+D+ ++N+LI MY C + ARE+FD M +
Sbjct: 263 SLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKR 322
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+SW++M+ GYA+ GY E + E MR
Sbjct: 323 DVISWSAMIAGYAQ--------------------------SGYKDKESIDEVFQLLERMR 356
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G N+VT +S+L AC GAL+QGR + + G L LQT++ +MYAKCG+I
Sbjct: 357 REGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIY 416
Query: 248 EALIVFHGV-----------------------------EKHQSDVLIWNAMIGGLAMHGF 278
EA VF + E +V+ WN MI G A +G
Sbjct: 417 EAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGD 476
Query: 279 VKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYAC 338
+ + EL + M+ G PD +T + +L AC + K G+ +
Sbjct: 477 IVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATS 536
Query: 339 MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
++ S+ GQV EA +M T + ++L G HG
Sbjct: 537 LIGMYSKCGQVAEARTVFDKMSNRDTVA-WNAMLAGYGQHG 576
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 186/395 (47%), Gaps = 50/395 (12%)
Query: 9 YLGN--IDYSCKVLSHLSNPRIFY---------WNTVIRGYSKSKNPNKSISLFVKMLRA 57
YLGN I++ K S ++F W+++I Y+ + +P K+ F +M A
Sbjct: 92 YLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDA 151
Query: 58 GVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYA 117
+ P+ +T+ + KA + E +H + G E+D+ ++ +LI MY
Sbjct: 152 NIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMY--------- 202
Query: 118 REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
+KCGE+++A +VF M ERNVVSW+A+I +
Sbjct: 203 ----------------------SKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLN 240
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
EA ++E+M G N VT VS+L +C AL++GR + ++ ++GL + + +LI
Sbjct: 241 EAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALI 300
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGF-----VKESLELFTEMQIV 292
MY KC +++EA +F + K DV+ W+AMI G A G+ + E +L M+
Sbjct: 301 TMYCKCNSVQEAREIFDRMSKR--DVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRRE 358
Query: 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352
G+ P+++TF+ +L AC G + + L K G + + ++ G + EA
Sbjct: 359 GVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEA 418
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ +M + + S L+ + G L AE V
Sbjct: 419 EQVFSKMANKNVVAWT-SFLSMYIKCGDLSSAEKV 452
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 129/272 (47%), Gaps = 35/272 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + KV S + + WN +I GY+++ + K L M G PD +T +
Sbjct: 444 GDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITIL 503
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+A G LA E VHA+ K G ESD ++ SLI MY CG + AR VFD M + +V
Sbjct: 504 EACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTV 563
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WN+ML GY + G DG EA+ +F+ M
Sbjct: 564 AWNAMLAGYGQHG------------------------DGL-------EAVDLFKRMLKER 592
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT--SLIDMYAKCGAIKE 248
NE+TL +V+ AC+ G + +GR + R M+ + +T Q ++D+ + G ++E
Sbjct: 593 VSPNEITLTAVISACSRAGLVQEGREIFR-MMQEDFKMTPRKQHYGCMVDLLGRAGRLQE 651
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
A + + D+ +W+A++G H V+
Sbjct: 652 AEEFIQSM-PCEPDISVWHALLGACKSHNNVQ 682
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 82/196 (41%), Gaps = 13/196 (6%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G + + V +SN WN ++ GY + + +++ LF +ML+ VSP+ +T
Sbjct: 542 SKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLT 601
Query: 68 FLAKASGRLA----KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+ A R RE+ + T + ++ + G G + A E
Sbjct: 602 AVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHY---GCMVDLLGRAGRLQEAEEFIQS 658
Query: 124 MPTKMSVS-WNSMLDGYAKCGEMNMARQ----VFELMPERNVVSWSALIDGYVKCGDYKE 178
MP + +S W+++L + +A + + EL P V + L + Y + G + +
Sbjct: 659 MPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASV-YITLSNIYAQAGRWDD 717
Query: 179 ALVIFEEMRDVGSKAN 194
+ + M D G K +
Sbjct: 718 STKVRRVMDDRGLKKD 733
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 174/448 (38%), Positives = 251/448 (56%), Gaps = 41/448 (9%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR---- 56
+ +FSALS G+++Y+ +L L P FY+NT+IR YS S +P ++ +LF+ M
Sbjct: 33 LFTFSALSPSGDLNYARHILRTLHTPNSFYYNTMIRAYSDSTDPTRAFTLFLYMQNPDDA 92
Query: 57 --AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114
A PDH TYPF+ KA + +H + K+G SD +I+N+LIH+Y
Sbjct: 93 SVAVPRPDHFTYPFVLKACSKSGHARFGKQIHGLVFKSGVGSDRYINNALIHLY------ 146
Query: 115 VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
SVS GE N+A +VF+ MP+R+VVSW+++IDG+V
Sbjct: 147 --------------SVS-----------GEPNLAYKVFDKMPDRDVVSWTSIIDGFVDND 181
Query: 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT 234
EA+ +F M + G + NEVT+ SVL ACA GAL+ G + ++ +K S + T
Sbjct: 182 RPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNANVST 241
Query: 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
+LIDMYAKCG I AL VF E + DV +W A+I GLA HG +++E F M+ +
Sbjct: 242 ALIDMYAKCGCIDGALEVFD--ETLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDV 299
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
DE +LSA + GLV E FF+ L K + P +HY C+VD L+RAG++ +A E
Sbjct: 300 KMDERAITAVLSAYRNAGLVSEGLLFFRRLKKHKIKPTIQHYGCVVDMLTRAGRLKDAEE 359
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD--HDGRYVGLSNVYAIF 412
FI +MP+EP A + +L+ GC G ++ +E + ++L L D G YV L NVYA
Sbjct: 360 FIRKMPIEPDAVLWRTLIWGCKILGDVERSERLVRELELLNMDSRDTGSYVLLENVYAAT 419
Query: 413 KRWDEARTTREAMETRGVKKYPGWSFVE 440
+W+E TRE M RG+ K P S +E
Sbjct: 420 GKWEEKAKTRELMYQRGLMKPPACSRIE 447
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 161/402 (40%), Positives = 238/402 (59%), Gaps = 7/402 (1%)
Query: 40 KSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
KSK + + + + R G+ + L ++ L + + +VA+ + +F
Sbjct: 39 KSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQN----PSVF 94
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
++IH + GD+V A+++FD MP K VS +ML YAK GE++ AR +F+ M ER+
Sbjct: 95 FWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERD 154
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
V W+ +IDGY + G EALV+F M +K NEVT++SVL AC LGAL+ GR +
Sbjct: 155 GVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHS 214
Query: 220 YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
Y+ + G+ + + T+L+DMY+KCG++++A +VF ++ DV+ WN+MI G AMHGF
Sbjct: 215 YIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKID--DKDVVAWNSMIVGYAMHGFS 272
Query: 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYAC 338
+E+L+LF M +G+ P ITF+G+LSAC H G V E W F + G+ PK EHY C
Sbjct: 273 QEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGC 332
Query: 339 MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398
MV+ L RAG V +AYE + M +EP + G+LL C HGK+ L E + + LV+ +
Sbjct: 333 MVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLAN 392
Query: 399 DGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
G Y+ LSN+YA WD R M+ GVKK PG S +E
Sbjct: 393 SGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIE 434
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 119/248 (47%), Gaps = 33/248 (13%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I GY+++ PN+++ LF +ML+A P+ +T + A G+L E VH+ I
Sbjct: 158 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE 217
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
G + ++ + +L+ MY CG + AR VFD + K V+WNSM+ GYA G
Sbjct: 218 NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHG------- 270
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
F +EAL +F+ M +G +T + +L AC H G
Sbjct: 271 -FS-----------------------QEALQLFKSMCRMGLHPTNITFIGILSACGHSGW 306
Query: 211 LDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
+ +G + M D+ G+ + ++++ + G +++A + + + D ++W +
Sbjct: 307 VTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNI-EPDPVLWGTL 365
Query: 270 IGGLAMHG 277
+G +HG
Sbjct: 366 LGACRLHG 373
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 86/190 (45%), Gaps = 5/190 (2%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+++ + V + + + WN++I GY+ +++ LF M R G+ P ++T+
Sbjct: 236 SKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFI 295
Query: 68 FLAKASGRLAKRELAVAVHAQIA-KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A G + ++ + G E + ++++ G G + A E+ M
Sbjct: 296 GILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNI 355
Query: 127 KMS-VSWNSMLDGYAKCGEMNMARQVFELMPERNVV---SWSALIDGYVKCGDYKEALVI 182
+ V W ++L G++ + ++ EL+ ++N+ ++ L + Y G++ +
Sbjct: 356 EPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARL 415
Query: 183 FEEMRDVGSK 192
M+D G K
Sbjct: 416 RTMMKDSGVK 425
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 161/432 (37%), Positives = 252/432 (58%), Gaps = 4/432 (0%)
Query: 11 GNIDYSCKVLSHLSNPR-IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
G++ S ++ + ++ R + WNT+I G +++ +++ +LF +M R GV D T+ L
Sbjct: 156 GSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSL 215
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+ E+ VH + +G DL + N+L+ MYG CGD+ A FD MP K
Sbjct: 216 LLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNV 275
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSW SML AK G ++ AR FE MPERN++SW+A+I YV+ G + E L ++ M+ +
Sbjct: 276 VSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSL 335
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G +EVTL VL G L GRM+ Y+ D + + SLIDMYA+CG + +
Sbjct: 336 GLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTS 395
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ +F E + + WN +IG LAMHG +E++ F M +PDEITF+GLLSAC+
Sbjct: 396 ISLF--TEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACS 453
Query: 310 HGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
HGGL+ + Y+FK++ + P+ EHYACMVD L R G + +A + I MP++P +
Sbjct: 454 HGGLLEDGQYYFKAMRHIYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVW 513
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+L+ C HG +++ ++ K+L+EL+ + G +V +SN+ ++W++ + R+ M R
Sbjct: 514 GALIGACRIHGHVEIGKLAIKQLLELEGINGGLFVLISNLLYETRQWEDMKRLRKLMRDR 573
Query: 429 GVKKYPGWSFVE 440
G KK G S +E
Sbjct: 574 GTKKDMGVSSIE 585
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 120/423 (28%), Positives = 188/423 (44%), Gaps = 71/423 (16%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
++ + +P F +N++IR YS S P +++ L +LR G+ P+ T PF+ KA R
Sbjct: 62 RMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRAR 121
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM-PTKMSVSWNSML 136
E A+A H K GY +F+ N+L+H S G + +R +F M P + VSWN+M+
Sbjct: 122 AAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMI 181
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
G A+ GE + EA +F EMR G A+
Sbjct: 182 GGCAQAGETS-------------------------------EACALFREMRRQGVLADVF 210
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH-- 254
T VS+L C+ G L+ GR++ +M+ G + L L +L+DMY KCG + A F
Sbjct: 211 TFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVM 270
Query: 255 -------------GVEKHQS--------------DVLIWNAMIGGLAMHGFVKESLELFT 287
+ KH S +++ WNAMI G E+L L+
Sbjct: 271 PIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYN 330
Query: 288 EMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347
M+ +G+TPDE+T G+LS G + + P ++D +R G
Sbjct: 331 RMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCG 390
Query: 348 QVTEAYEFICQMPLEPTAS---MLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRY 402
QV + +MP + T S ++G+L HG+ A + + +V PD + +
Sbjct: 391 QVDTSISLFTEMPNKNTISWNVIIGALAM----HGRAQEAVMFFRAMVSDAFSPD-EITF 445
Query: 403 VGL 405
VGL
Sbjct: 446 VGL 448
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 118/276 (42%), Gaps = 33/276 (11%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
AL+ G++D + + I WN +I Y + +++ L+ +M G++PD +T
Sbjct: 284 ALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVT 343
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ G+ +H I + + + + NSLI MY CG + + +F MP
Sbjct: 344 LAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMP 403
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
K ++SWN ++ A G +EA++ F
Sbjct: 404 NKNTISWNVIIGALAMHGRA-------------------------------QEAVMFFRA 432
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCG 244
M +E+T V +L AC+H G L+ G+ + M + + ++D+ + G
Sbjct: 433 MVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHYACMVDLLGRHG 492
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+ +A+ + + + DV++W A+IG +HG V+
Sbjct: 493 HLAKAVDLIKDMPM-KPDVVVWGALIGACRIHGHVE 527
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 2/250 (0%)
Query: 136 LDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE 195
L G A + AR++F+ +P+ + ++++LI Y G +EAL + ++ G NE
Sbjct: 48 LSGRAGDVALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNE 107
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
TL VL AC+ A + I G + + +L+ A G+++++ +F
Sbjct: 108 FTLPFVLKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAE 167
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
+ H+ +V+ WN MIGG A G E+ LF EM+ G+ D TF+ LL C+ G +
Sbjct: 168 MAPHR-NVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLE 226
Query: 316 EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
+ G +VD + G + A+ MP++ S S+L
Sbjct: 227 VGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWT-SMLCAL 285
Query: 376 MNHGKLDLAE 385
HG +D A
Sbjct: 286 AKHGSVDAAR 295
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/420 (39%), Positives = 244/420 (58%), Gaps = 10/420 (2%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
I WN++I Y ++ K++ +FV+M+ G+ PD +T +A A L+ + +HA
Sbjct: 217 IVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHA 276
Query: 88 QIAK-TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
++ K Y +DL + N+L+ MY C + AR VFD MP + VS SM+ GYAK +
Sbjct: 277 RVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVK 336
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
AR +F M ERNVVSW+ALI GY + G+ +EA+ +F ++ T ++L ACA
Sbjct: 337 AARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACA 396
Query: 207 HLGALDQGRMMLRYMIDKGL------SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
+L L GR +++ G + + SLIDMY KCG +++ +VF + +
Sbjct: 397 NLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERM--LE 454
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
D + WNAMI G A +G+ E+LE+F EM + G PD +T +G+LSAC+H GLV E +
Sbjct: 455 RDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCY 514
Query: 321 FKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
F+S+ + G+VP +HY CMVD L RAG + EA I MP+EP A + GSLL C HG
Sbjct: 515 FQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHG 574
Query: 380 KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
+ L + V ++L+E+ P + G YV LSN+YA RW + R+ M GV K PG S++
Sbjct: 575 NITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWI 634
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 160/316 (50%), Gaps = 16/316 (5%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VHA+I KT + S++FI N L+ +YG CG + AR+VFD M + + SWN++L K G
Sbjct: 41 VHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGA 100
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
++ A +F+ MPER+ SW+A++ G+ + ++EAL +M NE + S L A
Sbjct: 101 LDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSA 160
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
CA L L G + + SL + + ++L+DMY+KC + A F ++ +++
Sbjct: 161 CAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVR--NIV 218
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
WN++I +G ++LE+F M GI PDEIT + SACA + E L
Sbjct: 219 SWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREG------L 272
Query: 325 GKRGMVPKSEHYA-------CMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
V K + Y +VD ++ +V EA +MPL S S+++G
Sbjct: 273 QIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSET-SMVSGYAK 331
Query: 378 HGKLDLAEIVGKKLVE 393
+ A ++ ++E
Sbjct: 332 ASSVKAARLMFSNMME 347
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 138/285 (48%), Gaps = 41/285 (14%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
+ S++ + WN +I GY+++ +++ LF+ + R + P H T+ L A LA
Sbjct: 341 MFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLAD 400
Query: 79 RELAVAVHAQIAKTGY------ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+L H I K G+ +SD+F+ NSLI MY CG + R VF+ M + +VSW
Sbjct: 401 LKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSW 460
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
N+M+ GYA+ +GY EAL IF EM G +
Sbjct: 461 NAMIVGYAQ--------------------------NGY-----GTEALEIFREMLVSGER 489
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ VT++ VL AC+H G +++GR + M I+ GL T ++D+ + G + EA
Sbjct: 490 PDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANN 549
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
+ + + D ++W +++ +HG + +L + +++ I P
Sbjct: 550 LIQTM-PMEPDAVVWGSLLAACKVHGNI--TLGKYVAERLLEIDP 591
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 143/335 (42%), Gaps = 61/335 (18%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
AL+ G +D + + + WN ++ G+++ +++ V M + +
Sbjct: 94 ALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYS 153
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ A L + V +H IAK+ Y D+++ ++L+ MY C + A+ FD M
Sbjct: 154 FGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMD 213
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ VSWNS++ C E N G +AL +F
Sbjct: 214 VRNIVSWNSLI----TCYEQN---------------------------GPAGKALEVFVR 242
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQG-RMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M + G + +E+TL SV ACA L A+ +G ++ R M L L +L+DMYAKC
Sbjct: 243 MMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCR 302
Query: 245 AIKEALIVFH---------------GVEKHQS--------------DVLIWNAMIGGLAM 275
+ EA +VF G K S +V+ WNA+I G
Sbjct: 303 RVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQ 362
Query: 276 HGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+G +E++ LF ++ I P TF LL+ACA+
Sbjct: 363 NGENEEAVRLFLLLKRESIWPTHYTFGNLLNACAN 397
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
+L C ++ + R++ +I S + +Q L+D+Y KCG +++A VF ++ Q
Sbjct: 25 LLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQ--Q 82
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
+ WNA++G L G + E+L LF M D+ ++ ++S A EA F
Sbjct: 83 RNTFSWNAVLGALTKFGALDEALNLFKCMP----ERDQCSWNAMVSGFAQRDRFEEALRF 138
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 172/504 (34%), Positives = 265/504 (52%), Gaps = 69/504 (13%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SALS + + +V + + P + N++IR ++++ P ++ +F +M R G+ D+
Sbjct: 58 ISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADN 117
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG----------- 112
TYPFL KA + + +H I K G SD+++ N+LI Y CG
Sbjct: 118 FTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLF 177
Query: 113 ----------------------DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
++ AR +FD MP + +SWN+MLDGYA+C EM+ A +
Sbjct: 178 EKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFE 237
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM----RDV----------------- 189
+FE MPERN VSWS ++ GY K GD + A V+F++M ++V
Sbjct: 238 LFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLK 297
Query: 190 ------------GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
G K + ++S+L AC G L G + + L + +L+
Sbjct: 298 EADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALL 357
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
DMYAKCG +K+A VF+ + K D++ WN M+ GL +HG KE++ELF+ M+ GI PD
Sbjct: 358 DMYAKCGNLKKAFDVFNDIPK--KDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPD 415
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFI 356
++TF+ +L +C H GL+ E +F S+ K +VP+ EHY C+VD L R G++ EA + +
Sbjct: 416 KVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVV 475
Query: 357 CQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWD 416
MP+EP + G+LL C H ++D+A+ V LV+L P G Y LSN+YA + W+
Sbjct: 476 QTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWE 535
Query: 417 EARTTREAMETRGVKKYPGWSFVE 440
R M++ GV+K G S VE
Sbjct: 536 GVADIRSKMKSMGVEKPSGASSVE 559
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ + C + N+A +VF + E NV ++LI + + +A +F EM+ G A+
Sbjct: 57 LISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFAD 116
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG--AIKEALIV 252
T +L AC+ L +MM ++ GLS + + +LID Y++CG +++A+ +
Sbjct: 117 NFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKL 176
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F + + D + WN+M+GGL G ++++ LF EM D I++ +L A
Sbjct: 177 FEKMS--ERDTVSWNSMLGGLVKAGELRDARRLFDEMP----QRDLISWNTMLDGYARCR 230
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+ +A+ F+ + +R V ++ MV S+AG + A +MPL
Sbjct: 231 EMSKAFELFEKMPERNTV----SWSTMVMGYSKAGDMEMARVMFDKMPL 275
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/431 (38%), Positives = 251/431 (58%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + KV + + WN+++ GY + K + + +F M AGV D +T +
Sbjct: 126 GHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVV 185
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L + +A A+ I + E D+++ N+LI MYG G + AR VFD M + V
Sbjct: 186 LACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLV 245
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+M+ GY K G + AR++F+ M +R+V+SW+ +I Y + G + EAL +F+EM +
Sbjct: 246 SWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESK 305
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K +E+T+ SVL ACAH G+LD G Y+ + + + +LIDMY KCG +++AL
Sbjct: 306 VKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKAL 365
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF E + D + W ++I GLA++GF +L+ F+ M + P F+G+L ACAH
Sbjct: 366 EVFK--EMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAH 423
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV + +F+S+ K G+ P+ +HY C+VD LSR+G + A+EFI +MP+ P +
Sbjct: 424 AGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWR 483
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
LL+ HG + LAEI KKL+EL P + G YV SN YA RW++A RE ME
Sbjct: 484 ILLSASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSN 543
Query: 430 VKKYPGWSFVE 440
V+K G S +E
Sbjct: 544 VQKPSGSSCIE 554
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 125/421 (29%), Positives = 202/421 (47%), Gaps = 68/421 (16%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+ + P + +WN +IRG+S S PN++I ++ M R G+ ++LTY FL KA R+
Sbjct: 32 NLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACARVP 91
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+HA++ K G+ES H+Y S N++++
Sbjct: 92 DVSCGSTIHARVLKLGFES---------HLYVS----------------------NALIN 120
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
Y CG + +A++VF+ MPER++VSW++L+ GY +C ++E L +FE MR G K + VT
Sbjct: 121 MYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVT 180
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+V V+ AC LG M+ Y+ + + + + L +LIDMY + G + A VF ++
Sbjct: 181 MVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQ 240
Query: 258 -----------------------------KHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288
Q DV+ W MI + G E+L LF E
Sbjct: 241 WRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKE 300
Query: 289 MQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYA--CMVDALSRA 346
M + PDEIT +LSACAH G + + K + K++ Y ++D +
Sbjct: 301 MMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDV--KADIYVGNALIDMYCKC 358
Query: 347 GQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA-EIVGKKLVE-LQPDHDGRYVG 404
G V +A E +M + + S S+++G +G D A + + L E +QP H G +VG
Sbjct: 359 GVVEKALEVFKEMRKKDSVSWT-SIISGLAVNGFADSALDYFSRMLREVVQPSH-GAFVG 416
Query: 405 L 405
+
Sbjct: 417 I 417
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 2/165 (1%)
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
A +F+ + + W+ +I G+ EA+ ++ M G N +T + + ACA
Sbjct: 30 AHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACAR 89
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
+ + G + ++ G L + +LI+MY CG + A VF E + D++ WN
Sbjct: 90 VPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFD--EMPERDLVSWN 147
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
+++ G +E L +F M++ G+ D +T + ++ AC G
Sbjct: 148 SLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLG 192
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/452 (36%), Positives = 266/452 (58%), Gaps = 15/452 (3%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSK-------NPNKSISLFVK 53
+L F LS I Y+ K S + +P F WNT+IR + S N +++ F
Sbjct: 53 LLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSH 112
Query: 54 MLRAG-VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG 112
ML G V P+ T+P + KA +LA+ E +H + K G SD F+ ++L+ +Y CG
Sbjct: 113 MLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCG 172
Query: 113 DIVYAREVFDGMPTKMS---VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDG 169
+ A +F T++ V WN M+DGY + G++ +R++F+ MP ++VVSW+ +I G
Sbjct: 173 AMKDAHVLF--YQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISG 230
Query: 170 YVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229
+ G +KEA+ +F +M+ N VTLVSVL A + LGA++ G+ + + + +
Sbjct: 231 CAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEID 290
Query: 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
L ++LIDMY+KCG+I +A+ VF G+ +++ + + W+A+IGGLAMHG +++L+ F M
Sbjct: 291 DVLGSALIDMYSKCGSIDKAVQVFEGI-RNKKNPITWSAIIGGLAMHGRARDALDHFWRM 349
Query: 290 QIVGITPDEITFLGLLSACAHGGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQ 348
Q G+TP ++ ++G+LSAC+H GLV E ++ + G++P+ EHY CMVD L RAG
Sbjct: 350 QQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGC 409
Query: 349 VTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNV 408
+ EA + I MP++P +L +LL C HG +++ E + K L+ P G YV LSN+
Sbjct: 410 LEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNM 469
Query: 409 YAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+A W+ R M+ ++K PG S++E
Sbjct: 470 FASEGNWEGVVKVRLKMKELDIRKDPGCSWIE 501
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 171/434 (39%), Positives = 248/434 (57%), Gaps = 38/434 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + K+ + + WN +I GY+++ N +++ LF M++ V PD T +
Sbjct: 171 GYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 230
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + EL VH+ I G+ S+L I N+LI
Sbjct: 231 SACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALI------------------------- 265
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
D Y+KCGE+ A +FE +P ++V+SW+ LI GY YKEAL++F+EM G
Sbjct: 266 ------DLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 319
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKCGAIK 247
N+VT++S+L ACAHLGA+D GR + Y IDK G++ L+TSLIDMYAKCG I+
Sbjct: 320 ETPNDVTMLSILPACAHLGAIDIGRWIHVY-IDKRLKGVANASSLRTSLIDMYAKCGDIE 378
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VF+ + H+S + WNAMI G AMHG S ++F+ M+ GI PD+ITF+GLLSA
Sbjct: 379 AAHQVFNSI-LHKS-LSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSA 436
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H G++ + F+S+ + M PK EHY CM+D L +G EA E I M +EP
Sbjct: 437 CSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGV 496
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ SLL C HG ++L E + L++++P++ G YV LSN+YA RW+E TR +
Sbjct: 497 IWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLN 556
Query: 427 TRGVKKYPGWSFVE 440
+G+KK PG S +E
Sbjct: 557 DKGMKKVPGCSSIE 570
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/410 (31%), Positives = 230/410 (56%), Gaps = 9/410 (2%)
Query: 1 MLSFSALS-YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
++ F LS + + Y+ V + P + WNT+ RG++ S +P ++ L+V M+ G+
Sbjct: 28 LIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGL 87
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T+PFL K+ + + +H + K G + DL++ SLI MY G + A +
Sbjct: 88 LPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHK 147
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD P + VS+ +++ GYA G + A+++F+ +P ++VVSW+A+I GY + G+YKEA
Sbjct: 148 VFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEA 207
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F++M + +E T+V+V+ ACA G+++ GR + ++ D G L + +LID+
Sbjct: 208 LELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDL 267
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y+KCG ++ A +F G+ DV+ WN +IGG KE+L LF EM G TP+++
Sbjct: 268 YSKCGELETACGLFEGLP--YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 325
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
T L +L ACAH G + + + KR G+ S ++D ++ G + A++
Sbjct: 326 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFN 385
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRYVGL 405
+ L + S +++ G HG+ D + + ++ + ++PD D +VGL
Sbjct: 386 SI-LHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPD-DITFVGL 433
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 128/311 (41%), Gaps = 57/311 (18%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+HAQ+ KTG + + + LI + FDG+P +S
Sbjct: 9 IHAQMIKTGLHNTNYALSKLI-------EFCILSPHFDGLPYAIS--------------- 46
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
VFE + E N++ W+ + G+ D AL ++ M +G N T +L +
Sbjct: 47 ------VFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKS 100
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG--------- 255
CA A +G+ + +++ G L L + TSLI MY + G +++A VF
Sbjct: 101 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSY 160
Query: 256 ------------VEKHQ--------SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
+E Q DV+ WNAMI G A G KE+LELF +M +
Sbjct: 161 TALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 220
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
PDE T + ++SACA G + + G + ++D S+ G++ A
Sbjct: 221 PDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 280
Query: 356 ICQMPLEPTAS 366
+P + S
Sbjct: 281 FEGLPYKDVIS 291
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 159/424 (37%), Positives = 251/424 (59%), Gaps = 3/424 (0%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
KV ++ + W ++ Y +++N +++ F KM +GV D L + A G +
Sbjct: 126 KVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIR 185
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
++H+ + + + +S++LI++Y SC + A ++++GMP K VS +M+
Sbjct: 186 HLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVF 245
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
GYA+ + +AR +F+ MPE++VVSWSA+I GY EAL +F +M++ G + +EVT
Sbjct: 246 GYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVT 305
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
++SV+ ACA+LG+LD+ + + ++ + GL+ L + +LIDM+AKCG I AL +F+ E
Sbjct: 306 MLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFN--E 363
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
Q +V+ W +MI AMHG K +L LF +M+ G+ P+E+TFL LL AC H GLV E
Sbjct: 364 MPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEG 423
Query: 318 WYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
F S+ ++ G+ PK EHY CMVD L RA + EA I M L P + GSLL C
Sbjct: 424 RSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACW 483
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436
HG L L KK+++L P+HDG V LS +Y ++A+ R+ M+ +GV K G
Sbjct: 484 MHGDLKLGAFAAKKILQLDPNHDGASVLLSKIYMKSDNLNDAQEVRDVMKLQGVSKETGL 543
Query: 437 SFVE 440
S+++
Sbjct: 544 SWMD 547
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 140/275 (50%), Gaps = 30/275 (10%)
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
+++ YA CG + AR+VF+ M R+VVSW ++D Y + +YKEAL+ F +M++ G +
Sbjct: 110 ALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLS 169
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+++ L +VL AC H+ L G+ + YM+ + + L ++LI++YA C +++ A ++
Sbjct: 170 DQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKLY 229
Query: 254 HGVEKH-----------------------------QSDVLIWNAMIGGLAMHGFVKESLE 284
+G+ + + DV+ W+AMI G A E+L
Sbjct: 230 NGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALS 289
Query: 285 LFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS 344
LF +MQ GI PDE+T L ++SACA+ G + +A + + G+ ++D +
Sbjct: 290 LFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFA 349
Query: 345 RAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+ G + A +MP + S++T HG
Sbjct: 350 KCGGINLALNIFNEMP-QKNVITWTSMITAFAMHG 383
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 161/507 (31%), Positives = 265/507 (52%), Gaps = 74/507 (14%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A S G+I ++ +V L P+IF WN +IRGYS++ + ++ ++ M A VSPD T
Sbjct: 62 ASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFT 121
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG-- 123
+P L KA L+ ++ VHAQ+ + G+++D+F+ N LI +Y C + AR VF+G
Sbjct: 122 FPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLP 181
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNV-VSWSALID-------------- 168
+P + VSW +++ YA+ GE A ++F M + +V W AL+
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241
Query: 169 ------------------------GYVKCGDYKEALVIFEEMR----------------- 187
Y KCG A ++F++M+
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301
Query: 188 --------------DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
+ + + +++ S + ACA +G+L+Q R M Y+ + +
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS 361
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
++LIDM+AKCG+++ A +VF DV++W+AMI G +HG +E++ L+ M+ G
Sbjct: 362 SALIDMFAKCGSVEGARLVFD--RTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGG 419
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAY 353
+ P+++TFLGLL AC H G+V E W+FF + + P+ +HYAC++D L RAG + +AY
Sbjct: 420 VHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAY 479
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413
E I MP++P ++ G+LL+ C H ++L E ++L + P + G YV LSN+YA +
Sbjct: 480 EVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAAR 539
Query: 414 RWDEARTTREAMETRGVKKYPGWSFVE 440
WD R M+ +G+ K G S+VE
Sbjct: 540 LWDRVAEVRVRMKEKGLNKDVGCSWVE 566
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 160/368 (43%), Gaps = 75/368 (20%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG- 143
+HA++ G + F+ LIH S GDI +AR+VFD +P WN+++ GY++
Sbjct: 40 IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNH 99
Query: 144 ---------EMNMAR-----------------------------QVFELMPERNVVSWSA 165
M +AR QVF L + +V +
Sbjct: 100 FQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNG 159
Query: 166 LIDGYVKC---------------------------------GDYKEALVIFEEMRDVGSK 192
LI Y KC G+ EAL IF +MR + K
Sbjct: 160 LIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVK 219
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ V LVSVL A L L QGR + ++ GL + L SL MYAKCG + A I+
Sbjct: 220 PDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKIL 279
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F ++ ++++WNAMI G A +G+ +E++++F EM + PD I+ +SACA G
Sbjct: 280 FDKMKS--PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
+ +A ++ +G+ + ++D ++ G V E + L+ + +++
Sbjct: 338 SLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV-EGARLVFDRTLDRDVVVWSAMI 396
Query: 373 TGCMNHGK 380
G HG+
Sbjct: 397 VGYGLHGR 404
>gi|449440231|ref|XP_004137888.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
gi|449521725|ref|XP_004167880.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 521
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 179/487 (36%), Positives = 262/487 (53%), Gaps = 50/487 (10%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++FS+LS LG++ ++C + S F NT+IR YS + P K++ ++ +M R V
Sbjct: 37 LIAFSSLSPLGSLPHACALFQETSMDDSFICNTMIRAYSNTVFPLKALLIYNRMQRMDVD 96
Query: 61 PDHLTYPFLAKASGRLAK--------------RELAVAVHAQIAKTGYESDLFISNSLIH 106
DH TY F+ +A R K +HA+I K G++ D + NSL+
Sbjct: 97 SDHFTYNFVLRACARAIKCTEMDDQCFGHHIISRKGSEIHARILKLGFDQDHHVQNSLLL 156
Query: 107 MYGSCGDIVYAREVFD-------------------------------GMPTKMSVSWNSM 135
+Y G + +AR +F+ MP +VSWN++
Sbjct: 157 VYSGSGLVGFARLIFNEMTVKTAVSWNIMMSAYNRVHDYKSADVLLESMPQTNAVSWNTL 216
Query: 136 LDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE 195
L Y + + AR+VFE MPER+VVSW+++I GYV DYK AL +F M+ +A E
Sbjct: 217 LARYIRLNNLVAARKVFEEMPERDVVSWNSIISGYVNVKDYKGALDLFHSMKQWNIRATE 276
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
VT +S+L ACA LGAL+ G+ + + +K + L +++DMYAKCG + AL VF+
Sbjct: 277 VTFISILGACAELGALEIGKKIHDSLKEKHYRIEGYLGNAIVDMYAKCGELGLALEVFNE 336
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV--GITPDEITFLGLLSACAHGGL 313
+E V WNAMI GLA+HG + +LE+F M+ P+ ITF+ LL AC+H GL
Sbjct: 337 ME--MKPVSCWNAMIMGLAVHGHCERALEMFDSMKAEDGDHKPNRITFIALLIACSHKGL 394
Query: 314 VMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
+ E +FF + K ++P +HY CM+D LSR G + EAY I P + + +LL
Sbjct: 395 LAEGRHFFSLMVTKYKIMPDLKHYGCMIDLLSRWGFLEEAYVMIKTCPFSSCSVLWRTLL 454
Query: 373 TGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432
GC H ++L E +KL EL+P DG YV LSN+YA +RWD+ R+ M GV K
Sbjct: 455 GGCRLHRHVELGEESFRKLAELEPGKDGDYVLLSNIYAEEERWDDVERLRKEMINYGVCK 514
Query: 433 YPGWSFV 439
G S V
Sbjct: 515 KAGSSHV 521
>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
Length = 664
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/358 (42%), Positives = 216/358 (60%), Gaps = 4/358 (1%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV-SWNSMLDGYAKCG 143
VHA K G DLF+ N+L+H YG GD+ R VFD +P V +WN +L GY + G
Sbjct: 168 VHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAG 227
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
M +AR+VF+ MP R+ +SWS L+ GYVK + + AL +F M + G + N+ +V+ L
Sbjct: 228 MMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALS 287
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
A A LG L+ G+ + + G+ + + + +L+DMYAKCG + A VF G+ + DV
Sbjct: 288 AAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRR--DV 345
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
WNAMI GLA HG ++++ELF G++P +TF+G+L+ C+ GLV E +FK
Sbjct: 346 FAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKL 405
Query: 324 LGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ ++ + P+ EHY CMVD L RAG V EA E I M + P + G++L+ C HG +D
Sbjct: 406 IVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVD 465
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L VG KL+EL P H G YV LS +YA +WDE R R+ M +RG K GWS +E
Sbjct: 466 LGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLME 523
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 117/277 (42%), Gaps = 35/277 (12%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W+T++ GY K + ++ +F M+ GV P+ A+ RL E VH +
Sbjct: 247 WSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQ 306
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
++G + + +L+ MY CG + AREVFDGM + +WN+M+ G A G + R
Sbjct: 307 RSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHG---LGRD 363
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
EL FE G VT V VL C+ G
Sbjct: 364 AVEL----------------------------FERFISEGLSPTNVTFVGVLNGCSRSGL 395
Query: 211 LDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
+ +GR + +++K + + ++D+ + G + EA+ + G+ D ++W +
Sbjct: 396 VAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHI-APDPVLWGTI 454
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ HG V L + +++ + P + LLS
Sbjct: 455 LSSCKTHGLV--DLGVSVGNKLIELDPTHSGYYVLLS 489
>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 681
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/358 (42%), Positives = 216/358 (60%), Gaps = 4/358 (1%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV-SWNSMLDGYAKCG 143
VHA K G DLF+ N+L+H YG GD+ R VFD +P V +WN +L GY + G
Sbjct: 168 VHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAG 227
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
M +AR+VF+ MP R+ +SWS L+ GYVK + + AL +F M + G + N+ +V+ L
Sbjct: 228 MMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALS 287
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
A A LG L+ G+ + + G+ + + + +L+DMYAKCG + A VF G+ + DV
Sbjct: 288 AAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRR--DV 345
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
WNAMI GLA HG ++++ELF G++P +TF+G+L+ C+ GLV E +FK
Sbjct: 346 FAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKL 405
Query: 324 LGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ ++ + P+ EHY CMVD L RAG V EA E I M + P + G++L+ C HG +D
Sbjct: 406 IVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVD 465
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L VG KL+EL P H G YV LS +YA +WDE R R+ M +RG K GWS +E
Sbjct: 466 LGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLME 523
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 117/277 (42%), Gaps = 35/277 (12%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W+T++ GY K + ++ +F M+ GV P+ A+ RL E VH +
Sbjct: 247 WSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQ 306
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
++G + + +L+ MY CG + AREVFDGM + +WN+M+ G A G + R
Sbjct: 307 RSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHG---LGRD 363
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
EL FE G VT V VL C+ G
Sbjct: 364 AVEL----------------------------FERFISEGLSPTNVTFVGVLNGCSRSGL 395
Query: 211 LDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
+ +GR + +++K + + ++D+ + G + EA+ + G+ D ++W +
Sbjct: 396 VAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHI-APDPVLWGTI 454
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ HG V L + +++ + P + LLS
Sbjct: 455 LSSCKTHGLV--DLGVSVGNKLIELDPTHSGYYVLLS 489
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 158/469 (33%), Positives = 259/469 (55%), Gaps = 37/469 (7%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
+A S +D + ++ + P +F +N +I+G+ +P +S+ +V+MLR VSP
Sbjct: 819 ITACSSFNRLDLAVSFMTQMQKPNVFVYNALIKGFVTCSHPIRSLEFYVRMLRDSVSPSS 878
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
TY L +AS + ++ A I K G+ + I +LI Y + G I AR+VFD
Sbjct: 879 YTYSSLVQASAFASG--FGESLQAHIWKFGFGFHVQIQTTLIGFYSASGRIREARKVFDE 936
Query: 124 MPTKMSVSW-------------------------------NSMLDGYAKCGEMNMARQVF 152
MP + V+W N ++DGY + G + +A +F
Sbjct: 937 MPERDDVTWTTMVSAYRQVLDMDSANSLANQMPEKNEATWNCLIDGYTRLGNLELAESLF 996
Query: 153 ELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD 212
MP ++++SW+ +I+GY + Y+EA+ +F +M + G +EVT+ +V+ ACAHLG L+
Sbjct: 997 NQMPVKDIISWTTMINGYSRNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLE 1056
Query: 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
G+ + Y + G L + + ++L+DMY+KCG+++ AL+VF + K ++ WN++I G
Sbjct: 1057 IGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPK--KNLFCWNSIIEG 1114
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVP 331
LA HGF +E+L++F +M++ + P+ +TF+ + +AC H GLV E ++S+ +V
Sbjct: 1115 LAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHAGLVEEGRRIYRSMIDDYSIVS 1174
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL 391
EHY CMV S+AG + EA E I M EP A + G+LL GC H L++AEI KL
Sbjct: 1175 NVEHYGCMVHLFSKAGLIYEALELIGSMEFEPNAVIWGALLDGCRIHKNLEIAEIAFNKL 1234
Query: 392 VELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY-PGWSFV 439
+ L+P + G Y L ++YA RW + R M G++K PG S +
Sbjct: 1235 MILEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSI 1283
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 107/260 (41%), Gaps = 19/260 (7%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
N + + +++A M + NV ++ALI G+V C +L + M
Sbjct: 816 NQFITACSSFNRLDLAVSFMTQMQKPNVFVYNALIKGFVTCSHPIRSLEFYVRMLRDSVS 875
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ T S++ A A G + ++ G + +QT+LI Y+ G I+EA V
Sbjct: 876 PSSYTYSSLVQASAFASGF--GESLQAHIWKFGFGFHVQIQTTLIGFYSASGRIREARKV 933
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP--DEITFLGLLSACAH 310
F E + D + W M+ ++ L++ + + P +E T+ L+
Sbjct: 934 FD--EMPERDDVTWTTMVSAY------RQVLDMDSANSLANQMPEKNEATWNCLIDGYTR 985
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE---PTASM 367
G + A F + + ++ + M++ SR + EA +M E P
Sbjct: 986 LGNLELAESLFNQMPVKDIIS----WTTMINGYSRNKRYREAIAVFYKMMEEGIIPDEVT 1041
Query: 368 LGSLLTGCMNHGKLDLAEIV 387
+ ++++ C + G L++ + V
Sbjct: 1042 MSTVISACAHLGVLEIGKEV 1061
>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
Length = 651
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/358 (42%), Positives = 216/358 (60%), Gaps = 4/358 (1%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV-SWNSMLDGYAKCG 143
VHA K G DLF+ N+L+H YG GD+ R VFD +P V +WN +L GY + G
Sbjct: 168 VHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAG 227
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
M +AR+VF+ MP R+ +SWS L+ GYVK + + AL +F M + G + N+ +V+ L
Sbjct: 228 MMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALS 287
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
A A LG L+ G+ + + G+ + + + +L+DMYAKCG + A VF G+ + DV
Sbjct: 288 AAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRR--DV 345
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
WNAMI GLA HG ++++ELF G++P +TF+G+L+ C+ GLV E +FK
Sbjct: 346 FAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKL 405
Query: 324 LGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ ++ + P+ EHY CMVD L RAG V EA E I M + P + G++L+ C HG +D
Sbjct: 406 IVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVD 465
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L VG KL+EL P H G YV LS +YA +WDE R R+ M +RG K GWS +E
Sbjct: 466 LGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLME 523
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 117/277 (42%), Gaps = 35/277 (12%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W+T++ GY K + ++ +F M+ GV P+ A+ RL E VH +
Sbjct: 247 WSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQ 306
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
++G + + +L+ MY CG + AREVFDGM + +WN+M+ G A G + R
Sbjct: 307 RSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHG---LGRD 363
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
EL FE G VT V VL C+ G
Sbjct: 364 AVEL----------------------------FERFISEGLSPTNVTFVGVLNGCSRSGL 395
Query: 211 LDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
+ +GR + +++K + + ++D+ + G + EA+ + G+ D ++W +
Sbjct: 396 VAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHI-APDPVLWGTI 454
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ HG V L + +++ + P + LLS
Sbjct: 455 LSSCKTHGLV--DLGVSVGNKLIELDPTHSGYYVLLS 489
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 160/419 (38%), Positives = 246/419 (58%), Gaps = 9/419 (2%)
Query: 25 NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVA 84
P + ++ Y+ S + + S+S+F G+ D+ T+PF+ K+S L +
Sbjct: 102 QPTALVGSKMVAFYASSGDIDSSVSVF-----NGIG-DYFTFPFVLKSSVELLSVWMGKC 155
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VH I + G + DL+++ SLI +YG CG+I A +VFD M + SWN++L GY K G
Sbjct: 156 VHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGC 215
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGSKANEVTLVSVL 202
++ A +FE MP RN+VSW+ +I GY + G ++AL +F+EM D G + N VT++SVL
Sbjct: 216 IDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVL 275
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
ACA L L++GR + GL+ + +L MYAKCG++ +A F + +++ +
Sbjct: 276 PACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKN 335
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
++ WN MI A +G +++ F EM GI PD+ITF GLLS C+H GLV +F
Sbjct: 336 LIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFN 395
Query: 323 SLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
+ + P+ EHYAC+ D L RAG++ EA + + +MP+ S+ GSLL C H L
Sbjct: 396 HMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNL 455
Query: 382 DLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++AE +KL L+P++ G YV LSN+YA RW E R ++++G KK PG S++E
Sbjct: 456 EMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIE 514
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 175/519 (33%), Positives = 266/519 (51%), Gaps = 81/519 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ F S G+I+Y+ VL + NP ++ WN++IRG+ S NP S+ L+ +M+ G S
Sbjct: 42 LIDFCVDSEFGDINYADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYS 101
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PDH T+PF+ KA +A ++ +H+ I K+G+E+D + + L+HMY SC D+ +V
Sbjct: 102 PDHFTFPFVLKACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKV 161
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELM------------------------- 155
FD +P V+W ++ GY K + A +VFE M
Sbjct: 162 FDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDI 221
Query: 156 ---------------------PERNVVSWSALIDGYVKCGDYK----------------- 177
N++ +A+++ Y KCG K
Sbjct: 222 DTGRWVHQRIRKAGYDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSW 281
Query: 178 --------------EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
EAL +F +M G ++ T +SVL CAH AL G+ + Y++
Sbjct: 282 NSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLK 341
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
G++ + L T+L+DMYAK G + A +F ++K DV++W +MI GLAMHG E+L
Sbjct: 342 TGIATDISLATALLDMYAKTGELGNAQKIFSSLQK--KDVVMWTSMINGLAMHGHGNEAL 399
Query: 284 ELFTEMQ-IVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVD 341
+F MQ + PD IT++G+L AC+H GLV EA F+ + + GMVP EHY CMVD
Sbjct: 400 SMFQTMQEDSSLVPDHITYIGVLFACSHVGLVEEAKKHFRLMTEMYGMVPGREHYGCMVD 459
Query: 342 ALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR 401
LSRAG EA + M ++P ++ G+LL GC H + +A V +L EL+P G
Sbjct: 460 LLSRAGHFREAERLMETMTVQPNIAIWGALLNGCQIHENVCVANQVKVRLKELEPCQSGV 519
Query: 402 YVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++ LSN+YA RW+E TR+ M+ + + K G S VE
Sbjct: 520 HILLSNIYAKAGRWEEVNVTRKVMKHKRITKTIGHSSVE 558
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 176/512 (34%), Positives = 264/512 (51%), Gaps = 78/512 (15%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
+A + LG I + +V + P WN + RGY+++ + LF +M RAG SP+
Sbjct: 61 ITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNC 120
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYG-------------- 109
T+P + K+ + VH +AK G++S+ F+ +LIHMY
Sbjct: 121 FTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVF 180
Query: 110 -------------------SCGDIVYAR-------------------------------E 119
+C D+V AR E
Sbjct: 181 AEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARE 240
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
+FD MP + +SWN++L GYA GE+ ++FE MP RNV SW+ LI GYV+ G +KEA
Sbjct: 241 LFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEA 300
Query: 180 LVIFEEM-----------RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL 228
L F+ M D N+ T+V+VL AC+ LG L+ G+ + Y G
Sbjct: 301 LECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKG 360
Query: 229 TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288
L + +LIDMYAKCG I++AL VF G++ D++ WN +I GLAMHG V ++L LF
Sbjct: 361 NLFVGNALIDMYAKCGVIEKALDVFDGLD--VKDIITWNTIINGLAMHGHVADALSLFER 418
Query: 289 MQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAG 347
M+ G PD +TF+G+LSAC H GLV F+S+ +VP+ EHY CMVD L RAG
Sbjct: 419 MKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAG 478
Query: 348 QVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSN 407
+ +A + + +MP+EP A + +LL C + +++AE+ ++L+EL+P++ G +V +SN
Sbjct: 479 LIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNVEMAELALQRLIELEPNNPGNFVMVSN 538
Query: 408 VYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
+Y R + + AM G +K PG S +
Sbjct: 539 IYKDLGRSQDVARLKVAMRDTGFRKVPGCSVI 570
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 79/361 (21%), Positives = 142/361 (39%), Gaps = 64/361 (17%)
Query: 74 GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI--VYAREVFDGMPTKMSVS 131
G+LA + + +H + D FIS L+ G+C + + A+ V G+ V+
Sbjct: 6 GKLAVNQTSKPLHRVV------EDKFIS--LLRTCGTCVRLHQIQAQIVTHGLEGNDYVT 57
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
S + A+ G + AR+VF+ + N +W+A+ GY + + + +V+F M G+
Sbjct: 58 -PSFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGA 116
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA--IKEA 249
N T V+ +CA A +G + + +G + +LI MY+ G + +A
Sbjct: 117 SPNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADA 176
Query: 250 LIVFHGVEKH-----------------------------QSDVLIWNAMIGGLAMHGFVK 280
VF + Q DV++WN ++ G G +
Sbjct: 177 YKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMV 236
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMV 340
+ ELF M D +++ +LS A G V F+ + R + + ++
Sbjct: 237 AARELFDRMP----DRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYS----WNGLI 288
Query: 341 DALSRAGQVTEAYEFICQM--------------PLEPTASMLGSLLTGCMNHGKLDLAEI 386
R G EA E +M + P + ++LT C G L++ +
Sbjct: 289 GGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKW 348
Query: 387 V 387
V
Sbjct: 349 V 349
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 168/433 (38%), Positives = 251/433 (57%), Gaps = 10/433 (2%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
++C + +LS IF +N++IRGY S +P ++I ++ ML G+ ++ T+P L KA
Sbjct: 64 HACLIFQNLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACT 123
Query: 75 RL--AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
L + + + VHA + G++ D F+ ++LI Y D+ AR +FD +P + V W
Sbjct: 124 TLGSSSKLIGCLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLW 183
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
+M+DGY K G++ AR +FE MPERN +SWSA++ Y + GD+KE L +F M++ G+
Sbjct: 184 TAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTM 243
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
NE LVSVL ACAHLGAL QG + Y L T+L+DMY+KCG ++ AL
Sbjct: 244 PNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALST 303
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F G+ D WNAMI G+AM+G +SLELF +M G P E TF+ +L+AC H
Sbjct: 304 FQGIP--NKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHAR 361
Query: 313 LVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTASML 368
LV E F+ + G+ P+ EHYAC+VD ++RAG + EA +FI + A++
Sbjct: 362 LVKEGLKLFEQMSSNYGVEPQLEHYACLVDLMARAGMLAEAEKFIEEKMGGLGRGDANVW 421
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWD-EARTTREAMET 427
G++L C +G +++ V KKL ++ G +V N+Y WD EA+ R +
Sbjct: 422 GAMLGACRTYGNIEVGNRVWKKLADMGVADCGTHVLSYNLYR-EAGWDMEAKRVRRLISE 480
Query: 428 RGVKKYPGWSFVE 440
G+KK PG S +E
Sbjct: 481 AGMKKKPGCSIIE 493
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 126/290 (43%), Gaps = 38/290 (13%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G+++++ + + W+ V+ YS+ + + + LF +M AG P+ +
Sbjct: 193 MGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSV 252
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L + VH+ + ++S+ ++ +L+ MY CG + A F G+P K +
Sbjct: 253 LTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDA 312
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+WN+M+ G A MN GD ++L +F +M
Sbjct: 313 GAWNAMISGVA----MN---------------------------GDAWKSLELFNKMISN 341
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKE 248
G++ E T V+VL AC H + +G + M G+ L L+D+ A+ G + E
Sbjct: 342 GTQPTETTFVAVLTACTHARLVKEGLKLFEQMSSNYGVEPQLEHYACLVDLMARAGMLAE 401
Query: 249 ALIVFHGVEKH----QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
A EK + D +W AM+G +G ++ ++ ++ +G+
Sbjct: 402 AEKFIE--EKMGGLGRGDANVWGAMLGACRTYGNIEVGNRVWKKLADMGV 449
>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 646
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 154/436 (35%), Positives = 257/436 (58%), Gaps = 12/436 (2%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFL 69
GN+ + + + WN ++ GY++ P ++I LF ML G V PD T+ +
Sbjct: 214 GNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTV 273
Query: 70 AKASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT-- 126
+ L L+ ++ ++ T G+ + F+ +L+ M+ CG++ A ++F+ +
Sbjct: 274 ISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYK 333
Query: 127 -KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ SV WN+M+ YA+ G++ AR +F+ MP+R+ VSW+++I GY + G+ +A+ +FEE
Sbjct: 334 YRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEE 393
Query: 186 M-RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M SK +EVT+VSV AC HLG L G + + + + +++ + SLI MY++CG
Sbjct: 394 MISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILKENHIQISISVYNSLISMYSRCG 453
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
++++A+++F E D++ +N +I G A HG ES+EL +M+ GI PD IT++ +
Sbjct: 454 SMQDAVLIFQ--EMATRDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDRITYIAI 511
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
L+AC+H GL+ E F+S+ P +HYACM+D L RAG++ EA + I MP+EP
Sbjct: 512 LTACSHAGLLGEGQRLFESIK----FPDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPH 567
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
A + GSLL H +++L E+ KL +++P + G YV LSN+YA RW + R+
Sbjct: 568 AGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYVLLSNIYASAGRWKDGDKVRDT 627
Query: 425 METRGVKKYPGWSFVE 440
M +GVKK G S++E
Sbjct: 628 MRKQGVKKTTGLSWLE 643
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 160/375 (42%), Gaps = 54/375 (14%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSK-SKNPNKSISLFVKMLR-AGVSPDHLTYPFLAKA 72
Y+C + ++P + + +++ YS+ +SLF MLR + P+ Y + K+
Sbjct: 54 YTCHIFHAATHPDVRVFTFMLKYYSQIGVRAQVPVSLFKHMLRHCNIKPNTSFYSVMMKS 113
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+G + LA + K+GY+ D ++ N ++ +Y
Sbjct: 114 AGSESMLFLA-----HVLKSGYDRDHYVRNGILGIY------------------------ 144
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
AK G + AR++F+ MP+R V W+ +I GY KCG+ +EA +F M D
Sbjct: 145 -------AKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEIS 197
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
N +T +++ A G L RM M ++ ++ +++ YA+ GA +E + +
Sbjct: 198 RNVITWTTMITGHAKKGNLKTARMYFDKMPER----SVVSWNAMLSGYAQGGAPEETIRL 253
Query: 253 FHGVEKH---QSDVLIWNAMIGGLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLSAC 308
F+ + Q D W +I + G S + ++ VG P+ LL
Sbjct: 254 FNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMH 313
Query: 309 AHGGLVMEAWYFFKSLG---KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
A G + A F+ LG R VP + M+ A +R G + A +MP T
Sbjct: 314 AKCGNLEAAHKIFEQLGVYKYRSSVP----WNAMISAYARVGDLPSARHLFDKMPQRDTV 369
Query: 366 SMLGSLLTGCMNHGK 380
S S++ G +G+
Sbjct: 370 S-WNSMIAGYTQNGE 383
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 99/406 (24%), Positives = 166/406 (40%), Gaps = 106/406 (26%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+++ K+ + + + WN +I GY K N ++ +LF M +S + +T+
Sbjct: 148 GPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITW---- 203
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
++I + G++ AR FD MP + V
Sbjct: 204 -------------------------------TTMITGHAKKGNLKTARMYFDKMPERSVV 232
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+ML GYA+ G PE E + +F +M G
Sbjct: 233 SWNAMLSGYAQGGA-----------PE--------------------ETIRLFNDMLSPG 261
Query: 191 S-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKE 248
+ + +E T V+V+ +C+ LG ++R + D G ++T+L+DM+AKCG ++
Sbjct: 262 NVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEA 321
Query: 249 ALIVFH--GVEKHQS------------------------------DVLIWNAMIGGLAMH 276
A +F GV K++S D + WN+MI G +
Sbjct: 322 AHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQN 381
Query: 277 GFVKESLELFTEM-QIVGITPDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKS- 333
G ++++LF EM PDE+T + + SAC H G L + W S+ K + S
Sbjct: 382 GESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAV--SILKENHIQISI 439
Query: 334 EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
Y ++ SR G + +A +M S +L++G HG
Sbjct: 440 SVYNSLISMYSRCGSMQDAVLIFQEMATRDLVS-YNTLISGFAEHG 484
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 128/283 (45%), Gaps = 47/283 (16%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS-PD 62
SA + +G++ + + + WN++I GY+++ K+I LF +M+ + S PD
Sbjct: 344 ISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPD 403
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
+T + A G L + L + + + + + + NSLI MY CG + A +F
Sbjct: 404 EVTMVSVFSACGHLGELGLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQ 463
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
M T+ VS+N+++ G+A+ G E++ +
Sbjct: 464 EMATRDLVSYNTLISGFAEHGHG-------------------------------MESIEL 492
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP---LQTSLIDM 239
+M++ G + + +T +++L AC+H G L +G+ + S+ P +IDM
Sbjct: 493 LLKMKEDGIEPDRITYIAILTACSHAGLLGEGQRLFE-------SIKFPDVDHYACMIDM 545
Query: 240 YAKCGAIKEALIVFHG--VEKHQSDVLIWNAMIGGLAMHGFVK 280
+ G ++EA+ + +E H I+ +++ ++H V+
Sbjct: 546 LGRAGRLEEAMKLIQSMPMEPHAG---IYGSLLNATSIHKQVE 585
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 90/202 (44%), Gaps = 26/202 (12%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S S G++ + + ++ + +NT+I G+++ + +SI L +KM G+ PD
Sbjct: 446 ISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDR 505
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTG---YES----DLFISNSLIHMYGSCGDIVY 116
+TY + L HA + G +ES D+ +I M G G +
Sbjct: 506 ITYIAI-----------LTACSHAGLLGEGQRLFESIKFPDVDHYACMIDMLGRAGRLEE 554
Query: 117 AREVFDGMPTKMSVS-WNSMLDGYA-----KCGEMNMARQVFELMPERNVVSWSALIDGY 170
A ++ MP + + S+L+ + + GE+ A+ +F++ P N ++ L + Y
Sbjct: 555 AMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAK-LFKVEPH-NSGNYVLLSNIY 612
Query: 171 VKCGDYKEALVIFEEMRDVGSK 192
G +K+ + + MR G K
Sbjct: 613 ASAGRWKDGDKVRDTMRKQGVK 634
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 166/430 (38%), Positives = 241/430 (56%), Gaps = 36/430 (8%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+DY+ +V + NP F WNT+IRG +++ P K+ + +M G D+ TY FL K
Sbjct: 1 MDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKV 60
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
G+L L +H + K G E +F+ N+L+HMYG DI
Sbjct: 61 CGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDI------------------ 102
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
A +FE MP+ +V+W+ +ID V CG YKEA+ +F M G K
Sbjct: 103 -------------EAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLK 149
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
++ T V L ACA LG LD GR + + GL + + SLIDMYAKCG ++ A +
Sbjct: 150 PDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEI 209
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI-TPDEITFLGLLSACAHG 311
F+ ++ +++ WN MI GLAMHG E+LELF++M + TP+E+TFLG+L AC+HG
Sbjct: 210 FNKMKGR--NIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLCACSHG 267
Query: 312 GLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
G+V E +F + + + P +HY MVD L RAG V EAY I MP+E + + +
Sbjct: 268 GMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIESNSIVWRT 327
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL C HG L+LAE V ++L+EL+PDH YV L+N+YA +W++ R++M RGV
Sbjct: 328 LLAACRVHGNLELAEQVRQQLLELEPDHSSDYVLLANMYASAGQWNKVVRVRKSMHIRGV 387
Query: 431 KK-YPGWSFV 439
+K PG S++
Sbjct: 388 QKPKPGNSYI 397
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 137/289 (47%), Gaps = 38/289 (13%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
+I+ + + + + WNT+I ++I LF +ML++G+ PD T+
Sbjct: 101 DIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLS 160
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A L + ++ VH+ I TG + + +SNSLI MY CG + A E+F+ M + VS
Sbjct: 161 ACAALGELDIGRRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVS 220
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
WN+M+ G A G + A ++F M E + +
Sbjct: 221 WNTMILGLAMHGHGDEALELFSKMLEEKLAT----------------------------- 251
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
NEVT + VLCAC+H G +++GR M D + T+ S++D+ + G ++EA
Sbjct: 252 -PNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAY 310
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM--QIVGITPD 297
+ + +S+ ++W ++ +HG +LEL ++ Q++ + PD
Sbjct: 311 RLIKSMPI-ESNSIVWRTLLAACRVHG----NLELAEQVRQQLLELEPD 354
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 83/188 (44%), Gaps = 10/188 (5%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV-SPDHLTYPFL 69
G ++ + ++ + + I WNT+I G + + ++++ LF KML + +P+ +T+ +
Sbjct: 201 GVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGV 260
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISN--SLIHMYGSCGDIVYAREVFDGMPTK 127
A E + I + Y I + S++ + G G + A + MP +
Sbjct: 261 LCACSHGGMVEEG-RRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIE 319
Query: 128 M-SVSWNSMLDGYAKCGEMNMARQV----FELMPERNVVSWSALIDGYVKCGDYKEALVI 182
S+ W ++L G + +A QV EL P+ + + L + Y G + + + +
Sbjct: 320 SNSIVWRTLLAACRVHGNLELAEQVRQQLLELEPDHS-SDYVLLANMYASAGQWNKVVRV 378
Query: 183 FEEMRDVG 190
+ M G
Sbjct: 379 RKSMHIRG 386
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 170/436 (38%), Positives = 253/436 (58%), Gaps = 39/436 (8%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A S ++ Y+ + ++ P F +NT+IR ++ S KM AGVSPDH T
Sbjct: 31 AASAPASLSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLF-SKMAMAGVSPDHFT 89
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+PF+ KA RL + + +H+ + K G++SD+++ N LIH YG CG + +A +VF+ MP
Sbjct: 90 FPFVLKACARL---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMP 146
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ VSW+SM+ +AK G GY EAL +F+
Sbjct: 147 ERDLVSWSSMIACFAKNGF------------------------GY-------EALALFQR 175
Query: 186 MRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M+ VG+ K +EV ++SV+ A + LG L+ G+ + ++ GL T+ L T+L+DM+++CG
Sbjct: 176 MQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCG 235
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
I+E++ VF E + +VL W A+I GLA+HG E+L +F EM+ G PD +TF G+
Sbjct: 236 CIEESMRVFD--EMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGV 293
Query: 305 LSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L AC+HGGLV E W+ F+S+ + GM P EHY CMVD L RAG + EA +F+ MP+ P
Sbjct: 294 LVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRP 353
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ + +LL C+NH ++LAE V +K+ EL HDG YV LSNVY RW E R
Sbjct: 354 NSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRN 413
Query: 424 AMETRGVKKYPGWSFV 439
+M + + K PG S +
Sbjct: 414 SMREKRISKKPGCSLI 429
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 164/439 (37%), Positives = 253/439 (57%), Gaps = 5/439 (1%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDH 63
S + L I Y+ + +H +P I +N++I+ +S ++S F M + + PD+
Sbjct: 49 SVCTSLHQIPYATTIFNHTHHPNILLFNSIIKAHSSFPPFHQSFHFFNLMKMTHNILPDN 108
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T+P L KA+ L +L +HA + G+ + L+ +Y +CG + A +VFD
Sbjct: 109 FTFPPLLKATSYLRDYDLGQCLHAHVTALGFYRHSPVEIGLLEVYSNCGKMEDANKVFDE 168
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + V WN M++G+ K G++ + ++F+ M +R+VVSW+ +I + EA IF
Sbjct: 169 MLHREVVVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIF 228
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL-SLTLPLQTSLIDMYAK 242
EM + G + ++ TLV+VL CA LG +D G + Y KGL + + SL+D Y K
Sbjct: 229 REMLEQGFEPDDATLVTVLPVCARLGDVDAGEWIHSYADGKGLLRKVISVGNSLVDFYCK 288
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG ++ A VF+ + K +V+ WNAMI GL ++G + +ELF +M G+TP + TF+
Sbjct: 289 CGNLEAAWKVFNEMTK--KNVVSWNAMISGLGLNGKGELGVELFEKMARKGVTPSDSTFV 346
Query: 303 GLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
G+L+ CAH G V + F S+ K + PK EHY C+VD L R G V EAY+ I MPL
Sbjct: 347 GVLACCAHAGFVDKGREIFDSMTVKFKLSPKLEHYGCVVDLLGRCGHVKEAYDLIRNMPL 406
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
P A++ G+LL+ C HG ++AEI K+LV L+P + G YV LSNVYA ++W+E
Sbjct: 407 MPNAALWGALLSACRTHGDREVAEIAAKELVRLEPGNSGNYVLLSNVYAEERKWNEVEKV 466
Query: 422 REAMETRGVKKYPGWSFVE 440
R M+ G+KK PG S ++
Sbjct: 467 RVLMQGVGIKKNPGQSALQ 485
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 166/431 (38%), Positives = 245/431 (56%), Gaps = 18/431 (4%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D + K+ + WN++I GY + ++++ + +M G+ PD +T +
Sbjct: 128 GDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVV 187
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ +L +L H I + G + + ++N+L+ MY CG++ AR++FD M K V
Sbjct: 188 SSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMV 247
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW +ML F+ MP+++VV W+A+I GYV KEAL +F EM+ +
Sbjct: 248 SWTTML---------------FDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN 292
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+EVT+VS L AC+ LGALD G + Y+ LSL + L T+LIDMYAKCG I +A+
Sbjct: 293 INPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAI 352
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + S L W A+I GLA+HG ++ F+EM + PDE+TFLGLLSAC H
Sbjct: 353 QVFQELPGRNS--LTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCH 410
Query: 311 GGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GGLV E +F + + + PK +HY+CMVD L RAG + EA E I MP+E A + G
Sbjct: 411 GGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWG 470
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+L C HG + + E KL+++ P G YV L+N+Y + W EA R+ M RG
Sbjct: 471 ALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRG 530
Query: 430 VKKYPGWSFVE 440
V+K PG S +E
Sbjct: 531 VEKTPGCSSIE 541
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 200/375 (53%), Gaps = 46/375 (12%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GV 59
+++F A+S ++DY +L + NP F WN IRG+ S+NP +++ L+ ++L+ G
Sbjct: 16 LIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGT 75
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
PD+ TYP L KA RL+ + + + G++SD+F+SN++IH+ SCGD
Sbjct: 76 KPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGD------ 129
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
LDG AR++F+ R++VSW+++I+GYV+ G EA
Sbjct: 130 ----------------LDG---------ARKMFDKSCVRDLVSWNSMINGYVRRGWAYEA 164
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L + EM+ G K +EVT++ V+ +CA L LD GR Y+ + GL LT+PL +L+DM
Sbjct: 165 LNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDM 224
Query: 240 YAKCGAIKEALIVFHGV--------------EKHQSDVLIWNAMIGGLAMHGFVKESLEL 285
Y KCG ++ A +F + E DV+ WNAMIGG KE+L L
Sbjct: 225 YMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALAL 284
Query: 286 FTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSR 345
F EMQ + I PDE+T + LSAC+ G + + + K + ++D ++
Sbjct: 285 FNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAK 344
Query: 346 AGQVTEAYEFICQMP 360
G++T+A + ++P
Sbjct: 345 CGKITKAIQVFQELP 359
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 124/279 (44%), Gaps = 37/279 (13%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
F +++ + ++ + + + + WN +I GY + ++++LF +M ++PD
Sbjct: 238 FDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDE 297
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T A +L ++ + +H I K ++ + +LI MY CG I A +VF
Sbjct: 298 VTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQE 357
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+P + S++W +A+I G G+ A+ F
Sbjct: 358 LPGRNSLTW-------------------------------TAIISGLALHGNAHGAIAYF 386
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAK 242
EM D +EVT + +L AC H G +++GR M K LS L + ++D+ +
Sbjct: 387 SEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGR 446
Query: 243 CGAIKEA--LIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
G ++EA LI +E +D ++W A+ +HG V
Sbjct: 447 AGLLEEAEELIKSMPIE---ADAVVWGALFFACRIHGNV 482
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 165/448 (36%), Positives = 258/448 (57%), Gaps = 45/448 (10%)
Query: 5 SALSYLGNIDYSCKVL---SHLSNPRI-----FYWNTVIRGYSKSKNPNKSISLFVK-ML 55
S S L +I Y+ L SH ++ F +NT+IR YS++++ + LF + ML
Sbjct: 58 STSSNLNSIHYATSFLFPPSHTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTML 117
Query: 56 RAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD-- 113
R GV+P+ T+PF+ K + L VH + K G+E D+ + N+LIHMY G+
Sbjct: 118 RYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDG 177
Query: 114 IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKC 173
+A +VFD P +V+W++M I G+V+
Sbjct: 178 FEFAEKVFDDSPKMDTVTWSAM-------------------------------IAGFVRL 206
Query: 174 GDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
G A+ +F EM+ +G +E+T+VSVL ACA LGAL+ G+ + Y+ K + ++ L
Sbjct: 207 GCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELC 266
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
+LIDM+AKCG + +A+ +F ++ ++ W ++I GLAMHG +++ LF EM G
Sbjct: 267 NALIDMFAKCGNVDKAIKLFRQMDSRT--IVSWTSVIAGLAMHGRGLDAVSLFDEMVENG 324
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEA 352
ITPD++ F+G+LSAC+H GLV + Y+F S+ + +VPK EHY CMVD L R G V EA
Sbjct: 325 ITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEA 384
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412
+EF+ +MP EP + +++T C G+L L E + K+L++ +P H+ YV LSN+YA
Sbjct: 385 FEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKL 444
Query: 413 KRWDEARTTREAMETRGVKKYPGWSFVE 440
++W++ RE M+ RG+KK PG + +E
Sbjct: 445 RQWEKKTKVREMMDMRGMKKVPGSTMIE 472
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 174/506 (34%), Positives = 267/506 (52%), Gaps = 73/506 (14%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SALS + + +V + + P + N++IR ++ + P ++ +F +M R G+ D+
Sbjct: 58 ISALSLCRQTNLALRVFNQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADN 117
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG----------- 112
TYPFL KA L+ + +H I K G SD+++ N+LI Y CG
Sbjct: 118 FTYPFLLKACSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLF 177
Query: 113 ----------------------DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
++ AR++FD MP + +SWN+MLDGYA+C EM+ A +
Sbjct: 178 EKMSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQRDLISWNTMLDGYARCREMSRAFE 237
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+FE MPERN VSWS ++ GY K GD + A V+F++M N VT ++ A G
Sbjct: 238 LFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKM--PFPAKNVVTWTIIIAGYAEKGL 295
Query: 211 LDQGRMMLRYMIDKGLS------------------LTLPLQ-----------------TS 235
L + ++ M+ GL L+L ++ +
Sbjct: 296 LKEADKLVDQMVASGLRFDAAAAISILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNA 355
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
L+DMYAKCG++K+A VF+ + K D++ WN M+ GL +HG KE++ELF+ M+ GI
Sbjct: 356 LLDMYAKCGSLKKAFDVFNDMPK--KDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIW 413
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYE 354
PD++TF+ +L +C H GL+ E +F S+ K +VPK EHY C+VD L R G++ EA +
Sbjct: 414 PDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIK 473
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414
+ MP+EP + G+LL C H ++D+A+ V LV+L P G Y LSN+YA +
Sbjct: 474 VVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPSDPGNYTLLSNIYAAAED 533
Query: 415 WDEARTTREAMETRGVKKYPGWSFVE 440
W+ R M++ GV+K G S VE
Sbjct: 534 WEGVADIRSKMKSMGVEKPSGASSVE 559
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 12/229 (5%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ + C + N+A +VF + E NV ++LI + +A +F EM+ G A+
Sbjct: 57 LISALSLCRQTNLALRVFNQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFAD 116
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG--AIKEALIV 252
T +L AC+ L L +MM ++ GLS + + +LID Y++CG +++A+ +
Sbjct: 117 NFTYPFLLKACSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKL 176
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F + + D + WN+M+GGL G ++++ +LF EM D I++ +L A
Sbjct: 177 FEKMS--ERDTVSWNSMLGGLVKAGELRDARKLFDEMP----QRDLISWNTMLDGYARCR 230
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+ A+ F+ + +R V ++ MV S+AG + A +MP
Sbjct: 231 EMSRAFELFEKMPERNTV----SWSTMVMGYSKAGDMEMARVMFDKMPF 275
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 170/423 (40%), Positives = 243/423 (57%), Gaps = 9/423 (2%)
Query: 25 NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG----VSPDHLTYPFLAKASGRLAKRE 80
+P I WN +IR YSK +N + I LF++ML V PD T+ F+ +
Sbjct: 136 SPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLI 195
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
VH + K+G+ES+L++ NS+I+M + AR+VF+ M + SW S+L GYA
Sbjct: 196 YGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYA 255
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DVGSKANEVTLV 199
K GEM+ A ++F +MP RN VSW+ +I G++ CG Y EAL F M D NE LV
Sbjct: 256 KHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLV 315
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
VL ACAHLGALDQG + Y+ G+ + + T+LIDMYAKCG I A VF+G+ K
Sbjct: 316 CVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKR 375
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
DVL + +MI GL+ HG K++L +F +M + P+EIT LG+L+ C+H GLV E
Sbjct: 376 --DVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSS 433
Query: 320 FFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNH 378
++ G+ PK EHY C +D L RAG + A E + MP+EP + +LL+ H
Sbjct: 434 ILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIH 493
Query: 379 GKLDLAEIVGKKLVELQ-PDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
++L E + + +L+ DH+G V LSN+YA RW+ R+ M R + PG S
Sbjct: 494 HNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCS 553
Query: 438 FVE 440
++E
Sbjct: 554 WIE 556
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/370 (20%), Positives = 146/370 (39%), Gaps = 74/370 (20%)
Query: 41 SKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFI 100
S N SIS+ + + P+ T+ L +L+ + +HAQ+ S+ +
Sbjct: 53 SSNTFPSISIPTNPIPIDL-PNPQTFSLLLNQRPKLSPLQ---QIHAQVVTQALSSNASL 108
Query: 101 SNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNV 160
+ SLIH Y + AR +FD P+ P +
Sbjct: 109 TASLIHCYLCAKNHPNARILFDHYPS-----------------------------PSPPI 139
Query: 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSK----ANEVTLVSVLCACAHLGALDQGRM 216
W+ +I Y K + +E + +F M + +E T V+ +C+H +L G +
Sbjct: 140 KLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIYGEI 199
Query: 217 MLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ ++ G L + S+I+M + +++A VF+ + + DV W +++GG A H
Sbjct: 200 VHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFN--QMSERDVFSWTSLLGGYAKH 257
Query: 277 GFVKESLELFTEMQIVG--------------------------------ITPDEITFLGL 304
G + + ELF M + + P+E + +
Sbjct: 258 GEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCV 317
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQV---TEAYEFICQMPL 361
LSACAH G + + + + K G+ S ++D ++ G++ + + IC+ +
Sbjct: 318 LSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDV 377
Query: 362 EPTASMLGSL 371
SM+ L
Sbjct: 378 LSFTSMISGL 387
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 143/363 (39%), Gaps = 80/363 (22%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM---------------LRAGVSPD 62
KV + +S +F W +++ GY+K +++ LF M L G P+
Sbjct: 234 KVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPE 293
Query: 63 HLTYPFLAKASGRLAKRELAVA-----------------VHAQIAKTGYESDLFISNSLI 105
LT+ R+ E + +H I K G IS +LI
Sbjct: 294 ALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALI 353
Query: 106 HMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSA 165
MY CG I A VF+G+ + +S+ SM+ G +
Sbjct: 354 DMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLS------------------------- 388
Query: 166 LIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK- 224
Y G K+AL +F +M D NE+T++ VL C+H G +++G +L M
Sbjct: 389 ----YHGLG--KDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLW 442
Query: 225 GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLE 284
G++ + ID+ + G ++ AL V + + D++IW A++ +H V +
Sbjct: 443 GIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPM-EPDIVIWRALLSASRIHHNVNLGEQ 501
Query: 285 LFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS 344
+ I+ +G L + H G + + SLG+ V +E MVD S
Sbjct: 502 I-------------ISHIGQLKSSDHNGGEVLLSNLYASLGRWERV--TEMRKLMVDRRS 546
Query: 345 RAG 347
+
Sbjct: 547 ESS 549
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 162/441 (36%), Positives = 251/441 (56%), Gaps = 5/441 (1%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L F A + G++ S + +++ + WNT+I GY+++ +++ +LF +M G+
Sbjct: 155 LLHFHASA--GSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLL 212
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
D T L A E+ VH + +G D + N+L+ MYG CGD+ A
Sbjct: 213 ADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRC 272
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD MP K V+W SML AK G ++ R FE MPERN+VSW+A+I YV+CG E L
Sbjct: 273 FDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETL 332
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
++ MR +G +E TL VL AC G L G+M+ Y+ D + L SL+DMY
Sbjct: 333 DLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMY 392
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
A+CG + A+ +F E +V+ WN +IG LAMHG +E++ F M +PDEIT
Sbjct: 393 ARCGQVDTAIGLF--TEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEIT 450
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+GLLSAC+HGGL+ Y+F+++ + + P+ EHY CMVD L R G + +A I M
Sbjct: 451 FVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDM 510
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
++P + G+LL C HG +++ ++V K+L+EL+ G +V + N++ +W++ +
Sbjct: 511 SIKPDVVVWGALLGACRIHGNVEIGKLVIKQLLELEGITGGLFVLICNLFYETNQWEDMK 570
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R+ M+ +G KK G S +E
Sbjct: 571 KLRKLMKEQGTKKDMGVSSIE 591
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/387 (28%), Positives = 178/387 (45%), Gaps = 60/387 (15%)
Query: 3 SFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD 62
+ SA G + ++ ++ + P F +NT++R YS S P +++ L +L+ G+ P+
Sbjct: 54 TLSAGDRDGGLCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPN 113
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
T PF+ KA + E A+A H + K G+ +F++N+L+H + S G + +R F
Sbjct: 114 EFTLPFVLKACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFG 173
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
M + VSWN+M+ GYA+ GE++ EA +
Sbjct: 174 EMADRNVVSWNTMIGGYAQAGEVS-------------------------------EACAL 202
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F EMR G A+ TLVS+L AC+ G L+ GR++ +M+ G + L +L+DMY K
Sbjct: 203 FGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGK 262
Query: 243 CGAIKEALIVF--------------------HGV---------EKHQSDVLIWNAMIGGL 273
CG + A F HG + + +++ WNAMI
Sbjct: 263 CGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCY 322
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS 333
G + E+L+L+ M+ +GITPDE T G+LSAC G + + P
Sbjct: 323 VQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPGV 382
Query: 334 EHYACMVDALSRAGQVTEAYEFICQMP 360
++D +R GQV A +MP
Sbjct: 383 TLLNSLLDMYARCGQVDTAIGLFTEMP 409
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 171/448 (38%), Positives = 246/448 (54%), Gaps = 67/448 (14%)
Query: 54 MLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113
M+R V+P+H T+P L K + +HA+I K G+E DLF+ NSLIHMY CG
Sbjct: 1 MVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGR 60
Query: 114 IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN-------------- 159
I AR +F+ V+WNSM+DGY K GE+ AR++FE MPER+
Sbjct: 61 IGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGN 120
Query: 160 -----------------VVSWSALIDG-------------------------------YV 171
+VSW+ +IDG YV
Sbjct: 121 GDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYV 180
Query: 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTL 230
+ DY E L +F++M + NE TLVSVL ACAHLG LD+G+ + Y+ ++ + +
Sbjct: 181 RIKDYDECLRMFDKMMG-ETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDV 239
Query: 231 PLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ 290
L T+L+ MYAKCGA+ A VF + V+ WN+MI G MHG ++LE+F +M+
Sbjct: 240 LLSTALLTMYAKCGAMDLARDVFDKMSNRS--VVSWNSMIMGYGMHGQADKALEMFLDME 297
Query: 291 IVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQV 349
G P++ TF+ +LSACAH G+++E W++F + + + PK EHY CMVD L RAG +
Sbjct: 298 KRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLM 357
Query: 350 TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409
+ E I +MP+E ++ G+LL+ C H +LAEIV K+L+EL+P G Y+ LSN+Y
Sbjct: 358 KDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIY 417
Query: 410 AIFKRWDEARTTREAMETRGVKKYPGWS 437
A +WD+ R+ M+ RG+ K G S
Sbjct: 418 AAEGKWDDVEIVRKMMKERGLTKTTGLS 445
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 33/204 (16%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
N++ +C++ + + + WN ++ Y + K+ ++ + +F KM+ P+ T +
Sbjct: 153 NMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMM-GETMPNEATLVSVLT 211
Query: 72 ASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L + + +H+ I E D+ +S +L+ MY CG + AR+VFD M + V
Sbjct: 212 ACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVV 271
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNSM+ GY G+ + +AL +F +M G
Sbjct: 272 SWNSMIMGYGMHGQAD-------------------------------KALEMFLDMEKRG 300
Query: 191 SKANEVTLVSVLCACAHLGALDQG 214
N+ T + VL ACAH G + +G
Sbjct: 301 PMPNDATFICVLSACAHSGMILEG 324
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 87/188 (46%), Gaps = 11/188 (5%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + V +SN + WN++I GY +K++ +F+ M + G P+ T+ +
Sbjct: 253 GAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVL 312
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISN--SLIHMYGSCGDIVYAREVFDGMPTKM 128
A + L + + + Y+ + + + ++ + G G + E+ MP +
Sbjct: 313 SACAH-SGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEG 371
Query: 129 SVS-WNSMLDG-----YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ W ++L ++ E+ +A+++ EL P R++ + L + Y G + + ++
Sbjct: 372 GTALWGALLSACRTHSNSELAEI-VAKRLIELEP-RDIGPYLLLSNIYAAEGKWDDVEIV 429
Query: 183 FEEMRDVG 190
+ M++ G
Sbjct: 430 RKMMKERG 437
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 165/432 (38%), Positives = 248/432 (57%), Gaps = 5/432 (1%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFLA 70
++ ++ + + + + W T++ GY++ +++ +F +M+ AG + P+ +T +
Sbjct: 191 SLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVV 250
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G++ V+ +A G + + N+LI M+G G AREVFD M K
Sbjct: 251 SAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVY 310
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW +M++ YAKCG++ A ++F+ MP RN VSWS +I Y + +EA+ +F+ M + G
Sbjct: 311 SWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEG 370
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMML-RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ LVSVL ACA LG LD GR + Y+I LT+ L + ID+YAKCG A
Sbjct: 371 VEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAA 430
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+F E + +V+ WN+MI A+HG +E L LF +++ I PDEITFLGLLSAC+
Sbjct: 431 SKLF--AEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACS 488
Query: 310 HGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E +FK + G+ PKSEHYACM+D L + G + EA+E MP+E +
Sbjct: 489 HSGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGW 548
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C +G +++ E KLV+L P G YV +S +YA +WD+ + R M R
Sbjct: 549 GALLNACRMYGNVEIGEFAADKLVQLNPLDSGIYVLMSQIYASKNKWDQVKILRVLMRER 608
Query: 429 GVKKYPGWSFVE 440
GVKK PG S +E
Sbjct: 609 GVKKNPGCSSIE 620
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 177/390 (45%), Gaps = 78/390 (20%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+F ALS +D++ +L+ S P + T++R + +++ P+++ +LF +++R +
Sbjct: 75 LLAFCALSTPPRVDHAAAILARASAPNAYMLATMMRAFLRARLPSRASALFRRVIRESLP 134
Query: 61 PDHLTYPFLAKASGRLAKRELAVA---VHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVY 116
D T F KA+ + VH K G+ + + N+L+H Y + + +
Sbjct: 135 ADARTLVFAIKAAASEHEHHSPSGGEGVHCVALKWGHVAQSVLVGNALVHFYANHRSLAH 194
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
AR +FD MP + VSW +++DGYA+ G + A +VF M ++ G
Sbjct: 195 ARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRM----------VVAG------- 237
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
G + NEVTLV+V+ A +G L GRM+ RY+ D G+ ++ L+ +L
Sbjct: 238 -------------GLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENAL 284
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
IDM+ K G A VF + DV W M+ A G ++ + LF +M
Sbjct: 285 IDMFGKFGCAASAREVFDSMA--VKDVYSWTTMVNAYAKCGDLESAARLFDDMP------ 336
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA---Y 353
+R V ++CM+ A S+A Q EA +
Sbjct: 337 -----------------------------RRNAVS----WSCMIAAYSQANQPEEAVRLF 363
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+ + + +EP + L S+L+ C G LDL
Sbjct: 364 KAMIEEGVEPINAGLVSVLSACAQLGCLDL 393
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 162/431 (37%), Positives = 247/431 (57%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ S + + + + WN++I GY+++ N ++ SLF M R G+ D T L
Sbjct: 159 GSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLL 218
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A E VH+ + G DL ++N+L+ MYG CGD++ A FD MP K +V
Sbjct: 219 FACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAV 278
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW SML AK ++ AR FE +PE++++SW+A+I YV+ G + EAL ++ M+ +G
Sbjct: 279 SWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLG 338
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+E TL +VL AC LG L G+M+ + D + + L SL+DMYA+CG + A+
Sbjct: 339 LAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAI 398
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F E +V+ WNA+IG LAMHG +++L F M PDEITF+ LLSAC H
Sbjct: 399 SLFS--EMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNH 456
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GGL+ Y+F+++ + P EHYACMVD L R GQ+ +A + I MP+ P + G
Sbjct: 457 GGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWG 516
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C HG + + + V K+L+EL+ G +V +SN+ +W++ + R+ M G
Sbjct: 517 ALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWG 576
Query: 430 VKKYPGWSFVE 440
+KK G S +E
Sbjct: 577 MKKNMGVSSIE 587
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 111/389 (28%), Positives = 182/389 (46%), Gaps = 60/389 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+ S+ AL G + Y+ ++ + +P F +N++IR Y S P +++ L M+R G+
Sbjct: 48 LASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGIL 107
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ T PFL KA R+ E + H + K G+ +F+ N+L+H
Sbjct: 108 PNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLH-------------- 153
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
YA G + +R+ F+ M +RNVVSW+++I+GY + G+ +EA
Sbjct: 154 -----------------SYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREAC 196
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+FE MR G A+E TLVS+L AC+ G L+ G+++ +++ +G + L L +L+DMY
Sbjct: 197 SLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMY 256
Query: 241 AKCGAIKEALIVFH---------------GVEKHQS--------------DVLIWNAMIG 271
KCG + A F + K S ++ WNAMI
Sbjct: 257 GKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMIS 316
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
G E+L+L+ M+++G+ PDE T +LSAC G + + P
Sbjct: 317 CYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNP 376
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMP 360
+ ++D +R GQV A +MP
Sbjct: 377 GVALFNSLLDMYARCGQVDTAISLFSEMP 405
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 123/289 (42%), Gaps = 41/289 (14%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
AL+ +ID + + I WN +I Y + ++++ L+ +M G++PD T
Sbjct: 286 ALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFT 345
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ A G+L +H I + + + NSL+ MY CG + A +F MP
Sbjct: 346 LAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMP 405
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+K +SWN A+I G ++AL+ F
Sbjct: 406 SKNVISWN-------------------------------AIIGALAMHGRAQDALMFFRS 434
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR-----YMIDKGLSLTLPLQTSLIDMY 240
M +E+T V++L AC H G L+ G+ + Y + G+ ++D+
Sbjct: 435 MVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHY----ACMVDLL 490
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
+ G + +A+ + + + DV++W A++G +HG ++ ++ ++
Sbjct: 491 GRGGQLAKAVDLIKDMPM-RPDVVVWGALLGACRIHGHIQIGKQVIKQL 538
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 180/503 (35%), Positives = 254/503 (50%), Gaps = 68/503 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLF---VKMLRAGVSP 61
++ S N+ + V + + +P + +N +IR YS S N + S+ F +KM GV
Sbjct: 62 ASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGVLA 121
Query: 62 DHLTYPFLAKA-SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
D+ TYPFL K +G + L VHA + K G+ D+F+ NSLI Y CGD+ A +V
Sbjct: 122 DNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAMKV 181
Query: 121 FDGM-------------------------------PTKMSVSWNSMLDGYAKCGEMNMAR 149
F GM P + VSWN+MLDG+ K GEM+ A
Sbjct: 182 FSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGEMDKAF 241
Query: 150 QVFELMPERNVVSWSALIDGYVKCGD-------------------------------YKE 178
++FE M ER++VSWS ++ GY K GD KE
Sbjct: 242 KLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKE 301
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
A+ + +EM G + ++ +S+L ACA G L G+ M + + + S ID
Sbjct: 302 AMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFID 361
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MYAKCG + +A VF+G+ K + D++ WN+MI G +HG ++S+ELF M G PD
Sbjct: 362 MYAKCGCVDDAFRVFNGM-KTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDR 420
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
TF+GLL AC H GLV E +F S+ + G+VP+ EHY CMVD L R G + EA+ +
Sbjct: 421 YTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVR 480
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
MP EP A +LG+LL C H + LA V K L +L P G + LSN+YA W
Sbjct: 481 SMPFEPNAIILGTLLGACRMHNDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGDWIN 540
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
R+ M G +K G S +E
Sbjct: 541 VAKVRKQMNDEGGQKPSGVSSIE 563
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 112/232 (48%), Gaps = 14/232 (6%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE---EMRDVGS 191
++ Y+ ++ A VF +P+ NV ++ LI Y G+ +L F +M G
Sbjct: 60 LIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGV 119
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEAL 250
A+ T +L C + M+ ++K G + + SLID Y +CG ++ A+
Sbjct: 120 LADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAM 179
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF G+E + DV+ WN+M+GGL +G + +L++F EM D +++ +L
Sbjct: 180 KVFSGME--ERDVVSWNSMVGGLVKNGDLDGALKVFDEMP----ERDRVSWNTMLDGFTK 233
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
G + +A+ F+ + +R +V ++ MV S+ G + A + P++
Sbjct: 234 AGEMDKAFKLFERMAERDIVS----WSTMVCGYSKNGDMDMARMLFDRCPVK 281
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 160/437 (36%), Positives = 262/437 (59%), Gaps = 17/437 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I +S + +P +F + I S + +++ L+V++L + ++P+ T+ +
Sbjct: 76 GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSIL 135
Query: 71 KA----SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
K+ SG+L +H + K G D +++ L+ +Y GD+V A++VFD MP
Sbjct: 136 KSCSTKSGKL--------IHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPE 187
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE- 185
+ VS +M+ YAK G + AR +F+ M ER++VSW+ +IDGY + G +AL++F++
Sbjct: 188 RSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKL 247
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
+ D K +E+T+V+ L AC+ +GAL+ GR + ++ + L + + T+LIDMY+KCG+
Sbjct: 248 LADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGS 307
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ-IVGITPDEITFLGL 304
++EA++VF+ + D++ WNAMI G AMHG+ +++L LF EMQ I G+ P +ITF+G
Sbjct: 308 LEEAVLVFNDTPR--KDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGT 365
Query: 305 LSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L ACAH GLV E F+S+G+ G+ PK EHY C+V L RAGQ+ AYE I M +E
Sbjct: 366 LQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEA 425
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ + S+L C HG+ L + + + L+ + G YV LSN+YA+ ++ R
Sbjct: 426 DSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRN 485
Query: 424 AMETRGVKKYPGWSFVE 440
M+ +G+ K PG S +E
Sbjct: 486 LMKEKGIVKEPGISTIE 502
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 116/272 (42%), Gaps = 35/272 (12%)
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
YA G++ + +F + ++ ++A I+ G +A +++ ++ NE T
Sbjct: 71 AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFT 130
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
S+L +C + G+++ +++ GL L + T L+D+YAK G + A VF +
Sbjct: 131 FSSILKSC----STKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMP 186
Query: 258 KH-----------------------------QSDVLIWNAMIGGLAMHGFVKESLELFTE 288
+ + D++ WN MI G + HGF ++L LF +
Sbjct: 187 ERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQK 246
Query: 289 MQIVG-ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347
+ G PDEIT + LSAC+ G + + + + + ++D S+ G
Sbjct: 247 LLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCG 306
Query: 348 QVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+ EA P + + +++TG HG
Sbjct: 307 SLEEAVLVFNDTPRKDIVAW-NAMITGYAMHG 337
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 80/189 (42%), Gaps = 6/189 (3%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTY 66
S G+++ + V + I WN +I GY+ ++ LF +M G+ P +T+
Sbjct: 303 SKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITF 362
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+A + + + + G + + L+ + G G + A E+ M
Sbjct: 363 IGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMN 422
Query: 126 TKM-SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVS---WSALIDGYVKCGDYKEALV 181
+ SV W+S+L GE + +++ E + +N+ + + L + Y GDY+
Sbjct: 423 MEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAK 482
Query: 182 IFEEMRDVG 190
+ M++ G
Sbjct: 483 VRNLMKEKG 491
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 2000
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 161/412 (39%), Positives = 239/412 (58%), Gaps = 4/412 (0%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W+ +I Y +S P +S+ LF +M++ G P+ + + A + + + +H +
Sbjct: 284 WSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVT 343
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G+E D+F+S+SLI MY CG+ R +FD + K VSWN+M+ GY+ G M A+
Sbjct: 344 KIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKY 403
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F +MP RN VSWSA+I G++ C + E +F EM +G N+ T S+LCACA +
Sbjct: 404 LFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTAS 463
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
LD+G+ + ++ G+ + T+L DMYAK G I+ + VF+ + K + W AMI
Sbjct: 464 LDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNE--VSWTAMI 521
Query: 271 GGLAMHGFVKESLELFTEMQ-IVGITPDEITFLGLLSACAHGGLVMEA-WYFFKSLGKRG 328
GLA G +ESL LF EM+ I P+E+ FL +L AC+H GLV + WYF G
Sbjct: 522 QGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYG 581
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
+ PK H+ C+VD LSRAG++ EA EFI MP +P + +LL+GC + +LAE V
Sbjct: 582 LKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNEELAERVA 641
Query: 389 KKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
KL E+ + YV LSN+YA RW + R+ M+ +G+KK G S+VE
Sbjct: 642 GKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMKAKGLKKSGGCSWVE 693
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/369 (31%), Positives = 187/369 (50%), Gaps = 35/369 (9%)
Query: 25 NP--RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82
NP + W I GY ++ +++ LF+K+L + V P+ +T+ + +A L L
Sbjct: 144 NPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLG 203
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
++V I KTGYE DL +SNSLI + G+I AREVFD M K VSW ++LD Y +
Sbjct: 204 MSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEM 263
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
E+ AR++F+ MP+RN VSWSA+I Y + G +E+L +F M G K N S+L
Sbjct: 264 DELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSIL 323
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
A A + AL G + ++ G + + +SLIDMY KCG K+ +F + + +
Sbjct: 324 SALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTI--LEKN 381
Query: 263 VLIWNAMIGGLAMHGFVKES-------------------------------LELFTEMQI 291
++ WNAM+GG +++G ++E+ E+F EM +
Sbjct: 382 MVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMIL 441
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTE 351
+G P++ TF LL ACA + + + K G+ + + D +++G +
Sbjct: 442 LGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIES 501
Query: 352 AYEFICQMP 360
+ + +MP
Sbjct: 502 SKKVFNRMP 510
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 111/423 (26%), Positives = 168/423 (39%), Gaps = 105/423 (24%)
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
QI+K DL + N +I G++ AR++FD MP +SW +++ G+ K G +
Sbjct: 77 QISKDFDGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRE 136
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
+ FE P +NVVSW+A I GYV+ G EA+ +F ++ + K N+VT SV+ ACA+
Sbjct: 137 SMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACAN 196
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH-------- 259
LG G +L ++ G L + SLI + + G I A VF +E+
Sbjct: 197 LGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAI 256
Query: 260 ---------------------QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
Q + + W+AMI G+ +ESL LF M G P+
Sbjct: 257 LDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNI 316
Query: 299 ITFLGLLSACA-----------HG------------------------GLVMEAWYFFKS 323
F +LSA A HG G + + F +
Sbjct: 317 SCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDT 376
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE--------------------- 362
+ ++ MV + MV S G + EA MP+
Sbjct: 377 ILEKNMVS----WNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEM 432
Query: 363 -------------PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVG--LSN 407
P S SLL C + LD + + K+V+L D YVG L++
Sbjct: 433 FEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDT-YVGTALTD 491
Query: 408 VYA 410
+YA
Sbjct: 492 MYA 494
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 73/347 (21%), Positives = 132/347 (38%), Gaps = 109/347 (31%)
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
A+HA + KTG S+ +IS L+ MY + Y K
Sbjct: 42 ALHAHLFKTGISSEQYISIKLLIMYLN----------------------------YRKSA 73
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
E + + F+ ++V + +I V+ G+ EA +F+EM + NE++
Sbjct: 74 EADQISKDFDGF---DLVVHNCMISANVQRGNLDEARKLFDEM----PQTNEISW----- 121
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ-SD 262
T+LI + K G ++E++ F E++ +
Sbjct: 122 ------------------------------TALISGFMKYGRVRESMWYF---ERNPFQN 148
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
V+ W A I G +GF E+++LF ++ + P+++TF ++ ACA+
Sbjct: 149 VVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACAN------------ 196
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
LG G+ +S G I + E ++ SL+T C+ G++
Sbjct: 197 -LGDFGL------------GMSVLG-------LIVKTGYEHDLAVSNSLITLCLRMGEIH 236
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
LA V ++ E + + ++Y EAR + M R
Sbjct: 237 LAREVFDRMEEKDV---VSWTAILDLYVEMDELGEARRIFDEMPQRN 280
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 177/507 (34%), Positives = 260/507 (51%), Gaps = 72/507 (14%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+ S + + L ++ ++ L +P F WNT IR ++ ++ P ++ F +M R GV
Sbjct: 54 LASVPSAAALADVVFARLPLPAARDP--FAWNTAIRLHAPAR-PRAALLYFARMRRCGVR 110
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKT---------------------------- 92
PD T+P + KA G + VHA+ +
Sbjct: 111 PDAYTFPAVLKACGCAPGCRAGLLVHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKV 170
Query: 93 -----GYESDLFISNSLIHMYGSCGD---------------------------------I 114
G DL NS++ Y CG+ +
Sbjct: 171 FDEAGGVSRDLVSWNSMVAGYVGCGEMGLAQEMFDEMPQKDTFSWATLIDGYGKQGGAGV 230
Query: 115 VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
ARE+FD MP + V WNSM+DGYA+ G M+ AR +FE MPERNV+SWS +IDG+V CG
Sbjct: 231 DRARELFDQMPERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCG 290
Query: 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT 234
+ KEAL F+ M G + + + V + ACA LGAL+QGR + Y+ K L + +QT
Sbjct: 291 EAKEALEYFQSMLRCGLRPDRIAAVGAVSACAQLGALEQGRWLHSYLEKKKLLSDVVVQT 350
Query: 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
+LIDMY KCG + A+++F + + V+ WN MI GL HGF +++ LF M+ +
Sbjct: 351 ALIDMYVKCGCLDLAMLIFESMAERS--VVTWNVMIVGLGTHGFGLDAVTLFHRMEAESV 408
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAY 353
D+++ LG+L+AC H GLV E F + K G+ PK EHY +VD L RAG++ +A
Sbjct: 409 AVDDLSVLGMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQAR 468
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413
I MP+EPT + GSLL C +H ++LAE+ ++L +L D G YV LSN+YA
Sbjct: 469 HAIETMPMEPTPELWGSLLAACRSHSCVELAELSVERLADLGADDSGVYVLLSNIYADEG 528
Query: 414 RWDEARTTREAMETRGVKKYPGWSFVE 440
W + R+ M G++K G S +E
Sbjct: 529 MWGDVLRIRKLMSDEGMRKDIGRSVIE 555
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 161/437 (36%), Positives = 260/437 (59%), Gaps = 17/437 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I +S + +P +F + I S + +++ L+V++L + ++P+ T+ L
Sbjct: 78 GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLL 137
Query: 71 KA----SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
K+ SG+L +H + K G D +++ L+ +Y GD+V A++VFD MP
Sbjct: 138 KSCSTKSGKL--------IHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPE 189
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ VS +M+ YAK G + AR +F+ M ER++VSW+ +IDGY + G +AL++F+++
Sbjct: 190 RSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKL 249
Query: 187 RDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
G K +E+T+V+ L AC+ +GAL+ GR + ++ + L + + T LIDMY+KCG+
Sbjct: 250 LAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGS 309
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ-IVGITPDEITFLGL 304
++EA++VF+ + D++ WNAMI G AMHG+ +++L LF EMQ I G+ P +ITF+G
Sbjct: 310 LEEAVLVFNDTPR--KDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGT 367
Query: 305 LSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L ACAH GLV E F+S+G+ G+ PK EHY C+V L RAGQ+ AYE I M ++
Sbjct: 368 LQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDA 427
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ + S+L C HG L + + + L+ L + G YV LSN+YA ++ R
Sbjct: 428 DSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRN 487
Query: 424 AMETRGVKKYPGWSFVE 440
M+ +G+ K PG S +E
Sbjct: 488 LMKEKGIVKEPGISTIE 504
>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 742
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 160/438 (36%), Positives = 256/438 (58%), Gaps = 4/438 (0%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L+ LG +D + +L H + W +I GYS++ +++ F ML G+ PD
Sbjct: 178 ISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDE 237
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T L A +L ++H + + G + +LI MY CGDI A EVFD
Sbjct: 238 VTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDA 297
Query: 124 MPT-KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ + SWN+M+DGY K G +++AR +F+ M +R++V++++LI GY+ G +EAL++
Sbjct: 298 LGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLL 357
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F +MR +A+ T+VS+L ACA LGAL QGR + + + + + + L T+L+DMY K
Sbjct: 358 FMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLK 417
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG ++EA +VF + DV W+AMI GLA +G K +LE F M++ G P+ +T++
Sbjct: 418 CGRVEEASLVFQAMSVR--DVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYI 475
Query: 303 GLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+L+AC+H L+ E +F+ + + P EHY CM+D L R+G + EA + + MP+
Sbjct: 476 AILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPM 535
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
+P A + S+L+ C H +LA + L++L+PD D YV L N+Y ++W++A
Sbjct: 536 QPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQI 595
Query: 422 REAMETRGVKKYPGWSFV 439
R ME RGVKK G+S +
Sbjct: 596 RRLMEERGVKKAAGYSSI 613
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 133/417 (31%), Positives = 196/417 (47%), Gaps = 57/417 (13%)
Query: 29 FYWNTVIRG-YSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGR-LAKRELAVAVH 86
F ++T +R + S P + L+ +M R GV D T+ FL K R A L +H
Sbjct: 68 FLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLH 127
Query: 87 AQIAKTGYESDL-FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
A +T S + +SN +IHMY G AR FD +P K +V+W +++ G AK G +
Sbjct: 128 AACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLL 187
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
+ A + P RNV+SW+ LI GY + G EA+ F M G + +EVT++ +L AC
Sbjct: 188 DDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSAC 247
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV---EKHQSD 262
A L L GR + + + +KG+ ++ L +LIDMYAKCG I A VF + + QS
Sbjct: 248 AQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQS- 306
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
WNAMI G G V + LF +M+ D +TF L++ HGG + EA F
Sbjct: 307 ---WNAMIDGYCKLGHVDVARYLFDQME----DRDLVTFNSLITGYIHGGRLREALLLFM 359
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ + + RA T + SLLT C + G L
Sbjct: 360 QMRRHDL---------------RADNFT-----------------MVSLLTACASLGALP 387
Query: 383 ----LAEIVGKKLVELQPDHDGRYVG--LSNVYAIFKRWDEARTTREAMETRGVKKY 433
L + ++LVE+ Y+G L ++Y R +EA +AM R V +
Sbjct: 388 QGRALHACIEQRLVEVDI-----YLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTW 439
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 165/439 (37%), Positives = 251/439 (57%), Gaps = 14/439 (3%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG++ +S + NP +F W +I ++ + ++S + +ML + P+ T L
Sbjct: 68 LGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSL 127
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA R AVH+ K G S L++S L+ Y GD+ A+++FD MP +
Sbjct: 128 LKACTLHPAR----AVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSL 183
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VS+ +ML YAK G + AR +FE M ++VV W+ +IDGY + G EALV F +M +
Sbjct: 184 VSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMM 243
Query: 190 GS-------KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
+ NE+T+V+VL +C +GAL+ G+ + Y+ + G+ + + + T+L+DMY K
Sbjct: 244 MGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCK 303
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG++++A VF +E DV+ WN+MI G +HGF E+L+LF EM +G+ P +ITF+
Sbjct: 304 CGSLEDARKVFDVMEG--KDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFV 361
Query: 303 GLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+L+ACAH GLV + W F S+ GM PK EHY CMV+ L RAG++ EAY+ + M +
Sbjct: 362 AVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEV 421
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
EP + G+LL C H + L E + + LV G YV LSN+YA + W
Sbjct: 422 EPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKV 481
Query: 422 REAMETRGVKKYPGWSFVE 440
R M+ GV+K PG S +E
Sbjct: 482 RSMMKGSGVEKEPGCSSIE 500
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 109/306 (35%), Gaps = 75/306 (24%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+HA + + G ++ L Y S G + ++ +F P
Sbjct: 42 IHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNP----------------- 84
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
NV W+ +I+ + + AL + +M + N TL S+L A
Sbjct: 85 --------------NVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKA 130
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM------------------------- 239
C L R + + I GLS L + T L+D
Sbjct: 131 C----TLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSY 186
Query: 240 ------YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTE----- 288
YAK G + EA ++F G+ DV+ WN MI G A HG E+L F +
Sbjct: 187 TAMLTCYAKHGMLPEARVLFEGMG--MKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMM 244
Query: 289 --MQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA 346
+ P+EIT + +LS+C G + + + G+ +VD +
Sbjct: 245 GGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKC 304
Query: 347 GQVTEA 352
G + +A
Sbjct: 305 GSLEDA 310
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 162/467 (34%), Positives = 257/467 (55%), Gaps = 36/467 (7%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTY 66
++ G + Y+ KV + P +F N ++RGY+ + P + +++ +M A + PD T+
Sbjct: 44 TFRGRMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEASRLRPDAFTF 103
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI------------ 114
+L +A L VH + K G+ D ++ N+LI+M+ CGD+
Sbjct: 104 CYLLRACAGLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVASVLLDEAGE 163
Query: 115 -------------------VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELM 155
AR++FD K V WN ML YAK GEM AR++F+
Sbjct: 164 GDVVAWSAVIAGHAARGDMAAARKMFDECTHKDIVCWNVMLGAYAKHGEMENARELFDRA 223
Query: 156 PERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGR 215
PE++VVSW+ +I GY G K AL +F+EMR G +E T+VS+L CA+ G LD GR
Sbjct: 224 PEKDVVSWNTIITGYAAQGMLKHALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGR 283
Query: 216 MMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLA 274
M+ + +++ +++ + +L+ MYAKCG + A+ F+ ++ +DV WN++IGGLA
Sbjct: 284 MIHHQLHLERRPWISIVVGNALVSMYAKCGDLHTAVEGFNTMK--DTDVWTWNSVIGGLA 341
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKS 333
HG ++S+ F +M I P+EI+FL +L AC+H GLV + FF + R G+ P +
Sbjct: 342 FHGQAEQSVRFFKKMLEKRIHPNEISFLCVLGACSHAGLVEDGQKFFYLMKDRYGIEPNA 401
Query: 334 EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
HY+C+VD L RAG + EAY + M EP+A + +LL C HG + L ++V +KL+
Sbjct: 402 RHYSCIVDMLGRAGLLDEAYAIVSNMRCEPSAVVWRTLLGACRTHGNMTLGKLVREKLLN 461
Query: 394 LQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ D YV LS +YA W T R +M+ RG++K G++ ++
Sbjct: 462 MNEDASADYVLLSGIYASSGEWLGVETERRSMDRRGIRKAAGYAQID 508
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 169/436 (38%), Positives = 252/436 (57%), Gaps = 39/436 (8%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A S ++ Y+ + ++ P F +NT+IR ++ S KM AGVSPDH T
Sbjct: 31 AASAPASLSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLF-SKMTMAGVSPDHFT 89
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+PF+ KA RL + + +H+ + K G++SD+++ N LIH YG CG + +A + F+ MP
Sbjct: 90 FPFVLKACARL---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMP 146
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ VSW+SM+ +AK G GY EAL +F+
Sbjct: 147 ERDLVSWSSMIACFAKNGF------------------------GY-------EALALFQR 175
Query: 186 MRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M+ VG+ K +EV ++SV+ A + LG L+ G+ + ++ GL T+ L T+L+DM+++CG
Sbjct: 176 MQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCG 235
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
I+E++ VF E + +VL W A+I GLA+HG E+L +F EM+ G PD +TF G+
Sbjct: 236 CIEESMRVFD--EMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGV 293
Query: 305 LSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L AC+HGGLV E W+ F+S+ + GM P EHY CMVD L RAG + EA +F+ MP+ P
Sbjct: 294 LVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRP 353
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ + +LL C+NH ++LAE V +K+ EL HDG YV LSNVY RW E R
Sbjct: 354 NSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRN 413
Query: 424 AMETRGVKKYPGWSFV 439
+M + + K PG S +
Sbjct: 414 SMREKRISKKPGCSLI 429
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 169/462 (36%), Positives = 262/462 (56%), Gaps = 26/462 (5%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPN---KSISLFVKMLRA 57
++ F A S +IDY+ V + P F WNT++R +++ + + +++ LF ML
Sbjct: 57 VIKFCAFSS-RDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCD 115
Query: 58 G-VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI-- 114
G V P+ T+P + KA R ++ +H I K G+ D F+ ++L+ MY C +
Sbjct: 116 GRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMED 175
Query: 115 ---VYAREV--FDGMPTKMS----------VSWNSMLDGYAKCGEMNMARQVFELMPERN 159
++ + V FDG +M V WN M+DG + G++ A+ +F+ MP+R+
Sbjct: 176 AYSLFCKNVVDFDG-SCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRS 234
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
VVSW+ +I GY + G + EA+ +F+EM+ N VTLVSVL A A +GAL+ G+ +
Sbjct: 235 VVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHL 294
Query: 220 YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
Y + + L ++L+DMY+KCG+I EAL VF + K + + W+A+IG AMHG
Sbjct: 295 YAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKR--NAITWSAIIGAFAMHGRA 352
Query: 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYAC 338
++++ F M G+TP+++ ++G+LSAC+H GLV E FF + K G+ P+ EHY C
Sbjct: 353 EDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGC 412
Query: 339 MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398
MVD L RAG + EA E I MP+EP + +LL C H L + E V + L+EL P
Sbjct: 413 MVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHD 472
Query: 399 DGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
G YV LSN+YA W+ R M+ ++K PG S++E
Sbjct: 473 SGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIE 514
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/392 (23%), Positives = 150/392 (38%), Gaps = 89/392 (22%)
Query: 43 NPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISN 102
NPN++ + + P L+ PF + + R K+ +HA KTG D +
Sbjct: 7 NPNRTFNF------SPQPPLILSKPFTSCKTPRDLKQ-----LHAIFIKTGQIQDPLTAA 55
Query: 103 SLIHMYG-SCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV 161
+I S DI YAR VF MP WN++L A+ + ++
Sbjct: 56 EVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQ------------- 102
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMR-DVGSKANEVTLVSVLCACAHLGALDQGRMMLRY 220
EAL++F M D K N T SVL ACA L +G+ +
Sbjct: 103 ---------------SEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGL 147
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEA-------LIVFHGV----------------- 256
++ G + ++L+ MY C +++A ++ F G
Sbjct: 148 IVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLW 207
Query: 257 ---------------------EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
E Q V+ WN MI G A +G E++ LF EMQ I
Sbjct: 208 NIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNID 267
Query: 296 PDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
P+ +T + +L A A G L + W + GK + + +VD S+ G + EA +
Sbjct: 268 PNYVTLVSVLPAIARIGALELGKWIHLYA-GKNKIEIDDVLGSALVDMYSKCGSIDEALQ 326
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
+P + A +++ HG+ + A I
Sbjct: 327 VFETLP-KRNAITWSAIIGAFAMHGRAEDAII 357
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 179/482 (37%), Positives = 265/482 (54%), Gaps = 45/482 (9%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+F ALS G+I+++ + S L NP + WNT+IRGYSK+K F +M++ GV
Sbjct: 88 VLAFCALSDSGDINHAHLLFSQLQNPNTYIWNTMIRGYSKAKMGQTGFLFFCQMVQKGVE 147
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
D ++ F KA + +VH + K G+ L + N L+H YG G + AR V
Sbjct: 148 MDCRSFVFALKACEQFLGVLEGKSVHCVVWKMGFVYTLLVQNGLVHFYGLRGCLGLARLV 207
Query: 121 FDGMPTKMSVSWNSMLDGYAK---------------------------------C---GE 144
FD + + VSW SM+DGY+K C G+
Sbjct: 208 FDEISERDVVSWTSMIDGYSKHKWCDEALKLFDSMLMYGVVEPNEVTMIAVLSSCSQKGD 267
Query: 145 MNMARQVFELMPERNVVS----WSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
+ + + E + RNV +A++D YVKCG A IF+ M E TL
Sbjct: 268 LILGKTFLEYVKTRNVTRSLNLMNAILDMYVKCGCLDSAREIFDTM-GAAFAPMENTLAC 326
Query: 201 VLCACAHLGALDQGRMMLR-YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
VL C LG LD G+ + R Y+ + +++ L +LIDMYAKCG I EA VF+ +
Sbjct: 327 VLPVCGQLGCLDVGQWIHRNYVRMRYNEISVILANALIDMYAKCGVIHEAAKVFNDMP-- 384
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
+ +++ WN+MI A HG K++L +F M G PD+IT +G+LSAC+HGGLV E
Sbjct: 385 ERNLVSWNSMITAYASHGHAKQALSVFERMISGGFKPDDITLVGVLSACSHGGLVAEGQE 444
Query: 320 FFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNH 378
+F+++ ++ G+ PK+EHYACM+D L R G + +AYE I +MP+EP+A+ G+L+ C H
Sbjct: 445 YFQNMKRKYGIEPKNEHYACMIDLLGRVGLLEDAYELITKMPMEPSAAAWGALVHACRMH 504
Query: 379 GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSF 438
G +++A+I +L+EL P+ G YV L+N+ A +RW + + R M R VKK PG S
Sbjct: 505 GNVEVAKIAAPRLLELDPEDSGIYVLLANICASGRRWGDVKMARRMMRERRVKKIPGRSI 564
Query: 439 VE 440
VE
Sbjct: 565 VE 566
>gi|224058579|ref|XP_002299552.1| predicted protein [Populus trichocarpa]
gi|222846810|gb|EEE84357.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 171/445 (38%), Positives = 257/445 (57%), Gaps = 15/445 (3%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGV 59
+L +S++S NI+Y+ + + NP F +N +IRGY++ + P ++SLF ML A
Sbjct: 63 LLCYSSISQYANINYAQSIFNFDKNPNTFAYNVMIRGYAQREKPENALSLFYSMLCNANS 122
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
+ LT+PF+ KA ++ E VH + K G DLF+ NSLI MY SCG I +A +
Sbjct: 123 GQNKLTFPFVLKACSQVRAIEEGKQVHGLVFKHGLSEDLFVQNSLISMYSSCGLIGFACQ 182
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VF+ + VSWNSM+ G G + +Q+F+ M +R++V+W+ LIDGYVK G EA
Sbjct: 183 VFNKIDDPDVVSWNSMISGLVDLGFVEEGKQMFDRMSKRSLVTWNCLIDGYVKAGLLMEA 242
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
+F++MR T+VSVL AC++LGAL+QG M ++ G+ + L T+L++M
Sbjct: 243 RELFDQMR--------FTMVSVLTACSYLGALEQGEWMQAHIEKNGIDVNSVLGTALVEM 294
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
+AKCG+I+ AL VF +E + DV WN++I LA HG +E+ +F++M D I
Sbjct: 295 FAKCGSIERALSVFKSIE--ERDVGAWNSIIHKLAAHGHGQEAFAIFSDMLRSNTLLDGI 352
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
FLGLLS C H GLV E FF+ + + G+VPK EHY CMVD L A + EA + I
Sbjct: 353 IFLGLLSVCRHLGLVDEGKRFFQLMSEEYGLVPKVEHYGCMVDLLCHADLLEEARDLIDS 412
Query: 359 ---MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
++ + M G+LL + + E K L++L P Y LSN+Y+ +
Sbjct: 413 SHASQMKSSVPMWGALLGVSCQLKNIVMGEYAAKHLLQLDPFDGNCYTVLSNLYSAAGLY 472
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
++A R M+ +G++K PG S +E
Sbjct: 473 EKAIEVRNEMKKQGLEKIPGSSSME 497
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 162/431 (37%), Positives = 247/431 (57%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ S + + + + WN++I GY+++ N ++ SLF M R G+ D T L
Sbjct: 159 GSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLL 218
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A E VH+ + G DL ++N+L+ MYG CGD++ A FD MP K +V
Sbjct: 219 FACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAV 278
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW SML AK ++ AR FE +PE++++SW+A+I YV+ G + EAL ++ M+ +G
Sbjct: 279 SWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLG 338
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+E TL +VL AC LG L G+M+ + D + + L SL+DMYA+CG + A+
Sbjct: 339 LAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAI 398
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F E +V+ WNA+IG LAMHG +++L F M PDEITF+ LLSAC H
Sbjct: 399 SLFS--EMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNH 456
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GGL+ Y+F+++ + P EHYACMVD L R GQ+ +A + I MP+ P + G
Sbjct: 457 GGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWG 516
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C HG + + + V K+L+EL+ G +V +SN+ +W++ + R+ M G
Sbjct: 517 ALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWG 576
Query: 430 VKKYPGWSFVE 440
+KK G S +E
Sbjct: 577 MKKNMGVSSIE 587
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 118/428 (27%), Positives = 197/428 (46%), Gaps = 63/428 (14%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+ S+ AL G + Y+ ++ + +P F +N++IR Y S P +++ L M+R G+
Sbjct: 48 LASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGIL 107
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ T PFL KA R+ E + H + K G+ +F+ N+L+H
Sbjct: 108 PNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLH-------------- 153
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
YA G + +R+ F+ M +RNVVSW+++I+GY + G+ +EA
Sbjct: 154 -----------------SYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREAC 196
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+FE MR G A+E TLVS+L AC+ G L+ G+++ +++ +G + L L +L+DMY
Sbjct: 197 SLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMY 256
Query: 241 AKCGAIKEALIVFH---------------GVEKHQS--------------DVLIWNAMIG 271
KCG + A F + K S ++ WNAMI
Sbjct: 257 GKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMIS 316
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
G E+L+L+ M+++G+ PDE T +LSAC G + + P
Sbjct: 317 CYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNP 376
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL 391
+ ++D +R GQV A +MP + S +++ HG+ A + + +
Sbjct: 377 GVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISW-NAIIGALAMHGRAQDALMFFRSM 435
Query: 392 VE--LQPD 397
V PD
Sbjct: 436 VSDAFPPD 443
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 123/289 (42%), Gaps = 41/289 (14%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
AL+ +ID + + I WN +I Y + ++++ L+ +M G++PD T
Sbjct: 286 ALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFT 345
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ A G+L +H I + + + NSL+ MY CG + A +F MP
Sbjct: 346 LAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMP 405
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+K +SWN A+I G ++AL+ F
Sbjct: 406 SKNVISWN-------------------------------AIIGALAMHGRAQDALMFFRS 434
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR-----YMIDKGLSLTLPLQTSLIDMY 240
M +E+T V++L AC H G L+ G+ + Y + G+ ++D+
Sbjct: 435 MVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHY----ACMVDLL 490
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
+ G + +A+ + + + DV++W A++G +HG ++ ++ ++
Sbjct: 491 GRGGQLAKAVDLIKDMPM-RPDVVVWGALLGACRIHGHIQIGKQVIKQL 538
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 175/519 (33%), Positives = 276/519 (53%), Gaps = 81/519 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ F A S GN++Y+ V + + P ++ WN++I+GYS S++P+++++++ +M + G +
Sbjct: 43 LVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYA 102
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PDH T+PF+ KA + L VH I KTG+E D++ + +L+ MY +CGD+ A +V
Sbjct: 103 PDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKV 162
Query: 121 FDGMPTKMSVSWNSMLDG-----------------------------------YAKCGEM 145
FD +P V+W S++ G A+ ++
Sbjct: 163 FDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDL 222
Query: 146 NMARQV-----------FELMPERNVVSWSALIDGYVKCGDYK----------------- 177
N R V F+ NV+ +A++D Y KCG K
Sbjct: 223 NAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAW 282
Query: 178 --------------EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
EAL +F +MR G ++ T + V+ ACAHLGAL G+ + Y+
Sbjct: 283 NSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSK 342
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
L+ + T+L+DMYAK G + A VF ++K DV W ++I GLAMHG +E+L
Sbjct: 343 TNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQK--KDVTAWTSLIIGLAMHGHGEEAL 400
Query: 284 ELFTEMQ-IVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVD 341
F +MQ + PDEIT++G+LSAC+H G V + F S+ G+ P ++HY CMVD
Sbjct: 401 TFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVD 460
Query: 342 ALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR 401
LSRAG++ EA + +MP+EP ++ +LL GC + +D+A+ V +++ EL+ D G
Sbjct: 461 LLSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGV 520
Query: 402 YVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
YV LSN+YA RW+E + RE M+ R ++K G S VE
Sbjct: 521 YVLLSNIYAGACRWEEVKMARELMKERKIQKSLGHSSVE 559
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 150/374 (40%), Positives = 232/374 (62%), Gaps = 5/374 (1%)
Query: 70 AKASGRLAKREL-AVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
A+ L +R L +H+ + +TG+ SD +S SL+ +Y +C + AR VF M +
Sbjct: 84 ARLPSHLLRRSLLGPQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVR 143
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
V+WN M+ GY K G++ AR++F+ MPERNVVSW+ +I GY + +EA+ +F M+
Sbjct: 144 DVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQ 203
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G + + V L+SVL AC LGA+D G + R+++ +GL +PL S+IDMY KCG I+
Sbjct: 204 VEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIE 263
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
+A+ VF G+E + V+ W +I G A+HG +++E+F M+ + P+++TFL +LSA
Sbjct: 264 KAVEVFEGME--EKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSA 321
Query: 308 CAHGGLV-MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H GL + WYF + + + P+ EHY CMVD L RAG + EA + + MPL+ A+
Sbjct: 322 CSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKANAA 381
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ G+LL HG DL E L+EL+P + G Y+ LSN++A +RWD+ R+AM+
Sbjct: 382 IWGALLAASRTHGDADLGEEALVHLIELEPSNSGNYILLSNIFAEQERWDDVSKLRKAMK 441
Query: 427 TRGVKKYPGWSFVE 440
RG++ PG S +E
Sbjct: 442 ERGLRNVPGASSIE 455
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 123/268 (45%), Gaps = 33/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ ++ ++ + + W TVI GY++ + P +++ +F +M G+ PD + +
Sbjct: 159 GDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLSVL 218
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G L +L VH + + G ++ + NS+I MY CG I A EVF+GM K V
Sbjct: 219 SACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVV 278
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W +++ G+A G A ++F M N+
Sbjct: 279 TWTTLIAGFALHGLGLQAVEMFRRMERENMAP---------------------------- 310
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
N+VT +++L AC+H+G D GR M+ + + + ++D+ + G +KEA
Sbjct: 311 ---NDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEA 367
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
+ + +++ IW A++ HG
Sbjct: 368 QDLVKDMPL-KANAAIWGALLAASRTHG 394
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 158/432 (36%), Positives = 237/432 (54%), Gaps = 35/432 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + +V + + WN++I GYS + I LF +M G+ P T +
Sbjct: 256 GCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSIL 315
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A R +L +H I + E+D+F+++SLI
Sbjct: 316 MACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLI------------------------- 350
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
D Y KCG + A VF+ MP+ NVVSW+ +I GYVK G Y EALVIF +MR G
Sbjct: 351 ------DLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAG 404
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K + +T SVL AC+ L L++G+ + ++I+ L + + +L+DMYAKCGA+ EAL
Sbjct: 405 VKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEAL 464
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F+ + + D + W +MI HG E+L+LF +MQ PD++TFL +LSAC+H
Sbjct: 465 HIFNQLP--ERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSH 522
Query: 311 GGLVMEAWYFFKS-LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP-LEPTASML 368
GLV E Y+F + + G P EHY+C++D L R G++ EAYE + + P + +L
Sbjct: 523 AGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLL 582
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+L + C H KLDL E +G+ L+E PD Y+ LSN+YA K+WDE R R ++
Sbjct: 583 STLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKEL 642
Query: 429 GVKKYPGWSFVE 440
G+KK PG S++E
Sbjct: 643 GLKKNPGCSWIE 654
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 128/452 (28%), Positives = 196/452 (43%), Gaps = 87/452 (19%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
K+ + + WN VI Y + P K++ LF +M +G PD +T + + RL
Sbjct: 162 KLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLL 221
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
E +H ++ ++G+ D F+S++L+ MYG
Sbjct: 222 DLERGKEIHMELVRSGFALDGFVSSALVDMYG---------------------------- 253
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
KCG + MA++VFE + +NVVSW+++I GY GD K + +F M + G + T
Sbjct: 254 ---KCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTT 310
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
L S+L AC+ L G+ + Y+I + + + +SLID+Y KCG I A VF +
Sbjct: 311 LSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP 370
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC--------- 308
K ++V+ WN MI G G E+L +FT+M+ G+ PD ITF +L AC
Sbjct: 371 K--TNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKG 428
Query: 309 --------------------------AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDA 342
A G V EA + F L +R V + M+ A
Sbjct: 429 KEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVS----WTSMIAA 484
Query: 343 LSRAGQVTEA---YEFICQMPLEPTASMLGSLLTGCMNHGKLD---------LAEIVGKK 390
GQ EA +E + Q +P ++L+ C + G +D +AE K
Sbjct: 485 YGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKP 544
Query: 391 LVELQP---DHDGRYVGLSNVYAIFKRWDEAR 419
VE D GR L Y I +R + R
Sbjct: 545 AVEHYSCLIDLLGRVGRLREAYEILQRTPDIR 576
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 2/174 (1%)
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+ L+S+L C L QG+++ + ++ GL + L SLI++Y C + A +VF
Sbjct: 2 DTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF 61
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTE-MQIVGITPDEITFLGLLSACAHGG 312
+E + D+ +WN ++ + E LE+F + + PD T+ +L AC+ G
Sbjct: 62 QTIE-NPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLG 120
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
V + K G + V ++ +A + +MP AS
Sbjct: 121 RVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVAS 174
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 158/432 (36%), Positives = 237/432 (54%), Gaps = 35/432 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + +V + + WN++I GYS + I LF +M G+ P T +
Sbjct: 448 GCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSIL 507
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A R +L +H I + E+D+F+++SLI
Sbjct: 508 MACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLI------------------------- 542
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
D Y KCG + A VF+ MP+ NVVSW+ +I GYVK G Y EALVIF +MR G
Sbjct: 543 ------DLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAG 596
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K + +T SVL AC+ L L++G+ + ++I+ L + + +L+DMYAKCGA+ EAL
Sbjct: 597 VKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEAL 656
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F+ + + D + W +MI HG E+L+LF +MQ PD++TFL +LSAC+H
Sbjct: 657 HIFNQLP--ERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSH 714
Query: 311 GGLVMEAWYFFKS-LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP-LEPTASML 368
GLV E Y+F + + G P EHY+C++D L R G++ EAYE + + P + +L
Sbjct: 715 AGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLL 774
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+L + C H KLDL E +G+ L+E PD Y+ LSN+YA K+WDE R R ++
Sbjct: 775 STLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKEL 834
Query: 429 GVKKYPGWSFVE 440
G+KK PG S++E
Sbjct: 835 GLKKNPGCSWIE 846
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 128/452 (28%), Positives = 196/452 (43%), Gaps = 87/452 (19%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
K+ + + WN VI Y + P K++ LF +M +G PD +T + + RL
Sbjct: 354 KLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLL 413
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
E +H ++ ++G+ D F+S++L+ MYG
Sbjct: 414 DLERGKEIHMELVRSGFALDGFVSSALVDMYG---------------------------- 445
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
KCG + MA++VFE + +NVVSW+++I GY GD K + +F M + G + T
Sbjct: 446 ---KCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTT 502
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
L S+L AC+ L G+ + Y+I + + + +SLID+Y KCG I A VF +
Sbjct: 503 LSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP 562
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC--------- 308
K ++V+ WN MI G G E+L +FT+M+ G+ PD ITF +L AC
Sbjct: 563 K--TNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKG 620
Query: 309 --------------------------AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDA 342
A G V EA + F L +R V + M+ A
Sbjct: 621 KEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFV----SWTSMIAA 676
Query: 343 LSRAGQVTEA---YEFICQMPLEPTASMLGSLLTGCMNHGKLD---------LAEIVGKK 390
GQ EA +E + Q +P ++L+ C + G +D +AE K
Sbjct: 677 YGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKP 736
Query: 391 LVELQP---DHDGRYVGLSNVYAIFKRWDEAR 419
VE D GR L Y I +R + R
Sbjct: 737 AVEHYSCLIDLLGRVGRLREAYEILQRTPDIR 768
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
G+++ + ++ GL + L SLI++Y C + A +VF +E + D+ +WN ++
Sbjct: 214 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIE-NPLDITLWNGLMAAC 272
Query: 274 AMHGFVKESLELFTE-MQIVGITPDEITFLGLLSACAHGGLV 314
+ E LE+F + + PD T+ +L AC+ G V
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRV 314
>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 575
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/437 (34%), Positives = 257/437 (58%), Gaps = 13/437 (2%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFL 69
GN+ + + + WN ++ GY++ P ++I LF ML G V PD T+ +
Sbjct: 142 GNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATV 201
Query: 70 AKASGRLAKRELAVAVHAQIA-KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT-- 126
+ L L+ ++ ++ K G+ + F+ +L+ M+ CG++ A ++F+ +
Sbjct: 202 ISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYK 261
Query: 127 -KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ SV WN+M+ YA+ G++ A+ +F+ MP+R+ VSW+++I GY + G+ +A+ +FEE
Sbjct: 262 YRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEE 321
Query: 186 M--RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
M + K +EVT+VSV AC HLG L G + + + +++ + SLI+MY++C
Sbjct: 322 MISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRC 381
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G++++A+++F E D++ +N +I G A HG ES+EL ++M+ GI PD IT++
Sbjct: 382 GSMQDAVLIFQ--EMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIA 439
Query: 304 LLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
+L+AC+H GL+ E F+S+ P +HYACM+D L RAG++ EA + I MP+EP
Sbjct: 440 ILTACSHAGLLDEGQRLFESI----KFPDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEP 495
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
A + GSLL H +++L E+ KL +++P + G Y LSN+YA RW E R+
Sbjct: 496 HAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRD 555
Query: 424 AMETRGVKKYPGWSFVE 440
M +GVKK G S++E
Sbjct: 556 TMRKQGVKKTTGLSWLE 572
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 145/341 (42%), Gaps = 53/341 (15%)
Query: 48 ISLFVKMLR-AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIH 106
+SLF ML+ + P+ Y + K++G + LA + K+GY+ D ++ N ++
Sbjct: 16 VSLFKHMLQHCDIKPNASFYSVMMKSAGSESMLFLA-----HVLKSGYDRDHYVRNGILG 70
Query: 107 MYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSAL 166
+Y AK G + AR++F+ MP+R V W+ +
Sbjct: 71 IY-------------------------------AKYGPIEFARKLFDEMPDRTVADWNVM 99
Query: 167 IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL 226
I GY KCG+ +EA +F M D N +T +++ A G L RM M ++
Sbjct: 100 ISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPER-- 157
Query: 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH---QSDVLIWNAMIGGLAMHGFVKESL 283
++ +++ YA+ GA +E + +F+ + Q D W +I + G S
Sbjct: 158 --SVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSE 215
Query: 284 ELFTEM-QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG---KRGMVPKSEHYACM 339
+ ++ VG P+ LL A G + A F+ LG R VP + M
Sbjct: 216 SIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVP----WNAM 271
Query: 340 VDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
+ A +R G + A +MP T S S++ G +G+
Sbjct: 272 ISAYARVGDLPSAKHLFDKMPQRDTVS-WNSMIAGYTQNGE 311
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 134/291 (46%), Gaps = 62/291 (21%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS--P 61
SA + +G++ + + + WN++I GY+++ K+I LF +M+ + S P
Sbjct: 272 ISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKP 331
Query: 62 DHLTYPFLAKASGRLAKREL---AVAV----HAQIAKTGYESDLFISNSLIHMYGSCGDI 114
D +T + A G L + L AV++ H QI+ + Y NSLI+MY CG +
Sbjct: 332 DEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVY-------NSLINMYSRCGSM 384
Query: 115 VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
A +F M T+ VS+N+++ G+A+ G
Sbjct: 385 QDAVLIFQEMATRDLVSYNTLISGFAEHGHG----------------------------- 415
Query: 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP--- 231
E++ + +M++ G + + +T +++L AC+H G LD+G+ + S+ P
Sbjct: 416 --MESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFE-------SIKFPDVD 466
Query: 232 LQTSLIDMYAKCGAIKEALIVFHG--VEKHQSDVLIWNAMIGGLAMHGFVK 280
+IDM + G ++EA+ + +E H I+ +++ ++H V+
Sbjct: 467 HYACMIDMLGRAGRLEEAMKLIQSMPMEPHAG---IYGSLLNATSIHKQVE 514
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 26/198 (13%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G++ + + ++ + +NT+I G+++ + +SI L KM G+ PD +TY
Sbjct: 379 SRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYI 438
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTG---YES----DLFISNSLIHMYGSCGDIVYAREV 120
+ L HA + G +ES D+ +I M G G + A ++
Sbjct: 439 AI-----------LTACSHAGLLDEGQRLFESIKFPDVDHYACMIDMLGRAGRLEEAMKL 487
Query: 121 FDGMPTKMSVS-WNSMLDGYA-----KCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
MP + + S+L+ + + GE+ A+ +F++ P N +++ L + Y G
Sbjct: 488 IQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAK-LFKVEP-HNSGNYALLSNIYASAG 545
Query: 175 DYKEALVIFEEMRDVGSK 192
+KE + + MR G K
Sbjct: 546 RWKEGDKVRDTMRKQGVK 563
>gi|242033621|ref|XP_002464205.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
gi|241918059|gb|EER91203.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
Length = 521
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 161/431 (37%), Positives = 236/431 (54%), Gaps = 2/431 (0%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
++ Y+ +++ H P F WNTVIR S P +++LFV ML + P+ T P L
Sbjct: 81 DVSYAERLVRHHPRPNSFMWNTVIRALSDGARPEAAVALFVDMLGSPTPPERRTLPSLLA 140
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A RL + A+H K G D ++ N+ I MY SC A +F P +V+
Sbjct: 141 AYARLGRAGDGAALHGMALKLGLAGDAYVRNATIAMYASCARADEALALFGQCPEFDAVA 200
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
NS + A+ G ++ AR VF+ MPER V +WSA++ Y + EAL +F M+ G
Sbjct: 201 CNSAIVALARAGRVDEARAVFDGMPERTVATWSAMVSAYARAARCGEALALFSAMQADGV 260
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ N LVSVL CA LGALDQG + Y+ G+++ + T+L+DMY KCG++ +A
Sbjct: 261 EPNANVLVSVLGCCASLGALDQGAWVHAYIDRHGVAMNALVVTALVDMYCKCGSVDDARQ 320
Query: 252 VFHGVEKHQSDVL-IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF S L WN+M+ GLA+HG +E++ LF+E++ G++PD +TF+ +L+A H
Sbjct: 321 VFDAARSQGSAKLSSWNSMMQGLAVHGQWREAVALFSELRSYGLSPDNVTFIAVLTAYGH 380
Query: 311 GGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
G+ EA F S+ V P EHY C+VDAL+RAG++ EA + I MP+ P A++ G
Sbjct: 381 AGMPDEAQAAFASMATEHSVEPGIEHYGCLVDALARAGRLREAEDAIRSMPMAPDAAVWG 440
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL+GC HG +L ++ V P G YV ++V A R M G
Sbjct: 441 ALLSGCRLHGDAELGARAAREAVRCDPRDSGAYVLAASVLARGGNPGRGAGVRGRMREAG 500
Query: 430 VKKYPGWSFVE 440
V K PG S +E
Sbjct: 501 VGKVPGCSMIE 511
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 116/276 (42%), Gaps = 36/276 (13%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
AL+ G +D + V + + W+ ++ Y+++ ++++LF M GV P+
Sbjct: 207 ALARAGRVDEARAVFDGMPERTVATWSAMVSAYARAARCGEALALFSAMQADGVEPNANV 266
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ L + VHA I + G + + +L+ MY CG + AR+VFD
Sbjct: 267 LVSVLGCCASLGALDQGAWVHAYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAAR 326
Query: 126 TKMSV---SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
++ S SWNSM+ G A G+ ++EA+ +
Sbjct: 327 SQGSAKLSSWNSMMQGLAVHGQ-------------------------------WREAVAL 355
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYA 241
F E+R G + VT ++VL A H G D+ + M + + + L+D A
Sbjct: 356 FSELRSYGLSPDNVTFIAVLTAYGHAGMPDEAQAAFASMATEHSVEPGIEHYGCLVDALA 415
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
+ G ++EA + D +W A++ G +HG
Sbjct: 416 RAGRLREAEDAIRSMPM-APDAAVWGALLSGCRLHG 450
>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 166/436 (38%), Positives = 260/436 (59%), Gaps = 8/436 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG++ ++ KV + + P + +N +I GY+K +++ L+ KM+ G+ PD T L
Sbjct: 178 LGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGFGLEALELYYKMVSDGIEPDEYTLLGL 237
Query: 70 AKASGRLAKRELAVAVHAQIAKTG--YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
G L+ L VH I + G Y S+L + N+L+ MY C + A+ FD + K
Sbjct: 238 LVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILRNALLDMYFKCKESGLAKRAFDALKKK 297
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG-DYKEALVIFEEM 186
SWN+M+ G+ + G+M A+ VF+ MP+R++VSW++L+ Y K G D + +F EM
Sbjct: 298 DMRSWNTMVVGFVRLGDMEAAQAVFDQMPQRDLVSWNSLLFCYSKKGCDQRAVRELFYEM 357
Query: 187 RDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
V K + VT+VS++ A+ G L GR + MI L L ++LIDMY KCG
Sbjct: 358 LIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLMIRLQLEGDAFLSSALIDMYCKCGL 417
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
I+ A +VF + DV +W +MI G A HG+ +++L+LF MQ +TP+++T L +L
Sbjct: 418 IERAFMVFKTAT--EKDVPLWTSMITGFAFHGYGQQALQLFKRMQEEDVTPNKVTLLAVL 475
Query: 306 SACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFI-CQMPLEP 363
+AC+H GLV E + F + ++ G P++EHY +VD L RAG++ EA + + +MP+ P
Sbjct: 476 TACSHSGLVEEGLHVFYHMKEKFGFHPETEHYGSLVDLLCRAGRLEEAKDIVQNKMPMRP 535
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ SM GS+L+ C ++ AE+ +L++L+P+ +G YV LSN+YA RW + TRE
Sbjct: 536 SQSMWGSILSACREGEDIETAELALSELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTRE 595
Query: 424 AMETRGVKKYPGWSFV 439
AME+RGVKK G+S V
Sbjct: 596 AMESRGVKKTAGYSSV 611
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 107/413 (25%), Positives = 186/413 (45%), Gaps = 70/413 (16%)
Query: 1 MLSFSALSYLGNIDYS-CKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
++ FSA++Y N+D + L NP +F +NT+I S SKN + L+ M+R V
Sbjct: 71 LIFFSAITYPENLDLAKLLFLDFTPNPNVFVYNTMISAVSSSKN--ECFGLYSSMIRYRV 128
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
SPD T+ L KAS L++ + +H I +G L + N L
Sbjct: 129 SPDRQTFLHLMKASSFLSEVK---QIHCHIIVSGC---LSLGNYL--------------- 167
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
WNS++ Y + G + A +VF +MP+ +V S++ +I GY K G EA
Sbjct: 168 ------------WNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGFGLEA 215
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG--LSLTLPLQTSLI 237
L ++ +M G + +E TL+ +L C HL + G+ + ++ +G S L L+ +L+
Sbjct: 216 LELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILRNALL 275
Query: 238 DMYAKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNA 268
DMY KC A F ++K Q D++ WN+
Sbjct: 276 DMYFKCKESGLAKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPQRDLVSWNS 335
Query: 269 MIGGLAMHGFVKESL-ELFTEMQIV-GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
++ + G + ++ ELF EM IV + PD +T + L+S A+ G + + + +
Sbjct: 336 LLFCYSKKGCDQRAVRELFYEMLIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLMIR 395
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+ + + ++D + G + A+ + + E + S++TG HG
Sbjct: 396 LQLEGDAFLSSALIDMYCKCGLIERAF-MVFKTATEKDVPLWTSMITGFAFHG 447
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 156/420 (37%), Positives = 244/420 (58%), Gaps = 35/420 (8%)
Query: 54 MLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113
M++A VSP T+ L KA +++ AVH I K G++S +F+ +L+ YG+ G
Sbjct: 1 MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60
Query: 114 IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKC 173
IV AR VFD M + +W +M+ +A+ G+M+ ARQ+F+ MP RN SW+A+IDGY +
Sbjct: 61 IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRL 120
Query: 174 GD-------------------------------YKEALVIFEEMRDVGSKANEVTLVSVL 202
+ ++EAL +F EM+ G +EVT+ +++
Sbjct: 121 RNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATII 180
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
ACAHLGALD G+ + Y ++ G L + + ++LIDMYAKCG++ ++L+VF + K +
Sbjct: 181 SACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRK--KN 238
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
+ WN++I GLA+HG+ +E+L +F+ MQ I P+ +TF+ +L AC H GLV E F
Sbjct: 239 LFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFL 298
Query: 323 SLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
S+ + + P+ EHY CMVD L +AG + +A E + M +EP + + G+LL GC H L
Sbjct: 299 SMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNL 358
Query: 382 DLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY-PGWSFVE 440
+A++ + L+P++ G Y L N+YA RW E R M+ GV+K PG S++E
Sbjct: 359 KIAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIE 418
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 133/277 (48%), Gaps = 39/277 (14%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S L N++ + + S + N I W T+I YS++K +++++F +M G+ PD +T
Sbjct: 118 SRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMA 177
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A L +L +H + G++ D++I ++LI MY CG + + VF + K
Sbjct: 178 TIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKK 237
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
WNS+++G A + GY +EAL +F M+
Sbjct: 238 NLFCWNSIIEGLA--------------------------VHGYA-----EEALAMFSRMQ 266
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS----LIDMYAKC 243
K N VT +SVL AC H G +++GR + + ++P + ++D+ K
Sbjct: 267 REKIKPNGVTFISVLGACTHAGLVEEGR---KRFLSMSRDFSIPPEIEHYGCMVDLLGKA 323
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G +++AL + + + + + +IW A++GG +H +K
Sbjct: 324 GLLEDALELVRSM-RMEPNSVIWGALLGGCKLHRNLK 359
>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 517
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 177/493 (35%), Positives = 257/493 (52%), Gaps = 70/493 (14%)
Query: 15 YSCKVLSHLS--NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+ C L LS + + WN VI+ NP+++I +V+M R G D+ T+P L KA
Sbjct: 4 FHCSFLYSLSSVDSGLQRWNKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKA 63
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMY------------------------ 108
+ L+ + A+H Q KTG+ F+ +L+ MY
Sbjct: 64 ASSLSSCCIGFALHGQAMKTGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVW 123
Query: 109 -------GSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK-------------------- 141
SCG + A ++FD MP K S+N M+ GYAK
Sbjct: 124 NSMLAAYASCGQMDNAMKLFDNMPLKDLASFNIMISGYAKIGKKAAARSIFDRIHAKDIV 183
Query: 142 -----------CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
G+M AR +F++MP++NV++W+ +I GY+ Y EA+ +F+EM+
Sbjct: 184 SWNSMILACTNVGDMGNARNLFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGN 243
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+A+ +T+ VL ACAHLG L +G M Y D L+ + + TSLIDMYAKCG I+ +L
Sbjct: 244 HEADHLTVTLVLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSL 303
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF+ + D+ WNA+I GLA+HG+ +++L +M+ G+ PDEITF+GLLSAC+H
Sbjct: 304 EVFY--KSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNGVRPDEITFIGLLSACSH 361
Query: 311 GGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
LV E F + K G+ PK EHY CMVD L RAG + A++ I MP EP S+LG
Sbjct: 362 RSLVQEGCRLFDCMEKEFGLPPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPFEPGESILG 421
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDH--DGRYVGLSNVYAIFKRWDEARTTREAMET 427
+LL C+ H L+ E V L+ + H DG ++ N+YA +W EA RE M
Sbjct: 422 ALLGACVIHQDLETGEKV-INLITSKAHHVSDGEFMMFVNLYASCGQWKEANRWRERMNE 480
Query: 428 RGVKKYPGWSFVE 440
G+ K G S +E
Sbjct: 481 SGIAKTAGGSTIE 493
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 110/272 (40%), Gaps = 33/272 (12%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A + +G++ + + + + WNT+I GY ++ +++ LF +M DHLT
Sbjct: 191 ACTNVGDMGNARNLFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLT 250
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ A L +H S ++ SLI MY CG I + EVF
Sbjct: 251 VTLVLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQ 310
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
K WN+++ G A + GY A+ + ++
Sbjct: 311 VKDIYCWNAIISGLA--------------------------LHGYGHA-----AVKLLDK 339
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCG 244
MRD G + +E+T + +L AC+H + +G + M + GL L ++D+ + G
Sbjct: 340 MRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFDCMEKEFGLPPKLEHYGCMVDLLGRAG 399
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ A + + + ++ A++G +H
Sbjct: 400 FLDPAFQLIKAMPFEPGESIL-GALLGACVIH 430
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 6/186 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY-PFL 69
G I S +V I+ WN +I G + + ++ L KM GV PD +T+ L
Sbjct: 297 GTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNGVRPDEITFIGLL 356
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+ S R +E + G L ++ + G G + A ++ MP +
Sbjct: 357 SACSHRSLVQEGCRLFDCMEKEFGLPPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPFEPG 416
Query: 130 VS-WNSMLDGYAKCGEMNMARQVFELMPER-NVVS---WSALIDGYVKCGDYKEALVIFE 184
S ++L ++ +V L+ + + VS + ++ Y CG +KEA E
Sbjct: 417 ESILGALLGACVIHQDLETGEKVINLITSKAHHVSDGEFMMFVNLYASCGQWKEANRWRE 476
Query: 185 EMRDVG 190
M + G
Sbjct: 477 RMNESG 482
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 157/438 (35%), Positives = 250/438 (57%), Gaps = 35/438 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S S G D++ ++ + + W +I G+ ++ + ++++ FV+M + GV+ + +
Sbjct: 146 SGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEM 205
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + KA+G++ +VH +TG + D+FI +SL+ MYG
Sbjct: 206 TVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYG-------------- 251
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
KC + A++VF+ MP RNVV+W+ALI GYV+ + + +++F
Sbjct: 252 -----------------KCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVF 294
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
EEM NE TL SVL ACAH+GAL +GR + YMI + + T+LID+Y KC
Sbjct: 295 EEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKC 354
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G ++EA++VF + H+ +V W AMI G A HG+ +++ +LF M ++P+E+TF+
Sbjct: 355 GCLEEAILVFERL--HEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMA 412
Query: 304 LLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+LSACAHGGLV E F S+ G+ M K++HYACMVD R G + EA I +MP+E
Sbjct: 413 VLSACAHGGLVEEGRRLFLSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPME 472
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
PT + G+L C+ H +L + ++++LQP H GRY L+N+Y+ + WDE R
Sbjct: 473 PTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVR 532
Query: 423 EAMETRGVKKYPGWSFVE 440
+ M+ + V K PG+S++E
Sbjct: 533 KQMKDQQVVKSPGFSWIE 550
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 145/301 (48%), Gaps = 37/301 (12%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISL--FVKMLRAGVSPDHLTYPFLAKA 72
Y+ ++L L I W+++I +S N+ +S + M R GV P T+P L KA
Sbjct: 54 YARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKA 113
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+L HA I K G +SD F+ NSLI
Sbjct: 114 VFKLRDSN-PFQFHAHIVKFGLDSDPFVRNSLI--------------------------- 145
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
GY+ G + A ++F+ +++VV+W+A+IDG+V+ G EA+V F EM+ G
Sbjct: 146 ----SGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVA 201
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG-LSLTLPLQTSLIDMYAKCGAIKEALI 251
ANE+T+VSVL A + + GR + ++ G + + + +SL+DMY KC +A
Sbjct: 202 ANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQK 261
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF E +V+ W A+I G + + +F EM + P+E T +LSACAH
Sbjct: 262 VFD--EMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHV 319
Query: 312 G 312
G
Sbjct: 320 G 320
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 163/427 (38%), Positives = 249/427 (58%), Gaps = 8/427 (1%)
Query: 20 LSHLSNP-RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
L H N + W + I + K+ N K+ S F++ML A V P+H+T L A
Sbjct: 43 LKHKPNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPS 102
Query: 79 RE---LAVAVHAQIAKTGYE-SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
+ A+H K G+ +D+ + +LI MY CG + YAR VFD M + VSWN+
Sbjct: 103 KTSITFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNT 162
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
M+DGY K G+++ A ++F+ +P +NVVSW+ +I G+VK Y+EAL F EM+ G +
Sbjct: 163 MIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPD 222
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
VT+++++ ACA+LGAL G + R ++ K + + SLIDMYA+CG I+ A VF
Sbjct: 223 FVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFD 282
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
G+ Q +++ WN++I G A++G ++L F M+ G+ P+ +++ L+AC+H GL+
Sbjct: 283 GMS--QRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLI 340
Query: 315 MEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
E F + + P+ EHY C+VD SRAG++ EA++ I +MP+ P +LGSLL
Sbjct: 341 DEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLA 400
Query: 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
C G ++LAE V K VEL P D YV SN+YA +WD A R M+ RG++K
Sbjct: 401 ACRTQGDVELAEKVMKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKN 460
Query: 434 PGWSFVE 440
+S +E
Sbjct: 461 LAFSSIE 467
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 122/287 (42%), Gaps = 63/287 (21%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVK----------------- 53
G +DY+ V + + WNT+I GY K+ + + ++ LF K
Sbjct: 140 GKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFV 199
Query: 54 --------------MLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
M AGV PD +T + A L L + VH + K + ++
Sbjct: 200 KKECYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVK 259
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
+ NSLI MY CG I AR+VFDGM + VSWNS++ G+A G
Sbjct: 260 VLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNG---------------- 303
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQG-RMML 218
L D +AL F M+ G + N V+ S L AC+H G +D+G ++
Sbjct: 304 ------LAD---------KALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFA 348
Query: 219 RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
D S + L+D+Y++ G +KEA V + ++V++
Sbjct: 349 DIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVL 395
>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 155/415 (37%), Positives = 244/415 (58%), Gaps = 29/415 (6%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN VI Y+K P +++++ ++ + D+ P + KA G+++ +L +H +
Sbjct: 127 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 186
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW----NSMLDGYAKCGEMN 146
K G + D+F+ N+L+ MYG C + YAR VFD M + VSW ++LD YAKCG +
Sbjct: 187 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLG 246
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
+ARQ+F + ++ VVSW+A+I G ++ +E +F M++ NE+T+
Sbjct: 247 LARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITM-------- 298
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
L++ R+ + + L T+L+DMYAKCG I A +F +E D+ +W
Sbjct: 299 ----LNKERVEVDCI----------LNTALVDMYAKCGDINAAGRLF--IEAISRDICMW 342
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF-KSLG 325
NA+I G AMHG+ +E+L++F EM+ G+ P++ITF+GLL AC+H GLV E F K +
Sbjct: 343 NAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVH 402
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
G+VP+ EHY CMVD L RAG + EA+E I MP++P + G+L+ C H L E
Sbjct: 403 TFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGE 462
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ +L+E++P++ G V +SN+YA RW +A R+ M+T G+KK PG S +E
Sbjct: 463 LAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIE 517
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 122/297 (41%), Gaps = 57/297 (19%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + ++ + L+ + W +I G +S + LF++M + P+ +T
Sbjct: 243 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEIT----- 297
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ K E D ++ +L+ MY CGDI A +F ++
Sbjct: 298 -----------------MLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDIC 340
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
WN+++ G+A + GY +EAL IF EM G
Sbjct: 341 MWNAIITGFA--------------------------MHGY-----GEEALDIFAEMERQG 369
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
K N++T + +L AC+H G + +G+ + M+ GL + ++D+ + G + EA
Sbjct: 370 VKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEA 429
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ + + + ++W A++ +H L Q++ I P+ + L+S
Sbjct: 430 HEMIKSMPI-KPNTIVWGALVAACRLHK--NPQLGELAATQLLEIEPENCGYNVLMS 483
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 11/190 (5%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I+ + ++ + I WN +I G++ +++ +F +M R GV P+ +T+ L
Sbjct: 322 GDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLL 381
Query: 71 KASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK-M 128
A + ++ T G + ++ + G G + A E+ MP K
Sbjct: 382 HACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPN 441
Query: 129 SVSWNSM-----LDGYAKCGEMNMARQVFELMPERNVVSWSALIDG-YVKCGDYKEALVI 182
++ W ++ L + GE+ A Q+ E+ PE ++ L+ Y + +A +
Sbjct: 442 TIVWGALVAACRLHKNPQLGEL-AATQLLEIEPEN--CGYNVLMSNIYAAANRWSDAAGV 498
Query: 183 FEEMRDVGSK 192
+ M+ VG K
Sbjct: 499 RKTMKTVGMK 508
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 160/507 (31%), Positives = 268/507 (52%), Gaps = 74/507 (14%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A S G+I ++ +V L P++F WN +IRGYS++ + ++ ++ KM A VSPD T
Sbjct: 62 ASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFT 121
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG-- 123
+P L KA G L+ ++ VHAQ+ + G+E+D+F+ N LI +Y C + AR VF+G
Sbjct: 122 FPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLP 181
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNV----VSWSALIDG---------- 169
+P + VSW +++ YA+ GE A ++F M + +V V+ ++++
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQG 241
Query: 170 -------------------------YVKCGDYKEALVIFEEMR----------------- 187
Y KCG A ++F++M+
Sbjct: 242 RSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301
Query: 188 --------------DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
+ + + +++ S + ACA +G+L+Q R M Y+ + +
Sbjct: 302 GFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFIS 361
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
++LIDM+AKCG+++ A VF DV++W+AMI G +HG +E++ L+ M+ G
Sbjct: 362 SALIDMFAKCGSVECARSVFD--RTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDG 419
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAY 353
+ P+++TFLGLL AC H G+V E W+FF + + P+ +HYAC++D L RAG + +AY
Sbjct: 420 VHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQAY 479
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413
E I MP++P ++ G+LL+ C H ++L + ++L + P + G YV LSN+YA +
Sbjct: 480 EVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAAR 539
Query: 414 RWDEARTTREAMETRGVKKYPGWSFVE 440
WD R M+ +G+ K G S+VE
Sbjct: 540 LWDRVAEVRVRMKEKGLNKDVGCSWVE 566
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 105/396 (26%), Positives = 173/396 (43%), Gaps = 79/396 (19%)
Query: 57 AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
+G+ D + ++ + R+ +HA++ G + F+ LIH S GDI +
Sbjct: 16 SGIHSDSFYASLIDSSTHKAQLRQ----IHARLLVLGLQFSGFLITKLIHASSSYGDITF 71
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAK--------------------------------CG- 143
AR+VFD +P WN+++ GY++ CG
Sbjct: 72 ARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGG 131
Query: 144 --EMNMAR----QVFELMPERNV---------------------------------VSWS 164
+ M R QVF L E +V VSW+
Sbjct: 132 LSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWT 191
Query: 165 ALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK 224
A++ Y + G+ EAL IF +MR + K + V LVSVL A L L+QGR + ++
Sbjct: 192 AIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKM 251
Query: 225 GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLE 284
GL L SL MYAKCG + A I+F ++ ++++WNAMI G A +GF K++++
Sbjct: 252 GLETEPDLLISLNTMYAKCGQVATAKILFDKMKS--PNLILWNAMISGYAKNGFAKDAID 309
Query: 285 LFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS 344
LF EM + PD I+ +SACA G + +A + + + + + ++D +
Sbjct: 310 LFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFA 369
Query: 345 RAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
+ G V E + L+ + +++ G HG+
Sbjct: 370 KCGSV-ECARSVFDRTLDRDVVVWSAMIVGYGLHGQ 404
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 165/435 (37%), Positives = 239/435 (54%), Gaps = 7/435 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + + L ++ + WN +I GY +++ +F KM G+ D TY +
Sbjct: 239 GELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVL 298
Query: 71 KASGRLAKRELAVAVHAQIAKT----GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
A VHA I +T + L ++N+L +Y CG + AR+VF+ MP
Sbjct: 299 SACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPV 358
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
K VSWN++L GY G ++ A+ FE MPERN+++W+ +I G + G +E+L +F M
Sbjct: 359 KDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRM 418
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ G + + + ACA L AL GR + ++ G +L +LI MYAKCG +
Sbjct: 419 KSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVV 478
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ A +F + D + WNAMI L HG ++LELF M I PD ITFL +LS
Sbjct: 479 EAAHCLF--LTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLS 536
Query: 307 ACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
C+H GLV E +FKS+ G G+ P +HYA M+D L RAG+ +EA + I MP+EP
Sbjct: 537 TCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGP 596
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
+ +LL GC HG +DL ++L EL P HDG YV LSN+YA RWD+ R+ M
Sbjct: 597 PIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLM 656
Query: 426 ETRGVKKYPGWSFVE 440
+GVKK PG S++E
Sbjct: 657 RDKGVKKEPGCSWIE 671
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 119/415 (28%), Positives = 196/415 (47%), Gaps = 52/415 (12%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVA-VHAQI 89
+N +I GYS + + +I LF +LR G PD+ T+ + A + + E +H +
Sbjct: 117 YNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAV 176
Query: 90 AKTGYESDLFISNSLIHMYGSCGD---------IVYAREVFDGMPTKMSVSWNSMLDGYA 140
K+G + N+L+ ++ C + AR++FD M + +SW +M+ GY
Sbjct: 177 VKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYV 236
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
+ GE++ ARQ + M E+ VV+W+A+I GYV G + EAL +F +M +G + +E T S
Sbjct: 237 RNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTS 296
Query: 201 VLCACAHLGALDQGRMMLRYMIDK----GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
VL ACA+ G G+ + Y++ L +L + +L +Y KCG + EA VF+ +
Sbjct: 297 VLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQM 356
Query: 257 -----------------------------EKHQSDVLIWNAMIGGLAMHGFVKESLELFT 287
E + ++L W MI GLA +GF +ESL+LF
Sbjct: 357 PVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFN 416
Query: 288 EMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347
M+ G P + F G + ACA +M L + G ++ ++ G
Sbjct: 417 RMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCG 476
Query: 348 QVTEAYEFICQMPLEPTAS---MLGSLLTGCMNHG--KLDLAEIVGKKLVELQPD 397
V A+ MP + S M+ +L G HG L+L E++ K+ ++ PD
Sbjct: 477 VVEAAHCLFLTMPYLDSVSWNAMIAAL--GQHGHGAQALELFELMLKE--DILPD 527
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 164/366 (44%), Gaps = 54/366 (14%)
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
+A VHA + +G++ +I N LI +Y D+V A +FD + V+ +++ ++
Sbjct: 33 IARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHS 92
Query: 141 KCGEMNMARQVFELMPE--RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
G N+AR++F P R+ V ++A+I GY D A+ +F ++ G + + T
Sbjct: 93 SAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTF 152
Query: 199 VSVL------------CACAHLGALDQGRMMLRYMIDKGLSLTLPLQ------------- 233
SVL C H + G + +++ LS+ +
Sbjct: 153 TSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAA 212
Query: 234 ----------------TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
T++I Y + G + A G+ + V+ WNAMI G HG
Sbjct: 213 ARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMT--EKLVVAWNAMISGYVHHG 270
Query: 278 FVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYA 337
F E+LE+F +M ++GI DE T+ +LSACA+ G + + + P +
Sbjct: 271 FFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSL 330
Query: 338 CMVDALS----RAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
+ +AL+ + G+V EA + QMP++ S ++L+G +N G++D A K E
Sbjct: 331 SVNNALATLYWKCGKVDEARQVFNQMPVKDLVSW-NAILSGYVNAGRIDEA----KSFFE 385
Query: 394 LQPDHD 399
P+ +
Sbjct: 386 EMPERN 391
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 167/442 (37%), Positives = 257/442 (58%), Gaps = 36/442 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKS-ISLFVKMLRAGV 59
+LSF+ALS GN DY+ K+ S + NP IF +N+VIRG +K P+K I LF M+ G
Sbjct: 28 ILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGY 87
Query: 60 -SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
+P+ T F+ KA + E +HAQI ++G+ S ++ +SL++ Y
Sbjct: 88 PNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFY---------- 137
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
+KC E+ +AR+VF+ + ERN+V WSA++ GY + G E
Sbjct: 138 ---------------------SKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINE 176
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
AL++F EM+ VG + +EV+LV VL ACA +GALD G+ + Y+ + + + L L T+LI+
Sbjct: 177 ALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALIN 236
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MYAKCG I++A +F E D W++MI GLA+HG +++L +F+ M+ P+
Sbjct: 237 MYAKCGCIEKAREIFD--EMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNH 294
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
+TF+G+LSACAHGGLV + ++ S+ + G+ P EHY CMVD L R G + EAY+F
Sbjct: 295 VTFIGILSACAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALI 354
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
+P P + +LL + L AE+V KL+EL+P Y+ L+N+YA + ++
Sbjct: 355 IP-TPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKV 413
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R+ M+ G+K PG + +E
Sbjct: 414 SHVRKMMKENGIKALPGCTSIE 435
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 164/439 (37%), Positives = 240/439 (54%), Gaps = 21/439 (4%)
Query: 3 SFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD 62
S + G ++ + KV + WN +I GY K K+I ++ M GV PD
Sbjct: 122 SIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPD 181
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
+T L + L + + G + ++N+L+ M+ CGDI AR +FD
Sbjct: 182 DVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFD 241
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ + VS ++F+ M E++VV W+A+I G V+ ++AL +
Sbjct: 242 NLEKRTIVS------------------KLFDDMEEKDVVMWNAMIGGSVQAKRSQDALAL 283
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F+EM+ + +E+T++ L AC+ LGALD G + RY+ LSL + L TSL+DMYAK
Sbjct: 284 FQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAK 343
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG I EAL VFHG++ S L + A+IGGLA+HG ++ F EM GI PDEITF+
Sbjct: 344 CGNISEALCVFHGIQTRNS--LTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFI 401
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
GLLSAC HGG++ +F + R + P+ +HY+ MVD L RAG + EA + + MP+
Sbjct: 402 GLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPM 461
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
E A++ G+LL GC HG + L E KKL+EL P G YV L +Y W++A+
Sbjct: 462 EADAAVWGALLFGCRMHGNVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRA 521
Query: 422 REAMETRGVKKYPGWSFVE 440
R M RGV+K PG S +E
Sbjct: 522 RRMMNERGVEKIPGCSSIE 540
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/366 (32%), Positives = 189/366 (51%), Gaps = 45/366 (12%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV- 59
+++F ALS ++Y K+L + NP F WN IRG+S+S+NP ++ + +MLR G
Sbjct: 16 LIAFCALSESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPKDAVLAYKQMLRRGCC 75
Query: 60 --SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYA 117
PDH TYP L K L L + + K E + N+ IHM+ SC
Sbjct: 76 ESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHNASIHMFASC------ 129
Query: 118 REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
GEM AR+VF+ P R++VSW+ LI+GY K G+ +
Sbjct: 130 -------------------------GEMENARKVFDESPVRDLVSWNCLINGYKKIGEGE 164
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
+A+ +++ M G K ++VT++ ++ +CA LG L++G+ Y+ GL +T+PL +L+
Sbjct: 165 KAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALM 224
Query: 238 DMYAKCGAIKEALIVFHGVEK-----------HQSDVLIWNAMIGGLAMHGFVKESLELF 286
DM++KCG I EA +F +EK + DV++WNAMIGG +++L LF
Sbjct: 225 DMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALF 284
Query: 287 TEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA 346
EMQ PDEIT + LSAC+ G + + + + K + +VD ++
Sbjct: 285 QEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKC 344
Query: 347 GQVTEA 352
G ++EA
Sbjct: 345 GNISEA 350
>gi|359485621|ref|XP_003633297.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g10330-like [Vitis
vinifera]
Length = 454
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 165/423 (39%), Positives = 251/423 (59%), Gaps = 15/423 (3%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP-FLAKASGRLAKRELAVA--VHA 87
+N++IRGY P+K++ +F ML P++LT+P + KA+ L + +H
Sbjct: 32 YNSLIRGYLNFVEPHKTLLIFTHMLAHQARPNNLTFPSIIKKAASCLPSLAFMIGTPLHT 91
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
+ K G DLFI SL+ +Y + A VF+ + VS N+MLD K G+M
Sbjct: 92 HVIKRGLWHDLFIQTSLVVLYARLCKVSDACPVFEEISRPCVVSSNAMLDALGKNGDMGS 151
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF------EEMRDVGSKANEVTLVSV 201
A +FE MPER+VVSW+++I+G+ + ++EA+ F E++R K NE T VSV
Sbjct: 152 ALXLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRSCLVKPNEATFVSV 211
Query: 202 LCACAHL---GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
L +C +L GAL QG+ + Y+I + T+ + T+LI +Y K G ++ + +F+G+
Sbjct: 212 LSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGCLENVMKIFNGMV- 270
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
V WNAMI LA +G K++L+LF +M++ G+ PDE+TF+ +++ACA V+
Sbjct: 271 -VKGVCTWNAMISSLACNGREKQALDLFEKMKMKGLCPDEVTFVAVITACARSKFVVLGL 329
Query: 319 YFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
FF+S+ G+VP+ HY C+VD L RAG + EA EFI MP EP A++LG+LL C
Sbjct: 330 GFFQSMRCDFGVVPRMMHYGCVVDLLGRAGLLEEATEFIKSMPFEPDATVLGALLGACKV 389
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
HG ++L VG++L+E QP H GRYV LSN+YA + W A R+AM G+ K P +S
Sbjct: 390 HGAIELGNEVGRRLLEFQPHHCGRYVTLSNIYAGGEIWGHAADWRKAMTEAGISKIPAYS 449
Query: 438 FVE 440
++
Sbjct: 450 MID 452
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 119/287 (41%), Gaps = 42/287 (14%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML------RA 57
AL G++ + + + + W ++I G+ +++ ++I FVKM+
Sbjct: 140 LDALGKNGDMGSALXLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRSC 199
Query: 58 GVSPDHLTYPFLAKASGRL---AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114
V P+ T+ + + L +H I + E +F+ +LI +YG G +
Sbjct: 200 LVKPNEATFVSVLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGCL 259
Query: 115 VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
++F+GM K +WN+M+ A C G
Sbjct: 260 ENVMKIFNGMVVKGVCTWNAMISSLA-CN------------------------------G 288
Query: 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQ 233
K+AL +FE+M+ G +EVT V+V+ ACA + G + M D G+ +
Sbjct: 289 REKQALDLFEKMKMKGLCPDEVTFVAVITACARSKFVVLGLGFFQSMRCDFGVVPRMMHY 348
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
++D+ + G ++EA F + D + A++G +HG ++
Sbjct: 349 GCVVDLLGRAGLLEEA-TEFIKSMPFEPDATVLGALLGACKVHGAIE 394
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 164/440 (37%), Positives = 244/440 (55%), Gaps = 51/440 (11%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+F A G++ Y+ V + P F WNT+IRGYS SK P +++ L+ ML V
Sbjct: 56 LLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVP 115
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
+ T+PFL KA ++ E +HA I K G+ S+++ +NSL
Sbjct: 116 HNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSL---------------- 159
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
L+ Y+K G++ AR +F+ + +R+ EAL
Sbjct: 160 ---------------LNVYSKSGDIKSARLLFDQVDQRDT-----------------EAL 187
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F M+ G K + V LVS L ACA LG LDQG+ + Y+ + + L LIDMY
Sbjct: 188 NLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMY 247
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG ++EA+ VF +E + V +W AMI G A+HG +E+LE F +MQ G+ P+++T
Sbjct: 248 AKCGDLEEAIEVFRKME--EKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMT 305
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F G+L+AC+H GLV EA F+S+ + G P EHY CMVD L RAG + EA E I M
Sbjct: 306 FTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENM 365
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P++P A++ G+LL C HG L+L + +GK L+++ P H GRY+ L++++A W++A
Sbjct: 366 PVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAA 425
Query: 420 TTREAMETRGVKKYPGWSFV 439
R M+ +GV K PG S +
Sbjct: 426 RVRRQMKEQGVSKLPGCSVI 445
Score = 38.1 bits (87), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 106/268 (39%), Gaps = 35/268 (13%)
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA--KCGA 245
+ S++N + +L C+++ L R + M+ GL L + L+ A G+
Sbjct: 11 QLSSESNAAQTLHLLQRCSNMEEL---RQIHGQMLKTGLILDEIPASKLLAFCASPNSGS 67
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
+ A VF + + + +WN MI G + +E+L L+ M + + TF LL
Sbjct: 68 LAYARTVFDRI--FRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLL 125
Query: 306 SACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC+ + E + K G + +++ S++G + A Q+ T
Sbjct: 126 KACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTE 185
Query: 366 SM-----------------LGSLLTGCMNHGKLD----LAEIVGKKLVELQPDHDGRYVG 404
++ L S L C + G LD + + K +E+ P +G
Sbjct: 186 ALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDP-----ILG 240
Query: 405 --LSNVYAIFKRWDEARTTREAMETRGV 430
L ++YA +EA ME +GV
Sbjct: 241 CVLIDMYAKCGDLEEAIEVFRKMEEKGV 268
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 162/442 (36%), Positives = 258/442 (58%), Gaps = 39/442 (8%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRI---FYWNTVIRGYSKS-KNPNKSISLFVKMLRAGVS 60
SA S L I Y+ ++ + + R+ F ++T+IR Y++S ++ + +I + ML G+S
Sbjct: 47 SASSNLDAIPYAMSLVFSVEDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGIS 106
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSC-GDIVYARE 119
P+ +PF+ KA L L AVH + K G++ D+F+ N+++HMY C G + +AR+
Sbjct: 107 PNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARK 166
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
+FD MP V+W +M+ GYA+ G+ A
Sbjct: 167 LFDEMPKLDPVTWTAMIGGYARLGQ-------------------------------SAGA 195
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
+ +F +M+ G ++VT+VSVL AC LGAL+ G+ + Y+ + + T+ L +L+DM
Sbjct: 196 VGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDM 255
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
+AKCG + +AL +F + K ++ W ++I GLAMHG E++ LF EM+ G+ P++I
Sbjct: 256 FAKCGDVDKALGLFRNMSKRT--IVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDI 313
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
F+GLLSAC+H GLV +F + ++ G+VPK EHY CMVD LSRAG VTEA EF+ +
Sbjct: 314 AFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVER 373
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP+EP + +L++ C HG+L L E + K+L+ +P H+ YV LSN+Y W++
Sbjct: 374 MPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKK 433
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R AM +G++K PG + +E
Sbjct: 434 SKIRVAMGKKGIQKVPGSTMIE 455
>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 647
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 169/415 (40%), Positives = 234/415 (56%), Gaps = 4/415 (0%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
IF W +I + ++ +++ +F M R D + A + H
Sbjct: 231 IFTWTAMISCFERNDMFAEALHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHG 290
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
+ + G S L I N LIHMY C D+V AR +FD SWNSM+ GY K G +
Sbjct: 291 LVIRAGLCSLLNIQNVLIHMYSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVEN 350
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
A +F MP+++ VSWS +I G V+ AL +F+ MR G + +EVT+VSV+ AC +
Sbjct: 351 AMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTN 410
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
L AL++G+ + Y+ +TL L TSLIDMY KCG ++ A+ VF+ +E+ + WN
Sbjct: 411 LSALEKGKSVHDYVRQNKCYITLVLGTSLIDMYMKCGYLEAAMDVFNIMEEKGAPC--WN 468
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGIT-PDEITFLGLLSACAHGGLVMEAWYFFKSLG- 325
A+I GLAM+G V +SLE+F+EM+ P+EITF G+LSAC H GLV E +FFK +
Sbjct: 469 AVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEITFTGVLSACRHAGLVEEGRHFFKLMQH 528
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
K +VP HY CMVD L RAG V EA + I MP+ P G+LL C HG+ ++ E
Sbjct: 529 KYQIVPNIRHYGCMVDLLGRAGYVKEAEDLIESMPMSPDVPAWGALLGACWKHGENEVGE 588
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
VG+KLV L P HDG LSN+YA W R++M+ R V K G+S VE
Sbjct: 589 RVGRKLVNLDPRHDGFQTMLSNIYAKEGMWQSVNDLRDSMKQRHVPKVSGYSVVE 643
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 163/352 (46%), Gaps = 44/352 (12%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
I +S ++L + P F NT+++ + P+ + L+ + SPD T+P LA A
Sbjct: 56 IHHSFRLLRLVRCPNAFSCNTLLKAALLAGMPHLCLPLYTSL---PASPDTYTHPILAAA 112
Query: 73 SGRLAKRELAVA--VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A+R+++ V + + G+ DL++ N+L+HMY CG + AR VFD P +V
Sbjct: 113 CA--ARRDVSEGRQVQSHAIRHGFGDDLYLRNALMHMYSVCGCLWDARRVFDAGPVWDAV 170
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERN------------------------------- 159
SWN++L Y G+++ A VF MP+RN
Sbjct: 171 SWNTILAAYVHAGDVDQAVGVFARMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRD 230
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
+ +W+A+I + + + EAL +F MR +E +VSV+ ACA + G +
Sbjct: 231 IFTWTAMISCFERNDMFAEALHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHG 290
Query: 220 YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
+I GL L +Q LI MY+ C + A +F + D WN+MI G +G V
Sbjct: 291 LVIRAGLCSLLNIQNVLIHMYSCCLDVVAARRLFDSGDC--LDQFSWNSMIAGYLKNGHV 348
Query: 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
+ ++ LF+ M D +++ ++S C A F ++ +G+ P
Sbjct: 349 ENAMTLFSAMP----DKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVRP 396
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 128/298 (42%), Gaps = 36/298 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+++ + + S + + W+T+I G ++ + ++++F M GV PD +T +
Sbjct: 346 GHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVI 405
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L+ E +VH + + L + SLI MY CG + A +VF+ M K +
Sbjct: 406 SACTNLSALEKGKSVHDYVRQNKCYITLVLGTSLIDMYMKCGYLEAAMDVFNIMEEKGAP 465
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
WN+++ G A MN G ++L IF EM
Sbjct: 466 CWNAVIVGLA----MN---------------------------GLVTKSLEIFSEMEASS 494
Query: 191 SK-ANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKE 248
+ NE+T VL AC H G +++GR + M K + + ++D+ + G +KE
Sbjct: 495 TAIPNEITFTGVLSACRHAGLVEEGRHFFKLMQHKYQIVPNIRHYGCMVDLLGRAGYVKE 554
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
A + + DV W A++G HG + + ++V + P F +LS
Sbjct: 555 AEDLIESMPM-SPDVPAWGALLGACWKHG--ENEVGERVGRKLVNLDPRHDGFQTMLS 609
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 177/503 (35%), Positives = 264/503 (52%), Gaps = 75/503 (14%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+ +Y+ + + P IF WNT+IRG + + +I + M G P++ T+PF+
Sbjct: 59 FSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFV 118
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA RL +L V +H + K G++ D+F+ SL+ +Y CG + A +VFD +P K
Sbjct: 119 LKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNV 178
Query: 130 VSWNSMLDGYAKCG-------------EMNMARQVF------------------------ 152
VSW +++ GY G EMN+A F
Sbjct: 179 VSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKC 238
Query: 153 --ELMPERNVVSWSALIDGYVKCGDY-------------------------------KEA 179
E+ RNV ++L+D Y KCG+ KEA
Sbjct: 239 IMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEA 298
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP-LQTSLID 238
+ +F +M+ K + T+V VL ACA LGAL+ G + ++D+ L P L T+LID
Sbjct: 299 IDLFLQMQRENVKPDCYTVVGVLSACARLGALELGE-WVSGLVDRNEFLYNPVLGTALID 357
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
+YAKCG++ A VF G++ + D ++WNA+I GLAM+G+VK S LF +++ +GI PD
Sbjct: 358 LYAKCGSMSRAWEVFKGMK--EKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDG 415
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
TF+GLL C H GLV E +F S+ + + P EHY CMVD L RAG + EA++ I
Sbjct: 416 NTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIR 475
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
MP+E A + G+LL C H LAE+ K+L+EL+P + G YV LSN+Y+ +WDE
Sbjct: 476 NMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDE 535
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
A R +M + ++K PG S++E
Sbjct: 536 AAKVRLSMNEKRIQKPPGCSWIE 558
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 92/393 (23%), Positives = 168/393 (42%), Gaps = 88/393 (22%)
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ G D ++ N ++ D Y R +F + WN+M+ G + A +
Sbjct: 39 RFGLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIE 98
Query: 151 VFELMPER---------------------------------------NVVSWSALIDGYV 171
+ LM +V ++L+ Y
Sbjct: 99 FYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYA 158
Query: 172 KCGDYKEALVIFEEMRD---------------VGS----------------KANEVTLVS 200
KCG ++A +F+++ D VG + T+V
Sbjct: 159 KCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVR 218
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
VL AC LG L+ G + + +++ G+ + + TSL+DMYAKCG +++A VF G+ +
Sbjct: 219 VLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMP--E 276
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAWY 319
D++ W AMI G A++G KE+++LF +MQ + PD T +G+LSACA G L + W
Sbjct: 277 KDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWV 336
Query: 320 FFKSLGKRGMVPKSEHY------ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
G+V ++E ++D ++ G ++ A+E M E + ++++
Sbjct: 337 -------SGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMK-EKDRVVWNAIIS 388
Query: 374 GCMNHGKLDLAEIVGKKLVELQPDHDGR-YVGL 405
G +G + ++ + ++ +L DG ++GL
Sbjct: 389 GLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGL 421
>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 632
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 152/437 (34%), Positives = 257/437 (58%), Gaps = 13/437 (2%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFL 69
GN+ + + + WN ++ GY++ P ++I LF ML G V PD T+ +
Sbjct: 199 GNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATV 258
Query: 70 AKASGRLAKRELAVAVHAQIA-KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT-- 126
+ L L+ ++ ++ K G+ + F+ +L+ M+ CG++ A ++F+ +
Sbjct: 259 ISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYK 318
Query: 127 -KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ SV WN+M+ YA+ G++ A+ +F+ MP+R+ VSW+++I GY + G+ +A+ +FEE
Sbjct: 319 YRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEE 378
Query: 186 M--RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
M + K +EVT+VSV AC HLG L G + + + +++ + SLI+MY++C
Sbjct: 379 MISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRC 438
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G++++A+++F E D++ +N +I G A HG ES+EL ++M+ GI PD IT++
Sbjct: 439 GSMQDAVLIFQ--EMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIA 496
Query: 304 LLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
+L+AC+H GL+ E F+S+ P +HYACM+D L RAG++ EA + I MP+EP
Sbjct: 497 ILTACSHAGLLDEGQRLFESIK----FPDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEP 552
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
A + GSLL H +++L E+ KL +++P + G Y LSN+YA RW E R+
Sbjct: 553 HAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRD 612
Query: 424 AMETRGVKKYPGWSFVE 440
M +GVKK G S++E
Sbjct: 613 TMRKQGVKKTTGLSWLE 629
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 91/381 (23%), Positives = 163/381 (42%), Gaps = 54/381 (14%)
Query: 9 YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSK-SKNPNKSISLFVKMLR-AGVSPDHLTY 66
+L Y+C + ++P + + +++ YS+ + +SLF ML+ + P+ Y
Sbjct: 33 FLAPSSYTCHIFHAATHPDVRVFTFMLKYYSQIGVHSQVFVSLFKHMLQHCDIKPNASFY 92
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ K++G + LA + K+GY+ D ++ N ++ +Y
Sbjct: 93 SVMMKSAGSESMLFLA-----HVLKSGYDRDHYVRNGILGIY------------------ 129
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
AK G + AR++F+ MP+R V W+ +I GY KCG+ +EA +F M
Sbjct: 130 -------------AKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVM 176
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
D N +T +++ A G L RM M ++ ++ +++ YA+ GA
Sbjct: 177 GDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPER----SVVSWNAMLSGYAQGGAP 232
Query: 247 KEALIVFHGVEKH---QSDVLIWNAMIGGLAMHGFVKESLELFTEM-QIVGITPDEITFL 302
+E + +F+ + Q D W +I + G S + ++ VG P+
Sbjct: 233 EETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKT 292
Query: 303 GLLSACAHGGLVMEAWYFFKSLG---KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
LL A G + A F+ LG R VP + M+ A +R G + A +M
Sbjct: 293 ALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVP----WNAMISAYARVGDLPSAKHLFDKM 348
Query: 360 PLEPTASMLGSLLTGCMNHGK 380
P T S S++ G +G+
Sbjct: 349 PQRDTVS-WNSMIAGYTQNGE 368
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 134/290 (46%), Gaps = 62/290 (21%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS--PD 62
SA + +G++ + + + WN++I GY+++ K+I LF +M+ + S PD
Sbjct: 330 SAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPD 389
Query: 63 HLTYPFLAKASGRLAKREL---AVAV----HAQIAKTGYESDLFISNSLIHMYGSCGDIV 115
+T + A G L + L AV++ H QI+ + Y NSLI+MY CG +
Sbjct: 390 EVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVY-------NSLINMYSRCGSMQ 442
Query: 116 YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
A +F M T+ VS+N+++ G+A+ G
Sbjct: 443 DAVLIFQEMATRDLVSYNTLISGFAEHGHG------------------------------ 472
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP---L 232
E++ + +M++ G + + +T +++L AC+H G LD+G+ + S+ P
Sbjct: 473 -MESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFE-------SIKFPDVDH 524
Query: 233 QTSLIDMYAKCGAIKEALIVFHG--VEKHQSDVLIWNAMIGGLAMHGFVK 280
+IDM + G ++EA+ + +E H I+ +++ ++H V+
Sbjct: 525 YACMIDMLGRAGRLEEAMKLIQSMPMEPHAG---IYGSLLNATSIHKQVE 571
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 26/198 (13%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G++ + + ++ + +NT+I G+++ + +SI L KM G+ PD +TY
Sbjct: 436 SRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYI 495
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTG---YES----DLFISNSLIHMYGSCGDIVYAREV 120
+ L HA + G +ES D+ +I M G G + A ++
Sbjct: 496 AI-----------LTACSHAGLLDEGQRLFESIKFPDVDHYACMIDMLGRAGRLEEAMKL 544
Query: 121 FDGMPTKMSVS-WNSMLDGYA-----KCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
MP + + S+L+ + + GE+ A+ +F++ P N +++ L + Y G
Sbjct: 545 IQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAK-LFKVEP-HNSGNYALLSNIYASAG 602
Query: 175 DYKEALVIFEEMRDVGSK 192
+KE + + MR G K
Sbjct: 603 RWKEGDKVRDTMRKQGVK 620
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 258/465 (55%), Gaps = 34/465 (7%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S+ G +DY+ KV +S+P +F N ++RGY+ S P + L+ ++ A + PD T+
Sbjct: 42 SFNGGMDYARKVFDGISHPDLFMHNVMVRGYAHSAAPAAAFVLYRRIEAARLKPDSFTFC 101
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYA---------- 117
+L +A L VH + K GY D F+ N+LI+M+ CGD++ A
Sbjct: 102 YLLRACAGLPGSCAGYQVHGAVVKLGYFKDAFVRNALINMHAKCGDLLVAGTLLDEAGER 161
Query: 118 ---------------------REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP 156
R++FD K V WN M+ YAK GEM AR + + P
Sbjct: 162 DVVARSAVIAGHAAKGELDIARQLFDECQHKDLVCWNVMVAAYAKYGEMEKARGLLDRAP 221
Query: 157 ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRM 216
E++VVSW+ +I GY G KEAL + +EMR VG +E T+VS+L CA+LG+L GRM
Sbjct: 222 EKDVVSWNTIITGYTAKGLLKEALEVLDEMRCVGLMPDEATIVSLLSCCANLGSLGTGRM 281
Query: 217 MLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ ++ +++ +L+ MYAKCG ++ A+ VF ++ + DV WN++IGGLA H
Sbjct: 282 IHSLHLEGRPCISILPGNALVSMYAKCGDVQAAMEVFSRMK--ERDVWTWNSIIGGLAFH 339
Query: 277 GFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEH 335
G ++S++ F +M G+ P+EI+FL +L AC+H GLV + +F + R + P + H
Sbjct: 340 GQAEQSVQFFNKMLDEGLCPNEISFLCVLGACSHAGLVEDGQRYFSLMINRYRIEPNARH 399
Query: 336 YACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ 395
Y+C+VD L R+G + EA+ + M EP + +LL C HG + L ++ ++L+++
Sbjct: 400 YSCIVDMLGRSGLLDEAFAIVSSMRCEPAVVIWRTLLGACRIHGDVALGKLARERLLKMN 459
Query: 396 PDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
D G YV LS +YA W T R +M+ RG++K G++ VE
Sbjct: 460 EDASGDYVLLSGIYASCDEWFGVETVRGSMDERGIRKVAGYAQVE 504
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 115/276 (41%), Gaps = 33/276 (11%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A + G ++ + +L + WNT+I GY+ +++ + +M G+ PD
Sbjct: 202 AAYAKYGEMEKARGLLDRAPEKDVVSWNTIITGYTAKGLLKEALEVLDEMRCVGLMPDEA 261
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T L L +H+ + + N+L+ MY CGD+ A EVF M
Sbjct: 262 TIVSLLSCCANLGSLGTGRMIHSLHLEGRPCISILPGNALVSMYAKCGDVQAAMEVFSRM 321
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ +WNS++ G A G+ + Q F
Sbjct: 322 KERDVWTWNSIIGGLAFHGQAEQSVQ-------------------------------FFN 350
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKC 243
+M D G NE++ + VL AC+H G ++ G+ MI++ + + ++DM +
Sbjct: 351 KMLDEGLCPNEISFLCVLGACSHAGLVEDGQRYFSLMINRYRIEPNARHYSCIVDMLGRS 410
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
G + EA + + + + V+IW ++G +HG V
Sbjct: 411 GLLDEAFAIVSSM-RCEPAVVIWRTLLGACRIHGDV 445
>gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays]
Length = 522
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 159/431 (36%), Positives = 240/431 (55%), Gaps = 2/431 (0%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
++ Y+ +++ H P F WNTVIR S P+ +++LFV ML + PD ++P L
Sbjct: 82 DVLYAERLVRHHPRPNSFMWNTVIRALSDGARPDAAVALFVDMLSSPTPPDRRSFPSLLA 141
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A RL + A+H K G D ++ N+ I MY SCG A +F P V+
Sbjct: 142 AYARLGRAGDGEALHGMALKLGLAGDAYVRNATIAMYASCGRADEALALFGQCPELDVVA 201
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
NS++ A+ G ++ AR VF+ MPER V +WSA++ Y + EAL +F M+ G
Sbjct: 202 CNSVIVALARAGRVDEARSVFDAMPERTVATWSAMVSAYARAARCSEALALFSAMQADGM 261
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ N LVSVL CA LGAL QG + Y+ G+++ + T+L+DMY KCG++ +A
Sbjct: 262 EPNANVLVSVLGCCASLGALVQGAWVHEYIDRHGVAMNALVVTALVDMYCKCGSVDDARQ 321
Query: 252 VFHGVEKHQ-SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + + WN+M+ GLA+HG +E++ LF+E++ G++PD +TF+ +L+A H
Sbjct: 322 VFDAARSQGLAKLSSWNSMMQGLAVHGQWREAVALFSELKSYGLSPDNVTFIAVLTAYGH 381
Query: 311 GGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
G+ EA F S+ + G+ P EHY C+VDAL+RAG++ EA + I MP+ P A++ G
Sbjct: 382 SGMPDEAQAAFASMSSEHGVEPGIEHYGCLVDALARAGRLREAEDAIRAMPMAPDAAIWG 441
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL+GC HG +L ++ V P G YV ++V A R M G
Sbjct: 442 ALLSGCRLHGDAELGARAAREAVRCDPRDSGAYVLAASVLARGGDPGRGAGIRGRMREAG 501
Query: 430 VKKYPGWSFVE 440
V K PG S +E
Sbjct: 502 VGKVPGSSMIE 512
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 117/277 (42%), Gaps = 38/277 (13%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
AL+ G +D + V + + W+ ++ Y+++ +++++LF M G+ P+
Sbjct: 208 ALARAGRVDEARSVFDAMPERTVATWSAMVSAYARAARCSEALALFSAMQADGMEPNANV 267
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ L VH I + G + + +L+ MY CG + AR+VFD
Sbjct: 268 LVSVLGCCASLGALVQGAWVHEYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAAR 327
Query: 126 T----KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
+ K+S SWNSM+ G A G+ ++EA+
Sbjct: 328 SQGLAKLS-SWNSMMQGLAVHGQ-------------------------------WREAVA 355
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMY 240
+F E++ G + VT ++VL A H G D+ + M + G+ + L+D
Sbjct: 356 LFSELKSYGLSPDNVTFIAVLTAYGHSGMPDEAQAAFASMSSEHGVEPGIEHYGCLVDAL 415
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
A+ G ++EA + D IW A++ G +HG
Sbjct: 416 ARAGRLREAEDAIRAMPM-APDAAIWGALLSGCRLHG 451
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/354 (21%), Positives = 144/354 (40%), Gaps = 20/354 (5%)
Query: 85 VHAQIAKTGYESD-LFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
+HA + K+G D + S ++ G D++YA + P S WN+++ +
Sbjct: 53 LHAALVKSGLAKDPIAASRAVAFCAGPGRDVLYAERLVRHHPRPNSFMWNTVIRALSDGA 112
Query: 144 EMNMARQVFELM------PERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
+ A +F M P+R S+ +L+ Y + G + + +G +
Sbjct: 113 RPDAAVALFVDMLSSPTPPDRR--SFPSLLAAYARLGRAGDGEALHGMALKLGLAGDAYV 170
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+ + A G D+ + + L + S+I A+ G + EA VF +
Sbjct: 171 RNATIAMYASCGRADEALALFGQCPE----LDVVACNSVIVALARAGRVDEARSVFDAMP 226
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+ V W+AM+ A E+L LF+ MQ G+ P+ + +L CA G +++
Sbjct: 227 ERT--VATWSAMVSAYARAARCSEALALFSAMQADGMEPNANVLVSVLGCCASLGALVQG 284
Query: 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA--SMLGSLLTGC 375
+ + + + G+ + +VD + G V +A + + A S S++ G
Sbjct: 285 AWVHEYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGLAKLSSWNSMMQGL 344
Query: 376 MNHGKLDLAEIVGKKLVE--LQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
HG+ A + +L L PD + ++ + Y DEA+ +M +
Sbjct: 345 AVHGQWREAVALFSELKSYGLSPD-NVTFIAVLTAYGHSGMPDEAQAAFASMSS 397
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 174/496 (35%), Positives = 260/496 (52%), Gaps = 66/496 (13%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A + L + Y+ V + P WNT+I+ + + + ++S F +M G PD T
Sbjct: 71 AHTLLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFT 130
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM- 124
YP + KA K ++H + G + DL++ SLI MYG CG+I AR+VFDGM
Sbjct: 131 YPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMS 190
Query: 125 ------------------------------PTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
P + SWNSML G+ K G+++ AR VF+
Sbjct: 191 DRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVASWNSMLQGFVKMGDLSGARGVFDA 250
Query: 155 MPERNVVSWSALIDGYVKCGDY-------------------------------KEALVIF 183
MPE+NVVS++ +IDGY K GD +AL +F
Sbjct: 251 MPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVF 310
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP-LQTSLIDMYAK 242
EM + K +E LVS++ A A LG L+ + + Y+ + L + +L+DM AK
Sbjct: 311 LEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVIAALLDMNAK 370
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG ++ AL +F EK + DV+++ +MI GL++HG +E++ LF M + G+TPDE+ F
Sbjct: 371 CGNMERALKLFD--EKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFT 428
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+L+AC+ GLV E +F+S+ ++ + P +HYACMVD LSR+G + +AYE I +P
Sbjct: 429 VILTACSRAGLVDEGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPW 488
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
EP A G+LL C +G +L EIV +L EL+P + YV LS++YA +RW +
Sbjct: 489 EPHAGAWGALLGACKLYGDSELGEIVANRLFELEPLNAANYVLLSDIYAAAERWIDVSLV 548
Query: 422 REAMETRGVKKYPGWS 437
R M R V+K PG S
Sbjct: 549 RSKMRERRVRKIPGSS 564
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 161/391 (41%), Gaps = 79/391 (20%)
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLI-HMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
KRE VHA I G E D F+ I + + YA VF + +V WN+++
Sbjct: 41 KREHLEQVHACIIHRGLEQDHFLVFLFISRAHTLLSTLSYASSVFHRVLAPSTVLWNTLI 100
Query: 137 DGYAK--------------------------------CGEMNMARQ-------VFELMPE 157
+ + C AR+ F +
Sbjct: 101 KSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKACSGTCKAREGKSLHGSAFRCGVD 160
Query: 158 RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMM 217
+++ ++LID Y KCG+ +A +F+ M D N V+ ++L +G + + R +
Sbjct: 161 QDLYVGTSLIDMYGKCGEIADARKVFDGMSD----RNVVSWTAMLVGYVAVGDVVEARKL 216
Query: 218 LRYMID----------------------KGLSLTLPLQ-----TSLIDMYAKCGAIKEAL 250
M +G+ +P + T++ID YAK G + A
Sbjct: 217 FDEMPHRNVASWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAKAGDMAAAR 276
Query: 251 IVFH-GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+F +EK DV+ W+A+I G +G ++L +F EM+++ + PDE + L+SA A
Sbjct: 277 FLFDCSLEK---DVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSASA 333
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHY-ACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
G + A + + K + + +H A ++D ++ G + A + + P +
Sbjct: 334 QLGHLELAQWVDSYVSKICIDLQQDHVIAALLDMNAKCGNMERALKLFDEKPRRDVV-LY 392
Query: 369 GSLLTGCMNHGKLDLA-EIVGKKLVE-LQPD 397
S++ G HG+ + A + + L+E L PD
Sbjct: 393 CSMIQGLSIHGRGEEAVNLFNRMLMEGLTPD 423
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 156/433 (36%), Positives = 250/433 (57%), Gaps = 36/433 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + + KV +S + WN++I GYSK ++ +++ LF +M+ AG P+ ++ +
Sbjct: 176 GKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVL 235
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G L +L V + + + F+ ++LIHMYG
Sbjct: 236 GACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYG--------------------- 274
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
KCG++ AR++F+ M +++ V+W+A+I GY + G +EA+ +F++MR
Sbjct: 275 ----------KCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSS 324
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ +++TL+ +L ACA +GALD G+ + Y ++G + + T+L+DMYAKCG++ A
Sbjct: 325 TAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAF 384
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG--ITPDEITFLGLLSAC 308
VF+G+ K + WNAMI LA HG +E+L LF M G ++P++ITF+G+LSAC
Sbjct: 385 RVFYGMPKKNE--VSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSAC 442
Query: 309 AHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
H GLV E F + G+VPK EHY+CMVD SRAG + EA++F+ MP +P +
Sbjct: 443 VHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVI 502
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
LG+LL C +D++E V K L+EL+P + G YV S +YA +RWD++ R M+
Sbjct: 503 LGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQ 562
Query: 428 RGVKKYPGWSFVE 440
+GV K PG S+++
Sbjct: 563 KGVSKTPGCSWID 575
>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g08510-like [Glycine max]
Length = 474
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 166/425 (39%), Positives = 250/425 (58%), Gaps = 4/425 (0%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSK-SKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
VL H S P +F +N +I+ YS ++ ++ SL+ ++ G P+ T+ FL A L+
Sbjct: 2 VLHHSSKPTLFLYNKLIQAYSSHPQHQHRCFSLYSQIRLHGFLPNQHTFNFLFSACTSLS 61
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
L +H K+G+E DLF + +L+ MY G + AR++FD MP + WN+M+
Sbjct: 62 SSSLGQMLHTHFIKSGFEPDLFAATALLDMYAKVGALELARKLFDEMPVRGVPRWNAMMA 121
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDVGSKANEV 196
G A+ G+M+ A ++F MP RNVV W+ +I GY Y +AL +F M ++ G N V
Sbjct: 122 GLARFGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAV 181
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
TLVS+L ACA+L AL+ G+ + Y G ++++MY KCG I A VF+ +
Sbjct: 182 TLVSILPACANLXALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEI 241
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
+ ++ WN+M+ GLA+HG ++LEL+ +M G +PD++TF+GLL AC GG+V +
Sbjct: 242 GSLR-NLCSWNSMVVGLAVHGECCKALELYDQMLGEGTSPDDVTFVGLLLACTQGGMVKK 300
Query: 317 AWYFFKSLGKRG-MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
+ FKS ++PK EHY CMVD L RAGQ+ EAYE I M ++P + + G+LL C
Sbjct: 301 GRHIFKSKTTSFYIIPKLEHYGCMVDLLGRAGQLREAYEVIQSMSMKPDSVIWGALLGAC 360
Query: 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPG 435
HG ++LAEI + L L+P + G YV LSN+YA +WD R+ M+ + K G
Sbjct: 361 SFHGNVELAEIAAESLFVLEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAG 420
Query: 436 WSFVE 440
SF+E
Sbjct: 421 HSFIE 425
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 135/284 (47%), Gaps = 45/284 (15%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDH 63
+ L+ G++D + ++ + + + W T+I GYS +K +K++ LF+ M + G+ P+
Sbjct: 121 AGLARFGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNA 180
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T + A L E+ V A K G+ + + SN+++ MY CG I A VF+
Sbjct: 181 VTLVSILPACANLXALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNE 240
Query: 124 MPTKMSV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ + ++ SWNSM+ G A GE C +AL +
Sbjct: 241 IGSLRNLCSWNSMVVGLAVHGEC---------------------------C----KALEL 269
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR------YMIDKGLSLTLPLQTSL 236
+++M G+ ++VT V +L AC G + +GR + + Y+I K L +
Sbjct: 270 YDQMLGEGTSPDDVTFVGLLLACTQGGMVKKGRHIFKSKTTSFYIIPK-----LEHYGCM 324
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+D+ + G ++EA V + + D +IW A++G + HG V+
Sbjct: 325 VDLLGRAGQLREAYEVIQSMSM-KPDSVIWGALLGACSFHGNVE 367
>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
Length = 533
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 228/365 (62%), Gaps = 12/365 (3%)
Query: 86 HAQIAKTGYESDLFIS---------NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
HA++A LF++ N+++ +Y + GD+ AR VFD MPT+ S SW+ ++
Sbjct: 158 HARLASVPDAESLFVAMPSRTQVSWNAMVVVYVNAGDVSSARRVFDQMPTRDSTSWSVLI 217
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
GY KCG M AR+VF+ MP +N+V+W+A+I+GY + G KE+L +F EM G + +
Sbjct: 218 VGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAA 277
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
T+V V+ A + +G+ + + Y+ K + + T+L+DM+AKCG + EAL F
Sbjct: 278 TMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEALSAFR-- 335
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
E Q D + A+I GLA HG K +L++F MQ + PD ITF+G+L+AC+H GLV +
Sbjct: 336 EIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITFVGVLTACSHAGLVDK 395
Query: 317 AWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
+++++ K GM +++HYAC+VD L RAG++ EA+E + MP+ P LG+LL+ C
Sbjct: 396 GLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEMVQTMPMGPHPGALGALLSAC 455
Query: 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPG 435
HG +++AEIV KL EL+P + G Y+ LSN+YA ++W+EA R M TR K PG
Sbjct: 456 KTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQWEEAERIRSVMRTRLPFKQPG 515
Query: 436 WSFVE 440
S+VE
Sbjct: 516 SSWVE 520
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 108/244 (44%), Gaps = 38/244 (15%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + +V + + W +I GY++S P +S++LF +M AG+ PD T +
Sbjct: 224 GSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVI 283
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A+ ++ ELA V + + K E + + +L+ M+ CG++ A F + +
Sbjct: 284 SAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAY 343
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+ +++ G A G +A QVFE M ++V W
Sbjct: 344 PYTALISGLAAHGHAKLALQVFERMQAQSV--WP-------------------------- 375
Query: 191 SKANEVTLVSVLCACAHLGALDQG----RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ +T V VL AC+H G +D+G M++Y G+ ++DM + G +
Sbjct: 376 ---DPITFVGVLTACSHAGLVDKGLDYWEAMVKYY---GMERRADHYACVVDMLGRAGRL 429
Query: 247 KEAL 250
+EA
Sbjct: 430 EEAF 433
>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 163/466 (34%), Positives = 252/466 (54%), Gaps = 35/466 (7%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G DY+ KV ++ P + W ++I GY +++ +++ SLF++M R +S + T
Sbjct: 46 SRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTIS 105
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ KA RL + + AV+ E D+ N +I YG+ + AR+ FD MP +
Sbjct: 106 SVLKALARLTRFKGGQAVYGFAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPER 165
Query: 128 MSVSWNSMLDGYAKCGEM--------------------------------NMARQVFELM 155
VSW SM+ GY K G+M N AR +F+ M
Sbjct: 166 NVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQM 225
Query: 156 PERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGR 215
P +N+V+WS +I GY + G +AL +FE ++ K +E ++ ++ AC+ LG +D
Sbjct: 226 PMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAE 285
Query: 216 MMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAM 275
++ + L L + TSLIDMYAKCG+I++AL +F H D+L ++ MI LA
Sbjct: 286 SIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMA--HPKDLLCYSTMIAALAN 343
Query: 276 HGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSE 334
HG ++++ LF +MQ I PD +TFLG+L+AC HGGLV E +FK + + G+ P +
Sbjct: 344 HGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEK 403
Query: 335 HYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVEL 394
HYAC+VD L R G + EAY I MP+ P + + G+LL C H + LAE+ +L ++
Sbjct: 404 HYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKI 463
Query: 395 QPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+PD+ G Y+ LSN+YA RW R + V+K G S++E
Sbjct: 464 EPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWIE 509
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 135/342 (39%), Gaps = 67/342 (19%)
Query: 104 LIHMYGSCGDI-----VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
++H+ +C + ++AR + + N +L Y++ G + A +VF+ + +
Sbjct: 5 ILHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQP 64
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGR--- 215
N W++LI GYV+ Y EA +F +MR T+ SVL A A L G+
Sbjct: 65 NAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVY 124
Query: 216 ----------------MML------------RYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
MM+ R D+ + TS+I Y K G +
Sbjct: 125 GFAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMA 184
Query: 248 EALIVFHGV------------------------------EKHQSDVLIWNAMIGGLAMHG 277
EA ++F + + +++ W+ MIGG A +G
Sbjct: 185 EAQVLFDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNG 244
Query: 278 FVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYA 337
++LELF + I PDE LG++SAC+ G++ A + ++ +
Sbjct: 245 QPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFT 304
Query: 338 CMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
++D ++ G + +A + +M +++ NHG
Sbjct: 305 SLIDMYAKCGSIEKALQMF-EMAHPKDLLCYSTMIAALANHG 345
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 146/358 (40%), Positives = 219/358 (61%), Gaps = 4/358 (1%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV-SWNSMLDGYAKCG 143
+H+ + + G+ +D S SL+ Y SCG + AR VFD V SWN M+DGY K G
Sbjct: 93 LHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKSG 152
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
++ AR++F++MP RNVVSW+ +I Y + +EA+ +F M+ G + + V L+SVL
Sbjct: 153 DLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLS 212
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
AC LG +D G + R+++ +GL +PL ++IDMY KCG++K+AL VF G+E Q +
Sbjct: 213 ACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGME--QKSI 270
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV-MEAWYFFK 322
+ W MI G A+HG E++ELF M+ ++P++ITFL +LS C+H GL + WYF
Sbjct: 271 VTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKT 330
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ + + P+ EHY CM+D L RAG + EA I MP + A++ G+LL HG +
Sbjct: 331 MVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTE 390
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L E L+EL+P + G Y+ LSN+YA +RWD R R +M RG++ PG S ++
Sbjct: 391 LGEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSID 448
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 33/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + ++ + + W VI Y++ K P ++I +F +M G+ PD + +
Sbjct: 152 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVL 211
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G L +L VH + + G ++ + N++I MY CG + A EVF+GM K V
Sbjct: 212 SACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIV 271
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W +M+ G+A G + A ++F M + NV
Sbjct: 272 TWTTMIAGFALHGLGSEAVELFRRMEKENV------------------------------ 301
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
N++T ++VL C+H+G D GR + M+ + + + +ID+ + G + EA
Sbjct: 302 -SPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEA 360
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
+ + +++ IW A++ HG
Sbjct: 361 RGLIQDM-PFKANAAIWGALLAAARTHG 387
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/186 (19%), Positives = 80/186 (43%), Gaps = 7/186 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + +V + I W T+I G++ ++++ LF +M + VSP+ +T+ +
Sbjct: 253 GSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVL 312
Query: 71 KASGRLAKRELAV-AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+ +L +++ + + +I + G G ++ AR + MP K +
Sbjct: 313 SVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKAN 372
Query: 130 VS-WNSMLDGYAKCGEMNMARQ----VFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ W ++L G+ + Q + EL P N ++ L + Y + + +
Sbjct: 373 AAIWGALLAAARTHGDTELGEQALLHLIELEPH-NSGNYILLSNIYAEQERWDAVRELRI 431
Query: 185 EMRDVG 190
MRD G
Sbjct: 432 SMRDRG 437
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 165/460 (35%), Positives = 264/460 (57%), Gaps = 22/460 (4%)
Query: 1 MLSFSALSYLG--NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNK--SISLFVKMLR 56
+L F A S L ++DY+ K+ + + F WNT+IRG+S+S +I+LF +M+
Sbjct: 61 ILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMS 120
Query: 57 AG-VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV 115
V P+ T+P + KA + K + +H K G+ D F+ ++L+ MY CG +
Sbjct: 121 DEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMK 180
Query: 116 YAREVF--DGMPTKMSVS------------WNSMLDGYAKCGEMNMARQVFELMPERNVV 161
AR +F + + M V WN M+DGY + G+ AR +F+ M +R+VV
Sbjct: 181 DARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVV 240
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
SW+ +I GY G +K+A+ +F EM+ + N VTLVSVL A + LG+L+ G + Y
Sbjct: 241 SWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYA 300
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
D G+ + L ++LIDMY+KCG I++A+ VF + + +V+ W+AMI G A+HG +
Sbjct: 301 EDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPR--ENVITWSAMINGFAIHGQAGD 358
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA-WYFFKSLGKRGMVPKSEHYACMV 340
+++ F +M+ G+ P ++ ++ LL+AC+HGGLV E YF + + G+ P+ EHY CMV
Sbjct: 359 AIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMV 418
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400
D L R+G + EA EFI MP++P + +LL C G +++ + V L+++ P G
Sbjct: 419 DLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSG 478
Query: 401 RYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
YV LSN+YA W E R M+ + ++K PG S ++
Sbjct: 479 AYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLID 518
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 146/358 (40%), Positives = 219/358 (61%), Gaps = 4/358 (1%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV-SWNSMLDGYAKCG 143
+H+ + + G+ +D S SL+ Y SCG + AR VFD V SWN M+DGY K G
Sbjct: 97 LHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKSG 156
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
++ AR++F++MP RNVVSW+ +I Y + +EA+ +F M+ G + + V L+SVL
Sbjct: 157 DLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLS 216
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
AC LG +D G + R+++ +GL +PL ++IDMY KCG++K+AL VF G+E Q +
Sbjct: 217 ACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGME--QKSI 274
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV-MEAWYFFK 322
+ W MI G A+HG E++ELF M+ ++P++ITFL +LS C+H GL + WYF
Sbjct: 275 VTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKT 334
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ + + P+ EHY CM+D L RAG + EA I MP + A++ G+LL HG +
Sbjct: 335 MVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTE 394
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L E L+EL+P + G Y+ LSN+YA +RWD R R +M RG++ PG S ++
Sbjct: 395 LGEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSID 452
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 33/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + ++ + + W VI Y++ K P ++I +F +M G+ PD + +
Sbjct: 156 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVL 215
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G L +L VH + + G ++ + N++I MY CG + A EVF+GM K V
Sbjct: 216 SACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIV 275
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W +M+ G+A G A ++F M + NV
Sbjct: 276 TWTTMIAGFALHGLGLEAVELFRRMEKENV------------------------------ 305
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
N++T ++VL C+H+G D GR + M+ + + + +ID+ + G + EA
Sbjct: 306 -SPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEA 364
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
+ + +++ IW A++ HG
Sbjct: 365 RGLIQDM-PFKANAAIWGALLAAARTHG 391
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 7/186 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + +V + I W T+I G++ +++ LF +M + VSP+ +T+ +
Sbjct: 257 GSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVL 316
Query: 71 KASGRLAKRELAV-AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+ +L +++ + + +I + G G ++ AR + MP K +
Sbjct: 317 SVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKAN 376
Query: 130 VS-WNSMLDGYAKCGEMNMARQ----VFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ W ++L G+ + Q + EL P N ++ L + Y + + +
Sbjct: 377 AAIWGALLAAARTHGDTELGEQALLHLIELEPH-NSGNYILLSNIYAEQERWDAVRELRI 435
Query: 185 EMRDVG 190
MRD G
Sbjct: 436 SMRDRG 441
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 174/465 (37%), Positives = 258/465 (55%), Gaps = 51/465 (10%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++SF +LS LG++ Y+ + + F NT+IR Y+KS P K+I L+ M R +
Sbjct: 44 IISFLSLSPLGSLVYAQAIFEDTTMDNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIK 103
Query: 61 PDHLTYPFLAKASGR--------LAKRELAVA-----VHAQIAKTGYESDLFISNSLIHM 107
DH YPF KA R + +L +A +H ++ + G + D FI NSL+++
Sbjct: 104 SDHFMYPFGLKACARVLWCNEGDIKCTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYL 163
Query: 108 YGSCGDIVYAREVFD-------------------------------GMPTKMSVSWNSML 136
Y CG + AR VFD MP K VSWN ++
Sbjct: 164 YSQCGFLDLARRVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGSMPGKNVVSWNMLI 223
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
Y + G++ A+ VF+ MPER+ VSW+++I GYV+ DY AL +F EM +A ++
Sbjct: 224 ARYIRLGKIEDAKAVFQEMPERDAVSWNSMIAGYVQIKDYARALALFREMEIANVEATDI 283
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
TL+SVL ACA GAL+ GR + + + + L +L+DMYAKCG + A VF +
Sbjct: 284 TLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVFSEL 343
Query: 257 E-KHQSDVLIWNAMIGGLAMHGFVKESLELFT--EMQIVGITPDEITFLGLLSACAHGGL 313
+ KH S WNAMI LA+HG+ +E+L LF+ EM + G P+ +TF+G+L AC+H GL
Sbjct: 344 KMKHIS---CWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIGVLIACSHKGL 400
Query: 314 VMEAWYFF-KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
V E FF + + + ++P +HY CMVD LSR G + EA+ I MP E + + +LL
Sbjct: 401 VDEGRKFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFEANSVLWRTLL 460
Query: 373 TGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
C H +DLAE ++L +++P DG YV LSN+YA +RW++
Sbjct: 461 GACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYAEAQRWND 505
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 158/387 (40%), Positives = 237/387 (61%), Gaps = 8/387 (2%)
Query: 59 VSPDHLTYPFLAKASGRLAKR--ELAVAVHAQIAKTGYES-DLFISNSLIHMYGSCGDIV 115
+ P+H+T+ L L + L +HA K G ++ +L + +L+ MY CG +
Sbjct: 6 IDPNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVE 65
Query: 116 YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
+R FD + K S SWN+M+DG+ + G++ A +VF+ MPER V+SW+ LI+G+VK G
Sbjct: 66 LSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGL 125
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
++EAL F +M+ + + VT+V+VL ACA+LGAL G + RY + KGL + + S
Sbjct: 126 FEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNS 185
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLI-WNAMIGGLAMHGFVKESLELFTEMQIVGI 294
LID+Y++CGAI+ A VF EK L+ WN++IGGLA +GF +E+LE F MQ G
Sbjct: 186 LIDLYSRCGAIELARQVF---EKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGF 242
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAY 353
P++++F G L+AC+H GLV E +F + + + P+ EHY C+VD SRAG++ +A
Sbjct: 243 KPNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAM 302
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413
+ MP++P ++GSLL C G ++LAE + LV L P D YV LSN+YA
Sbjct: 303 SVVQNMPMKPNEVVVGSLLAACRTRGDVELAERLMNYLVHLDPGADSNYVLLSNIYAAVG 362
Query: 414 RWDEARTTREAMETRGVKKYPGWSFVE 440
RWD A R M+ G++K PG+S +E
Sbjct: 363 RWDGACKQRMTMKALGIQKKPGFSSIE 389
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 120/288 (41%), Gaps = 65/288 (22%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG------------ 58
G+++ S L F WNT+I G+ ++ ++I +F +M G
Sbjct: 62 GHVELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFV 121
Query: 59 -------------------VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
V PD +T + A L L + VH K G ++
Sbjct: 122 KMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVK 181
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
I NSLI +Y CG I AR+VF+ M + VSWNS++ G A
Sbjct: 182 ICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAA------------------ 223
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
+G+ +EAL F+ M+ G K N+V+ L AC+H G +D+G
Sbjct: 224 --------NGFT-----EEALEHFDLMQKQGFKPNDVSFTGALTACSHTGLVDEGLKYFD 270
Query: 220 YM--IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
M + K +S + ++D+Y++ G +++A+ V + ++V++
Sbjct: 271 IMERVHK-ISPRIEHYGCIVDLYSRAGRLEDAMSVVQNMPMKPNEVVV 317
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 166/448 (37%), Positives = 251/448 (56%), Gaps = 15/448 (3%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SA + LG+ D++ ++ + + + R + S ++I++F M+ GV PD+
Sbjct: 53 LSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDN 112
Query: 64 LTYPFLAKASGRL-------AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
+ LA A G A+R +HA I +G E D+F+S LI +YG CG +
Sbjct: 113 VA---LAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAV 169
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
+R VFD MP++ +++WN+ML YA+ G+++ A ++F MP R+VVSW+ ++ GY G
Sbjct: 170 SRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRC 229
Query: 177 KEALVIFEEMRDVGSKA---NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
+EAL +F +M S A N T+ ++L ACA G L+ G + Y+ ++ L
Sbjct: 230 REALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLD 289
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
LIDMY KCG+I AL VF + + D+ W +I GLAMHG ++L +F MQ G
Sbjct: 290 RCLIDMYCKCGSIDNALQVFEKAPR-KRDLFSWTTVICGLAMHGRATDALRMFDMMQDNG 348
Query: 294 ITPDEITFLGLLSACAHGGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352
I PD++T +G+L+ACAHGGLV E YF+ K + PK EHY CM+D L R G++ EA
Sbjct: 349 ICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEA 408
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412
Y I MP++P + G+ L+ C HG ++L +I ++L L PD V LS++YA
Sbjct: 409 YSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKA 468
Query: 413 KRWDEARTTREAMETRGVKKYPGWSFVE 440
+ W R M + VKK PG S +E
Sbjct: 469 QDWIGLARERREMNSMQVKKTPGCSSIE 496
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 119/284 (41%), Gaps = 36/284 (12%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
++L YA G + AR++F+ MPE+ +V +A+ +V G +A+ +F +M G
Sbjct: 50 TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 109
Query: 193 ANEVTLVSVLCACAHLGA----LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
+ V L L AC G+ + G+ + ++ G+ + + T LI +Y +CG +
Sbjct: 110 PDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAV 169
Query: 249 ALIVF---------------HGVEKH--------------QSDVLIWNAMIGGLAMHGFV 279
+ VF H +H + DV+ WN ++ G + G
Sbjct: 170 SRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRC 229
Query: 280 KESLELFTEM---QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHY 336
+E+L LF +M + P+ T +L ACA G + + + + M
Sbjct: 230 REALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLD 289
Query: 337 ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
C++D + G + A + + P + +++ G HG+
Sbjct: 290 RCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGR 333
>gi|357473845|ref|XP_003607207.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508262|gb|AES89404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 180/492 (36%), Positives = 262/492 (53%), Gaps = 59/492 (11%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLS----NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR 56
++ FSALS GN+ ++ + H S NP F NT+IR +S S P +++ ++ +ML
Sbjct: 44 LIFFSALSPFGNLSHAYSLFQHSSILIHNP--FISNTMIRAFSHSCFPLQALLIYNQMLI 101
Query: 57 AGVSPDHLTYPFLAKASGRLAK----------RELAVA------VHAQIAKTGYESDLFI 100
V D T F+ KA R K L V +H ++ K G+++D +
Sbjct: 102 NNVVSDSYTCNFVLKACSRAYKLIQESGSCDDDNLVVVYNKGTEIHCRVIKIGFQNDPSV 161
Query: 101 SNSLIHMYGSCGDIVYAREVFDG-------------------------------MPTKMS 129
NSL++ Y CG + AR +FD MP K
Sbjct: 162 QNSLLYFYSQCGLVSVARHLFDQIKDTSLVSWNIMISAYDLVNDYESADYLLELMPCKTV 221
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSWN+++ Y + G++ AR+VF MPERN VSW+++I G V DY AL +F EM++
Sbjct: 222 VSWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNA 281
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G K EVTL+S+L ACA GAL+ G + + + L +L++MY KCG + A
Sbjct: 282 GVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLA 341
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV---GITPDEITFLGLLS 306
+F+G++ V WNAM+ GLA+HG+ +E +LFTEM+ I PD +TF+G+L
Sbjct: 342 WEIFNGMK--MKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLV 399
Query: 307 ACAHGGLVMEA-WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC+H GLV +A WYF + + +VP S+HY CMVD LSR G + EAY+ I P + +
Sbjct: 400 ACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSV 459
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
+ +LL C +LAEI K+L +L+ DG YV LSN+YA RWDE R M
Sbjct: 460 VLWRTLLGACRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEM 519
Query: 426 ETRGVKKYPGWS 437
+ V + G+S
Sbjct: 520 DYLHVPRQAGYS 531
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 150/374 (40%), Positives = 233/374 (62%), Gaps = 4/374 (1%)
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+A+ L +R L +H+ + +TG+ SD +S+SL+ +Y +CG + AR VFD M +
Sbjct: 83 VARLPPHLLRRSLLGQLHSLLLRTGHVASDAHVSSSLVQLYCTCGHVADARSVFDEMAVR 142
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
V+WN M+ GY K G+ AR++F+ MPERNVVSW+ +I GY + ++A+ +F M+
Sbjct: 143 DVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQ 202
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G +A+ V L+SVL AC LGA+D G + R+++ +GL +PL S+IDMY KCG I+
Sbjct: 203 VEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQEIPLMNSIIDMYMKCGCIE 262
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
+A+ VF G+E + V+ W +I G A+HG +++E+F M+ + P+ +TFL +LSA
Sbjct: 263 KAVEVFEGME--EKSVVTWTTLIAGFALHGLGLQAVEMFCRMERENMAPNAVTFLAILSA 320
Query: 308 CAHGGLV-MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H GL + WYF + + + P+ EHY CMVD L RAG + EA + + MPL+ A+
Sbjct: 321 CSHVGLTDLGRWYFNIMVSQYRIKPRVEHYGCMVDLLGRAGCLKEAQDLVKNMPLKANAA 380
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ G+LL HG L E L+EL+P++ G Y+ LSN++A +RW + R+AM
Sbjct: 381 IWGALLAAARTHGDAGLGEQALLHLIELEPNNSGNYILLSNIFAEQERWGDVSKLRKAMR 440
Query: 427 TRGVKKYPGWSFVE 440
RG++ PG S +E
Sbjct: 441 ERGLRNVPGASSIE 454
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 120/299 (40%), Gaps = 64/299 (21%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKS----------------------------- 41
G++ + V ++ + WN +I GY K+
Sbjct: 127 GHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYA 186
Query: 42 --KNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
K P K++ +F +M G+ D + + A G L +L VH + + G ++
Sbjct: 187 QMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQEIP 246
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
+ NS+I MY CG I A EVF+GM K V+W +++ G+A G A ++F M N
Sbjct: 247 LMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFCRMEREN 306
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
+ N VT +++L AC+H+G D GR
Sbjct: 307 MAP-------------------------------NAVTFLAILSACSHVGLTDLGRWYFN 335
Query: 220 YMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
M+ + + + ++D+ + G +KEA + + +++ IW A++ HG
Sbjct: 336 IMVSQYRIKPRVEHYGCMVDLLGRAGCLKEAQDLVKNMPL-KANAAIWGALLAAARTHG 393
>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 595
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 175/488 (35%), Positives = 259/488 (53%), Gaps = 69/488 (14%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLF-VKMLRAGVSPDHLTYPFLAKASGRLA 77
+ HL +P F+ NT+IR Y++ + ++ + KML V P+H T+P L K +
Sbjct: 62 LFDHLHHPDAFHCNTIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIG 121
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYG--------------SC------------ 111
+ HA+I K G+ SDLF NSLI MY SC
Sbjct: 122 SFREGLKGHARIVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSMID 181
Query: 112 -----GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSAL 166
G+I AR+VF+ MP + +SWN ++ GY G+++ A ++FE +PER+ VSW+ +
Sbjct: 182 GYVKNGEIGAARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSWNCM 241
Query: 167 IDGYVKCGDYKEALVIFEEM----RDV----------------------------GSKA- 193
IDG + G+ A+ F+ M R+V G +A
Sbjct: 242 IDGCARVGNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAV 301
Query: 194 -NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
NE TLVSVL ACA+LG L G + ++ + + L T L+ MYAKCGA+ A V
Sbjct: 302 PNEATLVSVLTACANLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGV 361
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F E V+ WN+MI G +HG ++LELF EM+ G P++ TF+ +LSAC H G
Sbjct: 362 FD--EMPVRSVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTHAG 419
Query: 313 LVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
+VME W++F + + + PK EHY CMVD L+RAG V + E I +P++ +++ G+L
Sbjct: 420 MVMEGWWYFDLMQRVYKIEPKVEHYGCMVDLLARAGLVENSEELIRMVPVKAGSAIWGAL 479
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
L+GC NH +L EIV K+ +EL+P G Y+ LSN+YA RWD+ R ++ +G++
Sbjct: 480 LSGCSNHLDSELGEIVAKRFIELEPQDIGPYILLSNMYAAKGRWDDVEHVRLMIKEKGLQ 539
Query: 432 KYPGWSFV 439
K S V
Sbjct: 540 KEAASSLV 547
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 146/341 (42%), Gaps = 58/341 (17%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I + KV + + + + WN +I GY + + + LF + D +++ +
Sbjct: 187 GEIGAARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPER----DAVSWNCMI 242
Query: 71 KASGRLAKRELAVA----VHAQIAKTGYESDLFISNSLIHMYGSC----GDIVYAREVFD 122
R+ LAV + A + + + ++ + YG C G +V RE
Sbjct: 243 DGCARVGNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAVP 302
Query: 123 GMPTKMSV-------------SW-----------------NSMLDGYAKCGEMNMARQVF 152
T +SV W +L YAKCG M++A+ VF
Sbjct: 303 NEATLVSVLTACANLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVF 362
Query: 153 ELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD 212
+ MP R+VVSW+++I GY G +AL +F EM G + N+ T +SVL AC H G +
Sbjct: 363 DEMPVRSVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTHAGMVM 422
Query: 213 QG----RMMLR-YMIDKGLSLTLPLQTSLIDMYAKCGAIK--EALIVFHGVEKHQSDVLI 265
+G +M R Y I+ + ++D+ A+ G ++ E LI V+ + I
Sbjct: 423 EGWWYFDLMQRVYKIEP----KVEHYGCMVDLLARAGLVENSEELIRMVPVKAGSA---I 475
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
W A++ G + H + L + + + P +I LLS
Sbjct: 476 WGALLSGCSNH--LDSELGEIVAKRFIELEPQDIGPYILLS 514
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 162/460 (35%), Positives = 252/460 (54%), Gaps = 40/460 (8%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
+ + + ++N +IR Y + + ++ +F M G+ PDH TYP + KAS
Sbjct: 93 IFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSED 152
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
+ + +HA + + G + ++F+ N LI MYG CG +V A V D MP + VSWNS++ G
Sbjct: 153 LWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAG 212
Query: 139 YAK----------CGEMNM---------------------------ARQVFELMPERNVV 161
A+ C EM + +++F + +++V
Sbjct: 213 CARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLV 272
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
SW+ +I Y+ EA+ IF +M D + +++ SVL AC L AL GR + Y+
Sbjct: 273 SWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYV 332
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
+ K L L L+ +LIDMYAKCG ++ A VF ++ DV+ W +MI M+G ++
Sbjct: 333 VRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFR--DVVSWTSMISAYGMNGKGRD 390
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMV 340
++ LF+ MQ +G+ PD I F+ +LSAC+H GL+ E Y+FK + + +VP+ EH+ CMV
Sbjct: 391 AVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMV 450
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400
D L RAGQV EAY FI QMP+EP + G+LL+ C + + + + +L +L P+ G
Sbjct: 451 DLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSG 510
Query: 401 RYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
YV LSN+YA RW++ T R M+T+G+KK PG S E
Sbjct: 511 YYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFE 550
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 140/301 (46%), Gaps = 41/301 (13%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
L N+ + ++ L+N + WN +I Y + P +++ +F++M V PD ++ +
Sbjct: 253 LDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASV 312
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A G L+ L +H + + + +L + N+LI M
Sbjct: 313 LPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDM---------------------- 350
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
YAKCG + AR+VF+ M R+VVSW+++I Y G ++A+ +F M+D+
Sbjct: 351 ---------YAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDL 401
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKE 248
G + + VSVL AC+H G LD+GR + M ++ + + ++D+ + G + E
Sbjct: 402 GLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDE 461
Query: 249 ALIVFHGVEKH---QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
A +G K + + +W A++ A + + L Q+ + P++ + LL
Sbjct: 462 A----YGFIKQMPMEPNERVWGALLS--ACRVYSNMIIGLLAADQLFQLCPEQSGYYVLL 515
Query: 306 S 306
S
Sbjct: 516 S 516
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 128/270 (47%), Gaps = 13/270 (4%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ YA CGE R +F+ +P++NVV ++ +I YV Y +AL++F+ M G +
Sbjct: 77 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
T VL A + L G + ++ GL L + + LI MY KCG + EA V
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 196
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL- 313
+ DV+ WN+++ G A +G ++LE+ EM+++G+ PD T LL A + L
Sbjct: 197 QMPCR--DVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLD 254
Query: 314 -VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM---PLEPTASMLG 369
V F L + +V + M+ EA + QM ++P A +
Sbjct: 255 NVSFVKEMFMKLANKSLVS----WNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIA 310
Query: 370 SLLTGCMNHGKLDLAEIVGKKLV--ELQPD 397
S+L C + L L + + +V LQP+
Sbjct: 311 SVLPACGDLSALLLGRRIHEYVVRKRLQPN 340
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 82/190 (43%), Gaps = 11/190 (5%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++Y+ +V + + W ++I Y + ++SLF +M G++PD + + +
Sbjct: 355 GCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVL 414
Query: 71 KA---SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
A +G L + + + K + F+ ++ + G G + A MP +
Sbjct: 415 SACSHAGLLDEGRYYFKLMTEECKIVPRIEHFV--CMVDLLGRAGQVDEAYGFIKQMPME 472
Query: 128 MSVS-WNSMLDGYAKCGEMNM----ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ W ++L M + A Q+F+L PE++ + L + Y K G +++ +
Sbjct: 473 PNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGY-YVLLSNIYAKAGRWEDVTTV 531
Query: 183 FEEMRDVGSK 192
M+ G K
Sbjct: 532 RSIMKTKGIK 541
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 168/462 (36%), Positives = 261/462 (56%), Gaps = 26/462 (5%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPN---KSISLFVKMLRA 57
++ F A S +IDY+ V + P F WNT++R +++ + + +++ LF ML
Sbjct: 57 VIKFCAFSS-RDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCD 115
Query: 58 G-VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI-- 114
G V P+ T+P + KA R ++ +H I K G+ D F+ ++L+ MY C +
Sbjct: 116 GRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMED 175
Query: 115 ---VYAREV--FDGMPTKMS----------VSWNSMLDGYAKCGEMNMARQVFELMPERN 159
++ + V FDG +M V WN M+DG + G++ A+ +F+ MP R+
Sbjct: 176 AYSLFCKNVVDFDG-SCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRS 234
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
VVSW+ +I GY + G + EA+ +F+EM+ N VTLVSVL A A +GAL+ G+ +
Sbjct: 235 VVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHL 294
Query: 220 YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
Y + + L ++L+DMY+KCG+I +AL VF + K + + W+A+IG AMHG
Sbjct: 295 YAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKR--NAITWSAIIGAFAMHGRA 352
Query: 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYAC 338
++++ F M G+TP+++ ++G+LSAC+H GLV E FF + K G+ P+ EHY C
Sbjct: 353 EDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGC 412
Query: 339 MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398
MVD L RAG + EA E I MP+EP + +LL C H L + E V + L+EL P
Sbjct: 413 MVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHD 472
Query: 399 DGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
G YV LSN+YA W+ R M+ ++K PG S++E
Sbjct: 473 SGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIE 514
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 93/392 (23%), Positives = 154/392 (39%), Gaps = 89/392 (22%)
Query: 43 NPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISN 102
NPN++++ + P L+ PF + + R K+ +HA KTG D +
Sbjct: 7 NPNRTLNF------SPQPPLILSKPFTSCKTPRDLKQ-----LHAIFIKTGQIQDPLTAA 55
Query: 103 SLIHMYG-SCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV 161
+I S DI YAR VF MP WN++L A+ + ++
Sbjct: 56 EVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQ------------- 102
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMR-DVGSKANEVTLVSVLCACAHLGALDQGRMMLRY 220
EAL++F M D K N T SVL ACA L +G+ +
Sbjct: 103 ---------------SEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGL 147
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEA-------LIVFHG-----VEKHQSD------ 262
++ G + ++L+ MY C +++A ++ F G ++K + D
Sbjct: 148 IVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLW 207
Query: 263 ---------------------------VLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
V+ WN MI G A +G E++ LF EMQ I
Sbjct: 208 NIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNID 267
Query: 296 PDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
P+ +T + +L A A G L + W + GK + + +VD S+ G + +A +
Sbjct: 268 PNYVTLVSVLPAIARIGALELGKWIHLYA-GKNKVEIDDVLGSALVDMYSKCGSIDKALQ 326
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
+P + A +++ HG+ + A I
Sbjct: 327 VFETLP-KRNAITWSAIIGAFAMHGRAEDAII 357
>gi|449498539|ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 162/423 (38%), Positives = 237/423 (56%), Gaps = 35/423 (8%)
Query: 20 LSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKR 79
+H+ P +F N++IR +S SK P+ + L+ M R +SP++ T+PF+ K+
Sbjct: 67 FTHIPKPHVFICNSLIRAFSHSKIPHTPLFLYTHMNRNSISPNNYTFPFVLKSLADFKDL 126
Query: 80 ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY 139
+VH + K+G+ SDL++ N+L +D Y
Sbjct: 127 VGGQSVHTHVVKSGHASDLYVQNTL-------------------------------MDVY 155
Query: 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLV 199
A CG+M + ++VF+ M +VVSW+ LI GY +AL++FE+M+ G N VT+V
Sbjct: 156 ASCGKMGLCKKVFDEMLHTDVVSWTILIMGYRVSFMLDDALIVFEQMQYAGVDPNRVTIV 215
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
+ L ACA GA++ G + ++ K + + L T+LIDMY KCG IKEAL VF ++
Sbjct: 216 NALAACASFGAIEMGVWIHEFVKTKRWEVDVVLGTALIDMYGKCGRIKEALAVFQAMK-- 273
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
+ +V WN I GLA +E++ F M G+ D++T + +LSAC+H GLV
Sbjct: 274 EKNVYTWNVFINGLASAKCGEEAIAWFKRMDEEGVEADDVTLVAVLSACSHSGLVNSGRQ 333
Query: 320 FFKSL--GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
F SL G+ G P +HY+CMVD L+R G + EA I MP E T SM GSLLTG
Sbjct: 334 IFWSLIHGRFGFSPGIKHYSCMVDILARNGCIEEACVMINDMPFEATRSMWGSLLTGSRA 393
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
HG L+++EI +KLVE++P++ G YV LSN+YA +W E RE M+ RG+KK G S
Sbjct: 394 HGSLEVSEIAARKLVEMEPENGGYYVVLSNIYAEMGKWSEVEKVREIMKERGLKKDLGSS 453
Query: 438 FVE 440
VE
Sbjct: 454 SVE 456
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 125/267 (46%), Gaps = 34/267 (12%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
KV + + + W +I GY S + ++ +F +M AGV P+ +T A
Sbjct: 166 KVFDEMLHTDVVSWTILIMGYRVSFMLDDALIVFEQMQYAGVDPNRVTIVNALAACASFG 225
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
E+ V +H + +E D+ + +LI MYG CG I A VF M K +WN ++
Sbjct: 226 AIEMGVWIHEFVKTKRWEVDVVLGTALIDMYGKCGRIKEALAVFQAMKEKNVYTWNVFIN 285
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
G A KCG+ EA+ F+ M + G +A++VT
Sbjct: 286 GLAS-----------------------------AKCGE--EAIAWFKRMDEEGVEADDVT 314
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDK--GLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
LV+VL AC+H G ++ GR + +I G S + + ++D+ A+ G I+EA ++ +
Sbjct: 315 LVAVLSACSHSGLVNSGRQIFWSLIHGRFGFSPGIKHYSCMVDILARNGCIEEACVMIND 374
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKES 282
+ ++ +W +++ G HG ++ S
Sbjct: 375 M-PFEATRSMWGSLLTGSRAHGSLEVS 400
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 161/442 (36%), Positives = 255/442 (57%), Gaps = 12/442 (2%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G ++Y+ V ++ WN++I Y ++ ++++ +FV+M++ GV PD +T
Sbjct: 197 SKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLA 256
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A ++ + +HA++ K + +DL + N+L+ MY C I AR +FD MP
Sbjct: 257 SVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPI 316
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ VS SM+ GYAK ++ +AR +F M ++V++W+ALI G + G+ +EAL++F +
Sbjct: 317 RSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLL 376
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT------LPLQTSLIDMY 240
+ T ++L ACA+L L GR +++ G + + SLIDMY
Sbjct: 377 KRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMY 436
Query: 241 AKCGAIKEALIVF-HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
KCG+++ VF H +EK D + WNAMI G A +GF ++LE+F +M G PD +
Sbjct: 437 MKCGSVENGCRVFQHMLEK---DCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHV 493
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
T +G+L AC+H GL+ E Y+F+S+ + G++P +HY CMVD L RAG + EA I +
Sbjct: 494 TMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEE 553
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
M ++P A + GSLL C H + L E V KKL+E+ P++ G YV LSN+YA + W
Sbjct: 554 MSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNV 613
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R+ M RGV K PG S++E
Sbjct: 614 VRVRKLMRQRGVVKQPGCSWIE 635
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 156/307 (50%), Gaps = 16/307 (5%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VHA I K+ + S+ FI N LI +YG CG + AR++FD M + SWNS++ + K G
Sbjct: 41 VHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGF 100
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
++ A +FE MP+ + SW+++I G+ + G + EALV F +M G NE + S L A
Sbjct: 101 LDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSA 160
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
CA L L G + + + + ++L+DMY+KCG ++ A VF E +
Sbjct: 161 CAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFD--EMTVRSRV 218
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
WN++I +G V E+L++F EM G+ PDE+T ++SACA + E
Sbjct: 219 SWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQI---- 274
Query: 325 GKRGMVPKSEHY-------ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
V K + + ++D ++ ++ EA MP+ S S+++G
Sbjct: 275 --HARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSET-SMVSGYAK 331
Query: 378 HGKLDLA 384
K+ +A
Sbjct: 332 ASKVKVA 338
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 150/335 (44%), Gaps = 61/335 (18%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A + G +D + + + WN++I G+ + ++++ F +M G + +
Sbjct: 94 AFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYS 153
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ A L +L +H+ + ++ Y SD+++ ++L+ MY CG + YA+ VFD M
Sbjct: 154 FGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMT 213
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ VSWNS++ Y + G ++ EAL IF E
Sbjct: 214 VRSRVSWNSLITCYEQNGPVD-------------------------------EALKIFVE 242
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMM-LRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M G + +EVTL SV+ ACA + A+ +G+ + R + L L +L+DMYAKC
Sbjct: 243 MIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCN 302
Query: 245 AIKEALIVFH---------------GVEKHQ--------------SDVLIWNAMIGGLAM 275
I EA I+F G K DV+ WNA+I G
Sbjct: 303 RINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQ 362
Query: 276 HGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+G +E+L LF ++ + P TF LL+ACA+
Sbjct: 363 NGENEEALILFRLLKRESVWPTHYTFGNLLNACAN 397
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 178/503 (35%), Positives = 260/503 (51%), Gaps = 75/503 (14%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
G+ +YS V S + P IF WNT+IRG + +I L+ M G P++ T PF+
Sbjct: 61 FGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFV 120
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA R L + +H+ + K GY+ D+F+ SL+ +Y C + A +VFD +P K
Sbjct: 121 LKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNV 180
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPE-------------------------------- 157
VSW +++ GY G A F+ + E
Sbjct: 181 VSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRY 240
Query: 158 -------RNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGS----------------- 191
RNV ++L+D YVKCG+ + A +IF M +D+ S
Sbjct: 241 ISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQA 300
Query: 192 ------------KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP-LQTSLID 238
K + T+V VL ACA LGALD G + ++D+ L+ P L T+LID
Sbjct: 301 LDLFFQMQSENLKPDCYTMVGVLSACATLGALDLG-IWASSLMDRNEFLSNPVLGTALID 359
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MY+KCG++ +A +F ++K D ++WNAM+ GL+M+G K LF+ ++ GI PDE
Sbjct: 360 MYSKCGSVTQAWEIFTAMKK--KDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDE 417
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
TF+GLL C HGG V E FF ++ + + P EHY CMVD L RAG + EA++ I
Sbjct: 418 NTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLIN 477
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
MP++P A + G+LL GC H LAE V KKL+EL+P + G YV LSN+Y+ RW+E
Sbjct: 478 NMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEE 537
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
A R M+ + ++K S++E
Sbjct: 538 AEKIRSTMKEQQIQKIRACSWIE 560
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 155/433 (35%), Positives = 249/433 (57%), Gaps = 36/433 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + + KV +S + WN++I GYSK ++ +++ LF +M+ AG P+ ++ +
Sbjct: 176 GKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVL 235
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G L +L V + + + F+ ++LIHMYG
Sbjct: 236 GACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYG--------------------- 274
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
KCG++ AR++F+ M +++ V+W+A+I GY + G +EA+ +F++MR
Sbjct: 275 ----------KCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSS 324
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ +++TL+ +L ACA +GALD G+ + Y ++G + + T+L+DMYAKCG++ A
Sbjct: 325 TAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAF 384
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG--ITPDEITFLGLLSAC 308
VF+G+ + WNAMI LA HG +E+L LF M G ++P++ITF+G+LSAC
Sbjct: 385 RVFYGMPNKNE--VSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSAC 442
Query: 309 AHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
H GLV E F + G+VPK EHY+CMVD SRAG + EA++F+ MP +P +
Sbjct: 443 VHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVI 502
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
LG+LL C +D++E V K L+EL+P + G YV S +YA +RWD++ R M+
Sbjct: 503 LGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQ 562
Query: 428 RGVKKYPGWSFVE 440
+GV K PG S+++
Sbjct: 563 KGVSKTPGCSWID 575
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 177/484 (36%), Positives = 258/484 (53%), Gaps = 56/484 (11%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRI--FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD 62
SA + L + S +V + +P F NT++R Y+ P +++ F M R D
Sbjct: 392 SAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYALGGAPRDALAAFSAMPRR----D 447
Query: 63 HLTYPFLAKASGRLAKRELAV--AVHAQIAKTGYESDLFISNSLIHMYGSCG-------- 112
TY FL KA L+ +A AVH+ + K G D F+ N+LI Y G
Sbjct: 448 SFTYSFLIKA---LSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKV 504
Query: 113 -------DIVY----------------AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
D+V AR++FD MP K +VSWN++LDGY K GE+ A
Sbjct: 505 FDEMPERDVVSWNTAMAAMVREGELAGARKLFDEMPEKDTVSWNTILDGYTKAGEVEAAF 564
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM------------RDVGSKANEVT 197
++F+ MPERNVVSWS ++ GY K GD + A VIF++M ++ + +
Sbjct: 565 ELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIMMKEASVELDVAA 624
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+VS+L ACA G+L G+ + RY+ + L + + +LIDM+ KCG + A VF E
Sbjct: 625 VVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFD-TE 683
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
Q D + WN++IGG AMHG ++LELF +M+ G PD +T + +LSAC H G V E
Sbjct: 684 TVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEG 743
Query: 318 WYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
+F ++ + G++P+ EHY CM+D L R G + EA + I MP EP + GSLL+ C
Sbjct: 744 RRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACR 803
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436
H ++ AEI +L +LQP + G Y LSN+YA +W + R M+ G +K G
Sbjct: 804 LHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGS 863
Query: 437 SFVE 440
S+VE
Sbjct: 864 SWVE 867
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 165/431 (38%), Positives = 247/431 (57%), Gaps = 6/431 (1%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+ Y+ + + + NP F +NT+IR ++ P ++ F +M R V D ++PF KA
Sbjct: 74 LHYAKSIFNSIQNPSTFCYNTIIRVHTLLSFPIPALHFFTQMRRLSVPLDSHSFPFTLKA 133
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+L A +H Q+ K G+ SDL++ NSLIH Y A +VFD P + VS+
Sbjct: 134 CAQLGGVFSARCLHCQVLKFGFLSDLYVMNSLIHGYMVSDMSNDAYKVFDESPQRDVVSY 193
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY-KEALVIFEEMRDVGS 191
N ++DG+ K G++ AR++F+LMP R+ VSW+ +I G K GDY +EA+ +F+ M D+
Sbjct: 194 NVLIDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAK-GDYCEEAIELFDFMMDLEI 252
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ + V LVS L ACA LG L++G+ + Y+ + + L T L+D YAKCG + AL
Sbjct: 253 RPDNVALVSTLSACAQLGELEKGKKIHDYIERNAMKVDTFLSTGLVDFYAKCGCVDIALK 312
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
+F ++ WNAM+ GLAMHG+ + LE F+ M G+ PD I+ LG+L C+H
Sbjct: 313 IFDS--SSDKNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAGVKPDGISILGVLVGCSHS 370
Query: 312 GLVMEAWYFFKSLGKRGMVPKS-EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GLV EA F + VP+ +HY CM D L RAG + + E I MP S+
Sbjct: 371 GLVDEARKLFDEMESVYGVPREPKHYGCMADLLGRAGLIKKVMEMIKDMPRGGDMSVWSG 430
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET-RG 429
LL GC HG +++AE K L+EL+PD G Y L+NVYA +RW++ R ++ + R
Sbjct: 431 LLGGCRIHGDVEIAEKAAKHLMELKPDDGGVYSILANVYANAERWEDVMNIRRSLSSNRV 490
Query: 430 VKKYPGWSFVE 440
V K G+S ++
Sbjct: 491 VTKIAGFSLIQ 501
>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/415 (37%), Positives = 236/415 (56%), Gaps = 7/415 (1%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I GY S ++ LF +M+ V D T+ + A +VH QI
Sbjct: 262 WNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQIT 321
Query: 91 KTGY----ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
+ E+ L ++N+L+ +Y CG+I AR +FD M +K VSWN++L GY + ++
Sbjct: 322 RLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLD 381
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
A +VFE MP +N +SW ++ GYV G ++AL +F MR K + T + AC
Sbjct: 382 KAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACG 441
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
LG+L G+ + +++ G + +LI MYA+CGA+KEA ++F + D + W
Sbjct: 442 ELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMF--LVMPNIDSVSW 499
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
NAMI L HG +E+LELF M GI PD I+FL +L+AC H GLV E + +F+S+ +
Sbjct: 500 NAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKR 559
Query: 327 R-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
G++P +HY ++D L RAG++ EA + I MP EPT S+ ++L+GC G ++L
Sbjct: 560 DFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGA 619
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+L ++ P HDG Y+ LSN Y+ RW +A R+ M RGVKK PG S++E
Sbjct: 620 HAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIE 674
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 173/355 (48%), Gaps = 19/355 (5%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFLAKASGRLAKRELAVAVHAQ-- 88
N VI Y+++ + ++++F +L +G + PD ++ L A+G L + Q
Sbjct: 125 NAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCS 184
Query: 89 IAKTGYESDLFISNSLIHMYGSCGDIVY---AREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
+ K+G L +SN+L+ +Y C + AR+V D MP K +++W +M+ GY + G++
Sbjct: 185 VLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDV 244
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
AR VFE + + V W+A+I GYV G EA +F M +E T SVL AC
Sbjct: 245 GAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSAC 304
Query: 206 AHLGALDQGR----MMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
A+ G G+ + R + LP+ +L+ +Y+KCG I A +F ++
Sbjct: 305 ANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMK--SK 362
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
DV+ WN ++ G + +++E+F EM +E++++ ++S HGG +A F
Sbjct: 363 DVVSWNTILSGYVESSCLDKAVEVFEEMPY----KNELSWMVMVSGYVHGGFSEDALKLF 418
Query: 322 KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF---ICQMPLEPTASMLGSLLT 373
+ + P YA + A G + + + Q+ E + S +L+T
Sbjct: 419 NRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALIT 473
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 143/357 (40%), Gaps = 71/357 (19%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM------------- 54
S GNI + ++ ++ + + WNT++ GY +S +K++ +F +M
Sbjct: 344 SKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVS 403
Query: 55 --LRAGVSPDHL----------------TYPFLAKASGRLAKRELAVAVHAQIAKTGYES 96
+ G S D L TY A G L + +H + + G+E
Sbjct: 404 GYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEG 463
Query: 97 DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP 156
N+LI MY CG + A +F MP SVSWN+M+ + G
Sbjct: 464 SNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHG----------- 512
Query: 157 ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRM 216
+EAL +F+ M G + ++ ++VL AC H G +D+G
Sbjct: 513 --------------------REALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQ 552
Query: 217 MLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA--LIVFHGVEKHQSDVLIWNAMIGGL 273
M D G+ T LID+ + G I EA LI E S IW A++ G
Sbjct: 553 YFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPS---IWEAILSGC 609
Query: 274 AMHGFVKESLELFTEMQIVGITPD-EITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
G ++ L Q+ +TP + T++ L + + G ++A K + RG+
Sbjct: 610 RTSGDME--LGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGV 664
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 110/249 (44%), Gaps = 43/249 (17%)
Query: 104 LIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE--RNVV 161
LIH+Y GD+ A +F P V+ S++ YA G + A F+ +P+ R+ V
Sbjct: 65 LIHLYTLSGDLPAAATLFRADPCP--VAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTV 122
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGS-KANEVTLVSVLCACAHLG--ALDQGRMML 218
+A+I Y + A+ +F + GS + ++ + ++L A HL ++ +
Sbjct: 123 LHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQ 182
Query: 219 RYMIDKGLSLTLPLQTSLIDMYAKCGAI---------------KEALI------------ 251
++ G L + +L+ +Y KC A+ K+AL
Sbjct: 183 CSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRG 242
Query: 252 -------VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
VF V+ + DV +WNAMI G G V E+ ELF M + + DE TF +
Sbjct: 243 DVGAARSVFEEVDV-KFDV-VWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSV 300
Query: 305 LSACAHGGL 313
LSACA+ G
Sbjct: 301 LSACANAGF 309
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 167/426 (39%), Positives = 246/426 (57%), Gaps = 10/426 (2%)
Query: 22 HLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRL--AKR 79
+LS IF +N++IRGY S +P ++I ++ ML G+ ++ T+P L KA L + +
Sbjct: 343 NLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSK 402
Query: 80 ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY 139
+ VHA + G++ D F+ ++LI Y D+ AR +FD +P + V W +M+DGY
Sbjct: 403 LIGCLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGY 462
Query: 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLV 199
K G++ AR +FE MPERN +SWSA++ Y + GD+KE L +F M++ G+ NE LV
Sbjct: 463 GKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLV 522
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
SVL ACAHLGAL QG + Y L T+L+DMY+KCG ++ AL F G+
Sbjct: 523 SVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIP-- 580
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
D WNAMI G+AM+G +SLELF +M G P E TF+ +L+AC H LV E
Sbjct: 581 NKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVREGLK 640
Query: 320 FFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTASMLGSLLTGC 375
F+ + G+ P+ EHYAC+VD ++RAG + EA +FI + A++ G+ L C
Sbjct: 641 LFEQMSSNYGVEPQXEHYACLVDLMARAGMLAEAEKFIEEKMGGLGRGDANVWGAXLGAC 700
Query: 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWD-EARTTREAMETRGVKKYP 434
+G +++ V KKL ++ G +V N+Y WD EA+ R + G+KK P
Sbjct: 701 RTYGNIEVGNRVWKKLADMGVADCGTHVLSYNLYRE-AGWDMEAKRVRRLISEXGMKKKP 759
Query: 435 GWSFVE 440
G S +E
Sbjct: 760 GCSIIE 765
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 124/290 (42%), Gaps = 38/290 (13%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G+++++ + + W+ V+ YS+ + + + LF +M AG P+ +
Sbjct: 465 MGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSV 524
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L + VH+ + ++S+ ++ +L+ MY CG + A F G+P K +
Sbjct: 525 LTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDA 584
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+WN+M+ G A MN GD ++L +F +M
Sbjct: 585 GAWNAMISGVA----MN---------------------------GDAWKSLELFNKMISN 613
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKE 248
G++ E T V+VL AC H + +G + M G+ L+D+ A+ G + E
Sbjct: 614 GTQPTETTFVAVLTACTHARLVREGLKLFEQMSSNYGVEPQXEHYACLVDLMARAGMLAE 673
Query: 249 ALIVFHGVEK----HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
A EK + D +W A +G +G ++ ++ ++ +G+
Sbjct: 674 AEKFIE--EKMGGLGRGDANVWGAXLGACRTYGNIEVGNRVWKKLADMGV 721
>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
Length = 830
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 157/435 (36%), Positives = 243/435 (55%), Gaps = 7/435 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+++ + V + WN +I GY +S + LF +M+ V D T+ +
Sbjct: 246 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 305
Query: 71 KASGRLAKRELAVAVHAQIAKTGY----ESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
A +VH QI + E+ L ++N+L+ +Y G IV A+ +FD M
Sbjct: 306 SACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNL 365
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
K VSWN++L GY G ++ A +VF++MP +N +SW ++ GYV G ++AL +F +M
Sbjct: 366 KDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQM 425
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
R K + T + AC LGAL GR + +++ G + +L+ MYAKCGA+
Sbjct: 426 RAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAV 485
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+A +VF + D + WNAMI L HG +E+LELF +M GI PD I+FL +L+
Sbjct: 486 NDARLVF--LVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILT 543
Query: 307 ACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC H GLV E +++F+S+ + G+ P +HYA ++D L R+G++ EA + I MP EPT
Sbjct: 544 ACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTP 603
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
S+ ++L+GC +G ++ +L + P HDG Y+ LSN Y+ RW +A R+ M
Sbjct: 604 SIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLM 663
Query: 426 ETRGVKKYPGWSFVE 440
RGVKK PG S++E
Sbjct: 664 RDRGVKKEPGCSWIE 678
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 181/371 (48%), Gaps = 23/371 (6%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFLAKASGRLAKRELAVA----VH 86
N ++ ++++ ++S+F +L +G + PD ++ L A G++ LA +H
Sbjct: 129 NAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQM--HNLAAPHCTQLH 186
Query: 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVY---AREVFDGMPTKMSVSWNSMLDGYAKCG 143
+ K+G + L +SN+LI +Y C AR+V D MP K ++W +M+ GY + G
Sbjct: 187 CSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRG 246
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
++N AR VFE + + V W+A+I GYV+ G +A +F M +E T SVL
Sbjct: 247 DVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLS 306
Query: 204 ACAHLGALDQGR----MMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
ACA+ G G+ ++R + LP+ +L+ +Y+K G I A +F + +
Sbjct: 307 ACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTM--N 364
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
DV+ WN ++ G G + +++E+F M ++++++ ++S HGGL +A
Sbjct: 365 LKDVVSWNTILSGYIDSGCLDKAVEVFKVMPY----KNDLSWMVMVSGYVHGGLSEDALK 420
Query: 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF---ICQMPLEPTASMLGSLLTGCM 376
F + + P YA + A G + + + Q E + S +LLT
Sbjct: 421 LFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYA 480
Query: 377 NHGKLDLAEIV 387
G ++ A +V
Sbjct: 481 KCGAVNDARLV 491
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 177/503 (35%), Positives = 260/503 (51%), Gaps = 75/503 (14%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
G+ +YS V S + P IF WNT+IRG + +I L+ M G P++ T PF+
Sbjct: 61 FGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFV 120
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA R L + +H+ + K GY+ D+F+ SL+ +Y C + A +VFD +P K
Sbjct: 121 LKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNV 180
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPE-------------------------------- 157
VSW +++ GY G A F+ + E
Sbjct: 181 VSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRY 240
Query: 158 -------RNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGS----------------- 191
RNV ++L+D YVKCG+ + A +IF M +D+ S
Sbjct: 241 ISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQA 300
Query: 192 ------------KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP-LQTSLID 238
K + T+V VL ACA LGALD G + ++D+ L+ P L T+LID
Sbjct: 301 LDLFFQMQSENLKPDCYTMVGVLSACATLGALDLG-IWASSLMDRNEFLSNPVLGTALID 359
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MY+KCG++ +A +F +++ D ++WNAM+ GL+M+G K LF+ ++ GI PDE
Sbjct: 360 MYSKCGSVTQAWEIFTAMKR--KDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDE 417
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
TF+GLL C HGG V E FF ++ + + P EHY CMVD L RAG + EA++ I
Sbjct: 418 NTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLIN 477
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
MP++P A + G+LL GC H LAE V KKL+EL+P + G YV LSN+Y+ RW+E
Sbjct: 478 NMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEE 537
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
A R M+ + ++K S++E
Sbjct: 538 AEKIRSTMKEQQIQKIRACSWIE 560
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 169/431 (39%), Positives = 248/431 (57%), Gaps = 7/431 (1%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
ID++ K+ NP ++ + ++I G+ + +I+LF +M+R V D+ + KA
Sbjct: 75 IDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKA 134
Query: 73 SGRLAKRELAVA--VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ +R L VH + K+G D I+ L+ +YG CG + AR++FDGMP + V
Sbjct: 135 C--VLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVV 192
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+ M+ CG + A +VF M R+ V W+ +IDG V+ G++ L +F EM+ G
Sbjct: 193 ACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKG 252
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ NEVT V VL ACA LGAL+ GR + YM G+ + + +LI+MY++CG I EA
Sbjct: 253 VEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQ 312
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F GV DV +N+MIGGLA+HG E++ELF+EM + P+ ITF+G+L+AC+H
Sbjct: 313 ALFDGVR--VKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSH 370
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GGLV F+S+ G+ P+ EHY CMVD L R G++ EA++FI +M +E ML
Sbjct: 371 GGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLC 430
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL+ C H + + E V K L E G ++ LSN YA RW A RE ME G
Sbjct: 431 SLLSACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGG 490
Query: 430 VKKYPGWSFVE 440
+ K PG S +E
Sbjct: 491 IIKEPGCSSIE 501
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 138/303 (45%), Gaps = 31/303 (10%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
+L Y K ++ A ++F NV +++LIDG+V G Y +A+ +F +M A+
Sbjct: 65 LLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLAD 124
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
+ ++L AC AL G+ + ++ GL L + L+++Y KCG +++A +F
Sbjct: 125 NYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFD 184
Query: 255 GV-----------------------------EKHQSDVLIWNAMIGGLAMHGFVKESLEL 285
G+ E D + W +I GL +G LE+
Sbjct: 185 GMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEV 244
Query: 286 FTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSR 345
F EMQ+ G+ P+E+TF+ +LSACA G + + + K G+ +++ SR
Sbjct: 245 FREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSR 304
Query: 346 AGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK-LDLAEIVGKKLVELQPDHDGRYVG 404
G + EA + ++ S S++ G HGK ++ E+ + L E + +VG
Sbjct: 305 CGDIDEAQALFDGVRVKDV-STYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVG 363
Query: 405 LSN 407
+ N
Sbjct: 364 VLN 366
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 137/328 (41%), Gaps = 78/328 (23%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + +V + + W VI G ++ N+ + +F +M GV P+ +T+ +
Sbjct: 205 GMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVL 264
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A +L EL +HA + K G E + F++ +LI+MY CGDI A+ +FDG+ K
Sbjct: 265 SACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVS 324
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
++NSM+ G A G+ EA+ +F EM
Sbjct: 325 TYNSMIGGLALHGK-------------------------------SIEAVELFSEMLKER 353
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ N +T V VL AC+H G +D G G I E++
Sbjct: 354 VRPNGITFVGVLNACSHGGLVDLG-----------------------------GEIFESM 384
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+ HG+E +V + M+ L G ++E+ + M G+ D+ LLSAC
Sbjct: 385 EMIHGIE---PEVEHYGCMVDILGRVGRLEEAFDFIGRM---GVEADDKMLCSLLSACK- 437
Query: 311 GGLVMEAWYFFKSLGKRGMVPK--SEHY 336
K++G V K SEHY
Sbjct: 438 ---------IHKNIGMGEKVAKLLSEHY 456
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 249/431 (57%), Gaps = 5/431 (1%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
++Y+ V + + W+T+IR S++K + ++ L +M V P + +
Sbjct: 175 VEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNL 234
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFI--SNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + A+HA + + + + + +L+ MY CG + AR++F+G+ K V
Sbjct: 235 FADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVV 294
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW +M+ G + + AR +F+ R+V+ W+A++ Y + +A +F++MR G
Sbjct: 295 SWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG 354
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ +VT+VS+L CA GALD G+ + Y+ + + + L T+L+DMYAKCG I A
Sbjct: 355 VRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAG 414
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F +E D+ +WNA+I G AMHG+ +E+L++F EM+ G+ P++ITF+GLL AC+H
Sbjct: 415 RLF--IEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSH 472
Query: 311 GGLVMEAWYFF-KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E F K + G+VP+ EHY CMVD L RAG + EA+E I MP++P + G
Sbjct: 473 AGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWG 532
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+L+ C H L E+ +L+E++P++ G V +SN+YA RW +A R+ M+T G
Sbjct: 533 ALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVG 592
Query: 430 VKKYPGWSFVE 440
+KK PG S +E
Sbjct: 593 MKKEPGHSVIE 603
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 166/380 (43%), Gaps = 63/380 (16%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN VI Y+K P +++++ ++ + D+ P + KA G+++ +L +H +
Sbjct: 92 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G + D+F+ N+L+ MYG C + YAR VFD M + VSW++M+ ++ E +M
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDM--- 208
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
AL + EM + + +EV +VS++ A
Sbjct: 209 ----------------------------ALELIREMNFMQVRPSEVAMVSMVNLFADTAN 240
Query: 211 LDQGRMMLRYMIDKGLS--LTLPLQTSLIDMYAKCGAIKEALIVFHGVEK---------- 258
+ G+ M Y+I + + +P T+L+DMYAKCG + A +F+G+ +
Sbjct: 241 MRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMI 300
Query: 259 -------------------HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
DV+IW AM+ A + ++ LF +M+ G+ P ++
Sbjct: 301 AGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKV 360
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
T + LLS CA G + + + K + +VD ++ G + A +
Sbjct: 361 TIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIE- 419
Query: 360 PLEPTASMLGSLLTGCMNHG 379
+ M +++TG HG
Sbjct: 420 AISRDICMWNAIITGFAMHG 439
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 11/190 (5%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I+ + ++ + I WN +I G++ +++ +F +M R GV P+ +T+ L
Sbjct: 408 GDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLL 467
Query: 71 KASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK-M 128
A + ++ T G + ++ + G G + A E+ MP K
Sbjct: 468 HACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPN 527
Query: 129 SVSWNSM-----LDGYAKCGEMNMARQVFELMPERNVVSWSALIDG-YVKCGDYKEALVI 182
++ W ++ L + GE+ A Q+ E+ PE ++ L+ Y + +A +
Sbjct: 528 TIVWGALVAACRLHKNPQLGEL-AATQLLEIEPEN--CGYNVLMSNIYAAANRWSDAAGV 584
Query: 183 FEEMRDVGSK 192
+ M+ VG K
Sbjct: 585 RKTMKTVGMK 594
>gi|357477477|ref|XP_003609024.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510079|gb|AES91221.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 544
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 178/494 (36%), Positives = 262/494 (53%), Gaps = 61/494 (12%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLS----NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR 56
++ FSALS GN+ ++ + H S NP F NT+IR +S S P +++ ++ +ML
Sbjct: 44 LIFFSALSPFGNLSHAYSLFQHSSILIHNP--FISNTMIRAFSHSCFPLQALLIYNQMLI 101
Query: 57 AGVSPDHLTYPFLAKASGRLAK------------RELAVA------VHAQIAKTGYESDL 98
V D T F+ KA R K L V +H ++ K G+++D
Sbjct: 102 NNVVSDSYTCNFVLKACSRAYKLIQESGSCDDDDDNLVVVYNKGTEIHCRVIKIGFQNDP 161
Query: 99 FISNSLIHMYGSCGDIVYAREVFDG-------------------------------MPTK 127
+ NSL++ Y CG + AR +FD MP K
Sbjct: 162 SVQNSLLYFYSQCGLVSVARYLFDQIKDTSLVSWNIMISAYDRVDDYELADHLLELMPCK 221
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+SWN+++ Y + G++ AR+VF MPERN VSW+++I G V DY AL +F EM+
Sbjct: 222 TVISWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELFSEMQ 281
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
+ G K EVTL+S+L ACA GAL+ G + + + L +L++MY KCG +
Sbjct: 282 NAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKCGNLS 341
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV---GITPDEITFLGL 304
A +F+G++ V WNAM+ GLA+HG+ +E +LFTEM+ I PD +TF+G+
Sbjct: 342 LAWEIFNGMK--MKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGV 399
Query: 305 LSACAHGGLVMEA-WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L AC+H GLV +A WYF + + +VP S+HY CMVD L+R G + EAY+ I P +
Sbjct: 400 LVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLTRRGLLEEAYQIIMTAPFQN 459
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ + +LL C +LAEI K+L +L+ DG YV LSN+YA RWDE R
Sbjct: 460 SVVLWRTLLGACRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNIYAEAGRWDEVERLRS 519
Query: 424 AMETRGVKKYPGWS 437
M+ V + G+S
Sbjct: 520 EMDYLHVPRQAGYS 533
>gi|449436789|ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 161/423 (38%), Positives = 237/423 (56%), Gaps = 35/423 (8%)
Query: 20 LSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKR 79
+H+ P +F N++IR +S SK P+ + L+ M R +SP++ T+PF+ K+
Sbjct: 67 FTHIPKPHVFICNSLIRAFSHSKIPHTPLFLYTHMNRNSISPNNYTFPFVLKSLADFKDL 126
Query: 80 ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY 139
+VH + K+G+ SDL++ N+L +D Y
Sbjct: 127 VGGQSVHTHVVKSGHASDLYVQNTL-------------------------------MDVY 155
Query: 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLV 199
A CG+M + ++VF+ M +VVSW+ LI GY +AL++FE+M+ G N VT+V
Sbjct: 156 ASCGKMGLCKKVFDEMLHTDVVSWTILIMGYRVSFMLDDALIVFEQMQYAGVDPNRVTIV 215
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
+ L ACA GA++ G + ++ K + + L T+LIDMY KCG IKEAL VF ++
Sbjct: 216 NALAACASFGAIEMGVWIHEFVKTKRWEVDVVLGTALIDMYGKCGRIKEALAVFQAMK-- 273
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
+ +V WN I GLA +E++ F M G+ D++T + +LSAC+H GLV
Sbjct: 274 EKNVYTWNVFINGLASAKCGEEAIAWFKRMDEEGVEADDVTLVAVLSACSHSGLVNSGRQ 333
Query: 320 FFKSL--GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
F SL G+ G P +HY+CMVD L+R G + EA I MP E T SM GSLLTG
Sbjct: 334 IFWSLIHGRFGFSPGIKHYSCMVDILARNGCIEEACVMIKDMPFEATRSMWGSLLTGSRA 393
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
HG L+++EI ++LVE++P++ G YV LSN+YA +W E RE M+ RG+KK G S
Sbjct: 394 HGSLEVSEIAARRLVEMEPENGGYYVVLSNIYAEMGKWSEVEKVREIMKERGLKKDLGSS 453
Query: 438 FVE 440
VE
Sbjct: 454 SVE 456
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 124/267 (46%), Gaps = 34/267 (12%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
KV + + + W +I GY S + ++ +F +M AGV P+ +T A
Sbjct: 166 KVFDEMLHTDVVSWTILIMGYRVSFMLDDALIVFEQMQYAGVDPNRVTIVNALAACASFG 225
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
E+ V +H + +E D+ + +LI MYG CG I A VF M K +WN ++
Sbjct: 226 AIEMGVWIHEFVKTKRWEVDVVLGTALIDMYGKCGRIKEALAVFQAMKEKNVYTWNVFIN 285
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
G A KCG+ EA+ F+ M + G +A++VT
Sbjct: 286 GLAS-----------------------------AKCGE--EAIAWFKRMDEEGVEADDVT 314
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDK--GLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
LV+VL AC+H G ++ GR + +I G S + + ++D+ A+ G I+EA ++
Sbjct: 315 LVAVLSACSHSGLVNSGRQIFWSLIHGRFGFSPGIKHYSCMVDILARNGCIEEACVMIKD 374
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKES 282
+ ++ +W +++ G HG ++ S
Sbjct: 375 M-PFEATRSMWGSLLTGSRAHGSLEVS 400
>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 162/430 (37%), Positives = 244/430 (56%), Gaps = 4/430 (0%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+ Y+ ++ NP F +N +IR ++ + ++ F++M R V PD +YPF KA
Sbjct: 87 LHYAVSTFDNIQNPSTFCYNVIIRLHTLHSSALSALHFFLQMRRFSVPPDFHSYPFALKA 146
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
L LA +H+Q+ K G+ SDL++ NSLIH+Y + YA +VFD + VS+
Sbjct: 147 CAHLRVLSLAQCLHSQVFKFGFVSDLYVINSLIHVYSLFDCLNYACQVFDESSDRDVVSY 206
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
N+++DG+ K GE AR++F+LMP R+ VSW +LI GY + EA+ +F+ M + +
Sbjct: 207 NALVDGFVKAGEFVKAREIFDLMPMRDSVSWGSLIAGYAQGSYCNEAIGLFDLMMGLKLE 266
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ + LVS L ACA LG L++G+ + Y+ + L T L+D YAK G I A+ V
Sbjct: 267 PDNIALVSALSACAQLGELEKGKQIHDYIKKNRIQADSFLSTGLVDFYAKSGCIDTAIKV 326
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F ++ WNAM+ G+AMHG L F+ M GI PD I+FLG+L C+HGG
Sbjct: 327 FE--LSPDKSLITWNAMLIGIAMHGNSHLLLNYFSRMMEAGIKPDGISFLGVLVGCSHGG 384
Query: 313 LVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
LV EA F + G+ + +HY CM D L+RAG + EA E +P+ + L
Sbjct: 385 LVDEAKKLFDEMESIYGVRRELKHYGCMADLLARAGLIKEAVELTKGLPMGGDIFVWSGL 444
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET-RGV 430
L GC HG +++AE K+++EL+P+ G Y L+NVYA RW++ R +M + R V
Sbjct: 445 LGGCRIHGNIEIAEQAAKQVMELKPEDGGVYSILANVYANADRWEDVVKIRRSMSSNRAV 504
Query: 431 KKYPGWSFVE 440
KK G S ++
Sbjct: 505 KKNAGRSSIQ 514
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 25/191 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY---- 66
G ID + KV + + WN ++ G + N + ++ F +M+ AG+ PD +++
Sbjct: 318 GCIDTAIKVFELSPDKSLITWNAMLIGIAMHGNSHLLLNYFSRMMEAGIKPDGISFLGVL 377
Query: 67 ------PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
+ +A + E V ++ G +DL G I A E+
Sbjct: 378 VGCSHGGLVDEAKKLFDEMESIYGVRRELKHYGCMADLL---------ARAGLIKEAVEL 428
Query: 121 FDGMPTKMSV-SWNSMLDGYAKCGEMNM----ARQVFELMPERNVVSWSALIDGYVKCGD 175
G+P + W+ +L G G + + A+QV EL PE V +S L + Y
Sbjct: 429 TKGLPMGGDIFVWSGLLGGCRIHGNIEIAEQAAKQVMELKPEDGGV-YSILANVYANADR 487
Query: 176 YKEALVIFEEM 186
+++ + I M
Sbjct: 488 WEDVVKIRRSM 498
>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
Length = 589
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 178/493 (36%), Positives = 261/493 (52%), Gaps = 69/493 (13%)
Query: 14 DYSCKVLSHLSNP---RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
D++ V +HL+ F WNT++R ++ + +P +S+ F +M RA V+PD T+P +
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVRLHAAA-SPRRSLLYFSRMRRAAVAPDAYTFPAVL 123
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFIS----------------------------- 101
KA G + + VH + +TG ++DLF
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVRDLVS 183
Query: 102 -NSLIHMYGSCGDIVYA--------------------------------REVFDGMPTKM 128
NS++ Y CG++ A RE+FD MP +
Sbjct: 184 WNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRD 243
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
V WNSM+DGYA+ G M+ AR +FE MPERNV+SWS +IDGYV+ G+ EAL F+ M
Sbjct: 244 LVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLR 303
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G K + V V + ACA LGAL+QGR + Y+ K + + +QT+LIDMY KCG +
Sbjct: 304 CGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDL 363
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A ++F + K V+ WN MI GL HG+ ++++LF +M+ D+++ L +L++C
Sbjct: 364 AKLIFESMPK--KSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSC 421
Query: 309 AHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
H GLV E F + K G+ PK EHY ++D L RAG+V +A I MP+EPT +
Sbjct: 422 THAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPEL 481
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
GSLL C +H ++LAE+ ++L L D G YV LSN+YA WD+ R+ M
Sbjct: 482 WGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSA 541
Query: 428 RGVKKYPGWSFVE 440
G+KK G S +E
Sbjct: 542 EGMKKNIGRSVIE 554
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 111/241 (46%), Gaps = 34/241 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + + + + W+ VI GY + PN+++ F +MLR G+ PD +
Sbjct: 258 GRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAV 317
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A +L E +H+ + K D+ + +LI MY CG + A+ +F+ MP K V
Sbjct: 318 AACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVV 377
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WN M+ G G + L +A+ +F +M
Sbjct: 378 TWNVMIVGLGTHG--------YGL-----------------------DAIKLFNQMETER 406
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT--SLIDMYAKCGAIKE 248
+ +++++++VL +C H G + +G + + Y ++K L L ++ +LID+ + G + +
Sbjct: 407 APMDDLSILAVLTSCTHAGLVSEG-LGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQ 465
Query: 249 A 249
A
Sbjct: 466 A 466
>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
Length = 616
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 178/493 (36%), Positives = 261/493 (52%), Gaps = 69/493 (13%)
Query: 14 DYSCKVLSHLSNP---RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
D++ V +HL+ F WNT++R ++ + +P +S+ F +M RA V+PD T+P +
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVRLHAAA-SPRRSLLYFSRMRRAAVAPDAYTFPAVL 123
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFIS----------------------------- 101
KA G + + VH + +TG ++DLF
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVRDLVS 183
Query: 102 -NSLIHMYGSCGDIVYA--------------------------------REVFDGMPTKM 128
NS++ Y CG++ A RE+FD MP +
Sbjct: 184 WNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRD 243
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
V WNSM+DGYA+ G M+ AR +FE MPERNV+SWS +IDGYV+ G+ EAL F+ M
Sbjct: 244 LVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLR 303
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G K + V V + ACA LGAL+QGR + Y+ K + + +QT+LIDMY KCG +
Sbjct: 304 CGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDL 363
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A ++F + K V+ WN MI GL HG+ ++++LF +M+ D+++ L +L++C
Sbjct: 364 AKLIFESMPK--KSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSC 421
Query: 309 AHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
H GLV E F + K G+ PK EHY ++D L RAG+V +A I MP+EPT +
Sbjct: 422 THAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPEL 481
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
GSLL C +H ++LAE+ ++L L D G YV LSN+YA WD+ R+ M
Sbjct: 482 WGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSA 541
Query: 428 RGVKKYPGWSFVE 440
G+KK G S +E
Sbjct: 542 EGMKKNIGRSVIE 554
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 111/241 (46%), Gaps = 34/241 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + + + + W+ VI GY + PN+++ F +MLR G+ PD +
Sbjct: 258 GRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAV 317
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A +L E +H+ + K D+ + +LI MY CG + A+ +F+ MP K V
Sbjct: 318 AACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVV 377
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WN M+ G G + L +A+ +F +M
Sbjct: 378 TWNVMIVGLGTHG--------YGL-----------------------DAIKLFNQMETER 406
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT--SLIDMYAKCGAIKE 248
+ +++++++VL +C H G + +G + + Y ++K L L ++ +LID+ + G + +
Sbjct: 407 APMDDLSILAVLTSCTHAGLVSEG-LGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQ 465
Query: 249 A 249
A
Sbjct: 466 A 466
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 157/441 (35%), Positives = 246/441 (55%), Gaps = 10/441 (2%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S GN++ + +V + + + WN++I + ++ +++ +F ML + V PD +T
Sbjct: 198 SKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLA 257
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A L+ ++ VH ++ K +D+ +SN+ + MY C I AR +FD MP
Sbjct: 258 SVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ ++ SM+ GYA AR +F M ERNVVSW+ALI GY + G+ +EAL +F +
Sbjct: 318 RNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLL 377
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT------LPLQTSLIDMY 240
+ + ++L ACA L L G +++ G + + SLIDMY
Sbjct: 378 KRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMY 437
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
KCG ++E +VF + + D + WNAMI G A +G+ E+LELF EM G PD IT
Sbjct: 438 VKCGCVEEGYLVFRKM--MERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHIT 495
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
+G+LSAC H G V E ++F S+ + G+ P +HY CMVD L RAG + EA I +M
Sbjct: 496 MIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEM 555
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P++P + + GSLL C H + L + V +KL+E++P + G YV LSN+YA +W++
Sbjct: 556 PMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVM 615
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R++M GV K PG S+++
Sbjct: 616 NVRKSMRKEGVTKQPGCSWIK 636
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 132/226 (58%), Gaps = 4/226 (1%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VHA + K+G+ +++FI N LI Y CG + R+VFD MP + +WNS++ G K G
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
++ A +F MPER+ +W++++ G+ + +EAL F M G NE + SVL A
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLT-LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
C+ L +++G + + +I K L+ + + ++L+DMY+KCG + +A VF E +V
Sbjct: 162 CSGLNDMNKG-VQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFD--EMGDRNV 218
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ WN++I +G E+L++F M + PDE+T ++SACA
Sbjct: 219 VSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACA 264
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/436 (24%), Positives = 194/436 (44%), Gaps = 78/436 (17%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+ L+ LG +D + + + WN+++ G+++ +++ F M + G +
Sbjct: 94 TGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEY 153
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
++ + A L V VH+ IAK+ + SD++I ++L+ MY CG++ A+ VFD M
Sbjct: 154 SFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEM 213
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ VSWNS++ C E N G EAL +F+
Sbjct: 214 GDRNVVSWNSLI----TCFEQN---------------------------GPAVEALDVFQ 242
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMML-RYMIDKGLSLTLPLQTSLIDMYAKC 243
M + + +EVTL SV+ ACA L A+ G+ + R + + L + L + +DMYAKC
Sbjct: 243 MMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKC 302
Query: 244 GAIKEALIVFHGV-----------------------------EKHQSDVLIWNAMIGGLA 274
IKEA +F + + + +V+ WNA+I G
Sbjct: 303 SRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYT 362
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACA-----HGGL-----VMEAWYFFKSL 324
+G +E+L LF ++ + P +F +L ACA H G+ V++ + F+S
Sbjct: 363 QNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSG 422
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
+ + + ++D + G V E Y +M +E +++ G +G + A
Sbjct: 423 EEDDIFVGNS----LIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMIIGFAQNGYGNEA 477
Query: 385 EIVGKKLVEL--QPDH 398
+ ++++E +PDH
Sbjct: 478 LELFREMLESGEKPDH 493
>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 582
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 174/475 (36%), Positives = 246/475 (51%), Gaps = 69/475 (14%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
F WNT+IR ++ + +P +++ F M RA V PD T+P + KA A L + VHA+
Sbjct: 79 FPWNTLIRLHAPA-SPRNALAYFACMRRAAVEPDAYTFPAVLKAC---ACGVLGLPVHAE 134
Query: 89 IAKTGYESDLFISNSLIHMYG------------------------------SCGDIVYAR 118
+TG + DLF N+L+ Y +CG++ A+
Sbjct: 135 AVRTGMDGDLFTRNALVSFYCRIGDCRSGRKVFDHGARDLVSWNSMVAGYVACGELELAQ 194
Query: 119 EVFDGMPTKMSVSWN--------------------------------SMLDGYAKCGEMN 146
E+FDGMP + + SW SM+DGYA+ G M+
Sbjct: 195 ELFDGMPLRDAFSWATMIDAYGKRSGGVDRARELFDETPNRDLVCWCSMIDGYARQGRMD 254
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
AR +FE MPERNV+SWS ++DGYV+CG+ EAL +F+ M G K + V V ACA
Sbjct: 255 EARALFEEMPERNVISWSIVVDGYVRCGEPSEALELFQRMLRCGIKPDRVAAVGAFTACA 314
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
LGAL+QGR + Y+ K + + +QT+LIDMY KCG + ++F + V+ W
Sbjct: 315 QLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYMKCGRLDLGKLIFESMP--DKSVVTW 372
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
N MI GL H +++LF +M+ G D+++ L +L+AC H GL+ E F + K
Sbjct: 373 NVMIIGLGTHSCGLHAVKLFYQMEAEGAPIDDLSVLAVLTACTHAGLISEGLGIFHRMRK 432
Query: 327 R-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
GM PK EHY +VD L RAG + A I MP+EPT + GSLL C +H ++LAE
Sbjct: 433 DFGMDPKVEHYGALVDLLGRAGHLDHARHAIETMPMEPTPELWGSLLAACRSHRCVELAE 492
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ ++L L D G YV LSN+YA WD R M G+KK G S +E
Sbjct: 493 LSVERLASLGADDFGVYVLLSNIYADEGMWDGVFRIRRLMSAEGMKKDIGRSVIE 547
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 130/299 (43%), Gaps = 39/299 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + + + + W+ V+ GY + P++++ LF +MLR G+ PD +
Sbjct: 251 GRMDEARALFEEMPERNVISWSIVVDGYVRCGEPSEALELFQRMLRCGIKPDRVAAVGAF 310
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A +L E +H+ + K D+ + +LI MY CG + + +F+ MP K V
Sbjct: 311 TACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYMKCGRLDLGKLIFESMPDKSVV 370
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WN M+ G G CG + A+ +F +M G
Sbjct: 371 TWNVMIIGL-----------------------------GTHSCGLH--AVKLFYQMEAEG 399
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ +++++++VL AC H G + +G + M D G+ + +L+D+ + G + A
Sbjct: 400 APIDDLSVLAVLTACTHAGLISEGLGIFHRMRKDFGMDPKVEHYGALVDLLGRAGHLDHA 459
Query: 250 LIVFHGVE--KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
H +E + +W +++ H V E EL E ++ + D+ LLS
Sbjct: 460 R---HAIETMPMEPTPELWGSLLAACRSHRCV-ELAELSVE-RLASLGADDFGVYVLLS 513
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 22/207 (10%)
Query: 158 RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL--CACAHLGALDQGR 215
R+ W+ LI + + AL F MR + + T +VL CAC LG
Sbjct: 76 RDAFPWNTLIRLHAP-ASPRNALAYFACMRRAAVEPDAYTFPAVLKACACGVLGLPVHAE 134
Query: 216 MMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF-HGVEKHQSDVLIWNAMIGGLA 274
+ G+ L + +L+ Y + G + VF HG D++ WN+M+ G
Sbjct: 135 A-----VRTGMDGDLFTRNALVSFYCRIGDCRSGRKVFDHGAR----DLVSWNSMVAGYV 185
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACA-HGGLVMEAWYFFKSLGKRGMVPKS 333
G ++ + ELF M + D ++ ++ A G V A F R +V
Sbjct: 186 ACGELELAQELFDGMPL----RDAFSWATMIDAYGKRSGGVDRARELFDETPNRDLVC-- 239
Query: 334 EHYACMVDALSRAGQVTEAYEFICQMP 360
+ M+D +R G++ EA +MP
Sbjct: 240 --WCSMIDGYARQGRMDEARALFEEMP 264
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 167/446 (37%), Positives = 263/446 (58%), Gaps = 9/446 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+ F+A+S LG++ Y+ ++ + +P F++NT+IR ++ S P+ S F M + V+
Sbjct: 45 LFRFAAVSPLGDLRYAHRMFDQMPHPTTFFYNTLIRAHAHSTTPSLSSLSFNLMRQNNVA 104
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD ++ FL K+ R VH + K G+ L + N LIH Y + G + AR V
Sbjct: 105 PDQFSFNFLLKSRSRTTPLTHHNDVHGAVLKFGFCRHLHVQNGLIHFYANRGMTLLARRV 164
Query: 121 FD-----GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
F+ G+ + VSW+ +L + K GE+ +AR+VF+ MP+R+VVSW+A++ GY +
Sbjct: 165 FEDVLQLGLEVDV-VSWSGLLVAHVKAGELEVARRVFDEMPQRDVVSWTAMLTGYSQAKR 223
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
+EAL +F EMR G +EVT+VS++ ACA LG ++ G M+ R++ + G + L +
Sbjct: 224 PREALELFGEMRRSGVWPDEVTMVSLVSACASLGDMETGMMVHRFVEENGFGWMVALCNA 283
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
LIDMY KCG ++EA VFHG+ + ++ WN M+ A +G E+ LF M G+
Sbjct: 284 LIDMYGKCGCLEEAWRVFHGMTR--KSLITWNTMVTVCANYGNADEAFRLFEWMVCSGVV 341
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYE 354
PD +T L LL A AH GLV E F+S+ + G+ P+ EHY ++D L RAG++ EAY+
Sbjct: 342 PDSVTLLALLVAYAHKGLVDEGIRLFESMDRDYGVEPRIEHYGAVIDMLGRAGRLQEAYD 401
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414
+ +P+ ++ G+LL C HG +++ E + KKL+EL+PD G Y+ L ++Y +
Sbjct: 402 LLTNIPIPCNDAVWGALLGACRIHGDVEMGEKLIKKLLELKPDEGGYYILLRDIYVAAGQ 461
Query: 415 WDEARTTREAMETRGVKKYPGWSFVE 440
EA TR+AM +K PG S+VE
Sbjct: 462 TVEANETRQAMLASRARKNPGCSWVE 487
>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
Length = 808
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 157/435 (36%), Positives = 243/435 (55%), Gaps = 7/435 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+++ + V + WN +I GY +S + LF +M+ V D T+ +
Sbjct: 248 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 307
Query: 71 KASGRLAKRELAVAVHAQIAKTGY----ESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
A +VH QI + E+ L ++N+L+ +Y G IV A+ +FD M
Sbjct: 308 SACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNL 367
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
K VSWN++L GY G ++ A +VF++MP +N +SW ++ GYV G ++AL +F +M
Sbjct: 368 KDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQM 427
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
R K + T + AC LGAL GR + +++ G + +L+ MYAKCGA+
Sbjct: 428 RAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAV 487
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+A +VF + D + WNAMI L HG +E+LELF +M GI PD I+FL +L+
Sbjct: 488 NDARLVF--LVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILT 545
Query: 307 ACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC H GLV E +++F+S+ + G+ P +HYA ++D L R+G++ EA + I MP EPT
Sbjct: 546 ACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTP 605
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
S+ ++L+GC +G ++ +L + P HDG Y+ LSN Y+ RW +A R+ M
Sbjct: 606 SIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLM 665
Query: 426 ETRGVKKYPGWSFVE 440
RGVKK PG S++E
Sbjct: 666 RDRGVKKEPGCSWIE 680
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 179/369 (48%), Gaps = 19/369 (5%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFLAKASGRLAKRELA--VAVHAQ 88
N ++ ++++ ++S+F +L +G + PD ++ L A G++ +H
Sbjct: 131 NAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCS 190
Query: 89 IAKTGYESDLFISNSLIHMYGSCGDIVY---AREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
+ K+G + L +SN+LI +Y C AR+V D MP K ++W +M+ GY + G++
Sbjct: 191 VLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDV 250
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
N AR VFE + + V W+A+I GYV+ G +A +F M +E T SVL AC
Sbjct: 251 NAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSAC 310
Query: 206 AHLGALDQGR----MMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
A+ G G+ ++R + LP+ +L+ +Y+K G I A +F + +
Sbjct: 311 ANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTM--NLK 368
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
DV+ WN ++ G G + +++E+F M ++++++ ++S HGGL +A F
Sbjct: 369 DVVSWNTILSGYIDSGCLDKAVEVFKVMPY----KNDLSWMVMVSGYVHGGLSEDALKLF 424
Query: 322 KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF---ICQMPLEPTASMLGSLLTGCMNH 378
+ + P YA + A G + + + Q E + S +LLT
Sbjct: 425 NQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKC 484
Query: 379 GKLDLAEIV 387
G ++ A +V
Sbjct: 485 GAVNDARLV 493
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 152/438 (34%), Positives = 255/438 (58%), Gaps = 4/438 (0%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L+ +G + + +LS + W ++I YS++ +++ F ML G++PD
Sbjct: 180 ISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDE 239
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T + A +L EL ++H + + G + + +LI MY CGD +A++VFD
Sbjct: 240 VTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDA 299
Query: 124 MPT-KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ SWN+++DGY K G +++AR +F+ M R+++++++++ GY+ G +EAL++
Sbjct: 300 LGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLL 359
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F MR + + T+V++L ACA LGAL QGR + + + + + L T+L+DMY K
Sbjct: 360 FMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMK 419
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG + EA IVF + K DV W AMI GLA +G K +LE F +M+ G P+ ++++
Sbjct: 420 CGRVDEATIVFQRMGK--RDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYI 477
Query: 303 GLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+L+AC+H L+ E +F + + P+ EHY CM+D L R+G + EA + + MP+
Sbjct: 478 AVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPI 537
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
+P A + S+L+ C H +DLA+ + L++L+PD DG YV L N+Y ++W+ A
Sbjct: 538 QPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKI 597
Query: 422 REAMETRGVKKYPGWSFV 439
R ME R VKK G+S +
Sbjct: 598 RMLMEERQVKKTAGYSSI 615
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 123/377 (32%), Positives = 193/377 (51%), Gaps = 19/377 (5%)
Query: 26 PRIFYWNTVIRGYSKS-KNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE---L 81
P F ++T +R S++ +P++ LF +M RAGV PD T+ FL K S ++ L
Sbjct: 65 PSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLL 124
Query: 82 AVAVHAQIAKTGYESDL-FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
+HA +T S F+SNSLIHMY G AR FD + K +V+W ++ G A
Sbjct: 125 CTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLA 184
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
K G + + + P R+V+SW++LI Y + +EA+ F+ M G +EVT+++
Sbjct: 185 KMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIA 244
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV---E 257
VL ACA L L+ GR + + +KG+ + L +LIDMYAKCG A VF +
Sbjct: 245 VLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGP 304
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+ QS WNA+I G HG V + LF EM++ I ITF +++ H G + EA
Sbjct: 305 RPQS----WNAIIDGYCKHGHVDVARSLFDEMEVRDI----ITFNSMMTGYIHSGQLREA 356
Query: 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA---YEFICQMPLEPTASMLGSLLTG 374
F S+ + + + ++ A + G + + + I Q +E + +LL
Sbjct: 357 LLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDM 416
Query: 375 CMNHGKLDLAEIVGKKL 391
M G++D A IV +++
Sbjct: 417 YMKCGRVDEATIVFQRM 433
>gi|225435652|ref|XP_002283361.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730
[Vitis vinifera]
Length = 461
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 159/415 (38%), Positives = 237/415 (57%), Gaps = 35/415 (8%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
IF WN++IR Y+KS P +++ LF +M R G+ PD+ TYPF+ KA GR A+H+
Sbjct: 65 IFAWNSIIRAYTKSSVPIEAVKLFSQMQRVGLKPDNFTYPFVVKACGRSLVVGAGGAMHS 124
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
I K G++SD ++ N+L+ MY A + +
Sbjct: 125 IIVKAGFDSDRYVGNTLLRMY-------------------------------ANLNAVGL 153
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
AR+VF M R+VVSWS++I GYV C +AL++F M K N VTLVS+L AC
Sbjct: 154 ARRVFNEMTVRDVVSWSSMIAGYVACNCQADALMVFRHMMLANEKPNSVTLVSLLSACTR 213
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
L + G + Y+I + L + L T++++MY+KCG I++AL VF+ + + ++ W
Sbjct: 214 LLNIGVGESIHSYIIVNCIGLDVALGTAILEMYSKCGHIEKALKVFNSLT--EKNLQSWT 271
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK- 326
MI GLA H ++++ LFT+M+ G+ PD ++F +LSAC+H GLV E FF + K
Sbjct: 272 IMISGLADHSHGEDAISLFTQMEQTGLQPDSMSFSEILSACSHLGLVDEGQTFFSQMVKI 331
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL-DLAE 385
+ P EHY CMVD +RAG + EAYE I MP+EP + +L S + C N G++ E
Sbjct: 332 YNIRPTMEHYGCMVDMFARAGMIEEAYEIIKNMPMEPNSVILRSFIGACRNDGRVFGFDE 391
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ + L+E++PD YV S V ++ W+EA R +M+ +G+KK PGWS VE
Sbjct: 392 NLRRLLLEIEPDLGANYVLASGVSSLSGCWNEAADLRVSMKEKGLKKVPGWSRVE 446
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 116/271 (42%), Gaps = 33/271 (12%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
L + + +V + ++ + W+++I GY ++ +F M+ A P+ +T L
Sbjct: 148 LNAVGLARRVFNEMTVRDVVSWSSMIAGYVACNCQADALMVFRHMMLANEKPNSVTLVSL 207
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A RL + ++H+ I D+ + +++ MY CG I A +VF+ + K
Sbjct: 208 LSACTRLLNIGVGESIHSYIIVNCIGLDVALGTAILEMYSKCGHIEKALKVFNSLTEK-- 265
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
N+ SW+ +I G ++A+ +F +M
Sbjct: 266 -----------------------------NLQSWTIMISGLADHSHGEDAISLFTQMEQT 296
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKE 248
G + + ++ +L AC+HLG +D+G+ M+ + T+ ++DM+A+ G I+E
Sbjct: 297 GLQPDSMSFSEILSACSHLGLVDEGQTFFSQMVKIYNIRPTMEHYGCMVDMFARAGMIEE 356
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
A + + + V I + IG G V
Sbjct: 357 AYEIIKNMPMEPNSV-ILRSFIGACRNDGRV 386
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 7/157 (4%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+I+ + KV + L+ + W +I G + + +ISLF +M + G+ PD +++
Sbjct: 247 SKCGHIEKALKVFNSLTEKNLQSWTIMISGLADHSHGEDAISLFTQMEQTGLQPDSMSFS 306
Query: 68 FLAKASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A L + +Q+ K + ++ M+ G I A E+ MP
Sbjct: 307 EILSACSHLGLVDEGQTFFSQMVKIYNIRPTMEHYGCMVDMFARAGMIEEAYEIIKNMPM 366
Query: 127 K-MSVSWNSML-----DGYAKCGEMNMARQVFELMPE 157
+ SV S + DG + N+ R + E+ P+
Sbjct: 367 EPNSVILRSFIGACRNDGRVFGFDENLRRLLLEIEPD 403
>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 163/472 (34%), Positives = 250/472 (52%), Gaps = 38/472 (8%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S S L + DYS + + F N +IRG +++ S+ F+ MLR GV PD L
Sbjct: 68 SCSSLLKSPDYSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRL 127
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD-- 122
T+PF+ K++ +L R L A+HA K + D F+ SL+ MY G + +A +VF+
Sbjct: 128 TFPFVLKSNSKLGFRWLGRALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEES 187
Query: 123 ---------------------------------GMPTKMSVSWNSMLDGYAKCGEMNMAR 149
MP + S SW++++ GY GE+N A+
Sbjct: 188 PDRIKKESILIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAK 247
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
Q+FELMPE+NVVSW+ LI+G+ + GDY+ A+ + EM + G K NE T+ +VL AC+ G
Sbjct: 248 QLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSG 307
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
AL G + Y++D G+ L + T+L+DMYAKCG + A VF + + D+L W AM
Sbjct: 308 ALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNM--NHKDILSWTAM 365
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG-KRG 328
I G A+HG ++++ F +M G PDE+ FL +L+AC + V FF S+
Sbjct: 366 IQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYA 425
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
+ P +HY +VD L RAG++ EA+E + MP+ P + +L C H AE V
Sbjct: 426 IEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVS 485
Query: 389 KKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ L+EL P+ G Y+ L +A + R +++ R ++ GWS++E
Sbjct: 486 QNLLELDPELCGSYIFLDKTHASKGNIQDVEKRRLSLQKRIKERSLGWSYIE 537
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 151/432 (34%), Positives = 246/432 (56%), Gaps = 2/432 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG+++ + K+ + + WNT++ Y+K N++I L+ R + + ++ +
Sbjct: 142 LGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGV 201
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+L + +LA VH Q+ G+ S+L +S+S++ Y CG++ AR +FD M K
Sbjct: 202 LILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDI 261
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+W +++ GYAK G+MN A ++F MPE+N VSWSALI GY + EAL F +M
Sbjct: 262 HAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKF 321
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G + T S LCACA + AL G+ + Y+I + +SLIDMY+KCG ++ +
Sbjct: 322 GINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEAS 381
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VFH + Q DV++WN MI LA +G ++++++F +M G+ PD ITF+ +LSAC+
Sbjct: 382 CCVFHLMGNKQ-DVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACS 440
Query: 310 HGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E FFK++ G+ P EHYAC++D L RAG E + M +P +
Sbjct: 441 HSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDRVW 500
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+LL C H ++L V ++++EL+P YV L+++YA +W+ RE M+ +
Sbjct: 501 SALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEK 560
Query: 429 GVKKYPGWSFVE 440
++K G S+++
Sbjct: 561 FIRKERGISWID 572
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 129/255 (50%), Gaps = 30/255 (11%)
Query: 85 VHAQIAKTGYES-DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
VH + TG++ ++N LI MY CG V AR+VFD M + SWN ML GYAK G
Sbjct: 84 VHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLG 143
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
++N AR++F+ M E++VVSW+ ++ Y K G + EA+ ++ + R + N + VL
Sbjct: 144 DVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLI 203
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH--------- 254
C L L + + ++ G L L +S++D Y+KCG ++ A +F
Sbjct: 204 LCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHA 263
Query: 255 ------GVEK-----------HQ---SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
G K HQ + + W+A+I G A + E+L+ FT+M GI
Sbjct: 264 WTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGI 323
Query: 295 TPDEITFLGLLSACA 309
P++ TF L ACA
Sbjct: 324 NPEQYTFSSCLCACA 338
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 151/348 (43%), Positives = 219/348 (62%), Gaps = 4/348 (1%)
Query: 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
E D+ + N++I Y D++ ARE+FD MP K +SWN++L+GYA G++ ++FE
Sbjct: 145 ERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEE 204
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA-NEVTLVSVLCACAHLGALDQ 213
MPERNV SW+ALI GY + G + E L F+ M G+ N+ TLV+VL ACA LGALD
Sbjct: 205 MPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDL 264
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
G+ + Y G + ++ +L+DMYAKCG ++ AL VF ++ D++ WN +IGGL
Sbjct: 265 GKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMD--NKDLISWNTIIGGL 322
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPK 332
A+HG ++L LF+ M+I G PD ITF+G+L AC H GLV + + +FKS+ +VP+
Sbjct: 323 AVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPR 382
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV 392
EHY C+VD L RAG + A +FI +MP+E A + +LL C + ++LAE+ +KL+
Sbjct: 383 IEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLI 442
Query: 393 ELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
E +P + YV LSN+Y F RW + + AM G KK PG S +E
Sbjct: 443 EFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGFKKLPGCSLIE 490
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 123/276 (44%), Gaps = 41/276 (14%)
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
M A +VF+ +PE N W+A+ GY + +K+ +V+F +M+ + N T +L +
Sbjct: 1 MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF-HGVEKH---- 259
C + AL +G + ++I G + T+LIDMYA GAI A VF +E++
Sbjct: 61 CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120
Query: 260 ------------------------QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
+ D+++WN MI G V + ELF +M
Sbjct: 121 TAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMP----N 176
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
D +++ +L+ A G VM F+ + +R + + ++ +R G +E
Sbjct: 177 KDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFS----WNALIGGYTRNGCFSEVLSA 232
Query: 356 ICQMPLE----PTASMLGSLLTGCMNHGKLDLAEIV 387
+M ++ P + L ++L+ C G LDL + V
Sbjct: 233 FKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWV 268
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 27/198 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + V + N + WNT+I G + + +++LF M AG +PD +T+ +
Sbjct: 295 GVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGI- 353
Query: 71 KASGRLAKRELAVAVHAQIAKTGYE------SDLFISNSLIH------MYGSCGDIVYAR 118
L H + + G+ D I + H + G G + +A
Sbjct: 354 ----------LCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAV 403
Query: 119 EVFDGMPTKM-SVSWNSMLDGYAKCGEMNMARQVFELMPE---RNVVSWSALIDGYVKCG 174
+ MP + +V W ++L + +A E + E +N ++ L + Y G
Sbjct: 404 DFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFG 463
Query: 175 DYKEALVIFEEMRDVGSK 192
+K+ + MRD G K
Sbjct: 464 RWKDVARLKVAMRDTGFK 481
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 159/417 (38%), Positives = 242/417 (58%), Gaps = 36/417 (8%)
Query: 29 FYWNTVIRGYSKSKNPN---KSISLFVKMLRAGVSPDHLTYPFLAKASGRL-AKRELAVA 84
F NT+IR ++ S + ++ + F MLR V P+ T+PFL KA L ++ +
Sbjct: 89 FLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQ 148
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
HA K G+ +D ++SN+LIHMY SC F G G
Sbjct: 149 AHAAALKFGFATDQYVSNTLIHMY-SC---------FGG-------------------GF 179
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
+ AR VF+ MP+ + V+WSA+I GYV+ G +A+ +F EM+ G +A+EVT++ VL A
Sbjct: 180 LGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAA 239
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
LGAL+ R + R++ +G+ ++ L +LID AKCG + A+ VF G++ Q V+
Sbjct: 240 ATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQ--QRSVV 297
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
W ++I LAM G KE++ +F EM++ G+ PD++ F+G+L+AC+H G+V E +F ++
Sbjct: 298 SWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAM 357
Query: 325 G-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+ G+ PK EHY CMVD RAG V A EF+ MP++P + SL++ C HG+L+L
Sbjct: 358 KVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLEL 417
Query: 384 AEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
E + + L+ P H+ Y+ LSNV+A+ +RW E R M RG+KK PG S VE
Sbjct: 418 GESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVE 474
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 59/147 (40%), Gaps = 2/147 (1%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
L+ G++D + V + + W +VI + +++ +F +M AGV PD + +
Sbjct: 275 LAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAF 334
Query: 67 PFLAKASGRLAKRELAVA-VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ A + A + G E + ++ M+G G + A E MP
Sbjct: 335 IGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMP 394
Query: 126 TKMS-VSWNSMLDGYAKCGEMNMARQV 151
+ + V W S++ G + + +
Sbjct: 395 IQPNPVIWRSLVSACRAHGRLELGESI 421
>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
Length = 799
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 152/438 (34%), Positives = 255/438 (58%), Gaps = 4/438 (0%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L+ +G + + +LS + W ++I YS++ +++ F ML G++PD
Sbjct: 180 ISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDE 239
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T + A +L EL ++H + + G + + +LI MY CGD +A++VFD
Sbjct: 240 VTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDA 299
Query: 124 MPT-KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ SWN+++DGY K G +++AR +F+ M R+++++++++ GY+ G +EAL++
Sbjct: 300 LGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLL 359
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F MR + + T+V++L ACA LGAL QGR + + + + + L T+L+DMY K
Sbjct: 360 FMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMK 419
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG + EA IVF + K DV W AMI GLA +G K +LE F +M+ G P+ ++++
Sbjct: 420 CGRVDEATIVFQRMGK--RDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYI 477
Query: 303 GLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+L+AC+H L+ E +F + + P+ EHY CM+D L R+G + EA + + MP+
Sbjct: 478 AVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPI 537
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
+P A + S+L+ C H +DLA+ + L++L+PD DG YV L N+Y ++W+ A
Sbjct: 538 QPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKI 597
Query: 422 REAMETRGVKKYPGWSFV 439
R ME R VKK G+S +
Sbjct: 598 RMLMEERQVKKTAGYSSI 615
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 123/377 (32%), Positives = 193/377 (51%), Gaps = 19/377 (5%)
Query: 26 PRIFYWNTVIRGYSKS-KNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE---L 81
P F ++T +R S++ +P++ LF +M RAGV PD T+ FL K S ++ L
Sbjct: 65 PSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLL 124
Query: 82 AVAVHAQIAKTGYESDL-FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
+HA +T S F+SNSLIHMY G AR FD + K +V+W ++ G A
Sbjct: 125 CTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLA 184
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
K G + + + P R+V+SW++LI Y + +EA+ F+ M G +EVT+++
Sbjct: 185 KMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIA 244
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV---E 257
VL ACA L L+ GR + + +KG+ + L +LIDMYAKCG A VF +
Sbjct: 245 VLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGP 304
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+ QS WNA+I G HG V + LF EM++ I ITF +++ H G + EA
Sbjct: 305 RPQS----WNAIIDGYCKHGHVDVARSLFDEMEVRDI----ITFNSMMTGYIHSGQLREA 356
Query: 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA---YEFICQMPLEPTASMLGSLLTG 374
F S+ + + + ++ A + G + + + I Q +E + +LL
Sbjct: 357 LLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDM 416
Query: 375 CMNHGKLDLAEIVGKKL 391
M G++D A IV +++
Sbjct: 417 YMKCGRVDEATIVFQRM 433
>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
Length = 590
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 174/492 (35%), Positives = 252/492 (51%), Gaps = 73/492 (14%)
Query: 19 VLSHLSNPRI---FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGR 75
V + L P F WNT IR ++ + P ++ F +M GV PD T+P + KA G
Sbjct: 67 VFARLPEPAARDPFPWNTAIRLHAPGR-PRAALLYFARMRSCGVRPDAYTFPAVLKACGC 125
Query: 76 LAKRELAVAVHAQIAKTGYESDLFISNSLIHM---------------------------- 107
+ VHA+ + G +DLF N+LI
Sbjct: 126 APGCRAGLLVHAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGVSRDLVSWN 185
Query: 108 -----YGSCGDIVYAREVFDGMPTKMS--------------------------------- 129
Y CG++ A+E+FD MP + +
Sbjct: 186 SMVAGYVGCGEMGLAQELFDEMPQRDAFSWGALIDGYGKQGGAGVDRARELFDQMTERDL 245
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
V WNSM+DGYA+ G M+ AR +FE MPERNV+SWS +IDG+V+CG+ KEAL F+ M
Sbjct: 246 VCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRC 305
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G + + V V + ACA LGAL+QGR + Y+ K + + +QT+LIDMY KCG + A
Sbjct: 306 GIRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLA 365
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+++F + + V+ WN MI GL HG+ +++ LF M+ + D+++ L +L+AC
Sbjct: 366 MLIFESMPERS--VVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACT 423
Query: 310 HGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E F + K G+ PK EHY +VD L RAG++ +A I MP+EPT +
Sbjct: 424 HAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELW 483
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
GSLL C +H ++LAE+ ++L L D G YV LSN+YA W + R+ M
Sbjct: 484 GSLLAACRSHSCVELAELSVERLANLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDE 543
Query: 429 GVKKYPGWSFVE 440
G++K G S +E
Sbjct: 544 GMRKDIGRSVIE 555
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 126/299 (42%), Gaps = 39/299 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + + + + W+ VI G+ + +++ F MLR G+ PD +
Sbjct: 259 GRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRPDRVAAVGAV 318
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A +L E +H+ + K SD+ + +LI MY CG + A +F+ MP + V
Sbjct: 319 SACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMPERSVV 378
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WN M+ G G + L +A+++F M
Sbjct: 379 TWNVMIVGLGTHG--------YGL-----------------------DAVMLFHRMEAER 407
Query: 191 SKANEVTLVSVLCACAHLGALDQG-RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
++++L+++L AC H G + +G + R D G+ + +L+D+ + G + +A
Sbjct: 408 VAVDDLSLLAMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQA 467
Query: 250 LIVFHGVE--KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
H +E + +W +++ H V E EL E ++ + D+ LLS
Sbjct: 468 R---HAIETMPMEPTPELWGSLLAACRSHSCV-ELAELSVE-RLANLGADDSGVYVLLS 521
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 160/427 (37%), Positives = 249/427 (58%), Gaps = 3/427 (0%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
++ KV +S + WN++I GY + + ++ + +F +M A V D +T + A
Sbjct: 848 FARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACT 907
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
L + + A+ I + E D+++ N+LI MYG + AR VFD M + VSWN+
Sbjct: 908 VLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNA 967
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
M+ GY K G + AR++F+ MP R+V+SW+++I Y + G + +A+ +F+EM K +
Sbjct: 968 MIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPD 1027
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
E+T+ SVL ACAH+GALD G + Y+ ++ + + +LIDMY KCGA+++ L VF
Sbjct: 1028 EITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFE 1087
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
E + D + W ++I GLA++G +L LF+ M G+ P TF+G+L ACAH G+V
Sbjct: 1088 --EMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVV 1145
Query: 315 MEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
+ +F+S+ + G+ P+ +HY C+VD LSR+G + AYEFI +MP++P + LL+
Sbjct: 1146 DKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLS 1205
Query: 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
HG L LAEI KKL+E P + G Y+ SN YA RW++ R ME V K
Sbjct: 1206 ASQVHGNLHLAEIATKKLLETDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKP 1265
Query: 434 PGWSFVE 440
S VE
Sbjct: 1266 SASSSVE 1272
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/330 (31%), Positives = 160/330 (48%), Gaps = 61/330 (18%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
NI + ++ + P + +WN +IRG+S++ P ++I + M + ++LTYPFL K
Sbjct: 745 NILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLK 804
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A R++ VHA++ K G++SDLF+SN+LIH
Sbjct: 805 ACARISNVS-CTTVHARVLKLGFDSDLFVSNALIH------------------------- 838
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
GYA E+ AR+VF+ M ER++VSW++LI GY +C Y E LV+FEEMR
Sbjct: 839 ------GYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADV 892
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
K + VT+V V+ AC LG M+ Y+ + + + + L +LIDMY + + A
Sbjct: 893 KGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARR 952
Query: 252 VFHGVEKH-----------------------------QSDVLIWNAMIGGLAMHGFVKES 282
VF + DV+ W +MI + G ++
Sbjct: 953 VFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKA 1012
Query: 283 LELFTEMQIVGITPDEITFLGLLSACAHGG 312
+ LF EM + + PDEIT +LSACAH G
Sbjct: 1013 VRLFQEMMVTKVKPDEITVASVLSACAHIG 1042
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 33/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN+ + K+ + + + W ++I YS++ K++ LF +M+ V PD +T +
Sbjct: 976 GNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVL 1035
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + ++ AVH I K +D+++ N+LI MY CG + VF+ M + SV
Sbjct: 1036 SACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSV 1095
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW S++ G A G + A +F LM +R+ G
Sbjct: 1096 SWTSVIAGLAVNGSADSALNLFSLM------------------------------LRE-G 1124
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ T V VL ACAH G +D+G M GL+ + ++D+ ++ G + A
Sbjct: 1125 VRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRA 1184
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
F DV++W ++ +HG
Sbjct: 1185 Y-EFIKRMPMDPDVVVWRILLSASQVHG 1211
>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 602
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 159/417 (38%), Positives = 242/417 (58%), Gaps = 36/417 (8%)
Query: 29 FYWNTVIRGYSKSKNPN---KSISLFVKMLRAGVSPDHLTYPFLAKASGRL-AKRELAVA 84
F NT+IR ++ S + ++ + F MLR V P+ T+PFL KA L ++ +
Sbjct: 89 FLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQ 148
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
HA K G+ +D ++SN+LIHMY SC F G G
Sbjct: 149 AHAAALKFGFATDQYVSNTLIHMY-SC---------FGG-------------------GF 179
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
+ AR VF+ MP+ + V+WSA+I GYV+ G +A+ +F EM+ G +A+EVT++ VL A
Sbjct: 180 LGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAA 239
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
LGAL+ R + R++ +G+ ++ L +LID AKCG + A+ VF G++ Q V+
Sbjct: 240 ATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQ--QRSVV 297
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
W ++I LAM G KE++ +F EM++ G+ PD++ F+G+L+AC+H G+V E +F ++
Sbjct: 298 SWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAM 357
Query: 325 G-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+ G+ PK EHY CMVD RAG V A EF+ MP++P + SL++ C HG+L+L
Sbjct: 358 KVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLEL 417
Query: 384 AEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
E + + L+ P H+ Y+ LSNV+A+ +RW E R M RG+KK PG S VE
Sbjct: 418 GESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVE 474
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 59/147 (40%), Gaps = 2/147 (1%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
L+ G++D + V + + W +VI + +++ +F +M AGV PD + +
Sbjct: 275 LAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAF 334
Query: 67 PFLAKASGRLAKRELAVA-VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ A + A + G E + ++ M+G G + A E MP
Sbjct: 335 IGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMP 394
Query: 126 TKMS-VSWNSMLDGYAKCGEMNMARQV 151
+ + V W S++ G + + +
Sbjct: 395 IQPNPVIWRSLVSACRAHGRLELGESI 421
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 162/436 (37%), Positives = 248/436 (56%), Gaps = 36/436 (8%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G + + +V +S + WN++I GYS+ ++ LF +M AG PD +T
Sbjct: 172 SRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLV 231
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A G L L + + + + + F+ ++LI MYG
Sbjct: 232 SILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYG------------------ 273
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
KCG+++ AR+VF+ M +++VV+W+A+I GY + G EA+++F MR
Sbjct: 274 -------------KCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMR 320
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
+ G +++TLV VL ACA +GALD G+ + Y ++GL + + T+LIDMYAKCG++
Sbjct: 321 ESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLD 380
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG--ITPDEITFLGLL 305
+AL VF + Q + + WNAMI LA HG +ESL LF M G + P++I+F+G+L
Sbjct: 381 DALRVFEDMP--QKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVL 438
Query: 306 SACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
SAC H GLV E F + G+VPK EH++CMVD L+RAG V EA++FI +MP +P
Sbjct: 439 SACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPD 498
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
+LG+LL C +D++E V L+E++P + G Y+ S ++A KRWD++ R
Sbjct: 499 EVVLGALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVL 558
Query: 425 METRGVKKYPGWSFVE 440
M RGV K PG S++E
Sbjct: 559 MRQRGVTKTPGCSWIE 574
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 119/423 (28%), Positives = 212/423 (50%), Gaps = 40/423 (9%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKS-KNPNKSISLFVKMLRAGVSPDHLTYPF 68
L + + + + S + P + +N +IRG + + + N +I + +M G+ P++ TYPF
Sbjct: 72 LKDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPF 131
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+ A L H+ + K+G +D + +SLI MY
Sbjct: 132 VFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMY-------------------- 171
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
++CGE+ AR+VF+ + E+++VSW+++I GY + G +A+ +F EMRD
Sbjct: 172 -----------SRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRD 220
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G + +E+TLVS+L AC LG L G + ++++ + L + ++LI MY KCG +
Sbjct: 221 AGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSS 280
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A VF + K DV+ WNAMI G A +G E++ LF+ M+ G+ PD+IT +G+LSAC
Sbjct: 281 ARRVFDRMVK--KDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSAC 338
Query: 309 AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
A G + + +RG+ ++D ++ G + +A MP + S
Sbjct: 339 ASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVS-W 397
Query: 369 GSLLTGCMNHGK----LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
++++ HG+ L L + + K+ ++P+ D ++G+ + DE R +
Sbjct: 398 NAMISALAFHGRPQESLSLFKRMSKEGGAVRPN-DISFIGVLSACVHAGLVDEGRQLFDL 456
Query: 425 MET 427
M +
Sbjct: 457 MSS 459
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 161/450 (35%), Positives = 256/450 (56%), Gaps = 12/450 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPN-----KSISLFVKML 55
+L + SY G+ Y+ V + NP + +N +IR Y ++ + K++ L+ +M
Sbjct: 59 LLYVCSFSYYGSFSYATNVFHMIKNPDLRAYNIMIRAYISMESGDDTHFCKALMLYKQMF 118
Query: 56 RAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV 115
+ P+ LT+PFL K + A+H Q+ K G+ D++++NSLI +Y + G +
Sbjct: 119 CKDIVPNCLTFPFLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLS 178
Query: 116 YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
AR+VFD M V+WNSM+ G + G ++MA +F M RN+++W+++I G + G
Sbjct: 179 NARKVFDEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGS 238
Query: 176 YKEALVIFEEMR---DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPL 232
KE+L +F EM+ D K +++T+ SVL ACA LGA+D G+ + Y+ G+ + +
Sbjct: 239 AKESLELFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVI 298
Query: 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292
T+L++MY KCG +++A +F E + D W MI A+HG ++ F EM+
Sbjct: 299 GTALVNMYGKCGDVQKAFEIFE--EMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKA 356
Query: 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTE 351
G+ P+ +TF+GLLSACAH GLV + + F + + + P+ HYACMVD LSRA E
Sbjct: 357 GVKPNHVTFVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDILSRARLFDE 416
Query: 352 AYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI 411
+ I MP++P + G+LL GC HG ++L E V L++L+P + YV ++YA
Sbjct: 417 SEILIRSMPMKPDVYVWGALLGGCQMHGNVELGEKVVHHLIDLEPHNHAFYVNWCDIYAK 476
Query: 412 FKRWDEARTTREAM-ETRGVKKYPGWSFVE 440
+D A+ R M E R KK PG S +E
Sbjct: 477 AGMFDAAKRIRNIMKEKRIEKKIPGCSMIE 506
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 162/443 (36%), Positives = 251/443 (56%), Gaps = 36/443 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ F A+S G+++Y+ V + N F WNT+IRG+ +++ + + +ML G++
Sbjct: 93 LIDFCAVSDHGDMNYAVVVFDRIENADGFLWNTMIRGFGRNRKLLMAFEFYKRMLEKGIA 152
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
D+ T+ FL K +G+L L +H I K G +S +++ N+LIHMYG D+
Sbjct: 153 ADNFTFSFLLKMTGQLGSIMLGKQLHVNILKLGLDSHVYVRNTLIHMYGRLKDV------ 206
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
N+AR +F+ +P+ ++V+W+A+ID +V CG Y EAL
Sbjct: 207 -------------------------NIARNLFDELPKTDLVAWNAVIDCHVSCGMYNEAL 241
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F +M G + +E TLV + AC+ LGALD GR + ++ T+ + SLIDMY
Sbjct: 242 DLFVQMLQSGVEPDEATLVVTISACSALGALDCGRWVHSHVNSNDRGKTIAVFNSLIDMY 301
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI-TPDEI 299
AKCGA++ A +F+ V +++ WN MI GLA HG +++L LF+ M + TPD +
Sbjct: 302 AKCGAVEYAREMFNAVSG--KNIVTWNTMIMGLATHGDAEDALTLFSNMLAERVETPDGV 359
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
TFL +L AC +GG V E +F + K + P +HY MVD L RAG V EAY+ I
Sbjct: 360 TFLAVLCACNYGGKVEEGRRYFDLMTKHFNIQPTLKHYGSMVDILGRAGFVEEAYQLIKS 419
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP+E A + +LL C HG ++L E V ++E+ DH YV L+N+YA +W+E
Sbjct: 420 MPMECNAVIWRTLLAACQMHGNVELGERVSSHVLEIVADHSSDYVLLANMYASSGQWNEM 479
Query: 419 RTTREAMETRGVKK-YPGWSFVE 440
TR++M +GV+K PG S++E
Sbjct: 480 IKTRKSMHRKGVEKPEPGNSYLE 502
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 117/272 (43%), Gaps = 35/272 (12%)
Query: 85 VHAQIAKTGYESDLFISNSLIHM--YGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+HA I + G++ +LF+ LI GD+ YA VFD + WN+M+ G+ +
Sbjct: 74 LHASIIRLGFDQNLFVIGKLIDFCAVSDHGDMNYAVVVFDRIENADGFLWNTMIRGFGRN 133
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
++ MA + ++ M E+ G A+ T +L
Sbjct: 134 RKLLMAFEFYKRMLEK-------------------------------GIAADNFTFSFLL 162
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
LG++ G+ + ++ GL + ++ +LI MY + + A +F + K +D
Sbjct: 163 KMTGQLGSIMLGKQLHVNILKLGLDSHVYVRNTLIHMYGRLKDVNIARNLFDELPK--TD 220
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
++ WNA+I G E+L+LF +M G+ PDE T + +SAC+ G + +
Sbjct: 221 LVAWNAVIDCHVSCGMYNEALDLFVQMLQSGVEPDEATLVVTISACSALGALDCGRWVHS 280
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
+ + ++D ++ G V A E
Sbjct: 281 HVNSNDRGKTIAVFNSLIDMYAKCGAVEYARE 312
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 150/432 (34%), Positives = 246/432 (56%), Gaps = 2/432 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG+++ + K+ + + WNT++ Y+K N++I L+ R + + ++ +
Sbjct: 142 LGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGV 201
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+L + +LA VH Q+ G+ S+L +S+S++ Y CG++ AR +FD M K
Sbjct: 202 LILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDI 261
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+W +++ GYAK G+MN A ++F MPE+N VSWSALI GY + EAL F +M
Sbjct: 262 HAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKF 321
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G + T S LCACA + AL G+ + Y+I + +SLIDMY+KCG ++ +
Sbjct: 322 GINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEAS 381
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VFH + Q DV++WN MI LA +G ++++++F +M G+ PD ITF+ +LSAC+
Sbjct: 382 CCVFHLMGNKQ-DVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACS 440
Query: 310 HGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E FFK++ G+ P EHY+C++D L RAG E + M +P +
Sbjct: 441 HSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDRVW 500
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+LL C H ++L V ++++EL+P YV L+++YA +W+ RE M+ +
Sbjct: 501 SALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEK 560
Query: 429 GVKKYPGWSFVE 440
++K G S+++
Sbjct: 561 FIRKERGISWID 572
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 129/255 (50%), Gaps = 30/255 (11%)
Query: 85 VHAQIAKTGYES-DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
VH + TG++ ++N LI MY CG V AR+VFD M + SWN ML GYAK G
Sbjct: 84 VHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLG 143
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
++N AR++F+ M E++VVSW+ ++ Y K G + EA+ ++ + R + N + VL
Sbjct: 144 DVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLI 203
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH--------- 254
C L L + + ++ G L L +S++D YAKCG ++ A +F
Sbjct: 204 LCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHA 263
Query: 255 ------GVEK-----------HQ---SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
G K HQ + + W+A+I G A + E+L+ FT+M GI
Sbjct: 264 WTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGI 323
Query: 295 TPDEITFLGLLSACA 309
P++ TF L ACA
Sbjct: 324 NPEQYTFSSCLCACA 338
>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
Length = 802
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 156/415 (37%), Positives = 235/415 (56%), Gaps = 7/415 (1%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I GY S ++ LF +M+ V D T+ + A + +VH QI
Sbjct: 262 WNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQII 321
Query: 91 KTGY----ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
+ E+ L ++N+L+ Y CG+I AR +FD M K VSWN++L GY + ++
Sbjct: 322 RLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLD 381
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
A +VFE MP +N +SW ++ GYV G ++AL +F +MR K + T + AC
Sbjct: 382 KAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACG 441
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
LGAL G+ + +++ G + +LI MYA+CGA+KEA ++F + D + W
Sbjct: 442 ELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMF--LVMPNIDSVSW 499
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
NAMI L HG +E+LELF M GI PD I+FL +L+AC H GLV E + +F+S+ +
Sbjct: 500 NAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKR 559
Query: 327 R-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
G++P +HY ++D L RAG++ EA + I MP EPT S+ ++L+GC G ++L
Sbjct: 560 DFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGA 619
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+L ++ P HDG Y+ LSN Y+ W +A R+ M RGVKK PG S++E
Sbjct: 620 HAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIE 674
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 170/355 (47%), Gaps = 19/355 (5%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFLAKASGRLAKREL--AVAVHAQ 88
N VI Y+++ + ++++F +L +G + PD ++ L A G L + +H
Sbjct: 125 NAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCS 184
Query: 89 IAKTGYESDLFISNSLIHMYGSCGD---IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
+ K+G L + N+L+ +Y C AR+V D MP K ++W +M+ GY + G++
Sbjct: 185 VLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDV 244
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
AR VFE + + V W+A+I GYV G EA +F M +E T SVL AC
Sbjct: 245 GAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSAC 304
Query: 206 AHLGALDQGR----MMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
A++G G+ ++R + LP+ +L+ Y+KCG I A +F +
Sbjct: 305 ANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMT--LK 362
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
DV+ WN ++ G + +++E+F EM +E++++ ++S HGG +A F
Sbjct: 363 DVVSWNTILSGYVESSCLDKAVEVFEEMPY----KNELSWMVMVSGYVHGGFAEDALKLF 418
Query: 322 KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF---ICQMPLEPTASMLGSLLT 373
+ + P YA + A G + + I Q+ E + S +L+T
Sbjct: 419 NKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALIT 473
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
TSL+ YA + A+ F V + D ++ NA+I A ++ +F + G
Sbjct: 92 TSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151
Query: 294 -ITPDEITFLGLLSACAH 310
+ PD+ +F LLSA H
Sbjct: 152 SLRPDDYSFTALLSAGGH 169
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 151/435 (34%), Positives = 252/435 (57%), Gaps = 4/435 (0%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G ++Y+ ++ + ++ + WN++I GY ++ +++ LF +M G+ PD +
Sbjct: 525 SECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLS 584
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ + L+ + +H I + E + + L+ MY CG + YA +V+D K
Sbjct: 585 SMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKK 644
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+ N M+ + G N A+ +F+ M +RN W++++ GY G KE+ F EM
Sbjct: 645 DVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEML 704
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG-LSLTLPLQTSLIDMYAKCGAI 246
+ + + +T+V+++ C+ L AL+ G + +I KG ++ ++ L+T+L+DMY+KCGAI
Sbjct: 705 ESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAI 764
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+A VF + + +++ WNAMI G + HG KE+L L+ EM G+ P+E+TFL +LS
Sbjct: 765 TKARTVFDNM--NGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILS 822
Query: 307 ACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC+H GLV E F S+ + + K+EHY CMVD L RAG++ +A EF+ +MP+EP
Sbjct: 823 ACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEV 882
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
S G+LL C H +D+ + ++L EL P + G YV +SN+YA RW E R+ M
Sbjct: 883 STWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMM 942
Query: 426 ETRGVKKYPGWSFVE 440
+ +GVKK PG S++E
Sbjct: 943 KMKGVKKDPGVSWIE 957
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 190/404 (47%), Gaps = 70/404 (17%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
G +D + L + + WN VI GY K + ++ +F +ML+ GV PD+ T+
Sbjct: 223 FGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASA 282
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+ G L R+ VH+++ G++ D F+ N+LI MY
Sbjct: 283 LRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMY--------------------- 321
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
AKC + +VF+ M ERN V+W+++I + G + +ALV+F M++
Sbjct: 322 ----------AKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQES 371
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G K+N L S+L A A L + +GR + +++ L+ + L ++L+DMY+KCG ++EA
Sbjct: 372 GYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEA 431
Query: 250 LIVFHG-VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSA 307
VF +E+++ + +NA++ G G +E+LEL+ +MQ GI PD+ TF LL+
Sbjct: 432 HQVFRSLLERNE---VSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTL 488
Query: 308 CA-----------HGGLV-----------MEAWYFFKSLGK---------RGMVPKSEHY 336
CA H L+ E + + G+ R + +
Sbjct: 489 CANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSW 548
Query: 337 ACMVDALSRAGQVTEAYEFICQMPL---EPTASMLGSLLTGCMN 377
M++ + G+ EA QM L +P L S+L+ C++
Sbjct: 549 NSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVS 592
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/403 (23%), Positives = 168/403 (41%), Gaps = 63/403 (15%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTY 66
S G ++ + +V L +N ++ GY + +++ L+ M G+ PD T+
Sbjct: 423 SKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTF 482
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
L +HA + + ++ + L+HMY
Sbjct: 483 TTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMY------------------ 524
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
++CG +N A+++F M ERN SW+++I+GY + G+ +EAL +F++M
Sbjct: 525 -------------SECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQM 571
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ G K + +L S+L +C L +GR + +++ + LQ L+DMYAKCG++
Sbjct: 572 QLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSM 631
Query: 247 KEALIVFHGVEK-----------------------------HQSDVLIWNAMIGGLAMHG 277
A V+ K Q + +WN+++ G A G
Sbjct: 632 DYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKG 691
Query: 278 FVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHY- 336
KES F EM I D +T + +++ C+ + + K+G V S
Sbjct: 692 LKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLE 751
Query: 337 ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+VD S+ G +T+A M + S ++++G HG
Sbjct: 752 TALVDMYSKCGAITKARTVFDNMNGKNIVS-WNAMISGYSKHG 793
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 114/458 (24%), Positives = 181/458 (39%), Gaps = 87/458 (18%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
L ++ Y+ K+ + + WNT+I Y++ + + + L+ +M +G D T+P +
Sbjct: 122 LDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSV 181
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA + + + + K G +LF+ +L+
Sbjct: 182 IKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALV------------------------ 217
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
DGYA+ G M+ A + + +VV+W+A+I GYVK ++EA IF+ M +
Sbjct: 218 -------DGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKI 270
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G + T S L C L + D G+ + +I G + +LIDMYAKC +
Sbjct: 271 GVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESC 330
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
L VF E + + + WN++I A G ++L LF MQ G + +L A A
Sbjct: 331 LKVFD--EMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASA 388
Query: 310 -----------HG------------------------GLVMEAWYFFKSLGKRGMVPKSE 334
HG G+V EA F+SL +R V
Sbjct: 389 GLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVS--- 445
Query: 335 HYACMVDALSRAGQVTEAYEFICQMP----LEPTASMLGSLLTGCMN----------HGK 380
Y ++ + G+ EA E M ++P +LLT C N H
Sbjct: 446 -YNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAH 504
Query: 381 LDLAEIVGKKLVELQPDHDGRYVG-LSNVYAIFKRWDE 417
L A I +VE + H G L+ IF R E
Sbjct: 505 LIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAE 542
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 36/229 (15%)
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCG---DIVYAREVFDGMPTKMSVSWNSMLDGYA 140
++H Q+ GY D ++ ++ +Y G D+ YAR
Sbjct: 92 SIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYAR---------------------- 129
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
++FE MPERN+ +W+ +I Y + DY E L ++ MR G+ +++ T S
Sbjct: 130 ---------KLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPS 180
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
V+ AC + + R + ++ GL+ L + +L+D YA+ G + +A+ +E
Sbjct: 181 VIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEG-- 238
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ V+ WNA+I G +E+ +F M +G+ PD TF L C
Sbjct: 239 TSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCG 287
>gi|147784564|emb|CAN70487.1| hypothetical protein VITISV_008663 [Vitis vinifera]
Length = 1302
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 172/456 (37%), Positives = 247/456 (54%), Gaps = 49/456 (10%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN VI+ NP+++I +V+M R G D+ T+P L KA+ L+ + A+H Q
Sbjct: 826 WNRVIKRRVSQGNPDQAILAYVEMKRVGFHADNFTFPVLLKAASSLSSCCIGFALHGQAM 885
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
KTG+ F+ +L+ MY + G I +A +VF+ M K V WNSML YA G+M+ A +
Sbjct: 886 KTGFSGHCFVGTALLDMYXAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASXGQMDNAMK 945
Query: 151 VFELMPERNVVSWSALIDGYVKCG------------------------------------ 174
+F+ MP +++ S++ +I GY K G
Sbjct: 946 LFDNMPLKDLASFNIMISGYAKIGRKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNA 1005
Query: 175 -------DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS 227
K A+ +F+EM+ +A+ +T+ VL ACAHLG L +G M Y D L+
Sbjct: 1006 RNLFDVMPKKNAVDLFDEMKAGNHEADHLTVALVLSACAHLGWLGKGTEMHVYAQDHRLA 1065
Query: 228 LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFT 287
+ + TSLIDMYAKCG I+ +L VF+ + D+ WNA+I GLA+HG+ +++L
Sbjct: 1066 SSPHVATSLIDMYAKCGTIQRSLEVFY--KSQVKDIYCWNAIISGLALHGYGHAAVKLLD 1123
Query: 288 EMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRA 346
+M+ GI PDEITF+GLLSAC+HG LV E F + K G+ PK EHY CMVD L RA
Sbjct: 1124 KMRDNGIRPDEITFIGLLSACSHGSLVQEGCRLFDCMEKEFGLPPKLEHYGCMVDLLGRA 1183
Query: 347 GQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH--DGRYVG 404
G + A++ I MP EP S+LG+LL C+ H L+ E V L+ + H DG ++
Sbjct: 1184 GFLDPAFQLIKAMPFEPGESILGALLGACVIHQDLETGEKV-IBLITSKAHHVSDGEFMM 1242
Query: 405 LSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
N+YA +W EA RE M G+ K G S +E
Sbjct: 1243 FVNLYASCGQWKEANRWRERMNESGIAKTAGGSTIE 1278
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 163/448 (36%), Positives = 256/448 (57%), Gaps = 41/448 (9%)
Query: 1 MLSFSALSYLGN-IDYSCKVL-SHLSNPRI---FYWNTVIRGYSKS-KNPNKSISLFVKM 54
+ F+++S L + DY+ L S ++ R+ F +NT+IR Y+++ + +K+++L+ M
Sbjct: 64 LTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIM 123
Query: 55 LRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSC-GD 113
L + P+ TYPF+ KA L L VH + K G++ D+ + N+++HMY C G
Sbjct: 124 LHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGG 183
Query: 114 IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKC 173
I AR+VFD MP SV+W++M+ GYA+ G
Sbjct: 184 INSARKVFDEMPKSDSVTWSAMIGGYARVGRST--------------------------- 216
Query: 174 GDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
EA+ +F EM+ +E+T+VS+L AC LGAL+ G+ + Y+ + + +
Sbjct: 217 ----EAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVS 272
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
+LIDM+AKCG I +AL +F + ++ ++ W ++I G+AMHG +E+ LF EM G
Sbjct: 273 NALIDMFAKCGDISKALKLFRAM--NEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSG 330
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEA 352
+ PD++ F+GLLSAC+H GLV +F S+ K+ +VPK EHY CMVD R G V EA
Sbjct: 331 VAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEA 390
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412
EF+ MP+EP +L +L++ C HG+ L E + K L++ +P H+ YV LSN+YA
Sbjct: 391 LEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKT 450
Query: 413 KRWDEARTTREAMETRGVKKYPGWSFVE 440
W++ RE ME +G+KK PG + +E
Sbjct: 451 LSWEKKTKIREVMEVKGMKKVPGSTMIE 478
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 167/446 (37%), Positives = 249/446 (55%), Gaps = 43/446 (9%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSK----SKNPNKSISLFVKMLR 56
+++F ALS GNI+Y+ V + + +P IF WN++I+GYS+ SK P I LF K+
Sbjct: 28 IVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEP---IFLFKKLTE 84
Query: 57 AGVS-PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV 115
G P+ T F+ KA + + VH+ + K G+ S LF+ SL++ YG C +I
Sbjct: 85 TGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIG 144
Query: 116 YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
+AR+VF+ MP + V+W +M+ G+A+ G ++
Sbjct: 145 FARKVFEEMPVRNLVAWTAMISGHARVGAVD----------------------------- 175
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT-LPLQT 234
EA+ +F EM+ G + + +TLVSV+ ACA GALD G + Y I+K LT L L T
Sbjct: 176 --EAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAY-IEKYFVLTDLELST 232
Query: 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
+L+DMYAKCG I+ A VF V D W++MI G A HG +++++ F +M +
Sbjct: 233 ALVDMYAKCGCIERAKQVF--VHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEV 290
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
TPD +TFL +LSACAHGGLV F+ + + G+ P EHY C VD L R+G V EAY
Sbjct: 291 TPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAYR 350
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414
M + P A+ SLL GC L+L EIV + L+EL+P + Y+ +SN+Y+ +
Sbjct: 351 ITTTMKIPPNAATWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQ 410
Query: 415 WDEARTTREAMETRGVKKYPGWSFVE 440
W++ R+ M+ + +K PG S +E
Sbjct: 411 WEKMSELRKVMKEKCIKPVPGCSSIE 436
>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
Length = 589
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 177/493 (35%), Positives = 260/493 (52%), Gaps = 69/493 (13%)
Query: 14 DYSCKVLSHLSNP---RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
D++ V +HL+ F WNT++R ++ + +P +S+ F +M R V+PD T+P +
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVRLHAAA-SPRRSLLYFSRMRRVAVAPDAYTFPAVL 123
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFIS----------------------------- 101
KA G + + VH + +TG ++DLF
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVRDLVS 183
Query: 102 -NSLIHMYGSCGDIVYA--------------------------------REVFDGMPTKM 128
NS++ Y CG++ A RE+FD MP +
Sbjct: 184 WNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRD 243
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
V WNSM+DGYA+ G M+ AR +FE MPERNV+SWS +IDGYV+ G+ EAL F+ M
Sbjct: 244 LVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLS 303
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G K + V V + ACA LGAL+QGR + Y+ K + + +QT+LIDMY KCG +
Sbjct: 304 CGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDL 363
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A ++F + K V+ WN MI GL HG+ ++++LF +M+ D+++ L +L++C
Sbjct: 364 AKLIFESMPK--KSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSVLAVLTSC 421
Query: 309 AHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
H GLV E F + K G+ PK EHY ++D L RAG+V +A I MP+EPT +
Sbjct: 422 THAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPEL 481
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
GSLL C +H ++LAE+ ++L L D G YV LSN+YA WD+ R+ M
Sbjct: 482 WGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSA 541
Query: 428 RGVKKYPGWSFVE 440
G+KK G S +E
Sbjct: 542 EGMKKNIGRSVIE 554
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 110/241 (45%), Gaps = 34/241 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + + + + W+ VI GY + PN+++ F +ML G+ PD +
Sbjct: 258 GRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLSCGIKPDRVAAVGAV 317
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A +L E +H+ + K D+ + +LI MY CG + A+ +F+ MP K V
Sbjct: 318 AACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVV 377
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WN M+ G G + L +A+ +F +M
Sbjct: 378 TWNVMIVGLGTHG--------YGL-----------------------DAIKLFNQMETER 406
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT--SLIDMYAKCGAIKE 248
+ +++++++VL +C H G + +G + + Y ++K L L ++ +LID+ + G + +
Sbjct: 407 APMDDLSVLAVLTSCTHAGLVSEG-LGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQ 465
Query: 249 A 249
A
Sbjct: 466 A 466
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 158/431 (36%), Positives = 246/431 (57%), Gaps = 35/431 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN++ + +V + + W ++I GY++ + S+ LF +M + G+SPD T +
Sbjct: 300 GNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTIL 359
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A E VH I + +SDLF+SN+L+ MY
Sbjct: 360 HACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMY---------------------- 397
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
AKCG M A VF M +++VSW+ +I GY K EAL +F EM+
Sbjct: 398 ---------AKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQ-YN 447
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
SK N +T+ +L ACA L AL++G+ + +++ G SL + +L+DMY KCGA+ A
Sbjct: 448 SKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLAR 507
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
++F + + D++ W MI G MHG+ E++ F EM+ GI PDE++F+ +L AC+H
Sbjct: 508 LLFDMIP--EKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSH 565
Query: 311 GGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GL+ E W FF + + PKSEHYAC+VD L+RAG +++AY+FI MP+EP A++ G
Sbjct: 566 SGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWG 625
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL GC + + LAE V + + EL+P++ G YV L+N+YA ++W+E + RE + RG
Sbjct: 626 ALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRG 685
Query: 430 VKKYPGWSFVE 440
++K PG S++E
Sbjct: 686 LRKNPGCSWIE 696
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 161/318 (50%), Gaps = 23/318 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP--------- 61
G++ ++ ++N ++F WN ++ GY+K N +S+SLF +M G+
Sbjct: 150 GDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFD 209
Query: 62 ---DHLTYPFLAKASGRLAK--RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
D + + SG ++ E + + Q+ G +DL S++ + G ++
Sbjct: 210 ELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLL 269
Query: 117 AREVFDGMPTKMSVSW-----NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV 171
R G K S N +LD Y+K G +N A QVFE M ER+VVSW+++I GY
Sbjct: 270 GR-ALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYA 328
Query: 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
+ G ++ +F EM G + T+ ++L ACA G L+ G+ + Y+ + + L
Sbjct: 329 REGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLF 388
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
+ +L+DMYAKCG++ +A VF E D++ WN MIGG + + E+L LF EMQ
Sbjct: 389 VSNALMDMYAKCGSMGDAHSVFS--EMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQ- 445
Query: 292 VGITPDEITFLGLLSACA 309
P+ IT +L ACA
Sbjct: 446 YNSKPNSITMACILPACA 463
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 148/300 (49%), Gaps = 20/300 (6%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG- 143
+H+ I E D + + L+ MY +CGD+ R +FD + + WN +++GYAK G
Sbjct: 123 IHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGN 182
Query: 144 -----------------EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ AR++F+ + +R+V+SW+++I GYV G ++ L +FE+M
Sbjct: 183 FRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQM 242
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+G + T+VSV+ C++ G L GR + Y I L L L+DMY+K G +
Sbjct: 243 LLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNL 302
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
A+ VF + + V+ W +MI G A G S+ LF EM+ GI+PD T +L
Sbjct: 303 NSAIQVFETM--GERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILH 360
Query: 307 ACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
ACA GL+ + + M ++D ++ G + +A+ +M ++ S
Sbjct: 361 ACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVS 420
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 26/243 (10%)
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
T SVL CA L ++ GR + + + + L + L+ MY CG ++E +F V
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
+ V +WN ++ G A G +ESL LF M+ +GI V
Sbjct: 163 ANEK--VFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRR-----------------VES 203
Query: 317 AWYFFKSLGKRGMVPKSEHYACMV-DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
A F LG R ++ + + V + LS G + +E + + + + + S++ GC
Sbjct: 204 ARKLFDELGDRDVISWNSMISGYVSNGLSEKG--LDLFEQMLLLGINTDLATMVSVVAGC 261
Query: 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSN-VYAIFKRWDEARTTREAMETRGVKKYP 434
N G L L + ++ G+ + L+N + ++ + + + ET G +
Sbjct: 262 SNTGMLLLGRALHGYAIKASF---GKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVV 318
Query: 435 GWS 437
W+
Sbjct: 319 SWT 321
>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
Length = 1349
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 151/438 (34%), Positives = 255/438 (58%), Gaps = 4/438 (0%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L+ +G + + +L+ + W ++I YS++ +++ F ML G++PD
Sbjct: 181 ISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDD 240
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T + A +L EL ++H+ + + G + +LI MY CGD +AREVFD
Sbjct: 241 VTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDA 300
Query: 124 MPT-KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ + SWN+++DGY K G +++AR +F+ M R++++++++I GY+ G +EAL++
Sbjct: 301 VGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLL 360
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F MR + + T+VS+L ACA LGAL QGR + + + + + + T+L+DMY K
Sbjct: 361 FMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMK 420
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG + EA IVF + K DV W AMI GLA +G K LE F +M+ G P+ ++++
Sbjct: 421 CGRVNEATIVFQRMGKR--DVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYI 478
Query: 303 GLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+L+AC+H L+ E +F + + P+ EHY CM+D L R+G + EA + + MP+
Sbjct: 479 AVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPM 538
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
+P + + S+L+ C H ++DLA+ + L++++PD D YV L N+ ++W++A
Sbjct: 539 QPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKI 598
Query: 422 REAMETRGVKKYPGWSFV 439
R ME R VKK G+S V
Sbjct: 599 RMLMEERQVKKTAGYSSV 616
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 191/375 (50%), Gaps = 20/375 (5%)
Query: 29 FYWNTVIRGY----SKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKREL-AV 83
F ++T +R + S +P+ LF +M RA V PD T+ FL K S R L
Sbjct: 68 FLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRALLCT 127
Query: 84 AVHAQIAKTGYESDL-FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+HA +T S F++NSLIHMY G R FD +P K +VSW ++ G AK
Sbjct: 128 MLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKM 187
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
G ++ AR + P R+V+SW++LI Y + KEA+ F+ M G ++VT++ VL
Sbjct: 188 GMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVL 247
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV---EKH 259
AC+ L L+ G + + +KG+S++ L +LIDMYAKCG A VF V +
Sbjct: 248 SACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRP 307
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
QS WNA+I G HG V + LF +M++ I ITF +++ H G + EA
Sbjct: 308 QS----WNAIIDGYCKHGHVDVARSLFDQMEVRDI----ITFNSMITGYIHSGQLREALL 359
Query: 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTE--AYEFICQMPLEPTASMLGS-LLTGCM 376
F ++ + + + ++ A + G + + A ++ L T +G+ LL M
Sbjct: 360 LFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYM 419
Query: 377 NHGKLDLAEIVGKKL 391
G+++ A IV +++
Sbjct: 420 KCGRVNEATIVFQRM 434
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/437 (24%), Positives = 193/437 (44%), Gaps = 38/437 (8%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S +G+ + K L+ + + + WN+++ Y+ + +++ +ML G P ++
Sbjct: 942 SAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFV 1001
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYE-SDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
L SG+ +L V +H + K G+ S + + +LI MYG C
Sbjct: 1002 SLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCC-------------- 1047
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
C + ++A +F +P + ++LI ++C + AL I M
Sbjct: 1048 ---------------CFDHSLA--IFNEIPSIALECCNSLITSSLRCNMFDAALEILHCM 1090
Query: 187 RDVGSKANEVTLVSVLCACAHLGA--LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
G ++VT + + A + + L +M+ ++ G + + + +SLI YA G
Sbjct: 1091 IVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAG 1150
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+ + ++F G+ +V+ + A+I A +G ++ELF +M G+ PD +TFL
Sbjct: 1151 QLSSSHLIFEGLL--DPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCA 1208
Query: 305 LSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
++ C G+ E + + R + P H+ACMV+ LSR G V EA E + Q PL
Sbjct: 1209 IAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRH 1268
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
SLL C HG+ L + L+++ + +SN + + A +E
Sbjct: 1269 YTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSNFFNDIGDRETALRIKE 1328
Query: 424 AMETRGVKKYPGWSFVE 440
+ VKK G S +E
Sbjct: 1329 MTNVKEVKK-SGHSLIE 1344
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 163/444 (36%), Positives = 242/444 (54%), Gaps = 16/444 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + + + +F WN ++ GY+ K++++F KM+ GV P+ +T
Sbjct: 160 GRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAV 219
Query: 71 KASGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L+ +H K +SDL + NSL+ Y C + AR F +
Sbjct: 220 SACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDL 279
Query: 130 VSWNSML--DGYAKCGE----------MNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
VSWN+ML G+ + G+ M++A VF + R+VV W+++I + G
Sbjct: 280 VSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSV 339
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
AL + EM + N VT+VS L AC+ L AL QG+ + +++I GL + SLI
Sbjct: 340 NALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLI 399
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
DMY +CG+I+++ +F + Q D++ WN MI MHGF +++ LF + + +G+ P+
Sbjct: 400 DMYGRCGSIQKSRRIFDLMP--QRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPN 457
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFI 356
ITF LLSAC+H GL+ E W +FK + M P E YACMVD LSRAGQ E EFI
Sbjct: 458 HITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFI 517
Query: 357 CQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWD 416
+MP EP A++ GSLL C H DLAE + L EL+P G YV ++N+Y+ RW+
Sbjct: 518 EKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWE 577
Query: 417 EARTTREAMETRGVKKYPGWSFVE 440
+A R M+ RGV K PG S++E
Sbjct: 578 DAAKIRCLMKERGVTKPPGCSWIE 601
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 182/401 (45%), Gaps = 49/401 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + ++ +S +F W ++ Y + ++I LF M+ GV PDH +P +
Sbjct: 59 GCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVF 118
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA L + V+ + G+E NS +
Sbjct: 119 KACSELKNYRVGKDVYDYMLSIGFEG-----NSCVK------------------------ 149
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
S+LD + KCG M++AR+ FE + ++V W+ ++ GY G++K+AL +F +M G
Sbjct: 150 --GSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEG 207
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKEA 249
K N +T+ S + AC +L L GR + Y I + L L + SL+D YAKC +++ A
Sbjct: 208 VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVA 267
Query: 250 LIVFHGVEKHQSDVLIWNAMIG--GLAMHGFVKESLELFTEMQIVG------ITPDEITF 301
F ++ Q+D++ WNAM+ G +G K +LE F M I T D + +
Sbjct: 268 RRKFGMIK--QTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVW 325
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG---QVTEAYEFICQ 358
++SACA G + A + + + + + A S+ Q E ++FI +
Sbjct: 326 NSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIR 385
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399
L+ +L SL+ G + + +++ +L P D
Sbjct: 386 CGLDTCNFILNSLIDMYGRCGSIQKS----RRIFDLMPQRD 422
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 98/180 (54%), Gaps = 2/180 (1%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
+L+ Y + G + AR++F+ M ERNV SW+A+++ Y GDY+E + +F M + G + +
Sbjct: 51 LLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPD 110
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
V AC+ L G+ + YM+ G ++ S++DM+ KCG + A F
Sbjct: 111 HFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFE 170
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
+E DV +WN M+ G G K++L +F +M + G+ P+ IT +SAC + L+
Sbjct: 171 EIEF--KDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLL 228
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 124/275 (45%), Gaps = 37/275 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+AL + + +C V S LS + WN++I ++S ++ L +M + V + +
Sbjct: 299 AALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTV 358
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T A +LA +H I + G ++ FI NSLI MYG CG I +R +FD M
Sbjct: 359 TMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLM 418
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
P + VSWN M+ Y G F + +A+ +F+
Sbjct: 419 PQRDLVSWNVMISVYGMHG--------FGM-----------------------DAVNLFQ 447
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKC 243
+ R +G K N +T ++L AC+H G +++G + M + + + ++D+ ++
Sbjct: 448 QFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRA 507
Query: 244 GAIKEALIVFHGVEK--HQSDVLIWNAMIGGLAMH 276
G E L +EK + + +W +++G +H
Sbjct: 508 GQFNETL---EFIEKMPFEPNAAVWGSLLGACRIH 539
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 172/434 (39%), Positives = 247/434 (56%), Gaps = 37/434 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + KV ++ + WN +I GY ++ +++ LF +M+R V PD T +
Sbjct: 163 GDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVL 222
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + EL +H + H +GS IV
Sbjct: 223 SACAQSGSIELGREIHTLVDDH-------------HGFGSSLKIV--------------- 254
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
N+ + Y+KCG++ +A +FE + ++VVSW+ LI GY YKEAL++F+EM G
Sbjct: 255 --NAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSG 312
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKCGAIK 247
N+VT++SVL ACAHLGA+D GR + Y IDK G++ L+TSLIDMYAKCG I+
Sbjct: 313 ESPNDVTMLSVLPACAHLGAIDIGRWIHVY-IDKRLKGVTNGSALRTSLIDMYAKCGDIE 371
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VF+ + H+S + WNAMI G AMHG + +LF+ M+ GI PD+IT +GLLSA
Sbjct: 372 AAHQVFNSM-MHKS-LSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSA 429
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H GL+ + FKS+ + + PK EHY CM+D L AG EA E I MP+EP
Sbjct: 430 CSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGV 489
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ SLL C HG L+LAE +KL+E++P++ G YV LSN+YA RW++ RE +
Sbjct: 490 IWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLN 549
Query: 427 TRGVKKYPGWSFVE 440
+G+KK PG S +E
Sbjct: 550 GKGMKKVPGCSSIE 563
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 132/402 (32%), Positives = 218/402 (54%), Gaps = 9/402 (2%)
Query: 9 YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPF 68
+ + Y+ V P + WNT++RG + S + + ++V+M+ G P+ T+PF
Sbjct: 29 HFDGLPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPF 88
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
L K+ + E +HAQ+ K G E D + SLI MY G + AR+VFD +
Sbjct: 89 LLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRD 148
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
VS +++ GYA G++ AR+VF+ + ER+VVSW+A+I GYV+ Y+EAL +F+EM
Sbjct: 149 VVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMR 208
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIK 247
+ +E TLVSVL ACA G+++ GR + + D G +L + + I +Y+KCG ++
Sbjct: 209 TNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVE 268
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A +F G+ DV+ WN +IGG KE+L LF EM G +P+++T L +L A
Sbjct: 269 IASGLFEGLS--CKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPA 326
Query: 308 CAHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
CAH G + + + KR G+ S ++D ++ G + A++ M + +
Sbjct: 327 CAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSM-MHKSL 385
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRYVGL 405
S +++ G HG+ + A + ++ + ++PD D VGL
Sbjct: 386 SSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPD-DITLVGL 426
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 142/302 (47%), Gaps = 37/302 (12%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+++ + + LS + WNT+I GY+ +++ LF +MLR+G SP+ +T
Sbjct: 262 SKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTML 321
Query: 68 FLAKASGRLAKRELAVAVHAQIAK--TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ A L ++ +H I K G + + SLI MY CGDI A +VF+ M
Sbjct: 322 SVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMM 381
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
K SWN+M+ G+A G N A F+L F
Sbjct: 382 HKSLSSWNAMIFGFAMHGRANAA---FDL----------------------------FSR 410
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCG 244
MR G + +++TLV +L AC+H G LD GR + + + D ++ L +ID+ G
Sbjct: 411 MRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAG 470
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
KEA + H + + D +IW +++ MHG + E E F + +++ I P+ L
Sbjct: 471 LFKEAEEIIHMMPM-EPDGVIWCSLLKACKMHGNL-ELAESFAQ-KLMEIEPENSGSYVL 527
Query: 305 LS 306
LS
Sbjct: 528 LS 529
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 172/434 (39%), Positives = 245/434 (56%), Gaps = 38/434 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GNI + ++ + + WN +I GY+++ + +++ LF +M++ V PD T +
Sbjct: 146 GNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVL 205
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + EL VH+ I G+ S+L I N+LI
Sbjct: 206 SACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALI------------------------- 240
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
D Y+KCG++ A +FE + ++VVSW+ LI GY YKEAL++F+EM G
Sbjct: 241 ------DLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSG 294
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL---SLTLPLQTSLIDMYAKCGAIK 247
N+VT+VS+L ACAHLGA+D GR + Y IDK L + L+TSLIDMYAKCG I+
Sbjct: 295 ESPNDVTIVSILPACAHLGAIDIGRWIHVY-IDKKLKDVTNAPSLRTSLIDMYAKCGDIE 353
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VF+ + H+S + WNAMI G AMHG +LF+ M+ GI PD+ITF+GLLSA
Sbjct: 354 AAHQVFNSM-LHKS-LSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSA 411
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H G + + FKS+ + + PK EHY CM+D L +G EA E I MP+EP
Sbjct: 412 CSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGV 471
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ SLL C HG L+LAE + L++++P++ G YV LSN+YA WDE R +
Sbjct: 472 IWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLN 531
Query: 427 TRGVKKYPGWSFVE 440
+G+KK PG S +E
Sbjct: 532 GKGMKKVPGCSSIE 545
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/434 (32%), Positives = 233/434 (53%), Gaps = 17/434 (3%)
Query: 1 MLSFSALS-YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
+L F LS + Y+ V + + P WNT++RGY+ S +P ++ L+V M+ G+
Sbjct: 3 LLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGL 62
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T+PFL K+ + E +H + K GYE DL++ SLI MY G + A +
Sbjct: 63 LPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHK 122
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD + VS+ +++ GYA G + A+++F+ +P ++VVSW+A+I GY + G YKEA
Sbjct: 123 VFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEA 182
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F+EM + +E T+V+VL ACA +++ GR + ++ D G L + +LID+
Sbjct: 183 LELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDL 242
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y+KCG ++ A +F G+ DV+ WN +IGG KE+L LF EM G +P+++
Sbjct: 243 YSKCGQVETACGLFEGLS--CKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDV 300
Query: 300 TFLGLLSACAH-GGLVMEAW---YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
T + +L ACAH G + + W Y K L P ++D ++ G + A++
Sbjct: 301 TIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLR--TSLIDMYAKCGDIEAAHQV 358
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGK----LDLAEIVGKKLVELQPDHDGRYVGLSNVYAI 411
M L + S +++ G HG+ DL + K +E PD D +VGL + +
Sbjct: 359 FNSM-LHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIE--PD-DITFVGLLSACSH 414
Query: 412 FKRWDEARTTREAM 425
+ D R ++M
Sbjct: 415 SGKLDLGRHIFKSM 428
>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
Length = 565
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 152/380 (40%), Positives = 233/380 (61%), Gaps = 7/380 (1%)
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
+PD +++ L A RLA A ++ A + S N+++ +Y + GD+ AR
Sbjct: 145 APDAVSFNSLLCAHARLASVPDAESLFAAMPSRTQVS----WNAMVVVYVNAGDVSSARR 200
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD MPT+ S SW+ ++ GY KCG M AR+VF+ MP +N+V+W+A+I+GY + G KE+
Sbjct: 201 VFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKES 260
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F EM G + + T+V V+ A + +G+ + + Y+ K + + T+L+DM
Sbjct: 261 LALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDM 320
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
+AKCG + EAL F E Q D + A+I GLA HG K +L++F MQ + PD I
Sbjct: 321 HAKCGNVDEALSAFR--EIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPI 378
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
TF+G+L+AC+H GLV + +++++ K GM +++HYAC+VD L RAG++ EA+E +
Sbjct: 379 TFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEMVQT 438
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP+ P LG+LL+ C HG +++AEIV KL EL+P + G Y+ LSN+YA ++W+EA
Sbjct: 439 MPMGPHPGALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQWEEA 498
Query: 419 RTTREAMETRGVKKYPGWSF 438
R M TR K PG S
Sbjct: 499 ERIRSVMRTRVPFKQPGSSM 518
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 108/244 (44%), Gaps = 38/244 (15%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + +V + + W +I GY++S P +S++LF +M AG+ PD T +
Sbjct: 224 GSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVI 283
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A+ ++ ELA V + + K E + + +L+ M+ CG++ A F + +
Sbjct: 284 SAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAY 343
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+ +++ G A G +A QVFE M ++V W
Sbjct: 344 PYTALISGLAAHGHAKLALQVFERMQAQSV--WP-------------------------- 375
Query: 191 SKANEVTLVSVLCACAHLGALDQG----RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ +T V VL AC+H G +D+G M++Y G+ ++DM + G +
Sbjct: 376 ---DPITFVGVLTACSHAGLVDKGLDYWEAMVKYY---GMERRADHYACVVDMLGRAGRL 429
Query: 247 KEAL 250
+EA
Sbjct: 430 EEAF 433
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 160/421 (38%), Positives = 240/421 (57%), Gaps = 10/421 (2%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
I WN++I Y ++ K++ +FV M+ GV PD +T + A + + +HA
Sbjct: 217 IVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHA 276
Query: 88 QIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
++ K Y +DL + N+L+ MY C + AR VFD MP + VS SM+ GYA+ +
Sbjct: 277 RVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVK 336
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
AR +F M E+NVVSW+ALI GY + G+ +EA+ +F ++ T ++L ACA
Sbjct: 337 AARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACA 396
Query: 207 HLGALDQGRMMLRYMIDKGLSLT------LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
+L L GR ++ G + + SLIDMY KCG +++ +VF + +
Sbjct: 397 NLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMV--E 454
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
DV+ WNAMI G A +G+ +LE+F +M + G PD +T +G+LSAC+H GLV E +
Sbjct: 455 RDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRY 514
Query: 321 FKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
F S+ G+ P +H+ CMVD L RAG + EA + I MP++P + GSLL C HG
Sbjct: 515 FHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHG 574
Query: 380 KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
++L + V +KL+E+ P + G YV LSN+YA RW + R+ M RGV K PG S++
Sbjct: 575 NIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWI 634
Query: 440 E 440
E
Sbjct: 635 E 635
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 149/286 (52%), Gaps = 3/286 (1%)
Query: 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
A +HA+I KT + S++FI N L+ YG CG AR+VFD MP + + S+N++L K
Sbjct: 38 ARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTK 97
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
G+++ A VF+ MPE + SW+A++ G+ + ++EAL F +M NE + S
Sbjct: 98 FGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSA 157
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
L ACA L L+ G + + L + + ++L+DMY+KCG + A F G+
Sbjct: 158 LSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVR-- 215
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
+++ WN++I +G ++LE+F M G+ PDEIT ++SACA + E
Sbjct: 216 NIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIH 275
Query: 322 KSLGKRGMVPKSEHYA-CMVDALSRAGQVTEAYEFICQMPLEPTAS 366
+ KR +VD ++ +V EA +MPL S
Sbjct: 276 ARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVS 321
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 147/337 (43%), Gaps = 61/337 (18%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L+ G +D + V + P WN ++ G+++ +++ FV M +
Sbjct: 92 LSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNE 151
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
++ A L + + +HA I+K+ Y D+++ ++L+ MY CG + A+ FDG
Sbjct: 152 YSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDG 211
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + VSWNS++ C E N G +AL +F
Sbjct: 212 MAVRNIVSWNSLI----TCYEQN---------------------------GPAGKALEVF 240
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQG-RMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
M D G + +E+TL SV+ ACA A+ +G ++ R + L L +L+DMYAK
Sbjct: 241 VMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAK 300
Query: 243 CGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAMIGGL 273
C + EA +VF + + +V+ WNA+I G
Sbjct: 301 CRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGY 360
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+G +E++ LF ++ I P TF LL+ACA+
Sbjct: 361 TQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACAN 397
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 39/269 (14%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
+ S++ + WN +I GY+++ +++ LF+ + R + P H T+ L A LA
Sbjct: 341 MFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLAD 400
Query: 79 RELAVAVHAQIAKTGY------ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+L H QI K G+ ESD+F+ NSLI MY CG + VF+ M + VSW
Sbjct: 401 LKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSW 460
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
N+M+ GYA+ +GY AL IF +M G K
Sbjct: 461 NAMIVGYAQ--------------------------NGY-----GTNALEIFRKMLVSGQK 489
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ VT++ VL AC+H G +++GR M + GL+ T ++D+ + G + EA
Sbjct: 490 PDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEAND 549
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+ + Q D ++W +++ +HG ++
Sbjct: 550 LIQTM-PMQPDNVVWGSLLAACKVHGNIE 577
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 104/286 (36%), Gaps = 68/286 (23%)
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS--------- 261
+D R+ R +I S + +Q L+D Y KCG ++A VF + + +
Sbjct: 36 IDARRIHAR-IIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSV 94
Query: 262 --------------------DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
D WNAM+ G A H +E+L F +M +E +F
Sbjct: 95 LTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSF 154
Query: 302 LGLLSACA-----------HG------------------------GLVMEAWYFFKSLGK 326
LSACA H G+V A F +
Sbjct: 155 GSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAV 214
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
R +V + C + AG+ E + + +EP L S+++ C + +
Sbjct: 215 RNIVSWNSLITC-YEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQ 273
Query: 387 VGKKLVELQPDHDGRYVG--LSNVYAIFKRWDEARTTREAMETRGV 430
+ ++V+ + +G L ++YA +R +EAR + M R V
Sbjct: 274 IHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNV 319
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 83/185 (44%), Gaps = 5/185 (2%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT-YPFL 69
G ++ C V + + WN +I GY+++ ++ +F KML +G PDH+T L
Sbjct: 440 GMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVL 499
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM- 128
+ S E H+ + G ++ + G G + A ++ MP +
Sbjct: 500 SACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPD 559
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVS---WSALIDGYVKCGDYKEALVIFEE 185
+V W S+L G + + + V E + E + ++ + L + Y + G +K+ + + ++
Sbjct: 560 NVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQ 619
Query: 186 MRDVG 190
MR G
Sbjct: 620 MRQRG 624
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 160/411 (38%), Positives = 238/411 (57%), Gaps = 11/411 (2%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WNT+I GY+++ ++ LF + SP + + A SG + L A ++
Sbjct: 238 WNTMISGYAQNGELLEAQRLFEE------SPVRDVFTWTAMVSGYVQNGMLDEA--RRVF 289
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
E + N++I Y C + ARE+F+ MP + SWN+M+ GYA+ G++ AR
Sbjct: 290 DGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARN 349
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
F+ MP+R+ +SW+A+I GY + G +EAL +F EM+ G + N T S L CA + A
Sbjct: 350 FFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAA 409
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L+ G+ + ++ GL + +L+ MY KCG I +A IVF G+E + +V+ WN MI
Sbjct: 410 LELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE--EKEVVSWNTMI 467
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GM 329
G A HGF KE+L LF M+ GI PD++T +G+LSAC+H GLV + +F S+ + G+
Sbjct: 468 AGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGI 527
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
S+HY CM+D L RAG++ +A + MP EP A+ G+LL HG +L E K
Sbjct: 528 TANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAK 587
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ E++PD+ G YV LSN+YA RW + R M RGVKK PG+S+VE
Sbjct: 588 MIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVE 638
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 143/283 (50%), Gaps = 20/283 (7%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYPFLAKASGRLAKRELAVAVH 86
+ WN ++ GY+++ ++ +F +M + +S + + ++ A+R
Sbjct: 142 VVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARR------- 194
Query: 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
+ ++ + +L N ++ Y +V AR +FD MP + VSWN+M+ GYA+ GE+
Sbjct: 195 --LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELL 252
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
A+++FE P R+V +W+A++ GYV+ G EA +F+ M + N V+ +++
Sbjct: 253 EAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM----PEKNSVSWNAIIAGYV 308
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
+DQ R + M + +S ++I YA+ G I +A F + Q D + W
Sbjct: 309 QCKRMDQARELFEAMPCQNVS----SWNTMITGYAQNGDIAQARNFFDRMP--QRDSISW 362
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
A+I G A G+ +E+L LF EM+ G + TF LS CA
Sbjct: 363 AAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCA 405
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 101/425 (23%), Positives = 191/425 (44%), Gaps = 32/425 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G D + ++ + + WN +I G + + LF KM + D +++ +
Sbjct: 63 GQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKM----PTRDLVSWNVMI 118
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
R A + Q+ E D+ N+++ Y G + A+E+FD MP K S+
Sbjct: 119 SGCVRYRNLRAARLLFDQMP----ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSI 174
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN ML Y + G + AR++FE + ++SW+ ++ GYVK +A IF+ M
Sbjct: 175 SWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRM---- 230
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ +EV+ +++ A G L + + + ++ + T+++ Y + G + EA
Sbjct: 231 PERDEVSWNTMISGYAQNGEL----LEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEAR 286
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF G+ + S + WNA+I G + ++ ELF M ++ ++ +++ A
Sbjct: 287 RVFDGMPEKNS--VSWNAIIAGYVQCKRMDQARELFEAMPCQNVS----SWNTMITGYAQ 340
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP---TASM 367
G + +A FF + +R + +A ++ +++G EA +M + S
Sbjct: 341 NGDIAQARNFFDRMPQRDSIS----WAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRST 396
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVG--LSNVYAIFKRWDEARTTREAM 425
S L+ C L+L + V ++V+ + G YVG L +Y D+A E +
Sbjct: 397 FTSTLSTCAEIAALELGKQVHGRVVKAGLE-SGCYVGNALLVMYCKCGNIDDAYIVFEGI 455
Query: 426 ETRGV 430
E + V
Sbjct: 456 EEKEV 460
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 145/304 (47%), Gaps = 27/304 (8%)
Query: 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
++D+ N I + G A +F+ MP + S+SWN+M+ G + +ARQ+FE
Sbjct: 46 DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGSKANEVTLVSVLCACAHLGALD 212
MP R++VSW+ +I G V+ + + A ++F++M RDV V+ ++L A G +
Sbjct: 106 MPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDV------VSWNAMLSGYAQNGYVK 159
Query: 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
+ + + M K S++ ++ Y + G I++A +F K +++ WN M+GG
Sbjct: 160 EAKEIFDEMPCKN-SISW---NGMLAAYVQNGRIEDARRLFES--KADWELISWNCMMGG 213
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPK 332
+ ++ +F M DE+++ ++S A G ++EA F+ R +
Sbjct: 214 YVKRNRLVDARGIFDRMP----ERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFT- 268
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV 392
+ MV + G + EA MP E + +++ G + ++D A ++L
Sbjct: 269 ---WTAMVSGYVQNGMLDEARRVFDGMP-EKNSVSWNAIIAGYVQCKRMDQA----RELF 320
Query: 393 ELQP 396
E P
Sbjct: 321 EAMP 324
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 42/222 (18%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GNID + V + + WNT+I GY++ +++ LF M + G+ PD +T +
Sbjct: 443 GNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGV- 501
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
L+ H + G E F S+ YG T S
Sbjct: 502 ----------LSACSHTGLVDKGTE--YFY--SMTQDYG---------------ITANSK 532
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMP-ERNVVSWSAL-----IDGYVKCGDYKEALVIFE 184
+ M+D + G ++ A+ + + MP E + +W AL I G + G+ K A +IFE
Sbjct: 533 HYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGE-KAAKMIFE 591
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL 226
D + V L ++ A G D GRM LR M D+G+
Sbjct: 592 MEPD--NSGMYVLLSNLYAASGRWG--DVGRMRLR-MRDRGV 628
>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
Length = 1287
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/438 (34%), Positives = 254/438 (57%), Gaps = 4/438 (0%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L+ +G + + +L+ + W ++I YS++ +++ F ML G++PD
Sbjct: 119 ISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDD 178
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T + A +L EL ++H + + G + +LI MY CGD +AREVFD
Sbjct: 179 VTVIGVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDA 238
Query: 124 MPT-KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ + SWN+++DGY K G +++AR +F+ M R++++++++I GY+ G +EAL++
Sbjct: 239 VGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLL 298
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F MR + + T+VS+L ACA LGAL QGR + + + + + + T+L+DMY K
Sbjct: 299 FMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMK 358
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG + EA IVF + K DV W AMI GLA +G K LE F +M+ G P+ ++++
Sbjct: 359 CGRVNEATIVFQRMGKR--DVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYI 416
Query: 303 GLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+L+AC+H L+ E +F + + P+ EHY CM+D L R+G + EA + + MP+
Sbjct: 417 AVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPM 476
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
+P + + S+L+ C H ++DLA+ + L++++PD D YV L N+ ++W++A
Sbjct: 477 QPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKI 536
Query: 422 REAMETRGVKKYPGWSFV 439
R ME R VKK G+S V
Sbjct: 537 RMLMEERQVKKTAGYSSV 554
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 191/375 (50%), Gaps = 20/375 (5%)
Query: 29 FYWNTVIRGY----SKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKREL-AV 83
F ++T +R + S +P+ LF +M RA V PD T+ FL K S R L
Sbjct: 6 FLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRALLCT 65
Query: 84 AVHAQIAKTGYESDL-FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+HA +T S F++NSLIHMY G R FD +P K +VSW ++ G AK
Sbjct: 66 MLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKM 125
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
G ++ AR + P R+V+SW++LI Y + KEA+ F+ M G ++VT++ VL
Sbjct: 126 GMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVL 185
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV---EKH 259
AC+ L L+ G + + +KG+S++ L +LIDMYAKCG A VF V +
Sbjct: 186 SACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRP 245
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
QS WNA+I G HG V + LF +M++ I ITF +++ H G + EA
Sbjct: 246 QS----WNAIIDGYCKHGHVDVARSLFDQMEVRDI----ITFNSMITGYIHSGQLREALL 297
Query: 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTE--AYEFICQMPLEPTASMLGS-LLTGCM 376
F ++ + + + ++ A + G + + A ++ L T +G+ LL M
Sbjct: 298 LFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYM 357
Query: 377 NHGKLDLAEIVGKKL 391
G+++ A IV +++
Sbjct: 358 KCGRVNEATIVFQRM 372
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 106/437 (24%), Positives = 192/437 (43%), Gaps = 38/437 (8%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S +G+ + K L+ + + + WN+++ Y+ + +++ +ML G P ++
Sbjct: 880 SAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFV 939
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYE-SDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
L SG+ +L V +H + K G+ S + + +LI MYG C
Sbjct: 940 SLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCC-------------- 985
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
C + ++A +F +P + ++LI + C + AL I M
Sbjct: 986 ---------------CFDHSLA--IFNEIPSIALECCNSLITSSLGCNMFDAALEILHCM 1028
Query: 187 RDVGSKANEVTLVSVLCACAHLGA--LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
G ++VT + + A + + L +M+ ++ G + + + +SLI YA G
Sbjct: 1029 IVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAG 1088
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+ + ++F G+ +V+ + A+I A +G ++ELF +M G+ PD +TFL
Sbjct: 1089 QLSSSHLIFEGLL--DPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCA 1146
Query: 305 LSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
++ C G+ E + + R + P H+ACMV+ LSR G V EA E + Q PL
Sbjct: 1147 IAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRH 1206
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
SLL C HG+ L + L+++ + +SN + + A +E
Sbjct: 1207 YTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSNFFNDIGDRETALRIKE 1266
Query: 424 AMETRGVKKYPGWSFVE 440
+ VKK G S +E
Sbjct: 1267 MTNVKEVKK-SGHSLIE 1282
>gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 251/445 (56%), Gaps = 38/445 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLS-NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
+L +ALS N+ Y C +L H + WN +IRGYS S +P ++ISLF +M R GV
Sbjct: 68 LLRVAALSPSRNLSYGCSLLFHCHFHSATMPWNFIIRGYSSSDSPQEAISLFGEMRRRGV 127
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P++LT+PFL KA LA + HA K G + D+++ N+LI+ YGSC + AR+
Sbjct: 128 RPNNLTFPFLLKACATLATLQEGKQFHAIAIKCGLDLDVYVRNTLIYFYGSCKRMSGARK 187
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD M + VSWN+++ +A ++ + + EA
Sbjct: 188 VFDEMTERTLVSWNAVI---------------------------TACVENFC----FDEA 216
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
+ F +M + G + +E T+V +L ACA LG L GR + ++ +G+ L + L T+ +DM
Sbjct: 217 IDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVLNVQLGTAFVDM 276
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
YAK G + A VF+ ++ Q V W+AMI GLA HGF E++ELFT M I P+ +
Sbjct: 277 YAKSGDVGCARHVFNCLK--QKSVWTWSAMILGLAQHGFANEAIELFTNMMSSPIVPNHV 334
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
TF+G+L AC+H GLV +++++F + + G+ P HY MVD L RAGQV EAYE I
Sbjct: 335 TFIGVLCACSHAGLVDKSYHYFNLMERVYGIKPMMIHYGSMVDVLGRAGQVKEAYELIMS 394
Query: 359 MPLEPTASMLGSLLTGCMN---HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
MP+EP + +LL+ C +G ++AE K+L+EL+P G V ++N +A W
Sbjct: 395 MPVEPDPIVWRTLLSACSGRDVNGGAEVAEEARKRLLELEPKRGGNVVMVANKFAELGMW 454
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
+A R M+ RG+KK G S +E
Sbjct: 455 KQAADYRRTMKDRGIKKMAGESCIE 479
>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
Length = 587
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 142/299 (47%), Positives = 197/299 (65%), Gaps = 3/299 (1%)
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
G+ + A +F MP R+VVSW++++ Y +CG EAL +F++MR VG K E T+VS+L
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
ACAHLGALD+G + Y+ D + + + T+L+DMYAKCG I A VF+ +E D
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAME--SKD 279
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
VL WN +I G+A+HG VKE+ LF EM+ G+ P++ITF+ +LSAC+H G+V E
Sbjct: 280 VLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLD 339
Query: 323 SLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
+ G+ PK EHY C++D L+RAG + EA E I MP+EP LG+LL GC HG
Sbjct: 340 CMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNF 399
Query: 382 DLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+L E+VGK+L+ LQP H GRY+ LSN+YA K+WD+AR R M+ G+ K PG S +E
Sbjct: 400 ELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIE 458
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 129/269 (47%), Gaps = 33/269 (12%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
G D + + S + + WN+++ Y++ PN++++LF +M GV P T L
Sbjct: 161 FGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSL 220
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L + + +H I E + + +L+ MY
Sbjct: 221 LSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMY--------------------- 259
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
AKCG++++A QVF M ++V++W+ +I G G KEA +F+EM++
Sbjct: 260 ----------AKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEA 309
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKE 248
G + N++T V++L AC+H G +D+G+ +L M G+ + +ID+ A+ G ++E
Sbjct: 310 GVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEE 369
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
A+ + G + + A++GG +HG
Sbjct: 370 AMELI-GTMPMEPNPCALGALLGGCRIHG 397
>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 251/445 (56%), Gaps = 38/445 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLS-NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
+L +ALS N+ Y C +L H + WN +IRGYS S +P ++ISLF +M R GV
Sbjct: 68 LLRVAALSPSRNLSYGCSLLFHCHFHSATMPWNFIIRGYSSSDSPQEAISLFGEMRRRGV 127
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P++LT+PFL KA LA + HA K G + D+++ N+LI+ YGSC + AR+
Sbjct: 128 RPNNLTFPFLLKACATLATLQEGKQFHAIAIKCGLDLDVYVRNTLINFYGSCKRMSGARK 187
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD M + VSWN+++ +A ++ + + EA
Sbjct: 188 VFDEMTERTLVSWNAVI---------------------------TACVENFC----FDEA 216
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
+ F +M + G + +E T+V +L ACA LG L GR + ++ +G+ L + L T+ +DM
Sbjct: 217 IDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVLNVQLGTAFVDM 276
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
YAK G + A VF+ ++ Q V W+AMI GLA HGF E++ELFT M I P+ +
Sbjct: 277 YAKSGDVGCARHVFNCLK--QKSVWTWSAMILGLAQHGFANEAIELFTNMTSSPIVPNHV 334
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
TF+G+L AC+H GLV +++++F + + G+ P HY MVD L RAGQV EAYE I
Sbjct: 335 TFIGVLCACSHAGLVDKSYHYFNLMERVYGIKPMMIHYGSMVDVLGRAGQVKEAYELIMS 394
Query: 359 MPLEPTASMLGSLLTGCMN---HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
MP+EP + +LL+ C +G ++AE K+L+EL+P G V ++N +A W
Sbjct: 395 MPVEPDPIVWRTLLSACSGRDVNGGAEVAEEARKRLLELEPKRGGNVVMVANKFAELGMW 454
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
+A R M+ RG+KK G S +E
Sbjct: 455 KQAADYRRTMKDRGIKKMAGESCIE 479
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 163/434 (37%), Positives = 244/434 (56%), Gaps = 38/434 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + K+ + + WN I GY+++ N +++ LF KM++ V PD T +
Sbjct: 183 GXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVL 242
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + EL VH+ I G+ +L I N+LI
Sbjct: 243 SACAQSGSIELGRQVHSWINDHGFGXNLKIVNALI------------------------- 277
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
D Y+KCGE+ A +F+ + ++V+SW+ LI GY YKEAL++F++M G
Sbjct: 278 ------DLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSG 331
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKCGAIK 247
K N+VT++S+L ACAHLGA+D GR + Y IDK G++ L+TSLIDMYAKCG I+
Sbjct: 332 EKPNDVTMLSILSACAHLGAIDIGRWIHVY-IDKRLKGVTNASSLRTSLIDMYAKCGDIE 390
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VF + + WNAMI G AMHG + ++F+ M+ GI PD+ITF+GLLSA
Sbjct: 391 AAQQVFDSMLNRS--LSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSA 448
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H G++ + F+S+ + ++PK EHY CM+D +G EA + I M +EP
Sbjct: 449 CSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGV 508
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ SLL C HG ++L E + L++++P++ G YV LSN+YA +RW+E TR +
Sbjct: 509 IWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLN 568
Query: 427 TRGVKKYPGWSFVE 440
+G+KK PG S +E
Sbjct: 569 DKGMKKVPGCSSIE 582
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/430 (31%), Positives = 233/430 (54%), Gaps = 9/430 (2%)
Query: 9 YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPF 68
+ + Y+ V + P + WNT+ RG++ S +P ++ L+V M+ G+ P+ T+PF
Sbjct: 49 HFDGLPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPF 108
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
L K+ + + +H Q+ K G++ DL+I SLI MY G + A++V D +
Sbjct: 109 LLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRD 168
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
VS+ +++ GYA G + A ++F+ +P ++VVSW+A I GY + G+YKEAL +F++M
Sbjct: 169 VVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMK 228
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
+ +E T+V+VL ACA G+++ GR + ++ D G L + +LID+Y+KCG ++
Sbjct: 229 TNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELET 288
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A +F G+ DV+ WN +IGG KE+L LF +M G P+++T L +LSAC
Sbjct: 289 ACGLFQGLS--NKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSAC 346
Query: 309 AHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
AH G + + + KR G+ S ++D ++ G + A + M L + S
Sbjct: 347 AHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLS 405
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
+++ G HG+ + A + ++ + ++PD D +VGL + + D R +
Sbjct: 406 SWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPD-DITFVGLLSACSHSGMLDLGRHIFRS 464
Query: 425 METRGVKKYP 434
M TR K P
Sbjct: 465 M-TRDYKLMP 473
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 127/276 (46%), Gaps = 35/276 (12%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G ++ +C + LSN + WNT+I GY+ +++ LF MLR+G P+ +T
Sbjct: 281 SKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTML 340
Query: 68 FLAKASGRLAKRELAVAVHAQIAK--TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ A L ++ +H I K G + + SLI MY CGDI A++VFD M
Sbjct: 341 SILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSML 400
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ SWN+M+ G+A G N A IF
Sbjct: 401 NRSLSSWNAMIFGFAMHGRAN-------------------------------AAFDIFSR 429
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCG 244
MR G + +++T V +L AC+H G LD GR + R M D L L +ID+ G
Sbjct: 430 MRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSG 489
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
KEA + + +E + D +IW +++ MHG V+
Sbjct: 490 LFKEAEKMINTMEM-EPDGVIWCSLLKACKMHGNVE 524
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 171/500 (34%), Positives = 257/500 (51%), Gaps = 75/500 (15%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPFLAK 71
+ Y+ V +H + WN+++R + S P +++ + +ML R+ PD T+P L K
Sbjct: 28 VGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
L + ++ +H Q+ K SDL+I +L++MY +CGD+ AR +F+ M + V
Sbjct: 88 GCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVV 147
Query: 132 WNSMLDGYAK--------------------------------CGE-------MNMARQVF 152
W SM+ GY K C E M + +
Sbjct: 148 WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIR 207
Query: 153 ELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV----------------------- 189
E+ + V SAL++ Y KCGD K A +F+++ D
Sbjct: 208 EMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQ 267
Query: 190 -------GS--KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
GS + NEVT+++V+ ACA LG L+ GR + Y+ ++ L SLIDM+
Sbjct: 268 LFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMF 327
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
+KCG I A +F + D++ WN+M+ GLA+HG +E+L F MQ + PDEIT
Sbjct: 328 SKCGDIDAAKRIFDSMS--YKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEIT 385
Query: 301 FLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+G+L+AC+H GLV E F + G+ KSEHY CMVD L RAG + EA EFI M
Sbjct: 386 FIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVM 445
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
PL+P ++ GS+L C + L+L E + L+EL+P +DG Y+ LSN+YA K W+E +
Sbjct: 446 PLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVK 505
Query: 420 TTREAMETRGVKKYPGWSFV 439
RE M +G++K PG S V
Sbjct: 506 KVRELMNEKGIQKTPGCSSV 525
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 124/265 (46%), Gaps = 36/265 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPFL 69
G++ + +V LS+ ++ W+ +I GY K+ +++ LF ++ + + P+ +T +
Sbjct: 229 GDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAV 288
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A +L E VH I +T + ++NSLI M+ CGDI A+ +FD M K
Sbjct: 289 ISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDL 348
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+SWNSM++G A G + R EAL F M+
Sbjct: 349 ISWNSMVNGLALHG---LGR----------------------------EALAQFHLMQTT 377
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK--GLSLTLPLQTSLIDMYAKCGAIK 247
+ +E+T + VL AC+H G + +G+ + Y I+ G+ L ++D+ + G +
Sbjct: 378 DLQPDEITFIGVLTACSHAGLVQEGKKLF-YEIEALYGVRLKSEHYGCMVDLLCRAGLLA 436
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGG 272
EA F V Q D IW +M+G
Sbjct: 437 EAR-EFIRVMPLQPDGAIWGSMLGA 460
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 173/510 (33%), Positives = 255/510 (50%), Gaps = 100/510 (19%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
+ WN VI+ +S +P +++ LF ML GVS D + + KA RL + + +H
Sbjct: 91 YLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQIHGF 150
Query: 89 IAKTGYESDLFISNSLIHMY-------------------------------GSCGDIVYA 117
+ KTG SDLF+ N LI +Y CG A
Sbjct: 151 LKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESA 210
Query: 118 REVFDGMPTKMS----------------------------------VSWNSMLDGYAKCG 143
RE+FD MP +M +SWNSM+DGY K G
Sbjct: 211 RELFDLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLISWNSMIDGYVKHG 270
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGS---------- 191
+ A+ +F++MP R+VV+WS +IDGY K G +A +F++M RDV S
Sbjct: 271 RIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQ 330
Query: 192 --------------------KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
+E TLV VL A A LG L + M Y+++K L
Sbjct: 331 NRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGK 390
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
L +LIDMY+KCG+I+ A++VF G+E D WNAMIGGLA+HG + + ++ +++
Sbjct: 391 LGVALIDMYSKCGSIQHAMLVFKGIENKSIDH--WNAMIGGLAIHGLGESAFDMLLQIER 448
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVT 350
I PD+ITF+GLL+AC+H GLV E F+ + ++ + P+ +HY CMVD LSR+G +
Sbjct: 449 RSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIE 508
Query: 351 EAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410
A I +MP+EP + + L C +H + + E+V K L+ + YV LSN+YA
Sbjct: 509 LAKNLIEEMPIEPNDVIWRTFLAACNHHKEFETGELVAKHLIWEAGYNPSSYVLLSNLYA 568
Query: 411 IFKRWDEARTTREAMETRGVKKYPGWSFVE 440
F +W + R R M+ R ++K PG S++E
Sbjct: 569 SFGKWKDVRRIRTIMKERKIEKVPGCSWIE 598
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
D +WNA+I + + +L LF M G++ D+ + +L AC+ GLV E
Sbjct: 89 DXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQIH 148
Query: 322 KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
L K G+ C++ + G + A + +MP + S S++ G + G
Sbjct: 149 GFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVS-YNSMIDGYVKCGST 207
Query: 382 DLAEIVGKKLVELQPD 397
+ A ++L +L P+
Sbjct: 208 ESA----RELFDLMPE 219
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 160/441 (36%), Positives = 244/441 (55%), Gaps = 10/441 (2%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S GN++ + +V + + + WN++I Y ++ +++ +F ML + V PD +T
Sbjct: 198 SKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLA 257
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A L+ ++ VHA++ K +D+ +SN+ + MY C I AR +FD MP
Sbjct: 258 SVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ ++ SM+ GYA AR +F M ERNVVSW+ALI GY + G+ +EAL +F +
Sbjct: 318 RNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLL 377
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT------LPLQTSLIDMY 240
+ T ++L ACA L L G +++ G + + SLIDMY
Sbjct: 378 KRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMY 437
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
KCG ++E +VF + + D + WNAMI G A +G+ E+LELF EM G PD IT
Sbjct: 438 VKCGCVEEGYLVFRKM--MERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHIT 495
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
+G+LSAC H G V E ++F S+ + G+ P +HY CMVD L RAG + EA I +M
Sbjct: 496 MIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEM 555
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P++P + + GSLL C H + L + V +KL E++ + G YV LSN+YA +W +A
Sbjct: 556 PVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAM 615
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R+ M GV K PG S+++
Sbjct: 616 NVRKLMRKEGVTKQPGCSWIK 636
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 131/226 (57%), Gaps = 4/226 (1%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VHA + K+G+ +++FI N LI Y CG + R++FD MP + +WNS++ G K G
Sbjct: 42 VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
++ A +F MPER+ +W++++ G+ + +EAL F M G NE T S L A
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLT-LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
C+ L +++G + + +I K L+ + + ++L+DMY+KCG + +A VF E +V
Sbjct: 162 CSGLNDMNRG-VQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFD--EMGDRNV 218
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ WN++I +G E+L++F M + PDE+T ++SACA
Sbjct: 219 VSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACA 264
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 150/335 (44%), Gaps = 61/335 (18%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+ L+ LG +D + + + WN+++ G+++ +++ F M + G +
Sbjct: 94 TGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEY 153
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T+ A L V +H+ IAK+ SD++I ++L+ MY CG++ A++VFD M
Sbjct: 154 TFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEM 213
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ VSWNS++ Y + G A +VF++M E SW
Sbjct: 214 GDRNVVSWNSLITCYEQNGPAVEALKVFQVMLE----SW--------------------- 248
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGR-MMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
+ +EVTL SV+ ACA L A+ G+ + R + L + L + +DMYAKC
Sbjct: 249 ------VEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKC 302
Query: 244 GAIKEALIVFHGV-----------------------------EKHQSDVLIWNAMIGGLA 274
IKEA +F + + + +V+ WNA+I G
Sbjct: 303 SRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYT 362
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+G +E+L LF ++ + P TF +L ACA
Sbjct: 363 QNGENEEALSLFCLLKRESVCPTHYTFANILKACA 397
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
C L A+D R + +I G S + +Q LID YAKCG++++ +F + Q +
Sbjct: 29 CIKLKLSAIDV-RCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMP--QRN 85
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
V WN+++ GL GF+ E+ LF M D+ T+ ++S A EA Y+F
Sbjct: 86 VFTWNSVVTGLTKLGFLDEADSLFRSMP----ERDQCTWNSMVSGFAQHDRCEEALYYFA 141
Query: 323 SLGKRGMVPKSEHYACMVDALS 344
+ K G V +A + A S
Sbjct: 142 MMHKEGFVLNEYTFASGLSACS 163
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 160/411 (38%), Positives = 238/411 (57%), Gaps = 11/411 (2%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WNT+I GY+++ ++ LF + SP + + A SG + L A ++
Sbjct: 157 WNTMISGYAQNGELLEAQRLFEE------SPVRDVFTWTAMVSGYVQNGMLDEA--RRVF 208
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
E + N++I Y C + ARE+F+ MP + SWN+M+ GYA+ G++ AR
Sbjct: 209 DGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARN 268
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
F+ MP+R+ +SW+A+I GY + G +EAL +F EM+ G + N T S L CA + A
Sbjct: 269 FFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAA 328
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L+ G+ + ++ GL + +L+ MY KCG I +A IVF G+E + +V+ WN MI
Sbjct: 329 LELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE--EKEVVSWNTMI 386
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GM 329
G A HGF KE+L LF M+ GI PD++T +G+LSAC+H GLV + +F S+ + G+
Sbjct: 387 AGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGI 446
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
S+HY CM+D L RAG++ +A + MP EP A+ G+LL HG +L E K
Sbjct: 447 TANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAK 506
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ E++PD+ G YV LSN+YA RW + R M RGVKK PG+S+VE
Sbjct: 507 MIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVE 557
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 143/283 (50%), Gaps = 20/283 (7%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYPFLAKASGRLAKRELAVAVH 86
+ WN ++ GY+++ ++ +F +M + +S + + ++ A+R
Sbjct: 61 VVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARR------- 113
Query: 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
+ ++ + +L N ++ Y +V AR +FD MP + VSWN+M+ GYA+ GE+
Sbjct: 114 --LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELL 171
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
A+++FE P R+V +W+A++ GYV+ G EA +F+ M + N V+ +++
Sbjct: 172 EAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM----PEKNSVSWNAIIAGYV 227
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
+DQ R + M + +S ++I YA+ G I +A F + Q D + W
Sbjct: 228 QCKRMDQARELFEAMPCQNVS----SWNTMITGYAQNGDIAQARNFFDRMP--QRDSISW 281
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
A+I G A G+ +E+L LF EM+ G + TF LS CA
Sbjct: 282 AAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCA 324
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 162/341 (47%), Gaps = 24/341 (7%)
Query: 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
E D+ N+++ Y G + A+E+FD MP K S+SWN ML Y + G + AR++FE
Sbjct: 58 ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFES 117
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQG 214
+ ++SW+ ++ GYVK +A IF+ M + +EV+ +++ A G L
Sbjct: 118 KADWELISWNCMMGGYVKRNRLVDARGIFDRM----PERDEVSWNTMISGYAQNGEL--- 170
Query: 215 RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLA 274
+ + + ++ + T+++ Y + G + EA VF G+ + S + WNA+I G
Sbjct: 171 -LEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS--VSWNAIIAGYV 227
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSE 334
+ ++ ELF M ++ ++ +++ A G + +A FF + +R +
Sbjct: 228 QCKRMDQARELFEAMPCQNVS----SWNTMITGYAQNGDIAQARNFFDRMPQRDSIS--- 280
Query: 335 HYACMVDALSRAGQVTEAYEFICQMPLEP---TASMLGSLLTGCMNHGKLDLAEIVGKKL 391
+A ++ +++G EA +M + S S L+ C L+L + V ++
Sbjct: 281 -WAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRV 339
Query: 392 VELQPDHDGRYVG--LSNVYAIFKRWDEARTTREAMETRGV 430
V+ + G YVG L +Y D+A E +E + V
Sbjct: 340 VKAGLE-SGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEV 379
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 155/332 (46%), Gaps = 43/332 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP------DHL 64
G +D + +V + WN +I GY + K +++ LF M VS +
Sbjct: 199 GMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYA 258
Query: 65 TYPFLAKASG---RLAKRELA--VAVHAQIAKTGYESD---LFIS----------NSLIH 106
+A+A R+ +R+ A+ A A++GY + LF+ ++
Sbjct: 259 QNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTS 318
Query: 107 MYGSCGDI--------VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
+C +I V+ R V G+ + V N++L Y KCG ++ A VFE + E+
Sbjct: 319 TLSTCAEIAALELGKQVHGRVVKAGLESGCYVG-NALLVMYCKCGNIDDAYIVFEGIEEK 377
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
VVSW+ +I GY + G KEAL++FE M+ G ++VT+V VL AC+H G +D+G
Sbjct: 378 EVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYF 437
Query: 219 RYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
M D G++ T +ID+ + G + +A + + + D W A++G +HG
Sbjct: 438 YSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNM-PFEPDAATWGALLGASRIHG 496
Query: 278 FV---KESLELFTEMQIVGITPDEITFLGLLS 306
+++ ++ EM+ PD LLS
Sbjct: 497 NTELGEKAAKMIFEME-----PDNSGMYVLLS 523
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 120/264 (45%), Gaps = 23/264 (8%)
Query: 136 LDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE 195
L G + + AR +F+ MPER+VVSW+A++ GY + G KEA IF+EM N
Sbjct: 37 LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM----PCKNS 92
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
++ +L A G ++ R + D L ++ Y K + +A +F
Sbjct: 93 ISWNGMLAAYVQNGRIEDARRLFESKAD----WELISWNCMMGGYVKRNRLVDARGIFDR 148
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
+ + D + WN MI G A +G + E+ LF E + D T+ ++S G++
Sbjct: 149 MP--ERDEVSWNTMISGYAQNGELLEAQRLFEESPV----RDVFTWTAMVSGYVQNGMLD 202
Query: 316 EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
EA F + ++ V + ++ + ++ +A E MP + +S +++TG
Sbjct: 203 EARRVFDGMPEKNSVS----WNAIIAGYVQCKRMDQARELFEAMPCQNVSS-WNTMITGY 257
Query: 376 MNHGKLDLAEIVGKKLVELQPDHD 399
+G D+A+ + + P D
Sbjct: 258 AQNG--DIAQ--ARNFFDRMPQRD 277
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 93/222 (41%), Gaps = 42/222 (18%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GNID + V + + WNT+I GY++ +++ LF M + G+ PD +T +
Sbjct: 362 GNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGV- 420
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
L+ H + G E S+ YG T S
Sbjct: 421 ----------LSACSHTGLVDKGTE----YFYSMTQDYGI---------------TANSK 451
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMP-ERNVVSWSAL-----IDGYVKCGDYKEALVIFE 184
+ M+D + G ++ A+ + + MP E + +W AL I G + G+ K A +IFE
Sbjct: 452 HYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGE-KAAKMIFE 510
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL 226
D + V L ++ A G D GRM LR M D+G+
Sbjct: 511 MEPD--NSGMYVLLSNLYAASGRWG--DVGRMRLR-MRDRGV 547
>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
Length = 669
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 156/411 (37%), Positives = 243/411 (59%), Gaps = 34/411 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WNT+I G+ ++ +++ +F +ML GV+PD +T + A +L + + VH+ I
Sbjct: 291 WNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIK 350
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
G D ++NSLI+MY AKCG+M A +
Sbjct: 351 DNGICCDNILTNSLINMY-------------------------------AKCGDMAAAER 379
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
VF+ M +++VVSW+ ++ GYVK + A +FEEM+ A+E+ LVS+L AC+ LGA
Sbjct: 380 VFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGA 439
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
LD+GR + Y+ + ++ L L+++L+DMYAKCG I A +F ++ Q+ L WNAMI
Sbjct: 440 LDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQT--LSWNAMI 497
Query: 271 GGLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
GGLA +G+ KE++ELF +M ++ PD IT +L ACAH G+V E +F + G+
Sbjct: 498 GGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGV 557
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
VP +EHY C+VD L RAG + EA+ FI +MP+EP + GSLL C H ++DL +++G+
Sbjct: 558 VPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQ 617
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+V + P+ G +V +SN++A +WD+ R M +RG++K PG S V+
Sbjct: 618 HIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSSVQ 668
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 173/344 (50%), Gaps = 36/344 (10%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
++ Y+ KV ++ P F WN +IRGYS + P ++++F +M R GVSPD+ T +
Sbjct: 67 DMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVS 126
Query: 72 ASGR---LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
AS L R A+HA + + G+ SD+F+ + L++ YG+ +
Sbjct: 127 ASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSV-------------- 172
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
A +VFE M ER+VVSW+++I +CG + + L + EM+
Sbjct: 173 -----------------KEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQA 215
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G N+VT++S+L AC A+D+GR + + G+ + ++ +LI MY KCG + +
Sbjct: 216 EGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSD 275
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
AL F + + WN +I G + KE+L +F EM + G+TPD IT + +LSAC
Sbjct: 276 ALEAFQAMPARYTKS--WNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSAC 333
Query: 309 AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352
A G + + + + G+ + +++ ++ G + A
Sbjct: 334 AQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAA 377
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 127/259 (49%), Gaps = 8/259 (3%)
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
+M AR+VF+ M + N W+ +I GY C ++AL +F EMR G + T+ +V+
Sbjct: 67 DMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVS 126
Query: 204 ACAHLGAL---DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
A A L G + + G + + + + L++ Y ++KEA VF E ++
Sbjct: 127 ASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFE--EMYE 184
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
DV+ W +MI A G + L++ +EMQ GI P+++T + LLSAC V E +
Sbjct: 185 RDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWV 244
Query: 321 FKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG-CMNHG 379
+ +GK G+ + ++ ++ G +++A E MP T S +L+ G NH
Sbjct: 245 YNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKS-WNTLIDGFVQNHE 303
Query: 380 KLDLAEIVGKKLVE-LQPD 397
+ I + L+ + PD
Sbjct: 304 HKEALRIFEEMLLHGVTPD 322
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 133/299 (44%), Gaps = 39/299 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + +V ++ + W ++ GY K + +LF +M A V + L
Sbjct: 372 GDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLL 431
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A +L + +H+ I + DL + ++L+ MY CG I A E+F M K ++
Sbjct: 432 SACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTL 491
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+M+ G A +GY KEA+ +F++M ++
Sbjct: 492 SWNAMIGGLAS--------------------------NGY-----GKEAVELFDQMLELQ 520
Query: 191 S-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
K + +TL +VL ACAH+G +D+G M G+ ++D+ + G + EA
Sbjct: 521 DPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGMLDEA 580
Query: 250 LIVFHGVEKH--QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
FH ++K + + +IW +++ +H + L IV + P+++ L+S
Sbjct: 581 ---FHFIKKMPIEPNPVIWGSLLAACRVHH--RMDLGKVIGQHIVNVAPNDVGVHVLVS 634
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 169/435 (38%), Positives = 239/435 (54%), Gaps = 40/435 (9%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN+D + K+ + + WN +I GY++ +++ LF +M++ V PD T +
Sbjct: 158 GNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVL 217
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
EL +H+ I G+ S+L + N+LI
Sbjct: 218 STCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALI------------------------- 252
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
D Y+KCGEM A +FE + ++V+SW+ LI GY +KEAL++F+EM +G
Sbjct: 253 ------DLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLG 306
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKCGAIK 247
N+VT++S+L ACAHLGA+D GR + Y IDK G+ LQTSLIDMYAKCG I+
Sbjct: 307 ETPNDVTMLSILPACAHLGAIDIGRWIHVY-IDKKLKGIITNTSLQTSLIDMYAKCGNIE 365
Query: 248 EALIVFHGV-EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
A VF + K S NAMI G AMHG + +L + M+ GI PD+ITF+GLLS
Sbjct: 366 AANQVFDTILNKSLSSC---NAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLS 422
Query: 307 ACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC+H GL FKS+ + PK EHY CM+D L R+G EA E I M +EP
Sbjct: 423 ACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDG 482
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
+ GSLL C H L+L E++ +KL++++P + G YV LSN+YA RWD+ R +
Sbjct: 483 VIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLL 542
Query: 426 ETRGVKKYPGWSFVE 440
+G+KK PG S +E
Sbjct: 543 NDKGLKKVPGCSSIE 557
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/412 (34%), Positives = 233/412 (56%), Gaps = 13/412 (3%)
Query: 1 MLSFSALS-YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
+L F L+ Y + Y+ V + P WNT+IRG++ S +P +++L+V M+ G+
Sbjct: 15 LLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGL 74
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
SP+ T+PFL K+ + + +HAQI K G DL + SLI MY G + A +
Sbjct: 75 SPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHK 134
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD + VS+ +M+ GYA G M+ A+++F+ +P ++VVSW+A+I GY + G YKEA
Sbjct: 135 VFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEA 194
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F EM + K +E T+ +VL C H G ++ GR + ++ + G L L +LID+
Sbjct: 195 LELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDL 254
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y+KCG ++ A +F G++ DV+ WN +IGG A KE+L +F EM +G TP+++
Sbjct: 255 YSKCGEMERAHGLFEGLQ--YKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDV 312
Query: 300 TFLGLLSACAH-GGLVMEAW---YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
T L +L ACAH G + + W Y K L +G++ + ++D ++ G + EA
Sbjct: 313 TMLSILPACAHLGAIDIGRWIHVYIDKKL--KGIITNTSLQTSLIDMYAKCGNI-EAANQ 369
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRYVGL 405
+ L + S +++ G HG+ D A + ++ + ++PD D +VGL
Sbjct: 370 VFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPD-DITFVGL 420
>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
Length = 669
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 156/411 (37%), Positives = 243/411 (59%), Gaps = 34/411 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WNT+I G+ ++ +++ +F +ML GV+PD +T + A +L + + VH+ I
Sbjct: 291 WNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIK 350
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
G D ++NSLI+MY AKCG+M A +
Sbjct: 351 DNGICCDNILTNSLINMY-------------------------------AKCGDMAAAER 379
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
VF+ M +++VVSW+ ++ GYVK + A +FEEM+ A+E+ LVS+L AC+ LGA
Sbjct: 380 VFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGA 439
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
LD+GR + Y+ + ++ L L+++L+DMYAKCG I A +F ++ Q+ L WNAMI
Sbjct: 440 LDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQT--LSWNAMI 497
Query: 271 GGLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
GGLA +G+ KE++ELF +M ++ PD IT +L ACAH G+V E +F + G+
Sbjct: 498 GGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGV 557
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
VP +EHY C+VD L RAG + EA+ FI +MP+EP + GSLL C H ++DL +++G+
Sbjct: 558 VPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQ 617
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+V + P+ G +V +SN++A +WD+ R M +RG++K PG S V+
Sbjct: 618 HIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSSVQ 668
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 173/344 (50%), Gaps = 36/344 (10%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
++ Y+ KV ++ P F WN +IRGYS + P ++++F +M R GVSPD+ T +
Sbjct: 67 DMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVS 126
Query: 72 ASGR---LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
AS L R A+HA + + G+ SD+F+ + L++ YG+ +
Sbjct: 127 ASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSV-------------- 172
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
A +VFE M ER+VVSW+++I +CG + + L + EM+
Sbjct: 173 -----------------EEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQA 215
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G N+VT++S+L AC A+D+GR + + G+ + ++ +LI MY KCG + +
Sbjct: 216 EGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSD 275
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
AL F + + WN +I G + KE+L +F EM + G+TPD IT + +LSAC
Sbjct: 276 ALEAFQAMPARYTKS--WNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSAC 333
Query: 309 AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352
A G + + + + G+ + +++ ++ G + A
Sbjct: 334 AQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAA 377
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 127/259 (49%), Gaps = 8/259 (3%)
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
+M AR+VF+ M + N W+ +I GY C ++AL +F EMR G + T+ +V+
Sbjct: 67 DMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVS 126
Query: 204 ACAHLGAL---DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
A A L G + + G + + + + L++ Y +++EA VF E ++
Sbjct: 127 ASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFE--EMYE 184
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
DV+ W +MI A G + L++ +EMQ GI P+++T + LLSAC V E +
Sbjct: 185 RDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWV 244
Query: 321 FKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG-CMNHG 379
+ +GK G+ + ++ ++ G +++A E MP T S +L+ G NH
Sbjct: 245 YNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKS-WNTLIDGFVQNHE 303
Query: 380 KLDLAEIVGKKLVE-LQPD 397
+ I + L+ + PD
Sbjct: 304 HKEALRIFEEMLLHGVTPD 322
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 133/299 (44%), Gaps = 39/299 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + +V ++ + W ++ GY K + +LF +M A V + L
Sbjct: 372 GDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLL 431
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A +L + +H+ I + DL + ++L+ MY CG I A E+F M K ++
Sbjct: 432 SACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTL 491
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+M+ G A +GY KEA+ +F++M ++
Sbjct: 492 SWNAMIGGLAS--------------------------NGY-----GKEAVELFDQMLELQ 520
Query: 191 S-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
K + +TL +VL ACAH+G +D+G M G+ ++D+ + G + EA
Sbjct: 521 DPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGMLDEA 580
Query: 250 LIVFHGVEKH--QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
FH ++K + + +IW +++ +H + L IV + P+++ L+S
Sbjct: 581 ---FHFIKKMPIEPNPVIWGSLLAACRVHH--RMDLGKVIGQHIVNVAPNDVGVHVLVS 634
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 155/438 (35%), Positives = 250/438 (57%), Gaps = 12/438 (2%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYPF 68
LG ++ +V + WN +I GY + K +++ ++ +M + + P+ T
Sbjct: 156 LGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVS 215
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDL--FISNSLIHMYGSCGDIVYAREVFDGMPT 126
A L EL +H IA E DL + N+L+ MY CG + ARE+FD M
Sbjct: 216 TLSACAVLRNLELGKEIHDYIAN---ELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIV 272
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
K W SM+ GY CG+++ AR +FE P R+VV W+A+I+GYV+ +++A+ +F EM
Sbjct: 273 KNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEM 332
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ G + ++ +V++L CA LGAL+QG+ + Y+ + + + + T+LI+MYAKCG I
Sbjct: 333 QIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCI 392
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+++L +F+G++ D W ++I GLAM+G E+LELF MQ G+ PD+ITF+ +LS
Sbjct: 393 EKSLEIFNGLK--DMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLS 450
Query: 307 ACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMP---LE 362
AC H GLV E F S+ + P EHY C +D L RAG + EA E + ++P E
Sbjct: 451 ACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNE 510
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
+ G+LL+ C +G +D+ E + L +++ + L+++YA RW++ R R
Sbjct: 511 IIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVR 570
Query: 423 EAMETRGVKKYPGWSFVE 440
M+ G+KK PG+S +E
Sbjct: 571 SKMKDLGIKKVPGYSAIE 588
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 117/431 (27%), Positives = 208/431 (48%), Gaps = 69/431 (16%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++FS S LG+ +Y+ ++ +H+ +P +F +N +I+ + K + +ISLF ++ GV
Sbjct: 46 LMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVW 105
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+ TYP++ K G + + +HA + KTG E D ++ NSL+ MY G + +V
Sbjct: 106 PDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQV 165
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
F+ MP + +VSWN M+ GY V+C ++EA+
Sbjct: 166 FEEMPERDAVSWNIMISGY-------------------------------VRCKRFEEAV 194
Query: 181 VIFEEMR-DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
++ M+ + K NE T+VS L ACA L L+ G+ + Y+ ++ L LT + +L+DM
Sbjct: 195 DVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANE-LDLTPIMGNALLDM 253
Query: 240 YAKCGAIKEALIVFHGV----------------------------EKHQS-DVLIWNAMI 270
Y KCG + A +F + E+ S DV++W AMI
Sbjct: 254 YCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMI 313
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
G ++++ LF EMQI G+ PD+ + LL+ CA G + + + + + +
Sbjct: 314 NGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIK 373
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK----LDLAEI 386
+ +++ ++ G + ++ E + T S S++ G +GK L+L E
Sbjct: 374 MDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWT-SIICGLAMNGKTSEALELFEA 432
Query: 387 VGKKLVELQPD 397
+ + L+PD
Sbjct: 433 M--QTCGLKPD 441
>gi|297846320|ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 586
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 166/449 (36%), Positives = 251/449 (55%), Gaps = 12/449 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSK--NPNKSISLFVKML-RA 57
+L F L L N+ Y+ + S P + V+ GYS S + + + S F M+ R+
Sbjct: 62 LLRFCTLR-LCNLSYARFIFDRFSFPNTHLYAAVLTGYSSSLPLHASSAFSFFRLMVNRS 120
Query: 58 GVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGS-CGDIVY 116
P+H YP + K++ L+ VH + K+G+ + + +L+H Y S I
Sbjct: 121 FPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITL 180
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
AR++FD M + VSW +ML GYA+ G++ A +FE MPER+V SW+A++ + G +
Sbjct: 181 ARQLFDEMSERNVVSWTAMLSGYARSGDIFNAVALFEEMPERDVPSWNAILAACTQNGLF 240
Query: 177 KEALVIFEEM-RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
EA+ +F M D + NEVTLV VL ACA G L + + + + LS + + S
Sbjct: 241 VEAVSLFRRMINDPCIRPNEVTLVCVLSACAQTGTLQLAKGIHAFAYRRNLSSDVFVSNS 300
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-- 293
L+D+Y KCG ++EA VF K + WN+MI A+HG +E++ +F +M +
Sbjct: 301 LVDLYGKCGNLEEASSVFKMSSK--KSLTAWNSMINCFALHGRSEEAIAVFEDMMKLNSH 358
Query: 294 -ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTE 351
I PD ITF+GLL+AC HGGLV + +F + KR G+ P+ EHY C++D L RAGQ E
Sbjct: 359 DIKPDHITFIGLLNACTHGGLVSKGRGYFDLMKKRFGIEPRIEHYGCLIDLLGRAGQFDE 418
Query: 352 AYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI 411
A E + M +E ++ GSLL C +G LDLAE+ K LV L P++ G ++N+Y
Sbjct: 419 ALETMSTMKMEADEAIWGSLLNACKKYGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGE 478
Query: 412 FKRWDEARTTREAMETRGVKKYPGWSFVE 440
W+EAR R+ ++ + K PGWS +E
Sbjct: 479 MGNWEEARRARKMIKHQNAYKPPGWSQIE 507
>gi|242037745|ref|XP_002466267.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
gi|241920121|gb|EER93265.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
Length = 537
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 168/451 (37%), Positives = 246/451 (54%), Gaps = 16/451 (3%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD- 62
SA + LG ++ + + +P + + R ++ S +++++F ML GV PD
Sbjct: 54 LSAYAALGRPRHARDLFDEMPDPGLVTRTAMARAHAASGQTAQALAVFGDMLADGVLPDN 113
Query: 63 ----------HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG 112
H T F A A G A R VHA I +G D+F+S LI +YG G
Sbjct: 114 VALAVALAACHGTGSFPA-ALGMAAARRPGKMVHALIVTSGIVPDVFVSTELIRLYGEYG 172
Query: 113 DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVK 172
+++ +R +FD MP K +VSWN+M+ Y + + A ++F MP+R+VVSW+ +I GY
Sbjct: 173 ELLVSRRLFDAMPVKSTVSWNAMVHQYIRHSNVGDAYELFLAMPKRDVVSWNTIIAGYCL 232
Query: 173 CGDYKEALVIFEEMRDVGS---KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229
G + EAL +F +M S N T+ +VL ACA G L+ G + Y+ ++
Sbjct: 233 IGRFMEALELFRQMMSPSSCPVHPNGPTISTVLAACAGAGCLETGIWVHAYIDRNRMNDD 292
Query: 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
L SLIDMYAKCG+I++AL VF + D+ W +I GLAMHG ++L +F M
Sbjct: 293 GSLDRSLIDMYAKCGSIEKALQVFEKAPG-KRDLYSWTTVICGLAMHGKAADALRMFGMM 351
Query: 290 QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQV 349
Q GI PD++T +G+L+ACAHGGLV E + F SL K + PK EHY C++D L R G++
Sbjct: 352 QDNGIRPDDVTLVGVLNACAHGGLVDEGLHHFYSLEKYAITPKIEHYGCVIDLLGRVGRL 411
Query: 350 TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409
EAY I M ++P A + G+ L C H ++L EI +L L PD V LS++Y
Sbjct: 412 QEAYSIIRTMRMKPNAVIWGAFLNACKVHSNVELGEIAAAELTRLDPDDPWAKVMLSSLY 471
Query: 410 AIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
A + W R M + +KK PG S +E
Sbjct: 472 AKAQDWSSLARERREMNSLQMKKTPGCSSIE 502
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 119/290 (41%), Gaps = 42/290 (14%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
++L YA G AR +F+ MP+ +V+ +A+ + G +AL +F +M G
Sbjct: 51 TALLSAYAALGRPRHARDLFDEMPDPGLVTRTAMARAHAASGQTAQALAVFGDMLADGVL 110
Query: 193 ANEVTLVSVLCAC-------AHLG---ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
+ V L L AC A LG A G+M+ ++ G+ + + T LI +Y +
Sbjct: 111 PDNVALAVALAACHGTGSFPAALGMAAARRPGKMVHALIVTSGIVPDVFVSTELIRLYGE 170
Query: 243 CGAIKEALIVF---------------HGVEKHQS--------------DVLIWNAMIGGL 273
G + + +F H +H + DV+ WN +I G
Sbjct: 171 YGELLVSRRLFDAMPVKSTVSWNAMVHQYIRHSNVGDAYELFLAMPKRDVVSWNTIIAGY 230
Query: 274 AMHGFVKESLELFTEM---QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
+ G E+LELF +M + P+ T +L+ACA G + + + + M
Sbjct: 231 CLIGRFMEALELFRQMMSPSSCPVHPNGPTISTVLAACAGAGCLETGIWVHAYIDRNRMN 290
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
++D ++ G + +A + + P + +++ G HGK
Sbjct: 291 DDGSLDRSLIDMYAKCGSIEKALQVFEKAPGKRDLYSWTTVICGLAMHGK 340
>gi|224141027|ref|XP_002323876.1| predicted protein [Populus trichocarpa]
gi|222866878|gb|EEF04009.1| predicted protein [Populus trichocarpa]
Length = 410
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 158/406 (38%), Positives = 240/406 (59%), Gaps = 11/406 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
ML F+A+S G++ Y+ ++ L +P F++NT+IRGY+KS P+ S+ L +M + GV
Sbjct: 1 MLRFAAVSPSGDLAYAQRLFDQLPHPNTFFYNTLIRGYAKSSIPSYSLHLVNQMRQNGVD 60
Query: 61 PDHLTYPFLAKASGRLA---KRELAVAV-----HAQIAKTGYESDLFISNSLIHMYGSCG 112
PD T+ FL KA R+ R L + V H + K G+ S LF+ N+LIH+Y + G
Sbjct: 61 PDEFTFNFLIKARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHLYAARG 120
Query: 113 DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVK 172
+ V A VFD VSW+ ++ + + GE+ AR VF+ MPER+VVSW+ ++ Y +
Sbjct: 121 NPVVAWRVFDETVGVDVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQ 180
Query: 173 CGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPL 232
+EAL ++ M D G + +EVTLVSV+ AC +LG L G + Y+ + G + L
Sbjct: 181 AKYSREALELYVTMLDKGVRPDEVTLVSVISACTNLGDLQMGYSVHSYIDENGFRWMVSL 240
Query: 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292
+LIDMYAKCG + A VF+ + + ++ WN+MI A + +++ LF+ M
Sbjct: 241 CNALIDMYAKCGCMDRAWQVFNSMSR--KSLVTWNSMISACANNRNPEDAFGLFSRMFNY 298
Query: 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTE 351
G+ PD +TFL +L+A AH GLV E + F+S+ + G+ + EHY C+V+ L +AG + E
Sbjct: 299 GVAPDGVTFLAVLTAYAHVGLVDEGYRLFESMQRDHGIEARIEHYGCVVNMLGQAGWLEE 358
Query: 352 AYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397
A+E I MPL + G LL C HG + + E V KKL+EL+ D
Sbjct: 359 AFELITSMPLPSNDVVWGVLLAACRKHGDVYMGERVVKKLLELKLD 404
>gi|147852347|emb|CAN80116.1| hypothetical protein VITISV_032528 [Vitis vinifera]
Length = 505
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 162/444 (36%), Positives = 250/444 (56%), Gaps = 37/444 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L F A S LGN++++ +LS + WN +IR Y+ +P ++I +++M G+S
Sbjct: 57 LLRFCASSPLGNLNHARVLLSGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGIS 116
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD LT+P L KA ++ + + K G + ++++ N++IH YGS
Sbjct: 117 PDKLTFPILLKACAXISAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGS---------- 166
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
C + AR++F+ M R VVSW+A++ V ++
Sbjct: 167 ---------------------CKRIRDARRMFDEMSYRTVVSWNAVLSACVDNEWLNDSF 205
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F +MR G +E T+V +L AC+ LG L GR + +I+KG+ + L T+L+DMY
Sbjct: 206 GLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKGMVVNCRLGTALVDMY 265
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCGA+ EA +VFH + + +V W+AMI GLA HGF KE+LELF +M+ I+P+ +T
Sbjct: 266 AKCGAVCEASLVFHRML--ERNVWTWSAMILGLAQHGFAKEALELFPKMKQSSISPNYVT 323
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
FLG+L AC+H GLV + + FF + G+ P HY MVD LSRAG++ EAY FI M
Sbjct: 324 FLGVLCACSHAGLVDDGYRFFHDMEYVHGIEPMMIHYGAMVDILSRAGRLKEAYNFILNM 383
Query: 360 PLEPTASMLGSLLTGCMNHGKLD---LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWD 416
P+E + +LL+ C HG D + + V K+L+EL+P G +V ++N+YA +WD
Sbjct: 384 PVEADPVVWRTLLSACTIHGINDNDGVGDKVRKRLLELEPRRSGNFVMVANMYAEVGKWD 443
Query: 417 EARTTREAMETRGVKKYPGWSFVE 440
+A R M+ G+KK G S +E
Sbjct: 444 KAANVRRTMKDTGLKKMAGESCIE 467
>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 158/406 (38%), Positives = 240/406 (59%), Gaps = 11/406 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
ML F+A+S G++ Y+ ++ L +P F++NT+IRGY+KS P+ S+ L +M + GV
Sbjct: 33 MLRFAAVSPSGDLAYAQRLFDQLPHPNTFFYNTLIRGYAKSSIPSYSLHLVNQMRQNGVD 92
Query: 61 PDHLTYPFLAKASGRLA---KRELAVAV-----HAQIAKTGYESDLFISNSLIHMYGSCG 112
PD T+ FL KA R+ R L + V H + K G+ S LF+ N+LIH+Y + G
Sbjct: 93 PDEFTFNFLIKARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHLYAARG 152
Query: 113 DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVK 172
+ V A VFD VSW+ ++ + + GE+ AR VF+ MPER+VVSW+ ++ Y +
Sbjct: 153 NPVVAWRVFDETVGVDVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQ 212
Query: 173 CGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPL 232
+EAL ++ M D G + +EVTLVSV+ AC +LG L G + Y+ + G + L
Sbjct: 213 AKYSREALELYVTMLDKGVRPDEVTLVSVISACTNLGDLQMGYSVHSYIDENGFRWMVSL 272
Query: 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292
+LIDMYAKCG + A VF+ + + ++ WN+MI A + +++ LF+ M
Sbjct: 273 CNALIDMYAKCGCMDRAWQVFNSMSR--KSLVTWNSMISACANNRNPEDAFGLFSRMFNY 330
Query: 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTE 351
G+ PD +TFL +L+A AH GLV E + F+S+ + G+ + EHY C+V+ L +AG + E
Sbjct: 331 GVAPDGVTFLAVLTAYAHVGLVDEGYRLFESMQRDHGIEARIEHYGCVVNMLGQAGWLEE 390
Query: 352 AYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397
A+E I MPL + G LL C HG + + E V KKL+EL+ D
Sbjct: 391 AFELITSMPLPSNDVVWGVLLAACRKHGDVYMGERVVKKLLELKLD 436
>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 656
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 167/435 (38%), Positives = 243/435 (55%), Gaps = 10/435 (2%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + +V IF W +I + ++ +++ +F M R H+ P +
Sbjct: 214 GMVDEARRVFDAAECRDIFTWTAMISCFERNDMFAEALHVFSCMRRERW---HVDEPLMV 270
Query: 71 KASGRLAKREL---AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
A+ E+ H + + G S + + N+LIHMY SC D+ AR +FD
Sbjct: 271 SVVSACAQSEVIQNGQMCHGLVIRAGLCSQVNVQNALIHMYSSCLDVFAARRLFDSGECL 330
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
SWNSM+ GY K G + A +F MP ++ VSWS +I G V+ +AL +F+ M+
Sbjct: 331 DQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDALTVFDNMQ 390
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G + +EVT+VSV+ AC +L AL++G+ + Y+ ++L L TSLI+MY KCG ++
Sbjct: 391 AQGIRPDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYVSLVLGTSLINMYMKCGCLE 450
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI-TPDEITFLGLLS 306
AL F+ +E+ + WNA+I GLAM+G V +SL++F+EM+ TP+EITF G+LS
Sbjct: 451 AALEAFNIMEEKGTPC--WNAVIVGLAMNGLVMKSLDMFSEMEASDTATPNEITFTGVLS 508
Query: 307 ACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC H GLV E +FFK + R +VP HY CMVD L RAG V EA + I MP+ P
Sbjct: 509 ACRHAGLVDEGRHFFKLMQHRYQIVPNIRHYGCMVDLLGRAGYVKEAEDMIQSMPMSPDV 568
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
G+LL C HG+ ++ E VG+KLV P HDG LSN+YA W R +M
Sbjct: 569 PAWGALLGACWKHGEYEVGERVGRKLVNRDPLHDGFQTMLSNIYAKEGMWQSVDDLRGSM 628
Query: 426 ETRGVKKYPGWSFVE 440
+ R V+K G S V+
Sbjct: 629 KQRHVQKVSGHSVVK 643
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 180/404 (44%), Gaps = 43/404 (10%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
+S ++L + P F NT+++ P+ + L+ + PD T+P LA A
Sbjct: 58 HSLRLLRLVRYPNAFSCNTLLKSALIGGMPHLCLPLYASL---PAPPDSYTHPILAAACA 114
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
VHA G+ +L++ N+LI MY +CG + AR VFD P +VSWN+
Sbjct: 115 SRKDVIEGRQVHAHAVSHGFGDNLYLRNALIFMYSACGCLWDARRVFDAGPVWDAVSWNT 174
Query: 135 MLDGYAKCGEMNMARQVFELMPERN-------------------------------VVSW 163
+L Y G+++ A +VF MP+RN + +W
Sbjct: 175 ILAAYVHAGDVDQAVEVFAQMPKRNATAVSSMVSLFGRRGMVDEARRVFDAAECRDIFTW 234
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
+A+I + + + EAL +F MR +E +VSV+ ACA + G+M +I
Sbjct: 235 TAMISCFERNDMFAEALHVFSCMRRERWHVDEPLMVSVVSACAQSEVIQNGQMCHGLVIR 294
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
GL + +Q +LI MY+ C + A +F E D WN+MI G +G VK+++
Sbjct: 295 AGLCSQVNVQNALIHMYSSCLDVFAARRLFDSGEC--LDQYSWNSMIAGYLKNGHVKDAM 352
Query: 284 ELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDA- 342
LF+ M D +++ ++S C +A F ++ +G+ P ++ A
Sbjct: 353 ALFSAMP----NKDNVSWSTVISGCVQNNQSSDALTVFDNMQAQGIRPDEVTIVSVISAC 408
Query: 343 --LSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
LS + +E+I Q + + SL+ M G L+ A
Sbjct: 409 TNLSALEKGKSVHEYIKQNQYYVSLVLGTSLINMYMKCGCLEAA 452
>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 151/433 (34%), Positives = 259/433 (59%), Gaps = 8/433 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G+++ + + + + WN + Y++ + P ++++LF +ML G++PD T+
Sbjct: 205 MGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVT 264
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT-KM 128
+ + LA ++ I + + F+ +L+ M+ G++ AR +FD + + +
Sbjct: 265 ISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRN 324
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
+V+WN M+ Y + G++++AR++F+ MP+R+VVSW+++I GY + G+ ++ +F+EM
Sbjct: 325 AVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMIS 384
Query: 189 -VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
+ + +EVT+ SVL AC H+GAL +L + +K + L + SLI MY+KCG++
Sbjct: 385 CMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVA 444
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
+A +F + DV+ +N +I G A +G KE+++L M+ GI PD +T++G+L+A
Sbjct: 445 DAHRIFQTMGTR--DVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTA 502
Query: 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
C+H GL+ E FKS+ P +HYACMVD L RAG++ EA I MP++P A +
Sbjct: 503 CSHAGLLNEGKNVFKSI----QAPTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGV 558
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
GSLL H ++ L E+ KL EL+P + G YV LSN+YA F RW++ + RE M+
Sbjct: 559 YGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKK 618
Query: 428 RGVKKYPGWSFVE 440
G+KK G S+VE
Sbjct: 619 GGLKKSVGMSWVE 631
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/483 (24%), Positives = 218/483 (45%), Gaps = 71/483 (14%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y + + +P ++ +++ YS+ N+ +SLF + P Y +L K +G
Sbjct: 52 YVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAG 111
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM---------- 124
+ HA + K G+ D FI N+++ MY G + AR +F+ M
Sbjct: 112 KSGN-----LFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNS 166
Query: 125 ---------------------PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSW 163
P + ++W SM+ GYAK G++ AR+ F+ MPER+VVSW
Sbjct: 167 MISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSW 226
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
+A+ Y + KEAL +F +M + G ++ T V + +C+ +G +LR +
Sbjct: 227 NAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQ 286
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFH--GVEKH---------------------- 259
K + L ++T+L+DM+AK G ++ A +F G +++
Sbjct: 287 KHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARE 346
Query: 260 ------QSDVLIWNAMIGGLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLSACAHGG 312
+ DV+ WN+MI G A +G S+ELF EM + I PDE+T +LSAC H G
Sbjct: 347 LFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIG 406
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
+ +++ + ++ + + ++ S+ G V +A+ M S +L+
Sbjct: 407 ALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVS-FNTLI 465
Query: 373 TG--CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
+G HGK + ++ + ++PDH Y+G+ + +E + ++++ V
Sbjct: 466 SGFAANGHGKEAIKLVLTMEEEGIEPDH-VTYIGVLTACSHAGLLNEGKNVFKSIQAPTV 524
Query: 431 KKY 433
Y
Sbjct: 525 DHY 527
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 112/247 (45%), Gaps = 36/247 (14%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPD 62
SA + +G + + ++ ++ + WN++I GY+++ SI LF +M+ + PD
Sbjct: 332 ISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPD 391
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
+T + A G + +L+ V + + + + NSLI MY CG + A +F
Sbjct: 392 EVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQ 451
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
M T+ VS+N+++ G+A G KEA+ +
Sbjct: 452 TMGTRDVVSFNTLISGFAANGHG-------------------------------KEAIKL 480
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
M + G + + VT + VL AC+H G L++G+ + + + + T+ ++D+ +
Sbjct: 481 VLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSI----QAPTVDHYACMVDLLGR 536
Query: 243 CGAIKEA 249
G + EA
Sbjct: 537 AGELDEA 543
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 89/200 (44%), Gaps = 30/200 (15%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G++ + ++ + + +NT+I G++ + + ++I L + M G+ PDH+TY
Sbjct: 438 SKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYI 497
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFIS---------NSLIHMYGSCGDIVYAR 118
+ L HA + G ++F S ++ + G G++ A+
Sbjct: 498 GV-----------LTACSHAGLLNEG--KNVFKSIQAPTVDHYACMVDLLGRAGELDEAK 544
Query: 119 EVFDGMPTKMSVS-WNSMLDG-----YAKCGEMNMARQVFELMPERNVVSWSALIDGYVK 172
+ MP K + S+L+ GE+ A ++FEL P+ N+ ++ L + Y
Sbjct: 545 MLIQSMPMKPHAGVYGSLLNASRIHKRVGLGEL-AASKLFELEPQ-NLGNYVLLSNIYAS 602
Query: 173 CGDYKEALVIFEEMRDVGSK 192
G +++ + E M+ G K
Sbjct: 603 FGRWEDVKRVREMMKKGGLK 622
>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 151/433 (34%), Positives = 259/433 (59%), Gaps = 8/433 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G+++ + + + + WN + Y++ + P ++++LF +ML G++PD T+
Sbjct: 205 MGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVT 264
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT-KM 128
+ + LA ++ I + + F+ +L+ M+ G++ AR +FD + + +
Sbjct: 265 ISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRN 324
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
+V+WN M+ Y + G++++AR++F+ MP+R+VVSW+++I GY + G+ ++ +F+EM
Sbjct: 325 AVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMIS 384
Query: 189 -VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
+ + +EVT+ SVL AC H+GAL +L + +K + L + SLI MY+KCG++
Sbjct: 385 CMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVA 444
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
+A +F + DV+ +N +I G A +G KE+++L M+ GI PD +T++G+L+A
Sbjct: 445 DAHRIFQTMGTR--DVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTA 502
Query: 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
C+H GL+ E FKS+ P +HYACMVD L RAG++ EA I MP++P A +
Sbjct: 503 CSHAGLLNEGKNVFKSI----QAPTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGV 558
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
GSLL H ++ L E+ KL EL+P + G YV LSN+YA F RW++ + RE M+
Sbjct: 559 YGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKK 618
Query: 428 RGVKKYPGWSFVE 440
G+KK G S+VE
Sbjct: 619 GGLKKSVGMSWVE 631
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/483 (24%), Positives = 218/483 (45%), Gaps = 71/483 (14%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y + + +P ++ +++ YS+ N+ +SLF + P Y +L K +G
Sbjct: 52 YVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAG 111
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM---------- 124
+ HA + K G+ D FI N+++ MY G + AR +F+ M
Sbjct: 112 KSGN-----MFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNS 166
Query: 125 ---------------------PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSW 163
P + ++W SM+ GYAK G++ AR+ F+ MPER+VVSW
Sbjct: 167 MISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSW 226
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
+A+ Y + KEAL +F +M + G ++ T V + +C+ +G +LR +
Sbjct: 227 NAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQ 286
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFH--GVEKH---------------------- 259
K + L ++T+L+DM+AK G ++ A +F G +++
Sbjct: 287 KHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARE 346
Query: 260 ------QSDVLIWNAMIGGLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLSACAHGG 312
+ DV+ WN+MI G A +G S+ELF EM + I PDE+T +LSAC H G
Sbjct: 347 LFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIG 406
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
+ +++ + ++ + + ++ S+ G V +A+ M S +L+
Sbjct: 407 ALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVS-FNTLI 465
Query: 373 TG--CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
+G HGK + ++ + ++PDH Y+G+ + +E + ++++ V
Sbjct: 466 SGFAANGHGKEAIKLVLTMEEEGIEPDH-VTYIGVLTACSHAGLLNEGKNVFKSIQAPTV 524
Query: 431 KKY 433
Y
Sbjct: 525 DHY 527
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 112/247 (45%), Gaps = 36/247 (14%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPD 62
SA + +G + + ++ ++ + WN++I GY+++ SI LF +M+ + PD
Sbjct: 332 ISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPD 391
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
+T + A G + +L+ V + + + + NSLI MY CG + A +F
Sbjct: 392 EVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQ 451
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
M T+ VS+N+++ G+A G KEA+ +
Sbjct: 452 TMGTRDVVSFNTLISGFAANGHG-------------------------------KEAIKL 480
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
M + G + + VT + VL AC+H G L++G+ + + + + T+ ++D+ +
Sbjct: 481 VLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSI----QAPTVDHYACMVDLLGR 536
Query: 243 CGAIKEA 249
G + EA
Sbjct: 537 AGELDEA 543
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 89/200 (44%), Gaps = 30/200 (15%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G++ + ++ + + +NT+I G++ + + ++I L + M G+ PDH+TY
Sbjct: 438 SKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYI 497
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFIS---------NSLIHMYGSCGDIVYAR 118
+ L HA + G ++F S ++ + G G++ A+
Sbjct: 498 GV-----------LTACSHAGLLNEG--KNVFKSIQAPTVDHYACMVDLLGRAGELDEAK 544
Query: 119 EVFDGMPTKMSVS-WNSMLDG-----YAKCGEMNMARQVFELMPERNVVSWSALIDGYVK 172
+ MP K + S+L+ GE+ A ++FEL P+ N+ ++ L + Y
Sbjct: 545 MLIQSMPMKPHAGVYGSLLNASRIHKRVGLGEL-AASKLFELEPQ-NLGNYVLLSNIYAS 602
Query: 173 CGDYKEALVIFEEMRDVGSK 192
G +++ + E M+ G K
Sbjct: 603 FGRWEDVKRVREMMKKGGLK 622
>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 613
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/438 (36%), Positives = 248/438 (56%), Gaps = 8/438 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
G+ +C+V +NTVI G ++ S+ +F +M V PD T+ L
Sbjct: 128 FGDARNACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVAL 187
Query: 70 AKASGRLAKRELAVAVHAQIAKT--GYESDLFISNSLIHMYGSCGDI-VYAREVFDGMPT 126
A L R + VH + + + + + N+L+ MY CG + V R V +G
Sbjct: 188 LSACSLLEDRGIGRVVHGLVYRKLGCFGENELLVNALVDMYAKCGCLEVAERVVRNGNGK 247
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+W S++ YA GE+ +AR++F+ M ER+VVSW+A+I GY G ++EAL +F E+
Sbjct: 248 SGVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVEL 307
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG---LSLTLPLQTSLIDMYAKC 243
D+G + +EV +V+ L ACA LGAL+ GR + + D+ +++DMYAKC
Sbjct: 308 EDLGMEPDEVVVVAALSACARLGALELGRR-IHHKYDRDSWQCGHNRGFTCAVVDMYAKC 366
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G+I+ AL VF ++N+++ GLA HG + ++ LF EM++VG+ PDE+T++
Sbjct: 367 GSIEAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTYVA 426
Query: 304 LLSACAHGGLVMEAWYFFKS-LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
LL AC H GLV F+S L + G+ P+ EHY CMVD L RAG + EAY I MP +
Sbjct: 427 LLCACGHSGLVDHGKRLFESMLSEYGVNPQMEHYGCMVDLLGRAGHLNEAYLLIQNMPFK 486
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
A + +LL+ C G ++LA + ++L+ ++ DH RYV LSN+ + + DEA + R
Sbjct: 487 ANAVIWRALLSACKVDGDVELARLASQELLAMENDHGARYVMLSNMLTLMDKHDEAASVR 546
Query: 423 EAMETRGVKKYPGWSFVE 440
A++ G++K PGWS VE
Sbjct: 547 RAIDNVGIQKPPGWSHVE 564
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 124/444 (27%), Positives = 210/444 (47%), Gaps = 71/444 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-- 58
++SF A + + +S + + + NP +F +N +IR +S S+ P+ ++SL+ KML +
Sbjct: 16 LISFFAAANSNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPHNALSLYKKMLSSSPP 75
Query: 59 VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
+ PD T+PFL K+ +L+ L + VH + K+G+ES++F+ N+L+ +Y GD A
Sbjct: 76 IFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQVYFVFGDARNAC 135
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
VFD P + SVS+N++++G + G + +
Sbjct: 136 RVFDESPVRDSVSYNTVINGLVRAGRAGCSMR---------------------------- 167
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMM--LRYMIDKGLSLTLPLQTSL 236
IF EMR + +E T V++L AC+ L GR++ L Y L +L
Sbjct: 168 ---IFAEMRGGFVEPDEYTFVALLSACSLLEDRGIGRVVHGLVYRKLGCFGENELLVNAL 224
Query: 237 IDMYAKCGAIKEA-LIVFHGVEKH-----------------------------QSDVLIW 266
+DMYAKCG ++ A +V +G K + DV+ W
Sbjct: 225 VDMYAKCGCLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSW 284
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAWYFFKSLG 325
AMI G G +E+LELF E++ +G+ PDE+ + LSACA G L + K
Sbjct: 285 TAMISGYCHAGCFQEALELFVELEDLGMEPDEVVVVAALSACARLGALELGRRIHHKYDR 344
Query: 326 KRGMVPKSEHYAC-MVDALSRAGQVTEAYEFICQMPLE-PTASMLGSLLTGCMNHGKLD- 382
+ + C +VD ++ G + A + + + T + S+++G +HG+ +
Sbjct: 345 DSWQCGHNRGFTCAVVDMYAKCGSIEAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEH 404
Query: 383 -LAEIVGKKLVELQPDHDGRYVGL 405
+A +LV L+PD + YV L
Sbjct: 405 AMALFEEMRLVGLEPD-EVTYVAL 427
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 158/432 (36%), Positives = 230/432 (53%), Gaps = 34/432 (7%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
ID + V + NP F WN +IRG++ S+ L+ KM+ G+ PD +PF
Sbjct: 765 FNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFA 824
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
K+ L+ + +H + G +DLF+ +L+ MY CGDI AR VFD M +
Sbjct: 825 LKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDL 884
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSW SM+ GYA +GY E L F+ MR
Sbjct: 885 VSWTSMISGYAH--------------------------NGY-----NSETLGFFDLMRSS 913
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G N V+++SVL AC +LGAL +G Y+I G + + T+++DMY+KCG++ A
Sbjct: 914 GVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLA 973
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+F E D++ W+AMI +HG +++++LF +M G+ P +TF +LSAC+
Sbjct: 974 RCLFD--ETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACS 1031
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKS-EHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GL+ E +F+ + + ++ + +YACMVD L RAGQ++EA + I MP+EP AS+
Sbjct: 1032 HSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIW 1091
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
GSLL C H LDLAE + L L P H G +V LSN+YA RW+E R+ M R
Sbjct: 1092 GSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARR 1151
Query: 429 GVKKYPGWSFVE 440
G K G+S VE
Sbjct: 1152 GANKIQGFSLVE 1163
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 132/427 (30%), Positives = 217/427 (50%), Gaps = 35/427 (8%)
Query: 16 SCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGR 75
+ + S + + W+T+I Y+ ++ N++++LF +M+ P+ +T +A
Sbjct: 260 AANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAV 319
Query: 76 LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSM 135
E +H G+E D +S +LI MY C A ++F +P K VSW ++
Sbjct: 320 SRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVAL 379
Query: 136 LDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE 195
L GYA+ G MA YK ++ +F M G + +
Sbjct: 380 LSGYAQNG---MA---------------------------YK-SMGVFRNMLSDGIQPDA 408
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
V +V +L A + LG Q + Y++ G + + + SLI++Y+KCG++ +A+ +F G
Sbjct: 409 VAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKG 468
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLSACAHGGLV 314
+ DV+IW++MI +HG E+LE+F +M + + P+ +TFL +LSAC+H GLV
Sbjct: 469 MIVR--DVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLV 526
Query: 315 MEAWYFF-KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
E F + + + P SEH+ MVD L R GQ+ +A + I +MP+ + G+LL
Sbjct: 527 EEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLG 586
Query: 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
C H +++ E K L L P H G Y+ LSN+YA+ +WD R ++ RG+KK
Sbjct: 587 ACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKM 646
Query: 434 PGWSFVE 440
G S VE
Sbjct: 647 FGQSMVE 653
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 115/431 (26%), Positives = 193/431 (44%), Gaps = 72/431 (16%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTY 66
S G + + KV P W +++ GY ++ +P ++++LF +M+ V D +T
Sbjct: 150 SKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTL 209
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A +L + VH + + ++ DL + NSL
Sbjct: 210 VSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSL---------------------- 247
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
L+ YAK G +A +F MPE++V+SWS +I Y EAL +F EM
Sbjct: 248 ---------LNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEM 298
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ + N VT+VS L ACA L++G+ + + + KG L + T+LIDMY KC
Sbjct: 299 IEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCP 358
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
EA+ +F + K DV+ W A++ G A +G +S+ +F M GI PD + + +L+
Sbjct: 359 DEAVDLFQRLPK--KDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILA 416
Query: 307 A-----------CAHGGLV--------------MEAWYFFKSLGK-----RGMVPKSEH- 335
A C HG +V +E + SLG +GM+ +
Sbjct: 417 ASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVI 476
Query: 336 YACMVDALSRAGQVTEAYEFICQM----PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL 391
++ M+ A G+ EA E QM + P S+L+ C + G ++ + ++
Sbjct: 477 WSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRM 536
Query: 392 V---ELQPDHD 399
V +L+PD +
Sbjct: 537 VHDYQLRPDSE 547
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 175/386 (45%), Gaps = 41/386 (10%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPFLAKASGRL 76
KV +P + WN+ +R Y + K +++ LF M+ AG +PD+ T P KA L
Sbjct: 57 KVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGL 116
Query: 77 AKRELAVAVHAQIAKTGYE--SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
EL +H AK E SD+F+ ++L+ +Y
Sbjct: 117 RMLELGKVIHG-FAKKNDEIGSDMFVGSALVELY-------------------------- 149
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA- 193
+KCG+M A +VFE + V W++++ GY + D +EAL +F +M +
Sbjct: 150 -----SKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVL 204
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+ VTLVSV+ ACA L + G + +I + LPL SL+++YAK G K A +F
Sbjct: 205 DPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLF 264
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313
+ + DV+ W+ MI A + E+L LF EM P+ +T + L ACA
Sbjct: 265 SKMP--EKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRN 322
Query: 314 VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
+ E K +G ++D + EA + ++P + S + +LL+
Sbjct: 323 LEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWV-ALLS 381
Query: 374 GCMNHGKLDLAEIVGKKLVE--LQPD 397
G +G + V + ++ +QPD
Sbjct: 382 GYAQNGMAYKSMGVFRNMLSDGIQPD 407
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 36/229 (15%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+H+Q+ KTG D F + L NS+ YAKC
Sbjct: 23 LHSQVFKTGILHDTFFATKL----------------------------NSL---YAKCAS 51
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DVGSKANEVTLVSVLC 203
+ AR+VF+ P NV W++ + Y + ++E L +F M G + T+ L
Sbjct: 52 LQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALK 111
Query: 204 ACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
ACA L L+ G+++ + + + + + ++L+++Y+KCG + EAL VF E + D
Sbjct: 112 ACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFE--EFQRPD 169
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACAH 310
++W +M+ G + +E+L LF++M ++ + D +T + ++SACA
Sbjct: 170 TVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQ 218
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 225 GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLE 284
GL + T MY I A IVF + S +WN MI G A G SLE
Sbjct: 747 GLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCS--FLWNVMIRGFATDGRFLSSLE 804
Query: 285 LFTEMQIVGITPDEITFLGLLSACA 309
L+++M G+ PD+ F L +CA
Sbjct: 805 LYSKMMEKGLKPDKFAFPFALKSCA 829
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 14/159 (8%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G++D + + + + W+ +I Y + K+I LF +M++AGV P H+T+
Sbjct: 965 SKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFT 1024
Query: 68 FLAKA---SGRLAKRELAVAVHAQIAKTGYESDLFISN--SLIHMYGSCGDIVYAREVFD 122
+ A SG L + ++ + Q+ + +SN ++ + G G + A ++ +
Sbjct: 1025 CVLSACSHSGLLEEGKM----YFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIE 1080
Query: 123 GMPTKMSVS-WNSMLDGYAKCGEMNMARQV----FELMP 156
MP + S W S+L +++A ++ F L P
Sbjct: 1081 NMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDP 1119
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 7/144 (4%)
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ-IV 292
T L +YAKC +++ A VF E +V +WN+ + +E+L LF M
Sbjct: 40 TKLNSLYAKCASLQAARKVFD--ETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTA 97
Query: 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHY--ACMVDALSRAGQVT 350
G PD T L ACA G ++E K+ S+ + + +V+ S+ GQ+
Sbjct: 98 GEAPDNFTIPIALKACA-GLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMG 156
Query: 351 EAYEFICQMPLEPTASMLGSLLTG 374
EA + + P + S++TG
Sbjct: 157 EALKVFEEFQ-RPDTVLWTSMVTG 179
>gi|359488917|ref|XP_002283393.2| PREDICTED: ATP-dependent zinc metalloprotease FTSH 6,
chloroplastic-like [Vitis vinifera]
Length = 1146
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 162/444 (36%), Positives = 250/444 (56%), Gaps = 37/444 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L F A S LGN++++ +LS + WN +IR Y+ +P ++I +++M G+S
Sbjct: 698 LLRFCASSPLGNLNHARVLLSGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGIS 757
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD LT+P L KA ++ + + K G + ++++ N++IH YGS
Sbjct: 758 PDKLTFPILLKACAAISAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGS---------- 807
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
C + AR++F+ M R VVSW+A++ V ++
Sbjct: 808 ---------------------CKRIRDARRMFDEMSYRTVVSWNAVLSACVDNEWLNDSF 846
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F +MR G +E T+V +L AC+ LG L GR + +I+KG+ + L T+L+DMY
Sbjct: 847 GLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKGMVVNCRLGTALVDMY 906
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCGA+ EA +VFH + + +V W+AMI GLA HGF KE+LELF +M+ I+P+ +T
Sbjct: 907 AKCGAVCEASLVFHRM--LERNVWTWSAMILGLAQHGFAKEALELFPKMKQSSISPNYVT 964
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
FLG+L AC+H GLV + + FF + G+ P HY MVD LSRAG++ EAY FI M
Sbjct: 965 FLGVLCACSHAGLVDDGYRFFHDMEYVHGIEPMMIHYGAMVDILSRAGRLKEAYNFILNM 1024
Query: 360 PLEPTASMLGSLLTGCMNHGKLD---LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWD 416
P+E + +LL+ C HG D + + V K+L+EL+P G +V ++N+YA +WD
Sbjct: 1025 PVEADPVVWRTLLSACTIHGINDNDGVGDKVRKRLLELEPRRSGNFVMVANMYAEVGKWD 1084
Query: 417 EARTTREAMETRGVKKYPGWSFVE 440
+A R M+ G+KK G S +E
Sbjct: 1085 KAANVRRTMKDTGLKKMAGESCIE 1108
>gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 526
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 170/430 (39%), Positives = 252/430 (58%), Gaps = 9/430 (2%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
YS +H IF +N +I S N ++S+F + R G+S D + P++ K+
Sbjct: 65 YSIFTFNHNRPFPIFVYNNIIYAL-YSSNAKLAVSIFRSVRRLGLSFDSYSLPYVLKSVV 123
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
L L +H TG + ++ + +SLI MY SC D+ AR++FD V N+
Sbjct: 124 CLNDFGLGKQIHCVGVVTGLDKNVSVCSSLIQMY-SCYDVCSARKLFDEFGGNGCV-LNA 181
Query: 135 MLDGYAKCGEMNMARQVFELMPERN--VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
M+ Y K G+++ AR++F+ M ER+ V SW+A+I GY + + EA+ +F M+ K
Sbjct: 182 MIVAYVKVGDVSNARKLFDSMLERDKDVFSWTAMISGYTQAHNPNEAIKLFRRMQLENVK 241
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+E+ +++VL ACA LGAL G + Y+ LS +PL SLIDMYAK G I++AL +
Sbjct: 242 PDEIAILAVLSACADLGALHLGEWIHNYIEKHKLSKIVPLYNSLIDMYAKSGNIRKALEL 301
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACAHG 311
F + KH++ ++ W MI GLA+HG KE+L +F+ M+ + P+E+TF+ +LSAC+H
Sbjct: 302 FENM-KHKT-IITWTTMIAGLALHGLGKEALRVFSCMEKEDRVKPNEVTFIAILSACSHV 359
Query: 312 GLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GLV +F S+ R G+ PK EHY CM+D L RAG + EA E + +MP E A++ GS
Sbjct: 360 GLVELGRDYFTSMRSRYGIEPKIEHYGCMIDLLGRAGHLQEAKEMVLRMPFEANAAIWGS 419
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL G +LAE + L L+P H G Y LSN YA RW+E+R R+ M+ GV
Sbjct: 420 LLAASTRCGDAELAEEALRHLTVLEPGHCGNYSLLSNTYASLGRWNESRMVRKVMQDAGV 479
Query: 431 KKYPGWSFVE 440
+K PG SF+E
Sbjct: 480 EKVPGVSFIE 489
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 91/198 (45%), Gaps = 7/198 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFL 69
GNI + ++ ++ + I W T+I G + +++ +F M + V P+ +T+ +
Sbjct: 293 GNIRKALELFENMKHKTIITWTTMIAGLALHGLGKEALRVFSCMEKEDRVKPNEVTFIAI 352
Query: 70 AKASGRLAKRELAVAVHAQI-AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A + EL + ++ G E + +I + G G + A+E+ MP +
Sbjct: 353 LSACSHVGLVELGRDYFTSMRSRYGIEPKIEHYGCMIDLLGRAGHLQEAKEMVLRMPFEA 412
Query: 129 SVS-WNSMLDGYAKCGEMNMARQVFE---LMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ + W S+L +CG+ +A + ++ + ++S L + Y G + E+ ++ +
Sbjct: 413 NAAIWGSLLAASTRCGDAELAEEALRHLTVLEPGHCGNYSLLSNTYASLGRWNESRMVRK 472
Query: 185 EMRDVG-SKANEVTLVSV 201
M+D G K V+ + V
Sbjct: 473 VMQDAGVEKVPGVSFIEV 490
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 241/434 (55%), Gaps = 38/434 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I + K+ + + WN +I GY+++ N +++ LF +M++ V PD T +
Sbjct: 183 GYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVL 242
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + A EL VH+ I G+ S+L I N+LI
Sbjct: 243 SACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI------------------------- 277
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
D Y KCGE+ A +FE + ++V+SW+ LI GY YKEAL++F+EM G
Sbjct: 278 ------DLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 331
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKCGAIK 247
NEVT++S+L ACAHLGA+D GR + Y IDK G+S L+TSLIDMYAKCG I+
Sbjct: 332 ESPNEVTMLSILPACAHLGAIDIGRWIHVY-IDKRLKGVSNPSSLRTSLIDMYAKCGDIE 390
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VF + + WNAMI G AMHG + ++F+ M+ GI PD+ITF+GLLSA
Sbjct: 391 AAQQVFDSMLNRS--LSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSA 448
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H G++ + F+S+ + + PK EHY CM+D L +G EA E I M ++P
Sbjct: 449 CSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGV 508
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ SLL C HG ++L E + L++++P + G YV LSN+YA RW+E R +
Sbjct: 509 IWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLN 568
Query: 427 TRGVKKYPGWSFVE 440
+G+KK PG S +E
Sbjct: 569 DKGMKKVPGCSSIE 582
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/410 (33%), Positives = 226/410 (55%), Gaps = 9/410 (2%)
Query: 1 MLSFSALS-YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
++ FS LS + + Y+ V + P + WNT+ RG++ S +P ++ L+V M+ G+
Sbjct: 40 LIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGL 99
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T+PFL KA + +H + K G + DL++ SLI MY G AR+
Sbjct: 100 VPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARK 159
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD + VS+ +++ GYA G + A+++F+ +P ++VVSW+ALI GY + G+YKEA
Sbjct: 160 VFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEA 219
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F+EM K +E T+V+VL ACA +++ GR + ++ D G L + +LID+
Sbjct: 220 LELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDL 279
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y KCG ++ A +F G+ DV+ WN +IGG KE+L LF EM G +P+E+
Sbjct: 280 YIKCGEVETASGLFEGLS--YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEV 337
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
T L +L ACAH G + + + KR G+ S ++D ++ G + A +
Sbjct: 338 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFD 397
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRYVGL 405
M L + S +++ G HG+ + A + ++ + ++PD D +VGL
Sbjct: 398 SM-LNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPD-DITFVGL 445
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 260/496 (52%), Gaps = 66/496 (13%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFV-KMLRAGVSPDHLTY 66
S+ ++ ++ + L P F NT++R Y +P ++ + +M+R V+P+H T+
Sbjct: 103 SFPDSVQHAVSLFEGLEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTF 162
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
P L K + +HA+I K G+E DLF+ NSLIHMY CG I AR +F+
Sbjct: 163 PLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSI 222
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
V+WNSM+DGY K GE+ AR++FE MPER++ SW+++I GYV GD A +F +M
Sbjct: 223 SDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKM 282
Query: 187 --RDVGS------KANEVTLVSVLCAC----AHLGALDQGRMMLRY-----------MID 223
RD+ S +V + + C + + M+ Y M D
Sbjct: 283 PFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFD 342
Query: 224 KGLSLTLPLQTSLID---------------------------------------MYAKCG 244
K + T+P + +L+ MYAKCG
Sbjct: 343 KMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCG 402
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
A+ A VF + V+ WN+MI G MHG ++LE+F +M+ G P++ TF+ +
Sbjct: 403 AMDLARDVFDKMSNRS--VVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICV 460
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LSACAH G+++E W++F + + + PK EHY CMVD L RAG + + E I +MP+E
Sbjct: 461 LSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEG 520
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
++ G+LL+ C H +LAEIV K+L+EL+P G Y+ LSN+YA +WD+ R+
Sbjct: 521 GTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRK 580
Query: 424 AMETRGVKKYPGWSFV 439
M+ RG+ K G+S+V
Sbjct: 581 MMKERGLTKTTGFSWV 596
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 155/431 (35%), Positives = 246/431 (57%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I + ++ +N + +NT++ Y + + + + +ML+ G PD +T
Sbjct: 280 GDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTI 339
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A +L + + HA + + G E ISN++I MY CG A +VF+ MP K V
Sbjct: 340 AACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVV 399
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WNS++ G + G+M +A ++F+ M ER++VSW+ +I V+ ++EA+ +F EM++ G
Sbjct: 400 TWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQG 459
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ VT+V + AC +LGALD + + Y+ + + L L T+L+DM+++CG A+
Sbjct: 460 IPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAM 519
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF +EK DV W A IG +AM G + ++ELF EM + PD++ F+ LL+AC+H
Sbjct: 520 HVFKRMEKR--DVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSH 577
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GG V + F S+ K G+ P HY CMVD L RAG + EA + I MP+EP + G
Sbjct: 578 GGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWG 637
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL C H ++LA +KL +L P+ G +V LSN+YA +W + R M+ +G
Sbjct: 638 SLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKG 697
Query: 430 VKKYPGWSFVE 440
V+K PG S +E
Sbjct: 698 VQKVPGSSSIE 708
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/431 (28%), Positives = 191/431 (44%), Gaps = 99/431 (22%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+F +N +IRGY+ + +++I L+V+ML G+ PD T+PFL A ++ V VH
Sbjct: 95 LFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHG 154
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY-------- 139
+ K G E D+F+SNSLIH Y CG + R++FDGM + VSW S+++GY
Sbjct: 155 AVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKE 214
Query: 140 ---------------------------AKCGEMNMARQVF----ELMPERNVVSWSALID 168
AK ++ + ++V EL E + + +AL+D
Sbjct: 215 AVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVD 274
Query: 169 GYVKCGDY-------------------------------KEALVIFEEMRDVGSKANEVT 197
Y+KCGD + LVI +EM G + ++VT
Sbjct: 275 MYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVT 334
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV- 256
++S + ACA LG L G+ Y++ GL + ++IDMY KCG + A VF +
Sbjct: 335 MLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMP 394
Query: 257 ----------------------------EKHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288
E + D++ WN MIG L +E++ELF E
Sbjct: 395 NKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFRE 454
Query: 289 MQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQ 348
MQ GI D +T +G+ SAC + G + A + + K + + +VD SR G
Sbjct: 455 MQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGD 514
Query: 349 VTEAYEFICQM 359
+ A +M
Sbjct: 515 PSSAMHVFKRM 525
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 192 KANEVTLVS---VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT--SLIDMYAKCGAI 246
+AN +T S +L C L L Q + M+ KGL P LI + G +
Sbjct: 19 EANPITRNSSSKLLVNCKTLKELKQ---LHCDMMKKGLLCHKPASNLNKLIASSVQIGTL 75
Query: 247 KE---ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
+ A F + + + + ++N +I G A G +++ L+ +M ++GI PD+ TF
Sbjct: 76 ESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPF 135
Query: 304 LLSACA 309
LLSAC+
Sbjct: 136 LLSACS 141
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 153/438 (34%), Positives = 249/438 (56%), Gaps = 12/438 (2%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYPF 68
LG ++ +V + + WN +I GY + K +++ ++ +M + P+ T
Sbjct: 156 LGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVS 215
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDL--FISNSLIHMYGSCGDIVYAREVFDGMPT 126
A L EL +H IA E DL + N+L+ MY CG + ARE+FD M
Sbjct: 216 TLSACAVLRNLELGKEIHDYIAS---ELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTV 272
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
K W SM+ GY CG+++ AR +FE P R++V W+A+I+GYV+ ++E + +F EM
Sbjct: 273 KNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEM 332
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ G K ++ +V++L CA GAL+QG+ + Y+ + + + + T+LI+MYAKCG I
Sbjct: 333 QIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCI 392
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+++ +F+G++ + D W ++I GLAM+G E+LELF MQ G+ PD+ITF+ +LS
Sbjct: 393 EKSFEIFNGLK--EKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLS 450
Query: 307 ACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPL---E 362
AC+H GLV E F S+ + P EHY C +D L RAG + EA E + ++P E
Sbjct: 451 ACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNE 510
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
+ G+LL+ C +G +D+ E + L +++ + L+++YA RW++ R R
Sbjct: 511 IIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVR 570
Query: 423 EAMETRGVKKYPGWSFVE 440
M+ G+KK PG+S +E
Sbjct: 571 NKMKDLGIKKVPGYSAIE 588
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/410 (27%), Positives = 198/410 (48%), Gaps = 63/410 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++FS S LG+ +Y+ ++ +++ +P +F +N +I+ + KS + +ISLF ++ GV
Sbjct: 46 LMAFSMDSSLGDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVW 105
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+ TYP++ K G + + VHA + KTG E D ++ NS + MY G + +V
Sbjct: 106 PDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQV 165
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
F+ MP + +VSWN M+ GY V+C ++EA+
Sbjct: 166 FEEMPDRDAVSWNIMISGY-------------------------------VRCKRFEEAV 194
Query: 181 VIFEEM-RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
++ M + K NE T+VS L ACA L L+ G+ + Y+ + L LT + +L+DM
Sbjct: 195 DVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASE-LDLTTIMGNALLDM 253
Query: 240 YAKCGAIKEALIVFHGV----------------------------EKHQS-DVLIWNAMI 270
Y KCG + A +F + E+ S D+++W AMI
Sbjct: 254 YCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMI 313
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
G +E++ LF EMQI G+ PD+ + LL+ CA G + + + + + +
Sbjct: 314 NGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIK 373
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
+ +++ ++ G + +++E + + T S S++ G +GK
Sbjct: 374 VDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWT-SIICGLAMNGK 422
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 165/501 (32%), Positives = 249/501 (49%), Gaps = 72/501 (14%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G I Y+ KV P +F WN +IRGYS +I ++ +M +GV+PD T P +
Sbjct: 116 IGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCV 175
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA + E+ VH QI + G+ESD+F+ N L+ +Y CG + AR VF+G+ +
Sbjct: 176 LKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNI 235
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNV-VSWSALID-------------------- 168
VSW SM+ GY + G A ++F M +RNV W AL+
Sbjct: 236 VSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGC 295
Query: 169 ------------------GYVKCGDYKEALVIFEEMR----------------------- 187
Y KCG A F++M
Sbjct: 296 VVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEA 355
Query: 188 --------DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
+ + +T+ S + ACA +G+LD + M Y+ + + T+LIDM
Sbjct: 356 VGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDM 415
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
+AKCG++ A VF DV++W+AMI G +HG +++++LF M+ G+ P+++
Sbjct: 416 FAKCGSVDLAREVFD--RTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDV 473
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
TF+GLL+AC H GLV E W F S+ G+ + +HYAC+VD L R+G + EAY+FI M
Sbjct: 474 TFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTM 533
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P+EP S+ G+LL C + + L E ++L L P + G YV LSN+YA + WD
Sbjct: 534 PIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVA 593
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R M +G+ K G+S +E
Sbjct: 594 KVRILMREKGLSKDLGYSLIE 614
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 146/299 (48%), Gaps = 19/299 (6%)
Query: 89 IAKTGYESDLFISNSLIH-MYGSCGDIVYAREVFDGMPTK-------MSVSWNSMLDGYA 140
I +G++ D F S+ L H ++ + ++A+ V G+ ++ SWN
Sbjct: 63 IPYSGFDFDSFFSSLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNASWN------- 115
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
GE+ AR+VF+ PE +V W+A+I GY + +A+ ++ M+ G + TL
Sbjct: 116 -IGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPC 174
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
VL AC+ + L+ G+ + + G + +Q L+ +YAKCG +++A IVF G++
Sbjct: 175 VLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDR- 233
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
+++ W +MI G +G E+L +F +M+ + PD I + +L A + +
Sbjct: 234 -NIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSI 292
Query: 321 FKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+ K G+ + + + ++ GQV A F QM + P M ++++G +G
Sbjct: 293 HGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEI-PNVMMWNAMISGYAKNG 350
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 96/377 (25%), Positives = 154/377 (40%), Gaps = 82/377 (21%)
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
KR L +HAQ+ +G F+ ++ + G+I YAR+VFD P WN+++
Sbjct: 84 KRHLN-QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIR 142
Query: 138 GYAK--------------------------------CGEMNMAR-------QVFELMPER 158
GY+ C + + Q+F L E
Sbjct: 143 GYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFES 202
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFE-------------------------------EMR 187
+V + L+ Y KCG ++A ++FE +MR
Sbjct: 203 DVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMR 262
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
K + + LVSVL A + L+QG+ + ++ GL L SL MYAKCG +
Sbjct: 263 QRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVM 322
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A F +E +V++WNAMI G A +G+ E++ LF EM I D IT + A
Sbjct: 323 VARSFFDQMEI--PNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILA 380
Query: 308 CAH-GGLVMEAW---YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
CA G L + W Y K+ + + + ++D ++ G V A E + L+
Sbjct: 381 CAQVGSLDLAKWMGDYINKTEYRNDVFVNT----ALIDMFAKCGSVDLARE-VFDRTLDK 435
Query: 364 TASMLGSLLTGCMNHGK 380
+ +++ G HG+
Sbjct: 436 DVVVWSAMIVGYGLHGR 452
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 132/297 (44%), Gaps = 35/297 (11%)
Query: 1 MLSFSAL-SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
++S +A+ + G + + + P + WN +I GY+K+ N+++ LF +M+ +
Sbjct: 308 LISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNI 367
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
D +T A ++ +LA + I KT Y +D+F++ +LI M+ CG + ARE
Sbjct: 368 RTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLARE 427
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD K V W++M+ GY G ++A
Sbjct: 428 VFDRTLDKDVVVWSAMIVGYGLHGRG-------------------------------QDA 456
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
+ +F M+ G N+VT V +L AC H G +++G + M G+ ++D+
Sbjct: 457 IDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYACVVDL 516
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
+ G + EA F + V +W A++G ++ V +L + Q+ + P
Sbjct: 517 LGRSGHLNEAYD-FITTMPIEPGVSVWGALLGACKIYRHV--TLGEYAAEQLFSLDP 570
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 157/468 (33%), Positives = 255/468 (54%), Gaps = 37/468 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A + +D + ++ + P +F +N + +G+ +P +S+ L+V+MLR VSP
Sbjct: 68 TACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSY 127
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
TY L KAS A R ++ A I K G+ + I +LI Y + G I AR+VFD M
Sbjct: 128 TYSSLVKASS-FASR-FGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEM 185
Query: 125 PTKMSVSW-------------------------------NSMLDGYAKCGEMNMARQVFE 153
P + ++W N +++GY G + A +F
Sbjct: 186 PERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFN 245
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
MP ++++SW+ +I GY + Y+EA+ +F +M + G +EVT+ +V+ ACAHLG L+
Sbjct: 246 QMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEI 305
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
G+ + Y + G L + + ++L+DMY+KCG+++ AL+VF + K ++ WN++I GL
Sbjct: 306 GKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPK--KNLFCWNSIIEGL 363
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPK 332
A HGF +E+L++F +M++ + P+ +TF+ + +AC H GLV E ++S+ +V
Sbjct: 364 AAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSN 423
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV 392
EHY MV S+AG + EA E I M EP A + G+LL GC H L +AEI KL+
Sbjct: 424 VEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLM 483
Query: 393 ELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY-PGWSFV 439
L+P + G Y L ++YA RW + R M G++K PG S +
Sbjct: 484 VLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSI 531
>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Brachypodium distachyon]
Length = 804
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 151/415 (36%), Positives = 239/415 (57%), Gaps = 7/415 (1%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I GY +S ++ LF +M+ + PD T+ L A +VH Q
Sbjct: 264 WNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFI 323
Query: 91 KTGY----ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
+ E+ L ++N+L+ +Y G I A ++FD M K VSWN++L GY + G ++
Sbjct: 324 RLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLD 383
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
A ++F+ MP ++ +SW ++ GYV G ++AL +F +MR K + T + AC
Sbjct: 384 NAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACG 443
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
LGAL G+ + +++ G + +L+ MYA+CGA+K+A +VF + D + W
Sbjct: 444 ELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVF--LVMPNVDSVSW 501
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
NAMI L HG +E+LELF +M GI PD I+FL +L+AC H GLV + + +F+S+ +
Sbjct: 502 NAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMER 561
Query: 327 R-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
G+ P +HYA ++D L RAG++ EA + I MP EPT ++ ++L+GC +G ++L
Sbjct: 562 DFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGA 621
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+L ++ P+HDG Y+ LSN Y+ RW +A R+ M RGVKK PG S++E
Sbjct: 622 YAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIE 676
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 175/372 (47%), Gaps = 24/372 (6%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVS--PDHLTYPFLAKASGRLAKRELAVA----V 85
N +I ++++ ++S+F +L + S PD ++ L A G++ +LAV+ +
Sbjct: 126 NAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQM--HDLAVSHCTQL 183
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSC---GDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
H + K G + L +SN+LI +Y C G AR+V D MP K ++W +++ G+ +
Sbjct: 184 HCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRK 243
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
G+++ AR FE + V W+A+I GYV+ G EA +F M +E T S+L
Sbjct: 244 GDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLL 303
Query: 203 CACAHLGALDQGR----MMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
ACA+ G G+ +R D LP+ +L+ +Y+K G I A +F +
Sbjct: 304 SACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMT- 362
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
DV+ WN ++ G G + + +F EM E++++ ++S HGGL +A
Sbjct: 363 -LKDVVSWNTILSGYIESGCLDNAARIFKEMPY----KSELSWMVMVSGYVHGGLAEDAL 417
Query: 319 YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF---ICQMPLEPTASMLGSLLTGC 375
F + + P YA V A G + + + Q E + S +LLT
Sbjct: 418 KLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMY 477
Query: 376 MNHGKLDLAEIV 387
G + A +V
Sbjct: 478 ARCGAVKDARLV 489
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 135/321 (42%), Gaps = 36/321 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + ++ + W ++ GY ++ LF +M V P TY
Sbjct: 380 GCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAV 439
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G L + +HA + + G+E+ N+L+ MY CG + AR VF MP SV
Sbjct: 440 AACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSV 499
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+M+ + G +EAL +F++M G
Sbjct: 500 SWNAMISALGQHGHG-------------------------------REALELFDQMVAQG 528
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ ++ +++L AC H G +D G M D G+S LID+ + G I EA
Sbjct: 529 IYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEA 588
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD-EITFLGLLSAC 308
+ + + IW A++ G ++G ++ L + Q+ + P+ + T++ L +
Sbjct: 589 RDLIKTMPFEPTPA-IWEAILSGCRINGDME--LGAYAADQLFKMVPEHDGTYILLSNTY 645
Query: 309 AHGGLVMEAWYFFKSLGKRGM 329
+ G ++A K + RG+
Sbjct: 646 SAAGRWVDAARVRKLMRDRGV 666
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV- 292
TSL+ YA G ++++ F V + D ++ NAMI A ++ +F +
Sbjct: 93 TSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASD 152
Query: 293 -GITPDEITFLGLLSA 307
+ PD+ +F LLSA
Sbjct: 153 DSLRPDDYSFTSLLSA 168
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 170/445 (38%), Positives = 248/445 (55%), Gaps = 39/445 (8%)
Query: 2 LSFSAL----SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA 57
+SF+AL + G +D + ++ + WN +I GY++S ++++ F +M RA
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258
Query: 58 GVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYA 117
V+P+ T + A + EL V + I G S+L + N+LI MY
Sbjct: 259 NVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMY--------- 309
Query: 118 REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
+KCG+++ AR +FE + E++++SW+ +I GY YK
Sbjct: 310 ----------------------SKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYK 347
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT-LPLQTSL 236
EAL +F +M+ + N+VT VS+L ACA+LGALD G+ + Y+ K L LT L TSL
Sbjct: 348 EALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSL 407
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
IDMYAKCG I+ A VF G++ + WNAMI GLAMHG +LELF +M+ G P
Sbjct: 408 IDMYAKCGNIEAAKQVFAGMKP--KSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEP 465
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEF 355
D+ITF+G+LSAC+H GLV F S+ + + PK +HY CM+D L RAG EA
Sbjct: 466 DDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEAL 525
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
+ M ++P ++ GSLL C HG ++L E K L EL+P++ G YV LSN+YA RW
Sbjct: 526 MKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRW 585
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
D+ R + +G+KK PG S +E
Sbjct: 586 DDVARIRTKLNDKGMKKVPGCSSIE 610
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/408 (33%), Positives = 232/408 (56%), Gaps = 7/408 (1%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ F A+S GN+ Y+ + + P F WNT+IRG S S +P +I +V+ML GV
Sbjct: 70 LIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVE 129
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ T+PFL K+ ++ + +H + K G ESD F+ SLI+MY G++ YA V
Sbjct: 130 PNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELV 189
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
F + +VS+ +++ GY G ++ AR++FE +P R+ VSW+A+I GY + G ++EAL
Sbjct: 190 FSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEAL 249
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
F+EM+ NE T+V+VL ACA G+L+ G + ++ D GL L L +LIDMY
Sbjct: 250 AFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMY 309
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
+KCG + +A +F G+ + D++ WN MIGG + KE+L LF +MQ + P+++T
Sbjct: 310 SKCGDLDKARDLFEGI--CEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVT 367
Query: 301 FLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+ +L ACA+ G L + W K + + + ++D ++ G + A + M
Sbjct: 368 FVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGM 427
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRYVGL 405
+ S ++++G HG ++A + +++ + +PD D +VG+
Sbjct: 428 KPKSLGSW-NAMISGLAMHGHANMALELFRQMRDEGFEPD-DITFVGV 473
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 92/391 (23%), Positives = 149/391 (38%), Gaps = 107/391 (27%)
Query: 85 VHAQIAKTGYESDLFISNSLIHM--YGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+H+QI KTG + F + LI G++ YA +F+ + WN+M+ G
Sbjct: 51 IHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRG---- 106
Query: 143 GEMNMARQVFELMPERNVVSWSAL--IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
N +S S + ID YV+ M G + N T
Sbjct: 107 ----------------NSLSSSPVGAIDFYVR-------------MLLCGVEPNSYTFPF 137
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
+L +CA +GA +G+ + +++ GL + TSLI+MYA+ G + A +VF
Sbjct: 138 LLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRD 197
Query: 261 S-----------------------------DVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
+ D + WNAMI G A G +E+L F EM+
Sbjct: 198 AVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKR 257
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTE 351
+ P+E T + +LSACA G + + + G+ ++D S+ G + +
Sbjct: 258 ANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDK 317
Query: 352 A---YEFIC-------------------------------QMPLEPTASMLGSLLTGCMN 377
A +E IC Q +EP S+L C
Sbjct: 318 ARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAY 377
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNV 408
G LDL + + + D +++GL+N
Sbjct: 378 LGALDLGKWIHAYI-------DKKFLGLTNT 401
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 159/423 (37%), Positives = 240/423 (56%), Gaps = 34/423 (8%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
+ + P I +NT+ RGY+++ P ++ +LF ++L +G+ PD T+P L KA
Sbjct: 77 LFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKA 136
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
E +H K G ++++ +LI+MY +C
Sbjct: 137 LEEGRQLHCLAIKLGLSENVYVCPTLINMYTACN-------------------------- 170
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
EM+ AR+VF+ + E VV+++A+I GY + EAL +F E++ K +VT+
Sbjct: 171 -----EMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTM 225
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
+SVL +CA LGALD G+ M Y+ G + + + T+LIDMYAKCG++ +A+ VF +
Sbjct: 226 LSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAV 285
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
D W+AMI A+HG +++ LF EM+ G PDEITFLGLL AC+H GLV E +
Sbjct: 286 R--DTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGF 343
Query: 319 -YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
YF+ K G++P +HY CMVD L RAG++ EAYEFI +P+ PT + +LL+ C +
Sbjct: 344 EYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGS 403
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
HG ++L + V +++ EL H G Y+ LSN+ A RW++ R+ M RGV K PG S
Sbjct: 404 HGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCS 463
Query: 438 FVE 440
VE
Sbjct: 464 SVE 466
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 2/149 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D + V +++ W+ +I Y+ + K++SLF +M +AG PD +T+ L
Sbjct: 271 GSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLL 330
Query: 71 KASGRLAKRELAVA-VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A E + K G + ++ + G G + A E G+P + +
Sbjct: 331 YACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPT 390
Query: 130 -VSWNSMLDGYAKCGEMNMARQVFELMPE 157
+ W ++L G + + ++V E + E
Sbjct: 391 PILWRTLLSACGSHGNVELGKRVIEQIFE 419
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 164/472 (34%), Positives = 254/472 (53%), Gaps = 46/472 (9%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPF 68
LG++ S + ++ WN++I Y + + +++I F ++L + PD T+P
Sbjct: 64 LGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPP 123
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+ KA G L +H K G++ ++F++ SLIHMY G AR +FD MP +
Sbjct: 124 VLKACGTLVDGR---KIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRD 180
Query: 129 SVSWNSMLDG---------------------------------------YAKCGEMNMAR 149
SWN+M+ G YAK G ++ A
Sbjct: 181 MGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAH 240
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK-ANEVTLVSVLCACAHL 208
+VFE++P ++V+SW+ LI GY + G EA+ +++ M + N+ T VS+L A AH+
Sbjct: 241 KVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHV 300
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
GAL QG + +I L L + + T LID+Y KCG + +A+ +F+ V + S + WNA
Sbjct: 301 GALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS--VTWNA 358
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328
+I +HG +++L+LF EM G+ PD +TF+ LLSAC+H G V E + F+ + + G
Sbjct: 359 IISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYG 418
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
+ P +HY CMVD L RAG + AY+FI MPL+P AS+ G+LL C HG ++L +
Sbjct: 419 IKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFAS 478
Query: 389 KKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+L E+ + G YV LSN+YA +W+ R RG+KK PGWS +E
Sbjct: 479 DRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIE 530
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 171/385 (44%), Gaps = 54/385 (14%)
Query: 58 GVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYA 117
G + + + FL +S K A +HA + G +FIS L+++Y + GD+ +
Sbjct: 14 GNQNEEIDFNFLFDSS---TKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLS 70
Query: 118 REVFDGMPTKMSVSWNSMLDGYAK---------------------------------CGE 144
R FD +P K +WNSM+ Y CG
Sbjct: 71 RCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGT 130
Query: 145 MNMARQV----FELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGSKANEVT- 197
+ R++ F+L + NV ++LI Y + G A +F++M RD+GS ++
Sbjct: 131 LVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISG 190
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
L+ A L LD+ R+ M + LP+ +DMYAK G + A VF +
Sbjct: 191 LIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPV---FVDMYAKLGLLDSAHKVFEIIP 247
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACAHGGLVME 316
DV+ WN +I G A +G E++E++ M+ I P++ T++ +L A AH G + +
Sbjct: 248 --VKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQ 305
Query: 317 AWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
+ K + C++D + G++ +A Q+P E +S+ + + C
Sbjct: 306 GMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE--SSVTWNAIISCH 363
Query: 377 N-HGKLDLA-EIVGKKLVE-LQPDH 398
HG + ++ G+ L E ++PDH
Sbjct: 364 GIHGHAEKTLKLFGEMLDEGVKPDH 388
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 159/445 (35%), Positives = 257/445 (57%), Gaps = 11/445 (2%)
Query: 5 SALSYLGNIDYSCKVLSHLSN----PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+A + G +D + ++ S + + P + WN +I G++ S ++++ +F+ M G
Sbjct: 188 AAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFE 247
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD T + A G L + + +H + K G SD +S++LI MYG C +V
Sbjct: 248 PDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQV 307
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER----NVVSWSALIDGYVKCGDY 176
FD M S N+ + G ++ G++ + ++F + ++ NVVSW+++I + G
Sbjct: 308 FDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRD 367
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
EAL +F EM+ G K N VT+ +L AC ++ AL G+ + + +G+S + + ++L
Sbjct: 368 MEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSAL 427
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
IDMYAKCG I+ + I F G+ +++ WNA+I G AMHG KE++E+F MQ G P
Sbjct: 428 IDMYAKCGRIQASRICFDGIPT--KNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKP 485
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
D I+F +LSAC+ GL E Y+F S+ K G+ + EHYACMV LSRAG++ +AY
Sbjct: 486 DIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAM 545
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
I +MP+ P A + G+LL+ C H + L E+ +KL EL+P + G Y+ LSN+YA W
Sbjct: 546 IRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMW 605
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
+E R+ M+ +G++K PG S++E
Sbjct: 606 NEVNRVRDMMKNKGLRKNPGCSWIE 630
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 179/328 (54%), Gaps = 6/328 (1%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
VL + P +F ++T+I +SK + ++S F +ML G+ PD+ P KA L+
Sbjct: 70 VLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSA 129
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
+ A VH + +G++SD F+ +SL+HMY C I A VFD M VSW++++
Sbjct: 130 LKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAA 189
Query: 139 YAKCGEMNMARQVFELMPER----NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
YA+ G ++ A+++F M + N++SW+ +I G+ G Y EA+++F +M G + +
Sbjct: 190 YARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPD 249
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
T+ SVL A L L G ++ Y+I +GL + ++LIDMY KC E VF
Sbjct: 250 GTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFD 309
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
++ DV NA I GL+ +G V+ SL LF +++ G+ + +++ +++ C+ G
Sbjct: 310 QMD--HMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRD 367
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDA 342
MEA F+ + G+ P S C++ A
Sbjct: 368 MEALELFREMQIAGVKPNSVTIPCLLPA 395
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 93/184 (50%), Gaps = 2/184 (1%)
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
A V +L+PE NV S+S LI + K + AL F +M G + L S + ACA
Sbjct: 67 ATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAG 126
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
L AL R + G +Q+SL+ MY KC I++A VF + + DV+ W+
Sbjct: 127 LSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM--FEPDVVSWS 184
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327
A++ A G V E+ LF+EM G+ P+ I++ G+++ H GL EA F + R
Sbjct: 185 ALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLR 244
Query: 328 GMVP 331
G P
Sbjct: 245 GFEP 248
>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 173/439 (39%), Positives = 242/439 (55%), Gaps = 43/439 (9%)
Query: 3 SFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD 62
+ S YL + + S +V + P +F WN +I+ ++ P K+I L+ +M+ A P+
Sbjct: 99 NVSTNRYL-SFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPN 157
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
TYP + KA V VHA + K G D I +S I MY S G +V AR + D
Sbjct: 158 KYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILD 217
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
K GE++ MP+R G + EAL I
Sbjct: 218 D-----------------KGGEVDAV-----CMPDRK--------------GCFMEALEI 241
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F +M+ + + L SVL ACA+LGALDQGR + Y + L L TSL+DMYAK
Sbjct: 242 FHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAK 301
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG I A VF + +V WNAMIGGLAMHG +++++LF++M I P+EITF+
Sbjct: 302 CGRIDLAWEVFEKMS--NKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDI---NPNEITFV 356
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
G+L+ACAHGGLV + F S+ K G+ P+ EHY C+VD L RAG +TEA + + +P
Sbjct: 357 GVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPT 416
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
EPT ++ G+LL C HG ++L E VGK L+EL+P + GRY LSN+YA RW+E
Sbjct: 417 EPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEV 476
Query: 422 REAMETRGVKKYPGWSFVE 440
R+ M+ RG+K PG S ++
Sbjct: 477 RKLMKERGIKTTPGTSIID 495
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 146/325 (44%), Gaps = 36/325 (11%)
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
HA I +TG+ D +I+ SL+ Y + + T +S+ S L
Sbjct: 75 HALILRTGHLQDSYIAGSLVKSYAN-------------VSTNRYLSFESSL--------- 112
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
+VF+ + + NV W+ +I ++ + +A++++ EM + N+ T +VL AC
Sbjct: 113 ----RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKAC 168
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
+ G + +G + +++ GL + +S I MYA G + EA + V +
Sbjct: 169 SDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCM 228
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
+ G E+LE+F +MQ I P + +LSACA+ G + + +
Sbjct: 229 PDRK-------GCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAK 281
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
+ + +VD ++ G++ A+E +M + +S +++ G HG+ + A
Sbjct: 282 RNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSW-NAMIGGLAMHGRAEDAI 340
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYA 410
+ K+ ++ P+ + +VG+ N A
Sbjct: 341 DLFSKM-DINPN-EITFVGVLNACA 363
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 116/262 (44%), Gaps = 31/262 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL- 69
G ID + +V +SN + WN +I G + +I LF KM ++P+ +T+ +
Sbjct: 303 GRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVL 359
Query: 70 -AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A A G L ++ L + ++ + G E + ++ + G G + A +V +PT+
Sbjct: 360 NACAHGGLVQKGLTI-FNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEP 418
Query: 129 SVS-WNSMLDGYAKCGEMNMARQV----FELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+ + W ++L K G + + +V EL P+ N ++ L + Y K G ++E +
Sbjct: 419 TPAVWGALLGACRKHGNVELGERVGKILLELEPQ-NSGRYTLLSNIYAKAGRWEEVGEVR 477
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGR-MMLRYMIDKGLSLTLPLQTSLIDMYAK 242
+ M++ G K T + +D GR + +++I G + D+Y
Sbjct: 478 KLMKERGIKTTPGTSI-----------IDLGRGEVHKFIIGDG------SHPQVKDIYQM 520
Query: 243 CGAIKEALIVFHGVEKHQSDVL 264
+KE L G E S VL
Sbjct: 521 LDKVKERL-QMEGYEPDPSQVL 541
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 164/454 (36%), Positives = 246/454 (54%), Gaps = 47/454 (10%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++ +ALS ++DY+ +V + +P ++ WNT+IR Y+ S NP++S+ +F++ML
Sbjct: 73 LITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPD 132
Query: 61 -PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
PD T+PFL KA+ L + A H + K SD+FI NSLIH Y CG++
Sbjct: 133 FPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYR 192
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VF P + VSWNSM+ + + G PE EA
Sbjct: 193 VFVNXPRRDVVSWNSMITAFVQGG-----------CPE--------------------EA 221
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F+EM K N +T+V VL ACA + GR + Y+ + +L L +++DM
Sbjct: 222 LELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDM 281
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMI------------GGLAMHGFVKESLELFT 287
Y KCG++++A +F + + D++ W M+ GLAMHG K+++ LF+
Sbjct: 282 YTKCGSVEDAKRLFDKMP--EKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFS 339
Query: 288 EMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRA 346
+MQ + P+ +TF +L AC+H GLV E FF + G++P +HYACMVD L RA
Sbjct: 340 KMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRA 399
Query: 347 GQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLS 406
G + EA E I +MP+ P AS+ G+LL C H + LAE +L+EL+P + G YV LS
Sbjct: 400 GLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLS 459
Query: 407 NVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
N+YA +WD R+ M G+KK PG S +E
Sbjct: 460 NIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIE 493
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 155/431 (35%), Positives = 241/431 (55%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ID + K+ + + +NT++ Y + + +++ +ML+ G PD +T
Sbjct: 289 GAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAV 348
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L H + + G E + N++I+MY CG A VFD M K V
Sbjct: 349 SACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRV 408
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS++ G+ + G+M A ++F MP+ ++VSW+ +I V+ +KEA+ +F M+ G
Sbjct: 409 SWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEG 468
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
A++VT+V V AC +LGALD + + Y+ K + + L T+L+DM+A+CG + A+
Sbjct: 469 ITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAM 528
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF+ + K DV W A IG +AM G ++ELF EM GI PD + F+ LL+A +H
Sbjct: 529 QVFNKMVKR--DVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSH 586
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GGLV + W+ F+S+ G+ P++ HY CMVD L RAG ++EA I M +EP + G
Sbjct: 587 GGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWG 646
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL C H +D+A +++ EL P+ G +V LSN+YA RWD+ R ++ +G
Sbjct: 647 SLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKG 706
Query: 430 VKKYPGWSFVE 440
K PG S +E
Sbjct: 707 AHKMPGSSSIE 717
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 149/281 (53%), Gaps = 33/281 (11%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
+ ++++IRG+S K+I +F +++ G PD+ T+PF+ A + A VH
Sbjct: 105 YMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGA 164
Query: 89 IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
I K G+E D+F+ NSLIH YG +CGE++
Sbjct: 165 IVKMGFERDMFVENSLIHFYG-------------------------------ECGEIDCM 193
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
R+VF+ M ERNVVSW++LI GY K G YKEA+ +F EM +VG + N VT+V V+ ACA L
Sbjct: 194 RRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKL 253
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
L G + + + L + + +L+DMY KCGAI +A +F E +++++N
Sbjct: 254 QDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFD--ECVDKNLVLYNT 311
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
++ G +E L + EM G PD IT L +SAC+
Sbjct: 312 IMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACS 352
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 166/378 (43%), Gaps = 60/378 (15%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ID +V +S + W ++I GY+K +++SLF +M+ G+ P+ +T +
Sbjct: 188 GEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVI 247
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A +L +L V I + E + + N+L+ MY CG I AR++FD K V
Sbjct: 248 SACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLV 307
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+N+++ Y + G +AR+V L + EM G
Sbjct: 308 LYNTIMSNYVRQG---LAREV----------------------------LAVLGEMLKHG 336
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ + +T++S + AC+ L + G+ Y++ GL + ++I+MY KCG + A
Sbjct: 337 PRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMAC 396
Query: 251 IVFH---------------GVEKH--------------QSDVLIWNAMIGGLAMHGFVKE 281
VF G ++ SD++ WN MIG L KE
Sbjct: 397 RVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKE 456
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
++ELF MQ GIT D++T +G+ SAC + G + A + + K+ + +VD
Sbjct: 457 AIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVD 516
Query: 342 ALSRAGQVTEAYEFICQM 359
+R G A + +M
Sbjct: 517 MFARCGDPQSAMQVFNKM 534
>gi|224133640|ref|XP_002327644.1| predicted protein [Populus trichocarpa]
gi|222836729|gb|EEE75122.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 159/446 (35%), Positives = 253/446 (56%), Gaps = 19/446 (4%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
G+IDY+ + +++P F N V++ YS S PNK++ + +ML++G P+ T+ L
Sbjct: 94 FGDIDYTIFIFKFIASPGTFVVNNVVKAYSLSSEPNKALVFYFEMLKSGFCPNSYTFVSL 153
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
++ +L H Q K G + L + NSLIH YG CGD+ A++VFD M +
Sbjct: 154 FGCCAKVGCAKLGKKYHGQAVKNGVDRILPVENSLIHCYGCCGDMGLAKKVFDEMSHRDL 213
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSWNS++DGYA GE+ +A +FE+MPERNVVSW+ LI GY+K + L++F +M +
Sbjct: 214 VSWNSIIDGYATLGELGIAHGLFEVMPERNVVSWNILISGYLKGNNPGCVLMLFRKMMND 273
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G + N+ T+VSVL AC L +GR + +++ K S+ + +T+LIDMY +C ++ A
Sbjct: 274 GMRGNDSTIVSVLSACGRSARLREGRSVHGFIVKKFSSMNVIHETTLIDMYNRCHKVEMA 333
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM-------QIVGITPDEITFL 302
+F V + ++ WNAMI G +HG + LELF +M + + PDE+TF+
Sbjct: 334 RRIFDKVVRR--NLGCWNAMILGHCLHGNPDDGLELFKDMVDRAGLGKRDSVHPDEVTFI 391
Query: 303 GLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC---- 357
G+L ACA GL+ E FF + G+ P H+ CM + +RAG + EA + +
Sbjct: 392 GVLCACARAGLLTEGKNFFSQMIYNHGLKPNFAHFWCMANLYARAGLIQEAEDILRTTQE 451
Query: 358 ---QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414
MPLE + + +LL C G + L E + L++++P + Y L NVYA+ R
Sbjct: 452 EEEDMPLE--SLVWANLLNSCRFQGNVALGERIANSLIDMEPWNILHYRLLLNVYAVGGR 509
Query: 415 WDEARTTREAMETRGVKKYPGWSFVE 440
WD+ ++ ++T+ + PG + V+
Sbjct: 510 WDDVAMVKDLVKTKMKGRTPGCNLVD 535
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 6/218 (2%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
+L +A G+++ +F+ + + ++ Y + +ALV + EM G N
Sbjct: 87 LLKHFADFGDIDYTIFIFKFIASPGTFVVNNVVKAYSLSSEPNKALVFYFEMLKSGFCPN 146
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
T VS+ CA +G G+ + G+ LP++ SLI Y CG + A VF
Sbjct: 147 SYTFVSLFGCCAKVGCAKLGKKYHGQAVKNGVDRILPVENSLIHCYGCCGDMGLAKKVFD 206
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
E D++ WN++I G A G + + LF M + I G L G ++
Sbjct: 207 --EMSHRDLVSWNSIIDGYATLGELGIAHGLFEVMPERNVVSWNILISGYLKGNNPGCVL 264
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352
M F+ + GM ++ A R+ ++ E
Sbjct: 265 M----LFRKMMNDGMRGNDSTIVSVLSACGRSARLREG 298
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 168/460 (36%), Positives = 255/460 (55%), Gaps = 22/460 (4%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPN-KSISLFVKML-RAG 58
+L SA S +I Y+ V L F WNTVIR +++++ + ++ +F +ML A
Sbjct: 53 ILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEAT 112
Query: 59 VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
V P+ T+P + KA +A+ VH + K G D F+ +L+ MY CG + A
Sbjct: 113 VEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDAN 172
Query: 119 EVF----DGMPTKMS------------VSWNSMLDGYAKCGEMNMARQVFELMPERNVVS 162
+F +G+ + V N M+DGYA+ G + AR++F+ M +R+VVS
Sbjct: 173 VLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVS 232
Query: 163 WSALIDGYVKCGDYKEALVIFEEMRDVGSK-ANEVTLVSVLCACAHLGALDQGRMMLRYM 221
W+ +I GY + G YKEA+ IF M +G N VTLVSVL A + LG L+ G+ + Y
Sbjct: 233 WNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYA 292
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
+ + L ++L+DMYAKCG+I++A+ VF + Q++V+ WNA+IGGLAMHG +
Sbjct: 293 EKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLP--QNNVITWNAVIGGLAMHGKAND 350
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMV 340
+ M+ GI+P ++T++ +LSAC+H GLV E FF + G+ PK EHY CMV
Sbjct: 351 IFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMV 410
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400
D L RAG + EA E I MP++P + +LL H + + + L+++ P G
Sbjct: 411 DLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSG 470
Query: 401 RYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
YV LSN+YA WD R M+ ++K PG S++E
Sbjct: 471 AYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIE 510
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 168/437 (38%), Positives = 243/437 (55%), Gaps = 40/437 (9%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + K+ + + WN +I GY+++ N K++ LF +M++ V PD T +
Sbjct: 155 GYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVV 214
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + EL VH+ I G+ S+L I N+LI
Sbjct: 215 SACAQSGSIELGRQVHSWINDHGFGSNLKIVNALI------------------------- 249
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
D Y+KCGE+ A ++ E + ++V+SW+ LI GY YKEAL++F+EM G
Sbjct: 250 ------DLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 303
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTL-----PLQTSLIDMYAKCGA 245
N+VT++S+L ACAHLGA+D GR + Y IDK L + L+TSLIDMYAKCG
Sbjct: 304 ETPNDVTMLSILPACAHLGAIDIGRWIHVY-IDKKLKGVVVTNASSLRTSLIDMYAKCGD 362
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
I A V ++S + WNAMI G AMHG + ++F+ M+ GI PD+ITF+GLL
Sbjct: 363 IDAAPQVSDSSAFNRS-LSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLL 421
Query: 306 SACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
SAC+H G++ F+S+ + + PK EHY CM+D L +G EA E I MP+EP
Sbjct: 422 SACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPD 481
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
+ SLL C HG L+L E KKL++++P++ G YV LSN+YA +W+E R
Sbjct: 482 GVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTL 541
Query: 425 METRGV-KKYPGWSFVE 440
+ +G+ KK PG S +E
Sbjct: 542 LNDKGMKKKVPGCSSIE 558
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 224/412 (54%), Gaps = 10/412 (2%)
Query: 1 MLSFSALS-YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
+L F LS + + Y+ V + P WN + RG++ S +P ++ L+V M+ G+
Sbjct: 12 LLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGL 71
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T+PFL K+ + + +H + K G++ DL++ SLI MY G + A++
Sbjct: 72 LPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQK 131
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD + VS+ +++ GYA G + A+++F+ +P ++VVSW+A+I GY + G+YK+A
Sbjct: 132 VFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKA 191
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F+EM K +E T+ +V+ ACA G+++ GR + ++ D G L + +LID+
Sbjct: 192 LELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDL 251
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y+KCG ++ A + G+ DV+ WN +IGG KE+L LF EM G TP+++
Sbjct: 252 YSKCGEVETACELLEGLS--NKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 309
Query: 300 TFLGLLSACAH-GGLVMEAW---YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
T L +L ACAH G + + W Y K L + S ++D ++ G + A +
Sbjct: 310 TMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQV 369
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRYVGL 405
+ S +++ G HG+ + A + ++ + ++PD D +VGL
Sbjct: 370 SDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPD-DITFVGL 420
>gi|296082436|emb|CBI21441.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 290 bits (743), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 154/422 (36%), Positives = 239/422 (56%), Gaps = 9/422 (2%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
+ LS P +F W ++ YS++ ++ + + +M GV PD +P + +A G+L
Sbjct: 419 LFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLW 478
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
E+ + VH + G E DL + NSLI MY GD+ R VFD M + +SWNSM+ G
Sbjct: 479 LEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISG 538
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
Y C + A VFELM +VV+W+A+I G+V AL F +M+ G N++T+
Sbjct: 539 Y--CKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITI 596
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
+VL AC L G+ + Y+ S +P+ +LI MY+KCG I A +F +
Sbjct: 597 STVLPACD----LKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMIS 652
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
D++ WN MIGG MHG + +L+L +M + P+ +TF LSAC+H GLV E
Sbjct: 653 R--DLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALSACSHSGLVDEGM 710
Query: 319 YFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
F ++ + G P EH++C+VD L+RA ++ +A FI +MPL+P+ + +LL C
Sbjct: 711 ELFHTMTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFIEKMPLKPSKHIWSALLAACRA 770
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
+ +A++ ++L +L+P+H G YV LSN+YA RWD+A R+ ME RG+ K G+S
Sbjct: 771 QQNVSVAKLAAEQLFQLEPEHAGNYVTLSNIYARAGRWDDAVAVRKLMEDRGLVKPSGYS 830
Query: 438 FV 439
++
Sbjct: 831 WI 832
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 135/327 (41%), Gaps = 40/327 (12%)
Query: 9 YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPF 68
Y I + V + + WN +I G+ + + ++ F KM R+G+ + +T
Sbjct: 539 YCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITIST 598
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+ A + ++ VHA I K + S + + N+LIHMY CG I A +F M ++
Sbjct: 599 VLPACDLKSGKQ----VHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRD 654
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
VSWN+M+ G+ G A Q+ M +V
Sbjct: 655 LVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVC--------------------------- 687
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIK 247
N VT S L AC+H G +D+G + M D G + + + ++D+ A+ ++
Sbjct: 688 ----PNSVTFTSALSACSHSGLVDEGMELFHTMTRDFGFTPGMEHFSCVVDLLARADRLE 743
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI-TFLGLLS 306
+A+ + S IW+A++ V S+ Q+ + P+ ++ L +
Sbjct: 744 DAVGFIEKMPLKPSK-HIWSALLAACRAQQNV--SVAKLAAEQLFQLEPEHAGNYVTLSN 800
Query: 307 ACAHGGLVMEAWYFFKSLGKRGMVPKS 333
A G +A K + RG+V S
Sbjct: 801 IYARAGRWDDAVAVRKLMEDRGLVKPS 827
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 31/190 (16%)
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
A+ +F+ + + NV +W+A++ Y + G E + + EM+ G ++ V AC
Sbjct: 416 AQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQ 475
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK------------------------- 242
L L+ G + + ++ G L + SLIDMY+K
Sbjct: 476 LLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSM 535
Query: 243 ----CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
C I++AL VF +++ DV+ WNAMI G +LE F++MQ GI ++
Sbjct: 536 ISGYCKRIQDALNVFELMDRF--DVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQ 593
Query: 299 ITFLGLLSAC 308
IT +L AC
Sbjct: 594 ITISTVLPAC 603
>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
Length = 493
Score = 290 bits (742), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 153/415 (36%), Positives = 232/415 (55%), Gaps = 39/415 (9%)
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISN------------------ 102
PDHL+ F RL +A VH+ + G+ D+++ N
Sbjct: 69 PDHLSLSFSLHPCSRLPSHPVASVVHSLAVRLGHARDVYVVNAAASAYFAAADVASAERL 128
Query: 103 ---------------SLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
+++ + + GD+ AR FD MP K VSWN+ML YA+ G +
Sbjct: 129 FSEASRDVADVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYARAGMLPK 188
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
AR++F+ MP RN +W ++I G ++ +EAL +F +M G NE LVS + AC
Sbjct: 189 ARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVASGVVPNEPALVSTVSACTQ 248
Query: 208 LGALDQGRMMLRYMIDKGL--SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
L ++ G + Y ++ L +++ L T+++DMY KCG+I++A+ VF + ++
Sbjct: 249 LRWMEHGTWVHGYA-ERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVR--NIYS 305
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA-WYFFKSL 324
WN+MI GLAM+G +++L LF +MQ+ G+ P++ITF+GLLSAC+H GLV E W F+K +
Sbjct: 306 WNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMV 365
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
G+ P EHY MVD L R+G V EA +F+ MP+EP + G+L C HG+++L
Sbjct: 366 NHFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWGALAGACKIHGEVELG 425
Query: 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
E V KKL+EL+P H RY+ LSN+YA RWD+ R ++ R V K G + V
Sbjct: 426 EEVAKKLIELEPQHGSRYILLSNIYATSNRWDDMANVRRILKDRKVPKGTGNAIV 480
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 126/282 (44%), Gaps = 40/282 (14%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
A + G + + K+ + + W ++I G +S + +++ +F M+ +GV P+
Sbjct: 177 LGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVASGVVPNE 236
Query: 64 LTYPFLAKASGRLAKRELAVAVH--AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121
A +L E VH A+ G S + ++ +++ MYG CG I A VF
Sbjct: 237 PALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAV-LATAIVDMYGKCGSIRDAVRVF 295
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
MP + SWNSM+ G A MN G ++AL
Sbjct: 296 AAMPVRNIYSWNSMIAGLA----MN---------------------------GSERQALS 324
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL-IDMY 240
+F +M+ G + N++T + +L AC+H G +D+GR + M++ +P L +D+
Sbjct: 325 LFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLL 384
Query: 241 AKCGAIKEALIVFHG--VEKHQSDVLIWNAMIGGLAMHGFVK 280
+ G ++EA+ VE H +W A+ G +HG V+
Sbjct: 385 GRSGHVREAVDFVKSMPVEPHPG---LWGALAGACKIHGEVE 423
>gi|357511223|ref|XP_003625900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500915|gb|AES82118.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 467
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 163/431 (37%), Positives = 243/431 (56%), Gaps = 36/431 (8%)
Query: 13 IDYSCKVLSHL-SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
++Y + +HL P +F +N++IR +S S PN +SL+ M + + P++ T+PFL K
Sbjct: 58 LNYVSPLFTHLIPKPHVFIFNSLIRAFSHSHIPNTPLSLYSHMHKNSILPNNFTFPFLFK 117
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
+ + V+ + K GY +D++++NSL
Sbjct: 118 SLSDSHDFVQSQCVYTHVIKLGYVNDIYVNNSL--------------------------- 150
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
LD YA G + + RQ+F+ MP+R+VVSW+ +I GY G Y +AL++FE+M+ G
Sbjct: 151 ----LDVYASYGCLELCRQLFDEMPQRDVVSWTVMIMGYRNGGKYNDALLVFEQMQYGGV 206
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
N VT+V+ L ACA A++ G + + G L + L T+LIDMY KCG ++E L
Sbjct: 207 VPNRVTMVNALSACASSCAIEMGVWIDDMVRRNGWELDVILGTALIDMYVKCGRVEEGLK 266
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF + + +V N +I GLA+ V+E+L F M++ G+ DE+T + +LSAC+H
Sbjct: 267 VF--CDMKEKNVFTLNVVIKGLALAKSVEEALLWFNRMELDGVRADEVTLVTVLSACSHS 324
Query: 312 GLVMEAWYFFKSL--GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV + + F L GK G +P +HYACMVD L+RAGQ+ EA++ I MP EPTA+M G
Sbjct: 325 GLVEKGRFIFSMLVDGKYGFLPNVKHYACMVDLLARAGQLQEAFDIIKCMPFEPTAAMWG 384
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL G + L+ +E KLVEL+P + YV LSN+YA RW + R M+ RG
Sbjct: 385 SLLLGSKSRDDLEFSEFAATKLVELEPYNTAYYVQLSNLYAEAGRWSDVERIRGMMKERG 444
Query: 430 VKKYPGWSFVE 440
+ K G S VE
Sbjct: 445 LTKDLGCSSVE 455
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 129/300 (43%), Gaps = 40/300 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ ++ + + W +I GY N ++ +F +M GV P+ +T
Sbjct: 158 GCLELCRQLFDEMPQRDVVSWTVMIMGYRNGGKYNDALLVFEQMQYGGVVPNRVTMVNAL 217
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A E+ V + + + G+E D+ + +LI MY CG V +G+
Sbjct: 218 SACASSCAIEMGVWIDDMVRRNGWELDVILGTALIDMYVKCG------RVEEGL------ 265
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+VF M E+NV + + +I G +EAL+ F M G
Sbjct: 266 -------------------KVFCDMKEKNVFTLNVVIKGLALAKSVEEALLWFNRMELDG 306
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK--GLSLTLPLQTSLIDMYAKCGAIKE 248
+A+EVTLV+VL AC+H G +++GR + ++D G + ++D+ A+ G ++E
Sbjct: 307 VRADEVTLVTVLSACSHSGLVEKGRFIFSMLVDGKYGFLPNVKHYACMVDLLARAGQLQE 366
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLEL--FTEMQIVGITPDEITFLGLLS 306
A + + + AM G L + ++ LE F ++V + P + LS
Sbjct: 367 AFDIIKCMPFEPTA-----AMWGSLLLGSKSRDDLEFSEFAATKLVELEPYNTAYYVQLS 421
>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
Length = 493
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 153/415 (36%), Positives = 232/415 (55%), Gaps = 39/415 (9%)
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISN------------------ 102
PDHL+ F RL +A VH+ + G+ D+++ N
Sbjct: 69 PDHLSLSFSLHPCSRLPSHPVASVVHSLAVRLGHARDVYVVNAAASAYFAAADVASAERL 128
Query: 103 ---------------SLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
+++ + + GD+ AR FD MP K VSWN+ML YA+ G +
Sbjct: 129 FSEASRDVADVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYARAGMLPK 188
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
AR++F+ MP RN +W ++I G ++ +EAL +F +M G NE LVS + AC
Sbjct: 189 ARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVACGVVPNEPALVSTVSACTQ 248
Query: 208 LGALDQGRMMLRYMIDKGL--SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
L ++ G + Y ++ L +++ L T+++DMY KCG+I++A+ VF + ++
Sbjct: 249 LRWMEHGTWVHGYA-ERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVR--NIYS 305
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA-WYFFKSL 324
WN+MI GLAM+G +++L LF +MQ+ G+ P++ITF+GLLSAC+H GLV E W F+K +
Sbjct: 306 WNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMV 365
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
G+ P EHY MVD L R+G V EA +F+ MP+EP + G+L C HG+++L
Sbjct: 366 NHFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWGALAGACKIHGEVELG 425
Query: 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
E V KKL+EL+P H RY+ LSN+YA RWD+ R ++ R V K G + V
Sbjct: 426 EEVAKKLIELEPQHGSRYILLSNIYATSNRWDDMANVRRILKDRKVPKGTGNAIV 480
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
G+I + +V + + I+ WN++I G + + + +++SLF KM AGV P+ +T+
Sbjct: 286 GSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITF 341
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/460 (33%), Positives = 252/460 (54%), Gaps = 37/460 (8%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+D + ++ + P +F +N + +G+ +P +S+ L+V+MLR VSP TY L KA
Sbjct: 76 LDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKA 135
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
S A R ++ A I K G+ + I +LI Y + G I AR+VFD MP + ++W
Sbjct: 136 SS-FASR-FGESLQAHIWKFGFGFHVKIQTTLIDFYSATGGIREARKVFDEMPERDDIAW 193
Query: 133 -------------------------------NSMLDGYAKCGEMNMARQVFELMPERNVV 161
N +++GY G + A +F MP ++++
Sbjct: 194 TTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDII 253
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
SW+ +I GY + Y+EA+ +F +M + G +EVT+ +V+ ACAHLG L+ G+ + Y
Sbjct: 254 SWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYT 313
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
+ G L + + ++L+DMY+KCG+++ AL+VF + K ++ WN++I GLA HGF +E
Sbjct: 314 LQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPK--KNLFCWNSIIEGLAAHGFAQE 371
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMV 340
+L++F +M++ + P+ +TF+ + +AC H GLV E ++S+ +V EHY MV
Sbjct: 372 ALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMV 431
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400
S+AG + EA E I M EP A + G+LL GC H L +AEI KL+ L+P + G
Sbjct: 432 HLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSG 491
Query: 401 RYVGLSNVYAIFKRWDEARTTREAMETRGVKKY-PGWSFV 439
Y L ++YA RW + R M G++K PG S +
Sbjct: 492 YYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSI 531
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 130/268 (48%), Gaps = 33/268 (12%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LGN++ + + + + I W T+I+GYS++K ++I++F KM+ G+ PD +T +
Sbjct: 234 LGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTV 293
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L E+ VH + G+ D++I ++L+ MY CG + A VF +P K
Sbjct: 294 ISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNL 353
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
WNS+++G A G +EAL +F +M
Sbjct: 354 FCWNSIIEGLAAHGFA-------------------------------QEALKMFAKMEME 382
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKE 248
K N VT VSV AC H G +D+GR + R MID + + ++ +++K G I E
Sbjct: 383 SVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYE 442
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
AL + +E + + +IW A++ G +H
Sbjct: 443 ALELIGNME-FEPNAVIWGALLDGCRIH 469
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 82/188 (43%), Gaps = 5/188 (2%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+++ + V +L +F WN++I G + +++ +F KM V P+ +T+
Sbjct: 333 SKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFV 392
Query: 68 FLAKASGRLAKRELAVAVH-AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A + ++ + I S++ ++H++ G I A E+ M
Sbjct: 393 SVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEF 452
Query: 127 K-MSVSWNSMLDGYAKCGEMNMARQVFE---LMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ +V W ++LDG + +A F ++ N + L+ Y + +++ I
Sbjct: 453 EPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEI 512
Query: 183 FEEMRDVG 190
MR++G
Sbjct: 513 RGRMRELG 520
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 163/433 (37%), Positives = 247/433 (57%), Gaps = 12/433 (2%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + +V L +NT+I Y ++ + LF M P+ T+ +
Sbjct: 153 GRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVM------PERNTHTLME 206
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
G A+ ++ A H G ++ + ++I + G + AR VFDGM +
Sbjct: 207 MVGGYSARGDMDSAKHVFEMANGV-VNMVLCTAMISGFAKTGSVDDARSVFDGMRQRDVA 265
Query: 131 SWNSMLD-GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+WN M+ YAKCG + AR+VF+ MPERNVV W+++I GY + G +K+A+ +F +M+
Sbjct: 266 TWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQIS 325
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G KA++ T+ +V+ +C +GALD GR + Y GL + ++ SLIDMY+KCG IK+A
Sbjct: 326 GVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKA 385
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSAC 308
+F G+ K D W MI G A++G E+L+LF +M+ G + P+EITFLG+L++C
Sbjct: 386 HEIFRGLVKR--DDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTSC 443
Query: 309 AHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
+HGGLV + ++ F + K G+ P+ EHY CMVD L RA + EA +FI +MP+ P ++
Sbjct: 444 SHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIEEMPIAPDVAI 503
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
SLL C G++ LAE V +++ EL+P G V LSNVYA RW + R M
Sbjct: 504 WRSLLFACRARGEVGLAEYVAERVEELEPSRCGGNVLLSNVYATTSRWVDVNKVRTGMGR 563
Query: 428 RGVKKYPGWSFVE 440
V K PG S +E
Sbjct: 564 SRVSKRPGCSVIE 576
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 163/322 (50%), Gaps = 20/322 (6%)
Query: 41 SKNPNKSISLFVKMLRA--GVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDL 98
S +++L+ +M R GV P T + KA+ R VH + K G+++D
Sbjct: 80 SAAARDAVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDE 139
Query: 99 FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
I+ +L+ +Y CG + AR VFD + K + +N+M+ Y + GE+ +A ++FE+MPER
Sbjct: 140 RIATTLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPER 199
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
N + ++ GY GD A +FE V N V +++ A G++D R +
Sbjct: 200 NTHTLMEMVGGYSARGDMDSAKHVFEMANGV---VNMVLCTAMISGFAKTGSVDDARSVF 256
Query: 219 RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGF 278
M + ++ T + + MYAKCG +++A VF + + +V+ W +MI G G
Sbjct: 257 DGMRQRDVA-TWNVMIGV--MYAKCGLVEDARKVFDAMP--ERNVVCWTSMISGYTQVGK 311
Query: 279 VKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV-----MEAWYFFKSLGKRGMVPKS 333
K++++LF +MQI G+ D+ T ++S+C G + + A+ LGK V S
Sbjct: 312 FKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNS 371
Query: 334 EHYACMVDALSRAGQVTEAYEF 355
++D S+ G + +A+E
Sbjct: 372 -----LIDMYSKCGDIKKAHEI 388
>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 159/431 (36%), Positives = 248/431 (57%), Gaps = 2/431 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG++D + +VL + W T+I + + + +++ L+ +ML G P+ + +
Sbjct: 326 LGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSV 385
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L +HA K G ++LF+S+SLI MY C YA+ VF+ +P K +
Sbjct: 386 LSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNT 445
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
V WNS++ GY+ G+M A +F MP RN VSW+ +I GY + + +AL F M
Sbjct: 446 VCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLAS 505
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G E+TL SVL ACA+L +L+ GRM+ ++ G+ + + T+L DMYAK G + +
Sbjct: 506 GHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSS 565
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF+ + + + + W AM+ GLA +GF +ES+ LF +M GI P+E TFL +L AC+
Sbjct: 566 RRVFYQMPEKNN--ITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACS 623
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
H GLV +A ++F+++ G+ PKS+HY CMVD L+RAG + EA E + ++ E S
Sbjct: 624 HCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWS 683
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL+ C + ++ E KKL EL+ D+ YV LSN+YA +W +A TR M+
Sbjct: 684 SLLSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGAS 743
Query: 430 VKKYPGWSFVE 440
+KK G S+++
Sbjct: 744 LKKDAGCSWLQ 754
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 113/395 (28%), Positives = 190/395 (48%), Gaps = 42/395 (10%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ ++ +I G+ +++ + ++F KML V P+ +T + KA + +LA+ V
Sbjct: 211 VAFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVG 270
Query: 88 QIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
K +E + + NSLI +Y GD AR VFD M + VSW ++LD YA G+++
Sbjct: 271 LAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLD 330
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
AR+V + MP RN VSW LI + + GD EAL ++ +M G + N SVL ACA
Sbjct: 331 GARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACA 390
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
L L G + + G S L + +SLIDMY KC A VF+ + + + + W
Sbjct: 391 TLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLP--EKNTVCW 448
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
N++I G + +G + E+ LF +M + +++ ++S A +A +F ++
Sbjct: 449 NSLISGYSWNGKMVEAEGLFNKMP----ARNSVSWNTMISGYAENRRFGDALNYFYAMLA 504
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
G +P G++T L S+L C N L++ +
Sbjct: 505 SGHIP---------------GEIT-----------------LSSVLLACANLCSLEMGRM 532
Query: 387 VGKKLVELQPDHDGRYVG--LSNVYAIFKRWDEAR 419
V ++V+L + D ++G L ++YA D +R
Sbjct: 533 VHAEIVKLGIE-DNIFMGTALCDMYAKSGDLDSSR 566
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 162/388 (41%), Gaps = 60/388 (15%)
Query: 48 ISLFVKMLRAGVSPDH-------LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFI 100
+SL LR+G++ D Y A+A R VA A + + D +
Sbjct: 100 LSLHAHALRSGLATDRSVASNLLTAYAAFARAGDRDQAFRDCVAADAA---SSFTYDFMV 156
Query: 101 SNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNV 160
S + GDI AR +F GMP K VS+ +M+D K G + A +++E P +V
Sbjct: 157 SEHV-----KAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSV 211
Query: 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY 220
++A+I G+V+ +K+A +F +M + N VTL+ V+ AC G D ++
Sbjct: 212 AFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGL 271
Query: 221 MIDKGL-SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM------IGGL 273
+ L ++ + SLI +Y + G A VF +E DV+ W A+ +G L
Sbjct: 272 AVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVR--DVVSWTALLDVYADLGDL 329
Query: 274 ----------------------AMH---GFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A H G E+L+L+++M G P+ F +LSAC
Sbjct: 330 DGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSAC 389
Query: 309 A-----HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
A GG + A V S ++D + Q T A +P E
Sbjct: 390 ATLQDLRGGTRIHANALKMGSSTNLFVSSS-----LIDMYCKCKQCTYAQRVFNSLP-EK 443
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKL 391
SL++G +GK+ AE + K+
Sbjct: 444 NTVCWNSLISGYSWNGKMVEAEGLFNKM 471
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 159/445 (35%), Positives = 257/445 (57%), Gaps = 11/445 (2%)
Query: 5 SALSYLGNIDYSCKVLSHLSN----PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+A + G +D + ++ S + + P + WN +I G++ S ++++ +F+ M G
Sbjct: 188 AAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFE 247
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD T + A G L + + +H + K G SD +S++LI MYG C +V
Sbjct: 248 PDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQV 307
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER----NVVSWSALIDGYVKCGDY 176
FD M S N+ + G ++ G++ + ++F + ++ NVVSW+++I + G
Sbjct: 308 FDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRD 367
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
EAL +F EM+ G K N VT+ +L AC ++ AL G+ + + +G+S + + ++L
Sbjct: 368 IEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSAL 427
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
IDMYAKCG I+ + I F G+ +++ WNA+I G AMHG KE++E+F MQ G P
Sbjct: 428 IDMYAKCGRIQASRICFDGIPT--KNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKP 485
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
D I+F +LSAC+ GL E Y+F S+ K G+ + EHYACMV LSRAG++ +AY
Sbjct: 486 DIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAM 545
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
I +MP+ P A + G+LL+ C H + L E+ +KL EL+P + G Y+ LSN+YA W
Sbjct: 546 IRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMW 605
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
+E R+ M+ +G++K PG S++E
Sbjct: 606 NEVNRVRDMMKNKGLRKNPGCSWIE 630
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 179/328 (54%), Gaps = 6/328 (1%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
VL + P +F ++T+I +SK + ++S F +ML G+ PD+ P KA L+
Sbjct: 70 VLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSA 129
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
+ A VH + +G++SD F+ +SL+HMY C I A VFD M VSW++++
Sbjct: 130 LKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAA 189
Query: 139 YAKCGEMNMARQVFELMPER----NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
YA+ G ++ A+++F M + N++SW+ +I G+ G Y EA+++F +M G + +
Sbjct: 190 YARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPD 249
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
T+ SVL A L L G ++ Y+I +GL + ++LIDMY KC E VF
Sbjct: 250 GTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFD 309
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
++ DV NA I GL+ +G V+ SL LF +++ G+ + +++ +++ C+ G
Sbjct: 310 QMD--HMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRD 367
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDA 342
+EA F+ + G+ P S C++ A
Sbjct: 368 IEALELFREMQIAGVKPNSVTIPCLLPA 395
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 124/284 (43%), Gaps = 36/284 (12%)
Query: 48 ISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHM 107
+SL + L S H + L + L++ A HA I KTG +D ++ L+
Sbjct: 1 MSLSAQALALLDSVQHTIFNCLNSTTASLSQTRQA---HAHILKTGLFNDTHLATKLLSH 57
Query: 108 YGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALI 167
Y + ++ +A A V +L+PE NV S+S LI
Sbjct: 58 YAN--NMCFAD-----------------------------ATLVLDLVPEPNVFSFSTLI 86
Query: 168 DGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS 227
+ K + AL F +M G + L S + ACA L AL R + G
Sbjct: 87 YAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFD 146
Query: 228 LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFT 287
+Q+SL+ MY KC I++A VF + DV+ W+A++ A G V E+ LF+
Sbjct: 147 SDSFVQSSLVHMYIKCNQIRDAHRVFD--RMFEPDVVSWSALVAAYARQGCVDEAKRLFS 204
Query: 288 EMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
EM G+ P+ I++ G+++ H GL EA F + RG P
Sbjct: 205 EMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEP 248
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/359 (41%), Positives = 230/359 (64%), Gaps = 5/359 (1%)
Query: 86 HAQIAKTGY--ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
H+ + K G+ SD F+S++L+ Y +V AR+VFD + + + +N++L YAK G
Sbjct: 108 HSLLIKLGHFASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGG 167
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD-VGSKANEVTLVSVL 202
++ A ++FE MP+RNVVSW+A++ GY + G ++EA+ F EM + G + NE+T+ SVL
Sbjct: 168 LVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVL 227
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
ACA +GA++ GR + Y KGL + + +L++MY+KCG+I++A VF G+ + Q D
Sbjct: 228 PACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQ-D 286
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
+ WN+MI A+HG +E+L LF ++++ G+ PD ITF+G++ AC HGGLV E FF
Sbjct: 287 LCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLFFD 346
Query: 323 SL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
S+ + + P+ EHY CMVD L RAG + E+Y I MP+EP A + G+LL C HG +
Sbjct: 347 SMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHGNV 406
Query: 382 DLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+LAE+ KL+ L+P + V LSN+YA +WD + ++ + KK G+SF+E
Sbjct: 407 ELAELAMDKLIHLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKDHKKSAGYSFIE 465
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 143/308 (46%), Gaps = 41/308 (13%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPD 62
SA + G +D + K+ + + + W ++ GY+++ +++ F++M RAGV P+
Sbjct: 160 LSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPN 219
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
LT + A + EL V G +++++N+L+ MY CG I A +VF
Sbjct: 220 ELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQ 279
Query: 123 GMPTKMSV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
G+ + + SWNSM+ +A G ++EAL
Sbjct: 280 GIGRQQDLCSWNSMIMAFAVHGL-------------------------------WREALA 308
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMY 240
+F ++R G K + +T V V+ AC H G +++G++ M + L + ++D+
Sbjct: 309 LFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFSLKPRIEHYGCMVDLL 368
Query: 241 AKCGAIKE--ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
+ G + E +LI VE D +IW A++G + HG V E EL + +++ + P
Sbjct: 369 GRAGLLIESYSLIASMPVE---PDAVIWGALLGACSFHGNV-ELAELAMD-KLIHLEPQN 423
Query: 299 ITFLGLLS 306
L +LS
Sbjct: 424 TANLVILS 431
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 166/435 (38%), Positives = 241/435 (55%), Gaps = 4/435 (0%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S + L + Y+ ++ +H NP I +N +I+ +S + S S F M +SPD
Sbjct: 48 SVCASLRRVPYATRLFAHTHNPNILLFNAIIKAHSLHPPFHASFSFFSLMKTRAISPDEY 107
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T L K++ L L VHA + + G+ + + + +Y SC + A +VFD M
Sbjct: 108 TLAPLFKSASNLRYYVLGGCVHAHVVRLGFTRHASVRVAALEVYASCERMGDASKVFDEM 167
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
V WN M+ G+ K G++ +VF M ER VVSW+ ++ K ++AL +F
Sbjct: 168 RDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSCLAKNNKEEKALELFN 227
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG-LSLTLPLQTSLIDMYAKC 243
EM + G + ++ +LV+VL CA LGA+D G + Y KG L T+ + SL+D Y KC
Sbjct: 228 EMLEQGFEPDDASLVTVLPVCARLGAVDIGEWIHSYANSKGFLQDTINVGNSLVDFYCKC 287
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G ++ A +F+ + +V+ WNAMI GLA +G + + LF EM G P++ TF+G
Sbjct: 288 GNLQAAWSIFNDMA--SKNVVSWNAMISGLAYNGEGEVGVNLFEEMVHGGFEPNDSTFVG 345
Query: 304 LLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+L+ CAH GLV F S+ K + PK EHY C+VD L R G V EA + I MPL+
Sbjct: 346 VLACCAHVGLVDRGRDLFASMSVKFKVSPKLEHYGCVVDLLGRCGHVREARDLITSMPLK 405
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
PTA++ G+LL+ C +G ++AE K+LV L+P + G YV LSNVYA RWDE R
Sbjct: 406 PTAALWGALLSACRTYGDREIAENAAKELVRLEPWNSGNYVLLSNVYAEEGRWDEVEKVR 465
Query: 423 EAMETRGVKKYPGWS 437
M GVKK PG S
Sbjct: 466 VLMRGGGVKKVPGQS 480
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 169/500 (33%), Positives = 256/500 (51%), Gaps = 75/500 (15%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPFLAK 71
+ Y+ V +H + WN+++R + S P +++ + +ML R+ PD T+P L K
Sbjct: 28 VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
L + ++ +H Q+ K SDL+I +L++MY +CGD+ AR +F+ M + V
Sbjct: 88 GCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVV 147
Query: 132 WNSMLDGYAK--------------------------------CGE-------MNMARQVF 152
W SM+ GY K C E M + +
Sbjct: 148 WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIR 207
Query: 153 ELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV----------------------- 189
E+ + V SAL++ Y KCGD K A +F+++ D
Sbjct: 208 EMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQ 267
Query: 190 -------GS--KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
GS + NEVT+++V+ ACA LG L+ GR + Y+ ++ L SLIDM+
Sbjct: 268 LFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMF 327
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
+KCG I A +F + D++ WN+M+ G A+HG +E+L F MQ + PDEIT
Sbjct: 328 SKCGDIDAAKRIFDSMS--YKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEIT 385
Query: 301 FLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+G+L+AC+H GLV E F + G+ KSEHY CMVD L RAG + EA EFI M
Sbjct: 386 FIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVM 445
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
PL+P ++ GS+L C + L+L E + L++L+P +DG Y+ LSN+YA K W+E +
Sbjct: 446 PLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVK 505
Query: 420 TTREAMETRGVKKYPGWSFV 439
RE M +G++K PG S V
Sbjct: 506 KVRELMNEKGIQKTPGCSSV 525
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 125/265 (47%), Gaps = 36/265 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPFL 69
G++ + +V LS+ ++ W+ +I GY K+ +++ LF ++ + + P+ +T +
Sbjct: 229 GDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAV 288
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A +L E VH I +T + ++NSLI M+ CGDI A+ +FD M K
Sbjct: 289 ISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDL 348
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+SWNSM++G+A G + R EAL F M+
Sbjct: 349 ISWNSMVNGFALHG---LGR----------------------------EALAQFRLMQTT 377
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK--GLSLTLPLQTSLIDMYAKCGAIK 247
+ +E+T + VL AC+H G + +G+ + Y I+ G+ L ++D+ + G +
Sbjct: 378 DLQPDEITFIGVLTACSHAGLVQEGKKLF-YEIEALYGVRLKSEHYGCMVDLLCRAGLLA 436
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGG 272
EA F V Q D IW +M+G
Sbjct: 437 EAR-EFIRVMPLQPDGAIWGSMLGA 460
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/359 (41%), Positives = 230/359 (64%), Gaps = 5/359 (1%)
Query: 86 HAQIAKTGY--ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
H+ + K G+ SD F+S++L+ Y +V AR+VFD + + + +N++L YAK G
Sbjct: 108 HSLLIKLGHFASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGG 167
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD-VGSKANEVTLVSVL 202
++ A ++FE MP+RNVVSW+A++ GY + G ++EA+ F EM + G + NE+T+ SVL
Sbjct: 168 LVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVL 227
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
ACA +GA++ GR + Y KGL + + +L++MY+KCG+I++A VF G+ + Q D
Sbjct: 228 PACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQ-D 286
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
+ WN+MI A+HG +E+L LF ++++ G+ PD ITF+G++ AC HGGLV E FF
Sbjct: 287 LCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLFFD 346
Query: 323 SL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
S+ + + P+ EHY CMVD L RAG + E+Y I MP+EP A + G+LL C HG +
Sbjct: 347 SMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHGNV 406
Query: 382 DLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+LAE+ KL+ L+P + V LSN+YA +WD + ++ + KK G+SF+E
Sbjct: 407 ELAELAMDKLIHLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKDHKKSAGYSFIE 465
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 143/308 (46%), Gaps = 41/308 (13%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPD 62
SA + G +D + K+ + + + W ++ GY+++ +++ F++M RAGV P+
Sbjct: 160 LSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPN 219
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
LT + A + EL V G +++++N+L+ MY CG I A +VF
Sbjct: 220 ELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQ 279
Query: 123 GMPTKMSV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
G+ + + SWNSM+ +A G ++EAL
Sbjct: 280 GIGRQQDLCSWNSMIMAFAVHGL-------------------------------WREALA 308
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMY 240
+F ++R G K + +T V V+ AC H G +++G++ M + L + ++D+
Sbjct: 309 LFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFSLKPRIEHYGCMVDLL 368
Query: 241 AKCGAIKE--ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
+ G + E +LI VE D +IW A++G + HG V E EL + +++ + P
Sbjct: 369 GRAGLLIESYSLIASMPVE---PDAVIWGALLGACSFHGNV-ELAELAMD-KLIHLEPQN 423
Query: 299 ITFLGLLS 306
L +LS
Sbjct: 424 TANLVILS 431
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 161/431 (37%), Positives = 245/431 (56%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ S + + + + WN++I GY+++ + + SLF +M R G D T L
Sbjct: 161 GSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLL 220
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + E+ VH ++ +G DL + ++L+ MYG CGD+ AR F+ MP K V
Sbjct: 221 IACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVV 280
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW SML K G +N AR F+ MPERN+VSW+A+I YV+ G EAL ++ +M+ G
Sbjct: 281 SWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQG 340
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+E+TLV+VL A +G L G+M+ Y+ D + + L SL+DMYAKCG + A+
Sbjct: 341 LAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAI 400
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F E +V+ WN +IGGLAMHG +++ F M PD ITF+ LLSAC+H
Sbjct: 401 SLFS--EMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALLSACSH 458
Query: 311 GGLVMEAWYFFKSLGKRGMVPKS-EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GGL+ ++F+S+ V EHYACMVD L R G + +A I +MP++P + G
Sbjct: 459 GGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWG 518
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C HG + + V K+L+EL+ G +V +SN+ +W++ + R+ M+ G
Sbjct: 519 ALLGACRIHGNVKIGRQVIKQLLELEGISGGLFVLISNLLYETHQWEDMKRLRKLMKEWG 578
Query: 430 VKKYPGWSFVE 440
+K G S +E
Sbjct: 579 TRKDMGVSSIE 589
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 177/388 (45%), Gaps = 62/388 (15%)
Query: 3 SFSALSYLGN--IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
S+ AL+ G+ + ++ ++ + P +NT+IR Y S P +++ L MLR G+
Sbjct: 50 SYCALAKAGHGVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGIL 109
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ T PF+ KA RE A+AVH + G +F+ N+L+H
Sbjct: 110 PNEFTLPFVVKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLH-------------- 155
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
YA G + +R+ F+ M +RNVVSW+++I GY + GD +E
Sbjct: 156 -----------------SYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVC 198
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F EMR G +E TLVS+L AC+ G L+ GR++ M+ G + L L+++L+DMY
Sbjct: 199 SLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMY 258
Query: 241 AKCGAIKEALIVFH---------------GVEKHQS--------------DVLIWNAMIG 271
KCG + A F KH S +++ WNAMI
Sbjct: 259 GKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMIS 318
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
G E+L+L+ +MQ G+ PDEIT + +LSA G + + P
Sbjct: 319 CYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNP 378
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQM 359
++D ++ GQV A +M
Sbjct: 379 DVSLVNSLLDMYAKCGQVDTAISLFSEM 406
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/469 (33%), Positives = 255/469 (54%), Gaps = 37/469 (7%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
+A + +D + ++ + P +F +N + +G+ +P +S+ L+V+MLR VSP
Sbjct: 812 ITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSS 871
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
TY L KAS A R ++ A I K G+ + I +LI Y + G I AR+VFD
Sbjct: 872 YTYSSLVKASS-FASR-FGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDE 929
Query: 124 MPTKMSVSW-------------------------------NSMLDGYAKCGEMNMARQVF 152
MP + ++W N +++GY G + A +F
Sbjct: 930 MPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLF 989
Query: 153 ELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD 212
MP ++++SW+ +I GY + Y+EA+ +F +M + G +EVT+ +V+ ACAHLG L+
Sbjct: 990 NQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLE 1049
Query: 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
G+ + Y + G L + + ++L+DMY+KCG+++ AL+VF + K ++ WN++I G
Sbjct: 1050 IGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPK--KNLFCWNSIIEG 1107
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVP 331
LA HGF +E+L++F +M++ + P+ +TF+ + +AC H GLV E ++S+ +V
Sbjct: 1108 LAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVS 1167
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL 391
EHY MV S+AG + EA E I M EP A + G+LL GC H L +AEI KL
Sbjct: 1168 NVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKL 1227
Query: 392 VELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY-PGWSFV 439
+ L+P + G Y L ++YA RW + R M G++K PG S +
Sbjct: 1228 MVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSI 1276
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/440 (35%), Positives = 240/440 (54%), Gaps = 33/440 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L ALS LGN+ ++ S + P WN +IRG+ +S NP + + + M+
Sbjct: 44 LLELYALS-LGNLSFAILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRK 102
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
D LT F+ KA R+ R ++ +H I + G+ +D + +L
Sbjct: 103 VDALTCSFVLKACARVLARLESIQIHTHIVRKGFIADALLGTTL---------------- 146
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
LD YAK GE++ A +VF+ M +R++ SW+ALI G+ + EAL
Sbjct: 147 ---------------LDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEAL 191
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F+ M G K NE++++ L ACA LG +G + Y+ + + + +IDMY
Sbjct: 192 SLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMY 251
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG + +A +VF + + D++ WN MI AMHG ++LELF +M G++PD+++
Sbjct: 252 AKCGFVDKAYLVFESMSCRK-DIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVS 310
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+L +L AC HGGLV E + F S+ G+ P +HY +VD L RAG++ EAY+ + MP
Sbjct: 311 YLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMP 370
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
P + +LL H +++AE V +KLVE+ +H G +V LSNVYA +RW +
Sbjct: 371 TVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVGR 430
Query: 421 TREAMETRGVKKYPGWSFVE 440
REAM+ R VKK PG S++E
Sbjct: 431 VREAMKNRDVKKVPGLSYIE 450
>gi|297843840|ref|XP_002889801.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335643|gb|EFH66060.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 467
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 159/413 (38%), Positives = 240/413 (58%), Gaps = 8/413 (1%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
+NT+IR Y + S++LF ML + V P++LT+P L KA+ VA+H Q
Sbjct: 54 YNTLIRSYLTTGQYKASLALFTHMLASQVQPNNLTFPSLIKAACSSFSVSSGVALHGQAF 113
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ G D F+ S + YG GD+ +R++FD + V+ NS+LD + GEMN A +
Sbjct: 114 RRGVLWDPFVQTSFVRFYGEVGDLKSSRKMFDDILDPCVVACNSLLDACGRNGEMNSAFE 173
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM---RDVGSKANEVTLVSVLCACAH 207
+F+ MP +VVSW+ +I+G+ K G + +AL++F EM + NE T V VL +CA+
Sbjct: 174 LFQKMPVTDVVSWTTVINGFSKNGLHAKALMVFGEMIQNQRAVITPNEATFVCVLSSCAN 233
Query: 208 L--GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
G + G+ + Y++ K + LT L T+L+DMY K G ++ AL +FH + + V
Sbjct: 234 FDQGGIRLGKQIHGYILTKEIILTPILGTALLDMYGKAGDLEMALTIFHQIRDKK--VCA 291
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL- 324
WNA+I LA +G K++LE+F M+ + P+ IT L +L+ACA LV F S+
Sbjct: 292 WNAIIPALASNGRPKQTLEMFEMMKSSNVHPNGITLLAILTACARYKLVDLGIQLFSSIC 351
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
+ ++P SEHY C+VD + RAG + +A FI +P EP AS+ G+LL C H +L
Sbjct: 352 SEFKIIPTSEHYGCIVDLIGRAGLLVDAANFIKNLPFEPDASVFGALLGACKIHENAELG 411
Query: 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
VGK+L+ LQP H G+YV LS + A+ W EA R+AM G++K P +S
Sbjct: 412 NKVGKQLIVLQPQHCGQYVALSMLNALDSNWSEAEQMRKAMIEAGIRKIPAYS 464
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/296 (19%), Positives = 121/296 (40%), Gaps = 44/296 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML---RAGVSPDHLTYP 67
G ++ + ++ + + W TVI G+SK+ K++ +F +M+ RA ++P+ T+
Sbjct: 166 GEMNSAFELFQKMPVTDVVSWTTVINGFSKNGLHAKALMVFGEMIQNQRAVITPNEATFV 225
Query: 68 FLAKASGRLAKR--ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ + + L +H I + +L+ MYG GD+ A +F +
Sbjct: 226 CVLSSCANFDQGGIRLGKQIHGYILTKEIILTPILGTALLDMYGKAGDLEMALTIFHQIR 285
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
K +WN+++ A G ++FE+M NV
Sbjct: 286 DKKVCAWNAIIPALASNGRPKQTLEMFEMMKSSNV------------------------- 320
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCG 244
N +TL+++L ACA +D G + + + + T ++D+ + G
Sbjct: 321 ------HPNGITLLAILTACARYKLVDLGIQLFSSICSEFKIIPTSEHYGCIVDLIGRAG 374
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM--QIVGITPDE 298
+ +A + + D ++ A++G +H E+ EL ++ Q++ + P
Sbjct: 375 LLVDAANFIKNLP-FEPDASVFGALLGACKIH----ENAELGNKVGKQLIVLQPQH 425
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 166/434 (38%), Positives = 247/434 (56%), Gaps = 38/434 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I + K+ + + WN +I GY+++ +++ LF +M++ V PD TY +
Sbjct: 144 GDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVL 203
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A EL VH+ + G++S+L I N+LI
Sbjct: 204 SACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALI------------------------- 238
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
D Y+KCGE+ A +F+ + ++V+SW+ LI GY YKEAL++F+EM G
Sbjct: 239 ------DLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 292
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKCGAIK 247
N+VT++SVL ACAHLGA+D GR + Y IDK G++ L+TSLIDMYAKCG I+
Sbjct: 293 ETPNDVTMLSVLPACAHLGAIDIGRWIHVY-IDKRLKGVTNASSLRTSLIDMYAKCGDIE 351
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VF+ + H+S + WNAMI G AMHG S +LF+ M+ +GI PD+ITF+GLLSA
Sbjct: 352 AAHQVFNSM-LHKS-LSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSA 409
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H G++ + F+S+ + M PK EHY CM+D L +G EA E I M +EP
Sbjct: 410 CSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGV 469
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ SLL C HG ++LAE + L++++P++ Y+ LSN+YA RW++ R +
Sbjct: 470 IWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLN 529
Query: 427 TRGVKKYPGWSFVE 440
+ +KK PG S +E
Sbjct: 530 GKCMKKVPGCSSIE 543
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 134/401 (33%), Positives = 226/401 (56%), Gaps = 8/401 (1%)
Query: 9 YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPF 68
+ + Y+ V + P WNT+IRG++ S +P S++L+V M+ G+ P+ T+PF
Sbjct: 10 HFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPF 69
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
L K+ + +H Q+ K G++ DL++ SLI MY + A +VFD +
Sbjct: 70 LLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRD 129
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
VS+ +++ GYA G++ A+++F+ +P ++VVSW+A+I GY + G YKEAL +FEEM
Sbjct: 130 VVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMK 189
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
+ + +E T V+VL ACAH G+++ GR + ++ D G L + +LID+Y+KCG ++
Sbjct: 190 MNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVET 249
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A +F G+ DV+ WN +IGG KE+L LF EM G TP+++T L +L AC
Sbjct: 250 ACGLFQGLS--YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPAC 307
Query: 309 AHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
AH G + + + KR G+ S ++D ++ G + A++ M L + S
Sbjct: 308 AHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLS 366
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKL--VELQPDHDGRYVGL 405
+++ G HG+ D + + ++ + ++PD D +VGL
Sbjct: 367 SWNAMIFGFAMHGRADASFDLFSRMRKIGIEPD-DITFVGL 406
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 143/302 (47%), Gaps = 37/302 (12%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G ++ +C + LS + WNT+I GY+ +++ LF +MLR+G +P+ +T
Sbjct: 242 SKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTML 301
Query: 68 FLAKASGRLAKRELAVAVHAQIAK--TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ A L ++ +H I K G + + SLI MY CGDI A +VF+ M
Sbjct: 302 SVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSML 361
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
K SWN+M+ G+A G + + F+L F
Sbjct: 362 HKSLSSWNAMIFGFAMHGRADAS---FDL----------------------------FSR 390
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCG 244
MR +G + +++T V +L AC+H G LD GR + R M D ++ L +ID+ G
Sbjct: 391 MRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSG 450
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
KEA + + +E + D +IW +++ MHG V E E F + ++ I P+ + L
Sbjct: 451 LFKEAEEMINTMEM-EPDGVIWCSLLKACKMHGNV-ELAESFAQ-NLIKIEPENPSSYIL 507
Query: 305 LS 306
LS
Sbjct: 508 LS 509
>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 474
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 165/442 (37%), Positives = 247/442 (55%), Gaps = 36/442 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+LSF ALS G++ Y+ ++ ++ P F WNT+IR ++ S NP++++ L+V M R V
Sbjct: 64 LLSFCALSESGDLSYALRLFNNTQEPNSFMWNTLIRAHASSLNPSEALLLYVDMRRLDVI 123
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P T+PFL KA + + VH + K G + +L + N L+ Y D+
Sbjct: 124 PGKHTFPFLLKACSNFQSLQSCIQVHTHVLKFGLDLNLHVVNGLVRAYSVSCDV------ 177
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
AR+VF+ + ER++ W+ +I GY + EAL
Sbjct: 178 -------------------------RNARRVFDEVSERSLSIWTTMISGYAQNYCSNEAL 212
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F++M G + N TL SVL ACA G LD G + +M +KG+ + + L T+L+ MY
Sbjct: 213 ELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTALVHMY 272
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AK GAI A +F + + + WNAMI GLA+HG KE+L+ F +++ I P++IT
Sbjct: 273 AKNGAILMAQKLFDTIS--ERNTATWNAMICGLAVHGHAKEALDRFWKLEKEQIVPNDIT 330
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
F+G+LSAC H GL+ F L KR G+ PK EHY CMVD L R G++ EA E I
Sbjct: 331 FVGVLSACCHAGLLSVGRKIFH-LMKRVYGIEPKIEHYGCMVDLLGRGGELLEAEELIKG 389
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
M + +LG+LL C NHG +++AE V K+++ L+P + G YV LSN+YA RW++
Sbjct: 390 MAWKADVVILGALLGSCKNHGNIEIAERVVKEILVLEPHNHGVYVVLSNMYAEAGRWEDV 449
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R+ M++ +KK PGWS V+
Sbjct: 450 LRLRKVMKSGNLKKTPGWSLVD 471
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/445 (35%), Positives = 247/445 (55%), Gaps = 9/445 (2%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SA + LG+ D++ ++ + + + R + S ++I++F M+ GV PD+
Sbjct: 52 LSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDN 111
Query: 64 LTYPF----LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
+ A A+R +HA + +G D+F+S LI +YG G++ +R
Sbjct: 112 VAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRR 171
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD MP++ +++WN+ML YA+ G+++ A ++F MP R+VVSW+ ++ GY G +EA
Sbjct: 172 VFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREA 231
Query: 180 LVIFEEMRDVGSKA---NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
L +F +M S A N T+ ++L ACA G L+ G + Y+ ++ L L
Sbjct: 232 LGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCL 291
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
IDMY KCG+I AL VF + + D+ W +I GLAMHG ++L +F MQ GI P
Sbjct: 292 IDMYCKCGSIDNALQVFEKAPR-KKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICP 350
Query: 297 DEITFLGLLSACAHGGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
D++T +G+L+ACAHGGLV E YF+ K + PK EHY CM+D L R G++ EAY
Sbjct: 351 DDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSM 410
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
I MP++P + G+ L+ C HG ++L +I ++L L PD V LS++YA + W
Sbjct: 411 IRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDW 470
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
R M + VKK PG S +E
Sbjct: 471 IGLARERREMNSMQVKKTPGCSSIE 495
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 119/284 (41%), Gaps = 36/284 (12%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
++L YA G + AR++F+ MPE+ +V +A+ +V G +A+ +F +M G
Sbjct: 49 TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 108
Query: 193 ANEVTLVSVLCACAHLGA----LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
+ V + L AC G+ + G+M+ ++ G+ + + T LI +Y + G +
Sbjct: 109 PDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPV 168
Query: 249 ALIVF---------------HGVEKH--------------QSDVLIWNAMIGGLAMHGFV 279
+ VF H +H + DV+ WN ++ G + G
Sbjct: 169 SRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRC 228
Query: 280 KESLELFTEM---QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHY 336
+E+L LF +M + P+ T +L ACA G + + + + M
Sbjct: 229 REALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLD 288
Query: 337 ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
C++D + G + A + + P + +++ G HG+
Sbjct: 289 RCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGR 332
>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
Length = 476
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 165/442 (37%), Positives = 247/442 (55%), Gaps = 36/442 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+LSF ALS G++ Y+ ++ ++ P F WNT+IR ++ S NP++++ L+V M R V
Sbjct: 66 LLSFCALSESGDLSYALRLFNNTQEPNSFMWNTLIRAHASSLNPSEALLLYVDMRRLDVI 125
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P T+PFL KA + + VH + K G + +L + N L+ Y D+
Sbjct: 126 PGKHTFPFLLKACSNFQSLQSCIQVHTHVLKFGLDLNLHVVNGLVRAYSVSCDV------ 179
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
AR+VF+ + ER++ W+ +I GY + EAL
Sbjct: 180 -------------------------RNARRVFDEVSERSLSIWTTMISGYAQNYCSNEAL 214
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F++M G + N TL SVL ACA G LD G + +M +KG+ + + L T+L+ MY
Sbjct: 215 ELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTALVHMY 274
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AK GAI A +F + + + WNAMI GLA+HG KE+L+ F +++ I P++IT
Sbjct: 275 AKNGAILMAQKLFDXIS--ERNTATWNAMICGLAVHGHAKEALDRFWKLEKEQIVPNDIT 332
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
F+G+LSAC H GL+ F L KR G+ PK EHY CMVD L R G++ EA E I
Sbjct: 333 FVGVLSACCHAGLLSVGRKIFH-LMKRVYGIEPKIEHYGCMVDLLGRGGELLEAEELIKG 391
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
M + +LG+LL C NHG +++AE V K+++ L+P + G YV LSN+YA RW++
Sbjct: 392 MAWKADVVILGALLGSCKNHGNIEIAERVVKEILVLEPHNHGVYVVLSNMYAEAGRWEDV 451
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R+ M++ +KK PGWS V+
Sbjct: 452 LRLRKVMKSGNLKKTPGWSLVD 473
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 162/430 (37%), Positives = 249/430 (57%), Gaps = 6/430 (1%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
IDY+ ++ + NP ++ + +I G+ S N ++I L+ +ML + PD+ + KA
Sbjct: 97 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKA 156
Query: 73 SG-RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
G +LA RE VH++ K G+ S+ + ++ +YG CG++ AR VF+ MP + V+
Sbjct: 157 CGSQLALRE-GREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDV-VA 214
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
M+ Y+ G + A VF + ++ V W+A+IDG+V+ + AL F M+
Sbjct: 215 STVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENV 274
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ NE T+V VL AC+ LGAL+ GR + YM + L L + +LI+MY++CG+I EA
Sbjct: 275 RPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQT 334
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF E DV+ +N MI GL+M+G ++++ELF M + P +TF+G+L+AC+HG
Sbjct: 335 VFD--EMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHG 392
Query: 312 GLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GLV + F S+ + V P+ EHY CMVD L R G++ EAY+ I M + P MLG+
Sbjct: 393 GLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGT 452
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL+ C H L+L E V K+L + G YV LS+VYA +W EA R M+ G+
Sbjct: 453 LLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 512
Query: 431 KKYPGWSFVE 440
+K PG S +E
Sbjct: 513 QKEPGCSSIE 522
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 140/327 (42%), Gaps = 34/327 (10%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S+ S G ++ + V S + W +I G+ +++ N+++ F M V P+
Sbjct: 219 ISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNE 278
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + A +L E+ VH+ + K E +LF+ N+LI+MY CG I A+ VFD
Sbjct: 279 FTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDE 338
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + +++N+M+ G + G+ A ++F +M R +
Sbjct: 339 MKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRL----------------------- 375
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAK 242
+ VT V VL AC+H G +D G + M D + + ++D+ +
Sbjct: 376 --------RPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGR 427
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
G ++EA + + K D ++ ++ MH ++ ++ E++ G D T++
Sbjct: 428 VGRLEEAYDLIRTM-KMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRG-QADSGTYV 485
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKRGM 329
L A G EA + + GM
Sbjct: 486 LLSHVYASSGKWKEAAQVRAKMKEAGM 512
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 164/449 (36%), Positives = 250/449 (55%), Gaps = 12/449 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSK--NPNKSISLFVKMLRAG 58
+L F L L N+ Y+ + S P + V+ YS S + + + S F M+
Sbjct: 62 LLRFCTLR-LCNLSYARFIFDRFSFPNTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRS 120
Query: 59 VS-PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGS-CGDIVY 116
V P+H YP + K++ L+ VH + K+G+ + + +L+H Y S I
Sbjct: 121 VPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITL 180
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
AR++FD M + VSW +ML GYA+ G+++ A +FE MPER+V SW+A++ + G +
Sbjct: 181 ARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLF 240
Query: 177 KEALVIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
EA+ +F M + S + NEVT+V VL ACA G L + + + + LS + + S
Sbjct: 241 LEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNS 300
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM---QIV 292
L+D+Y KCG ++EA VF K + WN+MI A+HG +E++ +F EM I
Sbjct: 301 LVDLYGKCGNLEEASSVFKMASK--KSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNIN 358
Query: 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTE 351
I PD ITF+GLL+AC HGGLV + +F + R G+ P+ EHY C++D L RAG+ E
Sbjct: 359 DIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDE 418
Query: 352 AYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI 411
A E + M ++ ++ GSLL C HG LDLAE+ K LV L P++ G ++N+Y
Sbjct: 419 ALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGE 478
Query: 412 FKRWDEARTTREAMETRGVKKYPGWSFVE 440
W+EAR R+ ++ + K PGWS +E
Sbjct: 479 MGNWEEARRARKMIKHQNAYKPPGWSRIE 507
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 166/432 (38%), Positives = 240/432 (55%), Gaps = 3/432 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+ I Y+ + + +F +NT+IRG K P S+ LF ++L + PD+ TY F+
Sbjct: 34 MSEISYARSIFERIPYLDVFVYNTMIRGLMLGKRPYDSLLLFNELLLGCLKPDNYTYTFV 93
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA VH QI K G + I +SLIHMY S G IV A V + +
Sbjct: 94 LKACSNQKALPEGKQVHCQIIKAGISPNTHIHSSLIHMYTSSGSIVEAECVLREFSEENT 153
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
++ NSM+ GY G ++ AR +F+ M ++V SWSA+I G K G + EAL +FE+M
Sbjct: 154 LAKNSMISGYLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTEALALFEDMMVS 213
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ NE LVS+L ACAHLGAL QGR + Y+ G +++ L T+LIDMYAKCG I+
Sbjct: 214 HTLPNESALVSLLSACAHLGALHQGRWIHAYIDRIGADMSIRLSTALIDMYAKCGDIQSG 273
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
F + + D++ W A+I G A++G K+ ELF EM GI P+ + F+ +LSAC+
Sbjct: 274 YKFFRKMPRR--DIVTWGAIISGFAIYGQAKKCFELFEEMLADGIYPNGVIFVAILSACS 331
Query: 310 HGGLVMEA-WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H G V E YF + + G+ P EHY CMVD L RAG++ EA EFI MP +P + +
Sbjct: 332 HAGYVEEGKLYFNQMMVDLGIRPSIEHYGCMVDLLGRAGRLKEAEEFIISMPEKPNSVIW 391
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
GS+L+ C H L+ + L+EL+P RY ++ EA R+ +E +
Sbjct: 392 GSMLSACRTHNDLNRGSWAFRHLIELEPRSGDRYKLAGLMFGNAGEKQEATKIRKMIEDQ 451
Query: 429 GVKKYPGWSFVE 440
G++ G SF+E
Sbjct: 452 GMETTSGSSFIE 463
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 133/295 (45%), Gaps = 30/295 (10%)
Query: 115 VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
++A+ V G+ S+ +L+ Y E++ AR +FE +P +V ++ +I G +
Sbjct: 7 LHAQFVVSGLLNHHSLCGRRLLESYVTMSEISYARSIFERIPYLDVFVYNTMIRGLMLGK 66
Query: 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT 234
++L++F E+ K + T VL AC++ AL +G+ + +I G+S + +
Sbjct: 67 RPYDSLLLFNELLLGCLKPDNYTYTFVLKACSNQKALPEGKQVHCQIIKAGISPNTHIHS 126
Query: 235 SLIDMYAKCGAIKEALIVFHGVEKHQS-----------------------------DVLI 265
SLI MY G+I EA V + + DV
Sbjct: 127 SLIHMYTSSGSIVEAECVLREFSEENTLAKNSMISGYLSKGHVDKARAMFDQMKAKDVAS 186
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
W+A+I G +G E+L LF +M + P+E + LLSACAH G + + + +
Sbjct: 187 WSAIITGCTKNGMHTEALALFEDMMVSHTLPNESALVSLLSACAHLGALHQGRWIHAYID 246
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
+ G ++D ++ G + Y+F +MP + G++++G +G+
Sbjct: 247 RIGADMSIRLSTALIDMYAKCGDIQSGYKFFRKMPRRDIVT-WGAIISGFAIYGQ 300
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/438 (35%), Positives = 247/438 (56%), Gaps = 35/438 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S S G ++ +V + + W +I G+ ++ + ++++ FV+M R+GV+ + +
Sbjct: 146 SGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEM 205
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + KA+ + ++H + G D+FI +SL+ MYG
Sbjct: 206 TVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYG-------------- 251
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
KCG + A++VF+ MP RNVV+W+ALI GYV+ +++ + +F
Sbjct: 252 -----------------KCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVF 294
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
EEM NE TL SVL ACAH+GAL +GR + Y+I + + + T+LID YAKC
Sbjct: 295 EEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKC 354
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G ++EA++VF + + +V W AMI G A HG+ +++LF M ++P+E+TF+
Sbjct: 355 GCLEEAILVFERLR--EKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIV 412
Query: 304 LLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+LSACAHGGLV E F S+ +R + PK++HYACMVD R G + EA I +MP+E
Sbjct: 413 VLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPME 472
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
PT ++ G+L C+ H +L + ++++LQP H GRY L+N+Y+ + WD+ R
Sbjct: 473 PTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDDVARVR 532
Query: 423 EAMETRGVKKYPGWSFVE 440
+ M+ + V K PG S++E
Sbjct: 533 KQMKDQQVVKSPGCSWIE 550
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 172/368 (46%), Gaps = 38/368 (10%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISL--FVKMLRAGVSPDHLTYPFLAKA 72
Y+ ++L + P I W++++ +S N+ +S + +M R GV P T+P L KA
Sbjct: 54 YARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRLSFLSYRQMRRNGVVPSRHTFPPLLKA 113
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+L + HA I K G++SDLF+ NSLI
Sbjct: 114 VFKL-RDANPFQFHAHILKFGFDSDLFVRNSLI--------------------------- 145
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
GY+ CG +VF+ +++VVSW+A+IDG+V+ EA+ F EM+ G
Sbjct: 146 ----SGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVA 201
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG-LSLTLPLQTSLIDMYAKCGAIKEALI 251
ANE+T+VSVL A + GR + + ++ G + + + +SL+DMY KCG +A
Sbjct: 202 ANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQK 261
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF E +V+ W A+I G ++ + +F EM + P+E T +LSACAH
Sbjct: 262 VFD--EMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHV 319
Query: 312 GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
G + + K + + ++D ++ G + EA + + E ++
Sbjct: 320 GALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAI-LVFERLREKNVYTWTAM 378
Query: 372 LTGCMNHG 379
+ G HG
Sbjct: 379 INGFAAHG 386
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 237/431 (54%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+Y+ V +S + WNT+I Y + +++ LF +M + V PD + +
Sbjct: 163 GRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIV 222
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A GR A++ + + D + +L+ MY G + A E F M +
Sbjct: 223 SACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLF 282
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+M+ GY+K G ++ AR +F+ +++V W+ +I Y + +EAL +FEEM G
Sbjct: 283 VSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSG 342
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K + VT++SV+ AC +LG LD+ + + RY GL LP+ +LI+MYAKCG + A
Sbjct: 343 IKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAAR 402
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + +V+ W++MI AMHG +SL LF +M+ + P+E+TF+G+L C+H
Sbjct: 403 DVFEKMPTR--NVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSH 460
Query: 311 GGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E F S+ + PK EHY CMVD RA + EA E I MP+ P + G
Sbjct: 461 SGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWG 520
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SL++ C HG+L+L E+ K++++L+PDHDG V +SN+YA RWD R R ME +
Sbjct: 521 SLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKK 580
Query: 430 VKKYPGWSFVE 440
V K G S ++
Sbjct: 581 VFKEKGLSRID 591
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/398 (23%), Positives = 171/398 (42%), Gaps = 66/398 (16%)
Query: 15 YSCKVLSHLSN-PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS 73
Y+ + S +S P +N+++R S+S P +I + ++ G D +++P + KA
Sbjct: 65 YALNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAV 124
Query: 74 GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
+++ + +H K SD F+ L
Sbjct: 125 SKVSALFEGMELHGFAFKIATLSDPFVETGL----------------------------- 155
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
+D YA CG +N AR VF+ M +R+VV+W+ +I+ Y + G EA +FEEM+D
Sbjct: 156 --MDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMP 213
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA------------ 241
+E+ L +++ AC G + R + ++I+ + + L T+L+ MYA
Sbjct: 214 DEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFF 273
Query: 242 -------------------KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKES 282
K G + +A ++F E D++ W MI A +E+
Sbjct: 274 RKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTE--MKDLVCWTTMISAYAESDHPQEA 331
Query: 283 LELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDA 342
L +F EM GI PD +T L ++SAC + G + +A + + G+ +++
Sbjct: 332 LRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINM 391
Query: 343 LSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
++ G + A + +MP S S++ HG+
Sbjct: 392 YAKCGGLDAARDVFEKMPTRNVVS-WSSMINAFAMHGE 428
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 146/305 (47%), Gaps = 39/305 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S S G +D + + + W T+I Y++S +P +++ +F +M +G+ PD +
Sbjct: 289 SGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVV 348
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T + A L + A VH G ES L I N+LI+MY CG + AR+VF+ M
Sbjct: 349 TMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKM 408
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
PT+ VSW+SM++ +A GE + ++L +F
Sbjct: 409 PTRNVVSWSSMINAFAMHGEAS-------------------------------DSLSLFA 437
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKC 243
+M+ + NEVT V VL C+H G +++G+ + M D+ ++ + ++D++ +
Sbjct: 438 QMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRA 497
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLEL--FTEMQIVGITPDEITF 301
++EAL V + +V+IW +++ +HG LEL +I+ + PD
Sbjct: 498 NLLREALEVIESM-PMAPNVVIWGSLMSACRVHG----ELELGELAAKRILKLEPDHDGA 552
Query: 302 LGLLS 306
L L+S
Sbjct: 553 LVLMS 557
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/445 (35%), Positives = 247/445 (55%), Gaps = 9/445 (2%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SA + LG+ D++ ++ + + + R + S ++I++F M+ GV PD+
Sbjct: 52 LSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDN 111
Query: 64 LTYPF----LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
+ A A+R +HA + +G D+F+S LI +YG G++ +R
Sbjct: 112 VAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRR 171
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD MP++ +++WN+ML YA+ G+++ A ++F MP R+VVSW+ ++ GY G +EA
Sbjct: 172 VFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREA 231
Query: 180 LVIFEEMRDVGSKA---NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
L +F +M S A N T+ ++L ACA G L+ G + Y+ ++ L L
Sbjct: 232 LGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCL 291
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
IDMY KCG+I AL VF + + D+ W +I GLAMHG ++L +F MQ GI P
Sbjct: 292 IDMYCKCGSIDNALQVFEKAPR-KKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICP 350
Query: 297 DEITFLGLLSACAHGGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
D++T +G+L+ACAHGGLV E YF+ K + PK EHY CM+D L R G++ EAY
Sbjct: 351 DDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRIGRLQEAYSM 410
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
I MP++P + G+ L+ C HG ++L +I ++L L PD V LS++YA + W
Sbjct: 411 IRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDW 470
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
R M + VKK PG S +E
Sbjct: 471 IGLARERREMNSMQVKKTPGCSSIE 495
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 119/284 (41%), Gaps = 36/284 (12%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
++L YA G + AR++F+ MPE+ +V +A+ +V G +A+ +F +M G
Sbjct: 49 TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 108
Query: 193 ANEVTLVSVLCACAHLGA----LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
+ V + L AC G+ + G+M+ ++ G+ + + T LI +Y + G +
Sbjct: 109 PDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPV 168
Query: 249 ALIVF---------------HGVEKH--------------QSDVLIWNAMIGGLAMHGFV 279
+ VF H +H + DV+ WN ++ G + G
Sbjct: 169 SRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRC 228
Query: 280 KESLELFTEM---QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHY 336
+E+L LF +M + P+ T +L ACA G + + + + M
Sbjct: 229 REALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLD 288
Query: 337 ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
C++D + G + A + + P + +++ G HG+
Sbjct: 289 RCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGR 332
>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 526
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 167/435 (38%), Positives = 248/435 (57%), Gaps = 12/435 (2%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y+ + HL+N F NT+IRGY + ++P ++S ++ ML+ GV+ ++ T+P L KA
Sbjct: 58 YARSIFRHLTNRNTFMHNTMIRGYLQCRSPLHAVSCYLSMLQNGVAVNNYTFPPLIKACI 117
Query: 75 RLAKRE----LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
L + VH + K G +D ++ ++ I Y ++ AR +FD K V
Sbjct: 118 ALLPSSPSNIVGRLVHGHVVKFGLRNDPYVVSAFIEFYSVSREVDTARVLFDETSYKDVV 177
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+M+DGY K G + AR+VF+ MPERN VSWSA++ Y + D+KE L +F EM++ G
Sbjct: 178 LGTAMVDGYGKMGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNEG 237
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
++ NE LV+VL ACAHLGAL QG + Y L L T+L+DMY+KCG ++ AL
Sbjct: 238 TEPNESILVTVLTACAHLGALTQGLWVHSYARRFHLESNPILATALVDMYSKCGCVESAL 297
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + D WNAMI G A++G +SL+LF +M P+E TF+ +L+AC H
Sbjct: 298 SVFDCIV--DKDAGAWNAMISGEALNGDAGKSLQLFRQMAASRTKPNETTFVAVLTACTH 355
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT---AS 366
+V + + F+ + G+VP+ EHYAC++D LSRAG V EA +F+ + T A+
Sbjct: 356 AKMVQQGLWLFEEMSSVYGVVPRMEHYACVIDLLSRAGMVEEAEKFMEEKMGGLTAGDAN 415
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWD-EARTTREAM 425
+ G+LL C H + + V KKLV++ G +V N+Y WD EA R +
Sbjct: 416 VWGALLNACRIHKNIHVGNRVWKKLVDMGVTDCGTHVLTYNIYR-EAGWDVEANKVRSRI 474
Query: 426 ETRGVKKYPGWSFVE 440
E G+KK PG S +E
Sbjct: 475 EEVGMKKKPGCSIIE 489
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/378 (22%), Positives = 151/378 (39%), Gaps = 47/378 (12%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+GN+ + +V + W+ ++ YS+ + + ++LF +M G P+ +
Sbjct: 189 MGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNEGTEPNESILVTV 248
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L + VH+ + ES+ ++ +L+ MY CG + A VFD + K +
Sbjct: 249 LTACAHLGALTQGLWVHSYARRFHLESNPILATALVDMYSKCGCVESALSVFDCIVDKDA 308
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+WN+M+ G A +N GD ++L +F +M
Sbjct: 309 GAWNAMISGEA----LN---------------------------GDAGKSLQLFRQMAAS 337
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKE 248
+K NE T V+VL AC H + QG + M G+ + +ID+ ++ G ++E
Sbjct: 338 RTKPNETTFVAVLTACTHAKMVQQGLWLFEEMSSVYGVVPRMEHYACVIDLLSRAGMVEE 397
Query: 249 ALIVFHGVEK----HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
A EK D +W A++ +H + ++ ++ +G+T D T +
Sbjct: 398 AEKFME--EKMGGLTAGDANVWGALLNACRIHKNIHVGNRVWKKLVDMGVT-DCGTHVLT 454
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
+ G +EA + + GM K VD E EF+ P
Sbjct: 455 YNIYREAGWDVEANKVRSRIEEVGMKKKPGCSIIEVD--------NEVEEFLAGDHSHPQ 506
Query: 365 ASMLGSLLTGCMNHGKLD 382
A + LL + G L+
Sbjct: 507 AQEMCKLLDSILKMGTLE 524
>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
Length = 500
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 263/496 (53%), Gaps = 72/496 (14%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+ + Y+C L +P + WN +I+ + + + +++ +V + G D+ T+P L
Sbjct: 1 MAGLAYNCV----LPSPEMRQWNEIIKKHVLNGDAVQAMVTYVNVQEIGFHADNFTFPIL 56
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA+G + + +A+H Q K G+ S +F+ +L++MY S + A +VF+ MP K
Sbjct: 57 LKAAGSWSSPCIGLALHGQTIKAGFSSHVFVQTALLNMYRSHSCVADACKVFEKMPVKDV 116
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMP-------------------------------ER 158
V+WNS+LD YA +M+ A +VF MP E+
Sbjct: 117 VAWNSILDAYASTDQMDDALKVFNSMPLKDLSSFNIMISGYSSIGKTLSARSIFDNMAEK 176
Query: 159 NVVSWSALIDGYVKCGD-------------------------------YKEALVIFEEMR 187
++VSW+++I Y++ D Y E L +F+EM+
Sbjct: 177 DIVSWNSMISAYIQGEDMERACDLFREMPAKNIITWNTMVKGFLQNQLYAEVLDLFDEMK 236
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
+ +T+ VL ACAH G+L +G + Y ID GL+ + + T+LIDMYAKCG+I+
Sbjct: 237 TTNCLPDYLTVTGVLSACAHSGSLKKGTEVHIYAIDNGLASSPHVTTALIDMYAKCGSIQ 296
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
+ L VF+ + D+ WNA+I GLA+HG +L +F +M+ PD+ITF+GLLSA
Sbjct: 297 QGLQVFY--KSQVKDIYCWNALISGLALHGHGYAALNIFNKMRKNHTRPDDITFIGLLSA 354
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H GLV E F S+ K G+ PK EHY CMVD LSRA + A + I MP +P +
Sbjct: 355 CSHSGLVQEGSQLFYSMQKEFGISPKIEHYGCMVDLLSRARHLDCALQLIKTMPFKPGEA 414
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH--DGRYVGLSNVYAIFKRWDEARTTREA 424
+LG+LL+ C+ H L++ E V KLV + ++ DG + SN+YA +W+EA RE
Sbjct: 415 ILGALLSACIVHQDLEVGERV-VKLVSSRGNYLSDGELMMFSNLYASCGQWEEANKWREM 473
Query: 425 METRGVKKYPGWSFVE 440
M G+ K G+S VE
Sbjct: 474 MNDTGIVKTAGFSVVE 489
>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
Length = 723
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 155/433 (35%), Positives = 248/433 (57%), Gaps = 8/433 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + ++L + W ++I GYS++ P ++ F ML GV PD +
Sbjct: 183 GLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGAL 242
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT-KMS 129
A +L E +H + K + + +LI MY CGDI A+ VFD + +
Sbjct: 243 SACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKP 302
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
WN ++DGY K G +++AR +F+ M R+V++++++I GY+ G ++AL +F ++R
Sbjct: 303 EPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRH 362
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G +A+ T+VS+L ACA LGAL QGR + + + + + L T+L+DMY KCG + EA
Sbjct: 363 GMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEA 422
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VFH + + DV W+AMI GLA +G ++LE F +M+ G P +T++ +L+AC+
Sbjct: 423 TAVFHRMG--ERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACS 480
Query: 310 HGGLVMEAWYFF---KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
H L+ E F +SL K + P+ EHY CM+D L+R+G + EA + MP++P A
Sbjct: 481 HSSLLNEGRQHFNEMRSLHK--LHPQIEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAV 538
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ S+L+ C H +DLA + L++L P+ D YV L N+Y ++W EA+ R ME
Sbjct: 539 IWASILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWVEAKRIRMLME 598
Query: 427 TRGVKKYPGWSFV 439
+GVKK G+S +
Sbjct: 599 EQGVKKTAGYSSI 611
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 131/476 (27%), Positives = 210/476 (44%), Gaps = 79/476 (16%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRG-YSKSKNPNKSISLFVKMLRAGVSPDH 63
+ LS ++ Y + L +P F +T +R S + + + +M R GV
Sbjct: 43 NCLSAPRHLRYVLSLFDRLPHPTTFLHDTALRACLQASAGADHPVLILRRMRRGGVRMSA 102
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDL-FISNSLIHMYGSCGDIVYAREVFD 122
T+ F+ + A L +HA +T S ++N LIHMY S G AR FD
Sbjct: 103 FTFHFVFRCCAAGAGAGLCRMLHAACLRTMLPSAARIVANPLIHMYASLGLTDDARRAFD 162
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+P K +V W +++ G + G ++ AR++ PERNVVSW++LI GY + G +A+
Sbjct: 163 EVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYC 222
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F M G + +EV ++ L AC+ L L+ GR++ + K + +T L +LIDMYAK
Sbjct: 223 FNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAK 282
Query: 243 CGAIKEALIVFHGVEKHQS------------------------------DVLIWNAMIGG 272
CG I +A VF V + Q DV+ +N+MI G
Sbjct: 283 CGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITG 342
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA-----------HG---------- 311
G ++++L+LF +++ G+ D T + LL+ACA H
Sbjct: 343 YIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEED 402
Query: 312 --------------GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
G V EA F +G+R + ++ M+ L+ G +A E C
Sbjct: 403 VYLVTALVDMYMKCGRVDEATAVFHRMGERDV----HTWSAMIAGLAFNGMGMDALESFC 458
Query: 358 QMP---LEPTASMLGSLLTGC-----MNHGKLDLAEIVGKKLVELQPDHDGRYVGL 405
QM +PT+ ++LT C +N G+ E+ + Q +H G + L
Sbjct: 459 QMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDL 514
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 126/290 (43%), Gaps = 35/290 (12%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG++D + + + + +N++I GY S ++ LF+++ R G+ D+ T L
Sbjct: 315 LGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSL 374
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L A+HA I + E D+++ +L+ MY CG + A VF M
Sbjct: 375 LTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRM----- 429
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
ER+V +WSA+I G G +AL F +M+
Sbjct: 430 --------------------------GERDVHTWSAMIAGLAFNGMGMDALESFCQMKRD 463
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKE 248
G + VT ++VL AC+H L++GR M L + +ID+ A+ G + E
Sbjct: 464 GFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDE 523
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
A+ + + Q + +IW +++ +H + L ++ + P+E
Sbjct: 524 AMHLVQTMPM-QPNAVIWASILSACRVHKNI--DLARHAAEHLLKLAPEE 570
>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
Length = 588
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 172/510 (33%), Positives = 256/510 (50%), Gaps = 100/510 (19%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
F WN VI+ +S +P +++ F ML GVS D + + KA RL + + +H
Sbjct: 62 FLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGF 121
Query: 89 IAKTGYESDLFISNSLIHMYGSCGDIVYA------------------------------- 117
+ KTG SDLF+ N LI +Y CG + +A
Sbjct: 122 LRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSA 181
Query: 118 REVFDGMPTKMS----------------------------------VSWNSMLDGYAKCG 143
RE+FD MP +M +SWNS++DGY K G
Sbjct: 182 RELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHG 241
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGS---------- 191
M A+ +F +MP R+VV+W+ +IDGY K G +A +F++M RDV +
Sbjct: 242 RMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQ 301
Query: 192 --------------------KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
+E TLV VL A A LG L + M Y+++K L
Sbjct: 302 NKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGK 361
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
L +LIDMY+KCG+I++A++VF +E D WNAMIGGLA+HG + + ++ E++
Sbjct: 362 LGVALIDMYSKCGSIQQAMLVFERIENKSIDH--WNAMIGGLAIHGLGESAFDMLLEIER 419
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVT 350
I PD+ITF+G+L+AC+H GLV E F+ + ++ + P+ +HY CMVD LSR+G +
Sbjct: 420 RSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIE 479
Query: 351 EAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410
A I +MP+EP + + LT C +H + + E+V K L+ + YV LSN+YA
Sbjct: 480 LAKNLIEEMPMEPNDVIWRTFLTACSHHKEFETGEVVAKHLILQAGYNPSSYVLLSNMYA 539
Query: 411 IFKRWDEARTTREAMETRGVKKYPGWSFVE 440
F W +AR R M+ R ++K PG S++E
Sbjct: 540 SFGMWKDARRVRTMMKERELQKVPGCSWIE 569
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 158/423 (37%), Positives = 232/423 (54%), Gaps = 39/423 (9%)
Query: 24 SNPR----IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKR 79
S PR + WNT+I GY + PNK++ F +M + V D +T + A R
Sbjct: 153 SAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAM 212
Query: 80 ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY 139
++ HA + G+E + +I +SL+ MY
Sbjct: 213 KVGSLCHALVVLNGFEINCYIGSSLVSMY------------------------------- 241
Query: 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLV 199
AKCG + AR+VF MPERNVV W+++I G + G +KEA+ +F +M+ G KA++ T+
Sbjct: 242 AKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIA 301
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
+V+ +C +GALD GR + Y GL L ++ SLIDMY+KCG + +A +FHG+ K
Sbjct: 302 TVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKR 361
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACAHGGLVMEAW 318
DV W MI G AM+G E+L+LF +M+ + P+E+ FLG+L+AC+HGGLV + +
Sbjct: 362 --DVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGY 419
Query: 319 YFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
+ F + K +VP+ EHY CMVD L RA + EA +FI MP+ P + SLL C
Sbjct: 420 HHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRA 479
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
G++ LAE +++ +L+P G +V LSNVYA RW + R M K PG S
Sbjct: 480 SGQVGLAEYAAERIEQLEPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCS 539
Query: 438 FVE 440
F+E
Sbjct: 540 FIE 542
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 143/299 (47%), Gaps = 31/299 (10%)
Query: 57 AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
A ++ D+ + A+ R+ ++ HA K SD F+ N+LI+MY SC
Sbjct: 87 ANMTLDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPAS 146
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
AR V D P W S +VVSW+ +I GY++ G
Sbjct: 147 ARLVLDSAP-----RWAS------------------------DVVSWNTIIAGYIRGGMP 177
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
+AL F +M + +EVTL++VL ACA GA+ G + ++ G + + +SL
Sbjct: 178 NKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSL 237
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
+ MYAKCG ++EA VF+ + + +V+ W +MI G G KE+++LF +MQI G+
Sbjct: 238 VSMYAKCGMVEEARRVFNRMP--ERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKA 295
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
D+ T ++S+C G + Y G+ + ++D S+ G V +AY+
Sbjct: 296 DDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQI 354
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 32/205 (15%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + +V + + + W ++I G ++S +++ LF M AGV D T +
Sbjct: 245 GMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVV 304
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ G++ +L +HA G +L + NSLI MY CGD+ A ++F G+ TK
Sbjct: 305 SSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGL-TK--- 360
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DV 189
R VF +W+ +I G+ G EAL +F +M +
Sbjct: 361 ------------------RDVF---------TWTVMIMGFAMNGLCVEALDLFAQMEGED 393
Query: 190 GSKANEVTLVSVLCACAHLGALDQG 214
NEV + VL AC+H G ++QG
Sbjct: 394 KVMPNEVIFLGVLTACSHGGLVEQG 418
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 1/181 (0%)
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
A A + +LD G + L+ + +LI+MY+ C A +V + SDV
Sbjct: 102 AAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWASDV 161
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
+ WN +I G G ++L+ F +M + DE+T L +L ACA G +
Sbjct: 162 VSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHAL 221
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+ G + +V ++ G V EA +MP E S++ GC G+
Sbjct: 222 VVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMP-ERNVVCWTSMIAGCTQSGRFKE 280
Query: 384 A 384
A
Sbjct: 281 A 281
>gi|242045040|ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
gi|241923768|gb|EER96912.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
Length = 573
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 162/402 (40%), Positives = 228/402 (56%), Gaps = 5/402 (1%)
Query: 43 NPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGY-ESDLFIS 101
NP+ ++ LF +LR+G PD Y + R R A +HA AK G+ S +
Sbjct: 58 NPHLALRLFDHLLRSGADPDPAAYELALASCARGKDRATAAQLHAHAAKRGFLASHRRVR 117
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK-CGEMNMARQVFELMPERNV 160
L+H Y CG + +AR VFDG V+WN +L GYA+ G+ ++ R F MP R+
Sbjct: 118 CRLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDADLLRDFFARMPSRDS 177
Query: 161 VSWSALIDGYVKCGDYKEALVIFEEM-RDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
VSW+ ++ V G+Y EA+ +F EM + + VTLVSV+ A A+LGAL QG
Sbjct: 178 VSWNTVLSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAQGLWAHA 237
Query: 220 YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
Y+I KG+ + L ++LI+MY+KCG ++ A+ VF V +S + WNAM+ G +G
Sbjct: 238 YVIRKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRS-LDTWNAMLAGFTANGCS 296
Query: 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYAC 338
+L LFT M+ G+ P++ITF +L+AC+HGGLV E F+ + + G+ P HY C
Sbjct: 297 GRALALFTRMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAHYGC 356
Query: 339 MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398
MVD RAG +A E I MP+EP ASML +LL C H L+L + G +L+E P+
Sbjct: 357 MVDLFCRAGMFEKAEEIIQIMPMEPDASMLKALLGACRTHKNLELGKKAGHRLIEAAPND 416
Query: 399 DGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
YV LSN+YA+ W R+ M RGV K PG S VE
Sbjct: 417 HAGYVLLSNIYALDGNWGRVHKVRKLMLDRGVLKTPGSSSVE 458
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 130/315 (41%), Gaps = 71/315 (22%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSK------------SKNPNK------- 46
A + G + ++ +V ++ + WN ++RGY++ ++ P++
Sbjct: 123 AYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDADLLRDFFARMPSRDSVSWNT 182
Query: 47 -------------SISLFVKMLRAG-VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKT 92
+I++F +ML + PD +T + A L + HA + +
Sbjct: 183 VLSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAQGLWAHAYVIRK 242
Query: 93 GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV-SWNSMLDGYAKCGEMNMARQV 151
G E + +S++LI+MY CG + A VFD + K S+ +WN+ML G+ G
Sbjct: 243 GVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLDTWNAMLAGFTANG-------- 294
Query: 152 FELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGAL 211
C AL +F M G N++T +L AC+H G +
Sbjct: 295 ---------------------CS--GRALALFTRMETTGLMPNKITFNCILNACSHGGLV 331
Query: 212 DQG-RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
++G R R G+ + ++D++ + G ++A + + + D + A++
Sbjct: 332 EEGMRCFQRMSRVYGIEPDIAHYGCMVDLFCRAGMFEKAEEIIQ-IMPMEPDASMLKALL 390
Query: 271 GGLAMHGFVKESLEL 285
G H ++LEL
Sbjct: 391 GACRTH----KNLEL 401
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 153/424 (36%), Positives = 243/424 (57%), Gaps = 3/424 (0%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V + + W ++ Y ++N +++ L KM R+ V PD + + G
Sbjct: 49 RVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNKMKRSRVVPDQVILATVLSTCGHTR 108
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+H+ I + D +S++LI+MY SC D+ A +++ GM K VS +M+
Sbjct: 109 HLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMDMEMADKIYSGMQRKDLVSSTAMVC 168
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
GYAK G++ +AR +F M E++VVSWSA+I Y + E L +F +M+ G +E+T
Sbjct: 169 GYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEIT 228
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
++SV+ ACA++G+LD+ R + + + G L + +LIDM++KCG++ AL +F+ +
Sbjct: 229 MLSVISACANIGSLDKARWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMP 288
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+ +V+ W +MI AMHG +L LF +M+ G+ P+ +TFL LL AC H GLV E
Sbjct: 289 R--KNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYACCHAGLVYEG 346
Query: 318 WYFFKS-LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
F+ L + + PK EHY CMVD + RA + EA + I M + P ++ GSLL C
Sbjct: 347 RSLFECMLQEYRIEPKHEHYGCMVDLMGRAKLMQEAVDLIESMHIRPNVAIWGSLLAACW 406
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436
HG ++L E KK++EL P+HDG YV LSN++A W+ A+ R M+ GV K G+
Sbjct: 407 MHGDIELGEFAAKKILELDPNHDGAYVLLSNIHAKSGNWNNAQKLRVMMKVHGVSKETGY 466
Query: 437 SFVE 440
S++E
Sbjct: 467 SWLE 470
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 134/319 (42%), Gaps = 60/319 (18%)
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+A+ R + H + G + D F+ +L+ Y +C + AR VFDGMP + V
Sbjct: 1 RAAARARWTDTVRGTHGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLV 60
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W ML D Y +Y+E L++ +M+
Sbjct: 61 AWGVML-------------------------------DSYFNTQNYRETLLLLNKMKRSR 89
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
++V L +VL C H L G+ + Y+ + + L ++LI+MYA C ++ A
Sbjct: 90 VVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMDMEMAD 149
Query: 251 IVFHGVEKH-----------------------------QSDVLIWNAMIGGLAMHGFVKE 281
++ G+++ + DV+ W+AMI A + E
Sbjct: 150 KIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSE 209
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
L LF +MQ G++PDEIT L ++SACA+ G + +A + +G G ++D
Sbjct: 210 VLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSICNALID 269
Query: 342 ALSRAGQVTEAYEFICQMP 360
S+ G +T A MP
Sbjct: 270 MFSKCGSLTLALNMFNAMP 288
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 137/297 (46%), Gaps = 35/297 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + + +H++ + W+ +I Y+++ P++ ++LF KM GVSPD +T +
Sbjct: 174 GKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVI 233
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + + A +H+ + G+ L I N+LI M+ CG + A +F+ MP K +
Sbjct: 234 SACANIGSLDKARWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRKNVI 293
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W SM+ +A GD AL +F +M+ G
Sbjct: 294 TWTSMIAAFA-------------------------------MHGDGPSALTLFGQMKGEG 322
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
+ N VT + +L AC H G + +GR + M+ + + ++D+ + ++EA
Sbjct: 323 VEPNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVDLMGRAKLMQEA 382
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ + + + +V IW +++ MHG ++ L F +I+ + P+ LLS
Sbjct: 383 VDLIESMHI-RPNVAIWGSLLAACWMHGDIE--LGEFAAKKILELDPNHDGAYVLLS 436
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 158/423 (37%), Positives = 232/423 (54%), Gaps = 39/423 (9%)
Query: 24 SNPR----IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKR 79
S PR + WNT+I GY + PNK++ F +M + V D +T + A R
Sbjct: 65 SAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAM 124
Query: 80 ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY 139
++ HA + G+E + +I +SL+ MY
Sbjct: 125 KVGSLCHALVVLNGFEINCYIGSSLVSMY------------------------------- 153
Query: 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLV 199
AKCG + AR+VF MPERNVV W+++I G + G +KEA+ +F +M+ G KA++ T+
Sbjct: 154 AKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIA 213
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
+V+ +C +GALD GR + Y GL L ++ SLIDMY+KCG + +A +FHG+ K
Sbjct: 214 TVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKR 273
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACAHGGLVMEAW 318
DV W MI G AM+G E+L+LF +M+ + P+E+ FLG+L+AC+HGGLV + +
Sbjct: 274 --DVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGY 331
Query: 319 YFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
+ F + K +VP+ EHY CMVD L RA + EA +FI MP+ P + SLL C
Sbjct: 332 HHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRA 391
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
G++ LAE +++ +L+P G +V LSNVYA RW + R M K PG S
Sbjct: 392 SGQVGLAEYAAERIEQLEPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCS 451
Query: 438 FVE 440
F+E
Sbjct: 452 FIE 454
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 140/294 (47%), Gaps = 31/294 (10%)
Query: 62 DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121
D+ + A+ R+ ++ HA K SD F+ N+LI+MY SC AR V
Sbjct: 4 DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 63
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
D P W S +VVSW+ +I GY++ G +AL
Sbjct: 64 DSAP-----RWAS------------------------DVVSWNTIIAGYIRGGMPNKALQ 94
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
F +M + +EVTL++VL ACA GA+ G + ++ G + + +SL+ MYA
Sbjct: 95 SFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYA 154
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
KCG ++EA VF+ + + +V+ W +MI G G KE+++LF +MQI G+ D+ T
Sbjct: 155 KCGMVEEARRVFNRMP--ERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATI 212
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
++S+C G + Y G+ + ++D S+ G V +AY+
Sbjct: 213 ATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQI 266
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 32/205 (15%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + +V + + + W ++I G ++S +++ LF M AGV D T +
Sbjct: 157 GMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVV 216
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ G++ +L +HA G +L + NSLI MY CGD+ A ++F G+ TK
Sbjct: 217 SSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGL-TK--- 272
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DV 189
R VF +W+ +I G+ G EAL +F +M +
Sbjct: 273 ------------------RDVF---------TWTVMIMGFAMNGLCVEALDLFAQMEGED 305
Query: 190 GSKANEVTLVSVLCACAHLGALDQG 214
NEV + VL AC+H G ++QG
Sbjct: 306 KVMPNEVIFLGVLTACSHGGLVEQG 330
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 1/181 (0%)
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
A A + +LD G + L+ + +LI+MY+ C A +V + SDV
Sbjct: 14 AAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWASDV 73
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
+ WN +I G G ++L+ F +M + DE+T L +L ACA G +
Sbjct: 74 VSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHAL 133
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+ G + +V ++ G V EA +MP E S++ GC G+
Sbjct: 134 VVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMP-ERNVVCWTSMIAGCTQSGRFKE 192
Query: 384 A 384
A
Sbjct: 193 A 193
>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 159/435 (36%), Positives = 248/435 (57%), Gaps = 36/435 (8%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G++D++ +V + + + WNT+I +++ N+++ L ++M R G T
Sbjct: 110 SKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTIS 169
Query: 68 -FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
L + + A E + +HA K + ++F++ +L
Sbjct: 170 SVLCACAAKCALSECQL-LHAFAIKAAMDLNVFVATAL---------------------- 206
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
LD YAKCG M A VFE MP+R+VV+WS++ GYV+ Y++AL +F +
Sbjct: 207 ---------LDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKA 257
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ G K ++ + SV+CACA L A+ +G+ M + G + + +SLIDMYAKCG I
Sbjct: 258 WETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGI 317
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+E+ VF VEK +V++WNAMI GL+ H E + LF +MQ +G++P+++TF+ +LS
Sbjct: 318 EESYKVFRDVEKR--NVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLS 375
Query: 307 ACAHGGLVMEAWYFFKSLGKRG-MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC H GLV + +F + K + P HY+CMVD LSRAGQ+ EAY+ I ++P +A
Sbjct: 376 ACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASA 435
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
SM GSLL C HG L+LAE+ KKL +++P + G Y+ LSN+YA +WDE R+ +
Sbjct: 436 SMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLL 495
Query: 426 ETRGVKKYPGWSFVE 440
+ VKK G S++E
Sbjct: 496 KESDVKKERGKSWIE 510
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 36/281 (12%)
Query: 77 AKRELAV---AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
AKR+L + A HAQI G ++DL SN LI+MY
Sbjct: 75 AKRKLLLQGKACHAQILLMGLKTDLLTSNILINMY------------------------- 109
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
+KCG ++ ARQVF+ MP R++VSW+ +I + G+ EAL + +M+ G+
Sbjct: 110 ------SKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPF 163
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+E T+ SVLCACA AL + +++ + I + L + + T+L+D+YAKCG +K+A+ VF
Sbjct: 164 SEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVF 223
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313
+ V+ W++M G + +++L LF + G+ D+ ++ ACA
Sbjct: 224 ESMP--DRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAA 281
Query: 314 VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
++E L K G + ++D ++ G + E+Y+
Sbjct: 282 MIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYK 322
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 193 ANEVTLV-SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
A V+ V +L CA L QG+ ++ GL L LI+MY+KCG++ A
Sbjct: 61 ATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQ 120
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF E ++ WN MIG L +G E+L+L +MQ G E T +L ACA
Sbjct: 121 VFD--EMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACA 176
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 170/438 (38%), Positives = 242/438 (55%), Gaps = 42/438 (9%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+ + KV ++ + WN +I GY ++ +++ LF +M+R V PD T +
Sbjct: 144 GDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVV 203
Query: 71 KASGRLAKRELAVAVHAQIAKT----GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
A + EL VH+ + G+ S L I N+LI
Sbjct: 204 SACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALI--------------------- 242
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
D Y+KCG++ A +FE + ++VVSW+ LI GY YKEAL++F+EM
Sbjct: 243 ----------DLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEM 292
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKC 243
G N+VTL+SVL ACAHLGA+D GR + Y IDK G++ L+TSLIDMYAKC
Sbjct: 293 LRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVY-IDKKLKGVTNETSLRTSLIDMYAKC 351
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G I+ A VF+ + + WNAMI G AMHG + +LF+ M+ + PD+ITF+G
Sbjct: 352 GDIEAAHQVFNSMLYRS--LSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVG 409
Query: 304 LLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
LLSAC+H GL+ FKS+ + + PK EHY CM+D L +G EA E I MP+E
Sbjct: 410 LLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPME 469
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P + SLL C HG L+LAE +KL++++P++ G YV LSN+YA RW++ R
Sbjct: 470 PDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVR 529
Query: 423 EAMETRGVKKYPGWSFVE 440
+ +G+KK PG S +E
Sbjct: 530 GVLNGKGMKKVPGCSSIE 547
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/407 (33%), Positives = 228/407 (56%), Gaps = 16/407 (3%)
Query: 9 YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPF 68
+ + Y+ V + P + WNT++RG++ S +P ++ ++V+M+ G P+ ++PF
Sbjct: 10 HFDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPF 69
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
L K+ + E +HAQ+ K G D ++ SLI MY G + AR+VFD +
Sbjct: 70 LLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRD 129
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
VS +++ GYA G+ AR+VF+ + ER+VVSW+A+I GYV+ G Y+EAL +F+EM
Sbjct: 130 VVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMR 189
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYM----IDKGLSLTLPLQTSLIDMYAKCG 244
+ +E TLVSV+ ACA G+++ GR + ++ D G S +L + +LID+Y+KCG
Sbjct: 190 TNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCG 249
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
++ A +F G+ DV+ WN +IGG KE+L LF EM G P+++T L +
Sbjct: 250 DVETAFGLFEGLS--CKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSV 307
Query: 305 LSACAH-GGLVMEAW---YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
L ACAH G + + W Y K L +G+ ++ ++D ++ G + A++ M
Sbjct: 308 LPACAHLGAIDIGRWIHVYIDKKL--KGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSM- 364
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV--ELQPDHDGRYVGL 405
L + S +++ G HG+ + A + ++ ++PD D +VGL
Sbjct: 365 LYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPD-DITFVGL 410
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 140/302 (46%), Gaps = 37/302 (12%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+++ + + LS + WNT+I GY+ + +++ LF +MLR+G P+ +T
Sbjct: 246 SKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLL 305
Query: 68 FLAKASGRLAKRELAVAVHAQIAK--TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ A L ++ +H I K G ++ + SLI MY CGDI A +VF+ M
Sbjct: 306 SVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSML 365
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ SWN+M+ G+A G N A F+L F
Sbjct: 366 YRSLSSWNAMIFGFAMHGRANAA---FDL----------------------------FSR 394
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCG 244
MR + +++T V +L AC+H G LD GR + + M D L+ L +ID+ G
Sbjct: 395 MRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSG 454
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
KEA + H + + D +IW +++ HG + E E F + +++ I P+ L
Sbjct: 455 LFKEAEEMIHTMPM-EPDGVIWCSLLKACKKHGNL-ELAESFAQ-KLIKIEPENSGSYVL 511
Query: 305 LS 306
LS
Sbjct: 512 LS 513
>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
Length = 742
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 156/433 (36%), Positives = 250/433 (57%), Gaps = 8/433 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + ++L + W ++I GYS++ P ++ F ML GV+PD +
Sbjct: 185 GLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGAL 244
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT-KMS 129
A +L +L +H + + + +LI MY CGDI A+ VFD + +
Sbjct: 245 SACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKP 304
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
WN+++DGY K G +++AR +F+ M R+V++++++I GY+ G ++AL +F +MR
Sbjct: 305 EPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRH 364
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G +A+ T+VS+L ACA LGAL GR + + + + + L T+L+DMY KCG + EA
Sbjct: 365 GMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEA 424
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VFH + + DV W AMI GLA +G K++LE F +M+ G P +T++ +L+AC+
Sbjct: 425 TAVFHRMG--ERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACS 482
Query: 310 HGGLVMEAWYFF---KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
H L+ E F +SL K + P+ EHY CM+D L+R+G + EA + MP++P A
Sbjct: 483 HSSLLDEGRLHFNEMRSLHK--LHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAV 540
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ GS+L+ C H +DLA + L++L P+ D YV L N+Y ++W +A+ R ME
Sbjct: 541 IWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLME 600
Query: 427 TRGVKKYPGWSFV 439
RGVKK G+S +
Sbjct: 601 ERGVKKTAGYSSI 613
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 134/478 (28%), Positives = 213/478 (44%), Gaps = 81/478 (16%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRG-YSKSKNPNKSISLFVKMLRAGVSPDH 63
+ +S ++ Y + L + F ++T +R S + + L +M GV
Sbjct: 43 NTISAPRHLRYVLSLFDRLPHSTTFLFDTALRACLQASAGADHPVLLLRRMRSGGVRTGA 102
Query: 64 LTYPFL--AKASGRLAKRELAVAVHAQIAKTGYESDL-FISNSLIHMYGSCGDIVYAREV 120
T+ F+ A+G A+ L + +HA +T S ++N LIHMY S G AR
Sbjct: 103 FTFHFVFRCCAAGARARAGLCLMLHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRA 162
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD +P K +V W +++ G + G ++ AR++ PERNVVSW++LI GY + G +A+
Sbjct: 163 FDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAV 222
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
F M G +EV ++ L AC+ L LD GR++ + K + +T L +LIDMY
Sbjct: 223 YCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMY 282
Query: 241 AKCGAIKEALIVFHGVEKHQS------------------------------DVLIWNAMI 270
AKCG I +A VF V + Q DV+ +N+MI
Sbjct: 283 AKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMI 342
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA------HG------------- 311
G G ++++L+LF +M+ G+ D T + LL+ACA HG
Sbjct: 343 TGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVE 402
Query: 312 ----------------GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
G V EA F +G+R + + M+ L+ G +A E
Sbjct: 403 EDVYLGTALLDMYMKCGRVDEATAVFHRMGERDV----HTWTAMIAGLAFNGMGKDALES 458
Query: 356 ICQMP---LEPTASMLGSLLTGC-----MNHGKLDLAEIVGKKLVELQPDHDGRYVGL 405
CQM +PT+ ++LT C ++ G+L E+ + Q +H G + L
Sbjct: 459 FCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDL 516
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 128/290 (44%), Gaps = 35/290 (12%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG++D + + + + +N++I GY S ++ LF++M R G+ D+ T L
Sbjct: 317 LGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSL 376
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L A+HA I + E D+++ +L+ MY CG + A VF M
Sbjct: 377 LTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRM----- 431
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
ER+V +W+A+I G G K+AL F +M+
Sbjct: 432 --------------------------GERDVHTWTAMIAGLAFNGMGKDALESFCQMKRD 465
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKE 248
G + VT ++VL AC+H LD+GR+ M L + +ID+ A+ G + E
Sbjct: 466 GFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDE 525
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
A+ + + Q + +IW +++ +H + L ++ + P+E
Sbjct: 526 AMHLVQTMPM-QPNAVIWGSILSACRVHKNI--DLARHAAEHLLKLAPEE 572
>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 664
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 162/472 (34%), Positives = 254/472 (53%), Gaps = 39/472 (8%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S S L + DYS + + F +N +IRG +++ S+ F+ ML GV PD L
Sbjct: 68 SCSSLLKSPDYSLSIFRNSEERNPFVFNALIRGLTENARFECSVRHFILMLTLGVKPDRL 127
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD-- 122
T+PF+ K++ +L R L A+HA K + D F+ SL+ MY G + +A +VF+
Sbjct: 128 TFPFVLKSNSKLGFRWLGRALHAATLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEET 187
Query: 123 ---------------------------------GMPTKMSVSWNSMLDGYAKCGEMNMAR 149
MP + S SW++++ GY GE+N A+
Sbjct: 188 PDRIKKESILLWNVLVNGYCRAKDMQMATTLFRSMPERNSGSWSTLIKGYVDNGELNRAK 247
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
Q+FELMPE+NVVSW+ LI+G+ + GDY+ A+ + EM + G K NE T+ +VL AC+ G
Sbjct: 248 QLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSACSKSG 307
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
AL G + Y++D G+ L + TSL+DMYAKCG + A VF + + D+L W AM
Sbjct: 308 ALGSGIRIHGYILDNGIKLDRAIGTSLLDMYAKCGEVDCAATVFSNM--NHKDILSWTAM 365
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG-KRG 328
I G A+HG ++++ F +M G PDE+ FL +L+AC + G V FF S+
Sbjct: 366 IQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSGEVDLGLNFFDSMRLDYA 425
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
+ P +HY +VD L RAG++ EA+E + MP+ P + +L C H K + +IV
Sbjct: 426 IEPTLKHYVLVVDLLGRAGKLDEAHELVEYMPINPDLTTWAALYRACKAH-KSNRTDIVL 484
Query: 389 KKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ L+EL P+ G Y+ L +A ++ + R +++ + ++ G S++E
Sbjct: 485 QNLLELDPELRGSYIFLDKTHAAKGKYQDVEKRRLSLQKKVKERSMGCSYIE 536
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 160/426 (37%), Positives = 248/426 (58%), Gaps = 7/426 (1%)
Query: 20 LSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKR 79
L+ ++ W + I S++ ++ F M AGV P+H+T+ L G ++
Sbjct: 22 LNQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIALLSGCGDVSSG 81
Query: 80 ELAVA--VHAQIAKTGYE-SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
A+ +H K G + + + + +++ MY G AR VFD M K SV+WN+M+
Sbjct: 82 SEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFMEDKNSVTWNTMI 141
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
DGY + G++N A ++F+ MPER+++SW+A+I+G+VK G ++EAL F EM+ G K + V
Sbjct: 142 DGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYV 201
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
+++ L AC HLGAL G + RY++++ + + SLID+Y +CG ++ A VF +
Sbjct: 202 AIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFAREVFDKM 261
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
EK V+ WN++I G A +G ESL F +MQ G PD +TF G L+AC+H GLV E
Sbjct: 262 EKRT--VVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEE 319
Query: 317 AWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
+F+++ + + P+ EHY C+VD SRAG++ +A + MP++P ++GSLL C
Sbjct: 320 GLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMKPNEVVIGSLLAAC 379
Query: 376 MNHGKLD-LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
NHG LAE + K L +L YV LSN+YA W+ A R M+ G+KK P
Sbjct: 380 RNHGNNTVLAERLVKHLSDLNVKSHSNYVILSNMYAADGIWEGASKMRRKMKGLGLKKQP 439
Query: 435 GWSFVE 440
G+S VE
Sbjct: 440 GFSSVE 445
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 127/268 (47%), Gaps = 33/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + K+ + + W +I G+ K ++++ F +M +GV PD++
Sbjct: 148 GQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAAL 207
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L + VH + +++++ +SNSLI +Y CG + +AREVFD M + V
Sbjct: 208 AACTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVV 267
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS++ G+A G + E+LV F +M++ G
Sbjct: 268 SWNSVIVGFAANGNAH-------------------------------ESLVYFRKMQEEG 296
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
K + VT L AC+H+G +++G + M D +S + L+D+Y++ G +++A
Sbjct: 297 FKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDA 356
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
L V + ++V+I +++ HG
Sbjct: 357 LNVVQSMPMKPNEVVI-GSLLAACRNHG 383
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 159/431 (36%), Positives = 245/431 (56%), Gaps = 4/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ S + ++ + WN++I GY+++ + ++ +LF +M R G D T L
Sbjct: 94 GSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLGDEFTLASLL 153
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + E VH + +G DL + +L+ MY CGD+ AR F+ MP K V
Sbjct: 154 LACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVV 213
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW SML K G ++ AR F+ MPERN VSW+ +I YV+ G Y EAL ++++M+ G
Sbjct: 214 SWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHG 273
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+E TLV VL AC +G L G+M+ Y+ D + + L SL+DMYAKCG + A+
Sbjct: 274 PAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAI 333
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F E +V+ WN +IGGLAMHG +++ F M + +PD ITF+ LLS+C+H
Sbjct: 334 RLFR--EMCNRNVVSWNVIIGGLAMHGRALDAITFFRSM-VRNTSPDGITFVALLSSCSH 390
Query: 311 GGLVMEAWYFFKSLGKRGMVPKS-EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GGL+ ++F+S+ V EHYACMVD L R G + +A I +MP++P + G
Sbjct: 391 GGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWG 450
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C HG + + + V K+L+EL+ G +V +SN+ +W++ + R+ M+ RG
Sbjct: 451 ALLGACRIHGNVKIGKQVIKQLLELEGISGGLFVLISNLLYETNQWEDMKRLRKLMKERG 510
Query: 430 VKKYPGWSFVE 440
+K G S +E
Sbjct: 511 TRKDMGVSSIE 521
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 117/403 (29%), Positives = 171/403 (42%), Gaps = 62/403 (15%)
Query: 25 NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVA 84
+P +NT+ R Y S P +++ L MLR GV P+ T PF+ KA R + A+A
Sbjct: 7 DPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQAWDNALA 66
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VH K G+ +F++N+L+H Y S G + +R FD M + VSWNSM+ GYA
Sbjct: 67 VHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYA---- 122
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
+ GD +EA +F EMR G +E TL S+L A
Sbjct: 123 ---------------------------QAGDTREACALFGEMRRQGFLGDEFTLASLLLA 155
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH---------- 254
C+ G L+ GR++ M+ G + L L +L+DMY+KCG + A F
Sbjct: 156 CSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSW 215
Query: 255 -----GVEKHQS--------------DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
KH S + + WN MI G E+L+L+ +MQ G
Sbjct: 216 TSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPA 275
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
PDE T + +LSAC G + + P ++D ++ GQV A
Sbjct: 276 PDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRL 335
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGK-LDLAEIVGKKLVELQPD 397
+M S ++ G HG+ LD + PD
Sbjct: 336 FREMCNRNVVSW-NVIIGGLAMHGRALDAITFFRSMVRNTSPD 377
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 97/232 (41%), Gaps = 5/232 (2%)
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
L P+R V ++ + Y +EAL + M G NE TL V+ AC A D
Sbjct: 6 LDPDR--VMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQAWDN 63
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
+ + G + + +L+ YA G++ ++ F E +V+ WN+MIGG
Sbjct: 64 ALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFD--EMAGRNVVSWNSMIGGY 121
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS 333
A G +E+ LF EM+ G DE T LL AC+ G + + G
Sbjct: 122 AQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDL 181
Query: 334 EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
+VD S+ G + A MP++ S S+L HG +D A
Sbjct: 182 ILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWT-SMLCAQTKHGSVDAAR 232
>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
Length = 606
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 172/510 (33%), Positives = 257/510 (50%), Gaps = 100/510 (19%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
F WN VI+ +S K+P +++ LF ML GVS D + + KA RL + + +H
Sbjct: 80 FLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGF 139
Query: 89 IAKTGYESDLFISN-------------------------------SLIHMYGSCGDIVYA 117
+ KTG SDLF+ N S+I+ Y CG I A
Sbjct: 140 LRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESA 199
Query: 118 REVFDGMPTKMS----------------------------------VSWNSMLDGYAKCG 143
RE+FD MP +M +SWNSM+DGY K G
Sbjct: 200 RELFDLMPREMKNLISWNSMISGYAQTSEGVNIASKLFAEMPEKDLISWNSMIDGYVKHG 259
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGS---------- 191
+ A+ +F++MP R+VV+ + +IDGY K G +A +F++M RDV +
Sbjct: 260 RIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQ 319
Query: 192 --------------------KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
+E TLV +L A A LG L + M Y+++K L
Sbjct: 320 NKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGK 379
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
L +LIDMY+KCG+I+ A++VF G+E D WNAMIGGLA+HG + + + +++
Sbjct: 380 LGVALIDMYSKCGSIQHAMLVFEGIENKSIDH--WNAMIGGLAVHGLGESAFNMLLQIER 437
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVT 350
+ I PD+ITF+G+L+AC+H GLV E F+ + ++ + P+ +HY CMVD LSR+G +
Sbjct: 438 LSIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIE 497
Query: 351 EAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410
A I +MP+EP + + LT C +H + + E+V K L+ + YV LSN+YA
Sbjct: 498 LAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYA 557
Query: 411 IFKRWDEARTTREAMETRGVKKYPGWSFVE 440
F W + R R M+ R ++K PG S++E
Sbjct: 558 SFGMWKDVRRVRTMMKERKIEKIPGCSWIE 587
>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 742
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 155/439 (35%), Positives = 254/439 (57%), Gaps = 6/439 (1%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L+ +G +D + ++L+ + W +I GYS++ +++ F ML G++PD
Sbjct: 178 ISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDE 237
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIA-KTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
+T + A G+L ++H + K SD + +LI MY CGD AREVFD
Sbjct: 238 VTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVV-ALIDMYAKCGDTGRAREVFD 296
Query: 123 GMPT-KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
+ + WN+M+DGY K G +++AR +F+ M + +V+++++LI GY+ G +EAL+
Sbjct: 297 ALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALL 356
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+F +MR G A+ T+V +L A A LGAL QGR + + + + + L T+L+DMY
Sbjct: 357 LFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDMYM 416
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
KCG ++EA++ F + DV W+AMIGGLA +G K +LE F M+ G + +T+
Sbjct: 417 KCGRVEEAMVAFK--QMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTY 474
Query: 302 LGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+ +L+AC+H L+ E +F + + P+ EHY CM+D L R+G + EA + + MP
Sbjct: 475 IAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMP 534
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
++P A + S+L+ C H +DLA+ L++L+P D YV + N+Y ++W++A
Sbjct: 535 MQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDASK 594
Query: 421 TREAMETRGVKKYPGWSFV 439
R ME RGVKK G+S +
Sbjct: 595 IRRLMEKRGVKKTAGYSSI 613
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 154/304 (50%), Gaps = 8/304 (2%)
Query: 29 FYWNTVIRG-YSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRL-AKRELAVAVH 86
F ++T +R + S P++ I L+ +M V PD T+ FL K R A L +H
Sbjct: 68 FLFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLH 127
Query: 87 AQIAKTGYESDL-FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
A +T S + I++ +IHMY G AR FD K V+W +++ G AK G +
Sbjct: 128 AACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLL 187
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
+ AR++ P RNVV+W+ LI GY + G EA+ F M G +EVT++ +L AC
Sbjct: 188 DDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSAC 247
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
L L+ G + + DK + ++ L +LIDMYAKCG A VF + + +
Sbjct: 248 GQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQ-P 306
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
WNAMI G G V + LF +M+ D ITF L++ HGG + EA F +
Sbjct: 307 WNAMIDGYCKVGHVDIARSLFDQME----DHDVITFNSLITGYIHGGRLREALLLFTKMR 362
Query: 326 KRGM 329
+ G+
Sbjct: 363 RHGL 366
>gi|356507694|ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 535
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 171/487 (35%), Positives = 266/487 (54%), Gaps = 49/487 (10%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ FSALS +GN+ ++ + S F NT+IR ++ S P +++ ++ M V
Sbjct: 43 LIFFSALSPMGNLSHAHSLFLQTSMHNSFICNTMIRAFANSSYPLQALYIYNHMHTTNVV 102
Query: 61 PDHLTYPFLAKASGRLAK--------RELAV-----AVHAQIAKTGYESDLFISNSLIHM 107
DH TY F+ KA R K E + VH + K G + D I NSL+ M
Sbjct: 103 SDHFTYNFVLKACSRAHKFAQEFVKCDEFIIISKGGEVHCTVLKLGLDQDPSIQNSLLCM 162
Query: 108 YGSCGDIVYAREVFD-------------------------------GMPTKMSVSWNSML 136
Y CG + A+ +FD MP K VSWN+++
Sbjct: 163 YSQCGLVHVAQHLFDEISNRSLVSWNIMISAYDRVNDSKSADYLLESMPHKNVVSWNTVI 222
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
Y + G++ AR+VF++MP+R+ VSW++LI G V DY+ A+ +F EM++ + EV
Sbjct: 223 GRYIRLGDIEGARRVFQIMPQRDAVSWNSLIAGCVSVKDYEGAMGLFSEMQNAEVRPTEV 282
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
TL+SVL ACA GAL+ G + + G + L +L++MY+KCG + A VF+G+
Sbjct: 283 TLISVLGACAETGALEMGSKIHESLKACGHKIEGYLGNALLNMYSKCGKLNSAWEVFNGM 342
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ--IVGITPDEITFLGLLSACAHGGLV 314
+ WNAMI GLA+HG+ +E+L+LF+EM+ + + P+ +TFLG+L AC+H GLV
Sbjct: 343 RI--KTLSCWNAMIVGLAVHGYCEEALQLFSEMESGLDTVRPNRVTFLGVLIACSHKGLV 400
Query: 315 MEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
+A + F + K+ ++P +HY C+VD LSR G + EA++ I PL+ +A + +LL
Sbjct: 401 DKARWNFDHMAKQYKILPDIKHYGCIVDLLSRFGLLEEAHQMIKTAPLQNSAILWRTLLG 460
Query: 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
C G ++LA++ ++L +L DG YV LSN+YA +RWDE R M V K
Sbjct: 461 ACRTQGNVELAKVSFQQLAKLGRLTDGDYVLLSNIYAEAERWDEVERVRSEMIGLHVPKQ 520
Query: 434 PGWSFVE 440
+S ++
Sbjct: 521 VAYSQID 527
>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 611
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 155/439 (35%), Positives = 240/439 (54%), Gaps = 28/439 (6%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFLAK 71
++YS ++ H NP F +NT+IR S S P S+ F+++LR + PD ++ F K
Sbjct: 61 LNYSLRLFHHFPNPDTFMYNTLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLK 120
Query: 72 --ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A+ +KR+ + +H+ + G++ +F+ +LI MY CG YAR+VFD M
Sbjct: 121 GIANDGCSKRQ-GIQLHSHAFRHGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNV 179
Query: 130 VSWNSMLDGYAKCG-------EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
V+WN+++ +CG VF M R+ SWS +I G+ K G + +A
Sbjct: 180 VAWNAVVTACFRCGMWRVLGVSFGWREVVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGF 239
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F+E+ ++ +EV+L VL ACA GA + G+++ +M G + + +LID Y+K
Sbjct: 240 FKELLRDRNRPSEVSLTGVLSACAQAGAFEFGKILHGFMEKAGFLCIVSVNNALIDTYSK 299
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG + A +VF+ LAMHG E++ +F EM+ G+ PD +TF+
Sbjct: 300 CGNVDMAKLVFNI----------------SLAMHGRADEAIRVFHEMEESGVRPDGVTFI 343
Query: 303 GLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
LL AC+H GLV + F + G+ P EHY CMVD RA ++ +AYEFI QMP+
Sbjct: 344 SLLYACSHSGLVEQGCALFSKMRNFYGIEPAIEHYGCMVDLYGRAARLQKAYEFIRQMPI 403
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
P + +LL C HG ++LAE+V +L E+ P++ G +V LSNVYA+ +W +
Sbjct: 404 LPNVIIWRTLLGACSIHGNIELAELVKARLAEMDPNNSGDHVLLSNVYAVAGKWKDVAGI 463
Query: 422 REAMETRGVKKYPGWSFVE 440
R M + +KK PGWS +E
Sbjct: 464 RRTMIEQSMKKIPGWSMIE 482
>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
Length = 507
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 148/361 (40%), Positives = 228/361 (63%), Gaps = 7/361 (1%)
Query: 86 HAQIAKTGYES---DLFISNSLIHMYGSCGDIVYAREVFDGMPTKM-SVSWNSMLDGYAK 141
HA ++K+G+ + D +++++L+ Y G + +R VFD +P + + N++L YA+
Sbjct: 104 HALLSKSGHAASSGDPYLASALVASYARSGHLAESRRVFDELPPHSDAAARNALLSAYAR 163
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD-VGSKANEVTLVS 200
CG ++ A +F MP+RNV+SW+A++ GY + G ++EA+ F EM + G + NEVT+ S
Sbjct: 164 CGRVDDAESLFAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGVRPNEVTVSS 223
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
VL ACA +GAL GR + RY +G+ + + +L++MYAKCG+I+ A +VF G+ K Q
Sbjct: 224 VLPACAAVGALALGRKVERYARGRGMLTNVYVANALVEMYAKCGSIRRAWMVFRGIGK-Q 282
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
D+ WN+MI A+HG +E L LF ++++ G PD ITF+G++ AC HGGLV E
Sbjct: 283 RDLCSWNSMIMAFAVHGLWREVLGLFHKLRMTGAKPDGITFVGVILACTHGGLVDEGKLL 342
Query: 321 FKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
F S+ + G+ P+ EHY CMVD L RAG + EA I MP+EP A + G+LL C HG
Sbjct: 343 FNSMREEFGLKPRIEHYGCMVDLLGRAGLLKEADSLIASMPMEPDAVIWGALLGACSFHG 402
Query: 380 KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
L+LAE+ +KL+ L+P + V LSN+YA +WD + ++ + KK G+SF+
Sbjct: 403 NLELAEVAVEKLMRLEPQNTANLVILSNIYASHGKWDGVAQVWKLLKEKDHKKSAGYSFI 462
Query: 440 E 440
E
Sbjct: 463 E 463
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 150/326 (46%), Gaps = 41/326 (12%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPD 62
SA + G +D + + + + + + W ++ GY+++ +++ F++M GV P+
Sbjct: 158 LSAYARCGRVDDAESLFAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGVRPN 217
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
+T + A + L V G ++++++N+L+ MY CG I A VF
Sbjct: 218 EVTVSSVLPACAAVGALALGRKVERYARGRGMLTNVYVANALVEMYAKCGSIRRAWMVFR 277
Query: 123 GMPTKMSV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
G+ + + SWNSM+ +A G ++E L
Sbjct: 278 GIGKQRDLCSWNSMIMAFAVHGL-------------------------------WREVLG 306
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMY 240
+F ++R G+K + +T V V+ AC H G +D+G+++ M ++ GL + ++D+
Sbjct: 307 LFHKLRMTGAKPDGITFVGVILACTHGGLVDEGKLLFNSMREEFGLKPRIEHYGCMVDLL 366
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
+ G +KEA + + + D +IW A++G + HG + E E+ E +++ + P
Sbjct: 367 GRAGLLKEADSLIASMPM-EPDAVIWGALLGACSFHGNL-ELAEVAVE-KLMRLEPQNTA 423
Query: 301 FLGLLSA--CAHGGL--VMEAWYFFK 322
L +LS +HG V + W K
Sbjct: 424 NLVILSNIYASHGKWDGVAQVWKLLK 449
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 178/508 (35%), Positives = 261/508 (51%), Gaps = 80/508 (15%)
Query: 9 YLGN--IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
YL N +D + KV ++ + WN++I GY + K +S+FV+ML +G+ D T
Sbjct: 240 YLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATI 299
Query: 67 P--FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
F A RL L AVH K + + N+L+ MY CGD+ A+ VF M
Sbjct: 300 VSVFAGCADSRLIS--LGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREM 357
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE--------------------------R 158
+ VS+ SM+ GYA+ G A ++FE M E +
Sbjct: 358 SGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGK 417
Query: 159 NVVSW-------------SALIDGYVKCGDYKEALVIFEEMR--DVGS------------ 191
V W +AL+D Y KCG +EA ++F EMR D+ S
Sbjct: 418 RVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNC 477
Query: 192 ------------------KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
+E T+ VL ACA L A D+GR + Y++ G +
Sbjct: 478 YANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA 537
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
SL+DMYAKCGA+ A ++F + D++ W MI G MHGF KE++ LF +M+ G
Sbjct: 538 NSLVDMYAKCGALLLARLLFDDIT--SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAG 595
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEA 352
I PDEI+F+ LL AC+H GLV E W FF + + P EHYAC+VD L+R G +++A
Sbjct: 596 IEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKA 655
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412
Y FI MP+ P A++ G+LL GC H + LAE V +K+ EL+P++ G YV ++N+YA
Sbjct: 656 YRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEA 715
Query: 413 KRWDEARTTREAMETRGVKKYPGWSFVE 440
++W+E + R+ + RG++K PG S++E
Sbjct: 716 EKWEEVKRLRKRIGQRGLRKNPGCSWIE 743
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 167/370 (45%), Gaps = 73/370 (19%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + +V + + +WN ++ +KS + + SI LF KM+ +GV D T+ ++
Sbjct: 143 GDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVS 202
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
K+ L +H I K+G+ + NSL+ Y + AR+VFD M + +
Sbjct: 203 KSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVI 262
Query: 131 SWNSMLDGYAKCG-----------------EMNMAR--QVFELMPERNVVSW-------- 163
SWNS+++GY G E+++A VF + ++S
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFG 322
Query: 164 ------------SALIDGYVKCGDYK-------------------------------EAL 180
+ L+D Y KCGD EA+
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAV 382
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+FEEM + G + T+ +VL CA LD+G+ + ++ + + + + +L+DMY
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMY 442
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEI 299
AKCG+++EA +VF E D++ WN +IGG + + + E+L LF + + +PDE
Sbjct: 443 AKCGSMREAELVFS--EMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDER 500
Query: 300 TFLGLLSACA 309
T +L ACA
Sbjct: 501 TVACVLPACA 510
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 104/447 (23%), Positives = 175/447 (39%), Gaps = 82/447 (18%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK 91
NT +R + +S N ++ L + + P L A + K V I
Sbjct: 65 NTQLRRFCESGNLKNAVKLLHVSGKWDIDPRTLCSVLQLCADSKSLKD--GKEVDNFIRG 122
Query: 92 TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQV 151
G+ D + + L MY +CGD+ A VFD + + ++ WN +++ AK G+ + + +
Sbjct: 123 NGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGL 182
Query: 152 FELM----------------------------------------PERNVVSWSALIDGYV 171
F+ M ERN V ++L+ Y+
Sbjct: 183 FKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVG-NSLVAFYL 241
Query: 172 KCGDYKEALVIFEEM--RDV-----------------------------GSKANEVTLVS 200
K A +F+EM RDV G + + T+VS
Sbjct: 242 KNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVS 301
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
V CA + GR + + + S +L+DMY+KCG + A +VF E
Sbjct: 302 VFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFR--EMSG 359
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
V+ + +MI G A G E+++LF EM+ GI+PD T +L+ CA L+ E
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRV 419
Query: 321 FKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS---MLGSLLTGCMN 377
+ + + M ++D ++ G + EA +M ++ S ++G C
Sbjct: 420 HEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYA 479
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVG 404
+ L L ++ LVE + D R V
Sbjct: 480 NEALSLFNLL---LVEKRFSPDERTVA 503
>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 468
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 154/423 (36%), Positives = 226/423 (53%), Gaps = 35/423 (8%)
Query: 20 LSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKR 79
+H S P +F N++IR +S + P+ S++ M + P++ T+PFL K+
Sbjct: 66 FTHHSKPHVFICNSLIRAFSHNHTPHTPFSIYTHMHSNSILPNNFTFPFLLKSLADFKGL 125
Query: 80 ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY 139
+H + K G D+++ NSL L+ Y
Sbjct: 126 SEGQCIHTHVVKLGQFDDIYVQNSL-------------------------------LNVY 154
Query: 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLV 199
A CG+M + +VF+ MP R+VVSW+ LI GY Y +AL+ FE+M+ G N VT+V
Sbjct: 155 ASCGDMGLCMRVFDEMPHRDVVSWTVLITGYRSAERYDDALIAFEQMQYAGVVPNHVTMV 214
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
+ L ACA GAL+ G + ++ G + L TSLIDMY KCG I+E L+VF ++
Sbjct: 215 NALSACADFGALEMGVWIHEFIRRSGWEFDVILGTSLIDMYGKCGRIEEGLVVFRSMK-- 272
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
+ +V WN++I GLA+ E++ F M+ GI DE+T + +L AC+H G+V
Sbjct: 273 EKNVFTWNSLIKGLALARSGAEAVWWFYRMEQEGIKADEVTLIAVLCACSHSGMVQMGRQ 332
Query: 320 FFKSL--GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
F SL GK P +HYAC++D L+RAG + EA E + +MP EP M G+ L GC
Sbjct: 333 IFGSLMNGKYEFFPGVKHYACVIDLLARAGILQEAMEVMTRMPFEPNKVMWGAFLAGCRA 392
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
HG L+L+E +KLVEL+P + YV LSN+YA RW + R M+ G+ K G S
Sbjct: 393 HGDLELSEFAARKLVELEPGNGAYYVLLSNIYAEMGRWSDVEKVRRLMKEGGLTKDLGCS 452
Query: 438 FVE 440
+E
Sbjct: 453 SIE 455
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 162/431 (37%), Positives = 246/431 (57%), Gaps = 34/431 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
++DY+ ++ + P I +N++ RGYS+S P K+ISLF+K L + PD T+P L
Sbjct: 75 ASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLL 134
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA + +H K G + ++ +LI+MY C D+
Sbjct: 135 KACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDV---------------- 178
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
DG A++VF+ + E VVS++A+I GY + EAL +F +++
Sbjct: 179 ------DG---------AQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARK 223
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K N+VT++SVL +CA LGALD G+ + Y+ GL + + T+LIDMYAKCG++ A+
Sbjct: 224 LKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAI 283
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + D W+AMI AMHG ++ + +F EM + PDEITFLGLL AC+H
Sbjct: 284 SVFESMSVR--DTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSH 341
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E + +F S+ + G++P +HY CMVD L RAG + EAY+FI ++P++PT +
Sbjct: 342 TGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWR 401
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL+ C +HG L+LA+ V +++EL H G YV LSN+ A +W++ T R+ M +G
Sbjct: 402 TLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKG 461
Query: 430 VKKYPGWSFVE 440
K PG S +E
Sbjct: 462 AVKIPGCSSIE 472
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/430 (36%), Positives = 237/430 (55%), Gaps = 34/430 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN++ + K+ + + WN +I GYS + +++++ F +M G+ P+ +T +
Sbjct: 270 GNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVL 329
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L E +H ++G+ES+ + N+L++MY
Sbjct: 330 PACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMY---------------------- 367
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
AKCG +N A ++FE MP++NVV+W+A+I GY + G EAL +F EM+ G
Sbjct: 368 ---------AKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQG 418
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K + +VSVL ACAH AL+QG+ + Y I G + + T L+D+YAKCG + A
Sbjct: 419 IKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQ 478
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F + + DV+ W MI +HG +++L LF++MQ G D I F +L+AC+H
Sbjct: 479 KLFERMP--EQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSH 536
Query: 311 GGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV + +F+ + G+ PK EHYAC+VD L RAG + EA I M LEP A++ G
Sbjct: 537 AGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWG 596
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C H ++L E K L EL PD+ G YV LSN+YA +RW++ R+ M+ +G
Sbjct: 597 ALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKG 656
Query: 430 VKKYPGWSFV 439
VKK PG S V
Sbjct: 657 VKKQPGCSVV 666
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 181/375 (48%), Gaps = 34/375 (9%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+++ + +V + + WN +I GYS++ P ++++LF +M G+ P+ T +
Sbjct: 169 GSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVM 228
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
L E +H ++G ESD+ + N L++MY
Sbjct: 229 PVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMY---------------------- 266
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
AKCG +N A ++FE MP R+V SW+A+I GY + EAL F M+ G
Sbjct: 267 ---------AKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRG 317
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K N +T+VSVL ACAHL AL+QG+ + Y I G + +L++MYAKCG + A
Sbjct: 318 IKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAY 377
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F + K +V+ WNA+I G + HG E+L LF EMQ GI PD + +L ACAH
Sbjct: 378 KLFERMPK--KNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAH 435
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
+ + + G +VD ++ G V A + +MP + S
Sbjct: 436 FLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTM 495
Query: 371 LLT-GCMNHGKLDLA 384
+L G HG+ LA
Sbjct: 496 ILAYGIHGHGEDALA 510
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 119/369 (32%), Positives = 183/369 (49%), Gaps = 36/369 (9%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W I GY K+ NK++ L+ +M R G++PD L + + KA G + + VH I
Sbjct: 88 WKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDII 147
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
G+ESD+ + +L MY KCG + ARQ
Sbjct: 148 ARGFESDVIVGTALASMY-------------------------------TKCGSLENARQ 176
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
VF+ MP+R+VVSW+A+I GY + G EAL +F EM+ G K N TLVSV+ CAHL A
Sbjct: 177 VFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLA 236
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L+QG+ + Y I G+ + + L++MYAKCG + A +F + DV WNA+I
Sbjct: 237 LEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIR--DVASWNAII 294
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
GG +++ E+L F MQ+ GI P+ IT + +L ACAH + + + G
Sbjct: 295 GGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFE 354
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD--LAEIVG 388
+V+ ++ G V AY+ +MP + + ++++G HG LA +
Sbjct: 355 SNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVA-WNAIISGYSQHGHPHEALALFIE 413
Query: 389 KKLVELQPD 397
+ ++PD
Sbjct: 414 MQAQGIKPD 422
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 108/210 (51%), Gaps = 2/210 (0%)
Query: 157 ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRM 216
N V W I GYVK G + +AL ++ +M+ G +++ +SV+ AC L GR
Sbjct: 82 RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRK 141
Query: 217 MLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ +I +G + + T+L MY KCG+++ A VF + K DV+ WNA+I G + +
Sbjct: 142 VHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKR--DVVSWNAIIAGYSQN 199
Query: 277 GFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHY 336
G E+L LF+EMQ+ GI P+ T + ++ CAH + + + G+
Sbjct: 200 GQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVV 259
Query: 337 ACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
+V+ ++ G V A++ +MP+ AS
Sbjct: 260 NGLVNMYAKCGNVNTAHKLFERMPIRDVAS 289
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 43/213 (20%)
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC----------- 308
+++ ++W I G +GF ++L L+ +MQ GI PD++ FL ++ AC
Sbjct: 82 RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRK 141
Query: 309 ------AHG------------------GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS 344
A G G + A F + KR +V + ++ S
Sbjct: 142 VHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVS----WNAIIAGYS 197
Query: 345 RAGQVTEAYEFICQMP---LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR 401
+ GQ EA +M ++P +S L S++ C + L+ + + + + D
Sbjct: 198 QNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVL 257
Query: 402 YV-GLSNVYAIFKRWDEARTTREAMETRGVKKY 433
V GL N+YA + A E M R V +
Sbjct: 258 VVNGLVNMYAKCGNVNTAHKLFERMPIRDVASW 290
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 243/434 (55%), Gaps = 38/434 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + + + + WN +I GY ++ N +++ LF +M++ V PD T +
Sbjct: 143 GYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVI 202
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
AS R EL VH+ IA G+ S+L I N+LI
Sbjct: 203 SASARSGSIELGRQVHSWIADHGFGSNLKIVNALI------------------------- 237
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
D Y+KCGEM A +F + ++V+SW+ LI GY YKEAL++F+EM G
Sbjct: 238 ------DFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSG 291
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKCGAIK 247
N+VT++S+L ACAHLGA+D GR + Y IDK G++ L+TSLIDMY+KCG I+
Sbjct: 292 ESPNDVTMLSILHACAHLGAIDIGRWIHVY-IDKRLKGVTNASSLRTSLIDMYSKCGDIE 350
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VF+ + H+S + WNAMI G AMHG + ++F+ M+ I PD+ITF+GLLSA
Sbjct: 351 AAHQVFNSM-LHKS-LPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSA 408
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H G++ + F+S+ + PK EHY CM+D L +G EA E I M +EP
Sbjct: 409 CSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGV 468
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ SLL C HG ++L E + L +++P++ G YV LSN+YA RW+E R +
Sbjct: 469 IWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLN 528
Query: 427 TRGVKKYPGWSFVE 440
+G+KK PG S +E
Sbjct: 529 DKGMKKVPGCSSIE 542
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 136/409 (33%), Positives = 227/409 (55%), Gaps = 9/409 (2%)
Query: 2 LSFSALS-YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
L F LS + + Y+ V + P + WNT+ RG++ S +P ++ L+V M+ G+
Sbjct: 1 LEFCILSPHFEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLL 60
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ T+PFL K+ +L + + +H + K GYE DL++ SLI MY + A +V
Sbjct: 61 PNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKV 120
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD + VS+ +++ GYA G + AR +F+ +P ++VVSW+A+I GYV+ G+YKEAL
Sbjct: 121 FDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEAL 180
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F+EM + +E T+V+V+ A A G+++ GR + ++ D G L + +LID Y
Sbjct: 181 ELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFY 240
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
+KCG ++ A +F G+ DV+ WN +IGG KE+L LF EM G +P+++T
Sbjct: 241 SKCGEMETACGLFLGLS--YKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVT 298
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
L +L ACAH G + + + KR G+ S ++D S+ G + A++
Sbjct: 299 MLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNS 358
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV--ELQPDHDGRYVGL 405
M L + +++ G HG+ + A + ++ E++PD D +VGL
Sbjct: 359 M-LHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPD-DITFVGL 405
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 9/192 (4%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+I+ + +V + + + + WN +I G++ N + +F +M + + PD +T+
Sbjct: 344 SKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFV 403
Query: 68 FLAKASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
L A +L + + L +I + G G A E+ M
Sbjct: 404 GLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTM 463
Query: 127 KMS-VSWNSMLD-----GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
+ V W S+L G + GE A+ +F++ P N S+ L + Y G + E
Sbjct: 464 EPDGVIWCSLLKACKMHGNVELGE-KFAQNLFKIEP-NNPGSYVLLSNIYATAGRWNEVA 521
Query: 181 VIFEEMRDVGSK 192
I + D G K
Sbjct: 522 RIRGLLNDKGMK 533
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/441 (35%), Positives = 242/441 (54%), Gaps = 34/441 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ SA++ G++ Y+ ++ S +P +F WNT+IRGYS S +P +I+L+ M G+S
Sbjct: 45 LIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGIS 104
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ T+ F+ KA +L + +H+QI K G + + + N LI +Y
Sbjct: 105 PNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLY------------ 152
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
A CG M+ A +F+ MPE + SWS ++ GY + G EAL
Sbjct: 153 -------------------AACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEAL 193
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F EM+ ++ TL SV+ C LGALD G+ + YM +G+ + + L T+L+ MY
Sbjct: 194 KLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMY 253
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
+KCG++ AL VF G+ + DV W+ MI G A+HG +++L+LF M+ P+ +T
Sbjct: 254 SKCGSLDNALKVFQGMA--ERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVT 311
Query: 301 FLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F +LSAC+H GLV + F+++ + + P+ +HY CMVD RAG V A++FI M
Sbjct: 312 FTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTM 371
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P+EP + +LL C HG DL E + +K+++L P YV +SNVYA RW
Sbjct: 372 PIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVC 431
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R M+ + KK GWS +E
Sbjct: 432 QVRSLMKDKAPKKQHGWSSIE 452
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 154/411 (37%), Positives = 239/411 (58%), Gaps = 12/411 (2%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I GY+++ +++ LF ++ P + + A SG + L A +I
Sbjct: 249 WNIMITGYAQNGLLSEARRLFEEL------PIRDVFAWTAMVSGFVQNGMLDEAT--RIF 300
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ E + N++I Y I ARE+FD MP++ + SWN+M+ GYA+CG ++ A+
Sbjct: 301 EEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKI 360
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F+ MP+R+ +SW+A+I GY + G +EAL +F +M+ G N L L +CA + A
Sbjct: 361 LFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAA 420
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L+ G+ + ++ G +L+ MY KCG+I+EA VF + + D++ WN MI
Sbjct: 421 LELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDIT--EKDIVSWNTMI 478
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GM 329
G A HGF KE+L LF M++ I PD++T +G+LSAC+H GLV + +F S+ + G+
Sbjct: 479 AGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGI 537
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
++HY CM+D L RAG++ EA + MP P A+ G+LL HG +L E +
Sbjct: 538 TANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAE 597
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
K+ E++PD+ G YV LSN+YA RW E R R M +GVKK PG+S+VE
Sbjct: 598 KVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVE 648
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 113/436 (25%), Positives = 192/436 (44%), Gaps = 76/436 (17%)
Query: 9 YLGNIDYSC--KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM----------LR 56
YL N + C KV + + + WN ++ GY K+ N + + +LF +M +
Sbjct: 101 YLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAML 160
Query: 57 AGVSPDHLTYPFLAKASGRLAKRELA----VAVHAQIAKTGYESDLFIS---------NS 103
+G + + L K E++ ++ + Q + LF S N
Sbjct: 161 SGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNC 220
Query: 104 LIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSW 163
L+ Y + AR +FD MP + +SWN M+ GYA+ G ++ AR++FE +P R+V +W
Sbjct: 221 LMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAW 280
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
+A++ G+V+ G EA IFEEM + NEV+ +++ +++ R + M
Sbjct: 281 TAMVSGFVQNGMLDEATRIFEEM----PEKNEVSWNAMIAGYVQSQQIEKARELFDQMPS 336
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
+ S +++ YA+CG I +A I+F E Q D + W AMI G A G +E+L
Sbjct: 337 RNTS----SWNTMVTGYAQCGNIDQAKILFD--EMPQRDCISWAAMISGYAQSGQSEEAL 390
Query: 284 ELFTEMQIVGITPDEITFLGLLSACA-----------HGGLVM----------------- 315
LF +M+ G + LS+CA HG LV
Sbjct: 391 HLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMY 450
Query: 316 -------EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFI--CQMPLEPTAS 366
EA+ F+ + ++ +V + M+ +R G EA +M ++P
Sbjct: 451 GKCGSIEEAFDVFEDITEKDIVS----WNTMIAGYARHGFGKEALALFESMKMTIKPDDV 506
Query: 367 MLGSLLTGCMNHGKLD 382
L +L+ C + G +D
Sbjct: 507 TLVGVLSACSHTGLVD 522
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 146/298 (48%), Gaps = 23/298 (7%)
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV 161
N++I Y S AR+VF+ MP + +SWN ML GY K G ++ AR +F MPE++VV
Sbjct: 95 NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVV 154
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
SW+A++ G+ + G +EA IF++M NE++ +L A G ++ R +
Sbjct: 155 SWNAMLSGFAQNGFVEEARKIFDQML----VKNEISWNGLLSAYVQNGRIEDARRLF--- 207
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
D + + L+ Y + + +A +F + D + WN MI G A +G + E
Sbjct: 208 -DSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR--DKISWNIMITGYAQNGLLSE 264
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
+ LF E+ I D + ++S G++ EA F+ + ++ V + M+
Sbjct: 265 ARRLFEELPI----RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS----WNAMIA 316
Query: 342 ALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399
++ Q+ +A E QMP T+S +++TG G +D A+I L + P D
Sbjct: 317 GYVQSQQIEKARELFDQMPSRNTSS-WNTMVTGYAQCGNIDQAKI----LFDEMPQRD 369
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 34/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GNID + + + W +I GY++S +++ LF+KM R G +
Sbjct: 353 GNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACAL 412
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ +A EL +H ++ K G+++ N+L+ MYG CG I A +VF+ + K V
Sbjct: 413 SSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIV 472
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+M+ GYA+ G KEAL +FE M+ +
Sbjct: 473 SWNTMIAGYARHGFG-------------------------------KEALALFESMK-MT 500
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
K ++VTLV VL AC+H G +D+G M G++ T +ID+ + G + EA
Sbjct: 501 IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEA 560
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
L + + + D W A++G +HG
Sbjct: 561 LNLMKSMPFY-PDAATWGALLGASRIHG 587
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 171/434 (39%), Positives = 248/434 (57%), Gaps = 38/434 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + K+ + + WN +I GY+++ N +++ LF M++ V PD T +
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + EL VH I G+ S+L I N+LI
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALI------------------------- 308
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
D Y+KCGE+ A +FE +P ++V+SW+ LI GY YKEAL++F+EM G
Sbjct: 309 ------DLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 362
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKCGAIK 247
N+VT++S+L ACAHLGA+D GR + Y IDK G++ L+TSLIDMYAKCG I+
Sbjct: 363 ETPNDVTMLSILPACAHLGAIDIGRWIHVY-IDKRLKGVTNASSLRTSLIDMYAKCGDIE 421
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VF+ + H+S + WNAMI G AMHG S +LF+ M+ +GI PD+ITF+GLLSA
Sbjct: 422 AAHQVFNSI-LHKS-LSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSA 479
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H G++ + F+++ + M PK EHY CM+D L +G EA E I M +EP
Sbjct: 480 CSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGV 539
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ SLL C HG ++L E + L++++P++ G YV LSN+YA RW+E TR +
Sbjct: 540 IWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLN 599
Query: 427 TRGVKKYPGWSFVE 440
+G+KK PG S +E
Sbjct: 600 DKGMKKVPGCSSIE 613
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 229/410 (55%), Gaps = 9/410 (2%)
Query: 1 MLSFSALS-YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
++ F LS + + Y+ V + P + WNT+ RG++ S +P ++ L+V M+ G+
Sbjct: 71 LIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGL 130
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T+PF+ K+ + + +H + K G + DL++ SLI MY G + A +
Sbjct: 131 LPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHK 190
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD P + VS+ +++ GYA G + A+++F+ +P ++VVSW+A+I GY + G+YKEA
Sbjct: 191 VFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEA 250
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F++M + +E T+V+V+ ACA G+++ GR + ++ D G L + +LID+
Sbjct: 251 LELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDL 310
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y+KCG ++ A +F + DV+ WN +IGG KE+L LF EM G TP+++
Sbjct: 311 YSKCGELETACGLFERLP--YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 368
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
T L +L ACAH G + + + KR G+ S ++D ++ G + A++
Sbjct: 369 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 428
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL--VELQPDHDGRYVGL 405
+ L + S +++ G HG+ D + + ++ + +QPD D +VGL
Sbjct: 429 SI-LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPD-DITFVGL 476
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 160/429 (37%), Positives = 249/429 (58%), Gaps = 17/429 (3%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPFLAKAS 73
Y+ ++ + +P I WN++ RGY++S++ + +F +M R V+ + ++ A
Sbjct: 3 YARQLFDQIPDPNIALWNSMFRGYAQSESYRE---IFCEMFERNVVAWTSMINGYILSAD 59
Query: 74 GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
A+R +A E D+ + N ++ Y GD+V AR++F MP + + WN
Sbjct: 60 LVSARRLFDLAP---------ERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWN 110
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDVGSK 192
++L GYA G + +FE MPERN+ SW+ALI GY G + E L F+ M +
Sbjct: 111 TVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVP 170
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
N+ TLV+VL ACA LGALD G+ + Y GL + + +L+DMYAKCG I+ A+ V
Sbjct: 171 PNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISV 230
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F G++ D++ WN +IGGLAMH ++L LF +M+ G PD ITF+G+L AC H G
Sbjct: 231 FRGMDT--KDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMG 288
Query: 313 LVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
LV + + +F+S+ ++ P+ EHY CMVD L+RAG++ +A F+ +MP+E + L
Sbjct: 289 LVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGL 348
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
L C + ++LAE+ ++L+EL+P + YV LSN+Y RW++ + AM G K
Sbjct: 349 LGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFK 408
Query: 432 KYPGWSFVE 440
K PG S +E
Sbjct: 409 KLPGCSLIE 417
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 135/303 (44%), Gaps = 65/303 (21%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKN-----------PNKSI----------- 48
G++ + K+ + N + +WNTV++GY+ + N P ++I
Sbjct: 89 GDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYA 148
Query: 49 --SLFVKML--------RAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDL 98
LF ++L + V P+ T + A RL +L VH +G + ++
Sbjct: 149 HNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNV 208
Query: 99 FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
++ N+L+ MY CG I A VF GM TK +SWN+++ G A M R
Sbjct: 209 YVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLA--------------MHSR 254
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
+AL +F +M++ G K + +T + +LCAC H+G ++ G
Sbjct: 255 GA-----------------DALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYF 297
Query: 219 RYMIDKGLSL-TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
+ M D L + + ++DM A+ G +++A+ + ++D +IW ++G ++
Sbjct: 298 QSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPV-EADGVIWAGLLGACRIYK 356
Query: 278 FVK 280
V+
Sbjct: 357 NVE 359
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 109/221 (49%), Gaps = 17/221 (7%)
Query: 114 IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKC 173
+ YAR++FD +P WNSM GYA+ R++F M ERNVV+W+++I+GY+
Sbjct: 1 MTYARQLFDQIPDPNIALWNSMFRGYAQSESY---REIFCEMFERNVVAWTSMINGYILS 57
Query: 174 GDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
D A +F D+ + + V ++ G + + R + M ++ +
Sbjct: 58 ADLVSARRLF----DLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVM----FW 109
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM-QIV 292
+++ YA G ++ +F E + ++ WNA+IGG A +G E L F M
Sbjct: 110 NTVLKGYATNGNVEALEGLFE--EMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSES 167
Query: 293 GITPDEITFLGLLSACAH-GGLVMEAW--YFFKSLGKRGMV 330
+ P++ T + +LSACA G L + W + +S G +G V
Sbjct: 168 DVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNV 208
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 19/205 (9%)
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
M ARQ+F+ +P+ N+ W+++ GY + Y+E IF EM + N V S++
Sbjct: 1 MTYARQLFDQIPDPNIALWNSMFRGYAQSESYRE---IFCEM----FERNVVAWTSMING 53
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
L + R + D + L ++ Y + G + EA +FH E DV+
Sbjct: 54 Y----ILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFH--EMPNRDVM 107
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
WN ++ G A +G V+ LF EM I ++ L+ AH GL E FK +
Sbjct: 108 FWNTVLKGYATNGNVEALEGLFEEMPERNI----FSWNALIGGYAHNGLFFEVLGSFKRM 163
Query: 325 GKRGMVPKSEHYACMVDALSRAGQV 349
VP ++ A +V LS ++
Sbjct: 164 LSESDVPPND--ATLVTVLSACARL 186
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 85/215 (39%), Gaps = 18/215 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + V + + WNT+I G + +++LF +M AG PD +T+ +
Sbjct: 222 GIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGIL 281
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIH------MYGSCGDIVYAREVFDGM 124
A + E A +A D I + H M G + A M
Sbjct: 282 CACTHMGLVEDGFAYFQSMA-----DDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKM 336
Query: 125 PTKMS-VSWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
P + V W +L + +A +++ EL P +N ++ L + Y G +++
Sbjct: 337 PVEADGVIWAGLLGACRIYKNVELAELALQRLIELEP-KNPANYVMLSNIYGDAGRWEDV 395
Query: 180 LVIFEEMRDVG-SKANEVTLVSVLCACAHLGALDQ 213
+ MRD G K +L+ V A +LD+
Sbjct: 396 ARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDE 430
>gi|224116552|ref|XP_002331925.1| predicted protein [Populus trichocarpa]
gi|222874597|gb|EEF11728.1| predicted protein [Populus trichocarpa]
Length = 530
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 163/433 (37%), Positives = 245/433 (56%), Gaps = 4/433 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LGN + KV ++ +P + ++I Y ++ P K+ S+F K++ G+ PD +
Sbjct: 49 LGNPRDAQKVFGYIQDPDRVTYTSLINLYLSTQLPIKAFSVFSKLVNEGLRPDSHSVVGA 108
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A G+ VH I + ++ + N+LI MY G+I A+ VF M K
Sbjct: 109 LSACGKKQDLLNGKLVHGMIFRFQLGANSIVGNALIDMYCRNGEIKIAQLVFKQMGIKDV 168
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
SW S+L+G+ C + AR+VF+ MP RN V+W+A+I GYV+ G L +F +M+
Sbjct: 169 SSWTSLLNGFVMCNGLESARRVFDEMPWRNDVAWTAMITGYVRGGMPIRGLEMFRQMKAE 228
Query: 190 G-SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G ++ +T V+VL CA LGA D G+ + Y+ L + + +L+DMY+K G ++
Sbjct: 229 GENQPTVITAVAVLSGCADLGAHDHGQAVHGYISKVNLDKGVTVSNALMDMYSKGGCVES 288
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A+ +F + K DV W MI + HG +LE+F +M G+ P+++TFL +LS C
Sbjct: 289 AMKIFDRLVK--KDVFSWTTMISAHSSHGKGNHALEVFYDMLESGVIPNDVTFLLVLSGC 346
Query: 309 AHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
+H GL++EA F + + G PK EHY CMVD L RAG + EA E I MP++P A +
Sbjct: 347 SHSGLLVEANKLFNGMIQCYGFEPKIEHYGCMVDLLCRAGLLEEAKELIDNMPMDPDAVI 406
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
SLL+ CMN L LAEI GKK++EL+P DG YV LSN+Y + R +AR R+ M
Sbjct: 407 WRSLLSACMNQRNLGLAEIAGKKIIELEPHDDGVYVLLSNIYHVANRMKDARKMRKMMGD 466
Query: 428 RGVKKYPGWSFVE 440
+ V K P S++E
Sbjct: 467 QKVMKKPACSYIE 479
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 108/232 (46%), Gaps = 11/232 (4%)
Query: 102 NSLIHMYGSCGDIV-----YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP 156
SL + SC D+V +A+ + G+ +++ YAK G A++VF +
Sbjct: 4 QSLKLLLQSCADLVTLKQIHAQALTQGLLFIEQPLACKLVNRYAKLGNPRDAQKVFGYIQ 63
Query: 157 ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRM 216
+ + V++++LI+ Y+ +A +F ++ + G + + ++V L AC L G++
Sbjct: 64 DPDRVTYTSLINLYLSTQLPIKAFSVFSKLVNEGLRPDSHSVVGALSACGKKQDLLNGKL 123
Query: 217 MLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ + L + +LIDMY + G IK A +VF + DV W +++ G M
Sbjct: 124 VHGMIFRFQLGANSIVGNALIDMYCRNGEIKIAQLVFK--QMGIKDVSSWTSLLNGFVMC 181
Query: 277 GFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328
++ + +F EM +++ + +++ GG+ + F+ + G
Sbjct: 182 NGLESARRVFDEMP----WRNDVAWTAMITGYVRGGMPIRGLEMFRQMKAEG 229
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 156/422 (36%), Positives = 243/422 (57%), Gaps = 8/422 (1%)
Query: 22 HLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKREL 81
NP F W VIRGY+ +++I+++ M + ++P T+ L KA G + L
Sbjct: 111 QFRNP--FLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNL 168
Query: 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
HAQ + +++ N++I MY CG IV AR+VFD MP + +SW ++ YA+
Sbjct: 169 GRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYAR 228
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
G M A +FE +P +++V+W+A++ G+ + +EAL F+ M G +A+EVT+
Sbjct: 229 VGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGY 288
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLT--LPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
+ ACA LGA ++ G S + + + ++LIDMY+KCG ++EA+ VF V +
Sbjct: 289 ISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVF--VSMN 346
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQI-VGITPDEITFLGLLSACAHGGLVMEAW 318
+V +++MI GLA HG +E+L+LF M I P+ +TF+G L+AC+H GLV +
Sbjct: 347 NKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGR 406
Query: 319 YFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
F S+ + G+ P +HY CMVD L RAG++ EA E I M +EP + G+LL C
Sbjct: 407 QVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRI 466
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
H D+AEI + L EL+PD G Y+ LSNVY+ W + R+ ++ +G+KK P S
Sbjct: 467 HNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVS 526
Query: 438 FV 439
+V
Sbjct: 527 WV 528
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 125/278 (44%), Gaps = 38/278 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A + +GN++ + + L + W ++ G++++ P +++ F +M ++G+ D +
Sbjct: 224 AAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEV 283
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYE-SD-LFISNSLIHMYGSCGDIVYAREVFD 122
T A +L + A K+GY SD + I ++LI MY CG++ A VF
Sbjct: 284 TVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFV 343
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
M K S++SM+ G A G A +F M V+ +A+
Sbjct: 344 SMNNKNVFSYSSMILGLATHGRAQEALDLFHYM-----VTQTAI---------------- 382
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYA 241
K N VT V L AC+H G +DQGR + M G+ T T ++D+
Sbjct: 383 ---------KPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLG 433
Query: 242 KCGAIKEA--LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
+ G ++EA LI VE H +W A++G +H
Sbjct: 434 RAGRLQEALELIKTMSVEPHGG---VWGALLGACRIHN 468
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 162/503 (32%), Positives = 250/503 (49%), Gaps = 72/503 (14%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S +G + + K+ +P +F WN ++R YS+ +I ++ +M A VSPD ++P
Sbjct: 118 SNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFP 177
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ KA L E+ VH QI + G+ESD+F+ N L+ +Y CG+IV A VF + +
Sbjct: 178 CVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDR 237
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNV-VSWSALIDG----------------- 169
VSW S++ GYA+ G+ A ++F M + NV W AL+
Sbjct: 238 TIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIH 297
Query: 170 ---------------------YVKCGDYKEALVIFEE----------------------- 185
Y KCG A + F +
Sbjct: 298 GCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAE 357
Query: 186 --------MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
M+ + + +T+ S + ACA +G+L+ R M Y+ + + TSLI
Sbjct: 358 EAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLI 417
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
D YAKCG++ A VF + DV++W+AM+ G +HG +ES+ LF M+ G++P+
Sbjct: 418 DTYAKCGSVDMARFVFDRIP--DKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPN 475
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
++TF+GLL+AC + GLV E W F + G+ P+ +HYAC+VD L RAG + AY F+
Sbjct: 476 DVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVM 535
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
MP+EP S+ G+LL+ C H + L E ++L L P + G YV LSN+YA WD
Sbjct: 536 NMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDC 595
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
R M +G+ K+ G+S +E
Sbjct: 596 VAKVRVLMREKGLTKHLGYSVIE 618
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 153/370 (41%), Gaps = 81/370 (21%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG- 143
++A++ TG + F+ L++ + G++ AR++FD P WN+++ Y++ G
Sbjct: 94 IYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGF 153
Query: 144 ----------------------------------EMNMAR----QVFELMPERNVVSWSA 165
+ M R Q+F E +V +
Sbjct: 154 FGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNG 213
Query: 166 LIDGYVKCGDYK-------------------------------EALVIFEEMRDVGSKAN 194
L+ Y KCG+ EAL IF EMR + +
Sbjct: 214 LVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPD 273
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
+ LVSVL A + L+ G+ + +I GL L SL +YAKCG + A + F+
Sbjct: 274 WIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFN 333
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH-GGL 313
VE ++ WNAMI G +G+ +E++ELF M+ I PD IT ++ACA G L
Sbjct: 334 QVE--NPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSL 391
Query: 314 VMEAW---YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
+ W Y S + ++ + ++D ++ G V A ++P + + +
Sbjct: 392 ELARWMDEYISMSEFRNDVIVNTS----LIDTYAKCGSVDMARFVFDRIP-DKDVVVWSA 446
Query: 371 LLTGCMNHGK 380
++ G HG+
Sbjct: 447 MMVGYGLHGQ 456
>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Glycine max]
Length = 912
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 156/430 (36%), Positives = 239/430 (55%), Gaps = 1/430 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + ++ + + + W T+I GY ++++ ++ MLR+G++ + + L
Sbjct: 481 GLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLV 540
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A GRL +H + K G++ FI ++IH Y +CG + A F+
Sbjct: 541 SACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLE 600
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+++ G+ K ++ AR++F+ MPER+V SWS +I GY + + AL +F +M G
Sbjct: 601 SWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASG 660
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K NEVT+VSV A A LG L +GR Y+ ++ + L L+ +LIDMYAKCG+I AL
Sbjct: 661 IKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESIPLNDNLRAALIDMYAKCGSINSAL 720
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
F+ + V WNA+I GLA HG L++F++MQ I P+ ITF+G+LSAC H
Sbjct: 721 QFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCH 780
Query: 311 GGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV F+ + V P +HY CMVD L RAG + EA E I MP++ + G
Sbjct: 781 AGLVEPGRRIFRIMKSAYNVEPDIKHYGCMVDLLGRAGLLEEAEEMIRSMPMKADIVIWG 840
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C HG +++ E + L L P H G V LSN+YA RW++ R A++ +
Sbjct: 841 TLLAACRTHGDVNIGERAAESLAGLAPSHGGGKVLLSNIYADAGRWEDVSLVRRAIQNQR 900
Query: 430 VKKYPGWSFV 439
+++ PG S V
Sbjct: 901 MERMPGCSGV 910
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 111/399 (27%), Positives = 191/399 (47%), Gaps = 30/399 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + K+ + + + T+I G +++ +++ +F M GV P+ LT +
Sbjct: 349 GQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVI 408
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + +HA K E + +S +L+ Y C + AR +FD MP V
Sbjct: 409 YACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVNLV 468
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN ML+GYAK G ++MAR++FE +P+++V+SW +IDGY+ EALV++ M G
Sbjct: 469 SWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSG 528
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
NE+ +V+++ AC L A+ G + ++ KG +QT++I YA CG + A
Sbjct: 529 LALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLAC 588
Query: 251 IVFH-GVEKH----------------------------QSDVLIWNAMIGGLAMHGFVKE 281
+ F G + H + DV W+ MI G A +
Sbjct: 589 LQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRI 648
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
+LELF +M GI P+E+T + + SA A G + E + + + + A ++D
Sbjct: 649 ALELFHKMVASGIKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESIPLNDNLRAALID 708
Query: 342 ALSRAGQVTEAYEFICQMPLEP-TASMLGSLLTGCMNHG 379
++ G + A +F Q+ + + S +++ G +HG
Sbjct: 709 MYAKCGSINSALQFFNQIRDKTFSVSPWNAIICGLASHG 747
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 140/275 (50%), Gaps = 33/275 (12%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+H+ + K G S+ FI NSLI+MY G I A+ +FD PT +S N M+ GYAK G+
Sbjct: 291 LHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAKAGQ 350
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
++ AR++F++MP++ VS++ +I G V+ ++EAL +F++MR G N++TLV+V+ A
Sbjct: 351 LDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVIYA 410
Query: 205 CAHLGALDQGRMM-------------------------------LRYMIDKGLSLTLPLQ 233
C+H G + RM+ R + D+ + L
Sbjct: 411 CSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVNLVSW 470
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
+++ YAK G + A +F V DV+ W MI G + + E+L ++ M G
Sbjct: 471 NVMLNGYAKAGLVDMARELFERVP--DKDVISWGTMIDGYILMNRLHEALVMYRAMLRSG 528
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328
+ +EI + L+SAC + + W + K+G
Sbjct: 529 LALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKG 563
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 117/269 (43%), Gaps = 44/269 (16%)
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
E+ LVS L C+ + QGR + ++ GL +Q SLI+MYAK G+IK+A ++F
Sbjct: 272 ELALVSALKYCS---SSSQGRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFD 328
Query: 255 G---VEKHQSDVLI--------------------------WNAMIGGLAMHGFVKESLEL 285
+ ++++ + MI GL + +E+LE+
Sbjct: 329 ACPTLNPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEV 388
Query: 286 FTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK---SLGKRGMVPKSEHYACMVDA 342
F +M+ G+ P+++T + ++ AC+H G ++ L G+V S + ++ A
Sbjct: 389 FKDMRSDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTN---LMRA 445
Query: 343 LSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRY 402
V EA +MP E +L G G +D+A ++L E PD D
Sbjct: 446 YCLCSGVGEARRLFDRMP-EVNLVSWNVMLNGYAKAGLVDMA----RELFERVPDKDVIS 500
Query: 403 VG-LSNVYAIFKRWDEARTTREAMETRGV 430
G + + Y + R EA AM G+
Sbjct: 501 WGTMIDGYILMNRLHEALVMYRAMLRSGL 529
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 161/438 (36%), Positives = 242/438 (55%), Gaps = 3/438 (0%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
F + + G + ++ + +P I + +++ + K + K+IS+F + +G PD
Sbjct: 60 FRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDG 119
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
ASG L + + VH I + G +S+L + N+L+ MY CG AR VFD
Sbjct: 120 FAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDR 179
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M K V+W SML GY KC ++ A F MP ++ VSW+ALI G+V+ +AL +F
Sbjct: 180 MLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELF 239
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
+M G + N +T+V VL ACA +GALD GR + Y + + + +L+DMYAK
Sbjct: 240 GKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKS 299
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G+I A VF V+ D W MI + G ++++ELF +M GI P+ +TF+
Sbjct: 300 GSIASAFSVFEEVQ--MKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVS 357
Query: 304 LLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+LSAC+H GL+ E F + + + P+ EHY CMVD L R G + EA I M +E
Sbjct: 358 VLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVE 417
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P + SLL+ C+ HG LAEI GK++++ +P DG YV L N+YA+ RW EA R
Sbjct: 418 PDIVIWRSLLSACLAHGNDRLAEIAGKEIIKREPGDDGVYVLLWNMYALSNRWKEALDMR 477
Query: 423 EAMETRGVKKYPGWSFVE 440
+ M +R + K PG S++E
Sbjct: 478 KQMLSRKIYKKPGCSWIE 495
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 108/242 (44%), Gaps = 36/242 (14%)
Query: 106 HMYGSCGDI-----VYAREVFDGM-PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
H+ C I ++A+ + G+ P + S+S + YA+ G A ++F+ +P +
Sbjct: 25 HLLTQCKTIRELQRIHAQALTHGLHPNQQSISCK-IFRSYAEFGRPADAGRLFDEIPHPD 83
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
++S+++L+ ++K + +A+ +F G + + V L A LG G ++
Sbjct: 84 IISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHG 143
Query: 220 YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH---------------------GVEK 258
+ GL L + +L+DMY +CG + A VF GV+
Sbjct: 144 LIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDS 203
Query: 259 HQS--------DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
S + W A+I G ++LELF +M + G P+ IT +G+LSACA
Sbjct: 204 ALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACAD 263
Query: 311 GG 312
G
Sbjct: 264 IG 265
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 155/423 (36%), Positives = 231/423 (54%), Gaps = 33/423 (7%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
V +S + WN +I Y + + + +++ F +L+ G+ PD T+ +
Sbjct: 463 NVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPD 522
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
EL V + I + G+ESDL I N+L+ M+
Sbjct: 523 ALELGKWVQSLIIRAGFESDLHIRNALVSMF----------------------------- 553
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
CG++ A +F MPER++VSW+ +I G+V+ G+ + A F+ M++ G K +++T
Sbjct: 554 --VNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQIT 611
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+L ACA AL +GR + + + L + + T LI MY KCG+I +A +VFH +
Sbjct: 612 FTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLP 671
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
K +V W +MI G A HG KE+LELF +MQ G+ PD ITF+G LSACAH GL+ E
Sbjct: 672 K--KNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEG 729
Query: 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
+ F+S+ + P+ EHY CMVD RAG + EA EFI +M ++P + + G+LL C
Sbjct: 730 LHHFESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQV 789
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
H ++LAE V +K +EL P+ DG YV LSN+YA W E R+ M RGV K PG S
Sbjct: 790 HLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQS 849
Query: 438 FVE 440
++E
Sbjct: 850 WIE 852
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/389 (25%), Positives = 194/389 (49%), Gaps = 36/389 (9%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN + + ++ + + ++ WN ++ GY + + ++ L +M++ GV PD T+ ++
Sbjct: 153 GNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYML 212
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + + + I G+++DLF+ +LI+M+ CG + A +VF+ +P + +
Sbjct: 213 NACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLI 272
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W SM+ G A+ RQ +K+A +F+ M + G
Sbjct: 273 TWTSMITGLAR------HRQ-------------------------FKQACNLFQVMEEEG 301
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ ++V VS+L AC H AL+QG+ + M + GL + + T+L+ MY KCG++++AL
Sbjct: 302 VQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDAL 361
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF+ V+ +V+ W AMI G A HG ++E+ F +M GI P+ +TF+ +L AC+
Sbjct: 362 EVFNLVKGR--NVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSR 419
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
+ + + K G + ++ ++ G + +A ++ + + +
Sbjct: 420 PSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAW-NA 478
Query: 371 LLTGCMNHGKLDLAEIVGKKLVE--LQPD 397
++T + H K D A + L++ ++PD
Sbjct: 479 MITAYVQHEKYDNAVATFQALLKEGIKPD 507
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 188/412 (45%), Gaps = 39/412 (9%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + KV ++L + W ++I G ++ + ++ +LF M GV PD + + L
Sbjct: 254 GGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLL 313
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA E VHA++ + G ++++++ +L+ MY
Sbjct: 314 KACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMY---------------------- 351
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
KCG M A +VF L+ RNVVSW+A+I G+ + G +EA + F +M + G
Sbjct: 352 ---------TKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESG 402
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ N VT +S+L AC+ AL QGR + +I G ++T+L+ MYAKCG++ +A
Sbjct: 403 IEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDAR 462
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + K +V+ WNAMI H ++ F + GI PD TF +L+ C
Sbjct: 463 NVFERISKQ--NVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKS 520
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHY-ACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
+E + +SL R H +V G + A MP S
Sbjct: 521 PD-ALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSW-N 578
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRYVGLSNVYAIFKRWDEAR 419
+++ G + HG+ A K + E ++PD + GL N A + E R
Sbjct: 579 TIIAGFVQHGENQFAFDYFKMMQESGVKPDQI-TFTGLLNACASPEALTEGR 629
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 5/247 (2%)
Query: 153 ELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD 212
E + +N +A ++ K G EA+++ + + + T S+L C L
Sbjct: 62 EFVDIKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLG 121
Query: 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
G + ++ + + + LI MYAKCG A +F E DV WN ++GG
Sbjct: 122 DGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFD--EMPDKDVYSWNLLLGG 179
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPK 332
H +E+ L +M G+ PD+ TF+ +L+ACA V + F + G
Sbjct: 180 YVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTD 239
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV 392
+++ + G V +A + +P + S++TG H + A + + +
Sbjct: 240 LFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWT-SMITGLARHRQFKQACNLFQVME 298
Query: 393 E--LQPD 397
E +QPD
Sbjct: 299 EEGVQPD 305
>gi|147833477|emb|CAN75184.1| hypothetical protein VITISV_001911 [Vitis vinifera]
Length = 596
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 174/496 (35%), Positives = 248/496 (50%), Gaps = 61/496 (12%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
F A LG++ + K +H++ + WNT++ +SK+K + LF +ML+ G D
Sbjct: 3 FGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDS 62
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
F KA L+ + A H+ K E D +++ +L+++Y G + A +VF+
Sbjct: 63 FNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEE 122
Query: 124 MPTKMSVSWNSMLDGYAKCGE--------MNMARQVFELMP------------------- 156
+P K SV W M+ GY E M R FEL P
Sbjct: 123 VPLKNSVIWGVMIKGYLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEG 182
Query: 157 -------------------------------ERNVVSWSALIDGYVKCGDYKEALVIFEE 185
RBVV WSA+I G+ + G E++ +F +
Sbjct: 183 KTFHGLYFSSGYVYEVRGFLDXALXLFEXIXYRBVVVWSAIIAGFARNGRALESISMFRQ 242
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M N VT S++ AC+ LG+L QGR + YMI G+ L + TS IDMYAKCG
Sbjct: 243 MLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGC 302
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
I A VF + + +V W+ MI G MHG E+L LF EM+ V P+ +TF+ +L
Sbjct: 303 IVTAYRVFCQIP--EKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVL 360
Query: 306 SACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
SAC+H G + E W FKS+ + G+ P EHYACMVD L RAG++ EA FI MP EP
Sbjct: 361 SACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPG 420
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
AS G+LL C H + +LAE V KKL+ L+ D G YV LSN+YA W+ + TR
Sbjct: 421 ASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLK 480
Query: 425 METRGVKKYPGWSFVE 440
M +G+ K G++ +E
Sbjct: 481 MCEKGLLKIVGFTSIE 496
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 162/430 (37%), Positives = 247/430 (57%), Gaps = 6/430 (1%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
IDY+ ++ + NP ++ + +I G+ S N +I L+ +ML + PD+ + KA
Sbjct: 97 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKA 156
Query: 73 SG-RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
G +LA RE VH++ K G S+ + ++ +YG CG++ AR VF+ MP + V+
Sbjct: 157 CGSQLALRE-GREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDV-VA 214
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
M+ Y+ G + A VF + ++ V W+A+IDG+V+ + AL F M+
Sbjct: 215 STVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENV 274
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ NE T+V VL AC+ LGAL+ GR + YM + L L + +LI+MY++CG+I EA
Sbjct: 275 RPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQT 334
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF E DV+ +N MI GL+M+G ++++ELF M + P +TF+G+L+AC+HG
Sbjct: 335 VFD--EMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHG 392
Query: 312 GLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GLV + F S+ + G+ P+ EHY CMVD L R G++ EAY+ I M + P MLG+
Sbjct: 393 GLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGT 452
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL+ C H L+L E V K L + G YV LS+VYA +W EA R M+ G+
Sbjct: 453 LLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 512
Query: 431 KKYPGWSFVE 440
+K PG S +E
Sbjct: 513 QKEPGCSSIE 522
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 120/274 (43%), Gaps = 33/274 (12%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S+ S G ++ + V S + W +I G+ +++ N+++ F M V P+
Sbjct: 219 ISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNE 278
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + A +L E+ VH+ + K E +LF+ N+LI+MY CG I A+ VFD
Sbjct: 279 FTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDE 338
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + +++N+M+ G + G+ A ++F +M R +
Sbjct: 339 MKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRL----------------------- 375
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAK 242
+ VT V VL AC+H G +D G + M D G+ + ++D+ +
Sbjct: 376 --------RPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGR 427
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
G ++EA + + K D ++ ++ MH
Sbjct: 428 VGRLEEAYDLIRTM-KMTPDHIMLGTLLSACKMH 460
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 158/432 (36%), Positives = 242/432 (56%), Gaps = 12/432 (2%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V + + WN +I Y ++ +++ F +M G PD +T + A LA
Sbjct: 212 RVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLA 271
Query: 78 KRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
+ V +HA++ K+ + +DL + N+L+ MY CG + AR VFD MP + +VS +M+
Sbjct: 272 AFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMV 331
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
GYAK + AR +F + ++++VSW+ALI GY + G+ +EAL +F ++
Sbjct: 332 SGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHY 391
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT------LPLQTSLIDMYAKCGAIKEAL 250
T ++L A A+L L+ GR +++ G + + SLIDMY KCG+++E L
Sbjct: 392 TFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGL 451
Query: 251 IVFHG-VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF VEK D + WN MI G A +G+ E+LELF +M G PD +T +G L AC+
Sbjct: 452 RVFENMVEK---DHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACS 508
Query: 310 HGGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E YFF + G++P +HY CMVD L RAG + EA + I MP +P A +
Sbjct: 509 HAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVW 568
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
SLL+ C H + L + V +K+ E+ P G YV L+N+Y+ RW +A + R+ M R
Sbjct: 569 SSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRR 628
Query: 429 GVKKYPGWSFVE 440
GV K PG S+++
Sbjct: 629 GVVKQPGCSWID 640
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 155/299 (51%), Gaps = 15/299 (5%)
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
+L A +VH ++ +T + ++FI N LI +YG CG + YAR+VFD M + S+NS
Sbjct: 36 KLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNS 95
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ + G ++ + +F LMPE++ SW+++I G+ + ++EAL F M N
Sbjct: 96 IISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLN 155
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
+ + S L AC+ L L G + + SL + + + LID Y+KCG + A VF
Sbjct: 156 DYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFD 215
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
G+E + +V+ WN +I +G E+LE F M +G PDE+T ++SACA
Sbjct: 216 GME--EKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACA----T 269
Query: 315 MEAWYFFKSLGKRGMVPKSEHYA-------CMVDALSRAGQVTEAYEFICQMPLEPTAS 366
+ A F + + V KS+ + +VD ++ G+V EA +MP+ S
Sbjct: 270 LAA--FKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVS 326
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 146/336 (43%), Gaps = 61/336 (18%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S L G +D S + S + WN++I G+++ +++ FV+M R +
Sbjct: 98 STLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDY 157
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
++ A RL +L +H I+K+ Y D+F+ + LI Y CG + AR VFDGM
Sbjct: 158 SFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGM 217
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
K VSWN LI Y + G EAL F
Sbjct: 218 EEKNVVSWN-------------------------------CLITCYEQNGPAIEALEAFG 246
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQG-RMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
M ++G K +EVTL SV+ ACA L A +G ++ R + L L +L+DMYAKC
Sbjct: 247 RMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKC 306
Query: 244 GAIKEALIVFH---------------GVEK--------------HQSDVLIWNAMIGGLA 274
G + EA VF G K Q D++ WNA+I G
Sbjct: 307 GRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYT 366
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+G +E+L LF ++ + P TF LL+A A+
Sbjct: 367 QNGENEEALGLFRMLKRESVCPTHYTFGNLLNASAN 402
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 102/294 (34%), Gaps = 73/294 (24%)
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH----- 259
C L + R + +I + +Q LID+Y KCG + A VF + +
Sbjct: 34 CVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSF 93
Query: 260 ------------------------QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
+ D WN+MI G A H +E+L+ F M
Sbjct: 94 NSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFV 153
Query: 296 PDEITFLGLLSACA-----------HG------------------------GLVMEAWYF 320
++ +F LSAC+ HG GLV A
Sbjct: 154 LNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRV 213
Query: 321 FKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTASMLGSLLTGCMN 377
F + ++ +V + C++ + G EA E +M +P L S+++ C
Sbjct: 214 FDGMEEKNVVS----WNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACAT 269
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVG--LSNVYAIFKRWDEARTTREAMETRG 429
+ ++V+ + +G L ++YA R +EAR + M R
Sbjct: 270 LAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRN 323
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 178/508 (35%), Positives = 263/508 (51%), Gaps = 78/508 (15%)
Query: 9 YLGNIDYSCKVLSHLS-NPRIFYWNTVIRGYSKS-KNPNKSISLFVKMLRAGVSPDHLTY 66
+L N YS + SH++ +P + +N +IR + + N ++SLF +M+ ++PD+ T+
Sbjct: 66 HLKNFPYSSLLFSHIAPHPNDYAFNIMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFTF 125
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
PF + LA A A H+ + K SD ++SLI Y CG + AR+VFD +P
Sbjct: 126 PFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPH 185
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERN--------VVS---------------W 163
+ SVSWNSM+ GYAK G A +VF M R+ +VS W
Sbjct: 186 RDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRW 245
Query: 164 -----------------SALIDGYVKCGDYK----------------------------- 177
SALI Y KCG+ +
Sbjct: 246 VEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGM 305
Query: 178 --EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
EA+++F M++ AN++TL +VL ACA +GALD G+ + Y +G + + T+
Sbjct: 306 ADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATA 365
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM--QIVG 293
LIDMYAK G++ A VF + Q + WNAMI LA HG KE+L LF M + G
Sbjct: 366 LIDMYAKSGSLDNAQRVFKDMP--QKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGG 423
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEA 352
P++ITF+GLLSAC H GLV E + F + G+VPK EHY+CMVD L+RAG + EA
Sbjct: 424 ARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEA 483
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412
++ I +MP +P LG+LL C + +D+ E V + ++E+ P + G Y+ S +YA
Sbjct: 484 WDLIRKMPEKPDKVTLGALLGACRSKKNVDIGERVMRMILEVDPSNSGNYIISSKIYANL 543
Query: 413 KRWDEARTTREAMETRGVKKYPGWSFVE 440
W+++ R M +G+ K PG S++E
Sbjct: 544 NMWEDSARMRLLMRQKGITKTPGCSWIE 571
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 161/433 (37%), Positives = 240/433 (55%), Gaps = 36/433 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + K+ +S + WN +I GY ++ N +++ L+ M++ V PD T +
Sbjct: 145 GYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVV 204
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + EL +H+ I G+ S++ I N LI
Sbjct: 205 SACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLI------------------------- 239
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
D Y+KCGE+ A +F+ + +++V+SW+ LI G+ YKEAL++F+EM G
Sbjct: 240 ------DLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSG 293
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMID--KGLSLTLPLQTSLIDMYAKCGAIKE 248
N+VT++SVL ACAHLGA+D GR + Y+ KG++ L TSLIDMYAKCG I+
Sbjct: 294 ESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEA 353
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A VF + + WNAMI G AMHG + +LF++M+ GI PD+ITF+GLLSAC
Sbjct: 354 AKQVFDSMLTRS--LSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSAC 411
Query: 309 AHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
+H G++ + F+S+ + + PK EHY CM+D L G EA E I MP+EP +
Sbjct: 412 SHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVI 471
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
SLL C H ++L E + L++++P++ G YV LSN+YA RWD+ R +
Sbjct: 472 WCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLND 531
Query: 428 RGVKKYPGWSFVE 440
+G+KK PG S +E
Sbjct: 532 KGIKKAPGCSSIE 544
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/410 (31%), Positives = 228/410 (55%), Gaps = 9/410 (2%)
Query: 1 MLSFSALS-YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
++ FS LS + + Y+ + + P + WNT+ RG++ + + ++ L+V M+ G+
Sbjct: 2 LIEFSVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGL 61
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ ++PFL K+ + +H + K GY+ D++++ SLI MY G + A +
Sbjct: 62 LPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHK 121
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD + VS+ +++ GYA G +N AR++F+ + ++VVSW+A+I GYV+ ++KEA
Sbjct: 122 VFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEA 181
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L ++++M K +E T+V+V+ ACA G+++ GR + ++ D G + + LID+
Sbjct: 182 LELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDL 241
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y+KCG ++ A +F G+ K DV+ WN +IGG KE+L LF EM G +P+++
Sbjct: 242 YSKCGEVETACGLFQGLAK--KDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDV 299
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
T L +L ACAH G + + + KR G+ S ++D ++ G + A +
Sbjct: 300 TMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFD 359
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRYVGL 405
M L + S +++ G HGK + A + K+ + + PD D +VGL
Sbjct: 360 SM-LTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPD-DITFVGL 407
>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
Length = 579
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 171/511 (33%), Positives = 258/511 (50%), Gaps = 102/511 (19%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
+ WN +I+ +S +P +++ LF ML GV D + + KA RL + + +H
Sbjct: 53 YLWNAMIKSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIHGF 112
Query: 89 IAKTGYESDLFISNSLIHM-------------------------------YGSCGDIVYA 117
+ KTG SDLF+ N LI + Y CG I A
Sbjct: 113 LKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESA 172
Query: 118 REVFDGMPTKMS----------------------------------VSWNSMLDGYAKCG 143
E+FD MP +M +SWNSM+DGY K G
Sbjct: 173 SELFDLMPREMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHG 232
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGS---------- 191
+ A+ +F+++P R+VV+W+ +IDGY K G +A +F++M RDV +
Sbjct: 233 RIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQ 292
Query: 192 --------------------KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
+E TLV VL A A LG L + M Y+++K L
Sbjct: 293 NRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGK 352
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
L +LIDMY+KCG+I+ A++VF G+E D WNAMIGGLA+HG + + ++ +++
Sbjct: 353 LGVALIDMYSKCGSIQHAMLVFEGIENKSIDH--WNAMIGGLAIHGLGESAFDMLLQIER 410
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVT 350
I PD+ITF+G+L+AC+H GLV E F+ + ++ + P+ +HY CMVD LSR+G +
Sbjct: 411 RSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIE 470
Query: 351 EAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD-GRYVGLSNVY 409
A I +MP+EP + + LT C +H + + E+V K L+ LQ D++ YV LSN+Y
Sbjct: 471 LAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLI-LQADYNPSSYVLLSNMY 529
Query: 410 AIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
A F W + R R M+ R ++K PG S++E
Sbjct: 530 ASFGMWKDVRRVRTMMKERKIEKIPGCSWIE 560
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 163/444 (36%), Positives = 242/444 (54%), Gaps = 9/444 (2%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SA LG ++ + + N + + R ++ S +++ LF M+ G PD+
Sbjct: 53 LSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQDMIADGFMPDN 112
Query: 64 LTYPF-LAKASGR---LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
+ LA G A+R VHA I G E D+F+S LI +YG G++ AR
Sbjct: 113 VALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVYGERGEMTVARR 172
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD MPTK +++WN+M+ Y + ++ A ++F MP R+VVSW+ +I GY G KEA
Sbjct: 173 VFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRCKEA 232
Query: 180 LVIFEEMRDVGS---KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
L +F +M S N T+ +VL ACA G L+ G + Y+ ++ L L
Sbjct: 233 LGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCLETGIWVHLYIDKNQMNDNGTLDRCL 292
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
IDMYAKCG+I +AL VF + D+ W +I GLAMHG + L +F+ MQ G+ P
Sbjct: 293 IDMYAKCGSIDKALQVFEKAPG-KRDLYSWTTVICGLAMHGRANDVLRMFSMMQDSGMCP 351
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEF 355
D++TF+G+L+ACAHGGLV E + F S+ ++ + PK EHY CM+D L R G++ EAY
Sbjct: 352 DDVTFVGVLNACAHGGLVDEGLHHFYSMQEKYRITPKIEHYGCMIDLLGRVGRLPEAYRM 411
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
I MP++P + G+ L+ C H ++L EI ++ L PD V +S++YA + W
Sbjct: 412 IQTMPMKPNMVIWGAFLSACKVHSSVELGEIAAAEVTRLDPDDPWARVMMSSMYAKAQDW 471
Query: 416 DEARTTREAMETRGVKKYPGWSFV 439
R M + +KK PG S V
Sbjct: 472 SGLARERREMNSLQMKKTPGCSSV 495
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 84/371 (22%), Positives = 146/371 (39%), Gaps = 77/371 (20%)
Query: 82 AVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
A +H + K G + + +L+ YG+ G +AR++FD MP +
Sbjct: 29 ASGIHCLLFKAGLLHAGAHLPTALLSAYGALGRSGHARDLFDEMPNQ------------- 75
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
++V+ +A+ + G +AL +F++M G + V L
Sbjct: 76 ------------------SLVARTAMARAHAVSGQAAQALDLFQDMIADGFMPDNVALAV 117
Query: 201 VLCACAHLGAL----DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
VL AC G+ GRM+ +++ G+ + + T LI +Y + G + A VF +
Sbjct: 118 VLAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVYGERGEMTVARRVFDSM 177
Query: 257 EK----------HQ-------------------SDVLIWNAMIGGLAMHGFVKESLELFT 287
HQ DV+ WN +I G + G KE+L LF
Sbjct: 178 PTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRCKEALGLFR 237
Query: 288 EM---QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS 344
+M + P+ T +LSACA G + + + K M C++D +
Sbjct: 238 QMVSPSSCTVHPNGPTMSTVLSACAGAGCLETGIWVHLYIDKNQMNDNGTLDRCLIDMYA 297
Query: 345 RAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ-----PDHD 399
+ G + +A + + P + +++ G HG+ A V + +Q PD D
Sbjct: 298 KCGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGR---ANDVLRMFSMMQDSGMCPD-D 353
Query: 400 GRYVGLSNVYA 410
+VG+ N A
Sbjct: 354 VTFVGVLNACA 364
>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/435 (36%), Positives = 248/435 (57%), Gaps = 36/435 (8%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G++D++ +V + + + WNT+I +++ N+++ L ++M R G T
Sbjct: 110 SKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTIS 169
Query: 68 -FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
L + + A E + +HA K + ++F++ +L
Sbjct: 170 SVLCACAAKCALSECQL-LHAFAIKAAMDLNVFVATAL---------------------- 206
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
LD YAKCG M A VFE MP+R+VV+WS++ GYV+ Y++AL +F +
Sbjct: 207 ---------LDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKA 257
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ G K ++ + SV+CACA L A+ +G+ + + G + + +SLIDMYAKCG I
Sbjct: 258 WETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGI 317
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+E+ VF VEK +V++WNAMI GL+ H E + LF +MQ +G++P+++TF+ +LS
Sbjct: 318 EESYKVFRDVEKR--NVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLS 375
Query: 307 ACAHGGLVMEAWYFFKSLGKRG-MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC H GLV + +F + K + P HY+CMVD LSRAGQ+ EAY+ I ++P +A
Sbjct: 376 ACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASA 435
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
SM GSLL C HG L+LAE+ KKL +++P + G Y+ LSN+YA +WDE R+ +
Sbjct: 436 SMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLL 495
Query: 426 ETRGVKKYPGWSFVE 440
+ VKK G S++E
Sbjct: 496 KESDVKKERGKSWIE 510
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 36/281 (12%)
Query: 77 AKRELAV---AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
AKR+L + A HAQI G ++DL SN LI+MY
Sbjct: 75 AKRKLLLQGKACHAQILLMGLKTDLLTSNILINMY------------------------- 109
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
+KCG ++ ARQVF+ MP R++VSW+ +I + G+ EAL + +M+ G+
Sbjct: 110 ------SKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPF 163
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+E T+ SVLCACA AL + +++ + I + L + + T+L+D+YAKCG +K+A+ VF
Sbjct: 164 SEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVF 223
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313
+ V+ W++M G + +++L LF + G+ D+ ++ ACA
Sbjct: 224 ESMP--DRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAA 281
Query: 314 VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
++E L K G + ++D ++ G + E+Y+
Sbjct: 282 MIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYK 322
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 193 ANEVTLV-SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
A V+ V +L CA L QG+ ++ GL L LI+MY+KCG++ A
Sbjct: 61 ATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQ 120
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF E ++ WN MIG L +G E+L+L +MQ G E T +L ACA
Sbjct: 121 VFD--EMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACA 176
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 153/411 (37%), Positives = 238/411 (57%), Gaps = 12/411 (2%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I GY+++ +++ LF ++ P + + A SG + L A +I
Sbjct: 249 WNIMITGYAQNGLLSEARRLFEEL------PIRDVFAWTAMVSGFVQNGMLDEAT--RIF 300
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ E + N++I Y I ARE+FD MP++ + SWN+M+ GYA+CG ++ A+
Sbjct: 301 EEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKI 360
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F+ MP+R+ +SW+A+I GY + G +EAL +F +M+ G N L L +CA + A
Sbjct: 361 LFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAA 420
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L+ G+ + ++ G +L+ MY KCG+I+EA VF + + D++ WN MI
Sbjct: 421 LELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDIT--EKDIVSWNTMI 478
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GM 329
G A HGF KE+L LF M++ I PD++T +G+LSAC+H G V + +F S+ + G+
Sbjct: 479 AGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGI 537
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
++HY CM+D L RAG++ EA + MP P A+ G+LL HG +L E +
Sbjct: 538 TANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAE 597
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
K+ E++PD+ G YV LSN+YA RW E R R M +GVKK PG+S+VE
Sbjct: 598 KVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVE 648
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 113/436 (25%), Positives = 192/436 (44%), Gaps = 76/436 (17%)
Query: 9 YLGNIDYSC--KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM----------LR 56
YL N + C KV + + + WN ++ GY K+ N + + +LF +M +
Sbjct: 101 YLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAML 160
Query: 57 AGVSPDHLTYPFLAKASGRLAKRELA----VAVHAQIAKTGYESDLFIS---------NS 103
+G + + L K E++ ++ + Q + LF S N
Sbjct: 161 SGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNC 220
Query: 104 LIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSW 163
L+ Y + AR +FD MP + +SWN M+ GYA+ G ++ AR++FE +P R+V +W
Sbjct: 221 LMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAW 280
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
+A++ G+V+ G EA IFEEM + NEV+ +++ +++ R + M
Sbjct: 281 TAMVSGFVQNGMLDEATRIFEEM----PEKNEVSWNAMIAGYVQSQQIEKARELFDQMPS 336
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
+ S +++ YA+CG I +A I+F E Q D + W AMI G A G +E+L
Sbjct: 337 RNTS----SWNTMVTGYAQCGNIDQAKILFD--EMPQRDCISWAAMISGYAQSGQSEEAL 390
Query: 284 ELFTEMQIVGITPDEITFLGLLSACA-----------HGGLVM----------------- 315
LF +M+ G + LS+CA HG LV
Sbjct: 391 HLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMY 450
Query: 316 -------EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFI--CQMPLEPTAS 366
EA+ F+ + ++ +V + M+ +R G EA +M ++P
Sbjct: 451 GKCGSIEEAFDVFEDITEKDIVS----WNTMIAGYARHGFGKEALALFESMKMTIKPDDV 506
Query: 367 MLGSLLTGCMNHGKLD 382
L +L+ C + G +D
Sbjct: 507 TLVGVLSACSHTGFVD 522
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 146/298 (48%), Gaps = 23/298 (7%)
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV 161
N++I Y S AR+VF+ MP + +SWN ML GY K G ++ AR +F MPE++VV
Sbjct: 95 NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVV 154
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
SW+A++ G+ + G +EA IF++M NE++ +L A G ++ R +
Sbjct: 155 SWNAMLSGFAQNGFVEEARKIFDQML----VKNEISWNGLLSAYVQNGRIEDARRLF--- 207
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
D + + L+ Y + + +A +F + D + WN MI G A +G + E
Sbjct: 208 -DSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR--DKISWNIMITGYAQNGLLSE 264
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
+ LF E+ I D + ++S G++ EA F+ + ++ V + M+
Sbjct: 265 ARRLFEELPI----RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS----WNAMIA 316
Query: 342 ALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399
++ Q+ +A E QMP T+S +++TG G +D A+I L + P D
Sbjct: 317 GYVQSQQIEKARELFDQMPSRNTSS-WNTMVTGYAQCGNIDQAKI----LFDEMPQRD 369
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 34/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GNID + + + W +I GY++S +++ LF+KM R G +
Sbjct: 353 GNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACAL 412
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ +A EL +H ++ K G+++ N+L+ MYG CG I A +VF+ + K V
Sbjct: 413 SSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIV 472
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+M+ GYA+ G KEAL +FE M+ +
Sbjct: 473 SWNTMIAGYARHGFG-------------------------------KEALALFESMK-MT 500
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
K ++VTLV VL AC+H G +D+G M G++ T +ID+ + G + EA
Sbjct: 501 IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEA 560
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
L + + + D W A++G +HG
Sbjct: 561 LNLMKSMPFY-PDAATWGALLGASRIHG 587
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/426 (37%), Positives = 246/426 (57%), Gaps = 7/426 (1%)
Query: 20 LSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRL--A 77
L+ ++ I W + I S+ +++ F M AG+ P+H+T+ L A G
Sbjct: 13 LNQSTSETIVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNFPSG 72
Query: 78 KRELAVAVHAQIAKTGYE-SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
L +H K G E S + + +++ MY G + AR VFD + K SV+WN+M+
Sbjct: 73 SEGLGYLLHGYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMI 132
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
DGY + G+++ A VF+ MP+R+++SW+A+I G+VK G ++EAL F EM+ G + V
Sbjct: 133 DGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYV 192
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
++S + AC +LGAL G + RY++ + + + SLID+Y +CG ++ A VF +
Sbjct: 193 AIISAVAACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKM 252
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
EK V+ WN++I G A +G ESL F +MQ G TPD +TF G L+AC+H GLV E
Sbjct: 253 EKRT--VVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTACSHVGLVEE 310
Query: 317 AWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
+ +F+ + + P+ EHY C+VD SRAG++ +A+ + MP++P ++GSLL C
Sbjct: 311 GFQYFQMMKHDYRISPRIEHYGCLVDLYSRAGRLEDAFIVVESMPMKPNEVVIGSLLAAC 370
Query: 376 MNHGKLD-LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
NHG LAE + K + +L YV LSN+YA +W+ A R M+ G+KK P
Sbjct: 371 RNHGNHTILAERLMKYITDLDVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQP 430
Query: 435 GWSFVE 440
G+S +E
Sbjct: 431 GYSSIE 436
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 125/268 (46%), Gaps = 33/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + V + + + W +I G+ K ++++ F +M +GV+PD++
Sbjct: 139 GQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAV 198
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L + VH + + +++ +SNSLI +Y CG + +AR+VFD M + V
Sbjct: 199 AACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVV 258
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS++ G+A G N E+LV F +M+ G
Sbjct: 259 SWNSVIVGFAANGNAN-------------------------------ESLVYFRKMQREG 287
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ VT L AC+H+G +++G + M D +S + L+D+Y++ G +++A
Sbjct: 288 FTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRISPRIEHYGCLVDLYSRAGRLEDA 347
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
IV + ++V+I +++ HG
Sbjct: 348 FIVVESMPMKPNEVVI-GSLLAACRNHG 374
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 157/414 (37%), Positives = 236/414 (57%), Gaps = 34/414 (8%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ WN +I Y K+ N + + +F ML GV+ D +T + A GR+ +L V
Sbjct: 185 VVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAE 244
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
+ + G +V R + +++D YAKCGE+
Sbjct: 245 YVDEKG--------------------LVRNRNLM-----------TALIDMYAKCGELGK 273
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
AR++F+ M R+VV+WSA+I GY + +EAL +F EM+ + N+VT+VSVL ACA
Sbjct: 274 ARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAV 333
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
LGAL+ G+ + Y+ K LSLT+ L T+L+D YAKCG I +A+ F + S W
Sbjct: 334 LGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNS--WTWT 391
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327
A+I G+A +G +E+LELF+ M+ I P ++TF+G+L AC+H LV E F S+ +
Sbjct: 392 ALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQD 451
Query: 328 -GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
G+ P++EHY C+VD L RAG + EAY+FI MP+EP A + +LL+ C H +++ E
Sbjct: 452 YGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEE 511
Query: 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
K++V L P H G Y+ LSN+YA +W A R+ M+ RG++K PG S +E
Sbjct: 512 ALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIE 565
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 183/359 (50%), Gaps = 38/359 (10%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFLAKASGRLAKREL 81
LS P +N ++R + +P ++ LFV+ML A V PD T K+ R+ ++
Sbjct: 81 LSTP---CYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDV 137
Query: 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
+ A K G +D F+ +SLIHMY S
Sbjct: 138 GRGIQAYAVKRGLMADRFVLSSLIHMYAS------------------------------- 166
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
C ++ A+ +F+ + E VV W+A+I Y+K G++ E + +F+ M +VG +E+TLVSV
Sbjct: 167 CRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSV 226
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
+ AC +G G+ + Y+ +KGL L T+LIDMYAKCG + +A +F G++
Sbjct: 227 VTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSR-- 284
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
DV+ W+AMI G +E+L LF+EMQ+ + P+++T + +LSACA G + +
Sbjct: 285 DVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVH 344
Query: 322 KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
+ ++ + +VD ++ G + +A E MP++ + + +L+ G +G+
Sbjct: 345 SYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWT-ALIKGMATNGR 402
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 122/287 (42%), Gaps = 35/287 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + + ++ + + + W+ +I GY+++ ++++LF +M A V P+ +T +
Sbjct: 269 GELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVL 328
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L E VH+ I + + + +L+ Y CG I A E F+ MP K S
Sbjct: 329 SACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSW 388
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W +++ G A G +EAL +F MR
Sbjct: 389 TWTALIKGMATNGR-------------------------------GREALELFSSMRKAS 417
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ +VT + VL AC+H +++GR M D G+ ++D+ + G I EA
Sbjct: 418 IEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEA 477
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
F + + +IW A++ A+H V+ E QIV + P
Sbjct: 478 Y-QFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALK--QIVSLNP 521
>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
Length = 597
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 169/510 (33%), Positives = 256/510 (50%), Gaps = 100/510 (19%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
F WN VI+ +S +P +S+ LF ML GVS D + + KA RL + + +H
Sbjct: 71 FLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRLGFVKAGMXIHGF 130
Query: 89 IAKTGYESDLFISNSLIHMYGSCGDIVY-------------------------------A 117
+ KTG SDLF+ N LI +Y CG + Y A
Sbjct: 131 LRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIESA 190
Query: 118 REVFDGMPTKMS----------------------------------VSWNSMLDGYAKCG 143
RE+FD MP +M +SWNSM+DGY K G
Sbjct: 191 RELFDLMPKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWNSMIDGYVKHG 250
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGS---------- 191
+ A+ +F++MP R+V++W+ +IDGY K G +A +F+++ RDV +
Sbjct: 251 RIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQ 310
Query: 192 --------------------KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
+E TLV VL A A LG L + M Y++ K +
Sbjct: 311 NKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVKKQFFIGGK 370
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
L +LIDMY+KCG+I+ A++VF G+E D WNA+IGGLA+HG + ++ +++
Sbjct: 371 LGVALIDMYSKCGSIQHAMLVFKGLENKNIDH--WNAIIGGLAIHGLGGPAFDMLLQIER 428
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVT 350
+ I PD+ITF+G+L+AC+H GLV E F+ + ++ + P+ +HY CMVD LSR+G +
Sbjct: 429 LSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIE 488
Query: 351 EAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410
A I +MP+EP + + LT C +H + ++ E+V K L+ + YV LSN+YA
Sbjct: 489 LAKILIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLILQAGYNPSSYVLLSNMYA 548
Query: 411 IFKRWDEARTTREAMETRGVKKYPGWSFVE 440
W + R R M+ R ++K PG S++E
Sbjct: 549 SCGMWKDVRRVRTMMKERKIQKIPGCSWIE 578
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 123/278 (44%), Gaps = 39/278 (14%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPF 68
LG I + + + + + +N+++ GY ++K +++ LF+KM + + +SPD T
Sbjct: 280 LGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVI 339
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+ A +L + A+ +H I K + + +LI MY CG I +A VF G+ K
Sbjct: 340 VLSAIAQLGRLSKAMDMHFYIVKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLENKN 399
Query: 129 SVSWNSMLDGYAKCG----EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
WN+++ G A G +M Q+ L + + +++ +++ G KE L+ FE
Sbjct: 400 IDHWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPDDITFIGVLNACSHSGLVKEGLLCFE 459
Query: 185 EMR----------------DVGSKA-----------------NEVTLVSVLCACAHLGAL 211
MR D+ S++ N+V + L AC+H
Sbjct: 460 LMRRKHKIEPRLQHYGCMVDILSRSGSIELAKILIEKMPIEPNDVIWRTFLTACSHHKEF 519
Query: 212 DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ G ++ +++I + L +MYA CG K+
Sbjct: 520 EMGELVAKHLILQA-GYNPSSYVLLSNMYASCGMWKDV 556
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 5/186 (2%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY- 66
S G+I ++ V L N I +WN +I G + + + +++ R + PD +T+
Sbjct: 380 SKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPDDITFI 439
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
L S +E + K E L ++ + G I A+ + + MP
Sbjct: 440 GVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKILIEKMPI 499
Query: 127 KMS-VSWNSMLDGYAKCGEMNMARQVFE---LMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ + V W + L + E M V + L N S+ L + Y CG +K+ +
Sbjct: 500 EPNDVIWRTFLTACSHHKEFEMGELVAKHLILQAGYNPSSYVLLSNMYASCGMWKDVRRV 559
Query: 183 FEEMRD 188
M++
Sbjct: 560 RTMMKE 565
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/434 (36%), Positives = 246/434 (56%), Gaps = 35/434 (8%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S GN++ + +V + + I W ++I Y + + +I LF +M GV PD T
Sbjct: 342 SKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVT 401
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A + + VH+ + K G S+L ++N+LI+M
Sbjct: 402 SIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINM-------------------- 441
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
YAKCG + AR VF +P +++VSW+ +I GY + EAL +F +M+
Sbjct: 442 -----------YAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQ 490
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
K +++T+ VL ACA L ALD+GR + +++ +G L + +L+DMYAKCG +
Sbjct: 491 K-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLV 549
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A ++F + K D++ W MI G MHGF E++ F EM+I GI PDE +F +L+A
Sbjct: 550 LAQLLFDMIPK--KDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNA 607
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H GL+ E W FF S+ G+ PK EHYAC+VD L+R G +++AY+FI MP++P +
Sbjct: 608 CSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTT 667
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ G LL+GC H + LAE V + + EL+PD+ YV L+NVYA ++W+E + R+ M+
Sbjct: 668 IWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQ 727
Query: 427 TRGVKKYPGWSFVE 440
RG K+ PG S++E
Sbjct: 728 KRGFKQNPGCSWIE 741
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 187/414 (45%), Gaps = 75/414 (18%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
K+ + N ++F WN ++ Y+K N +S+SLF KM + GV + T+ + K L
Sbjct: 150 KIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALG 209
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
K + VH + K G+ S+ + NSLI Y G + A +FD + VSWNSM++
Sbjct: 210 KVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMIN 269
Query: 138 G-----------------------------------YAKCGEMNMARQV----FELMPER 158
G A G +++ R + +
Sbjct: 270 GCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSE 329
Query: 159 NVVSWSALIDGYVKCGD-------------------------------YKEALVIFEEMR 187
VV + L+D Y KCG+ Y +A+ +F+EM+
Sbjct: 330 EVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQ 389
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G + + T+ S++ ACA +LD+GR + Y+I G+ LP+ +LI+MYAKCG+++
Sbjct: 390 SKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVE 449
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
EA +VF + D++ WN MIGG + + E+LELF +MQ PD+IT +L A
Sbjct: 450 EARLVFSKIP--VKDIVSWNTMIGGYSQNLLPNEALELFLDMQ-KQFKPDDITMACVLPA 506
Query: 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEHYAC-MVDALSRAGQVTEAYEFICQMP 360
CA + + + +RG H AC +VD ++ G + A +P
Sbjct: 507 CAGLAALDKGREIHGHILRRGYFS-DLHVACALVDMYAKCGLLVLAQLLFDMIP 559
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 141/352 (40%), Gaps = 72/352 (20%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VH+ I G D + L+ MY +CGD+V R++FD + WN ++ YAK G
Sbjct: 116 VHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGN 175
Query: 145 MNMARQVFELMPERNVVS---------------------------------------WSA 165
+ +F+ M + VV ++
Sbjct: 176 FRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNS 235
Query: 166 LIDGYVKCGDYKEALVIFEEMRD-------------------------------VGSKAN 194
LI Y K G + A +F+E+ + +G + +
Sbjct: 236 LIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVD 295
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
TLVSVL ACA++G L GR + + + S + +L+DMY+KCG + A VF
Sbjct: 296 LTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVF- 354
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
V+ + ++ W ++I G +++ LF EMQ G+ PD T ++ ACA +
Sbjct: 355 -VKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSL 413
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
+ + K GM +++ ++ G V EA ++P++ S
Sbjct: 414 DKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVS 465
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 102/219 (46%), Gaps = 11/219 (5%)
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL---VSVLCACAHLGALDQGRMMLRY 220
+A I+ + + GD + A+ + + SK+ E+ L SVL CA +L+ G+ +
Sbjct: 65 NAKINKFCEMGDLRNAIELLTK-----SKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSV 119
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+I G+S+ L L+ MY CG + + +F + + V +WN ++ A G +
Sbjct: 120 IISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK--VFLWNLLMSEYAKIGNFR 177
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMV 340
ES+ LF +MQ +G+ + TF +L A G V E + K G + ++
Sbjct: 178 ESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLI 237
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
A + G V A+ ++ EP S++ GC+ +G
Sbjct: 238 AAYFKFGGVESAHNLFDELS-EPDVVSWNSMINGCVVNG 275
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 139/361 (38%), Positives = 218/361 (60%), Gaps = 3/361 (0%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+DY+ + + NP F WN +IR Y+ + N +++ L+ M+ G SPD T+PF+ KA
Sbjct: 80 VDYATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQALLLYNLMICEGFSPDKFTFPFVIKA 139
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+ + VH KTG+ D F+SN+L+ +Y CGD+ YAR++FD M + VSW
Sbjct: 140 CLDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVVSW 199
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
+ + G CGE++ AR F+ MP RNVVSW+A+I+GYVK +EA +F+ M+ +
Sbjct: 200 TTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANVR 259
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
N TLV +L AC LG+L+ GR + Y ++ G + + L T+LIDMY+KCG+I++A V
Sbjct: 260 PNGFTLVGLLRACTELGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKV 319
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F ++K + WN+MI L +HGF KE+L LF +M+ + PD ITF+G+L AC +
Sbjct: 320 FEEMQK--KSLATWNSMITSLGVHGFGKEALALFAQMEEANVRPDAITFVGVLFACVNTN 377
Query: 313 LVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
V + +FK + + G+ P EHY CM++ +RA + E E + MP++ ++ +L
Sbjct: 378 NVEAGYRYFKYMTEHYGITPMLEHYTCMIELYTRAAMLNEVSELVNSMPMKLNSNPAAAL 437
Query: 372 L 372
+
Sbjct: 438 V 438
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 117/269 (43%), Gaps = 36/269 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + + + W +I GY K++ P ++ LF +M A V P+ T L
Sbjct: 210 GELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANVRPNGFTLVGLL 269
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+A L EL +H + G++ +F+ +LI MY CG I A++VF+ M K
Sbjct: 270 RACTELGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKVFEEMQKKSLA 329
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WNSM+ + G+ KEAL +F +M +
Sbjct: 330 TWNSMITSLG--------------------------VHGFG-----KEALALFAQMEEAN 358
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
+ + +T V VL AC + ++ G +YM + G++ L T +I++Y + + E
Sbjct: 359 VRPDAITFVGVLFACVNTNNVEAGYRYFKYMTEHYGITPMLEHYTCMIELYTRAAMLNEV 418
Query: 250 LIVFHG----VEKHQSDVLIWNAMIGGLA 274
+ + + + + L+W ++I A
Sbjct: 419 SELVNSMPMKLNSNPAAALVWPSIIDSNA 447
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 121/286 (42%), Gaps = 34/286 (11%)
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
+++ A +F+ + + +W+ +I Y G+ ++AL+++ M G ++ T V+
Sbjct: 79 KVDYATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQALLLYNLMICEGFSPDKFTFPFVIK 138
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV------- 256
AC ALD+G+ + + I G L +L+D+Y KCG + A +F +
Sbjct: 139 ACLDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVVS 198
Query: 257 ----------------------EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
E +V+ W AMI G + +E+ ELF MQ+ +
Sbjct: 199 WTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANV 258
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
P+ T +GLL AC G + + + G ++D S+ G + +A +
Sbjct: 259 RPNGFTLVGLLRACTELGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKK 318
Query: 355 FICQMPLEPTA---SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397
+M + A SM+ SL G GK LA + ++PD
Sbjct: 319 VFEEMQKKSLATWNSMITSL--GVHGFGKEALALFAQMEEANVRPD 362
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/431 (36%), Positives = 241/431 (55%), Gaps = 34/431 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + ++ K+ + + + WNT+I GYS+ + + LF M A + D +T +
Sbjct: 73 GQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKII 132
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L E A ++ I + E D+++ N+LI MYG
Sbjct: 133 LACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYG--------------------- 171
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+ G + AR++F+ MP+R+V+SW+++I GY + + +A+ +F+EM
Sbjct: 172 ----------RLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAK 221
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K ++VT+ SVL ACAHLG LD G + Y+ G+ + + SLIDMY KCG +++AL
Sbjct: 222 VKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKAL 281
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VFH ++ D + W ++I GLA++GF +L+LF++M G+ P TF+G+L ACAH
Sbjct: 282 EVFHRMK--DKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAH 339
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV + +F+S+ G+VP +HY C+VD LSR+G + +AYEFI +MP+ P +
Sbjct: 340 AGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWR 399
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
LL+ C HG + LAEI K+L+EL P G YV LSN YA RWD+A RE ME
Sbjct: 400 ILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSD 459
Query: 430 VKKYPGWSFVE 440
V+K G S +E
Sbjct: 460 VQKPSGSSSIE 470
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 184/371 (49%), Gaps = 42/371 (11%)
Query: 38 YSKSKNPNKSISLFVKM-LRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYES 96
YS KS LF+ + L + ++P L + + ++ ++H K G+ES
Sbjct: 2 YSPCDRRQKSHFLFIIVALSSTIAPAALVVAL----TTNINASTISSSIHVHALKLGFES 57
Query: 97 DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP 156
LF+SN+LIHMY A CG++ A+++F+ M
Sbjct: 58 YLFVSNALIHMY-------------------------------AMCGQLGFAQKMFDGML 86
Query: 157 ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRM 216
+R++VSW+ LI GY + YKE L +F+ M KA+ VT+V ++ AC+HLG +
Sbjct: 87 DRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADS 146
Query: 217 MLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
M++Y+ + L + + L +LIDMY + G + A +F + K DV+ W +MI G +
Sbjct: 147 MVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKR--DVISWTSMITGYSQA 204
Query: 277 GFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHY 336
++++LF EM + PD++T +LSACAH G + W + + G+
Sbjct: 205 SQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVG 264
Query: 337 ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA-EIVGKKLVE-L 394
++D + G V +A E +M + + S S+++G +G + A ++ + L E +
Sbjct: 265 NSLIDMYCKCGMVEKALEVFHRMKDKDSVSWT-SVISGLAVNGFANSALDLFSQMLREGV 323
Query: 395 QPDHDGRYVGL 405
QP H G +VG+
Sbjct: 324 QPTH-GTFVGI 333
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 127/273 (46%), Gaps = 37/273 (13%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LGN+ + K+ ++ + W ++I GYS++ + ++ LF +M+ A V PD +T +
Sbjct: 173 LGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASV 232
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L K ++ AVH I + G ++D+++ NSLI MY CG + A EVF M K S
Sbjct: 233 LSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDS 292
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSW S++ G A G N AL +F +M
Sbjct: 293 VSWTSVISGLAVNGFAN-------------------------------SALDLFSQMLRE 321
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKE 248
G + T V +L ACAH G +++G M GL + ++D+ ++ G I +
Sbjct: 322 GVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDK 381
Query: 249 ALIVFHGVEKHQ--SDVLIWNAMIGGLAMHGFV 279
A + ++K DV++W ++ +HG V
Sbjct: 382 A---YEFIKKMPIVPDVVVWRILLSACKLHGNV 411
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/432 (37%), Positives = 247/432 (57%), Gaps = 3/432 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
G + + KV + + WN++I GY + K + LF +M V D +T
Sbjct: 120 FGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKA 179
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A+ L++ E+ + I + G DL++ N+LI MYG G I +A VF M K
Sbjct: 180 ISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNI 239
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSWN+M+ GYAK G + A+++F MP R+V+SW+++I GY + EA+ +F+EM
Sbjct: 240 VSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVS 299
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
K +E+T+ + L ACAHLG+LD G + Y+ + + + SLIDMY KCG +++A
Sbjct: 300 MVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKA 359
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
L VF+ ++ D + W ++I GLA++GF + +L +F +M GI P TF+G+L ACA
Sbjct: 360 LQVFNDMKTR--DSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACA 417
Query: 310 HGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV + FKS+ + P+ +HY C+VD L R+G + AY FI +MP+ P +
Sbjct: 418 HVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIW 477
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
LL+ C HG L LAEIV KKL+ L P ++G YV S+ YA RWD+ R+ ME
Sbjct: 478 RILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVT 537
Query: 429 GVKKYPGWSFVE 440
++K +S +E
Sbjct: 538 NLQKPCAYSSIE 549
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/422 (28%), Positives = 198/422 (46%), Gaps = 72/422 (17%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
V + + P + WN +I G SKS PN +I + M G+ HLT+ FL K+ R++
Sbjct: 28 VFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSD 87
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
V K G+ES F+SN+LIHMY
Sbjct: 88 VRQGQMVRVHSMKLGFESXSFVSNALIHMY------------------------------ 117
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
GE+ MA++VF+ M ER+VVSW+++I GY + +K+ L +F EM+ + +A+ VT+
Sbjct: 118 -VCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTM 176
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
+ + A L + G +++Y+ + G+ + L L +LIDMY + G I A VF+ ++
Sbjct: 177 MKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMK- 235
Query: 259 HQSDVLIWNAMIGGLAMHGFV-------------------------------KESLELFT 287
+ +++ WNAMI G A G + E+++LF
Sbjct: 236 -EKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQ 294
Query: 288 EMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYA--CMVDALSR 345
EM + + PDEIT LSACAH G + + K + KS+ + ++D +
Sbjct: 295 EMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDI--KSDVFVGNSLIDMYCK 352
Query: 346 AGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRYV 403
G V +A + M + S S+++G +G + A V ++++ + P H G +V
Sbjct: 353 CGVVEKALQVFNDMKTRDSVS-WTSIISGLAVNGFAESALNVFDQMLKEGICPTH-GTFV 410
Query: 404 GL 405
G+
Sbjct: 411 GV 412
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 109/256 (42%), Gaps = 15/256 (5%)
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
A VF + ++ W+ +I G K +A+ + M G + + +T + + +CA
Sbjct: 25 AHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCAR 84
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
+ + QG+M+ + + G + +LI MY G + A VF G+ + DV+ WN
Sbjct: 85 VSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGML--ERDVVSWN 142
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW----YFFKS 323
++I G K+ L+LF EMQ + + D +T + +SA + W Y K
Sbjct: 143 SIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATC----FLSEWEMGDYLVKY 198
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+ + G+V ++D R G + A QM E +++ G G L
Sbjct: 199 IDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMK-EKNIVSWNAMIMGYAKVGNL-- 255
Query: 384 AEIVGKKLVELQPDHD 399
+ KKL P D
Sbjct: 256 --VAAKKLFNEMPSRD 269
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/435 (36%), Positives = 250/435 (57%), Gaps = 7/435 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
N++ + L+ ++ I W + I S+ ++ F M AG+ P+H+T+ L
Sbjct: 16 NNVNPKIQKLNQSTSETIVSWTSRITLLSRDDRLAEAAREFSDMRLAGIEPNHITFISLL 75
Query: 71 KASGRLAKRELAVA--VHAQIAKTGYE-SDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
A G A++ +H K G + S + + +++ MY G + AR VFD M K
Sbjct: 76 SACGNFPSGSEALSDLLHGYACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYMEDK 135
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
SV+WN+M+DGY + G+++ A +VF+ MPER+++SW+A+I G+VK G ++EAL F EM+
Sbjct: 136 NSVTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREMQ 195
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G + V +++ L AC +LGAL G RY++ + + + SLID+Y +CG ++
Sbjct: 196 ISGVNPDYVAIIAALAACTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVE 255
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VF +EK V+ WN++I G A +G ESL F +MQ G PD +TF G L+A
Sbjct: 256 FARQVFDTMEKRT--VVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGALTA 313
Query: 308 CAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H GLV E + +F+ + + P+ EH+ C+VD SRAG++ +A + + MP++P
Sbjct: 314 CSHVGLVEEGFQYFQMMKTDYRISPRIEHFGCLVDLYSRAGRLEDAIKVVESMPMKPNEV 373
Query: 367 MLGSLLTGCMNHGKLD-LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
++GSLL C NHG LAE + K + +L YV LSN+YA +W+ A R M
Sbjct: 374 VIGSLLAACRNHGNHTILAERLMKHISDLDVKGHSNYVILSNMYAADGKWEGASKMRRKM 433
Query: 426 ETRGVKKYPGWSFVE 440
+ G+KK PG+S +E
Sbjct: 434 KGLGLKKQPGYSSIE 448
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/419 (36%), Positives = 235/419 (56%), Gaps = 34/419 (8%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82
S I W +I GY + + + LFV+M+ V P+ +T L + G + +L
Sbjct: 192 FSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLG 251
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+HA I + G+ L ++ +L+ MYG CG+I AR +FD M K ++W +M+ YA+
Sbjct: 252 KRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQ- 310
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
C DY A +F +MRD G + NE+T+VS+L
Sbjct: 311 ----------------------------ANCIDY--AFQLFVQMRDNGVRPNELTMVSLL 340
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
CA GALD G+ Y+ +G+ + + L+T+LIDMYAKCG I A +F E D
Sbjct: 341 SLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFS--EAIDRD 398
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF- 321
+ WN M+ G MHG+ +++L+LFTEM+ +G+ P++ITF+G L AC+H GLV+E F
Sbjct: 399 ICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFE 458
Query: 322 KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
K + G+VPK EHY CMVD L RAG + EAY+ I MP+ P ++ G++L C H
Sbjct: 459 KMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNS 518
Query: 382 DLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++ E+ ++L+ L+P + G V +SN+YA RW++ R+A++ G+KK PG S +E
Sbjct: 519 NMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIE 577
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 170/317 (53%), Gaps = 13/317 (4%)
Query: 43 NPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISN 102
+P +++ + M + + D P + KA +++ + +H K G SD+F+ N
Sbjct: 89 HPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVN 148
Query: 103 SLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVS 162
+L+ MY CG +V AR +FD M + VSW++M+ Y +F +R++VS
Sbjct: 149 ALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYI---------TLFYGFSQRSIVS 199
Query: 163 WSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI 222
W+A+I GY++C D +E +F M + N++T++S++ +C +GA+ G+ + Y++
Sbjct: 200 WTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYIL 259
Query: 223 DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKES 282
G ++L L T+L+DMY KCG I+ A +F ++ DV+ W AMI A + +
Sbjct: 260 RNGFGMSLALATALVDMYGKCGEIRSARAIFDSMK--NKDVMTWTAMISAYAQANCIDYA 317
Query: 283 LELFTEMQIVGITPDEITFLGLLSACA-HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
+LF +M+ G+ P+E+T + LLS CA +G L M W F + K+G+ ++D
Sbjct: 318 FQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKW-FHAYIDKQGVEVDVILKTALID 376
Query: 342 ALSRAGQVTEAYEFICQ 358
++ G ++ A +
Sbjct: 377 MYAKCGDISGAQRLFSE 393
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/432 (37%), Positives = 247/432 (57%), Gaps = 3/432 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
G + + KV + + WN++I GY + K + LF +M V D +T
Sbjct: 161 FGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKA 220
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A+ L++ E+ + I + G DL++ N+LI MYG G I +A VF M K
Sbjct: 221 ISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNI 280
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSWN+M+ GYAK G + A+++F MP R+V+SW+++I GY + EA+ +F+EM
Sbjct: 281 VSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVS 340
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
K +E+T+ + L ACAHLG+LD G + Y+ + + + SLIDMY KCG +++A
Sbjct: 341 MVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKA 400
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
L VF+ ++ D + W ++I GLA++GF + +L +F +M GI P TF+G+L ACA
Sbjct: 401 LQVFNDMKTR--DSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACA 458
Query: 310 HGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV + FKS+ + P+ +HY C+VD L R+G + AY FI +MP+ P +
Sbjct: 459 HVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIW 518
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
LL+ C HG L LAEIV KKL+ L P ++G YV S+ YA RWD+ R+ ME
Sbjct: 519 RILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVT 578
Query: 429 GVKKYPGWSFVE 440
++K +S +E
Sbjct: 579 NLQKPCAYSSIE 590
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 119/422 (28%), Positives = 196/422 (46%), Gaps = 72/422 (17%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
V + + P + WN +I G SKS PN +I + M G+ HLT+ FL K+ R++
Sbjct: 69 VFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSD 128
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
V K G+ES LF+SN+LIHMY G++ A++VFDGM + VSWNS
Sbjct: 129 VRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNS---- 184
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
+I GY + +K+ L +F EM+ + +A+ VT+
Sbjct: 185 ---------------------------IICGYYQFNRFKKVLDLFREMQAINVRADSVTM 217
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
+ + A L + G +++Y+ + G+ + L L +LIDMY + G I A VF+ ++
Sbjct: 218 MKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMK- 276
Query: 259 HQSDVLIWNAMIGGLAMHGFV-------------------------------KESLELFT 287
+ +++ WNAMI G A G + E+++LF
Sbjct: 277 -EKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQ 335
Query: 288 EMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYA--CMVDALSR 345
EM + + PDEIT LSACAH G + + K + KS+ + ++D +
Sbjct: 336 EMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDI--KSDVFVGNSLIDMYCK 393
Query: 346 AGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRYV 403
G V +A + M + S S+++G +G + A V ++++ + P H G +V
Sbjct: 394 CGVVEKALQVFNDMKTRDSVS-WTSIISGLAVNGFAESALNVFDQMLKEGICPTH-GTFV 451
Query: 404 GL 405
G+
Sbjct: 452 GV 453
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 110/256 (42%), Gaps = 15/256 (5%)
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
A VF + ++ W+ +I G K +A+ + M G + + +T + + +CA
Sbjct: 66 AHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCAR 125
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
+ + QG+M+ + + G L + +LI MY G + A VF G+ + DV+ WN
Sbjct: 126 VSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGML--ERDVVSWN 183
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW----YFFKS 323
++I G K+ L+LF EMQ + + D +T + +SA + W Y K
Sbjct: 184 SIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATC----FLSEWEMGDYLVKY 239
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+ + G+V ++D R G + A QM E +++ G G L
Sbjct: 240 IDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMK-EKNIVSWNAMIMGYAKVGNL-- 296
Query: 384 AEIVGKKLVELQPDHD 399
+ KKL P D
Sbjct: 297 --VAAKKLFNEMPSRD 310
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 171/502 (34%), Positives = 262/502 (52%), Gaps = 72/502 (14%)
Query: 9 YLGNIDYSCKVLSHLS-NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
++G +DY+ L+ + +NT+I Y+ S P + ++ +++ G PD T+P
Sbjct: 50 HIGFVDYAFDFLNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFP 109
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ KA + + VH K G+ DL++ NSL+H Y CG A VFD M +
Sbjct: 110 VVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVR 169
Query: 128 MSVSWNSMLDGYAK-----------------------------CGEM---NMARQVFELM 155
VSW ++ GY + CG M +M + V L+
Sbjct: 170 DVVSWTGLISGYVRTGLFDEAINLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLV 229
Query: 156 PER----NVVSWSALIDGYVKCGDYKEALVIFEEM--RDV-------------------- 189
+R +V +AL+D YVKC EA +F+E+ RD+
Sbjct: 230 YKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSL 289
Query: 190 ---------GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
G + + + L SVL ACA LGALD GR + Y+ +G+ + + T+L+DMY
Sbjct: 290 ELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMY 349
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG I+ AL +F+G+ ++ WNA++GGLAMHG E+L+ F M GI P+E+T
Sbjct: 350 AKCGCIEMALHIFNGIP--NRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVT 407
Query: 301 FLGLLSACAHGGLVMEAW-YFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
FL +L+AC H GLV E YF++ + + P+ EHY CM+D L RAG + EAY+FI
Sbjct: 408 FLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRN 467
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MPL P + G+LL+ C +G ++L++ + L+EL+ G YV LSN+YA +RWD+
Sbjct: 468 MPLPPDVLIWGALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDV 527
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R M+ +G++K+PG S +E
Sbjct: 528 TRVRRLMKDKGIRKFPGSSVIE 549
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 173/482 (35%), Positives = 252/482 (52%), Gaps = 74/482 (15%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQI 89
+N +IR + ++ +P ++ LFV+ML VSPD T K+ R+ + V A
Sbjct: 138 YNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYA 197
Query: 90 AKTGYESDLFISN-------------------------------SLIHMYGSCGDIVYAR 118
K G+ D F+ N ++I Y GD
Sbjct: 198 FKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVV 257
Query: 119 EVFDGM---------PTKMSVS-------------W-----------------NSMLDGY 139
E+F GM T +SV+ W +++D Y
Sbjct: 258 EMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMY 317
Query: 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLV 199
AKCGE++ AR++F+ M R+VV+WSA+I GY + +EAL IF EM+ N+VT+V
Sbjct: 318 AKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMV 377
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
SVL ACA LGAL+ G+ + Y+ K L LT+ L T+L+D YAKCG IK+A+ F +
Sbjct: 378 SVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVR 437
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
+ W A+I G+A +G +E+LELF+ M I P ++TF+G+L AC+HG LV E
Sbjct: 438 NT--WTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRR 495
Query: 320 FFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNH 378
F S+ + G+ P+ EHY CMVD L RAG + EAY+FI MP+EP A + +LL+ C H
Sbjct: 496 HFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVH 555
Query: 379 GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSF 438
+++ E K++V L P H G Y+ LSN YA +W A R+ M+ +GV+K PG S
Sbjct: 556 KNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSL 615
Query: 439 VE 440
+E
Sbjct: 616 IE 617
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 123/287 (42%), Gaps = 35/287 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + ++ + + + W+ +I GY++S +++++F +M V+P+ +T +
Sbjct: 321 GELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVL 380
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L E VH+ I + + + +L+ Y CG I A + F+ MP + +
Sbjct: 381 SACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTW 440
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W +++ G A G +EAL +F M +
Sbjct: 441 TWTALIKGMASNGR-------------------------------SREALELFSSMLEAN 469
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ +VT + VL AC+H +++GR M D G+ + ++D+ + G I EA
Sbjct: 470 IEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEA 529
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
+ + + ++W A++ +H V+ E QIV + P
Sbjct: 530 YQFIRNMPI-EPNAVVWRALLSACTVHKNVEIGEEALK--QIVPLDP 573
>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 500
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 218/362 (60%), Gaps = 4/362 (1%)
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
L +H+ I + G SD +S SLI Y SCG + AR VFD K WN M+ GY
Sbjct: 87 LGPQLHSVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTDKDIFCWNVMISGYV 146
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DVGSKANEVTLV 199
K G + AR++F++MP RNVVSW+ +I Y + EA+ +F M+ + G + + V L+
Sbjct: 147 KSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVALL 206
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
SVL AC LGA+D G + R+++ +GL +PL ++IDMY K G +++A+ VF G++
Sbjct: 207 SVLSACGDLGAVDLGEWVHRFVVRRGLCWQIPLMNAIIDMYVKLGCVRKAVEVFEGMD-- 264
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV-MEAW 318
Q V+ W +I G A+HG E++E+F M++ + P+++TFL +LSAC+H GL + W
Sbjct: 265 QKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFLAILSACSHVGLTDLGRW 324
Query: 319 YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNH 378
YF + + + + EHY CMVD L RAG + EA + + MP + A++ G+LL H
Sbjct: 325 YFKIMVSQYRIKQRVEHYGCMVDLLGRAGYLMEAQDLVQDMPFKANAAIWGALLAAARTH 384
Query: 379 GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSF 438
G +L + L+EL+P + G Y+ LSN+YA +RWD+ R+ M+ RG++ PG S
Sbjct: 385 GDAELGKQALLHLIELEPHNSGNYILLSNIYAEQERWDDVSKLRKQMKDRGLRNVPGASS 444
Query: 439 VE 440
+E
Sbjct: 445 IE 446
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 121/300 (40%), Gaps = 65/300 (21%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKS----------------------------- 41
G + + V ++ IF WN +I GY KS
Sbjct: 118 GRVASARSVFDQTTDKDIFCWNVMISGYVKSGNLACARELFDVMPARNVVSWTTVIGAYA 177
Query: 42 --KNPNKSISLFVKM-LRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDL 98
K P +++ +F +M + G+ PD + + A G L +L VH + + G +
Sbjct: 178 QMKQPVEAVEVFRRMQVEEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLCWQI 237
Query: 99 FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
+ N++I MY G + A EVF+GM K V+W +++ G+A G A ++F M
Sbjct: 238 PLMNAIIDMYVKLGCVRKAVEVFEGMDQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEME 297
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
NV N+VT +++L AC+H+G D GR
Sbjct: 298 NVAP-------------------------------NDVTFLAILSACSHVGLTDLGRWYF 326
Query: 219 RYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
+ M+ + + + ++D+ + G + EA + + +++ IW A++ HG
Sbjct: 327 KIMVSQYRIKQRVEHYGCMVDLLGRAGYLMEAQDLVQDM-PFKANAAIWGALLAAARTHG 385
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 86/188 (45%), Gaps = 9/188 (4%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG + + +V + + W TVI G++ ++I +F +M V+P+ +T+ +
Sbjct: 250 LGCVRKAVEVFEGMDQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFLAI 309
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISN--SLIHMYGSCGDIVYAREVFDGMPTK 127
A + +L + +I + Y + + ++ + G G ++ A+++ MP K
Sbjct: 310 LSACSHVGLTDLG-RWYFKIMVSQYRIKQRVEHYGCMVDLLGRAGYLMEAQDLVQDMPFK 368
Query: 128 MSVS-WNSMLDGYAKCGEMNMARQ----VFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ + W ++L G+ + +Q + EL P N ++ L + Y + + + +
Sbjct: 369 ANAAIWGALLAAARTHGDAELGKQALLHLIELEPH-NSGNYILLSNIYAEQERWDDVSKL 427
Query: 183 FEEMRDVG 190
++M+D G
Sbjct: 428 RKQMKDRG 435
>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/433 (35%), Positives = 244/433 (56%), Gaps = 1/433 (0%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G +D + V + N + W T+I GY + + N+++ ++ M+ AG P+ +
Sbjct: 275 SKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMV 334
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
L GR + + + K G++ FI +++IH+Y +CG I A F +
Sbjct: 335 DLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKE 394
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
SWN+++ GY + ++ A ++F MPER+V SWS +I GY + AL +F +M
Sbjct: 395 NVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMV 454
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G K NEVT+VSVL A A G L +GR Y+ + ++++ L ++IDMYAKCG+I
Sbjct: 455 ASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSIN 514
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
AL VF+ + + S V WNA+I GLA+HG SL++F++++ I + ITF+G+L+A
Sbjct: 515 NALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLTA 574
Query: 308 CAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C H GLV F S+ + + P +HY CMVD L RAG++ EA E I MP++
Sbjct: 575 CCHVGLVESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMKADVV 634
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ G+LL C HG +D+ E + L L+P H V LSN+YA +W++A R AM+
Sbjct: 635 IWGTLLAACRTHGNVDVGERAAENLARLEPSHGASRVLLSNMYADAGKWEDAFLVRRAMQ 694
Query: 427 TRGVKKYPGWSFV 439
+ +++ PG+S V
Sbjct: 695 SHRMQRLPGYSGV 707
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/431 (27%), Positives = 210/431 (48%), Gaps = 37/431 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +DY+C++ + + T+I G+S+++ N+++ LF +M GV P+ +T L
Sbjct: 146 GQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATLV 205
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A +H + K +E + +S +L+ MY C +V AR +FD MP K V
Sbjct: 206 SAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIV 265
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN ML+GY+K G ++ AR VFE +P +++V+W +IDGYV+ EAL+++ M G
Sbjct: 266 SWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAG 325
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ N+V +V ++ C A+ +G+ +L ++ G +Q+++I +YA CG I EA
Sbjct: 326 WEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEAC 385
Query: 251 IVFHGVEKH-----------------------------QSDVLIWNAMIGGLAMHGFVKE 281
+ F K + DV W+ MI G +
Sbjct: 386 LQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNL 445
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
+LELF +M GI P+E+T + +LSA A G + E + + + + A ++D
Sbjct: 446 ALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIID 505
Query: 342 ALSRAGQVTEAYEFICQMPLE-PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400
++ G + A E ++ + T S +++ G HG +L+ +++ D +
Sbjct: 506 MYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGHANLS-------LKIFSDLER 558
Query: 401 RYVGLSNVYAI 411
R++ L+ + I
Sbjct: 559 RHIKLNAITFI 569
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 164/323 (50%), Gaps = 13/323 (4%)
Query: 38 YSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVA----VHAQIAKTG 93
+ + +NP ++ +L H Y + ++ + L ++ +H ++K+G
Sbjct: 40 FQQQENPFLHLN---SLLNPKTGQRHFNYELVLVSALKFCSDHLFLSQGKQIHCLVSKSG 96
Query: 94 YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFE 153
S+ FI NSLI+MYG CG +V A+ +FD P VS+N M+ GY K G+++ A ++F+
Sbjct: 97 LGSNNFIQNSLINMYGKCGLLVDAKSIFDVCPRSDPVSYNVMISGYVKSGQLDYACELFD 156
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
MP + VS++ +I G+ + + +A+ +F++MR+VG NEVT+ +++ A +H G +
Sbjct: 157 EMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWA 216
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
RM+ +I + + T+L+ MY C ++ EA +F E + +++ WN M+ G
Sbjct: 217 CRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFD--EMPEKNIVSWNVMLNGY 274
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS 333
+ GFV + +F + D +T+ ++ + EA ++S+ G P
Sbjct: 275 SKAGFVDSARVVFERIP----NKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPND 330
Query: 334 EHYACMVDALSRAGQVTEAYEFI 356
++ R +TE + +
Sbjct: 331 VMMVDLISGCGRTMAMTEGQQLL 353
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/414 (37%), Positives = 236/414 (57%), Gaps = 3/414 (0%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ WN++I GYS+ + ++LF M V D +T + A L +A +
Sbjct: 476 VVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVR 535
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
I + E D+++ N+LI Y G + A +VF M K +V+ N+M+ YAK G +
Sbjct: 536 YIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVS 595
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
A+++F+ +P ++++SWS++I Y + + ++L +F +M+ K + V + SVL ACAH
Sbjct: 596 AKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAH 655
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
LGALD G+ + Y+ + ++ SLIDM+AKCG ++EAL VF E + D L WN
Sbjct: 656 LGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVF--TEMEEKDTLSWN 713
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK- 326
++I GLA +GF E+L +F M G P+E+TFLG+L ACA+ LV E F+ +
Sbjct: 714 SIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTV 773
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
+ P+ +HY C+V LSRAGQ+ +A FI +MPL P + LL C HG + +AE+
Sbjct: 774 HNLEPQMKHYGCVVGILSRAGQLEKAKNFINEMPLAPDPVVWRILLGACKTHGNVAVAEV 833
Query: 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
KKL EL P + G Y+ LSN+YA RW +A R+ M V+K P S V+
Sbjct: 834 ATKKLSELDPSNSGDYMLLSNIYASADRWSDALNVRQWMADTAVRKSPACSVVD 887
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 194/317 (61%), Gaps = 2/317 (0%)
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
MP K VSWN ++ G+A GE+ AR +F+ MP RNVVSW+ LIDGY + Y EA+ +F
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
M G +E+T+++V+ A ++LG + G M+ Y + KG+ + SLID+YAK
Sbjct: 61 RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G+++ +L VF + + +++ W ++I G AMHG E+LELF EM+ GI P+ ITFL
Sbjct: 121 GSVQNSLKVFDEMLDRR-NLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLS 179
Query: 304 LLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+++AC+HGGLV + FFKS+ + + P+ +H+ C++D L RAG++ EA + I +P+E
Sbjct: 180 VINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVE 239
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
+ LL C +G++++ + K + +L+ + G + LSNV R+ +A R
Sbjct: 240 VNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQAR 299
Query: 423 EAMETRGVKKYPGWSFV 439
+ ++ R + K PG + V
Sbjct: 300 KLLDERKIVKVPGLALV 316
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 191/399 (47%), Gaps = 61/399 (15%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
++ KV + +P F WNT++RG ++S P +I + K G+ PD++T+PF+ KA
Sbjct: 362 FAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACA 421
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
+ + +H+ + K G+ D+F+SNSLIH+Y +CGD+V AR +FD M K VSWNS
Sbjct: 422 KTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNS 481
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ GY+ +RN +KE L +FE M+ +A+
Sbjct: 482 LIGGYS----------------QRN---------------RFKEVLALFELMQAEEVQAD 510
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
+VT+V V+ AC HLG M+RY+ + + + L +LID Y + G ++ A VF
Sbjct: 511 KVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFS 570
Query: 255 GVEKHQS-----------------------------DVLIWNAMIGGLAMHGFVKESLEL 285
++ + D++ W++MI + +SLEL
Sbjct: 571 QMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLEL 630
Query: 286 FTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSR 345
F +MQ + PD + +LSACAH G + + + + + + ++D ++
Sbjct: 631 FRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAK 690
Query: 346 AGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
G + EA + +M + T S S++ G N+G D A
Sbjct: 691 CGCMQEALQVFTEMEEKDTLS-WNSIILGLANNGFEDEA 728
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 133/285 (46%), Gaps = 37/285 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+Y+ + + + W +I GY+++ ++++LF M+ G+SP +T +
Sbjct: 20 GEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVV 79
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS- 129
A L + +H K G SD + NSLI +Y G + + +VFD M + +
Sbjct: 80 PAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNL 139
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSW S++ G+A G EAL +F EMR
Sbjct: 140 VSWTSIISGFAMHGL-------------------------------SVEALELFAEMRRA 168
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKE 248
G + N +T +SV+ AC+H G ++QG + M+ + + + +IDM + G + E
Sbjct: 169 GIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCE 228
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV---KESLELFTEMQ 290
A + G+ + +V++W ++G + +G V K ++++ ++++
Sbjct: 229 AEQIIEGLPV-EVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLE 272
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 122/256 (47%), Gaps = 7/256 (2%)
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
++ A +VFE + W+ L+ G + K+A+V +++ ++ G K + +T VL
Sbjct: 359 DLVFAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLK 418
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
ACA A +G M ++I G L + + SLI +YA CG + A +F E DV
Sbjct: 419 ACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFD--EMLVKDV 476
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
+ WN++IGG + KE L LF MQ + D++T + ++SAC H G A +
Sbjct: 477 VSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRY 536
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+ + + ++D R GQ+ A + QM + T + L +++ G L
Sbjct: 537 IERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVT-LNAMIHAYAKGGNL-- 593
Query: 384 AEIVGKKLVELQPDHD 399
+ KK+ + P+ D
Sbjct: 594 --VSAKKIFDQIPNKD 607
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 119/270 (44%), Gaps = 33/270 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN+ + K+ + N + W+++I YS++ + + S+ LF +M RA V PD + +
Sbjct: 591 GNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVL 650
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L +L +H + + ++D + NSLI M+ CG + A +VF M K ++
Sbjct: 651 SACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTL 710
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS++ G A G FE EAL IF M G
Sbjct: 711 SWNSIILGLANNG--------FE-----------------------DEALNIFYSMLTEG 739
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ NEVT + VL ACA+ + +G M L + ++ + ++ G +++A
Sbjct: 740 PRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKA 799
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
F D ++W ++G HG V
Sbjct: 800 K-NFINEMPLAPDPVVWRILLGACKTHGNV 828
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/434 (37%), Positives = 245/434 (56%), Gaps = 38/434 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + K+ + + WN +I GY+++ N +++ LF +M++ + PD T +
Sbjct: 214 GYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVV 273
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + EL VH+ I G+ S+L I NSL
Sbjct: 274 SACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSL-------------------------- 307
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+D Y+KCGE+ A +FE + ++V+SW+ LI GY YKEAL++F+EM G
Sbjct: 308 -----MDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 362
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTL---PLQTSLIDMYAKCGAIK 247
+ N+VT++S+L ACAHLGA+D GR + Y IDK L L+TSLIDMYAKCG I+
Sbjct: 363 ERPNDVTMLSILPACAHLGAIDIGRWIHVY-IDKRLKSATNASSLRTSLIDMYAKCGDIE 421
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VF+ + H+S + WNAMI G AMHG + ++F+ M+ +GI PD+ITF+GLLSA
Sbjct: 422 AAHQVFNSI-LHKS-LSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSA 479
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+ G++ + F+++ + + PK EHY CM+D L +G EA E I M +EP
Sbjct: 480 CSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGV 539
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ SLL C G ++L E + L++++P++ G YV LSN+YA RW+E R +
Sbjct: 540 IWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLN 599
Query: 427 TRGVKKYPGWSFVE 440
+G+KK PG S +E
Sbjct: 600 DKGMKKVPGCSSIE 613
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 130/401 (32%), Positives = 224/401 (55%), Gaps = 8/401 (1%)
Query: 9 YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPF 68
+ + Y+ V + P + WNT+ RG++ S +P ++ L+V M+ G+ P+ T+PF
Sbjct: 80 HFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPF 139
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
L K+ + + +H + K GY+ DLF+ SLI +Y G + AR+VFD P +
Sbjct: 140 LLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRD 199
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
VS+ +++ GYA G + A+++F+ +P ++VVSW+A+I GY + G+YKEAL +F+EM
Sbjct: 200 VVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMK 259
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
+ +E T+V+V+ ACA G+++ GR + ++ D G L + SL+D+Y+KCG ++
Sbjct: 260 TNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELET 319
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A +F G+ DV+ WN +IGG KE+L LF EM G P+++T L +L AC
Sbjct: 320 ACGLFEGLL--YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPAC 377
Query: 309 AHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
AH G + + + KR S ++D ++ G + A++ + L + S
Sbjct: 378 AHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLS 436
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKL--VELQPDHDGRYVGL 405
+++ G HG+ D A + ++ + ++PD D +VGL
Sbjct: 437 SWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPD-DITFVGL 476
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 135/302 (44%), Gaps = 37/302 (12%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G ++ +C + L + WNT+I GY+ +++ LF +MLR+G P+ +T
Sbjct: 312 SKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTML 371
Query: 68 FLAKASGRLAKRELAVAVHAQIAK--TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ A L ++ +H I K + + SLI MY CGDI A +VF+ +
Sbjct: 372 SILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSIL 431
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
K SWN+M+ G+A G + A IF
Sbjct: 432 HKSLSSWNAMIFGFAMHGRAD-------------------------------AAFDIFSR 460
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCG 244
MR +G + +++T V +L AC+ G LD GR + R M D ++ L +ID+ G
Sbjct: 461 MRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSG 520
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
KEA + + +E + D +IW +++ + G V E E F + ++ I P+ L
Sbjct: 521 LFKEAEEMINNMEM-EPDGVIWCSLLKACKIRGNV-ELGESFAQ-NLIKIEPENPGCYVL 577
Query: 305 LS 306
LS
Sbjct: 578 LS 579
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 125/297 (42%), Gaps = 57/297 (19%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+HAQ+ KTG + + + L+ ++ FDG+P +S
Sbjct: 52 IHAQMIKTGLHNTNYALSKLL-------ELCVISPHFDGLPYAIS--------------- 89
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
VFE + E N++ W+ + G+ D AL ++ M +G N T +L +
Sbjct: 90 ------VFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKS 143
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG--------- 255
CA A +G+ + +++ G L L + TSLI +Y + G +++A VF
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSY 203
Query: 256 ------------VEKHQ--------SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
+E Q DV+ WNAMI G A G KE+LELF EM I
Sbjct: 204 TALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIR 263
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352
PDE T + ++SACA G + + G + ++D S+ G++ A
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETA 320
>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 558
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/431 (37%), Positives = 247/431 (57%), Gaps = 39/431 (9%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
++ Y+ V S + +P +NT+IR +S+ P+ S+S F M G+ D+ T+PF+ K
Sbjct: 37 SLSYARYVFSRIPSPDTIAYNTIIRSHSRFF-PSHSLSYFFSMRSNGIPLDNFTFPFVLK 95
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A RL ++ + +H+ I K G SD+F+ N+LI +YG
Sbjct: 96 ACSRL---QINLHLHSLIVKYGLGSDIFVQNALICVYG---------------------- 130
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DVG 190
CG + MA +VF+ M ER+ VSWS +I ++ G EAL +FE+M+ +
Sbjct: 131 ---------YCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDK 181
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+EVT++SV+ A +HLG L+ GR + ++ G +++ L T+LIDM+++CG+I E++
Sbjct: 182 VVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESI 241
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+VF + +VL W A+I GL +HG E+L +F M+ G+ PD +TF G+L AC+H
Sbjct: 242 VVFEKMAVR--NVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACSH 299
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GGLV E W F+S+ K GM P +HY CMVD L RAG + EAY+F+ +MP++P + +
Sbjct: 300 GGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWR 359
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C+NH L LAE V K+ ++ +G V LSNVY RW E + R M +
Sbjct: 360 TLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKR 419
Query: 430 VKKYPGWSFVE 440
+ K PG S +
Sbjct: 420 IGKEPGCSSIN 430
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 117/273 (42%), Gaps = 38/273 (13%)
Query: 9 YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYP 67
Y G+++ + KV +S W+TVI + + ++++ LF KM L V PD +T
Sbjct: 131 YCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTML 190
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A L EL V A I + G+ + + +LI M+ CG I + VF+ M +
Sbjct: 191 SVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVR 250
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
++W +ALI+G G EAL +F MR
Sbjct: 251 NVLTW-------------------------------TALINGLGIHGRSMEALAMFHSMR 279
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAI 246
G + + VT VL AC+H G + +G + + G+ L ++D+ + G +
Sbjct: 280 KSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLL 339
Query: 247 KEALIVFHGVEK--HQSDVLIWNAMIGGLAMHG 277
EA + VE+ + + +IW ++G H
Sbjct: 340 NEA---YDFVERMPMKPNSIIWRTLLGACVNHN 369
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 31/189 (16%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
S G+ID S V ++ + W +I G +++++F M ++GV PD++T+
Sbjct: 231 FSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTF 290
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ L H + K G+ D+F S R+V+ GM
Sbjct: 291 SGV-----------LVACSHGGLVKEGW--DIFES---------------IRKVY-GMDP 321
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPER-NVVSWSALIDGYVKCGDYKEALVIFEE 185
+ + M+D + G +N A E MP + N + W L+ V + A + +
Sbjct: 322 LLD-HYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAK 380
Query: 186 MRDVGSKAN 194
+ + S N
Sbjct: 381 ISKISSSQN 389
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 165/448 (36%), Positives = 248/448 (55%), Gaps = 42/448 (9%)
Query: 1 MLSFSAL----SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR 56
++S++AL + G I+ + K+ + + WN +I GY+ + N +++ LF +M++
Sbjct: 169 VVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMK 228
Query: 57 AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
V PD T + A + +L VH+ I G S+L I N+LI
Sbjct: 229 TNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALI----------- 277
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
D Y+KCGE+ A +F+ + ++V+SW+ +I GY Y
Sbjct: 278 --------------------DLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLY 317
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLTLPLQ 233
KEAL++F+EM G N+VT++S+L ACA LGA+D GR + Y IDK G++ L+
Sbjct: 318 KEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVY-IDKRIKGVTNASSLR 376
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
TSLIDMYAKCG I+ A VF+ + H + NAMI G AMHG + ++F+ M+ G
Sbjct: 377 TSLIDMYAKCGDIEAAHQVFNSM--HHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNG 434
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEA 352
I PD+ITF+GLLSAC+H G++ F+S+ + + PK EHY CM+D L G EA
Sbjct: 435 IEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEA 494
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412
E I M +EP + SLL C HG ++L E +KL++++P++ G YV LSN+YA
Sbjct: 495 EEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATA 554
Query: 413 KRWDEARTTREAMETRGVKKYPGWSFVE 440
RW+E R + +G+KK PG S +E
Sbjct: 555 GRWNEVANIRALLNDKGMKKVPGCSSIE 582
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/410 (33%), Positives = 225/410 (54%), Gaps = 9/410 (2%)
Query: 1 MLSFSALS-YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
+L F LS + Y+ V + P + WNT+ RG++ S +P +I L+V M+ G+
Sbjct: 40 LLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGL 99
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T+PFL K+ +L + +H + K GYE DL++ SLI MY G A +
Sbjct: 100 LPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHK 159
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFDG + VS+ +++ GYA G + A+++F+ +P ++VVSW+A+I GY G+ KEA
Sbjct: 160 VFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEA 219
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F+EM K +E T+V+V+ ACA G++ GR + ++ D GL L + +LID+
Sbjct: 220 LDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDL 279
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y+KCG ++ A +F G+ DV+ WN MIGG KE+L LF EM G P+++
Sbjct: 280 YSKCGEVETACGLFQGLS--NKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDV 337
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
T L +L ACA G + + + KR G+ S ++D ++ G + A++
Sbjct: 338 TMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 397
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRYVGL 405
M T S +++ G HG+ + A + ++ + ++PD D +VGL
Sbjct: 398 SMH-HRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPD-DITFVGL 445
>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/431 (36%), Positives = 247/431 (57%), Gaps = 2/431 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG++ + +VL + W T+I + + + +++ L+ +ML G P+ + +
Sbjct: 326 LGDLYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSV 385
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L +HA K G ++LF+S+SLI MY C YA+ VF+ +P K +
Sbjct: 386 LSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNT 445
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
V WNS++ GY+ G+M A +F MP RN VSW+ +I GY + + +AL F M
Sbjct: 446 VCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLAS 505
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G E+TL SVL ACA+L +L+ GRM+ ++ G+ + + T+L DMYAK G + +
Sbjct: 506 GHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSS 565
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF+ + + + + W AM+ GLA +GF +ES+ LF +M GI P+E TFL +L AC+
Sbjct: 566 RRVFYQMPEKNN--ITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACS 623
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
H GLV +A ++F+++ G+ PKS+HY CMVD L+RAG + EA E + ++ E S
Sbjct: 624 HCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWS 683
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL+ C + ++ E KKL EL+ D+ YV LSN+YA +W +A TR M+
Sbjct: 684 SLLSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGAS 743
Query: 430 VKKYPGWSFVE 440
+KK G S+++
Sbjct: 744 LKKDAGCSWLQ 754
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 113/395 (28%), Positives = 188/395 (47%), Gaps = 42/395 (10%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ ++ +I G+ +++ + +F KML V P+ +T + KA + +LA+ V
Sbjct: 211 VAFFTAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVG 270
Query: 88 QIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
K +E + + NSLI +Y GD A VFD M + VSW ++LD YA G++
Sbjct: 271 LAVKCNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLY 330
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
AR+V + MP RN VSW LI + + GD EAL ++ +M G + N SVL ACA
Sbjct: 331 GARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACA 390
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
L L G + + G S L + +SLIDMY KC A VF+ + + + + W
Sbjct: 391 TLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLP--EKNTVCW 448
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
N++I G + +G + E+ LF +M + +++ ++S A +A +F ++
Sbjct: 449 NSLISGYSWNGKMVEAEGLFNKMP----ARNSVSWNTMISGYAENRRFGDALNYFYAMLA 504
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
G +P G++T L S+L C N L++ +
Sbjct: 505 SGHIP---------------GEIT-----------------LSSVLLACANLCSLEMGRM 532
Query: 387 VGKKLVELQPDHDGRYVG--LSNVYAIFKRWDEAR 419
V ++V+L + D ++G LS++YA D +R
Sbjct: 533 VHAEIVKLGIE-DNIFMGTALSDMYAKSGDLDSSR 566
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/421 (24%), Positives = 176/421 (41%), Gaps = 83/421 (19%)
Query: 42 KNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFIS 101
K +++ + +++ RA +S T P A +SG L L +++HA ++G +D ++
Sbjct: 63 KTYSETCASLLRLCRA-MSATSTTMPSYAPSSGCLP---LVLSLHAHAFRSGLTADRSVA 118
Query: 102 NSLIHMYGS----------------------------------CGDIVYAREVFDGMPTK 127
++L+ Y + GDI AR +F GMP K
Sbjct: 119 SNLLTAYAAFTRAADRDQAFRDCVAADAASSFTYDFMVSEHVKAGDIASARRLFYGMPEK 178
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
VS+ +M+D K G + A +++E P +V ++A+I G+V+ +K+A +F +M
Sbjct: 179 SVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFPVFRKML 238
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL-SLTLPLQTSLIDMYAKCGAI 246
+ N VTL+ V+ AC G D ++ + L ++ + SLI +Y + G
Sbjct: 239 TCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDA 298
Query: 247 KEALIVFHGVEKHQSDVLIWNAM------IGGL----------------------AMH-- 276
A VF +E DV+ W A+ +G L A H
Sbjct: 299 AAAHRVFDDMEVR--DVVSWTALLDVYADLGDLYGARRVLDAMPARNEVSWGTLIARHEQ 356
Query: 277 -GFVKESLELFTEMQIVGITPDEITFLGLLSACA-----HGGLVMEAWYFFKSLGKRGMV 330
G E+L+L+++M G P+ F +LSACA GG + A V
Sbjct: 357 KGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFV 416
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKK 390
S ++D + Q T A +P E SL++G +GK+ AE + K
Sbjct: 417 SSS-----LIDMYCKCKQCTYAQRVFNSLP-EKNTVCWNSLISGYSWNGKMVEAEGLFNK 470
Query: 391 L 391
+
Sbjct: 471 M 471
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/431 (37%), Positives = 240/431 (55%), Gaps = 34/431 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
++ Y+ + +S P I +N++ RGYS+ NP + SLFV++L G+ PD+ T+P L
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA E +H K G + ++++ +LI+MY C D+
Sbjct: 137 KACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDV---------------- 180
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+ AR VF+ + E VV ++A+I GY + EAL +F EM+
Sbjct: 181 ---------------DSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKY 225
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K NE+TL+SVL +CA LG+LD G+ + +Y + + T+LIDM+AKCG++ +A+
Sbjct: 226 LKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAV 285
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F + D W+AMI A HG ++S+ +F M+ + PDEITFLGLL+AC+H
Sbjct: 286 SIFEKMR--YKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSH 343
Query: 311 GGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
G V E YF + + K G+VP +HY MVD LSRAG + +AYEFI ++P+ PT +
Sbjct: 344 TGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWR 403
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
LL C +H LDLAE V +++ EL H G YV LSN+YA K+W+ + R+ M+ R
Sbjct: 404 ILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRK 463
Query: 430 VKKYPGWSFVE 440
K PG S +E
Sbjct: 464 AVKVPGCSSIE 474
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/417 (37%), Positives = 242/417 (58%), Gaps = 7/417 (1%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
+NT+I G+++ + + +F +M V PD T+ L L + VH +
Sbjct: 187 FNTMINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVY 246
Query: 91 KT--GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV--SWNSMLDGYAKCGEMN 146
+ + ++ + N L+ MY CG +V A V + SV +W S++ YA GE+
Sbjct: 247 RELGCFGGNVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVK 306
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
+AR++F+ M ER+VVSW+A+I GY G ++EAL +F ++ +G K +EV +V+ L ACA
Sbjct: 307 VARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACA 366
Query: 207 HLGALDQGRMMLRYMIDKG--LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
LGAL+ GR + R + S+ ++++DMYAKCG+I AL VF +
Sbjct: 367 RLGALELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTF 426
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
++N++I GLA HG + + LF EM ++G+ PD ITF+ +LSAC H GLV F+S+
Sbjct: 427 LYNSIISGLAHHGRGEYAKNLFEEMGLLGLKPDNITFVAVLSACGHCGLVDFGKKLFESM 486
Query: 325 GK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
G+ P+ EHY CMVD L RAG + EA+ I +MP + A + +LL+ C HG + L
Sbjct: 487 FTVYGVSPEMEHYGCMVDLLGRAGHLDEAHRLILKMPFKANAVIWRALLSACKVHGDVAL 546
Query: 384 AEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
A + +LVELQ DH YV LSN+ + + DEA + R+A++ G++K PGWS+VE
Sbjct: 547 ARVASYELVELQHDHGAGYVMLSNMLSDTDQHDEAASLRKAIDNVGIQKPPGWSYVE 603
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 210/402 (52%), Gaps = 34/402 (8%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNK-SISLFVKMLRAGVSPDHLTYPFLAKASGR-- 75
+ + ++NP IF WN +I+ YS+ +P + SLF ML + V PD T+PFL KA
Sbjct: 71 LFTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVL 130
Query: 76 LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSM 135
++ + VH + + G+ SD+F++N+L++ Y GD+V A +VFD + VS+N+M
Sbjct: 131 ISAPQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTM 190
Query: 136 LDGYAKCGEMNMARQVFELMP----ERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDVG 190
++G+A+ G+++ +VF M + ++ AL+ G DY+ + + R++G
Sbjct: 191 INGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELG 250
Query: 191 SKANEVTLVSVLCAC-AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
V LV+ L A G L +L ++ G S+ + TSL+ YA G +K A
Sbjct: 251 CFGGNVLLVNKLVDMYAKCGRLVMAETVLS-VVKPGKSV-VAAWTSLVSAYALRGEVKVA 308
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+F + + DV+ W AMI G + G +E+LELF +++ +G+ PDE+ + LSACA
Sbjct: 309 RRLFD--QMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACA 366
Query: 310 HGGLVMEAWYFFKSLGKR-GMVPKSEHYAC---------MVDALSRAGQVTEAYEFICQM 359
G + LG+R E++ C +VD ++ G + A + +
Sbjct: 367 RLGAL--------ELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSIDIALDVFRKT 418
Query: 360 PLEPTASML-GSLLTGCMNHGKLDLAEIVGKK--LVELQPDH 398
+ + L S+++G +HG+ + A+ + ++ L+ L+PD+
Sbjct: 419 SDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMGLLGLKPDN 460
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 43/184 (23%)
Query: 11 GNIDYSCKVLSHLSNPR--IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPF 68
G+ID + V S+ + F +N++I G + + +LF +M G+ PD++T+
Sbjct: 406 GSIDIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMGLLGLKPDNITFVA 465
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+ A G CG + + +++F+ M T
Sbjct: 466 VLSACGH-----------------------------------CGLVDFGKKLFESMFTVY 490
Query: 129 SVS-----WNSMLDGYAKCGEMNMARQVFELMP-ERNVVSWSALIDGYVKCGDYKEALVI 182
VS + M+D + G ++ A ++ MP + N V W AL+ GD A V
Sbjct: 491 GVSPEMEHYGCMVDLLGRAGHLDEAHRLILKMPFKANAVIWRALLSACKVHGDVALARVA 550
Query: 183 FEEM 186
E+
Sbjct: 551 SYEL 554
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 166/444 (37%), Positives = 251/444 (56%), Gaps = 38/444 (8%)
Query: 2 LSFSAL----SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA 57
+SF+AL + G +D + ++ + + WN +I GY++ +++ LF M +A
Sbjct: 196 ISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKA 255
Query: 58 GVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYA 117
V P+ T + A + +L ++ + I G S+L + N+LI MY
Sbjct: 256 NVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMY--------- 306
Query: 118 REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
+KCG++ AR++F+ M ER+V+SW+ +I GY YK
Sbjct: 307 ----------------------SKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYK 344
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
EAL +F EM G + E+T +S+L +CAHLGA+D G+ + Y+ S++ L TSLI
Sbjct: 345 EALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLI 404
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
D+YAKCG I A VF G++ + WNAMI GLAMHG ++ ELF++M GI P+
Sbjct: 405 DLYAKCGNIVAARQVFDGMKI--KSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPN 462
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFI 356
EITF+G+LSAC H GLV FF S+ + + PKS+HY CM+D L RAG EA +
Sbjct: 463 EITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLL 522
Query: 357 CQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWD 416
M ++P ++ GSLL C +HG+++L E+V ++L EL+PD+ G YV LSN+YA +WD
Sbjct: 523 QNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWD 582
Query: 417 EARTTREAMETRGVKKYPGWSFVE 440
+ R + RG+KK PG + +E
Sbjct: 583 DVARIRTRLNDRGMKKVPGCTTIE 606
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 165/467 (35%), Positives = 252/467 (53%), Gaps = 44/467 (9%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ FSA+S G+I Y+ + + + P +F WN++IRG S S +P ++ FV+M+ +GV
Sbjct: 67 LIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVE 126
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ T+PFL K+ +LA +HA + K G+ SD+FI SLI+MY G++ A+ V
Sbjct: 127 PNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLV 186
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD + ++S+ +++ GYA G M+ ARQ+F+ MP ++VVSW+A+I GY + G KEAL
Sbjct: 187 FDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEAL 246
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
++FE+MR NE T+VSVL ACA ALD G M ++ D+GL L L +LIDMY
Sbjct: 247 LLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMY 306
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
+KCG ++ A +F + + DV+ WN MIGG KE+L LF EM G+ P EIT
Sbjct: 307 SKCGDLQTARELFD--DMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEIT 364
Query: 301 FLGLLSACAH-GGLVMEAW---YFFKSLGKR--------------------------GMV 330
FL +L +CAH G + + W Y K+ GM
Sbjct: 365 FLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMK 424
Query: 331 PKS-EHYACMVDALSRAGQVTEAYEFICQMP---LEPTASMLGSLLTGCMNHGKLDLAEI 386
KS + M+ L+ GQ +A+E +M +EP +L+ C + G +DL +
Sbjct: 425 IKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQ 484
Query: 387 VGKKLVE---LQP--DHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+V+ + P H G + L +F +EA + + ME +
Sbjct: 485 FFSSMVQDYKISPKSQHYGCMIDLLGRAGLF---EEAESLLQNMEVK 528
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 126/311 (40%), Gaps = 72/311 (23%)
Query: 85 VHAQIAKTGYESDLFISNSLIHM--YGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+HA I KTG + LF + LI GDI YA +F+ + WNSM+ G +
Sbjct: 48 IHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLS-- 105
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
L P AL ALV F M G + N T +L
Sbjct: 106 ---------MSLSP--------AL------------ALVFFVRMIYSGVEPNSYTFPFLL 136
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV------ 256
+CA L + +G+ + +++ G + + TSLI+MYA+ G + A +VF
Sbjct: 137 KSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAI 196
Query: 257 -----------------------EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
E DV+ WNAMI G A G KE+L LF +M+
Sbjct: 197 SFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKAN 256
Query: 294 ITPDEITFLGLLSACAHG-----GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQ 348
+ P+E T + +LSACA G M +W + RG+ + ++D S+ G
Sbjct: 257 VPPNESTIVSVLSACAQSNALDLGNSMRSW-----IEDRGLCSNLKLVNALIDMYSKCGD 311
Query: 349 VTEAYEFICQM 359
+ A E M
Sbjct: 312 LQTARELFDDM 322
>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 548
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 150/452 (33%), Positives = 245/452 (54%), Gaps = 37/452 (8%)
Query: 24 SNPRIFYWNTVIRGYSKSKNPN---KSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE 80
++ ++ W + Y+K +P ++ LF+ MLR+G P+ T + K+ +L
Sbjct: 66 ASANVYLWTATVSSYAKHASPALAAEAFPLFMFMLRSGPRPNGFTVSSVLKSLSKLRAAH 125
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGS------------------------------ 110
VH + K G S L + +L+ YG+
Sbjct: 126 QVCQVHGFLVKAGLASSLHVGATLLDSYGNLCRVKDARRVFDEMPRSNVVVGNAMVSGYV 185
Query: 111 -CGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDG 169
GD+ AR+VFDGM + S+SWN+++ GY + G+ +AR +F+ MP+RNV SW+ +I
Sbjct: 186 KAGDVEAARQVFDGMVERDSISWNTLMSGYLRRGDAGLARDLFDEMPQRNVNSWNMMISA 245
Query: 170 YVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229
+ G + +++ +F +MR + + + T+ ++ ACA LG L R + + + +
Sbjct: 246 CSEVGLWADSVAVFNQMRFMSFRPDAATMAVLMSACAQLGFLSVARQVYGLLRKGCVEMN 305
Query: 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
+ SL+DM+AKCG EA ++F E DV+ +N M+ LA HG K++L+LF +M
Sbjct: 306 CHVHNSLVDMFAKCGCFSEAHLLF--AEMDPKDVVSYNVMVSALAHHGHGKDALKLFEQM 363
Query: 290 QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS-EHYACMVDALSRAGQ 348
G+ PD +TFLG+LSACAH GLV Y+F+++G + KS +HYACMVD R G
Sbjct: 364 IEGGLQPDAVTFLGVLSACAHAGLVDSGKYYFETMGTTYAIEKSADHYACMVDLYGRVGL 423
Query: 349 VTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNV 408
+ EA+ F+ MP++P A + G+LL C H +D+ E+ ++L+ ++P + G YV LSN
Sbjct: 424 IEEAHYFVKIMPVKPHAGIWGALLNACRKHCNIDVGEVAARELIRIEPMNPGNYVLLSNT 483
Query: 409 YAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
A ++WD R+ M G+ K G+S+VE
Sbjct: 484 LAWSQQWDAVGDVRQLMRGNGIDKNTGFSWVE 515
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 130/278 (46%), Gaps = 24/278 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+++ + +V + WNT++ GY + + + LF +M + V+ ++ +
Sbjct: 188 GDVEAARQVFDGMVERDSISWNTLMSGYLRRGDAGLARDLFDEMPQRNVN----SWNMMI 243
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + +VAV Q+ + D L+ G + AR+V+ G+ K V
Sbjct: 244 SACSEVGLWADSVAVFNQMRFMSFRPDAATMAVLMSACAQLGFLSVARQVY-GLLRKGCV 302
Query: 131 SW-----NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
NS++D +AKCG + A +F M ++VVS++ ++ G K+AL +FE+
Sbjct: 303 EMNCHVHNSLVDMFAKCGCFSEAHLLFAEMDPKDVVSYNVMVSALAHHGHGKDALKLFEQ 362
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGR-----MMLRYMIDKGLSLTLPLQTSLIDMY 240
M + G + + VT + VL ACAH G +D G+ M Y I+K + ++D+Y
Sbjct: 363 MIEGGLQPDAVTFLGVLSACAHAGLVDSGKYYFETMGTTYAIEK----SADHYACMVDLY 418
Query: 241 AKCGAIKEA--LIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ G I+EA + V+ H IW A++ H
Sbjct: 419 GRVGLIEEAHYFVKIMPVKPHAG---IWGALLNACRKH 453
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 151/430 (35%), Positives = 252/430 (58%), Gaps = 10/430 (2%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y + S + +P F ++ +IR Y+++ + SI L+ ML VSP T+ L
Sbjct: 64 YPHLLFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSL-- 121
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
L L +H G+ +DL++ N++IHMY G + AR+VFD MP + V+W
Sbjct: 122 -LKNPSLGSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTE 180
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ YA+ G+M+ A ++F +P +++V+W++++ GY + K+AL F +MR+ G +
Sbjct: 181 LIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTD 240
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKCGAIKEALI 251
E+TLV + ACA LG +R + + G + + ++LIDMY+KCG ++EA
Sbjct: 241 EITLVGAISACAQLGVSGYADW-IREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYN 299
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF G++ + +V +++MI G A+HG + +++LF EM GI P+ +TF+GL +AC+H
Sbjct: 300 VFKGMK--EMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHA 357
Query: 312 GLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
G+V + F ++ + G+ P ++HYACM D L RAG + +A + + MP+EP + G+
Sbjct: 358 GMVEQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGA 417
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL HG D+AEI + L EL+PD+ G Y+ LS YA+ +WD+ R+ M + +
Sbjct: 418 LLGASHIHGNPDVAEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQL 477
Query: 431 KKYPGWSFVE 440
+K PG S+VE
Sbjct: 478 RKNPGCSWVE 487
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 136/299 (45%), Gaps = 37/299 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D +C++ L + W +++ GYS++ P K++ F KM AGV D +T
Sbjct: 189 GDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAI 248
Query: 71 KASGRLAKRELAVAVH--AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A +L A + A+ ++ G S++F+ ++LI MY CG++ A VF GM
Sbjct: 249 SACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMN 308
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
S++SM+ G+A G + A+ +F EM +
Sbjct: 309 VFSYSSMIVGFAVHGRA-------------------------------RSAIKLFYEMLE 337
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIK 247
G K N VT V + AC+H G ++QG+ + M + G+S T + D+ + G ++
Sbjct: 338 NGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHLE 397
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+AL + + + + +W A++G +HG + + + PD + LLS
Sbjct: 398 KALQLVQTMPM-EPNGGVWGALLGASHIHG--NPDVAEIASRSLFELEPDNLGNYLLLS 453
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 158/434 (36%), Positives = 245/434 (56%), Gaps = 35/434 (8%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S GN++ + +V + + I W + I Y + + +I LF +M GV PD T
Sbjct: 617 SKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVT 676
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A + + VH+ + K G S+L ++N+LI+M
Sbjct: 677 SIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINM-------------------- 716
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
YAKCG + AR VF +P +++VSW+ +I GY + EAL +F +M+
Sbjct: 717 -----------YAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQ 765
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
K +++T+ VL ACA L ALD+GR + +++ +G L + +L+DMYAKCG +
Sbjct: 766 K-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLV 824
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A ++F + K D++ W MI G MHGF E++ F EM+I GI PDE +F +L+A
Sbjct: 825 LAQLLFDMIPK--KDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNA 882
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H GL+ E W FF S+ G+ PK EHYAC+VD L+R G +++AY+FI MP++P +
Sbjct: 883 CSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTT 942
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ G LL+GC H + LAE V + + EL+PD+ YV L+NVYA ++W+E + R+ M+
Sbjct: 943 IWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQ 1002
Query: 427 TRGVKKYPGWSFVE 440
RG K+ PG S++E
Sbjct: 1003 KRGFKQNPGCSWIE 1016
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/401 (28%), Positives = 184/401 (45%), Gaps = 75/401 (18%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
K+ + N ++F WN ++ Y+K N +S+SLF KM + GV + T+ + K L
Sbjct: 425 KIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALG 484
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
K + VH + K G+ S+ + NSLI Y G + A +FD + VSWNSM++
Sbjct: 485 KVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMIN 544
Query: 138 G-----------------------------------YAKCGEMNMARQV----FELMPER 158
G +A G +++ R + +
Sbjct: 545 GCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSE 604
Query: 159 NVVSWSALIDGYVKCGD-------------------------------YKEALVIFEEMR 187
VV + L+D Y KCG+ Y +A+ +F+EM+
Sbjct: 605 EVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQ 664
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G + + T+ S++ ACA +LD+GR + Y+I G+ LP+ +LI+MYAKCG+++
Sbjct: 665 SKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVE 724
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
EA +VF + D++ WN MIGG + + E+LELF +MQ PD+IT +L A
Sbjct: 725 EARLVFSKIP--VKDIVSWNTMIGGYSQNSLPNEALELFLDMQ-KQFKPDDITMACVLPA 781
Query: 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEHYAC-MVDALSRAG 347
CA + + + +RG H AC +VD ++ G
Sbjct: 782 CAGLAALDKGREIHGHILRRGYF-SDLHVACALVDMYAKCG 821
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 89/386 (23%), Positives = 153/386 (39%), Gaps = 78/386 (20%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VH+ I G D + L+ MY +CGD+V R++FD + WN ++ YAK G
Sbjct: 391 VHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGN 450
Query: 145 MNMARQVFELMPERNVVS---------------------------------------WSA 165
+ +F+ M + VV ++
Sbjct: 451 FRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNS 510
Query: 166 LIDGYVKCGDYKEALVIFEEMRD-------------------------------VGSKAN 194
LI Y K G + A +F+E+ + +G + +
Sbjct: 511 LIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVD 570
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
TLVSVL A A++G L GR + + + S + +L+DMY+KCG + A VF
Sbjct: 571 LTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVF- 629
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
V+ + ++ W + I G +++ LF EMQ G+ PD T ++ ACA +
Sbjct: 630 -VKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSL 688
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS---MLGSL 371
+ + K GM +++ ++ G V EA ++P++ S M+G
Sbjct: 689 DKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGY 748
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPD 397
+ + L+L + K + +PD
Sbjct: 749 SQNSLPNEALELFLDMQK---QFKPD 771
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 102/219 (46%), Gaps = 11/219 (5%)
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL---VSVLCACAHLGALDQGRMMLRY 220
+A I+ + + GD + A+ + + SK+ E+ L SVL CA +L+ G+ +
Sbjct: 340 NAKINKFCEMGDLRNAIELLTK-----SKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSV 394
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+I G+S+ L L+ MY CG + + +F + + V +WN ++ A G +
Sbjct: 395 IISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK--VFLWNLLMSEYAKIGNFR 452
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMV 340
ES+ LF +MQ +G+ + TF +L A G V E + K G + ++
Sbjct: 453 ESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLI 512
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
A + G V A+ ++ EP S++ GC+ +G
Sbjct: 513 AAYFKFGGVESAHNLFDELS-EPDVVSWNSMINGCVVNG 550
>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 177/536 (33%), Positives = 261/536 (48%), Gaps = 101/536 (18%)
Query: 4 FSALSYLGNI-DYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD 62
SA +Y + Y VL H +P F W IR ++ ++ +L+V+M R G+ P
Sbjct: 45 LSASNYSATVAQYVHSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLWPT 104
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGY---------------------------- 94
KA R+A R +++H Q+ K G+
Sbjct: 105 TFALSSALKACARIAYRMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARK 164
Query: 95 ------ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
E ++ NS++ Y GD+V A+ VFD +P K +SWNSM+ GYA+ G+M A
Sbjct: 165 MFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKA 224
Query: 149 RQVFELMPERNVVSWSALIDGYV-------------------------------KCGDY- 176
+F+ MPERN SW+A+I GYV KCGD
Sbjct: 225 LSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVD 284
Query: 177 ------------------------------KEALVIFEEM--RDVGSKANEVTLVSVLCA 204
KEAL +F M DV + +E+TL SV+ A
Sbjct: 285 SACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISA 344
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
C+ LG L G + YM G+ + L T+L+D+YAKCG+I +A +FHG+ K D++
Sbjct: 345 CSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRK--KDLV 402
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
+ AMI G ++G ++++LF EM I P+ ITF+GLL+A H GLV E ++ F S+
Sbjct: 403 AYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYHCFTSM 462
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
K +VP +HY MVD RAG++ EA E I MP++P A + G+LL C H ++
Sbjct: 463 KKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFG 522
Query: 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
EI + EL+PD G LSN+YA +RWD+ + R+ + +G K PG S++E
Sbjct: 523 EIAAQHCFELEPDTTGYCSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCSWME 578
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 153/436 (35%), Positives = 254/436 (58%), Gaps = 8/436 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPF 68
LG ++ + KV + + WN +I Y + +I++F +M R + + D T
Sbjct: 162 LGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVS 221
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A L +E+ +H + E I N+L+ MY CG + AR +FD M K
Sbjct: 222 TLSACSVLRNQEVGEEIHRYV-DAELEMTTKIGNALLDMYCKCGCVDKARAIFDEMGNKN 280
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
+ W SM+ GYA G ++ AR++FE P R++V W+A+I+GYV+ + EAL +F +M+
Sbjct: 281 VICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQI 340
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
+ + LV++L CA GAL+QG+ + Y+ + ++L + T+L+D+YAKCG +++
Sbjct: 341 QRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGCVEK 400
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
AL VF+ E + D W ++I GLA++G ++L+ F++M+ G PD+ITF+G+L+AC
Sbjct: 401 ALEVFY--EMKERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDITFIGVLTAC 458
Query: 309 AHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT--- 364
HGGLV E +F S+ K + PKSEHY+C++D L RAG + EA + +P+E +
Sbjct: 459 NHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLIDLLCRAGLLDEAELLLEMIPIESSDIV 518
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
+ SLL+ C N+G L ++E VG++L ++ + L++VYA RW++ T R
Sbjct: 519 VPLYCSLLSACRNYGNLKMSERVGRRLERVEVKDSSVHTLLASVYASANRWEDVTTVRRK 578
Query: 425 METRGVKKYPGWSFVE 440
M+ G++K+PG S +E
Sbjct: 579 MKELGIRKFPGCSSIE 594
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 176/386 (45%), Gaps = 64/386 (16%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I Y+ +VL + +P + +N +I+ +K +N K + LF ++ + G++PD+ T P +
Sbjct: 64 GSIRYAERVLGFVQSPCLVMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVF 123
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA G L K VH + K+G+ D + NS++ MYG+ G + A++VFD +P + V
Sbjct: 124 KAMGCLGKVVEGEKVHGYVVKSGF--DACVCNSVMGMYGALGKMEVAKKVFDEIPERDVV 181
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDV 189
SWN LI YV +++A+ +F M R+
Sbjct: 182 SWN-------------------------------VLISSYVGHRKFEDAIAVFRRMRRES 210
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
KA+E T+VS L AC+ L + G + RY +D L +T + +L+DMY KCG + +A
Sbjct: 211 NLKADEATVVSTLSACSVLRNQEVGEEIHRY-VDAELEMTTKIGNALLDMYCKCGCVDKA 269
Query: 250 LIVFHGVEKHQ-----------------------------SDVLIWNAMIGGLAMHGFVK 280
+F + D+++W AMI G
Sbjct: 270 RAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFD 329
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMV 340
E+L+LF +MQI + PD + LL CA G + + + + + + +V
Sbjct: 330 EALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALV 389
Query: 341 DALSRAGQVTEAYEFICQMPLEPTAS 366
D ++ G V +A E +M TAS
Sbjct: 390 DVYAKCGCVEKALEVFYEMKERDTAS 415
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 158/430 (36%), Positives = 225/430 (52%), Gaps = 34/430 (7%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
N+ Y+ +V LS I W +I Y N N+ + LFVKML G+ P+ +T L K
Sbjct: 277 NLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVK 336
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
G EL +HA + G+ L ++ + I MYG
Sbjct: 337 ECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYG---------------------- 374
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
KCG++ AR VF+ ++++ WSA+I Y + EA IF M G
Sbjct: 375 ---------KCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGI 425
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ NE T+VS+L CA G+L+ G+ + Y+ +G+ + L+TS +DMYA CG I A
Sbjct: 426 RPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHR 485
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
+F E D+ +WNAMI G AMHG + +LELF EM+ +G+TP++ITF+G L AC+H
Sbjct: 486 LF--AEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHS 543
Query: 312 GLVMEAWYFF-KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GL+ E F K + + G PK EHY CMVD L RAG + EA+E I MP+ P ++ GS
Sbjct: 544 GLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGS 603
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
L C H + L E K+ + L+P G V +SN+YA RW + R AM+ G+
Sbjct: 604 FLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGI 663
Query: 431 KKYPGWSFVE 440
K PG S +E
Sbjct: 664 VKEPGVSSIE 673
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 180/376 (47%), Gaps = 40/376 (10%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S +G++ + + + N + W+T+IR Y +S ++++ L M V P +
Sbjct: 170 SEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMI 229
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ LA +L A+HA + + G CG G+P
Sbjct: 230 SITHVLAELADLKLGKAMHAYVMRNG----------------KCGK--------SGVPL- 264
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+++D Y KC + AR+VF+ + + +++SW+A+I Y+ C + E + +F +M
Sbjct: 265 ----CTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKML 320
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G NE+T++S++ C GAL+ G+++ + + G +L+L L T+ IDMY KCG ++
Sbjct: 321 GEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVR 380
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VF + D+++W+AMI A + + E+ ++F M GI P+E T + LL
Sbjct: 381 SARSVFDSFK--SKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMI 438
Query: 308 CAHGG-LVMEAW---YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
CA G L M W Y K K M+ K+ VD + G + A+ + +
Sbjct: 439 CAKAGSLEMGKWIHSYIDKQGIKGDMILKTS----FVDMYANCGDIDTAHRLFAE-ATDR 493
Query: 364 TASMLGSLLTGCMNHG 379
SM ++++G HG
Sbjct: 494 DISMWNAMISGFAMHG 509
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 128/297 (43%), Gaps = 35/297 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + V + + W+ +I Y+++ +++ +FV M G+ P+ T L
Sbjct: 377 GDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLL 436
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ E+ +H+ I K G + D+ + S + MY +CGDI A +F +
Sbjct: 437 MICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDIS 496
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
WN+M+ G+A G + AL +FEEM +G
Sbjct: 497 MWNAMISGFAMHGHG-------------------------------EAALELFEEMEALG 525
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
N++T + L AC+H G L +G+ + M+ + G + + ++D+ + G + EA
Sbjct: 526 VTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEA 585
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ + + ++ ++ + + +H +K L + Q + + P + + L+S
Sbjct: 586 HELIKSMPM-RPNIAVFGSFLAACKLHKNIK--LGEWAAKQFLSLEPHKSGYNVLMS 639
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 15/190 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+ID + ++ + ++ I WN +I G++ + ++ LF +M GV+P+ +T+
Sbjct: 478 GDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGAL 537
Query: 71 KA---SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
A SG L +E H + + G+ + ++ + G G + A E+ MP +
Sbjct: 538 HACSHSGLL--QEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMR 595
Query: 128 MSVS-WNSMLDGYA-----KCGEMNMARQVFELMPERNVVSWSALIDG-YVKCGDYKEAL 180
+++ + S L K GE A+Q L P ++ ++ L+ Y + +
Sbjct: 596 PNIAVFGSFLAACKLHKNIKLGEW-AAKQFLSLEPHKS--GYNVLMSNIYASANRWGDVA 652
Query: 181 VIFEEMRDVG 190
I M+D G
Sbjct: 653 YIRRAMKDEG 662
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 153/357 (42%), Positives = 214/357 (59%), Gaps = 34/357 (9%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VH+ + G+ES +F+ N+L+HMY A CG
Sbjct: 17 VHSIAIRNGFESLVFVQNTLVHMY-------------------------------AACGH 45
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
A ++FELM ERN+V+W+++I+GY G EAL +F EM G + + T+VS+L A
Sbjct: 46 AESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSA 105
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
CA LGAL GR YM+ GL L +L+D+YAKCG+I++A VF +E + V+
Sbjct: 106 CAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEME--EKSVV 163
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
W ++I GLA++GF KE+LELF E++ G+ P EITF+G+L AC+H G+V E + +FK +
Sbjct: 164 SWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRM 223
Query: 325 GKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+ G+VPK EHY CMVD L RAG V +A+EFI MP++P A + +LL C HG L L
Sbjct: 224 KEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLAL 283
Query: 384 AEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
E+ +L++L+P H G YV LSN+YA +RW + R M GVKK PG S VE
Sbjct: 284 GEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVE 340
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 135/287 (47%), Gaps = 35/287 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+ + + K+ ++ + WN+VI GY+ + PN++++LF +M GV PD T L
Sbjct: 44 GHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLL 103
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L L H + K G + +L N+L+ +Y CG I A +VFD M K V
Sbjct: 104 SACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVV 163
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW S++ G A ++G+ KEAL +F+E+ G
Sbjct: 164 SWTSLIVGLA--------------------------VNGF-----GKEALELFKELERKG 192
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
+E+T V VL AC+H G +D+G + M ++ G+ + ++D+ + G +K+A
Sbjct: 193 LMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQA 252
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
+ Q + ++W ++G +HG + +L Q++ + P
Sbjct: 253 HEFIQNM-PMQPNAVVWRTLLGACTIHGHL--ALGEVARAQLLQLEP 296
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
A A L + +G + I G + +Q +L+ MYA CG + A +F + + ++
Sbjct: 4 AIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMA--ERNL 61
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
+ WN++I G A++G E+L LF EM + G+ PD T + LLSACA G +
Sbjct: 62 VTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 121
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
+ K G+ ++D ++ G + +A++ +M
Sbjct: 122 MVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEM 157
>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 152/412 (36%), Positives = 227/412 (55%), Gaps = 35/412 (8%)
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMY------------ 108
PDHL+ F + R +A +H+ + G+ D+++ ++ + Y
Sbjct: 70 PDHLSLSFSLHSCTRSPSLPVASLLHSFAVRLGHARDVYVLSAAVSAYFRATDVASAERL 129
Query: 109 --------------------GSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
+ GD+ AR FD MP + VSWN+ML YA G ++ A
Sbjct: 130 FSYTKDVADVVTWTTMVTGHANTGDLERARWFFDAMPERNVVSWNAMLGAYASAGMLSKA 189
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
R++F++MP RN SWS+++ G V+ +EAL +F EM +G NE LVS + AC+ L
Sbjct: 190 RKLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNESALVSAVSACSLL 249
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
+L+ G + Y + ++L L T+++DMY KCG I A+ VF + ++ WN+
Sbjct: 250 RSLEHGVWVHAYAKRELQGMSLVLATAIVDMYGKCGGIHNAVRVFAAMP--VKNIYSWNS 307
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA-WYFFKSLGKR 327
MI GLAM+G ++L LF +MQ+ G+ P++ITF+GLL AC+H GLV E W F +
Sbjct: 308 MITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLLGACSHSGLVDEGRWLFNMMVNGF 367
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
G+ P EHY MVD L RAG V EA +F+ MP+EP + G+L C HG+++L E +
Sbjct: 368 GIQPVQEHYGLMVDLLGRAGHVREAVDFVNSMPVEPHPGLWGALAGACKIHGEVELGEEI 427
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
KKL+EL+P H RY+ LSN+Y RWD+ T R ++ R V K G + V
Sbjct: 428 AKKLIELEPRHGSRYILLSNIYGASNRWDDMATVRRLLKDRKVPKGTGNAMV 479
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 122/264 (46%), Gaps = 41/264 (15%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W++++ G +S +++ +F +M+ GV P+ A L E V VHA
Sbjct: 204 WSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNESALVSAVSACSLLRSLEHGVWVHAYAK 263
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ L ++ +++ MYG CG I A VF MP K SWNSM+ G A MN
Sbjct: 264 RELQGMSLVLATAIVDMYGKCGGIHNAVRVFAAMPVKNIYSWNSMITGLA----MN---- 315
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
G +AL +F +M+ G + N++T + +L AC+H G
Sbjct: 316 -----------------------GREMQALSLFWKMQMAGVRPNDITFIGLLGACSHSGL 352
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTS---LIDMYAKCGAIKEALIVFHG--VEKHQSDVLI 265
+D+GR + M++ G + P+Q ++D+ + G ++EA+ + VE H +
Sbjct: 353 VDEGRWLFNMMVN-GFGIQ-PVQEHYGLMVDLLGRAGHVREAVDFVNSMPVEPHPG---L 407
Query: 266 WNAMIGGLAMHGFVKESLELFTEM 289
W A+ G +HG V+ E+ ++
Sbjct: 408 WGALAGACKIHGEVELGEEIAKKL 431
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
G I + +V + + I+ WN++I G + + +++SLF KM AGV P+ +T+
Sbjct: 285 GGIHNAVRVFAAMPVKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDITF 340
>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 163/486 (33%), Positives = 251/486 (51%), Gaps = 90/486 (18%)
Query: 34 VIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTG 93
++R YS ++ K + ++ +M GV PD YP L K++G + HA + K G
Sbjct: 1 MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFHAHVLKLG 55
Query: 94 YESDLFISNSLIHMYG-------------------------------------------- 109
+ SD F+ N++I MY
Sbjct: 56 HGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGY 115
Query: 110 -SCGDIVYAREVFDGMPTKMSVSWNSMLDGYA---------------------------- 140
D+ AR FD MP + VSWN+ML GYA
Sbjct: 116 AKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAM 175
Query: 141 -----KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS-KAN 194
+ G+++ AR++F MP RNVV+W+++I GY + G A+ +F+EM +
Sbjct: 176 ISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPD 235
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
EVT+VSV+ AC HLGAL+ G ++R++ + + L++ ++I MY++CG++++A VF
Sbjct: 236 EVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQ 295
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
E DV+ +N +I G A HG E++ L + M+ GI PD +TF+G+L+AC+H GL+
Sbjct: 296 --EMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLL 353
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
E F+S+ P +HYACMVD L R G++ +A + +MP+EP A + GSLL
Sbjct: 354 EEGRKVFESIKD----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNA 409
Query: 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
H +++L E+ KL EL+PD+ G ++ LSN+YA RW + REAM+ GVKK
Sbjct: 410 SRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTT 469
Query: 435 GWSFVE 440
GWS+VE
Sbjct: 470 GWSWVE 475
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 114/247 (46%), Gaps = 36/247 (14%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPD 62
SA +G++D + K+ + + + WN++I GY+++ +I LF +M+ A ++PD
Sbjct: 176 ISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPD 235
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
+T + A G L EL V + + + + N++I MY CG + A+ VF
Sbjct: 236 EVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQ 295
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
M T+ VS+N+++ G+A G EA+ +
Sbjct: 296 EMATRDVVSYNTLISGFAAHGHG-------------------------------VEAINL 324
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
M++ G + + VT + VL AC+H G L++GR + + D + ++D+ +
Sbjct: 325 MSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAID----HYACMVDLLGR 380
Query: 243 CGAIKEA 249
G +++A
Sbjct: 381 VGELEDA 387
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 161/443 (36%), Positives = 254/443 (57%), Gaps = 36/443 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ ++ ++N ++F WN ++ GY+K N +S+SLF +M G+
Sbjct: 150 GDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIR---------R 200
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM------ 124
S R EL + D+ NS+I Y S G ++F+ M
Sbjct: 201 VESARKLFDELG------------DRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGIN 248
Query: 125 ---PTKMSVSW---NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
T +SV N +LD Y+K G +N A QVFE M ER+VVSW+++I GY + G
Sbjct: 249 TDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDM 308
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
++ +F EM N +T+ +L ACA L AL++G+ + +++ G SL + +L+D
Sbjct: 309 SVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVD 368
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MY KCGA+ A ++F + + D++ W MI G MHG+ E++ F EM+ GI PDE
Sbjct: 369 MYLKCGALGLARLLFDMIP--EKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDE 426
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFIC 357
++F+ +L AC+H GL+ E W FF + + PKSEHYAC+VD L+RAG +++AY+FI
Sbjct: 427 VSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIK 486
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
MP+EP A++ G+LL GC + + LAE V + + EL+P++ G YV L+N+YA ++W+E
Sbjct: 487 MMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEE 546
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
+ RE + RG++K PG S++E
Sbjct: 547 VKKLRERIGRRGLRKNPGCSWIE 569
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 115/243 (47%), Gaps = 47/243 (19%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG- 143
+H+ I E D + + L+ MY +CGD+ R +FD + + WN +++GYAK G
Sbjct: 123 IHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGN 182
Query: 144 -----------------EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ AR++F+ + +R+V+SW+++I GYV G ++ L +FE+M
Sbjct: 183 FRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQM 242
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+G + T+VSV L L L+DMY+K G +
Sbjct: 243 LLLGINTDLATMVSV---------------------------ELTLNNCLLDMYSKSGNL 275
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
A+ VF + + V+ W +MI G A G S+ LF EM+ + P+ IT +L
Sbjct: 276 NSAIQVFETM--GERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILP 333
Query: 307 ACA 309
ACA
Sbjct: 334 ACA 336
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
T SVL CA L ++ GR + + + + L + L+ MY CG ++E +F V
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
+ V +WN ++ G A G +ESL LF M+ +GI
Sbjct: 163 ANEK--VFLWNLLMNGYAKIGNFRESLSLFKRMRELGI 198
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 149/431 (34%), Positives = 240/431 (55%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+Y+ V +S+ + WNT+I Y + +++ LF +M + V PD + +
Sbjct: 160 GRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIV 219
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A GR A++ + + D + +L+ MY G + ARE F M +
Sbjct: 220 SACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLF 279
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+M+ GY+KCG ++ A+ +F+ ++++V W+ +I YV+ +EAL +FEEM G
Sbjct: 280 VSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSG 339
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K + V++ SV+ ACA+LG LD+ + + + GL L + +LI+MYAKCG +
Sbjct: 340 IKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATR 399
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + + +V+ W++MI L+MHG ++L LF M+ + P+E+TF+G+L C+H
Sbjct: 400 DVFEKMPRR--NVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSH 457
Query: 311 GGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E F S+ + PK EHY CMVD RA + EA E I MP+ + G
Sbjct: 458 SGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWG 517
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SL++ C HG+L+L + K+++EL+PDHDG V +SN+YA +RW++ R R ME +
Sbjct: 518 SLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKN 577
Query: 430 VKKYPGWSFVE 440
V K G S ++
Sbjct: 578 VFKEKGLSRID 588
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/483 (22%), Positives = 193/483 (39%), Gaps = 111/483 (22%)
Query: 15 YSCKVLSHL-SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS 73
Y+ V S + S P +N +R S+S P +I + ++ G D ++ + KA
Sbjct: 62 YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAV 121
Query: 74 GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
+++ + +H K D F+ + MY S
Sbjct: 122 SKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYAS----------------------- 158
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
CG +N AR VF+ M R+VV+W+ +I+ Y + G EA +FEEM+D
Sbjct: 159 --------CGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMP 210
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA------------ 241
+E+ L +++ AC G + R + ++I+ + + L T+L+ MYA
Sbjct: 211 DEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFF 270
Query: 242 -------------------KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKES 282
KCG + +A ++F EK D++ W MI + +E+
Sbjct: 271 RKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEK--KDLVCWTTMISAYVESDYPQEA 328
Query: 283 LELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY----------------------- 319
L +F EM GI PD ++ ++SACA+ G++ +A +
Sbjct: 329 LRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINM 388
Query: 320 ------------FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPT 364
F+ + +R +V ++ M++ALS G+ ++A +M +EP
Sbjct: 389 YAKCGGLDATRDVFEKMPRRNVVS----WSSMINALSMHGEASDALSLFARMKQENVEPN 444
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
+L GC + G ++ GKK+ D L + + + A REA
Sbjct: 445 EVTFVGVLYGCSHSGLVE----EGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREA 500
Query: 425 MET 427
+E
Sbjct: 501 LEV 503
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 146/305 (47%), Gaps = 39/305 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S S G +D + + + W T+I Y +S P +++ +F +M +G+ PD +
Sbjct: 286 SGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVV 345
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
+ + A L + A VH+ I G ES+L I+N+LI+MY CG + R+VF+ M
Sbjct: 346 SMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKM 405
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
P + VSW+SM++ + GE + A +F M + NV
Sbjct: 406 PRRNVVSWSSMINALSMHGEASDALSLFARMKQENV------------------------ 441
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKC 243
+ NEVT V VL C+H G +++G+ + M D+ ++ L ++D++ +
Sbjct: 442 -------EPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRA 494
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLEL--FTEMQIVGITPDEITF 301
++EAL V + S+V+IW +++ +HG LEL F +I+ + PD
Sbjct: 495 NLLREALEVIESMPV-ASNVVIWGSLMSACRIHG----ELELGKFAAKRILELEPDHDGA 549
Query: 302 LGLLS 306
L L+S
Sbjct: 550 LVLMS 554
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 161/407 (39%), Positives = 233/407 (57%), Gaps = 36/407 (8%)
Query: 37 GYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYES 96
GY + + I ++ +ML VSP+ TYP L +A E +HA + K G+ +
Sbjct: 68 GYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGA 127
Query: 97 DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP 156
D F N+LIHMY V++ S+ AR+VF+ MP
Sbjct: 128 DGFSLNNLIHMY---------------------VNFQSL----------EQARRVFDNMP 156
Query: 157 ER--NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQG 214
+R N VSW+A+I YV+ EA +F+ MR ++ S+L AC LGAL+QG
Sbjct: 157 QRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQG 216
Query: 215 RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLA 274
+ + Y+ G+ L L T++IDMY KCG +++A VF+ E Q + WN MIGGLA
Sbjct: 217 KWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFN--ELPQKGISSWNCMIGGLA 274
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKS 333
MHG + ++ELF EM+ + PD ITF+ +LSACAH GLV E ++F+ + + G+ P
Sbjct: 275 MHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGM 334
Query: 334 EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
EH+ CMVD L RAG + EA + I +MP+ P A +LG+L+ C HG +L E +GKK++E
Sbjct: 335 EHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIE 394
Query: 394 LQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L+P + GRYV L+N+YA RW++ R+ M RGVKK PG+S +E
Sbjct: 395 LEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIE 441
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 33/248 (13%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I Y +S +++ +LF +M V D + A L E +H I
Sbjct: 165 WNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIE 224
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K+G E D ++ ++I MY CG + A EVF+ +P K SWN M+ G A G+ A +
Sbjct: 225 KSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIE 284
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F+ M ER +V+ DG +T V+VL ACAH G
Sbjct: 285 LFKEM-EREMVA----PDG--------------------------ITFVNVLSACAHSGL 313
Query: 211 LDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
+++G+ +YM + GL + ++D+ + G ++EA + + + + D + A+
Sbjct: 314 VEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVN-PDAGVLGAL 372
Query: 270 IGGLAMHG 277
+G +HG
Sbjct: 373 VGACRIHG 380
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 79/189 (41%), Gaps = 9/189 (4%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + +V + L I WN +I G + +I LF +M R V+PD +T+ +
Sbjct: 246 GCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVL 305
Query: 71 KASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM- 128
A E + + G + + ++ + G G + AR++ + MP
Sbjct: 306 SACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPD 365
Query: 129 -----SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
++ + G + GE + ++V EL P N + L + Y G +++ +
Sbjct: 366 AGVLGALVGACRIHGNTELGE-QIGKKVIELEPH-NSGRYVLLANLYASAGRWEDVAKVR 423
Query: 184 EEMRDVGSK 192
+ M D G K
Sbjct: 424 KLMNDRGVK 432
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 153/437 (35%), Positives = 251/437 (57%), Gaps = 9/437 (2%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPF 68
+G +D + ++ I WN++I GY++ +++ +F KMLR +SPD T
Sbjct: 225 VGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLAS 284
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK- 127
+ A L K + +H+ I TG++ + N+LI MY CG + AR + + TK
Sbjct: 285 VLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKD 344
Query: 128 MSVS-WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ + + ++LDGY K G+MN A+ +F+ + +R+VV+W+A+I GY + G Y EA+ +F M
Sbjct: 345 LKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSM 404
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ N TL ++L + L +L G+ + + G ++ + +LI MYAK G+I
Sbjct: 405 VGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSI 464
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
A F + + + D + W +MI LA HG +E+LELF M + G+ PD IT++G+ S
Sbjct: 465 TSASRAFDLI-RCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFS 523
Query: 307 ACAHGGLVMEAWYFF---KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
AC H GLV + +F K + K ++P HYACMVD RAG + EA EFI +MP+EP
Sbjct: 524 ACTHAGLVNQGRQYFDMMKDVDK--IIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEP 581
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
GSLL+ C + +DL ++ ++L+ L+P++ G Y L+N+Y+ +W+EA R+
Sbjct: 582 DVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRK 641
Query: 424 AMETRGVKKYPGWSFVE 440
+M+ VKK G+S++E
Sbjct: 642 SMKDGRVKKEQGFSWIE 658
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/436 (28%), Positives = 198/436 (45%), Gaps = 35/436 (8%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SA + G++D SC+ L W T+I GY +K+I + +M+R G+ P
Sbjct: 87 LSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQ 146
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + + E VH+ I K G ++ +SNSL++MY CGD + A+ VFD
Sbjct: 147 FTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDR 206
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M K SWN+M+ + + G+M++A FE M ER++V+W+++I GY + G AL +F
Sbjct: 207 MVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMF 266
Query: 184 EEM-RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
+M RD + TL SVL ACA+L L G + +++ G ++ + +LI MY++
Sbjct: 267 SKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSR 326
Query: 243 CGAIKEA--LIVFHGVEK-----------------------------HQSDVLIWNAMIG 271
CG ++ A LI G + DV+ W AMI
Sbjct: 327 CGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIV 386
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
G HG E++ LF M P+ T +LS + + S K G +
Sbjct: 387 GYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIY 446
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA-EIVGKK 390
++ ++AG +T A + E S++ HG + A E+
Sbjct: 447 SVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETM 506
Query: 391 LVE-LQPDHDGRYVGL 405
L+E L+PDH YVG+
Sbjct: 507 LMEGLRPDHI-TYVGV 521
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 147/277 (53%), Gaps = 30/277 (10%)
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
L L K+ + R A VH ++ K+G +++ N+L+++Y G ++AR++FD
Sbjct: 15 LCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDE 74
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
MP + + SWN++L YAK G+M+ + + F+ +P+R+ VSW+ +I GY G Y +A+ I
Sbjct: 75 MPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIM 134
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
EM G + ++ TL +VL + A L+ G+ + +++ GL + + SL++MYAKC
Sbjct: 135 GEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKC 194
Query: 244 GAIKEALIVFHGV-----------------------------EKHQSDVLIWNAMIGGLA 274
G A +VF + + + D++ WN+MI G
Sbjct: 195 GDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYN 254
Query: 275 MHGFVKESLELFTEM-QIVGITPDEITFLGLLSACAH 310
G+ +L++F++M + ++PD T +LSACA+
Sbjct: 255 QRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACAN 291
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 156/415 (37%), Positives = 243/415 (58%), Gaps = 7/415 (1%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVA--VHAQ 88
W + I +++ ++ F M AGV P+H+T+ L G A+ +H
Sbjct: 39 WTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGY 98
Query: 89 IAKTGYESD-LFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
K G + + + + ++I MY G AR VFD M K SV+WN+M+DGY + G+++
Sbjct: 99 ACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDN 158
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
A ++F+ MPER+++SW+A+I+G+VK G +EAL+ F EM+ G K + V +++ L AC +
Sbjct: 159 AAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTN 218
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
LGAL G + RY++ + + + SLID+Y +CG ++ A VF+ +EK V+ WN
Sbjct: 219 LGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRT--VVSWN 276
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG-K 326
++I G A +G ESL F +MQ G PD +TF G L+AC+H GLV E +F+ +
Sbjct: 277 SVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCD 336
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG-KLDLAE 385
+ P+ EHY C+VD SRAG++ +A + + MP++P ++GSLL C NHG + LAE
Sbjct: 337 YRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAE 396
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ K L +L YV LSN+YA +W+ A R M+ G+KK PG+S +E
Sbjct: 397 RLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIE 451
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 126/268 (47%), Gaps = 33/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + K+ + + W +I G+ K +++ F +M +GV PD++
Sbjct: 154 GQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAAL 213
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L + VH + +++++ +SNSLI +Y CG + +AR+VF M + V
Sbjct: 214 NACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVV 273
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS++ G+A G + E+LV F +M++ G
Sbjct: 274 SWNSVIVGFAANGNAH-------------------------------ESLVYFRKMQEKG 302
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
K + VT L AC+H+G +++G + M D +S + L+D+Y++ G +++A
Sbjct: 303 FKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDA 362
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
L + + ++V+I +++ + HG
Sbjct: 363 LKLVQSMPMKPNEVVI-GSLLAACSNHG 389
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 170/438 (38%), Positives = 243/438 (55%), Gaps = 42/438 (9%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFL 69
G I+ + K+ + + WN +I GY ++ N +++ LF +M+ V PD T +
Sbjct: 169 GYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTV 228
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A + EL VH+ I G+ S+L I N+LI
Sbjct: 229 VSACAQSDSIELGRHVHSWINDHGFASNLKIVNALI------------------------ 264
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
D Y+K GE+ A ++F+ + ++V+SW+ LI GY YKEAL++F+EM
Sbjct: 265 -------DLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 317
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTL----PLQTSLIDMYAKCGA 245
G N+VT++S+L ACAHLGA+D GR + Y I+K L + LQTSLIDMYAKCG
Sbjct: 318 GETPNDVTMLSILPACAHLGAIDIGRWIHVY-INKKLKGVVTNVSSLQTSLIDMYAKCGD 376
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
I A VF ++S + WNAMI G AMHG + ++F+ M++ GI PD+ITF+GLL
Sbjct: 377 IDAAQQVFDSSMSNRS-LSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLL 435
Query: 306 SACAHGGLVMEAWYFFKSLGKRG--MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
SAC+H G++ F+S+ RG + PK EHY CM+D L +G EA E I MP+EP
Sbjct: 436 SACSHSGMLDLGRNIFRSM-TRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEP 494
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ SLL C HG L+L E KKL++++P + G YV LSN+YA RW+E R
Sbjct: 495 DGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRA 554
Query: 424 AMETRGV-KKYPGWSFVE 440
+ +G+ KK PG S +E
Sbjct: 555 LLNDKGMKKKVPGCSSIE 572
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 245/443 (55%), Gaps = 15/443 (3%)
Query: 1 MLSFSALS-YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
+L F +S + Y+ V + P + WNT+ RG++ S +P ++ L++ M+ G+
Sbjct: 26 LLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGL 85
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
PD T+PFL K+ + R+ +H + K G++ D+++ SLI MY G + AR+
Sbjct: 86 LPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARK 145
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD + VS+ +++ GY G + A+++F+ +P ++VVSW+A+I GYV+ G+YKEA
Sbjct: 146 VFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEA 205
Query: 180 LVIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
L +F+EM + + + +E T+V+V+ ACA +++ GR + ++ D G + L + +LID
Sbjct: 206 LELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALID 265
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
+Y+K G ++ A +F G+ DV+ WN +IGG KE+L LF EM G TP++
Sbjct: 266 LYSKFGEVETACELFDGL--WNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPND 323
Query: 299 ITFLGLLSACAH-GGLVMEAW---YFFKSLGKRGMVPK-SEHYACMVDALSRAGQVTEAY 353
+T L +L ACAH G + + W Y K L +G+V S ++D ++ G + A
Sbjct: 324 VTMLSILPACAHLGAIDIGRWIHVYINKKL--KGVVTNVSSLQTSLIDMYAKCGDIDAAQ 381
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLA-EIVGK-KLVELQPDHDGRYVGLSNVYAI 411
+ + S ++++G HG+ + A +I + ++ ++PD D +VGL + +
Sbjct: 382 QVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPD-DITFVGLLSACSH 440
Query: 412 FKRWDEARTTREAMETRGVKKYP 434
D R +M TRG + P
Sbjct: 441 SGMLDLGRNIFRSM-TRGYEITP 462
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 161/443 (36%), Positives = 252/443 (56%), Gaps = 41/443 (9%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ F A+S G I+ KV + + W T+I+ YSK P+++I+ F +M +
Sbjct: 179 LMRFYAVS--GFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRM---NCT 233
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYE--SDLFISNSLIHMYGSCGDIVYAR 118
D +T + A +L L + A + ++ SD+F+ N+L
Sbjct: 234 ADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNAL-------------- 279
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
LD Y KCG+ ++ARQ+F LMP +N+VSW+++I G G +KE
Sbjct: 280 -----------------LDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKE 322
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
AL +F M+ +G K + VTLV VL +CA+LG L+ G+ + Y+ + + +L+D
Sbjct: 323 ALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVD 382
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MYAKCG+I +A +VF ++ DV + AMI G AMHG +L +F+EM +G+ PD
Sbjct: 383 MYAKCGSIDQAFMVFQAMKC--KDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDH 440
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
+T +G+LSAC+H GL+ E F+ + + + P++EHY CMVD L RAG ++EA F
Sbjct: 441 VTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTN 500
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
+MP+ P AS+ GSLL C H K++L E V +KL+E++P+ DG Y+ +SN+Y+ RW +
Sbjct: 501 KMPIVPDASVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRD 560
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
A R+AM+ +KK PG S +E
Sbjct: 561 ALKWRKAMKQNNIKKTPGCSSIE 583
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 160/438 (36%), Positives = 241/438 (55%), Gaps = 3/438 (0%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
F + + G + ++ + +P I + +++ + K + K+IS+F + +G PD
Sbjct: 60 FRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDG 119
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
ASG L + + VH I + G +S+L + N+L+ MY CG AR VFD
Sbjct: 120 FAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDR 179
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M K V+W SML GY KC ++ A F MP ++ VSW+ALI G+V+ +AL +F
Sbjct: 180 MLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELF 239
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
+M G + N +T+V VL ACA +GALD GR + Y + + + +L+DMYAK
Sbjct: 240 GKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKS 299
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G+I A VF V+ D W MI + G ++++ELF +M GI P+ +TF+
Sbjct: 300 GSIASAFSVFEEVQ--MKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVS 357
Query: 304 LLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+LSAC+H GL+ E F + + + P+ EHY CMVD L R G + EA I M +E
Sbjct: 358 VLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVE 417
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P + SLL+ C+ HG LAEI G ++++ +P DG YV L N+YA+ RW EA R
Sbjct: 418 PDIVIWRSLLSACLAHGNDRLAEIAGMEIIKREPGDDGVYVLLWNMYALSNRWKEALDMR 477
Query: 423 EAMETRGVKKYPGWSFVE 440
+ M +R + K PG S++E
Sbjct: 478 KQMLSRKIYKKPGCSWIE 495
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 108/242 (44%), Gaps = 36/242 (14%)
Query: 106 HMYGSCGDI-----VYAREVFDGM-PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
H+ C I ++A+ + G+ P + S+S + YA+ G A ++F+ +P +
Sbjct: 25 HLLTQCKTIRELQRIHAQALTHGLHPNQQSISCK-IFRSYAEFGRPADAGRLFDEIPHPD 83
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
++S+++L+ ++K + +A+ +F G + + V L A LG G ++
Sbjct: 84 IISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHG 143
Query: 220 YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH---------------------GVEK 258
+ GL L + +L+DMY +CG + A VF GV+
Sbjct: 144 LIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDS 203
Query: 259 HQS--------DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
S + W A+I G ++LELF +M + G P+ IT +G+LSACA
Sbjct: 204 ALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACAD 263
Query: 311 GG 312
G
Sbjct: 264 IG 265
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 161/438 (36%), Positives = 240/438 (54%), Gaps = 3/438 (0%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
F + G + + K+ + NP + + +++ + + N ++ISLF +++ AG PD
Sbjct: 54 FRCYADFGRVADARKLFDEIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDG 113
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
AS + + AVH I + G + ++ + N+LI MY CG A +VFD
Sbjct: 114 FAVVGALSASSGAGDQVVGRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDR 173
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M K V+W SML GY KC ++ A F+ +P R+VV+W+ALI G+V+ AL +F
Sbjct: 174 MSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELF 233
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
M G + VT+V VL ACA +GALD GR++ Y SL + + +L+DMYAK
Sbjct: 234 GRMVLEGHRPTHVTIVGVLSACADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKS 293
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G I+ A VF V+ D W MI + G K++LELF +M G+ P+ +TF+
Sbjct: 294 GHIEMAFSVFQEVQS--KDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVPNSVTFVS 351
Query: 304 LLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+LSAC+H GL+ E F + + + P EHY CM+D L R G + EA I M +E
Sbjct: 352 VLSACSHSGLIEEGIELFDRMRQLYKIDPLLEHYGCMIDLLGRGGLLEEAEALIADMNVE 411
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P + SLL+ C+ G LAEI GK++V+ +P DG YV L N+YA +W EAR R
Sbjct: 412 PDIVIWRSLLSACLVRGNNRLAEIAGKEIVKREPGDDGVYVLLWNMYASSNKWREAREMR 471
Query: 423 EAMETRGVKKYPGWSFVE 440
+ M + + K PG S++E
Sbjct: 472 QQMLSLKIFKKPGCSWIE 489
>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 602
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 143/438 (32%), Positives = 250/438 (57%), Gaps = 2/438 (0%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S + LG I + K+ + + WNT++ Y+KS N ++ + ++ R G+ +
Sbjct: 124 LSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNE 183
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
++ L ++ + EL+ H Q+ G+ S+L IS+S++ Y C ++ AR +FD
Sbjct: 184 YSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDE 243
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + ++W +M+ GYA+ G++ AR++F+LMPE+N V+W++LI GY + +AL +F
Sbjct: 244 MIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELF 303
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
+M + + ++ T S LCA A + +L+ G+ + Y+I + + +SLIDMY+KC
Sbjct: 304 TKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKC 363
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G ++ +VF + + DV++WN +I LA HG +E++++F +M +G+ PD IT +
Sbjct: 364 GCLEVGRLVF-DLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIV 422
Query: 304 LLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
LL+AC+H GLV E ++S+ G++P EHYAC++D L RAG + +MP +
Sbjct: 423 LLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCK 482
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P + +LL C HG ++ V +K++EL P YV LS+++A RW+ R
Sbjct: 483 PNDEIWNALLGVCRMHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELVENVR 542
Query: 423 EAMETRGVKKYPGWSFVE 440
+ M R V+K S++E
Sbjct: 543 QLMNERHVRKDRAISWIE 560
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 156/334 (46%), Gaps = 34/334 (10%)
Query: 46 KSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYES-DLFISNSL 104
++IS + R G+ T +L + +L VH + TG + + F++N L
Sbjct: 33 QAISSLGLLSRNGIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHL 92
Query: 105 IHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWS 164
I+MY CGD A +VFD M T+ SWN ML GYAK G++ AR++F+ MPE++VVSW+
Sbjct: 93 INMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWN 152
Query: 165 ALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK 224
++ Y K G +AL + E+R +G NE + +L C + L+ + ++
Sbjct: 153 TMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVA 212
Query: 225 GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK---- 280
G L + +S++D YAKC + +A +F E DVL W M+ G A G V+
Sbjct: 213 GFLSNLVISSSVLDAYAKCSEMGDARRLFD--EMIIRDVLAWTTMVSGYAQWGDVEAARE 270
Query: 281 ---------------------------ESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313
++LELFT+M + I PD+ TF L A A
Sbjct: 271 LFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIAS 330
Query: 314 VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347
+ L + + P + + ++D S+ G
Sbjct: 331 LNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCG 364
>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 802
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 163/443 (36%), Positives = 250/443 (56%), Gaps = 7/443 (1%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGV 59
M+S A +LG +D + + ++ + I WN VI GY+++ K++ F +ML + +
Sbjct: 234 MVSLDA--HLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTM 291
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
+PD T + A L + VHA I ++ ++N+LI MY G + AR
Sbjct: 292 APDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARG 351
Query: 120 VFDG--MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
V M +S+ ++L+GY K G+M AR++F++M R+VV+W+A+I GY + G
Sbjct: 352 VMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHND 411
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
EA+ +F M G + N T+ +VL CA L L+ G+ + I + + S++
Sbjct: 412 EAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIV 471
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
MYA+ G++ A VF V + + + W +MI LA HG ++++ LF EM VG+ PD
Sbjct: 472 TMYARSGSLPWARRVFDRVH-WRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPD 530
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFI 356
ITF+G+LSAC H G V E +F+ L K G+VP+ HYACMVD L+RAG +EA EFI
Sbjct: 531 RITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFI 590
Query: 357 CQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWD 416
QMP+EP A GSLL+ C H DLAE+ +KL+ + P + G Y LSNVY+ RW+
Sbjct: 591 QQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWN 650
Query: 417 EARTTREAMETRGVKKYPGWSFV 439
+A + + + VKK G+S+
Sbjct: 651 DAAKIWKRRKDKSVKKETGFSWT 673
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 154/311 (49%), Gaps = 32/311 (10%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W ++ G ++ ++I +F+ M+ G+SP T + + R + VH+ +
Sbjct: 130 WTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVV 189
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G S + ++NS+++MYG CGD AR VF+ MP + SWN+M+ A G M++A
Sbjct: 190 KLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALS 249
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA-NEVTLVSVLCACAHLG 209
+FE MP+R +VSW+A+I GY + G +AL F M + A +E T+ SVL ACA+LG
Sbjct: 250 LFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLG 309
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH--------------- 254
+ G+ + Y++ + + +LI MYAK G+++ A V
Sbjct: 310 MVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTAL 369
Query: 255 -------GVEKH---------QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
G KH DV+ W AMI G +G E++ELF M G P+
Sbjct: 370 LEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNS 429
Query: 299 ITFLGLLSACA 309
T +LS CA
Sbjct: 430 YTVAAVLSVCA 440
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 143/306 (46%), Gaps = 51/306 (16%)
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY-----AREVFDGMPT--KMSVSWNSML 136
A+HA+ K G + ++ N+L+ Y AR +FD +P + +WNS+L
Sbjct: 44 AIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEIPAAQRNVFTWNSLL 103
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
YAK G + AR VF MPER+ VSW+ ++ G + G + EA+ +F +M G +
Sbjct: 104 SLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQF 163
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH-- 254
TL +VL +CA A GR + +++ GLS +P+ S+++MY KCG + A VF
Sbjct: 164 TLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERM 223
Query: 255 ------------GVEKH---------------QSDVLIWNAMIGGLAMHGFVKESLELFT 287
++ H ++ WNA+I G +G ++L F+
Sbjct: 224 PERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFS 283
Query: 288 EM-QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA 346
M + PDE T +LSACA+ G+V S+GK+ H + +
Sbjct: 284 RMLSYSTMAPDEFTITSVLSACANLGMV--------SIGKQ------VHAYILRSRMPYI 329
Query: 347 GQVTEA 352
GQVT A
Sbjct: 330 GQVTNA 335
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 148/430 (34%), Positives = 240/430 (55%), Gaps = 2/430 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ID + ++ + + +NT++ Y++ +++++ +ML+ G PD +T
Sbjct: 281 GAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAI 340
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
AS +L H + + G E I N +I MY CG A VFD M K V
Sbjct: 341 SASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVV 400
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS+ G+ + G++ A +VF +PERN V W+ +I G V+ +++A+ +F EM+ G
Sbjct: 401 SWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEG 460
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
KA+ VT++ + AC +LGA + + + Y+ G+ + L T+L+DM+A+CG + A+
Sbjct: 461 IKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAM 520
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF+ + + DV W A IG +AM G + + LF +M I G+ PD + F+ +L+AC+H
Sbjct: 521 QVFNKMT--ERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSH 578
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GG V + + F + G+ P+ EHY CMVD L RAG + EA++ I MP+EP + GS
Sbjct: 579 GGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGS 638
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL C H +++A +++ EL P G +V LSN+YA +W + R + +GV
Sbjct: 639 LLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGV 698
Query: 431 KKYPGWSFVE 440
+K PG S V+
Sbjct: 699 RKVPGSSSVQ 708
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 152/287 (52%), Gaps = 33/287 (11%)
Query: 24 SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAV 83
S+ +F N++IRGYS + ++I L+V+ML GV+P+H T+PF+ ++A +
Sbjct: 92 SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
VH + K G E D+FI N LIH Y A+CG
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFY-------------------------------AECG 180
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
M+ +VFE M ERNVVSW++LI GY + KEA+ +F EM + G + + VT+V V+
Sbjct: 181 HMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVIS 240
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
ACA L LD G + Y+ + GL L + +L+DMY KCGAI A +F E ++
Sbjct: 241 ACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFD--ECVDRNL 298
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+++N ++ A G +E+L + EM G PD +T L +SA A
Sbjct: 299 VLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQ 345
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 106/417 (25%), Positives = 181/417 (43%), Gaps = 61/417 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D+ KV +S + W ++I GY++ P +++SLF +M+ AG+ P +T +
Sbjct: 180 GHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVI 239
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A +L ++ V A I + G + + + N+L+ MY CG I A+ +FD + V
Sbjct: 240 SACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLV 299
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+N++L YA+ G +AR EAL I +EM G
Sbjct: 300 LYNTILSNYARQG---LAR----------------------------EALAILDEMLQQG 328
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ + VT++S + A A L L G++ Y+I GL + +IDMY KCG + A
Sbjct: 329 PRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMAC 388
Query: 251 IVFHGVEKH-----------------------------QSDVLIWNAMIGGLAMHGFVKE 281
VF + + + + WN MI GL ++
Sbjct: 389 RVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFED 448
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
++ELF EMQ GI D +T +G+ SAC + G A + + K G+ +VD
Sbjct: 449 AIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVD 508
Query: 342 ALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE-LQPD 397
+R G A + +M ++ ++ T M + + L++ ++PD
Sbjct: 509 MFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPD 565
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 8/194 (4%)
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER-----NVVSWSALIDGYVKCGD 175
D +P+ ++ N+ + A ++ AR+ FEL E + ++LI GY G
Sbjct: 53 LDQIPSTLTKLVNAGAE-IASPESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGL 111
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
+EA++++ M +G N T VL C + A +G + ++ GL + +Q
Sbjct: 112 GREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNC 171
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
LI YA+CG + VF G+ + +V+ W ++I G A KE++ LF EM GI
Sbjct: 172 LIHFYAECGHMDHGHKVFEGMS--ERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIR 229
Query: 296 PDEITFLGLLSACA 309
P +T + ++SACA
Sbjct: 230 PSSVTMVCVISACA 243
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 9/144 (6%)
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
LDQ L +++ G + P YA+ +A +F + + + N++I
Sbjct: 53 LDQIPSTLTKLVNAGAEIASPESLD----YAR-----KAFELFKEDVRSDDALFMLNSLI 103
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
G + G +E++ L+ M ++G+TP+ TF +LS C E S+ K G+
Sbjct: 104 RGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLE 163
Query: 331 PKSEHYACMVDALSRAGQVTEAYE 354
C++ + G + ++
Sbjct: 164 EDVFIQNCLIHFYAECGHMDHGHK 187
>gi|357120906|ref|XP_003562165.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Brachypodium distachyon]
Length = 529
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 157/446 (35%), Positives = 243/446 (54%), Gaps = 27/446 (6%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
++ Y+ +++ H P F WNT IR S P+ +++LF+ MLR+ P+ T+P L
Sbjct: 84 DVAYAARLVRHHPRPNAFMWNTAIRALSDGPGPDAAVALFLDMLRSPTPPERRTFPSLFA 143
Query: 72 ASGRLAKRE----LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD-----IVYAR--EV 120
+ RL R A+H + K G D ++ NS+I MY S G ++Y + +
Sbjct: 144 SYARLGVRADDDGAGAALHGMVLKLGLAGDAYVRNSMIAMYASWGRADEALLLYGQCGQA 203
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD V+ NS + + G ++ AR+VF+ MP R V +WSA++ Y + ++A+
Sbjct: 204 FD------VVACNSAIVALTRAGRVDEAREVFDAMPARTVATWSAMVSAYSRAARCQDAV 257
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F M+ G + N LVSVL CA LGAL+QG + Y+ G+++ + T+L+DMY
Sbjct: 258 ELFSAMQASGVEPNANVLVSVLGCCAALGALEQGAWVHAYIDKHGVAMNALVVTALVDMY 317
Query: 241 AKCGAIKEALIVF-----HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
KCG+I +A VF G+ K S WNAM+ GLA+HG +E+L LF+E++ G++
Sbjct: 318 CKCGSIHKARHVFDASRSQGLAKLSS----WNAMMLGLAVHGQCQEALALFSELETYGLS 373
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYE 354
PD +TF+ +L A H G+ EA F ++ + + P EHY C+VDAL+RAG++ EA +
Sbjct: 374 PDNVTFITILMAYGHSGMADEAKALFSAMEREYAVTPGIEHYGCLVDALARAGRLGEAED 433
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414
I MP+ P ++ G+LL+GC HG + +E P G YV ++V A
Sbjct: 434 VIRTMPMRPDTAIWGALLSGCRLHGDAEAGARAASGAMECDPQDSGAYVLAASVLARDGE 493
Query: 415 WDEARTTREAMETRGVKKYPGWSFVE 440
+ RE M GV K PG S +E
Sbjct: 494 VGAGVSVRERMRVEGVAKVPGCSMIE 519
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 119/274 (43%), Gaps = 32/274 (11%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
AL+ G +D + +V + + W+ ++ YS++ ++ LF M +GV P+
Sbjct: 215 ALTRAGRVDEAREVFDAMPARTVATWSAMVSAYSRAARCQDAVELFSAMQASGVEPNANV 274
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ L E VHA I K G + + +L+ MY CG I AR VFD
Sbjct: 275 LVSVLGCCAALGALEQGAWVHAYIDKHGVAMNALVVTALVDMYCKCGSIHKARHVFDA-- 332
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
S G AK + SW+A++ G G +EAL +F E
Sbjct: 333 --------SRSQGLAK------------------LSSWNAMMLGLAVHGQCQEALALFSE 366
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ--TSLIDMYAKC 243
+ G + VT +++L A H G D+ + + M ++ ++T ++ L+D A+
Sbjct: 367 LETYGLSPDNVTFITILMAYGHSGMADEAKALFSAM-EREYAVTPGIEHYGCLVDALARA 425
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
G + EA V + + D IW A++ G +HG
Sbjct: 426 GRLGEAEDVIRTMPM-RPDTAIWGALLSGCRLHG 458
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 157/414 (37%), Positives = 233/414 (56%), Gaps = 34/414 (8%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ WN ++ Y K+ + + + +F ML GV+ D +T + A GR+ +L V
Sbjct: 186 VVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAG 245
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
+ + G + + +L+ MY AKCGE+
Sbjct: 246 HVDEEGLARNPKLVTALMDMY-------------------------------AKCGEIGK 274
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
AR++F+ M R+VV+WSA+I GY + +EAL +F EM+ + N+VT+VSVL ACA
Sbjct: 275 ARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAV 334
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
LGAL+ G+ + Y+ K LSLT L T+L+D YAKCG I +A+ F + S W
Sbjct: 335 LGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNS--WTWT 392
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327
A+I G+A +G +E+LELF+ M+ GI P ++TF+G+L AC+H LV E F S+ +
Sbjct: 393 ALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARD 452
Query: 328 -GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
G+ P+ EHY CMVD L RAG V EAY+FI MP+EP A + +LL+ C H + + E
Sbjct: 453 YGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEE 512
Query: 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
K+++ L P H G YV LSN+YA +W +A R+ M+ RG++K PG S +E
Sbjct: 513 ALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIE 566
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 185/360 (51%), Gaps = 39/360 (10%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS--PDHLTYPFLAKASGRLAKRE 80
LS P +N ++R + + +P ++ LF++ML A + D T K+ R+ +
Sbjct: 81 LSTP---CYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALD 137
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
+ V A K G +D F+ +SLIHMY S
Sbjct: 138 VGRGVQAYAVKRGLVADRFVLSSLIHMYAS------------------------------ 167
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
CG++ AR VF+ E VV W+A++ Y+K GD+ E + +F+ M +VG +EVTLVS
Sbjct: 168 -CGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVS 226
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
V+ AC +G G+ + ++ ++GL+ L T+L+DMYAKCG I +A +F G++
Sbjct: 227 VVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSR- 285
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
DV+ W+AMI G +E+L LF+EMQ+ + P+++T + +LSACA G + +
Sbjct: 286 -DVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWV 344
Query: 321 FKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
+ ++ + + +VD ++ G + +A E MP++ + + +L+ G +G+
Sbjct: 345 HSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWT-ALIKGMATNGR 403
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 138/324 (42%), Gaps = 42/324 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I + ++ + + + W+ +I GY+++ +++ LF +M A V P+ +T +
Sbjct: 270 GEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVL 329
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L E VH+ + + + +L+ Y CG I A E F+ MP K S
Sbjct: 330 SACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSW 389
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W +++ G A G +EAL +F MR+ G
Sbjct: 390 TWTALIKGMATNGR-------------------------------GREALELFSSMREAG 418
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ +VT + VL AC+H +++GR M D G+ + ++D+ + G + EA
Sbjct: 419 IEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEA 478
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMH---GFVKESLELFTEMQIVGITPDEITFLGLLS 306
F + + +IW A++ A+H G +E+L+ QI+ + P LLS
Sbjct: 479 Y-QFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALK-----QIISLNPSHSGDYVLLS 532
Query: 307 AC-AHGGLVMEAWYFFKSLGKRGM 329
A G +A K + RG+
Sbjct: 533 NIYASAGQWKDAAMVRKEMKDRGI 556
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 159/431 (36%), Positives = 239/431 (55%), Gaps = 34/431 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
++ Y+ + +S P I +N++ RGYS+ NP + SLFV++L G+ PD+ T+P L
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA E +H K G + ++++ +LI+MY C D+
Sbjct: 137 KACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDV---------------- 180
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+ AR VF+ + E VV ++A+I GY + EAL +F EM+
Sbjct: 181 ---------------DSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKY 225
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K NE+TL+SVL +CA LG+LD G+ + +Y + + T+LIDM+AKCG++ +A+
Sbjct: 226 LKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAV 285
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F + D W+AMI A HG ++S+ +F M+ + PDEITFLGLL+AC+H
Sbjct: 286 SIFEKMR--YKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSH 343
Query: 311 GGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
G V E YF + + K G+VP +HY MVD LS AG + +AYEFI ++P+ PT +
Sbjct: 344 TGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWR 403
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
LL C +H LDLAE V +++ EL H G YV LSN+YA K+W+ + R+ M+ R
Sbjct: 404 ILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRK 463
Query: 430 VKKYPGWSFVE 440
K PG S +E
Sbjct: 464 AVKVPGCSSIE 474
>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 558
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 159/431 (36%), Positives = 247/431 (57%), Gaps = 39/431 (9%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
++ Y+ V S + +P +NT+IR +S+ P+ S+ F M G+ D+ T+PF+ K
Sbjct: 37 SLSYARYVFSRIPSPDTIAYNTIIRSHSRFF-PSHSLFYFFSMRSNGIPLDNFTFPFVLK 95
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A RL ++ + +H+ I K G +SD+F+ N+LI +YG
Sbjct: 96 ACSRL---QINLHLHSLIVKYGLDSDIFVQNALICVYG---------------------- 130
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DVG 190
CG + MA +VF+ M ER+ VSWS +I ++ G EAL +FE+M+ +
Sbjct: 131 ---------YCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDK 181
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+EVT++SV+ A +HLG L+ GR + ++ GL +++ L T+LIDM+++CG+I E++
Sbjct: 182 VVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESI 241
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+VF + +VL W A+I GL +HG E+L +F M+ G+ PD +TF G+L AC+H
Sbjct: 242 VVFEKMAVR--NVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACSH 299
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GGLV E W F+S+ K M P +HY CMVD L RAG + EAY+F+ +MP++P + +
Sbjct: 300 GGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWR 359
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C+NH L LAE V K+ ++ +G V LSNVY RW E + R M +
Sbjct: 360 TLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKR 419
Query: 430 VKKYPGWSFVE 440
+ K PG S +
Sbjct: 420 IGKEPGCSSIN 430
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 116/277 (41%), Gaps = 46/277 (16%)
Query: 9 YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYP 67
Y G+++ + KV +S W+TVI + + ++++ LF KM L V PD +T
Sbjct: 131 YCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTML 190
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A L EL V A I + G + + +LI M+ CG I + VF+ M +
Sbjct: 191 SVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVR 250
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
++W +ALI+G G EAL +F MR
Sbjct: 251 NVLTW-------------------------------TALINGLGVHGRSTEALAMFHSMR 279
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLR-----YMIDKGLSLTLPLQTSLIDMYAK 242
G + + VT VL AC+H G + +G + Y +D L ++D+ +
Sbjct: 280 KSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDP----LLDHYGCMVDILGR 335
Query: 243 CGAIKEALIVFHGVEK--HQSDVLIWNAMIGGLAMHG 277
G + EA + VE+ + + +IW ++G H
Sbjct: 336 AGLLNEA---YDFVERMPMKPNSIIWRTLLGACVNHN 369
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 8/150 (5%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
S G+ID S V ++ + W +I G +++++F M ++GV PD++T+
Sbjct: 231 FSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTF 290
Query: 67 P--FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISN--SLIHMYGSCGDIVYAREVFD 122
+A + G L K + I K Y D + + ++ + G G + A + +
Sbjct: 291 SGVLVACSHGGLVKE--GWDIFESIRKV-YRMDPLLDHYGCMVDILGRAGLLNEAYDFVE 347
Query: 123 GMPTK-MSVSWNSMLDGYAKCGEMNMARQV 151
MP K S+ W ++L + +A +V
Sbjct: 348 RMPMKPNSIIWRTLLGACVNHNNLGLAEKV 377
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 157/418 (37%), Positives = 243/418 (58%), Gaps = 7/418 (1%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRL--AKRELAVAV 85
I W + I ++S ++ F M AGV P H+T+ L G L +
Sbjct: 11 IVSWTSRITLLTRSAXLAEAAKEFADMRLAGVEPTHITFIALLSGCGDFPSGSETLGDLL 70
Query: 86 HAQIAKTGYESD-LFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
H K G + + + + +++ MY G + AR VFD M K SV+WN+M+DGY + G+
Sbjct: 71 HGYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRSGQ 130
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
++ A ++F+ MPE +++SW+A+++G+VK G ++EALV F EM+ G K + V +++ L A
Sbjct: 131 VHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYVAIIAALNA 190
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
C +LGAL G + RY++ + + + SLID+Y +CG ++ A VF +EK V+
Sbjct: 191 CTNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRT--VV 248
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
WN++I G A +G ESL F +MQ G P+ +TF G L+AC+H GLV E FF+S+
Sbjct: 249 SWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTFTGALTACSHVGLVDEGLRFFQSM 308
Query: 325 GKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD- 382
+ + P+ EHY C+VD SRAG++ +A + + MP++P ++GSLL C NHG
Sbjct: 309 KRDYNISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVIGSLLAACRNHGNNTV 368
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
LAE + K L +L YV LSN+YA +W+ A R M+ G+KK PG+S +E
Sbjct: 369 LAERLMKHLSDLNVKSHSNYVILSNMYAADAKWEGASRMRRKMKGLGLKKQPGFSSIE 426
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 131/302 (43%), Gaps = 64/302 (21%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR----------- 56
S G + + V ++ + WNT+I GY +S + ++ LF KM
Sbjct: 95 SKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMVN 154
Query: 57 --------------------AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYES 96
+GV PD++ A L L + VH + +++
Sbjct: 155 GFVKKGFHEEALVWFREMQISGVKPDYVAIIAALNACTNLGALSLGLWVHRYVMSQDFKN 214
Query: 97 DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP 156
++ +SNSLI +Y CG + +AREVFD M + VSWNS++ G+A G +
Sbjct: 215 NVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAH---------- 264
Query: 157 ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRM 216
E+LV F +M++ G K N VT L AC+H+G +D+G
Sbjct: 265 ---------------------ESLVYFRKMQEEGFKPNAVTFTGALTACSHVGLVDEGLR 303
Query: 217 MLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAM 275
+ M D +S + L+D+Y++ G +++AL V + ++V+I +++
Sbjct: 304 FFQSMKRDYNISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVI-GSLLAACRN 362
Query: 276 HG 277
HG
Sbjct: 363 HG 364
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 162/435 (37%), Positives = 241/435 (55%), Gaps = 35/435 (8%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+I KV + + W T+I+ ++K+ ++++ F++M + D T
Sbjct: 157 SVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLV 216
Query: 68 FLAKASGRLAKRELAVAVHAQIAK-TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A L L VH+ I ++D+F+ N+L
Sbjct: 217 VVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNAL---------------------- 254
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
LD Y KC ++N A +VF+ MP +NVV+W+A+I G G Y+EAL F M
Sbjct: 255 ---------LDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMM 305
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+D G K +EVTLV VL +CA+LG L+ G+ + YM + + +L+DMYAKCG+I
Sbjct: 306 QDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSI 365
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
EA VF +++ DV + AMI GLA+HG + ++F+EM VGI P+E+TFLGLL
Sbjct: 366 DEAFRVFESMKRR--DVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLM 423
Query: 307 ACAHGGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC+HGGLV E YFF+ K + P++EHY CM+D L RAG V EA E I +M + P
Sbjct: 424 ACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDV 483
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
G+LL C HG +D+ E V +KL EL PD +G Y+ ++N+Y+ RW +A R+ M
Sbjct: 484 FACGALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTM 543
Query: 426 ETRGVKKYPGWSFVE 440
+ + ++K PG S +E
Sbjct: 544 KNKKMRKTPGCSLIE 558
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 166/437 (37%), Positives = 243/437 (55%), Gaps = 39/437 (8%)
Query: 2 LSFSAL----SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA 57
+SF+AL + G +D + ++ + WN +I GY++S ++++ F +M RA
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258
Query: 58 GVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYA 117
V+P+ T + A + EL V + I G S+L + N+LI MY
Sbjct: 259 NVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMY--------- 309
Query: 118 REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
+KCG+++ AR +FE + E++++SW+ +I GY YK
Sbjct: 310 ----------------------SKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYK 347
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT-LPLQTSL 236
EAL +F +M+ + N+VT VS+L ACA+LGALD G+ + Y+ K L LT L TSL
Sbjct: 348 EALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSL 407
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
IDMYAKCG I+ A VF G++ + WNAMI GLAMHG +LELF +M+ G P
Sbjct: 408 IDMYAKCGNIEAAKQVFAGMKP--KSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEP 465
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEF 355
D+ITF+G+LSAC+H GLV F S+ + + PK +HY CM+D L RAG EA
Sbjct: 466 DDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEAL 525
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
+ M ++P ++ GSLL C HG ++L E K L EL+P++ G YV LSN+YA RW
Sbjct: 526 MKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRW 585
Query: 416 DEARTTREAMETRGVKK 432
D+ R + +G+KK
Sbjct: 586 DDVARIRTKLNDKGMKK 602
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 138/408 (33%), Positives = 232/408 (56%), Gaps = 7/408 (1%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ F A+S GN+ Y+ + + P F WNT+IRG S S +P +I +V+ML GV
Sbjct: 70 LIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVE 129
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ T+PFL K+ ++ + +H + K G ESD F+ SLI+MY G++ YA V
Sbjct: 130 PNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELV 189
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
F + +VS+ +++ GY G ++ AR++FE +P R+ VSW+A+I GY + G ++EAL
Sbjct: 190 FSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEAL 249
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
F+EM+ NE T+V+VL ACA G+L+ G + ++ D GL L L +LIDMY
Sbjct: 250 AFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMY 309
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
+KCG + +A +F G+ + D++ WN MIGG + KE+L LF +MQ + P+++T
Sbjct: 310 SKCGDLDKARDLFEGI--CEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVT 367
Query: 301 FLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+ +L ACA+ G L + W K + + + ++D ++ G + A + M
Sbjct: 368 FVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGM 427
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRYVGL 405
+ S ++++G HG ++A + +++ + +PD D +VG+
Sbjct: 428 KPKSLGSW-NAMISGLAMHGHANMALELFRQMRDEGFEPD-DITFVGV 473
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 163/362 (45%), Gaps = 41/362 (11%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G++D + + + I WN +I GYS + ++++LF KM ++ V P+ +T+
Sbjct: 310 SKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFV 369
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A L +L +HA I K F G+ T
Sbjct: 370 SILPACAYLGALDLGKWIHAYIDKK----------------------------FLGL-TN 400
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
S+ W S++D YAKCG + A+QVF M +++ SW+A+I G G AL +F +MR
Sbjct: 401 TSL-WTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMR 459
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAI 246
D G + +++T V VL AC+H G ++ GR M+ D +S L +ID+ + G
Sbjct: 460 DEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLF 519
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
EA + +E + D IW +++G +HG V+ L F + + P+ LLS
Sbjct: 520 DEAEALMKNMEM-KPDGAIWGSLLGACRVHGNVE--LGEFAAKHLFELEPENPGAYVLLS 576
Query: 307 AC-AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS-----RAGQVTEAYEFICQMP 360
A G + L +GM + Y M+D + R G V + E + M
Sbjct: 577 NIYATAGRWDDVARIRTKLNDKGMKKXQDIYK-MLDEIDQSFGERPGXVPDTSEVLYDMD 635
Query: 361 LE 362
E
Sbjct: 636 EE 637
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 92/391 (23%), Positives = 149/391 (38%), Gaps = 107/391 (27%)
Query: 85 VHAQIAKTGYESDLFISNSLIHM--YGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+H+QI KTG + F + LI G++ YA +F+ + WN+M+ G
Sbjct: 51 IHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRG---- 106
Query: 143 GEMNMARQVFELMPERNVVSWSAL--IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
N +S S + ID YV+ M G + N T
Sbjct: 107 ----------------NSLSSSPVGAIDFYVR-------------MLLCGVEPNSYTFPF 137
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
+L +CA +GA +G+ + +++ GL + TSLI+MYA+ G + A +VF
Sbjct: 138 LLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRD 197
Query: 261 S-----------------------------DVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
+ D + WNAMI G A G +E+L F EM+
Sbjct: 198 AVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKR 257
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTE 351
+ P+E T + +LSACA G + + + G+ ++D S+ G + +
Sbjct: 258 ANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDK 317
Query: 352 A---YEFIC-------------------------------QMPLEPTASMLGSLLTGCMN 377
A +E IC Q +EP S+L C
Sbjct: 318 ARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAY 377
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNV 408
G LDL + + + D +++GL+N
Sbjct: 378 LGALDLGKWIHAYI-------DKKFLGLTNT 401
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 159/434 (36%), Positives = 243/434 (55%), Gaps = 10/434 (2%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD-HLTYPFL 69
G +D S +L +P ++ + I +S + +++L ML G+ P H L
Sbjct: 337 GRLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASL 396
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM-PTKM 128
G R A+H K D +++ +L+ MY GD AR +FD M P
Sbjct: 397 PACRGLSPGR----ALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPH 452
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
VS +ML YA G ++ AR +F+ +P ++ V W+A+IDGY + G EAL +F M
Sbjct: 453 VVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLG 512
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIK 247
G + +EVT+V VL A A LG ++ G+ + Y+ + + + L++ + T+LIDMY KCG++
Sbjct: 513 SGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLG 572
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
+A+ VFHG+ D+++WNAMI G AMHG +++LE+F + + G+ P +ITF+GLL+A
Sbjct: 573 DAVDVFHGIG--DKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNA 630
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H G+V E FF+S+ + G+ PK EHY CMVD L RAG + EA+ + M + P A
Sbjct: 631 CSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAV 690
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
M SLL C H + L + + LV + G Y+ LSN+YA W E R M+
Sbjct: 691 MWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMK 750
Query: 427 TRGVKKYPGWSFVE 440
G++K PG S +E
Sbjct: 751 ASGIQKEPGCSSIE 764
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 126/269 (46%), Gaps = 34/269 (12%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G +D + + L WN +I GY++ PN+++ LF +ML +GV PD +T +
Sbjct: 466 MGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLV 525
Query: 70 AKASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A +L E +H+ + + + + + +LI MY CG + A +VF G+ K
Sbjct: 526 LSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKD 585
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
V WN+M++GYA GD ++AL +F + R+
Sbjct: 586 IVVWNAMINGYA-------------------------------MHGDSRKALEMFVQSRE 614
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIK 247
G ++T + +L AC+H G +++GR + M + G+ + ++D+ + G IK
Sbjct: 615 QGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIK 674
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
EA + + K D ++W +++ +H
Sbjct: 675 EAFCLVQSM-KITPDAVMWVSLLAACRLH 702
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 154/426 (36%), Positives = 241/426 (56%), Gaps = 36/426 (8%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+VL + + W +I GYS+ ++++ LFV+ML +G +P+ T+ + + +
Sbjct: 66 RVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSS 125
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+L +H+ + KT +ES +F+ +SL+ MY G I AR VFDG+P + VS +++
Sbjct: 126 GFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIIS 185
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
GYA+ G +D +EAL +F ++ G ++N VT
Sbjct: 186 GYAQLG-----------------------LD--------EEALDLFRRLQREGMRSNYVT 214
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
SVL A + L ALD GR + +++ L + LQ SLIDMY+KCG++ + +F +
Sbjct: 215 YASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP 274
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACAHGGLVME 316
+ V+ WNAM+ G + HG +E++ELF M+ + PD +TFL +LS C+HGG+
Sbjct: 275 --ERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDR 332
Query: 317 AWYFFKSL--GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
F + K G P+ EHY C+VD RAG+V EA+EFI +MP EPTA++ GSLL
Sbjct: 333 GLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGA 392
Query: 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
C H + + E V ++L+E++ ++ G YV LSN+YA RWD+ RT RE M+ + V K P
Sbjct: 393 CRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEP 452
Query: 435 GWSFVE 440
G S++E
Sbjct: 453 GRSWIE 458
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 146/314 (46%), Gaps = 49/314 (15%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VHA + KT YE +++ LI +Y C +C
Sbjct: 32 VHAHMIKTCYEPPVYLRTRLIVLYNKC-----------------------------RC-- 60
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
+ AR+V + MPERNVVSW+A+I GY + G EAL +F EM G+ NE T +VL +
Sbjct: 61 LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
C GR + +I + + +SL+DMYAK G I EA VF G+ + DV+
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP--ERDVV 178
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
A+I G A G +E+L+LF +Q G+ + +T+ +L+A + G ++ S
Sbjct: 179 SCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALS-GLAALDHGRQVHSH 237
Query: 325 GKRGMVPKSEHYAC----MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
R +P Y ++D S+ G +T + MP E T ++L G HG
Sbjct: 238 VLRAKLP---FYVVLQNSLIDMYSKCGSLTYSRRIFDSMP-ERTVISWNAMLVGYSKHG- 292
Query: 381 LDLAEIVGKKLVEL 394
+G++ VEL
Sbjct: 293 ------LGREAVEL 300
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 126/270 (46%), Gaps = 37/270 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I + +V L + +I GY++ +++ LF ++ R G+ +++TY +
Sbjct: 160 GKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVL 219
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A LA + VH+ + + + + NSLI MY CG + Y+R +FD MP + +
Sbjct: 220 TALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVI 279
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+ML GY+K G A ++F+LM E N V
Sbjct: 280 SWNAMLVGYSKHGLGREAVELFKLMKEENKV----------------------------- 310
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK--GLSLTLPLQTSLIDMYAKCGAIKE 248
K + VT ++VL C+H G D+G + M+++ G + ++D++ + G ++E
Sbjct: 311 -KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEE 369
Query: 249 ALIVFHGVEK--HQSDVLIWNAMIGGLAMH 276
A F ++K + IW +++G +H
Sbjct: 370 A---FEFIKKMPFEPTAAIWGSLLGACRVH 396
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 12/166 (7%)
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
SVL C A+ +G+ + +MI + L+T LI +Y KC + +A V E
Sbjct: 15 SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLD--EMP 72
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG-----GLV 314
+ +V+ W AMI G + G+ E+L LF EM + G P+E TF +L++C G
Sbjct: 73 ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ 132
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+ + S V S ++D ++AG++ EA +P
Sbjct: 133 IHSLVIKTSFESHIFVGSS-----LLDMYAKAGKICEARRVFDGLP 173
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 15/192 (7%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTY 66
S G++ YS ++ + + WN ++ GYSK +++ LF M V PD +T
Sbjct: 258 SKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVT- 316
Query: 67 PFLAKAS----GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
FLA S G + R L + K G+E ++ ++ ++G G + A E
Sbjct: 317 -FLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIK 375
Query: 123 GMPTKMSVS-WNSMLDG-----YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
MP + + + W S+L GE +AR++ E+ E N ++ L + Y G +
Sbjct: 376 KMPFEPTAAIWGSLLGACRVHQNVHIGEF-VARRLLEIESE-NAGNYVILSNLYASAGRW 433
Query: 177 KEALVIFEEMRD 188
+ + E M++
Sbjct: 434 DDVRTVRELMKE 445
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 154/415 (37%), Positives = 236/415 (56%), Gaps = 19/415 (4%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WNT+I GY++ +++ LF + SP + + A SG + L A
Sbjct: 238 WNTMISGYAQGGGLSQARRLFDE------SPTRDVFTWTAMVSGYVQNGML------DEA 285
Query: 91 KTGY----ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
KT + E + N++I Y + ARE+F+ MP + SWN+M+ GY + G++
Sbjct: 286 KTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIA 345
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
AR+ F++MP+R+ VSW+A+I GY + G Y+EAL +F E++ G N T L CA
Sbjct: 346 QARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCA 405
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
+ AL+ G+ + + G + +L+ MY KCG+I EA F G+E + DV+ W
Sbjct: 406 DIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIE--EKDVVSW 463
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
N M+ G A HGF +++L +F M+ G+ PDEIT +G+LSAC+H GL+ +F S+ K
Sbjct: 464 NTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTK 523
Query: 327 R-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
G++P S+HY CM+D L RAG++ EA + I MP +P A+ G+LL HG +L E
Sbjct: 524 DYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGE 583
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ + +++P + G YV LSN+YA RW +A R M GV+K PG+S+VE
Sbjct: 584 KAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVE 638
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 127/269 (47%), Gaps = 33/269 (12%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G+I + K + W +I GY++S + +++++FV++ + G S + T+
Sbjct: 341 IGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCA 400
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+A EL +H Q K GY + F+ N+L+ MY CG I A + F+G+ K
Sbjct: 401 LSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDV 460
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSWN+ML GYA+ G RQ AL +FE M+
Sbjct: 461 VSWNTMLAGYARHG---FGRQ----------------------------ALTVFESMKTA 489
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKE 248
G K +E+T+V VL AC+H G LD+G M D G+ T T +ID+ + G ++E
Sbjct: 490 GVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEE 549
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
A + + Q W A++G +HG
Sbjct: 550 AQDLIRNM-PFQPGAASWGALLGASRIHG 577
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 163/347 (46%), Gaps = 32/347 (9%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYPFLAKASGRLAKREL 81
+ +P I WN I + ++ + + ++ +F M R+ VS + + +L R +K L
Sbjct: 44 VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYL-----RNSKFNL 98
Query: 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
A + Q+ E DLF N ++ Y + AR +FD MP K VSWNS+L GYA+
Sbjct: 99 ARNLFDQMP----ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQ 154
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
G ++ AR+VF+ MPE+N +SW+ L+ YV G +EA ++FE D L+S
Sbjct: 155 NGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSD-------WDLISW 207
Query: 202 LCACAHLGALDQGRMM--LRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
C +G + + + R++ DK ++I YA+ G + +A +F E
Sbjct: 208 NCL---MGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFD--ESP 262
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
DV W AM+ G +G + E+ F EM +E+++ +++ + A
Sbjct: 263 TRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIARE 318
Query: 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
F+S+ R + + M+ + G + +A +F MP S
Sbjct: 319 LFESMPCRNI----SSWNTMITGYGQIGDIAQARKFFDMMPQRDCVS 361
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 9/187 (4%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+ID + + + WNT++ GY++ +++++F M AGV PD +T +
Sbjct: 443 GSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVL 502
Query: 71 KASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM- 128
A + + K G +I + G G + A+++ MP +
Sbjct: 503 SACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPG 562
Query: 129 SVSWNSML-----DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+ SW ++L G + GE A VF++ P+ N + L + Y G + +A +
Sbjct: 563 AASWGALLGASRIHGNTELGE-KAAEMVFKMEPQ-NSGMYVLLSNLYAASGRWVDADKMR 620
Query: 184 EEMRDVG 190
+MRD+G
Sbjct: 621 SKMRDIG 627
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 38/137 (27%)
Query: 304 LLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LL G L A YF+ + + P S+HY CM+D L R ++ E
Sbjct: 771 LLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE------------ 818
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
G+LL HG +L E + ++ P + G I K
Sbjct: 819 -----GALLGASRIHGNTELGEKAAQMFFKMGPQNSG----------ISK---------- 853
Query: 424 AMETRGVKKYPGWSFVE 440
M GV+K PG+S+ E
Sbjct: 854 -MRDVGVQKVPGYSWFE 869
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 154/415 (37%), Positives = 236/415 (56%), Gaps = 19/415 (4%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WNT+I GY++ +++ LF + SP + + A SG + L A
Sbjct: 238 WNTMISGYAQGGGLSQARRLFDE------SPTRDVFTWTAMVSGYVQNGML------DEA 285
Query: 91 KTGY----ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
KT + E + N++I Y + ARE+F+ MP + SWN+M+ GY + G++
Sbjct: 286 KTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIA 345
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
AR+ F++MP+R+ VSW+A+I GY + G Y+EAL +F E++ G N T L CA
Sbjct: 346 QARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCA 405
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
+ AL+ G+ + + G + +L+ MY KCG+I EA F G+E + DV+ W
Sbjct: 406 DIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIE--EKDVVSW 463
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
N M+ G A HGF +++L +F M+ G+ PDEIT +G+LSAC+H GL+ +F S+ K
Sbjct: 464 NTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTK 523
Query: 327 R-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
G++P S+HY CM+D L RAG++ EA + I MP +P A+ G+LL HG +L E
Sbjct: 524 DYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGE 583
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ + +++P + G YV LSN+YA RW +A R M GV+K PG+S+VE
Sbjct: 584 KAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVE 638
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 127/269 (47%), Gaps = 33/269 (12%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G+I + K + W +I GY++S + +++++FV++ + G S + T+
Sbjct: 341 IGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCA 400
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+A EL +H Q K GY + F+ N+L+ MY CG I A + F+G+ K
Sbjct: 401 LSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDV 460
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSWN+ML GYA+ G RQ AL +FE M+
Sbjct: 461 VSWNTMLAGYARHG---FGRQ----------------------------ALTVFESMKTA 489
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKE 248
G K +E+T+V VL AC+H G LD+G M D G+ T T +ID+ + G ++E
Sbjct: 490 GVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEE 549
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
A + + Q W A++G +HG
Sbjct: 550 AQDLIRNM-PFQPGAASWGALLGASRIHG 577
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 163/347 (46%), Gaps = 32/347 (9%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYPFLAKASGRLAKREL 81
+ +P I WN I + ++ + + ++ +F M R+ VS + + +L R +K L
Sbjct: 44 VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYL-----RNSKFNL 98
Query: 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
A + Q+ E DLF N ++ Y + AR +FD MP K VSWNS+L GYA+
Sbjct: 99 ARNLFDQMP----ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQ 154
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
G ++ AR+VF+ MPE+N +SW+ L+ YV G +EA ++FE D L+S
Sbjct: 155 NGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSD-------WDLISW 207
Query: 202 LCACAHLGALDQGRMM--LRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
C +G + + + R++ DK ++I YA+ G + +A +F E
Sbjct: 208 NCL---MGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFD--ESP 262
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
DV W AM+ G +G + E+ F EM +E+++ +++ + A
Sbjct: 263 TRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIARE 318
Query: 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
F+S+ R + + M+ + G + +A +F MP S
Sbjct: 319 LFESMPCRNI----SSWNTMITGYGQIGDIAQARKFFDMMPQRDCVS 361
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 9/187 (4%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+ID + + + WNT++ GY++ +++++F M AGV PD +T +
Sbjct: 443 GSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVL 502
Query: 71 KASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM- 128
A + + K G +I + G G + A+++ MP +
Sbjct: 503 SACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPG 562
Query: 129 SVSWNSML-----DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+ SW ++L G + GE A VF++ P+ N + L + Y G + +A +
Sbjct: 563 AASWGALLGASRIHGNTELGE-KAAEMVFKMEPQ-NSGMYVLLSNLYAASGRWVDADKMR 620
Query: 184 EEMRDVG 190
+MRD+G
Sbjct: 621 SKMRDIG 627
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/426 (36%), Positives = 249/426 (58%), Gaps = 7/426 (1%)
Query: 20 LSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRL--A 77
L+ ++ W + I +++ ++ F M +GV P+H+T+ L G
Sbjct: 19 LNQSTSETTVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNHITFIALLSGCGDFPSG 78
Query: 78 KRELAVAVHAQIAKTGYE-SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
L+ +H K G + + + + ++I MY G + AR VFD M SV+WN+M+
Sbjct: 79 SETLSNLLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNTMI 138
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
DGY + G+++ A ++F+ MPER+++SW+A+I+G+VK G ++EALV F EM+ G + + V
Sbjct: 139 DGYMRSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYV 198
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
+++ L AC +LGAL G + RY++++ + + SLID+Y +CG ++ A VF +
Sbjct: 199 AIIAALNACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKM 258
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
EK V+ WN++I G A +G ESL F +MQ G PD +TF G L+AC+H GLV E
Sbjct: 259 EKRT--VVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEE 316
Query: 317 AWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
+F+++ + G+ P+ EHY C+VD SRAG++ +A + I MP++P ++GSLL C
Sbjct: 317 GLRYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLEDALKVIESMPMKPNEVVIGSLLAAC 376
Query: 376 MNHGKLD-LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
HG LAE + K L +L YV LSN+YA +W+ A R M+ G+KK P
Sbjct: 377 RTHGNNTVLAERLMKHLSDLNVKSHSNYVILSNMYAADGKWEGASQMRRKMKGLGLKKQP 436
Query: 435 GWSFVE 440
G+S +E
Sbjct: 437 GFSSIE 442
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 127/268 (47%), Gaps = 33/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + K+ + + W +I G+ K +++ F +M +GV PD++
Sbjct: 145 GQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAAL 204
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L + VH + +++++ +SNSLI +Y CG + +AREVFD M + V
Sbjct: 205 NACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVV 264
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS++ G+A G + E+LV F +M++ G
Sbjct: 265 SWNSVIVGFAANGNAH-------------------------------ESLVYFRKMQEEG 293
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
K + VT L AC+H+G +++G + M D G+S + L+D+Y++ G +++A
Sbjct: 294 FKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLEDA 353
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
L V + ++V+I +++ HG
Sbjct: 354 LKVIESMPMKPNEVVI-GSLLAACRTHG 380
>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
Length = 568
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 166/432 (38%), Positives = 238/432 (55%), Gaps = 39/432 (9%)
Query: 13 IDYSCKVLSH-LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
+ Y+ VL+ L +P F NTV+R + S P+ +++L + L PD TYP L +
Sbjct: 70 LRYAVAVLTRVLPDPDPFSLNTVLRIAASSSRPSLALALHARRL---APPDTHTYPPLLQ 126
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A RL +HA+ AK G + +F+ NSL+H+
Sbjct: 127 ACARLLSLRHGERIHAEAAKNGLATLVFVKNSLVHL------------------------ 162
Query: 132 WNSMLDGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
Y CG A +VF+ +P ERN+VSW+++++G+ G E L IF EM DV
Sbjct: 163 -------YGACGLFESAHRVFDEIPVGERNLVSWNSMLNGFAANGRPNEVLTIFREMLDV 215
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ T+VSVL A A +GAL GR + Y+ GL + +LID+YAKCG +++A
Sbjct: 216 NFMPDGFTVVSVLTASAEIGALALGRRVHVYLTKVGLVENSHVGNALIDLYAKCGGVEDA 275
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF + ++ V+ W ++I GLA++GF KE+LELF M+ + P EIT +G+L AC+
Sbjct: 276 RRVFEEMGARRT-VVSWTSLIVGLAVNGFGKEALELFGIMEREKLVPTEITMVGVLYACS 334
Query: 310 HGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV + + +F + + + P+ EH CMVD L RAG+V EAY++I MPLEP A +
Sbjct: 335 HCGLVDDGFMYFNRMKEEYNIAPRIEHLGCMVDLLGRAGKVKEAYDYILTMPLEPNAVVW 394
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+LL C H KL+L E +LVEL P H G YV LSN+YA RW + R+ M
Sbjct: 395 RTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADVHVLRKTMVKD 454
Query: 429 GVKKYPGWSFVE 440
GV+K PG S VE
Sbjct: 455 GVRKNPGRSLVE 466
>gi|225452668|ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g28640-like [Vitis vinifera]
Length = 511
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 160/449 (35%), Positives = 248/449 (55%), Gaps = 42/449 (9%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGV 59
++SF ALS G++ Y+ + S + NP +F +NT+IR YS+S P ++ F ML V
Sbjct: 42 LISFCALSNSGSLSYASLIFSQIQNPNLFAYNTLIRAYSRSSTPQLALHYFQLMLDDENV 101
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAR 118
PD T+PF+ A L +H + K G SD + +L+ Y
Sbjct: 102 GPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGVASSDRHVQTALVRFY---------- 151
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
A+C M AR++F+ +P +VV W+ L++GYV+ G E
Sbjct: 152 ---------------------AECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRGLAPE 190
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLI 237
AL F M G + +E L + L CA LGAL QG+ + Y+ K L + + T+L+
Sbjct: 191 ALNAFRNMLVSGVEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIGTALV 250
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITP 296
DMYAKCG I ++ VF G+ K +V W+AMIGG A+HG V+++++ MQ+ G+ P
Sbjct: 251 DMYAKCGCIDRSVEVFEGMTKR--NVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLRP 308
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEF 355
D + LG++ ACAH GL E + +++ R G++PK EHY+CMVD L RAGQ+ EA +
Sbjct: 309 DGVVLLGVIMACAHAGLQEEGQFLLENMEARYGILPKHEHYSCMVDLLCRAGQLDEALKL 368
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVEL----QPDHDGRYVGLSNVYAI 411
I +MP++P A++ G+LL+GC H +DLAE+ ++L+ + + DG YV LSN+Y
Sbjct: 369 IRRMPMKPRAAVWGALLSGCRTHNNVDLAELAARELLMVGNGDGTEEDGAYVQLSNIYLA 428
Query: 412 FKRWDEARTTREAMETRGVKKYPGWSFVE 440
++ ++A R + + +K PG S +E
Sbjct: 429 AQKCEDACRIRRMIGDKRIKTKPGCSLIE 457
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 149/434 (34%), Positives = 250/434 (57%), Gaps = 5/434 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFL 69
G +D + LS I WN++I G ++ N+++ F +L+ + PD +
Sbjct: 187 GRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASA 246
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD--GMPTK 127
A L K +H I +T +++ + N+LI MY G + AR + + G+
Sbjct: 247 LSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDL 306
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+++ ++L+GY K G++ ARQ+F + + +VV+W+A+I GYV+ G +A+ +F+ M
Sbjct: 307 DVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMV 366
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G + N TL ++L A + + +L+ G+ + I G +L+ + +L MYAK G+I
Sbjct: 367 SEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSIN 426
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VF+ + +++ D + W +MI LA HG +E++ELF +M +GI PD IT++G+LSA
Sbjct: 427 GARKVFNLLRQNR-DTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSA 485
Query: 308 CAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C HGGLV + +F + + P HYACMVD RAG + EAY+F+ MP+EP
Sbjct: 486 CTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVI 545
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
GSLL+ C + +DLA++ ++L+ ++P++ G Y L+NVY+ +WD+A R+ M+
Sbjct: 546 AWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMK 605
Query: 427 TRGVKKYPGWSFVE 440
RGVKK G S+V+
Sbjct: 606 ARGVKKEQGLSWVQ 619
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 159/315 (50%), Gaps = 5/315 (1%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W T+I GY++ +I +FV M++ V P T + + R + VH+ +
Sbjct: 75 WTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVV 134
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G + + ++NSL++MY GD+ A+ VFD M + + SWN+M+ + CG +++A
Sbjct: 135 KLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALA 194
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE-MRDVGSKANEVTLVSVLCACAHLG 209
FEL+ ER++VSW+++I G + G EAL F ++D K + +L S L ACA+L
Sbjct: 195 QFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLE 254
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
L G+ + Y++ + + +LI MYAK G ++ A + DV+ + A+
Sbjct: 255 KLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTAL 314
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
+ G G + + ++F ++ PD + + ++ GL +A FK++ G
Sbjct: 315 LNGYVKLGDITPARQIFNSLK----DPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGP 370
Query: 330 VPKSEHYACMVDALS 344
P S A M+ A S
Sbjct: 371 RPNSFTLAAMLSASS 385
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 30/252 (11%)
Query: 89 IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
+ K G +++ N+L+++Y G + A ++F+ MP K + SWN++L GYAK G++ A
Sbjct: 1 MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
QVF+L+P R+ VSW+ +I GY + G +++A+ IF +M + TL +VL +CA
Sbjct: 61 HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS------- 261
G+ G+ + +++ GL +P+ SL++MYAK G +K A +VF ++ +
Sbjct: 121 GSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI 180
Query: 262 ----------------------DVLIWNAMIGGLAMHGFVKESLELFTE-MQIVGITPDE 298
D++ WN+MI G HGF E+L+ F+ ++ + PD
Sbjct: 181 SLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDR 240
Query: 299 ITFLGLLSACAH 310
+ LSACA+
Sbjct: 241 FSLASALSACAN 252
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 126/276 (45%), Gaps = 38/276 (13%)
Query: 1 MLSFSAL----SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR 56
+++F+AL LG+I + ++ + L +P + W +I GY ++ N +I +F M+
Sbjct: 308 VIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVS 367
Query: 57 AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
G P+ T + AS + +HA ++G + N+L MY G I
Sbjct: 368 EGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSING 427
Query: 117 AREVFDGM-PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
AR+VF+ + + +VSW SM+ A+ G G+
Sbjct: 428 ARKVFNLLRQNRDTVSWTSMIMALAQHG-----------------------------LGE 458
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQT 234
EA+ +FE+M +G K + +T V VL AC H G ++QGR M + + TL
Sbjct: 459 --EAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYA 516
Query: 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
++D++ + G ++EA + + DV+ W +++
Sbjct: 517 CMVDLFGRAGLLQEAYKFVENMPM-EPDVIAWGSLL 551
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 176/508 (34%), Positives = 260/508 (51%), Gaps = 80/508 (15%)
Query: 9 YLGN--IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
YL N +D + KV ++ + WN++I GY + K +S+FV+ML +G+ D T
Sbjct: 89 YLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATI 148
Query: 67 --PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
F A RL L AVH+ K + + N+L+ MY CGD+ A+ VF M
Sbjct: 149 VSVFAGCADSRLIS--LGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREM 206
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE--------------------------R 158
+ VS+ SM+ GYA+ G A ++FE M E +
Sbjct: 207 SDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGK 266
Query: 159 NVVSW-------------SALIDGYVKCGDYKEALVIFEEMR--DVGS------------ 191
V W +AL+D Y KCG +EA ++F EMR D+ S
Sbjct: 267 RVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNC 326
Query: 192 ------------------KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
+E T+ VL ACA L A D+GR + Y++ G +
Sbjct: 327 YANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA 386
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
SL+DMYAKCGA+ A ++F + D++ W MI G MHGF KE++ LF +M+ G
Sbjct: 387 NSLVDMYAKCGALLLAHMLFDDIA--SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAG 444
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEA 352
I DEI+F+ LL AC+H GLV E W FF + + P EHYAC+VD L+R G + +A
Sbjct: 445 IEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKA 504
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412
Y FI MP+ P A++ G+LL GC H + LAE V +K+ EL+P++ G YV ++N+YA
Sbjct: 505 YRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEA 564
Query: 413 KRWDEARTTREAMETRGVKKYPGWSFVE 440
++W++ + R+ + RG++K PG S++E
Sbjct: 565 EKWEQVKRLRKRIGQRGLRKNPGCSWIE 592
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 160/354 (45%), Gaps = 73/354 (20%)
Query: 27 RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVH 86
+ +WN ++ +KS + + SI LF KM+ +GV D T+ ++K+ L +H
Sbjct: 8 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLH 67
Query: 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG--- 143
I K+G+ + NSL+ Y + AR+VFD M + +SWNS+++GY G
Sbjct: 68 GFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAE 127
Query: 144 --------------EMNMAR--QVFELMPERNVVSW--------------------SALI 167
E+++A VF + ++S + L+
Sbjct: 128 KGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLL 187
Query: 168 DGYVKCGDYK-------------------------------EALVIFEEMRDVGSKANEV 196
D Y KCGD EA+ +FEEM + G +
Sbjct: 188 DMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVY 247
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
T+ +VL CA LD+G+ + ++ + L + + +L+DMYAKCG+++EA +VF
Sbjct: 248 TVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFS-- 305
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFT-EMQIVGITPDEITFLGLLSACA 309
E D++ WN +IGG + + + E+L LF ++ +PDE T +L ACA
Sbjct: 306 EMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA 359
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 5/218 (2%)
Query: 163 WSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI 222
W+ L++ K GD+ ++ +F++M G + + T V + + L ++ G + +++
Sbjct: 12 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 71
Query: 223 DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKES 282
G + SL+ Y K + A VF E + DV+ WN++I G +G ++
Sbjct: 72 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFD--EMTERDVISWNSIINGYVSNGLAEKG 129
Query: 283 LELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYA-CMVD 341
L +F +M + GI D T + + + CA L+ S+G + + + + ++D
Sbjct: 130 LSVFVQMLVSGIEIDLATIVSVFAGCADSRLI-SLGRAVHSIGVKACFSREDRFCNTLLD 188
Query: 342 ALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
S+ G + A +M S S++ G G
Sbjct: 189 MYSKCGDLDSAKAVFREMSDRSVVSYT-SMIAGYAREG 225
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 153/430 (35%), Positives = 235/430 (54%), Gaps = 33/430 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + +V +S + WN +I Y + + + +++ F +L+ G+ P+ T+ +
Sbjct: 462 GSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSIL 521
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
EL VH I K G ESDL +SN+L+ M+
Sbjct: 522 NVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMF---------------------- 559
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
CG++ A+ +F MP+R++VSW+ +I G+V+ G + A F+ M++ G
Sbjct: 560 ---------VNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESG 610
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K +++T +L ACA AL +GR + + + + + T LI MY KCG+I++A
Sbjct: 611 IKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAH 670
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VFH + K +V W +MI G A HG KE+LELF +MQ G+ PD ITF+G LSACAH
Sbjct: 671 QVFHKLPK--KNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAH 728
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GL+ E + F+S+ + + P+ EHY CMVD RAG + EA EFI +M +EP + + G+
Sbjct: 729 AGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGA 788
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL C H ++LAE +K +EL P+ +G +V LSN+YA W E R+ M RGV
Sbjct: 789 LLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGV 848
Query: 431 KKYPGWSFVE 440
K PG S++E
Sbjct: 849 VKKPGQSWIE 858
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 123/482 (25%), Positives = 207/482 (42%), Gaps = 78/482 (16%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN + ++ + ++ WN ++ GY + ++ L +M++ V PD T+ +
Sbjct: 159 GNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSML 218
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + ++ I K G+++DLF+ +LI+M+ CGDI A +VFD +PT+ V
Sbjct: 219 NACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLV 278
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNV------------------------------ 160
+W SM+ G A+ G A +F+ M E V
Sbjct: 279 TWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARM 338
Query: 161 --VSW-------SALIDGYVKCGDYKEALVIFE--------------------------- 184
V W +A++ Y KCG ++AL +F+
Sbjct: 339 KEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAF 398
Query: 185 ----EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+M + G + N VT +S+L AC+ AL +G+ + ++I+ G ++T+L+ MY
Sbjct: 399 LFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMY 458
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG++K+A VF + K +V+ WNAMI H +L F + GI P+ T
Sbjct: 459 AKCGSLKDAHRVFEKISKQ--NVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSST 516
Query: 301 FLGLLSAC-AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F +L+ C + L + W F + K G+ +V G + A M
Sbjct: 517 FTSILNVCKSSDSLELGKWVHFLIM-KAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDM 575
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRYVGLSNVYAIFKRWDE 417
P S +++ G + HGK +A K + E ++PD + GL N A + E
Sbjct: 576 PKRDLVS-WNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKI-TFTGLLNACASPEALTE 633
Query: 418 AR 419
R
Sbjct: 634 GR 635
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/368 (26%), Positives = 174/368 (47%), Gaps = 36/368 (9%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK 91
N V+ SK+ N+++ + ++ + + TY L + + ++ I K
Sbjct: 79 NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138
Query: 92 TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQV 151
+G + D+F+ N+LI+MY CG+ + A+++FD M K SWN +L G
Sbjct: 139 SGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG------------- 185
Query: 152 FELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGAL 211
YV+ G Y+EA + E+M K ++ T VS+L ACA +
Sbjct: 186 ------------------YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNV 227
Query: 212 DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIG 271
D+GR + ++ G L + T+LI+M+ KCG I +A VF + D++ W +MI
Sbjct: 228 DKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTR--DLVTWTSMIT 285
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
GLA HG K++ LF M+ G+ PD++ F+ LL AC H + + + + G
Sbjct: 286 GLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDT 345
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL 391
+ ++ ++ G + +A E + S +++ G HG++D A + K+
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWT-AMIAGFAQHGRIDEAFLFFNKM 404
Query: 392 VE--LQPD 397
+E ++P+
Sbjct: 405 IESGIEPN 412
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 166/503 (33%), Positives = 262/503 (52%), Gaps = 66/503 (13%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+ A + N+ Y+ + + P + WN +I+ Y +++ N +I+LF K+L
Sbjct: 53 LLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLL-CDFV 111
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHM------------- 107
PD T P + K RL + +H + K G+ D F+ +SL+ M
Sbjct: 112 PDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKV 171
Query: 108 ------------------YGSCGDIVYA-------------------------------R 118
Y CG+I A R
Sbjct: 172 FDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAAR 231
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
+VFD MP + SVSWN+M++GY K G+ N A+++F+ MPER++V+W+++I GY + + +
Sbjct: 232 DVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTK 291
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
AL +FE M N T++ + A + + +L GR + Y++ G L T LI+
Sbjct: 292 ALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIE 351
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MY+KCG++K AL VF + K + + W ++I GL MHG V+++LELF EM G+ P
Sbjct: 352 MYSKCGSVKSALRVFRSIPKKK--LGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHA 409
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
ITF+G+L+AC+H G +A +FK + G+ P EHY C++D L RAG + EA + I
Sbjct: 410 ITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIE 469
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
+MP++ + SLL+G HG + + E + L++L PD G YV LSN+YA W++
Sbjct: 470 RMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEK 529
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
R RE M+ +G+KK PG S +E
Sbjct: 530 VRQVREMMKKKGMKKDPGCSSIE 552
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/396 (39%), Positives = 222/396 (56%), Gaps = 36/396 (9%)
Query: 48 ISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHM 107
+ + MLR V P ++ + ++ + +L A H QI K G+E D+ + L
Sbjct: 15 LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGL--- 71
Query: 108 YGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNV--VSWSA 165
LD YAK G + AR +F+ M ERN V+W+
Sbjct: 72 ----------------------------LDFYAKHGYVEEARNLFDNMTERNSNSVTWNT 103
Query: 166 LIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG 225
+I YV+CG++ A+ +F++M+ K EVT+VS+L ACAHLGALD G + Y+ K
Sbjct: 104 MISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKR 163
Query: 226 LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLEL 285
L + + L +LIDMY KCGA++ A+ VFHG+ + ++ WN++I GL M+G +E++
Sbjct: 164 LKIDVVLGNALIDMYCKCGALEAAIDVFHGLSR--KNIFCWNSIIVGLGMNGRGEEAIAA 221
Query: 286 FTEMQIVGITPDEITFLGLLSACAHGGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALS 344
F M+ GI PD +TF+G+LS C+H GL+ YF + LG G+ P EHY CMVD L
Sbjct: 222 FIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLG 281
Query: 345 RAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVG 404
RAG + EA E I MP++P + +LGSLL C H L E V ++L+EL P G YV
Sbjct: 282 RAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVF 341
Query: 405 LSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
LSN+YA RWD+ T R+ M RGV K PG S +E
Sbjct: 342 LSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIE 377
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 32/227 (14%)
Query: 25 NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVA 84
N WNT+I Y + +IS+F +M V P +T L A L ++
Sbjct: 95 NSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEW 154
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+H I + D+ + N+LI MY CG + A +VF G+ K WNS++ G
Sbjct: 155 IHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLG---- 210
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
MN G +EA+ F M G K + VT V +L
Sbjct: 211 MN---------------------------GRGEEAIAAFIVMEKEGIKPDGVTFVGILSG 243
Query: 205 CAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKEAL 250
C+H G L G+ M+ GL + ++D+ + G +KEAL
Sbjct: 244 CSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEAL 290
Score = 41.2 bits (95), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + V LS IF WN++I G + ++I+ F+ M + G+ PD +T+ +
Sbjct: 182 GALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGIL 241
Query: 71 KA---SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
SG L+ + + + G E + ++ + G G + A E+ MP K
Sbjct: 242 SGCSHSGLLSAGQRYFS--EMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMK 299
Query: 128 MSVSWNSMLDGY----------AKCGEMNMARQVFELMP 156
NSM+ G K GE + +Q+ EL P
Sbjct: 300 P----NSMVLGSLLRACQIHKDTKLGE-QVTQQLLELDP 333
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 157/431 (36%), Positives = 239/431 (55%), Gaps = 34/431 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
++ Y+ + +S P I +N++ RGYS+S NP + +LFV++L + PD+ T+P L
Sbjct: 79 SSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLL 138
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA E +H K G + ++++ +LI+MY C D+
Sbjct: 139 KACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDV---------------- 182
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+ AR VF+ + E VV ++A+I GY + EAL +F EM+
Sbjct: 183 ---------------DAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKN 227
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K NE+TL+SVL +CA LG+LD G+ + Y G + + T+LIDM+AKCG++ +A+
Sbjct: 228 LKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAV 287
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F + D W+AMI A HG + S+ +F M+ + PDEITFLGLL+AC+H
Sbjct: 288 SIFENMR--YKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSH 345
Query: 311 GGLVMEAWYFFK-SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E +F + + G+VP +HY MVD L RAG + +AYEFI ++P+ PT +
Sbjct: 346 TGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWR 405
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
LL C +H L+LAE V ++++EL H G YV LSN+YA K+W+ + R+ M+ R
Sbjct: 406 ILLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRK 465
Query: 430 VKKYPGWSFVE 440
K PG S +E
Sbjct: 466 AVKVPGCSSIE 476
>gi|357132191|ref|XP_003567715.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Brachypodium distachyon]
Length = 656
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 157/435 (36%), Positives = 242/435 (55%), Gaps = 10/435 (2%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-----RAGVSPDHLT 65
G ID + ++ + + W +I GY ++ ++++ +V M+ R V+ L
Sbjct: 224 GAIDMAAEMFERIPERDVVSWLVMIDGYIRADCISEALRTYVAMMAEVDTRGNVA---LL 280
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
F KA R A +H I K G+++ LF+ +LIH YGSC + A+ F
Sbjct: 281 VDF-QKACARHAAVLEGQQLHTVILKDGFDTHLFVQATLIHFYGSCDLLDLAKMQFKLSD 339
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
SWN+ + G + M+ ARQ+F+ MPE++ +SWS L+ GYV+ G AL +F
Sbjct: 340 KSHIASWNAFMAGIVRKNLMHEARQLFDNMPEKDTISWSTLLSGYVQSGHSDMALQLFCL 399
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M G K N +TL S L A A+ G L+QGR + Y+I K + LT L LIDMYAKCG+
Sbjct: 400 MLGAGVKPNHITLASTLSAVANSGTLEQGRWIHDYIISKSIHLTDNLIAGLIDMYAKCGS 459
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
+ +A+++F+ V++ S + WNAMI LA+HG SLELF+++Q I P+ IT++G+L
Sbjct: 460 VADAVLLFNHVKEKLSSLSPWNAMICSLAIHGHAHMSLELFSQLQSSNIKPNSITYIGVL 519
Query: 306 SACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
+AC H G+V E + F+S+ + G+ P +HY CMVD L RAG + EA I MP++
Sbjct: 520 NACCHAGMVTEGKHHFESMRREYGIPPTIKHYGCMVDLLGRAGYLEEAERLIKTMPVKSD 579
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
+ GS+L +HG + L E ++L +L P+H V L N+YA RW+ R+
Sbjct: 580 VVIWGSILAAARSHGNVALGEKAAEELAKLDPNHGASKVALCNIYADAGRWNNVSVVRKE 639
Query: 425 METRGVKKYPGWSFV 439
+ +++ G S V
Sbjct: 640 LRYENLERLSGSSGV 654
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 105/415 (25%), Positives = 192/415 (46%), Gaps = 35/415 (8%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
+AL+ G++D++ ++L+ + + TV+ +++ + ++++F ML V P+
Sbjct: 85 LAALARGGHLDHAKRMLAEMPQRDTVSFTTVLTALARAGHAEDAMAVFRGMLAQDVPPNE 144
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T + A R VH + G + + ++ +L+H Y + + +AR VF+
Sbjct: 145 VTLAGVITALARDWAPAPLGMVHGVSVQRGLDGFVIVATNLVHAYAAAAQVGFARAVFEW 204
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
MP K +V+WN+ML+GY K G ++MA ++FE +PER+VVSW +IDGY++ EAL +
Sbjct: 205 MPDKNTVTWNAMLNGYVKAGAIDMAAEMFERIPERDVVSWLVMIDGYIRADCISEALRTY 264
Query: 184 -EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
M +V ++ N LV ACA A+ +G+ + ++ G L +Q +LI Y
Sbjct: 265 VAMMAEVDTRGNVALLVDFQKACARHAAVLEGQQLHTVILKDGFDTHLFVQATLIHFYGS 324
Query: 243 CGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAMIGGL 273
C + A + F +K + D + W+ ++ G
Sbjct: 325 CDLLDLAKMQFKLSDKSHIASWNAFMAGIVRKNLMHEARQLFDNMPEKDTISWSTLLSGY 384
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS 333
G +L+LF M G+ P+ IT LSA A+ G + + + + + +
Sbjct: 385 VQSGHSDMALQLFCLMLGAGVKPNHITLASTLSAVANSGTLEQGRWIHDYIISKSIHLTD 444
Query: 334 EHYACMVDALSRAGQVTEAYEFICQM-----PLEPTASMLGSLLTGCMNHGKLDL 383
A ++D ++ G V +A + L P +M+ SL H L+L
Sbjct: 445 NLIAGLIDMYAKCGSVADAVLLFNHVKEKLSSLSPWNAMICSLAIHGHAHMSLEL 499
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 109/225 (48%), Gaps = 11/225 (4%)
Query: 71 KASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYG---SCGDIVYAREVFDGMPT 126
K+ RL E +HA AK+G S+LF+ NSL+ Y S A +FD +P
Sbjct: 17 KSGARLRHGE---QLHALAAKSGLLVSNLFVRNSLLAFYSRLPSSHAPALAHHLFDEIPL 73
Query: 127 KM--SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ + + N++L A+ G ++ A+++ MP+R+ VS++ ++ + G ++A+ +F
Sbjct: 74 ALRDAAAHNTLLAALARGGHLDHAKRMLAEMPQRDTVSFTTVLTALARAGHAEDAMAVFR 133
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M NEVTL V+ A A A M+ + +GL + + T+L+ YA
Sbjct: 134 GMLAQDVPPNEVTLAGVITALARDWAPAPLGMVHGVSVQRGLDGFVIVATNLVHAYAAAA 193
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
+ A VF + + + WNAM+ G G + + E+F +
Sbjct: 194 QVGFARAVFEWMP--DKNTVTWNAMLNGYVKAGAIDMAAEMFERI 236
>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
gi|194690792|gb|ACF79480.1| unknown [Zea mays]
Length = 617
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 148/423 (34%), Positives = 236/423 (55%), Gaps = 19/423 (4%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK--------------ASGRLA 77
N IR ++ P + + F + + PDH + FL + S +
Sbjct: 72 NAFIRALARGPRPCLAFAAFRDL---PLPPDHYSLNFLVRAATALVASAAEEKHVSAEVN 128
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
R AV+ H + G+ +D + + ++ MY + GD+ +R F + V +M+
Sbjct: 129 ARLQAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVA 188
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
A G+++ AR +F+ MP+R+ V+WSA+I GY+ G +EAL++F+EM G+ E T
Sbjct: 189 ALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEAT 248
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
LVSVL ACA +G LD+G+ + Y+ +G+ +++ L T+L+DMY+KCGA+ A+ VF +
Sbjct: 249 LVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMA 308
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+ +V W + + GLAM+G E L+LF M+ GI P+ ++F+ +L C+ GLV E
Sbjct: 309 --ERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEG 366
Query: 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
F S+ K G+ P EHY CMVD RAG++ +A FI MP+EP + G+LL
Sbjct: 367 RACFDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRI 426
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
H +DL + KL+ ++ ++D +V LSN+YA + W R M+ +GVKK PGWS
Sbjct: 427 HNSVDLGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWS 486
Query: 438 FVE 440
+E
Sbjct: 487 TIE 489
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 116/277 (41%), Gaps = 36/277 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+AL+ G++D + + + W+ +I GY +++ LF +ML AG +
Sbjct: 188 AALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEA 247
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T + A ++ + VH + G + + + +L+ MY CG +V A EVF+ M
Sbjct: 248 TLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESM 307
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ +W S + G A MN G E L +F+
Sbjct: 308 AERNVYTWTSAVSGLA----MN---------------------------GMGTECLQLFK 336
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M G + N V+ V+VL C+ G +D+GR M G+ ++D+Y + G
Sbjct: 337 RMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDKYGVDPWPEHYGCMVDLYGRAG 396
Query: 245 AIKEALIVFHG--VEKHQSDVLIWNAMIGGLAMHGFV 279
+ +A+ + +E H+ +W A++ +H V
Sbjct: 397 RLDDAISFINDMPMEPHEG---VWGALLNASRIHNSV 430
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 166/519 (31%), Positives = 260/519 (50%), Gaps = 81/519 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ F S G+I+ + V + P ++ WN++IRG+ + NP S+ L+ +++ G S
Sbjct: 31 LIDFCVDSXFGDINNADLVFRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYS 90
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PDH T+PF+ KA +A ++ +H I K+G+E+D + + L+HMY SC D+ +V
Sbjct: 91 PDHFTFPFVLKACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKV 150
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELM------------------------- 155
FD +P V+W ++ GY + A +VF+ M
Sbjct: 151 FDNIPIWNVVAWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXCARSRDF 210
Query: 156 ---------------------PERNVVSWSALIDGYVKCGDY------------------ 176
N++ +A+++ Y KCG +
Sbjct: 211 DTGQWVHQHIRKAGYDPFMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSW 270
Query: 177 -------------KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
KEAL +F +M G ++ T +SVL CAHL AL G+ + Y+
Sbjct: 271 NSMINAYNQYERHKEALDLFFDMWTSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXK 330
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
G+ + L T+L+DMYAK G + A +F ++K DV++W +MI GLAMHG E+L
Sbjct: 331 TGIGTDISLATALLDMYAKTGGLGSAQKIFSSLQKR--DVVMWTSMINGLAMHGDGNEAL 388
Query: 284 ELFTEM-QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVD 341
+F M + + PD IT++G+L AC+H GLV EA F+ + + +VP EHY CMVD
Sbjct: 389 GMFQTMHEDSSLVPDHITYIGVLFACSHVGLVEEAKKHFRLMTEMYSIVPGREHYGCMVD 448
Query: 342 ALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR 401
LSR+G EA + M ++P S+ G+LL GC H L +A V ++L EL+ G
Sbjct: 449 LLSRSGHFGEAERLMETMAIQPNISIXGALLYGCQIHENLXVANQVKERLTELESCQSGA 508
Query: 402 YVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+V LSN+YA RW++ TR+ M+ + + K G S VE
Sbjct: 509 HVLLSNIYAKAGRWEDVNGTRKVMKHKRITKIIGHSSVE 547
>gi|326492712|dbj|BAJ90212.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506700|dbj|BAJ91391.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 520
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/432 (36%), Positives = 234/432 (54%), Gaps = 10/432 (2%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y+ +++ + P F WNT IR S P+ +++LFV MLR+ P+ T+P L A
Sbjct: 83 YAARIVRYHPRPNSFMWNTAIRALSDGPGPDAAVALFVDMLRSPTPPERRTFPSLFAAYA 142
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
RL + + A+H + K G D + N+ I MY S G A +F V+ NS
Sbjct: 143 RLGRADDGAALHGMVLKLGLAGDAYTRNTTIAMYASSGRADEALALFGQCQVFDVVACNS 202
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
+ ++ G ++ AR VF+ MP R V +WSA++ Y + + +A+ +F M+ G + N
Sbjct: 203 AIVALSRAGRVDEARAVFDGMPSRTVATWSAMVSAYSRAARFHDAVDLFSAMQVDGVEPN 262
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF- 253
LVSVL CA LGAL+QG + Y+ + + + + +L+DMY KCG+I +A VF
Sbjct: 263 ANVLVSVLGCCASLGALEQGAWVHAYIDKQDVGMNALVVIALVDMYCKCGSIHKARQVFD 322
Query: 254 ----HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
G+ K S WNAM+ GLA HG +E+L LF+E++ G+ PD +TF+ +L A
Sbjct: 323 TSRSQGLAKLSS----WNAMMLGLAAHGQCQEALALFSELESYGLRPDNVTFIAMLMAYG 378
Query: 310 HGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H G+ EA F S+ + G+ P EHY C+VDAL+RAG++ EA + I MP++P A++
Sbjct: 379 HSGMADEAKALFASMAREYGVTPGIEHYGCLVDALARAGRLREAEDTIRAMPMKPDAAIW 438
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL+GC HG + + VE P G YV ++V A R M
Sbjct: 439 GALLSGCRLHGDAEAGARAARGAVECDPRDSGAYVLAASVLARDGEVGRGLGVRGKMREE 498
Query: 429 GVKKYPGWSFVE 440
GV K PG S +E
Sbjct: 499 GVAKVPGCSMIE 510
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 118/273 (43%), Gaps = 30/273 (10%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
ALS G +D + V + + + W+ ++ YS++ + ++ LF M GV P+
Sbjct: 206 ALSRAGRVDEARAVFDGMPSRTVATWSAMVSAYSRAARFHDAVDLFSAMQVDGVEPNANV 265
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ L E VHA I K + + +L+ MY CG I AR+VFD
Sbjct: 266 LVSVLGCCASLGALEQGAWVHAYIDKQDVGMNALVVIALVDMYCKCGSIHKARQVFD--- 322
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
S G AK + SW+A++ G G +EAL +F E
Sbjct: 323 -------TSRSQGLAK------------------LSSWNAMMLGLAAHGQCQEALALFSE 357
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCG 244
+ G + + VT +++L A H G D+ + + M + G++ + L+D A+ G
Sbjct: 358 LESYGLRPDNVTFIAMLMAYGHSGMADEAKALFASMAREYGVTPGIEHYGCLVDALARAG 417
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
++EA + + D IW A++ G +HG
Sbjct: 418 RLREAEDTIRAMPM-KPDAAIWGALLSGCRLHG 449
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 168/493 (34%), Positives = 251/493 (50%), Gaps = 77/493 (15%)
Query: 16 SCKVLSHLSNPR--IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA- 72
S ++ + NP+ F NT++R Y+ + P+ ++SLF M + D TY FL KA
Sbjct: 109 SRRIFASFPNPQATTFLPNTLLRAYALNALPHAAVSLFSAMPQR----DSFTYSFLIKAL 164
Query: 73 --SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG------------------ 112
SG R AVH+ + K G D ++ N+LI Y G
Sbjct: 165 SSSGLTPLR----AVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTV 220
Query: 113 -------------DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
++ AR +FD MP K +VSWN++LDGY K G+M A ++F+ MPERN
Sbjct: 221 SWNSAMAAMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDAFELFQCMPERN 280
Query: 160 VVSWSALIDGYVKCGDYKEALVIFE-------------------------------EMRD 188
VVSWS ++ GY K GD + A VIF+ +M++
Sbjct: 281 VVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKE 340
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
+ + +VS+L ACA G+L G+ + RY+ + L + + ++IDM+ KCG +
Sbjct: 341 AAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNR 400
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A VF E + D + WN +IGG AMHG ++L+ F +M++ G PD +T + +LSAC
Sbjct: 401 ADYVF-DTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSAC 459
Query: 309 AHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
H G V E F ++ + G+VP+ EHY CM+D L R G + EA I MP +P +
Sbjct: 460 THMGFVEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVI 519
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
GSLL+ C H ++ AEI +L +LQP + G Y LSN+YA +W + R M+
Sbjct: 520 WGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKG 579
Query: 428 RGVKKYPGWSFVE 440
G +K G S++E
Sbjct: 580 TGSQKSAGSSWIE 592
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 116/272 (42%), Gaps = 34/272 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I+ + + + + W ++ +++ ++ LF +M A V D +
Sbjct: 295 GDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSIL 354
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG-MPTKMS 129
A L +H + + N++I M+ CG + A VFD + K S
Sbjct: 355 AACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDS 414
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSWN+++ G+A G GD +AL F +M+
Sbjct: 415 VSWNTIIGGFAMHGH-----------------------------GD--KALDFFAQMKLQ 443
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G + + VT+++VL AC H+G +++GR M D G+ + +ID+ + G I+E
Sbjct: 444 GFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEE 503
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
A+ + + ++V IW +++ +H V+
Sbjct: 504 AVGLIKSMPWDPNEV-IWGSLLSACRLHKNVE 534
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/434 (35%), Positives = 243/434 (55%), Gaps = 27/434 (6%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G++ + +V S + + WN++I Y ++ ++++ +FV+M+ +G+ PD +T
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A L + + +HA++ KT + DL + N+L+ MY C + AR VFD M
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ VS SM+ GYA+ + AR +F M +RNVVSW+ALI GY + G+ +EAL +F +
Sbjct: 313 RNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLL 372
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ T ++L + +G SLIDMY KCG+I
Sbjct: 373 KRESIWPTHYTFGNLLKSDIFVG------------------------NSLIDMYMKCGSI 408
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
++ VF ++ + D + WNA+I G A +G+ E+L++F +M + G PD +T +G+L
Sbjct: 409 EDGSRVFEKMK--ERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLC 466
Query: 307 ACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
AC+H GLV E ++F S+ + G++P +HY CMVD L RAG + EA I MP+ P A
Sbjct: 467 ACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAV 526
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ GSLL C HG +++ + +KL+E+ P + G YV LSN+YA RW + R+ M
Sbjct: 527 VWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMR 586
Query: 427 TRGVKKYPGWSFVE 440
+GV K PG S++E
Sbjct: 587 QQGVTKQPGCSWIE 600
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 163/314 (51%), Gaps = 12/314 (3%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VHA+I T + ++FI N LI +YG C + AR++FD MP + + +WNS++ K G
Sbjct: 37 VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGF 96
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
++ A ++F MPE + SW++++ G+ + ++E+L F +M NE + S L A
Sbjct: 97 LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
CA L L+ G + + S + + ++LIDMY+KCG++ A VF G+ + +++
Sbjct: 157 CAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGM--IERNLV 214
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA-----HGGLVMEAWY 319
WN++I +G E+LE+F M G+ PDE+T ++SACA GL + A
Sbjct: 215 TWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARV 274
Query: 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+ + +V + +VD ++ +V EA +M + S S+++G
Sbjct: 275 VKTNKFRDDLVLGN----ALVDMYAKCSKVNEARRVFDRMSIRNVVSET-SMVSGYARAA 329
Query: 380 KLDLAEIVGKKLVE 393
+ A + K+ +
Sbjct: 330 SVKAARFMFSKMTQ 343
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 111/306 (36%), Gaps = 73/306 (23%)
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
N +L +C + R++ ++ S+ + +Q LID+Y KC + +A +F
Sbjct: 14 NSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLF 73
Query: 254 HGVEKHQS-----------------------------DVLIWNAMIGGLAMHGFVKESLE 284
+ + + D WN+M+ G A H +ESLE
Sbjct: 74 DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLE 133
Query: 285 LFTEMQIVGITPDEITFLGLLSACA-----------HG---------------------- 311
F +M +E +F LSACA H
Sbjct: 134 YFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYS 193
Query: 312 --GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM---PLEPTAS 366
G V A F + +R +V + ++ + G +EA E +M LEP
Sbjct: 194 KCGSVACAEEVFSGMIERNLVT----WNSLITCYEQNGPASEALEVFVRMMDSGLEPDEV 249
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVG--LSNVYAIFKRWDEARTTREA 424
L S+++ C + L + ++V+ D +G L ++YA + +EAR +
Sbjct: 250 TLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDR 309
Query: 425 METRGV 430
M R V
Sbjct: 310 MSIRNV 315
>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
Length = 1157
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 164/445 (36%), Positives = 244/445 (54%), Gaps = 38/445 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ FS+LS ++ Y+ +L H +P WN +IRGY+ S P ++ ++ M G+
Sbjct: 702 LIKFSSLSPSKDLSYAQSILDHSVHPVPLPWNILIRGYADSNTPKDALFVYRNMRNEGIR 761
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P+ LT+PFL KA + VH ++ K G + D++++N+L++ YGSC I+ A +V
Sbjct: 762 PNSLTFPFLLKACAACFATKEGKQVHVEVIKYGLDCDVYVNNNLVNFYGSCKKILDACKV 821
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD MP + VSWN A+I V+ EA+
Sbjct: 822 FDEMPERTVVSWN-------------------------------AVITSCVESLKLGEAI 850
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
F +MRD G + + T+V +L CA +G L GR + +I++GL L L T+L+DMY
Sbjct: 851 RYFLKMRDFGFEPDGTTMVLMLVICAEMGNLGLGRWIHSQVIERGLVLNYQLGTALVDMY 910
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEI 299
AK GA+ A +VF ++ + +V W+AMI GLA HGF KE LELF +M I P+ +
Sbjct: 911 AKSGAVGYAKLVFDRMK--EKNVWTWSAMILGLAQHGFAKEGLELFLDMMRSSLIHPNYV 968
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
TFLG+L AC+H GLV + + +F +G G+ P HY MVD L RAG + EAY FI +
Sbjct: 969 TFLGVLCACSHAGLVSDGFRYFHEMGHTYGIKPMMVHYGAMVDILGRAGLLKEAYNFITK 1028
Query: 359 MPLEPTASMLGSLLTGCMNHGKLD---LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
MP +P + +LL+ C H D +A V K+L+EL+P G +V ++N+YA W
Sbjct: 1029 MPFQPDPIVWRTLLSACSIHDVKDSTGVAYKVRKRLLELEPRRSGNFVMVANMYADAGMW 1088
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
++A R M G+KK G S VE
Sbjct: 1089 EKAAKVRRVMRDGGLKKKAGESCVE 1113
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/430 (35%), Positives = 235/430 (54%), Gaps = 33/430 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + +V +S + WN +I Y + + + +++ F +L+ G+ P+ T+ +
Sbjct: 462 GSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSIL 521
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
EL VH I K G ESDL +SN+L+ M+
Sbjct: 522 NVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMF---------------------- 559
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
CG++ A+ +F MP+R++VSW+ +I G+V+ G + A F+ M++ G
Sbjct: 560 ---------VNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESG 610
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K +++T +L ACA AL +GR + + + + + T LI MY KCG+I++A
Sbjct: 611 IKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAH 670
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VFH + K +V W +MI G A HG KE+LELF +MQ G+ PD ITF+G LSACAH
Sbjct: 671 QVFHKLPK--KNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAH 728
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GL+ E + F+S+ + + P+ EHY CMVD RAG + EA EFI +M +EP + + G+
Sbjct: 729 AGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGA 788
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL C H ++LAE +K +EL P+ +G +V LSN+YA W E R+ M RGV
Sbjct: 789 LLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGV 848
Query: 431 KKYPGWSFVE 440
K PG S++E
Sbjct: 849 VKKPGQSWIE 858
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 123/482 (25%), Positives = 207/482 (42%), Gaps = 78/482 (16%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN + ++ + ++ WN ++ GY + ++ L +M++ V PD T+ +
Sbjct: 159 GNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSML 218
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + ++ I K G+++DLF+ +LI+M+ CGDI A +VFD +PT+ V
Sbjct: 219 NACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLV 278
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNV------------------------------ 160
+W SM+ G A+ G A +F+ M E V
Sbjct: 279 TWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARM 338
Query: 161 --VSW-------SALIDGYVKCGDYKEALVIFE--------------------------- 184
V W +A++ Y KCG ++AL +F+
Sbjct: 339 KEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAF 398
Query: 185 ----EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+M + G + N VT +S+L AC+ AL +G+ + ++I+ G ++T+L+ MY
Sbjct: 399 LFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMY 458
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG++K+A VF + K +V+ WNAMI H +L F + GI P+ T
Sbjct: 459 AKCGSLKDAHRVFEKISKQ--NVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSST 516
Query: 301 FLGLLSAC-AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F +L+ C + L + W F + K G+ +V G + A M
Sbjct: 517 FTSILNVCKSSDSLELGKWVHFLIM-KAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDM 575
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRYVGLSNVYAIFKRWDE 417
P S +++ G + HGK +A K + E ++PD + GL N A + E
Sbjct: 576 PKRDLVS-WNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKI-TFTGLLNACASPEALTE 633
Query: 418 AR 419
R
Sbjct: 634 GR 635
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/368 (26%), Positives = 174/368 (47%), Gaps = 36/368 (9%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK 91
N V+ SK+ N+++ + ++ + + TY L + + ++ I K
Sbjct: 79 NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138
Query: 92 TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQV 151
+G + D+F+ N+LI+MY CG+ + A+++FD M K SWN +L G
Sbjct: 139 SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG------------- 185
Query: 152 FELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGAL 211
YV+ G Y+EA + E+M K ++ T VS+L ACA +
Sbjct: 186 ------------------YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNV 227
Query: 212 DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIG 271
D+GR + ++ G L + T+LI+M+ KCG I +A VF + D++ W +MI
Sbjct: 228 DKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTR--DLVTWTSMIT 285
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
GLA HG K++ LF M+ G+ PD++ F+ LL AC H + + + + G
Sbjct: 286 GLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDT 345
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL 391
+ ++ ++ G + +A E + S +++ G HG++D A + K+
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWT-AMIAGFAQHGRIDEAFLFFNKM 404
Query: 392 VE--LQPD 397
+E ++P+
Sbjct: 405 IESGIEPN 412
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 154/426 (36%), Positives = 241/426 (56%), Gaps = 36/426 (8%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+VL + + W +I GYS+ ++++ LFV+ML +G +P+ T+ + + +
Sbjct: 533 RVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSS 592
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+L +H+ + KT +ES +F+ +SL+ MY G I AR VFDG+P + VS +++
Sbjct: 593 GFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIIS 652
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
GYA+ G +D +EAL +F ++ G ++N VT
Sbjct: 653 GYAQLG-----------------------LD--------EEALDLFRRLQREGMRSNYVT 681
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
SVL A + L ALD GR + +++ L + LQ SLIDMY+KCG++ + +F +
Sbjct: 682 YASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP 741
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACAHGGLVME 316
+ V+ WNAM+ G + HG +E++ELF M+ + PD +TFL +LS C+HGG+
Sbjct: 742 --ERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDR 799
Query: 317 AWYFFKSL--GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
F + K G P+ EHY C+VD RAG+V EA+EFI +MP EPTA++ GSLL
Sbjct: 800 GLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGA 859
Query: 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
C H + + E V ++L+E++ ++ G YV LSN+YA RWD+ RT RE M+ + V K P
Sbjct: 860 CRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEP 919
Query: 435 GWSFVE 440
G S++E
Sbjct: 920 GRSWIE 925
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 111/390 (28%), Positives = 175/390 (44%), Gaps = 61/390 (15%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPN-----KSISLFVKMLRAGVSPDHLTY----PF 68
+VLS +SNP F ++ + +P+ + L +L G+ + +
Sbjct: 426 QVLSSISNP--FSRQRILLSTFPANSPDLKTLCSNRQLKEALLEMGIQGLEVEFQGYDSV 483
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
L + + A RE VHA + KT YE +++ LI +Y C
Sbjct: 484 LTECISQTAIRE-GQRVHAHMIKTCYEPPVYLRTRLIVLYNKC----------------- 525
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
+C + AR+V + MPERNVVSW+A+I GY + G EAL +F EM
Sbjct: 526 ------------RC--LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLM 571
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G+ NE T +VL +C GR + +I + + +SL+DMYAK G I E
Sbjct: 572 SGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICE 631
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A VF G+ + DV+ A+I G A G +E+L+LF +Q G+ + +T+ +L+A
Sbjct: 632 ARRVFDGLP--ERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTAL 689
Query: 309 AHGGLVMEAWYFFKSLGKRGMVPKSEHYAC----MVDALSRAGQVTEAYEFICQMPLEPT 364
+ G ++ S R +P Y ++D S+ G +T + MP E T
Sbjct: 690 S-GLAALDHGRQVHSHVLRAKLP---FYVVLQNSLIDMYSKCGSLTYSRRIFDSMP-ERT 744
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVEL 394
++L G HG +G++ VEL
Sbjct: 745 VISWNAMLVGYSKHG-------LGREAVEL 767
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 126/270 (46%), Gaps = 37/270 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I + +V L + +I GY++ +++ LF ++ R G+ +++TY +
Sbjct: 627 GKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVL 686
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A LA + VH+ + + + + NSLI MY CG + Y+R +FD MP + +
Sbjct: 687 TALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVI 746
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+ML GY+K G A ++F+LM E N V
Sbjct: 747 SWNAMLVGYSKHGLGREAVELFKLMKEENKV----------------------------- 777
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK--GLSLTLPLQTSLIDMYAKCGAIKE 248
K + VT ++VL C+H G D+G + M+++ G + ++D++ + G ++E
Sbjct: 778 -KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEE 836
Query: 249 ALIVFHGVEK--HQSDVLIWNAMIGGLAMH 276
A F ++K + IW +++G +H
Sbjct: 837 A---FEFIKKMPFEPTAAIWGSLLGACRVH 863
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 15/192 (7%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTY 66
S G++ YS ++ + + WN ++ GYSK +++ LF M V PD +T
Sbjct: 725 SKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVT- 783
Query: 67 PFLAKAS----GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
FLA S G + R L + K G+E ++ ++ ++G G + A E
Sbjct: 784 -FLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIK 842
Query: 123 GMPTKMSVS-WNSMLDG-----YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
MP + + + W S+L GE +AR++ E+ E N ++ L + Y G +
Sbjct: 843 KMPFEPTAAIWGSLLGACRVHQNVHIGEF-VARRLLEIESE-NAGNYVILSNLYASAGRW 900
Query: 177 KEALVIFEEMRD 188
+ + E M++
Sbjct: 901 DDVRTVRELMKE 912
>gi|225454898|ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Vitis vinifera]
Length = 744
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 245/470 (52%), Gaps = 35/470 (7%)
Query: 2 LSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP 61
L S S GN + + + + N I W ++I YS+ + I +F +ML +G+ P
Sbjct: 278 LLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYP 337
Query: 62 DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121
D + + + + A A H I + Y D + N+L+ MY G + A + F
Sbjct: 338 DGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFF 397
Query: 122 DGMPTKMSVSWN--------------------------------SMLDGYAKCGEMNMAR 149
+ + +WN S++D Y K G + +AR
Sbjct: 398 GRVNEQNFEAWNLMVSGYGATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIAR 457
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
++F +P R++V+W+ LI Y CG + EAL ++++M K N TLVSVL AC+HL
Sbjct: 458 RIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVSVLSACSHLA 516
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
+L++G + Y+ L + T+LIDMYAKCG ++++ +F+ + H+ DV+ WN M
Sbjct: 517 SLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSM--HERDVITWNVM 574
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
I G MHG + ++E F +M+ P+ +TFL +LSACAH GLV E Y F + +
Sbjct: 575 ISGYGMHGDARSAIEFFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKMQDYSV 634
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P +HYACMVD L R+G + EA + MP+ P + G+LL+ C H ++++ + K
Sbjct: 635 APNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGALLSSCKIHNEIEMGIRIAK 694
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
++ ++DG YV +SN+Y+ +W+EA R M+ RGV+K GWS V
Sbjct: 695 HAIDSDVENDGYYVMISNMYSSIGKWEEAEKARGIMKERGVRKKTGWSAV 744
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 147/316 (46%), Gaps = 37/316 (11%)
Query: 16 SCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGR 75
S ++ + + F WN++I+ + + ++++ + M + P+H T P + +
Sbjct: 86 STELFDEIPHRDAFLWNSIIKAHFSNGEYSRALDFYQWMRASEALPNHFTIPMIVASCAE 145
Query: 76 LAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
L ++H ++K G + + +S ++MY
Sbjct: 146 LELVNYGRSIHGLVSKLGLFSGSSAVGSSFVYMY-------------------------- 179
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV---GS 191
+KCG + A VF+ + R+VV+W+AL+ G V+ G+ K L EM + G
Sbjct: 180 -----SKCGVLEEAYGVFDEILFRDVVAWTALVIGCVQNGESKMGLECLCEMHRIGGDGE 234
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ N TL AC +LGAL +GR + ++ G+ + +Q+ L+ MY+KCG +EA
Sbjct: 235 RPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSKCGNPEEAHR 294
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
F E D++ W +MI + G+ E +++F EM + GI PD I +LS+ ++
Sbjct: 295 SF--CEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNS 352
Query: 312 GLVMEAWYFFKSLGKR 327
V EA F + +R
Sbjct: 353 MRVFEAKAFHGLIIRR 368
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 129/291 (44%), Gaps = 37/291 (12%)
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
S +++ + + HA I +GY +++FI++ LI +Y S + E+FD +P
Sbjct: 42 SNQISSLKTLLQSHAFIITSGYSNNIFIASKLISLYASFHKPSCSTELFDEIP------- 94
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
R+ W+++I + G+Y AL ++ MR +
Sbjct: 95 ------------------------HRDAFLWNSIIKAHFSNGEYSRALDFYQWMRASEAL 130
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL-SLTLPLQTSLIDMYAKCGAIKEALI 251
N T+ ++ +CA L ++ GR + + GL S + + +S + MY+KCG ++EA
Sbjct: 131 PNHFTIPMIVASCAELELVNYGRSIHGLVSKLGLFSGSSAVGSSFVYMYSKCGVLEEAYG 190
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV---GITPDEITFLGLLSAC 308
VF E DV+ W A++ G +G K LE EM + G P+ T G AC
Sbjct: 191 VFD--EILFRDVVAWTALVIGCVQNGESKMGLECLCEMHRIGGDGERPNFRTLEGGFQAC 248
Query: 309 AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
+ G ++E + K GM + ++ S+ G EA+ C++
Sbjct: 249 GNLGALLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSKCGNPEEAHRSFCEV 299
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/371 (22%), Positives = 140/371 (37%), Gaps = 52/371 (14%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAG---VSPDHLTYPFLAKASGRLAKRELAVAVHA 87
W ++ G ++ + +M R G P+ T +A G L +H
Sbjct: 203 WTALVIGCVQNGESKMGLECLCEMHRIGGDGERPNFRTLEGGFQACGNLGALLEGRCLHG 262
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK------ 141
+ KTG + + + L+ MY CG+ A F + K +SW SM+ Y++
Sbjct: 263 LVVKTGMDYSQVVQSLLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATE 322
Query: 142 CGEMNMARQVFELMPERNVVS---------------------------------WSALID 168
C +M V + P+ V+S +AL+
Sbjct: 323 CIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLS 382
Query: 169 GYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL 228
Y K G K A F + NE + + GA R + YMI +
Sbjct: 383 MYCKFGFLKLAEKFF-------GRVNEQNFEAWNLMVSGYGATHLARSIHCYMIKNLMDE 435
Query: 229 TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288
+ + SLIDMY K G + A +F + + D++ WN +I A G E+L L+ +
Sbjct: 436 NVSVNNSLIDMYGKSGNLTIARRIFCRIPR---DIVTWNTLISSYAHCGHFAEALSLYDK 492
Query: 289 MQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQ 348
M + + P+ T + +LSAC+H + E + ++D ++ GQ
Sbjct: 493 MVLEDLKPNSATLVSVLSACSHLASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQ 552
Query: 349 VTEAYEFICQM 359
+ ++ E M
Sbjct: 553 LEKSREIFNSM 563
>gi|413939596|gb|AFW74147.1| hypothetical protein ZEAMMB73_269656 [Zea mays]
Length = 524
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/433 (36%), Positives = 241/433 (55%), Gaps = 22/433 (5%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLR--AGVSPDHLTYPFLAKASGR----------- 75
F N ++R + +P ++ LF ++ R P++ T+ FL KA+
Sbjct: 42 FLPNQLLRSLLPA-HPLGALRLFPRLRRIIPDFRPNNYTFSFLLKAAADSSAPPYLEPES 100
Query: 76 -LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV---S 131
+ +HA +++ +++N LIH Y + G + AR +F G + S
Sbjct: 101 PFGSHAIVPCLHALAVVLAWDAHAYVANGLIHAYATHGVLPAARRLFGGAVASRAADVCS 160
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
W S+L AK G ++ AR +F+ MP RN V+WSA++ YV G + +A+ +FE+M
Sbjct: 161 WTSLLTACAKAGHVDEARALFDGMPRRNDVAWSAMLSAYVAAGSFGDAVRLFEDMLRSCV 220
Query: 192 KANEVTLVSVLCACAHLGALDQGR---MMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
+ N +V VL AC LGALDQGR +L G+++ + T+L+DMYAKCG+++
Sbjct: 221 RPNRAAVVGVLTACGALGALDQGRWVHALLVGGGGHGVAMDGVVATALVDMYAKCGSLET 280
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A VF + Q DV + AMI GL+ HG E+++LF +M + G+ P+E+TF+ +L+AC
Sbjct: 281 ARQVFAAAPRGQRDVFAYTAMISGLSDHGRCGEAIDLFGQMLVEGVRPNEVTFICVLTAC 340
Query: 309 AHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
GLV A F+S+G GM P EHY C+VD L RAGQ+ +A E + MP+ P + +
Sbjct: 341 GRAGLVGRAKEVFRSMGAVHGMEPGVEHYGCLVDVLGRAGQLADALEAVRSMPMRPDSYV 400
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
LG+LL C HG ++ E V + L EL DH G +V LSN+YA + +W+E R ME
Sbjct: 401 LGALLNACAAHGDVEAGEQVVRWLAELGLDHSGVHVQLSNMYAGWGKWEEVLKVRRDMEE 460
Query: 428 RGVKKYPGWSFVE 440
R V K PG S +E
Sbjct: 461 RRVAKVPGCSMLE 473
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 123/295 (41%), Gaps = 34/295 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
+A + G++D + + + W+ ++ Y + + ++ LF MLR+ V P+
Sbjct: 165 LTACAKAGHVDEARALFDGMPRRNDVAWSAMLSAYVAAGSFGDAVRLFEDMLRSCVRPNR 224
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYES---DLFISNSLIHMYGSCGDIVYAREV 120
+ A G L + VHA + G D ++ +L+ MY CG + AR+V
Sbjct: 225 AAVVGVLTACGALGALDQGRWVHALLVGGGGHGVAMDGVVATALVDMYAKCGSLETARQV 284
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
F P +R+V +++A+I G G EA+
Sbjct: 285 FAAAPRG-----------------------------QRDVFAYTAMISGLSDHGRCGEAI 315
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDM 239
+F +M G + NEVT + VL AC G + + + + R M G+ + L+D+
Sbjct: 316 DLFGQMLVEGVRPNEVTFICVLTACGRAGLVGRAKEVFRSMGAVHGMEPGVEHYGCLVDV 375
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
+ G + +AL + + D + A++ A HG V+ ++ + +G+
Sbjct: 376 LGRAGQLADALEAVRSMPM-RPDSYVLGALLNACAAHGDVEAGEQVVRWLAELGL 429
>gi|296087773|emb|CBI35029.3| unnamed protein product [Vitis vinifera]
Length = 1596
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/449 (35%), Positives = 248/449 (55%), Gaps = 42/449 (9%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGV 59
++SF ALS G++ Y+ + S + NP +F +NT+IR YS+S P ++ F ML V
Sbjct: 42 LISFCALSNSGSLSYASLIFSQIQNPNLFAYNTLIRAYSRSSTPQLALHYFQLMLDDENV 101
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAR 118
PD T+PF+ A L +H + K G SD + +L+ Y
Sbjct: 102 GPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGVASSDRHVQTALVRFY---------- 151
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
A+C M AR++F+ +P +VV W+ L++GYV+ G E
Sbjct: 152 ---------------------AECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRGLAPE 190
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLI 237
AL F M G + +E L + L CA LGAL QG+ + Y+ K L + + T+L+
Sbjct: 191 ALNAFRNMLVSGVEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIGTALV 250
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITP 296
DMYAKCG I ++ VF G+ K +V W+AMIGG A+HG V+++++ MQ+ G+ P
Sbjct: 251 DMYAKCGCIDRSVEVFEGMTKR--NVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLRP 308
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEF 355
D + LG++ ACAH GL E + +++ R G++PK EHY+CMVD L RAGQ+ EA +
Sbjct: 309 DGVVLLGVIMACAHAGLQEEGQFLLENMEARYGILPKHEHYSCMVDLLCRAGQLDEALKL 368
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVEL----QPDHDGRYVGLSNVYAI 411
I +MP++P A++ G+LL+GC H +DLAE+ ++L+ + + DG YV LSN+Y
Sbjct: 369 IRRMPMKPRAAVWGALLSGCRTHNNVDLAELAARELLMVGNGDGTEEDGAYVQLSNIYLA 428
Query: 412 FKRWDEARTTREAMETRGVKKYPGWSFVE 440
++ ++A R + + +K PG S +E
Sbjct: 429 AQKCEDACRIRRMIGDKRIKTKPGCSLIE 457
>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g45350, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
Length = 613
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 172/510 (33%), Positives = 257/510 (50%), Gaps = 100/510 (19%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
F WN VI+ +S K+P +++ L ML GVS D + + KA RL + + +H
Sbjct: 87 FLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGF 146
Query: 89 IAKTGYESDLFISNSLIHMY-------------------------------GSCGDIVYA 117
+ KTG SDLF+ N LI +Y CG IV A
Sbjct: 147 LKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSA 206
Query: 118 REVFDGMPTKMS----------------------------------VSWNSMLDGYAKCG 143
RE+FD MP +M +SWNSM+DGY K G
Sbjct: 207 RELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHG 266
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGSK--------- 192
+ A+ +F++MP R+VV+W+ +IDGY K G A +F++M RDV +
Sbjct: 267 RIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQ 326
Query: 193 ---------------------ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
++ TLV VL A A LG L + M Y+++K L
Sbjct: 327 NKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGK 386
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
L +LIDMY+KCG+I+ A++VF G+E D WNAMIGGLA+HG + + ++ +++
Sbjct: 387 LGVALIDMYSKCGSIQHAMLVFEGIENKSIDH--WNAMIGGLAIHGLGESAFDMLLQIER 444
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVT 350
+ + PD+ITF+G+L+AC+H GLV E F+ + ++ + P+ +HY CMVD LSR+G +
Sbjct: 445 LSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIE 504
Query: 351 EAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410
A I +MP+EP + + LT C +H + + E+V K L+ + YV LSN+YA
Sbjct: 505 LAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYA 564
Query: 411 IFKRWDEARTTREAMETRGVKKYPGWSFVE 440
F W + R R M+ R ++K PG S++E
Sbjct: 565 SFGMWKDVRRVRTMMKERKIEKIPGCSWIE 594
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/430 (34%), Positives = 232/430 (53%), Gaps = 31/430 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I + +V + + W +I Y +++ P K++ LF KM G D +T +A
Sbjct: 181 GEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVA 240
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G+L +A++VH G+ D+ + NS++ MY CG++ AR VFD M + +
Sbjct: 241 SAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGI 300
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNSML GY + G +AL +F +M+
Sbjct: 301 SWNSMLSGYTQNGRPT-------------------------------DALSLFNQMQASE 329
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
N VT + ++ AC++LG+ GR + ++I + + L+ +++DMY KCG + A+
Sbjct: 330 CDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAV 389
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F+ E + DV WN +I G +HG KE+LELF+ MQ+ G+ P++ITF +LSAC+H
Sbjct: 390 EMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSH 449
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GL+ E F + K + P+ +HYACMVD L RAG + EA+ I ++P P+ + G+
Sbjct: 450 AGLIDEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGA 509
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL C HG +L EI L +L+P+H G YV +SN+YA +W E R+ M++RG+
Sbjct: 510 LLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGL 569
Query: 431 KKYPGWSFVE 440
KK +S +E
Sbjct: 570 KKPAAFSVIE 579
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/432 (36%), Positives = 247/432 (57%), Gaps = 7/432 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D+S +L +P ++ + I +S ++L ML G+ P T
Sbjct: 70 GRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASL 129
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L+ L A+HA K D +++ +L+ MY GD AR +FD MP V
Sbjct: 130 PACRGLS---LGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVV 186
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
S +ML YA G ++ AR++F+ +P ++ + W+A+IDGY + G EAL +F M
Sbjct: 187 SVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSS 246
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKEA 249
++ +EVT+V VL A A LG ++ G+ + Y+ + + + L + + T+L+DMY KCG++++A
Sbjct: 247 AEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDA 306
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ VFHG+ D+++WNAMI G AMHG +++LE+F +++ G+ P +ITF+GLL+AC+
Sbjct: 307 VAVFHGIG--NKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACS 364
Query: 310 HGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E FF+S+ G+ PK EHY CMVD L RAG + EA+ + + + P A M
Sbjct: 365 HSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMW 424
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
SLL C H + L + + LV + G Y+ LSN+YA +W+E R M+
Sbjct: 425 VSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKAS 484
Query: 429 GVKKYPGWSFVE 440
G++K PG S +E
Sbjct: 485 GIQKEPGCSAIE 496
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 131/271 (48%), Gaps = 38/271 (14%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G +D + ++ L WN +I GY++ PN+++ LF +MLR+ PD +T +
Sbjct: 198 MGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLV 257
Query: 70 AKASGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A +L E +H+ + + + ++ ++ +L+ MY CG + A VF G+ K
Sbjct: 258 LSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKD 317
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
V WN+M++GYA M+ GD ++AL +F ++RD
Sbjct: 318 IVVWNAMINGYA----MH---------------------------GDSRKALEMFVQLRD 346
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIK 247
G ++T + +L AC+H G +++GR + M + G+ + ++D+ + G I+
Sbjct: 347 QGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIE 406
Query: 248 EALIVFHGVEKH--QSDVLIWNAMIGGLAMH 276
EA FH V+ D ++W +++ +H
Sbjct: 407 EA---FHLVQSLTITPDAVMWVSLLAACRLH 434
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 95/264 (35%), Gaps = 67/264 (25%)
Query: 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
A +HA + + G +SD ++ L YA
Sbjct: 40 ASELHAAVVRKGLDSDRAVAFRLQR-------------------------------AYAA 68
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
G ++ + + + + +++ I + G + L + +M G TL +
Sbjct: 69 SGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSAS 128
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM---------------------- 239
L AC L GR + Y LS + T+L+ M
Sbjct: 129 LPACR---GLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHV 185
Query: 240 ---------YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ 290
YA GA+ +A +F G+ + D + WNAMI G HG E+L+LF M
Sbjct: 186 VSVTAMLTCYANMGALDDARRLFDGLPR--KDFICWNAMIDGYTQHGKPNEALQLFRRML 243
Query: 291 IVGITPDEITFLGLLSACAHGGLV 314
PDE+T + +LSA A G V
Sbjct: 244 RSSAEPDEVTVVLVLSAVAQLGTV 267
>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
Length = 606
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 172/510 (33%), Positives = 257/510 (50%), Gaps = 100/510 (19%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
F WN VI+ +S K+P +++ L ML GVS D + + KA RL + + +H
Sbjct: 80 FLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGF 139
Query: 89 IAKTGYESDLFISNSLIHMY-------------------------------GSCGDIVYA 117
+ KTG SDLF+ N LI +Y CG IV A
Sbjct: 140 LKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSA 199
Query: 118 REVFDGMPTKMS----------------------------------VSWNSMLDGYAKCG 143
RE+FD MP +M +SWNSM+DGY K G
Sbjct: 200 RELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHG 259
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGSK--------- 192
+ A+ +F++MP R+VV+W+ +IDGY K G A +F++M RDV +
Sbjct: 260 RIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQ 319
Query: 193 ---------------------ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
++ TLV VL A A LG L + M Y+++K L
Sbjct: 320 NKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGK 379
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
L +LIDMY+KCG+I+ A++VF G+E D WNAMIGGLA+HG + + ++ +++
Sbjct: 380 LGVALIDMYSKCGSIQHAMLVFEGIENKSIDH--WNAMIGGLAIHGLGESAFDMLLQIER 437
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVT 350
+ + PD+ITF+G+L+AC+H GLV E F+ + ++ + P+ +HY CMVD LSR+G +
Sbjct: 438 LSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIE 497
Query: 351 EAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410
A I +MP+EP + + LT C +H + + E+V K L+ + YV LSN+YA
Sbjct: 498 LAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYA 557
Query: 411 IFKRWDEARTTREAMETRGVKKYPGWSFVE 440
F W + R R M+ R ++K PG S++E
Sbjct: 558 SFGMWKDVRRVRTMMKERKIEKIPGCSWIE 587
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/432 (36%), Positives = 251/432 (58%), Gaps = 7/432 (1%)
Query: 14 DYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS 73
D + L+ ++ I W + I +++ ++ F M AGV P+H+T+ L
Sbjct: 11 DPKIQKLNQSTSETIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGC 70
Query: 74 GRLAKRELAVA--VHAQIAKTGYE-SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
G + A+ +H K G++ + + + +++ MY + AR VFD M K SV
Sbjct: 71 GDFSSGSEALGDLLHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSV 130
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WN+M+DGY + G+++ A ++F+ MPER+++SW+A+I+G+VK G ++EAL F EM+ G
Sbjct: 131 TWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISG 190
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K + V +++ L AC +LGAL G + RY++ + + + SLID+Y +CG ++ A
Sbjct: 191 VKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAR 250
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF +EK V+ WN++I G A +G ESL F +MQ G PD +TF G L+AC+H
Sbjct: 251 EVFDKMEKRT--VVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSH 308
Query: 311 GGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E +F+++ + + P+ EHY C+VD SRAG++ EA + + MP++P ++G
Sbjct: 309 VGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEALKVVQSMPMKPNEVVIG 368
Query: 370 SLLTGCMNHGKLD-LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
SLL C HG LAE + K L ++ YV LSN+YA +W+ A R M+
Sbjct: 369 SLLAACRTHGNNTVLAERLMKHLSDVNVKGHSNYVILSNMYAADGKWEGASQMRRKMKGL 428
Query: 429 GVKKYPGWSFVE 440
G+KK PG+S +E
Sbjct: 429 GLKKQPGFSSIE 440
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 127/268 (47%), Gaps = 33/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + K+ + + W +I G+ K ++++ F +M +GV PD++
Sbjct: 143 GQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAAL 202
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L + VH + +++++ +SNSLI +Y CG + +AREVFD M + V
Sbjct: 203 NACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVV 262
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS++ G+A G + E+LV F +M++ G
Sbjct: 263 SWNSVIVGFAANGNAH-------------------------------ESLVYFRKMQEEG 291
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
K + VT L AC+H+G +++G + M D +S + L+D+Y++ G ++EA
Sbjct: 292 FKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEA 351
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
L V + ++V+I +++ HG
Sbjct: 352 LKVVQSMPMKPNEVVI-GSLLAACRTHG 378
>gi|224075377|ref|XP_002304609.1| predicted protein [Populus trichocarpa]
gi|222842041|gb|EEE79588.1| predicted protein [Populus trichocarpa]
Length = 431
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/419 (36%), Positives = 245/419 (58%), Gaps = 9/419 (2%)
Query: 26 PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAV 85
PR Y NT + + +P+K++ L+ M R + D + F K+ L + +
Sbjct: 17 PRKSY-NTWVLAIKNASSPHKALQLYTHMHRQSIPFDTFSILFTLKSCTHLKNLTIIHHL 75
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
H+ I K G+ + +++S L+H Y + A ++FD MP + V+WN+M+ GY++ G +
Sbjct: 76 HSHIIKLGFNTHVYVSTCLLHAY-AVMSFDQACDLFDEMPQRNIVTWNTMITGYSRSGSI 134
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDVGSKANEVTLVSVLCA 204
N AR +FE MP R+ SWSA+I Y+ G + L F+EM + K ++VT+ SVL
Sbjct: 135 NKARSLFEAMPVRDAASWSAMITCYINNGFRDQGLSFFQEMMANENPKPDQVTVGSVLSG 194
Query: 205 CAHLGALD--QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
CAH+G+L G+ + +++ G L + + T L+DMYAKCG K A+ VF V + +
Sbjct: 195 CAHMGSLGLLAGKSVHGFVVKNGWELNVDIGTLLVDMYAKCGFFKNAVWVF--VLMQERN 252
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
V W A+I G A HGF +E L LF MQ G+ P+E+TF G+L+ACA GL+ E +FK
Sbjct: 253 VSTWTALICGAAQHGFCQEVLSLFKMMQEAGVRPNEMTFTGILNACARKGLIEEGRKYFK 312
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ + G+ P+ +HY CMVD +AG + EAYE I +M EP + GS L+ C H + D
Sbjct: 313 MIKETGLEPRIQHYGCMVDMFGKAGLLEEAYEVIKEMEFEPNIVIWGSFLSACKMHKQFD 372
Query: 383 LAE-IVGKKLVELQPDHDGR-YVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
+A+ ++G+ L +++P++DG Y +S++Y + K+WD+A R + + V+K G S +
Sbjct: 373 IADRVIGQVLRDIKPENDGGIYSLVSDLYVLNKKWDDAERVRNLVLNQNVRKARGSSCI 431
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/423 (37%), Positives = 237/423 (56%), Gaps = 11/423 (2%)
Query: 26 PR-IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL------AKASGRLAK 78
PR + W + I ++ + + + + ML + +P L A +
Sbjct: 29 PRDVVSWTSTIARAARQGDLHAAAASLCAMLSSPAAPAPNDVTLLTVLSACADSPSSPLA 88
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
R LA+ +HA+ K + S L +S L Y + A ++FD MP + V++N+M+ G
Sbjct: 89 RPLALTLHARALKL-FPSHLLLSTCLARFYLASRLPHLALQLFDTMPVRSVVTYNTMVSG 147
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
+ G ++ A +VF+ MP + VSW+ALIDG+VK G + EA+ F M + + VTL
Sbjct: 148 LMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTL 207
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
++V+ ACA +GAL G + R ++ +GL + + SLIDMYA+CG +K A VFH + K
Sbjct: 208 IAVVSACAEVGALGLGMWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHSIRK 267
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
V+ WN+MI GLA +G E++ELF EM+ G PD +T G+L+AC+H GL
Sbjct: 268 RT--VVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGL 325
Query: 319 YFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
++ + G+ + EHY C+VD L RAG++ EA + MP+ P +LG+LL GC
Sbjct: 326 RYYDLMTTEYGIAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRM 385
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
HG LD+AE + + L EL P D YV LSN+YA +WD A R M+ RGVKK PG S
Sbjct: 386 HGDLDMAEQLMQHLFELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGVKKRPGHS 445
Query: 438 FVE 440
VE
Sbjct: 446 IVE 448
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 166/393 (42%), Gaps = 59/393 (15%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S L G +D + +V + P W +I G+ K+ +++I F ML V PD++
Sbjct: 146 SGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYV 205
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T + A + L + VH + + G E ++ ++NSLI MY CG + A +VF +
Sbjct: 206 TLIAVVSACAEVGALGLGMWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHSI 265
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ VSWNSM+ G A G C EA+ +FE
Sbjct: 266 RKRTVVSWNSMIVGLAANG----------------------------LC---TEAIELFE 294
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY----MIDKGLSLTLPLQTSLIDMY 240
EMR G K + VTL VL AC+H G + G LRY + G++ + ++D+
Sbjct: 295 EMRRQGFKPDAVTLTGVLTACSHAGLTEHG---LRYYDLMTTEYGIAARMEHYGCVVDLL 351
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
+ G + EA+ V + ++V++ A++ G MHG + + +L + + P
Sbjct: 352 GRAGRLDEAMHVVETMPMRPNEVVL-GALLAGCRMHGDLDMAEQLM--QHLFELDPGGDA 408
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
LLS + +SL K RG+ + H +D + +EF+
Sbjct: 409 NYVLLSNIYAAVGKWDGAGKVRSLMKARGVKKRPGHSIVEIDG--------DVHEFVSSD 460
Query: 360 PLEPTASMLGSLLT---------GCMNHGKLDL 383
P A +G +L GC +HG L
Sbjct: 461 RSHPQAEEIGQMLGLLRHEMAMYGCDDHGSSSL 493
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 224/360 (62%), Gaps = 13/360 (3%)
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSC--GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
H Q K G S +++N+++ Y C GD+ A ++FD MP K +V+ ++M+ Y
Sbjct: 1 HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAY---- 56
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
A +VFELMPE+++V+W+++I+G+ G EAL +++ M G + + T+VS+L
Sbjct: 57 -FESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLS 115
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH--GVEKHQS 261
ACA L L GR YM+ GL+ L +L+D+YAKCG I EA +F G+E+
Sbjct: 116 ACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIER--- 172
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
+V+ W ++I GLA++GF KE+LE F +M+ G+ P EITF+G+L AC+H G+V E + +F
Sbjct: 173 NVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYF 232
Query: 322 KSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
K + ++ +VP+ EHY CMVD L RAG + EAY++I MPL+P A + +LL C HG
Sbjct: 233 KRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGH 292
Query: 381 LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L L +L++L+P G YV LSN+YA +RW + R M + GV+K PG+S VE
Sbjct: 293 LGLGAFARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVE 352
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 34/290 (11%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
KV + I WN+VI G++ + PN++++L+ +M GV PD T L A LA
Sbjct: 62 KVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELA 121
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
L H + K G +L +N+L+ +Y CG I AR++FD
Sbjct: 122 TLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFD--------------- 166
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
E+ ERNVVSW++LI G G KEAL F++M G +E+T
Sbjct: 167 ---------------EMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEIT 211
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
V VL AC+H G +++G + M ++ + + ++D+ + G +KEA +
Sbjct: 212 FVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDM 271
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
Q + +IW ++G +HG + L F +++ + P + LLS
Sbjct: 272 PL-QPNAVIWRTLLGACTIHGHL--GLGAFARARLLQLEPKDSGDYVLLS 318
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 161/433 (37%), Positives = 238/433 (54%), Gaps = 36/433 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I + K+ + + WN +I GY+++ N +++ LF +M++ V PD T +
Sbjct: 168 GYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVV 227
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + A EL VH+ I G+ S+L I N+LI
Sbjct: 228 SACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI------------------------- 262
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
D Y KCGE+ A +FE + ++V+SW+ LI GY YKEAL++F+EM G
Sbjct: 263 ------DLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 316
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMID--KGLSLTLPLQTSLIDMYAKCGAIKE 248
N+VT++S+L ACAHLGA++ GR + Y+ KG++ +TSLIDMYAKCG I+
Sbjct: 317 ESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEA 376
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A VF + + WNAMI G AMHG + ++F+ M+ I PD+ITF+GLLSAC
Sbjct: 377 AQQVFDSILNRS--LSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSAC 434
Query: 309 AHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
+H G++ + F+S+ + + PK EHY CM+D L +G EA E I M +EP +
Sbjct: 435 SHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVI 494
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
SLL C HG ++L E + L++++P + G YV LSN+YA RW+E R +
Sbjct: 495 WCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLND 554
Query: 428 RGVKKYPGWSFVE 440
+G+KK PG S +E
Sbjct: 555 KGMKKVPGCSSIE 567
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 134/410 (32%), Positives = 228/410 (55%), Gaps = 9/410 (2%)
Query: 1 MLSFSALS-YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
++ F LS + + Y+ V + P + WNT+ RG++ S +P ++ L+V M+ G+
Sbjct: 25 LIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGL 84
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T+PFL K+ + +H + K GY+ DL++ SLI MY G + AR+
Sbjct: 85 LPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARK 144
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD + VS+ +++ GYA G + A+++F+ +P ++VVSW+A+I GY + G+ KEA
Sbjct: 145 VFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEA 204
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F+EM + +E T+VSV+ ACA +++ GR + ++ D G L + +LID+
Sbjct: 205 LELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDL 264
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y KCG ++ A +F G+ DV+ WN +IGG KE+L LF EM G +P+++
Sbjct: 265 YIKCGEVETACGLFEGLS--YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDV 322
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
T L +L ACAH G + + + KR G+ S H ++D ++ G + EA + +
Sbjct: 323 TMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDI-EAAQQVF 381
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV--ELQPDHDGRYVGL 405
L + S +++ G HG+ + A + ++ E++PD D +VGL
Sbjct: 382 DSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPD-DITFVGL 430
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 119/297 (40%), Gaps = 57/297 (19%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+HAQ+ KTG + + + LI + FDG+P +S
Sbjct: 6 IHAQMIKTGLHNTNYALSKLI-------EFCVLSPHFDGLPYAIS--------------- 43
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
VFE + E N++ W+ + G+ D AL ++ M +G N T +L +
Sbjct: 44 ------VFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 97
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ---- 260
CA A +G+ + +++ G L L + TSLI MY + G +++A VF
Sbjct: 98 CAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSY 157
Query: 261 -------------------------SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
DV+ WNAMI G A G KE+LELF EM +
Sbjct: 158 TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR 217
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352
PDE T + ++SACA + + G + ++D + G+V A
Sbjct: 218 PDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 274
>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
Length = 1822
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 148/423 (34%), Positives = 236/423 (55%), Gaps = 19/423 (4%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK--------------ASGRLA 77
N IR ++ P + + F + + PDH + FL + S +
Sbjct: 1277 NAFIRALARGPRPCLAFAAFRDL---PLPPDHYSLNFLVRAATALVASAAEEKHVSAEVN 1333
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
R AV+ H + G+ +D + + ++ MY + GD+ +R F + V +M+
Sbjct: 1334 ARLQAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVA 1393
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
A G+++ AR +F+ MP+R+ V+WSA+I GY+ G +EAL++F+EM G+ E T
Sbjct: 1394 ALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEAT 1453
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
LVSVL ACA +G LD+G+ + Y+ +G+ +++ L T+L+DMY+KCGA+ A+ VF +
Sbjct: 1454 LVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMA 1513
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+ +V W + + GLAM+G E L+LF M+ GI P+ ++F+ +L C+ GLV E
Sbjct: 1514 --ERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEG 1571
Query: 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
F S+ K G+ P EHY CMVD RAG++ +A FI MP+EP + G+LL
Sbjct: 1572 RACFDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRI 1631
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
H +DL + KL+ ++ ++D +V LSN+YA + W R M+ +GVKK PGWS
Sbjct: 1632 HNSVDLGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWS 1691
Query: 438 FVE 440
+E
Sbjct: 1692 TIE 1694
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 116/277 (41%), Gaps = 36/277 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+AL+ G++D + + + W+ +I GY +++ LF +ML AG +
Sbjct: 1393 AALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEA 1452
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T + A ++ + VH + G + + + +L+ MY CG +V A EVF+ M
Sbjct: 1453 TLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESM 1512
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ +W S + G A MN G E L +F+
Sbjct: 1513 AERNVYTWTSAVSGLA----MN---------------------------GMGTECLQLFK 1541
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M G + N V+ V+VL C+ G +D+GR M G+ ++D+Y + G
Sbjct: 1542 RMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDKYGVDPWPEHYGCMVDLYGRAG 1601
Query: 245 AIKEALIVFHG--VEKHQSDVLIWNAMIGGLAMHGFV 279
+ +A+ + +E H+ +W A++ +H V
Sbjct: 1602 RLDDAISFINDMPMEPHEG---VWGALLNASRIHNSV 1635
>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
Length = 818
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 154/475 (32%), Positives = 256/475 (53%), Gaps = 46/475 (9%)
Query: 10 LGNIDYSCKVLSHLSN----PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
LG +D + ++ + +S P + WNTV+ G S+ +++ + ML+ G+ PD T
Sbjct: 217 LGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATT 276
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
L K+ + +H + E D++ +L+ MY CG + A++VFD +
Sbjct: 277 VSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALE 336
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPER--------------------------- 158
+ +WNS++ GYA G ++A ++ ELM +
Sbjct: 337 HRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVL 396
Query: 159 ------------NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
NVVSW++LI G G+Y+++ EM+ G + + VT+ +L ACA
Sbjct: 397 LLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACA 456
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
L +G+ + + + + + + T+LIDMY+K G++ A ++F ++ Q ++++
Sbjct: 457 GLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQ--QKNLVLC 514
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-G 325
NAM+ GLA+HG +E++ELF +M G+ PD ITF LL+AC GLV E W +F +
Sbjct: 515 NAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMET 574
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
K G+ P +E+YACMVD L+R G + EA +FI + P++P AS G+LLTGC HG L LAE
Sbjct: 575 KYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAE 634
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ + L L+P + Y+ + N+Y + +DEA + + AM+ RGV PGWS+++
Sbjct: 635 VAARNLFRLEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQ 689
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 158/352 (44%), Gaps = 27/352 (7%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN + ++++ +++I++F +M GV R AVHA
Sbjct: 124 WNKHVAMLAEAEEWDEAIAVFREMQARGVP------------------RRRGRAVHAYAL 165
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K ++ + L MY D+ A V D M V WN+++ A+ G ++ A +
Sbjct: 166 KLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALE 225
Query: 151 VFELM----PERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
+ M PE NV +W+ ++ G + G +EAL + M G + + T+ S+L + A
Sbjct: 226 LAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVA 285
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
+ G L G + + + L + T+L+DMYAKCG + A VF +E ++ W
Sbjct: 286 NTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALE--HRNLTTW 343
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
N+++ G A G +LEL M+ + PD T+ GL++ + G +A + +
Sbjct: 344 NSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKA 403
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTASMLGSLLTGC 375
G+ P + ++ G+ +++ F +M ++P+ + LL C
Sbjct: 404 AGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRAC 455
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 29/236 (12%)
Query: 158 RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMM 217
++ V W+ + + ++ EA+ +F EM+ G +GR +
Sbjct: 119 KDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPRR------------------RGRAV 160
Query: 218 LRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
Y + L + L MYA+ + A V + V+ WNA++ A G
Sbjct: 161 HAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGA--GSVVPWNAVVACCARLG 218
Query: 278 FVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYA 337
V ++LEL M G P+ T+ +LS C+ G EA S+ K+G+ P + +
Sbjct: 219 LVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVS 278
Query: 338 CMVDALSRAGQVTEAYEFIC---QMPLEP---TASMLGSLLTGCMNHGKLDLAEIV 387
++ +++ G + E C + LEP T + L + C G+LD A+ V
Sbjct: 279 SLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKC---GRLDCAQKV 331
>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 159/435 (36%), Positives = 236/435 (54%), Gaps = 7/435 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + ++L ++ WN +I GY +++LF KM GV D TY +
Sbjct: 237 GDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVI 296
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESD----LFISNSLIHMYGSCGDIVYAREVFDGMPT 126
A L VHA I K D L + N+LI +Y G + AR++F MP
Sbjct: 297 SACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPV 356
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
K ++WN++L GY G M A+ F MPE+N+++W+ +I G + G ++AL +F +M
Sbjct: 357 KDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQM 416
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ G + N+ + AC+ LGAL+ GR + ++ G TL + ++I MYA+CG +
Sbjct: 417 KLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIV 476
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ A +F + D + WN+MI L HG +++EL+ +M GI PD TFL +LS
Sbjct: 477 EAARTMF--LTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLS 534
Query: 307 ACAHGGLVMEAWYFFKS-LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC+H GLV E +F S L G+ P +HYA M+D RAG+ ++A I MP E A
Sbjct: 535 ACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARA 594
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
+ +LL GC HG +DL +KL +L P HDG YV LSN+YA RW++ TR+ M
Sbjct: 595 PIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLM 654
Query: 426 ETRGVKKYPGWSFVE 440
RGVKK P S+ E
Sbjct: 655 RDRGVKKEPACSWTE 669
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/423 (26%), Positives = 197/423 (46%), Gaps = 50/423 (11%)
Query: 5 SALSYLGNIDYSCKVLSH--LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD 62
+A S LGN+ + ++ + L ++N +I GYS + + +I LF M A PD
Sbjct: 87 TAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPD 146
Query: 63 HLTYPFLAKASGRLAKRELAVA-VHAQIAKTGYESDLFISNSLIHMYGSCGD-------- 113
T+ + AS + E +H + K G E + N+L+ +Y C
Sbjct: 147 DFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSS 206
Query: 114 -IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVK 172
+ AR++FD MP + W +++ GY + G++ AR++ + M E+ ++W+A+I GY+
Sbjct: 207 LMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLH 266
Query: 173 CGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS----L 228
G +++AL +F +MR +G + +E T SV+ ACA G G+ + Y++ L+
Sbjct: 267 HGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDF 326
Query: 229 TLPLQTSLIDMYAKCGAIKEALIVFHGV-----------------------------EKH 259
L + +LI +Y K G + A +F+ + +
Sbjct: 327 LLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMP 386
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
+ ++L W MI GLA +GF +++L+LF +M++ G P++ F G ++AC+ G +
Sbjct: 387 EKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQ 446
Query: 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP-LEPTA--SMLGSLLTGCM 376
+ G M+ +R G V A MP ++P + SM+ +L G
Sbjct: 447 LHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAAL--GQH 504
Query: 377 NHG 379
HG
Sbjct: 505 GHG 507
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 161/355 (45%), Gaps = 46/355 (12%)
Query: 76 LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSM 135
L+ LA VH + +G++ I N LI +Y D VYAR++FD +P ++ ++
Sbjct: 26 LSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTL 85
Query: 136 LDGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
+ Y+ G + MAR++F P R+ V ++A+I GY D A+ +F MR +
Sbjct: 86 ITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQP 145
Query: 194 NEVTLVSVLCACAHLGALD-QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG-------- 244
++ T SVL A + + Q M ++ G+ + + +L+ +Y KC
Sbjct: 146 DDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSS 205
Query: 245 -AIKEALIVFHGVEKHQSDV-----------------------------LIWNAMIGGLA 274
+ A +F + K + + WNAMI G
Sbjct: 206 SLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYL 265
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSE 334
HG +++L LF +M+++G+ DE T+ ++SACA GG + + K + P +
Sbjct: 266 HHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRD 325
Query: 335 HYACMVDALS----RAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
+ + L + G+V A + +MP++ + +LL+G +N G+++ A+
Sbjct: 326 FLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITW-NTLLSGYVNAGRMEEAK 379
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 156/436 (35%), Positives = 246/436 (56%), Gaps = 13/436 (2%)
Query: 8 SYLGN--IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
+Y+ N +D + + + W TVI GY + +++ L +M V+
Sbjct: 273 AYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQ--- 329
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
A SG + + + A QI D+ N++I Y CG + A +F M
Sbjct: 330 ---TAMISGYVQNKRMDDA--RQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMV 384
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
K VSWN+M+ YA+ G+M+ A ++FE M E+N+VSW++LI G + G Y +AL F
Sbjct: 385 KKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFML 444
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M G K ++ T L +CAHL AL G+ + + ++ G + L + +LI MYAKCG+
Sbjct: 445 MGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGS 504
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
I A ++F ++ DV+ WN++I A++G +E+L+LF +M++ G+ PDE+TF+G+L
Sbjct: 505 ISSAELLFKDIDHF--DVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGIL 562
Query: 306 SACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
SAC+H GL+ + FK + + + P +EHYACMVD L RAG++ EA++ + M +
Sbjct: 563 SACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINAN 622
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
A + G+LL C HG L+LA+ +KL+E +P YV LSN+ A RWDE R
Sbjct: 623 AGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRL 682
Query: 425 METRGVKKYPGWSFVE 440
M+ +G +K PGWS++E
Sbjct: 683 MKEKGAEKQPGWSWIE 698
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 182/402 (45%), Gaps = 49/402 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
SA + G I + ++ + I WN++I Y + ++ LF KM P
Sbjct: 54 SAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKM------PTRD 107
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
Y + + ELA A + Y+ + N+++ Y AR +FD M
Sbjct: 108 LYSWTLMITCYTRNGELAKARNL-FNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAM 166
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
P K VSWNSML GY + GEM + Q FE M ER+VVSW+ ++DG+V+ GD + FE
Sbjct: 167 PAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFE 226
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM--------------------IDK 224
++ + N V+ V++LC A G + + R + M +D+
Sbjct: 227 KIPN----PNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDE 282
Query: 225 GLSLTLPLQ-------TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
+SL + + T++I+ Y + G + EA + + + +V AMI G +
Sbjct: 283 AISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYR--NVAAQTAMISGYVQNK 340
Query: 278 FVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYA 337
+ ++ ++F ++ I D + + +++ + G + EA + FK + K+ +V +
Sbjct: 341 RMDDARQIFNQISI----RDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVS----WN 392
Query: 338 CMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
MV + ++ GQ+ A + +M E SL++G +G
Sbjct: 393 TMVASYAQVGQMDAAIKIFEEMK-EKNIVSWNSLISGLTQNG 433
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 145/303 (47%), Gaps = 35/303 (11%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
++ + +G +D + K+ + I WN++I G +++ + ++ F+ M G PD
Sbjct: 396 ASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQS 455
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T+ + LA ++ +H + K+GY +DLF+SN+LI MY CG I A +F +
Sbjct: 456 TFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDI 515
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
VSWNS++ YA +N G+ +EAL +F
Sbjct: 516 DHFDVVSWNSLIAAYA----LN---------------------------GNGREALKLFH 544
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKC 243
+M G +EVT V +L AC+H+G +DQG + + M+ + ++D+ +
Sbjct: 545 KMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRA 604
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G ++EA + G+ K ++ IW A++G +HG ++ L F +++ P + +
Sbjct: 605 GRLEEAFQLVRGM-KINANAGIWGALLGACRIHGNLE--LAKFAAEKLLEFEPHKTSNYV 661
Query: 304 LLS 306
LLS
Sbjct: 662 LLS 664
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 151/330 (45%), Gaps = 23/330 (6%)
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV 161
NS+I + G I AR++FDGMP + VSWNSM+ Y + ARQ+F+ MP R++
Sbjct: 50 NSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLY 109
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
SW+ +I Y + G+ +A +F + K N V +++ A D+ R + M
Sbjct: 110 SWTLMITCYTRNGELAKARNLFNLL---PYKWNPVCCNAMVAGYAKNRQFDEARRLFDAM 166
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
K L S++ Y + G ++ L F E + DV+ WN M+ G G +
Sbjct: 167 PAKDLV----SWNSMLTGYTRNGEMRLGLQFFE--EMAERDVVSWNLMVDGFVEVGDLNS 220
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
S E F ++ P+ ++++ +L A G + EA F + R +V + M+
Sbjct: 221 SWEFFEKIP----NPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVA----WNAMIA 272
Query: 342 ALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD-G 400
A + V EA +MP E + +++ G + GKLD A ++L+ P +
Sbjct: 273 AYVQNCHVDEAISLFMEMP-EKNSISWTTVINGYVRMGKLDEA----RQLLNQMPYRNVA 327
Query: 401 RYVGLSNVYAIFKRWDEARTTREAMETRGV 430
+ + Y KR D+AR + R V
Sbjct: 328 AQTAMISGYVQNKRMDDARQIFNQISIRDV 357
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/431 (35%), Positives = 233/431 (54%), Gaps = 34/431 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I+ + +V + + W +IRGY+++ N + LF M G+ PD +TY +
Sbjct: 312 GSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHII 371
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A A LA +H+Q+ + G+ +DL + +L+HMY
Sbjct: 372 NACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMY---------------------- 409
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
AKCG + ARQVF+ M R+VVSWSA+I YV+ G +EA F M+
Sbjct: 410 ---------AKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNN 460
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ + VT +++L AC HLGALD G + I L +P+ +LI+M K G+I+ A
Sbjct: 461 VEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERAR 520
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F + Q DV+ WN MIGG ++HG +E+L+LF M P+ +TF+G+LSAC+
Sbjct: 521 YIFENMV--QRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSR 578
Query: 311 GGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
G V E FF L RG+VP E Y CMVD L RAG++ EA I +MPL+P +S+
Sbjct: 579 AGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWS 638
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C +G LD+AE ++ + +P YV LS++YA W+ R+ ME+RG
Sbjct: 639 TLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRG 698
Query: 430 VKKYPGWSFVE 440
V+K G +++E
Sbjct: 699 VRKEQGCTWIE 709
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 2/177 (1%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
N+++ ++ CG M ARQ F+ + + VV+W+A+I GY + G KEA +F +M D +
Sbjct: 100 NTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAME 159
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ +T + VL AC+ L G+ +I G + T+L+ MY K G++ A V
Sbjct: 160 PSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQV 219
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
F G+ K DV +N MIGG A G +++ +LF MQ G P+ I+FL +L C+
Sbjct: 220 FDGLYKR--DVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCS 274
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 106/440 (24%), Positives = 181/440 (41%), Gaps = 117/440 (26%)
Query: 56 RAGVSPDHL---TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG 112
R G +H+ TY L + L L V I ++G + +++ N+LI ++ CG
Sbjct: 51 RLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICG 110
Query: 113 DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSW----- 163
+++ AR+ FD + K V+WN+++ GYA+ G + A RQ+ + E +++++
Sbjct: 111 NMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLD 170
Query: 164 ------------------------------SALIDGYVKCGD-----------YK----- 177
+AL+ YVK G YK
Sbjct: 171 ACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVST 230
Query: 178 ---------------EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI 222
+A +F M+ G K N ++ +S+L C+ AL G+ + +
Sbjct: 231 FNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCM 290
Query: 223 DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKES 282
+ GL + + T+LI MY CG+I+ A VF ++ DV+ W MI G A + ++++
Sbjct: 291 NTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVR--DVVSWTVMIRGYAENSNIEDA 348
Query: 283 LELFTEMQIVGITPDEITFLGLLSACAHG------------------------------- 311
LF MQ GI PD IT++ +++ACA
Sbjct: 349 FGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHM 408
Query: 312 ----GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPT 364
G + +A F ++ +R +V ++ M+ A G EA+E M +EP
Sbjct: 409 YAKCGAIKDARQVFDAMSRRDVVS----WSAMIGAYVENGCGEEAFETFHLMKRNNVEPD 464
Query: 365 ASMLGSLLTGCMNHGKLDLA 384
+LL C + G LDL
Sbjct: 465 VVTYINLLNACGHLGALDLG 484
>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
Length = 563
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/445 (33%), Positives = 250/445 (56%), Gaps = 16/445 (3%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPF 68
L ++ Y+ + +L++P +F + +I Y+ +P + L+ M+R G + P++ YP
Sbjct: 89 LADLCYARYIFDNLTSPNVFLYTAMITAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPH 148
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGS-CGDIVYAREVFDGMPTK 127
+ ++ + VH Q+ K+G+ + +++ Y DI AR++FD M +
Sbjct: 149 VLRSCPDVLGSNATKMVHTQVLKSGFGGYPVVQTAIVDSYSRFSSDIGSARQMFDEMLER 208
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM- 186
VSW +M+ GYA+ G + A ++FE MPER+V +W+ALI G + G + EA+ +F+ M
Sbjct: 209 TVVSWTAMISGYARLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMV 268
Query: 187 --------RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
D +K N+ TL S L AC H G L G+ + Y+ + +L+D
Sbjct: 269 LLALEGNNNDRENKPNKTTLGSALSACGHTGMLHLGKWIHGYVFKTYPGQDSFISNALLD 328
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG--ITP 296
MY KCG +K A VF + ++ WN++I LA+HG +++LF E+ G + P
Sbjct: 329 MYGKCGNLKVARRVFDMIT--LKNLTSWNSLINCLALHGHSGSAIDLFAELIHCGDGVKP 386
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEF 355
+E+TF+G+L+AC HGGLV + + +F+ + + + P+ EH+ C++D L RAG+ EA E
Sbjct: 387 NEVTFVGVLNACTHGGLVEKGYSYFEMMRRDYDIEPQIEHFGCLIDLLGRAGRFEEAMEV 446
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
+ M +EP + GSLL C HG+ DLAE KKL+E+ P + G + L+N+YA F +W
Sbjct: 447 VRGMNIEPDEVVWGSLLNACKIHGRSDLAEYSVKKLIEMDPKNGGYRIMLANIYAEFGKW 506
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
DE R R ++ + K PG S++E
Sbjct: 507 DEVRKVRRLLKEKNAYKTPGCSWIE 531
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 134/305 (43%), Gaps = 48/305 (15%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS---- 60
S + LGN D + ++ + + WN +I G +++ ++I LF +M+ +
Sbjct: 218 SGYARLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALEGNNN 277
Query: 61 -----PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV 115
P+ T A G L +H + KT D FISN+L+ MYG CG++
Sbjct: 278 DRENKPNKTTLGSALSACGHTGMLHLGKWIHGYVFKTYPGQDSFISNALLDMYGKCGNLK 337
Query: 116 YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
AR VFD + K SWNS+++ A G A +F + + CGD
Sbjct: 338 VARRVFDMITLKNLTSWNSLINCLALHGHSGSAIDLFAEL---------------IHCGD 382
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQG----RMMLRYMIDKGLSLTLP 231
G K NEVT V VL AC H G +++G MM R D + +
Sbjct: 383 --------------GVKPNEVTFVGVLNACTHGGLVEKGYSYFEMMRR---DYDIEPQIE 425
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
LID+ + G +EA+ V G+ + D ++W +++ +HG + L ++ ++
Sbjct: 426 HFGCLIDLLGRAGRFEEAMEVVRGMNI-EPDEVVWGSLLNACKIHG--RSDLAEYSVKKL 482
Query: 292 VGITP 296
+ + P
Sbjct: 483 IEMDP 487
>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
Length = 606
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/442 (34%), Positives = 239/442 (54%), Gaps = 35/442 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+ ALS ++DY+C + L P F +NT+IRGY + N +I L+ ML+ V
Sbjct: 70 VLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVE 129
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+ TYP + KA RLA + + +H + K G E D+++ NSLI+MYG C DI + +
Sbjct: 130 PDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAI 189
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
F M K +V SWSA+I + + E L
Sbjct: 190 FRRMEQK-------------------------------SVASWSAIIAAHASLAMWWECL 218
Query: 181 VIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
+FE+M G +A E LV+VL AC HLGA GR ++ L + + TSL+DM
Sbjct: 219 ALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLMDM 278
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y KCG++++ L +F + + + L ++ +I GL +HG+ +++L++F+EM G+ PD++
Sbjct: 279 YVKCGSLQKGLCLFQNMTR--KNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDV 336
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
T++ +LSAC+H GLV E F + + + P +HY CMVD RAG + EA++ +
Sbjct: 337 TYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQS 396
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP++ + SLL+ C H L L EI + L L + Y+ LSN+YA ++W+ A
Sbjct: 397 MPIKANDVLWRSLLSACKVHDNLKLGEIAAENLFRLSSHNPSDYLVLSNMYARAQQWENA 456
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R M RG+ + PG+S VE
Sbjct: 457 AKIRTKMINRGLIQTPGYSLVE 478
>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
Length = 581
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 235/412 (57%), Gaps = 35/412 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WNT+I GY + PNK++ F +M++ V+ D +T AS + K ++ H+ +
Sbjct: 164 WNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCHSLVV 223
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
G + ++ +SLI MY AKCG + AR+
Sbjct: 224 VNGAGINCYMGSSLISMY-------------------------------AKCGLVEDARK 252
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
VF M ERNVV W+++I GY + G +KEA+ +F +M+ G K ++ T+ +V+ +CA +GA
Sbjct: 253 VFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGA 312
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
LD GR + Y GL L ++ SLIDMY+KCG I +A +F G+ K DV W AMI
Sbjct: 313 LDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKR--DVFSWTAMI 370
Query: 271 GGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RG 328
G ++G E+L+LF +M+ G + P+E+TFLG+L++C+HGGLV + +++F+ +
Sbjct: 371 MGFTVNGLCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYK 430
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
+ P+ EHY CMVD L RA +TEA +FI MP+ P + SLL C G++ LAE V
Sbjct: 431 LAPRIEHYGCMVDLLGRAKLLTEAEQFIKNMPIAPDVVVWRSLLFACRACGEVGLAEFVA 490
Query: 389 KKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++++EL+P +V LSNVYA RW + R +M+ + K PG SF+E
Sbjct: 491 ERILELEPKKCAGHVLLSNVYATTSRWVDVNELRTSMDNSRMSKQPGCSFIE 542
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 147/308 (47%), Gaps = 45/308 (14%)
Query: 59 VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
V+ D+ + A+ RL + +H+ K G SD F+ NSLI+MY S
Sbjct: 89 VTLDNYSLNIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSS-------- 140
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER--NVVSWSALIDGYVKCGDY 176
C ARQV + P+ + VSW+ +I GY++ G
Sbjct: 141 -----------------------CSYPATARQVLDSAPQGACDTVSWNTIISGYLRGGMP 177
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
+AL F +M ++VTL++ L A A G + GR+ ++ G + + +SL
Sbjct: 178 NKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCHSLVVVNGAGINCYMGSSL 237
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
I MYAKCG +++A VFHG+ H+ +V+ W +MI G G KE++ LF +MQI G+
Sbjct: 238 ISMYAKCGLVEDARKVFHGM--HERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKV 295
Query: 297 DEITFLGLLSACAHGGLV-----MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTE 351
D+ T ++S+CA G + + A+ LGK V S ++D S+ G + +
Sbjct: 296 DDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNS-----LIDMYSKCGDINK 350
Query: 352 AYEFICQM 359
A+E C +
Sbjct: 351 AHEIFCGL 358
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 121/285 (42%), Gaps = 48/285 (16%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + KV + + W ++I GY++ ++++LF M G+ D T +
Sbjct: 245 GLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVV 304
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ ++ +L VHA G +L + NSLI MY CGDI A E+F G+ +
Sbjct: 305 SSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVF 364
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW +A+I G+ G EAL +F +M G
Sbjct: 365 SW-------------------------------TAMIMGFTVNGLCSEALDLFAQMEGEG 393
Query: 191 S-KANEVTLVSVLCACAHLGALDQG-----RMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
NEVT + VL +C+H G ++QG RM + Y L+ + ++D+ +
Sbjct: 394 KVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYK----LAPRIEHYGCMVDLLGRAK 449
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMI------GGLAMHGFVKESL 283
+ EA + DV++W +++ G + + FV E +
Sbjct: 450 LLTEAEQFIKNMPI-APDVVVWRSLLFACRACGEVGLAEFVAERI 493
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 162/473 (34%), Positives = 246/473 (52%), Gaps = 42/473 (8%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S +G I+ + V S + + WN +I Y + K++++ M + D +T
Sbjct: 329 SKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLS 388
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ AS + +L H + ESD+ ++NS+I MY C I AR+VFD +
Sbjct: 389 SILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTER 448
Query: 128 MSVSWNSMLDGYAKCG-----------------------------------EMNMARQVF 152
V WN++L YA+ G ++N A+ +F
Sbjct: 449 DLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMF 508
Query: 153 ELMP----ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
M + N+++W+ LI G + G EA++ F++M++ G + + ++ SVL AC +
Sbjct: 509 SQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDI 568
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
+L GR + ++ L++P+ TSL+DMYAKCG+I EA VFH + ++ I+NA
Sbjct: 569 PSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSS--KELPIYNA 626
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKR 327
MI A+HG E+L LF +Q GI PD ITF +LSAC+H GLV E F + K
Sbjct: 627 MISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKH 686
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
M P EHY C+V LSR G + EA I MP +P A +LGSLLT C H +++L E +
Sbjct: 687 NMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYL 746
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
K L +L+P + G YV LSN YA RW E R+ M+ RG++K PG S+++
Sbjct: 747 SKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQ 799
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 145/296 (48%), Gaps = 33/296 (11%)
Query: 14 DYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS 73
+ + ++ L +F W ++ + ++ F++M GV PD+ P + KA
Sbjct: 133 EVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKAC 192
Query: 74 GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
G L L VH + K G+ + +F+S+SL+ MYG
Sbjct: 193 GSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYG------------------------ 228
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
KCG + AR+VF+ M E+NVV+W+++I GYV+ G +EA+ +F +MR G +
Sbjct: 229 -------KCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEP 281
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
VT+ S L A A+L AL +G+ I L L L +S+I+ Y+K G I++A +VF
Sbjct: 282 TRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVF 341
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ + DV+ WN +I H V ++L + M+ + D +T +LSA A
Sbjct: 342 SRML--EKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASA 395
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 167/371 (45%), Gaps = 38/371 (10%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + KV + + WN++I GY ++ ++I +F M G+ P +T
Sbjct: 231 GVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFL 290
Query: 71 KASGRLAKRELAVAVHAQI-AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
AS L A I K G+ + S L ++ GS
Sbjct: 291 SASANL---------DALIEGKQGHAIAILNSLDLDNILGS------------------- 322
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
S+++ Y+K G + A VF M E++VV+W+ LI YV+ +AL + MR
Sbjct: 323 ----SIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSE 378
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ + VTL S+L A A + G+ Y I + L + + S+IDMYAKC I +A
Sbjct: 379 NLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDA 438
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF + D+++WN ++ A G E+L+LF +MQ + P+ I++ ++
Sbjct: 439 RKVFDSTT--ERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFL 496
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTAS 366
G V EA F + G P + ++ L+++G EA F +M + P+ +
Sbjct: 497 RNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIA 556
Query: 367 MLGSLLTGCMN 377
+ S+L C +
Sbjct: 557 SITSVLLACTD 567
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
YAKC +A ++F + RNV SW+A++ + G ++AL+ F EM++ G + L
Sbjct: 126 YAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVL 185
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG-VE 257
+VL AC L + G+ + Y++ G + + +SL+DMY KCG +++A VF VE
Sbjct: 186 PNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVE 245
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
K +V+ WN+MI G +G +E++++F +M++ GI P +T LSA A+ ++E
Sbjct: 246 K---NVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIE 301
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 21/223 (9%)
Query: 167 IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG- 225
I K G +E++ + EM + +L C + AL G+ + ++ G
Sbjct: 51 ISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGD 110
Query: 226 -LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLE 284
+ ++T L+ YAKC + A+ +FH + +V W A++G GF +++L
Sbjct: 111 FFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVR--NVFSWAAIVGLQCRMGFSEDALL 168
Query: 285 LFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK--RGMVPKSEHYAC---- 338
F EMQ G+ PD +L AC L+ LGK G V K AC
Sbjct: 169 GFIEMQENGVFPDNFVLPNVLKACGSLQLI--------GLGKGVHGYVLKMGFGACVFVS 220
Query: 339 --MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+VD + G + +A + M +E S++ G + +G
Sbjct: 221 SSLVDMYGKCGVLEDARKVFDSM-VEKNVVTWNSMIVGYVQNG 262
>gi|296087990|emb|CBI35273.3| unnamed protein product [Vitis vinifera]
Length = 405
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 160/445 (35%), Positives = 241/445 (54%), Gaps = 77/445 (17%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
+NT+I S++ + S++ +V ML AG PD+ T+PFL K+S L +HA +
Sbjct: 2 FNTIIMASSRTLD---SVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHVV 58
Query: 91 KTGYESDLFISNSLIHMYGS--------------------------------CGDIVYAR 118
K G + D+F+ N++I +Y S G I AR
Sbjct: 59 KFGLDRDVFVVNNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEAR 118
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
++FD MP K +VSWN+M+ GYA +N AR++F+ MP+R+ SWSA++ GY + G E
Sbjct: 119 KIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNE 178
Query: 179 ALVIFEEMRDVGSK--ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
AL +F EM G K NE LVS + ACA L AL++GR + Y+ +K L +
Sbjct: 179 ALDLFMEMV-TGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRI-------- 229
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
N + GLA++G KE+L LF +MQ VG +P
Sbjct: 230 ------------------------------NVTLAGLALNGCGKEALALFWKMQFVGPSP 259
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEF 355
+ ITF+ LL+ C+H GL+ E + F + + G+ P+ +HY CMVD L RAG V EA +F
Sbjct: 260 NAITFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDF 319
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
+ +MP++P + + G+L+ C HG+++L E +GK+L++L+P H GRY L N++A +RW
Sbjct: 320 VEKMPMKPHSELWGALVGACRIHGQVELGEELGKRLIDLEPHHGGRYALLCNIFAAAQRW 379
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
D+ R+ + R V K PG S VE
Sbjct: 380 DDVAMVRDLEKGRKVLKNPGNSIVE 404
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 118/286 (41%), Gaps = 45/286 (15%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+ S G ID + K+ + WN +I GY+ S N++ LF +M PD
Sbjct: 106 TGFSNSGQIDEARKIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEM------PDRD 159
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
+ A SG ++Q+ DLF M GD + E
Sbjct: 160 AASWSAMVSG-----------YSQLGMCNEALDLF-------MEMVTGDKMIPNEA---- 197
Query: 125 PTKMSVSWNSMLDGYAKCGEMNM---ARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
+++ + C ++ R + + E+ + + + G G KEAL
Sbjct: 198 ---------ALVSAVSACAQLRALEEGRWLHSYIKEKK-LRINVTLAGLALNGCGKEALA 247
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMY 240
+F +M+ VG N +T +++L C+H G + +GR + M G+ L ++D+
Sbjct: 248 LFWKMQFVGPSPNAITFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLL 307
Query: 241 AKCGAIKEALIVFHGVE-KHQSDVLIWNAMIGGLAMHGFVKESLEL 285
+ G +KEAL + K S+ +W A++G +HG V+ EL
Sbjct: 308 GRAGLVKEALDFVEKMPMKPHSE--LWGALVGACRIHGQVELGEEL 351
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 158/420 (37%), Positives = 244/420 (58%), Gaps = 14/420 (3%)
Query: 27 RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVH 86
+ + NT++ YSK N N +I F KM + V +++ L A R + A+ +
Sbjct: 688 EVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTV----VSWTSLIAAYVREGLYDDAIRLF 743
Query: 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD-----GMPTKMSVSWNSMLDGYAK 141
++ G D++ S++H + R+V + M + VS N+++D YAK
Sbjct: 744 YEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVS-NALMDMYAK 802
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
CG M A VF +P +++VSW+ +I GY K EAL +F EM+ S+ + +T+ +
Sbjct: 803 CGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQK-ESRPDGITMACL 861
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
L AC L AL+ GR + ++ G S L + +LIDMY KCG++ A ++F + +
Sbjct: 862 LPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIP--EK 919
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
D++ W MI G MHG E++ F +M+I GI PDEITF +L AC+H GL+ E W FF
Sbjct: 920 DLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFF 979
Query: 322 KSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
S+ + M PK EHYACMVD L+R G +++AY I MP++P A++ G+LL GC H
Sbjct: 980 NSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHD 1039
Query: 381 LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++LAE V + + EL+PD+ G YV L+N+YA ++W+E + RE + RG+KK PG S++E
Sbjct: 1040 VELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIE 1099
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 166/350 (47%), Gaps = 34/350 (9%)
Query: 18 KVLSH-LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRL 76
++ H LS+ ++F WN ++ Y+K + +SI LF KM + G++ + T+ + K L
Sbjct: 507 RIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATL 566
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
+ +H + K G+ GS +V NS++
Sbjct: 567 GRVGECKRIHGCVYKLGF--------------GSYNTVV-----------------NSLI 595
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
Y K GE++ A ++F+ + +R+VVSW+++I G V G AL F +M + +
Sbjct: 596 ATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLA 655
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
TLV+ + ACA++G+L GR + + S + +L+DMY+KCG + +A+ F +
Sbjct: 656 TLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKM 715
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
Q V+ W ++I G +++ LF EM+ G++PD + +L ACA G + +
Sbjct: 716 --GQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDK 773
Query: 317 AWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
+ K M ++D ++ G + EAY Q+P++ S
Sbjct: 774 GRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVS 823
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 154/324 (47%), Gaps = 43/324 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+++ + V S + I WNT+I GYSK+ PN+++ LF +M + PD +T L
Sbjct: 804 GSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLL 862
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G LA E+ +H I + GY S+L ++N+LI MY CG +V+AR +FD +P K +
Sbjct: 863 PACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLI 922
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W M+ G CG + EA+ F++MR G
Sbjct: 923 TWTVMISG---CGMHGLG----------------------------NEAIATFQKMRIAG 951
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
K +E+T S+L AC+H G L++G MI + + L ++D+ A+ G + +A
Sbjct: 952 IKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKA 1011
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ + + D IW A++ G +H V E E E + + PD + LL A
Sbjct: 1012 YNLIETMPI-KPDATIWGALLCGCRIHHDV-ELAEKVAE-HVFELEPDNAGYYVLL---A 1065
Query: 310 HGGLVMEAWYFFKSL----GKRGM 329
+ E W K L GKRG+
Sbjct: 1066 NIYAEAEKWEEVKKLRERIGKRGL 1089
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
S+L CA L +G+M+ + G+ + L L+ MY CGA++E +F +
Sbjct: 456 SILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILS- 514
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
+ V +WN M+ A G +ES+ LF +MQ +GIT + TF +L A G V E
Sbjct: 515 DNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKR 574
Query: 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+ K G + ++ ++G+V A++ ++ S S+++GC+ +G
Sbjct: 575 IHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSW-NSMISGCVMNG 633
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 156/431 (36%), Positives = 234/431 (54%), Gaps = 10/431 (2%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V + + WN++I Y ++ +++ LFV+M+ AG SPD +T + A LA
Sbjct: 207 RVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLA 266
Query: 78 KRELAVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
VHA + K D+ ++N+L+ MY CG AR +FD MP++ VS S+L
Sbjct: 267 ADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSIL 326
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
GYAK + A+ VF M E+NV++W+ LI Y + G+ +EA+ +F +++
Sbjct: 327 TGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHY 386
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT------SLIDMYAKCGAIKEAL 250
T +VL AC ++ L G+ +++ +G ++ SL+DMY K G+I +
Sbjct: 387 TYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGA 446
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + D + WNAMI G A +G K++L LF M PD +T +G+LSAC H
Sbjct: 447 KVFERMAAR--DNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGH 504
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E +F S+ + G+ P +HY CMVD L RAG + EA E I MP+EP + +
Sbjct: 505 SGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWA 564
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL C H ++L E +L EL P + G YV LSN+YA +W E R +M+ RG
Sbjct: 565 SLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRG 624
Query: 430 VKKYPGWSFVE 440
V K PG S++E
Sbjct: 625 VSKQPGCSWIE 635
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 159/345 (46%), Gaps = 46/345 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S + LG + + +V + F +N ++ Y++ P+++ +LF A PD
Sbjct: 60 STYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALF----EAIPDPDQC 115
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISN--SLIHMYGSCGDIVYAR--EV 120
+Y + A R + A A+ A +D F+ N S +C +R E
Sbjct: 116 SYNAVVAALARHGRGHAADALRFLAA---MHADDFVLNAYSFASALSACAAEKDSRTGEQ 172
Query: 121 FDGM----PTKMSVSWNSML-DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
G+ P V S L D YAKC AR+VF+ MPERNVVSW++LI Y + G
Sbjct: 173 VHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGP 232
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQT 234
EAL++F EM G +EVTL SV+ ACA L A +GR + +M+ L + L
Sbjct: 233 VGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNN 292
Query: 235 SLIDMYAKCGAIKEALIVFH---------------------GVEKHQ--------SDVLI 265
+L+DMYAKCG EA +F VE Q +V+
Sbjct: 293 ALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIA 352
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
WN +I A +G +E++ LF +++ I P T+ +L+AC +
Sbjct: 353 WNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGN 397
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 155/319 (48%), Gaps = 14/319 (4%)
Query: 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
A A HA+I K+ + F+ N+L+ Y G + AR VFD +P + + S+N++L YA+
Sbjct: 36 ARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYAR 95
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKC--GDYKEALVIFEEMRDVGSKANEVTLV 199
G + AR +FE +P+ + S++A++ + G +AL M N +
Sbjct: 96 LGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFA 155
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
S L ACA G + + + + ++++L+DMYAKC ++A VF +
Sbjct: 156 SALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMP-- 213
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA-----HGGLV 314
+ +V+ WN++I +G V E+L LF EM G +PDE+T ++SACA G
Sbjct: 214 ERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQ 273
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
+ A + MV + +VD ++ G+ EA MP S S+LTG
Sbjct: 274 VHAHMVKCDRLRDDMVLNN----ALVDMYAKCGRTWEARCIFDSMPSRSIVSET-SILTG 328
Query: 375 CMNHGKLDLAEIVGKKLVE 393
++ A++V ++VE
Sbjct: 329 YAKSANVEDAQVVFSQMVE 347
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 152/327 (46%), Gaps = 42/327 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
N++ + V S + + WN +I Y+++ ++I LFV++ R + P H TY +
Sbjct: 333 ANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVL 392
Query: 71 KASGRLAKRELAVAVHAQIAKTGY------ESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
A G +A +L H + K G+ ESD+F+ NSL+ MY G I +VF+ M
Sbjct: 393 NACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERM 452
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ +VSWN+M+ GYA+ G K+AL +FE
Sbjct: 453 AARDNVSWNAMIVGYAQNGRA-------------------------------KDALHLFE 481
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKC 243
M + VT++ VL AC H G +D+GR M D G++ + T ++D+ +
Sbjct: 482 RMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRA 541
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G +KEA + + + + D ++W +++G +H V+ L +T ++ + P
Sbjct: 542 GHLKEAEELINDMPM-EPDSVLWASLLGACRLHKNVE--LGEWTAGRLFELDPQNSGPYV 598
Query: 304 LLSAC-AHGGLVMEAWYFFKSLGKRGM 329
LLS A G E + +S+ RG+
Sbjct: 599 LLSNMYAEMGKWAEVFRVRRSMKDRGV 625
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 155/435 (35%), Positives = 236/435 (54%), Gaps = 7/435 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
++D + + L+ S WN +I GY+ ++ +F KM+ + + D T+ +
Sbjct: 237 NDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVI 296
Query: 71 KASGRLAKRELAVAVHAQIAKT----GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
L +HA KT + + ++N+LI Y CG + A+E+F+ MP
Sbjct: 297 SVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPE 356
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ VSWN +L GY M+ A+ F MPE+N++SW +I G + G +EAL F M
Sbjct: 357 RDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRM 416
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ G + + + +C+ LG+L GR + ++ G +L +LI MYA+CG +
Sbjct: 417 KLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVV 476
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
A +F + D + WNAMI L HG +++ELF EM GI PD I+FL ++S
Sbjct: 477 DAAHCLF--INMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVIS 534
Query: 307 ACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC+H GLV E +F S+ G+ P EHYA ++D L RAG+ +EA E + MP EP A
Sbjct: 535 ACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGA 594
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
+ +LL GC HG +DL ++L EL+P HDG YV LSN+YA+ +W++ R+ M
Sbjct: 595 PIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLM 654
Query: 426 ETRGVKKYPGWSFVE 440
RGVKK PG S++E
Sbjct: 655 RDRGVKKEPGCSWIE 669
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/401 (24%), Positives = 176/401 (43%), Gaps = 45/401 (11%)
Query: 5 SALSYLGNIDYSCKVLSH--LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD 62
+A S G++ S K+ S L ++N +I YS + + + +I LF M R PD
Sbjct: 87 AAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPD 146
Query: 63 HLTYPFLAKASGRLAKRELAVA-VHAQIAKTGYESDLFISNSLIHMYGSCGD-------- 113
+ T+ + A +A++E +H + K+G + N+LI Y C
Sbjct: 147 NYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSS 206
Query: 114 -IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVK 172
+ AR++FD MP + +SW +++ GY K +++ A++ ++ V+W+A+I GY
Sbjct: 207 LMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAH 266
Query: 173 CGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI----DKGLSL 228
G Y EA +F +M + +E T SV+ CA+ G G+ M Y + + +
Sbjct: 267 RGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDV 326
Query: 229 TLPLQTSLIDMYAKCGAIKEALIVFHGV-----------------------------EKH 259
+P+ +LI Y KCG + A +F+ + E
Sbjct: 327 AMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMP 386
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
+ ++L W MI GLA GF +E+L+ F M++ G P + F G + +C+ G +
Sbjct: 387 EKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQ 446
Query: 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+ + G ++ +R G V A+ MP
Sbjct: 447 LHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMP 487
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 151/362 (41%), Gaps = 51/362 (14%)
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
LA VHA + +G++ I N LI +Y + YAR +FD +P V+ +++ Y+
Sbjct: 31 LARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYS 90
Query: 141 KCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
G++ ++R++F P R+ V ++A+I Y D A+ +F +M+ + + T
Sbjct: 91 AAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTF 150
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGA---------IKE 248
SVL A A + ++ L + K G + +LI Y KC A + E
Sbjct: 151 TSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAE 210
Query: 249 ALIVFHG----------------VEKHQSDV-------------LIWNAMIGGLAMHGFV 279
A +F V+ + D + WNAMI G A G
Sbjct: 211 ARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLY 270
Query: 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGLV-----MEAWYFFKSLGKRGMVPKSE 334
E+ E+F +M + I DE TF ++S CA+ G M A YF K++
Sbjct: 271 LEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHA-YFLKTVANPAPDVAMP 329
Query: 335 HYACMVDALSRAGQVTEAYEFICQMPLEPTAS----MLGSLLTGCMNHGKLDLAEIVGKK 390
++ + G+V A E +MP S + G + CM+ K E+ K
Sbjct: 330 VNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKN 389
Query: 391 LV 392
++
Sbjct: 390 IL 391
>gi|242063604|ref|XP_002453091.1| hypothetical protein SORBIDRAFT_04g038305 [Sorghum bicolor]
gi|241932922|gb|EES06067.1| hypothetical protein SORBIDRAFT_04g038305 [Sorghum bicolor]
Length = 514
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 162/446 (36%), Positives = 246/446 (55%), Gaps = 27/446 (6%)
Query: 20 LSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR--AGVSPDHLTYPFLAKASGR-- 75
SHL R F N ++R + +P ++ LF ++ R P++ T+ FL KA+
Sbjct: 32 FSHLLADR-FLPNQLLRSLIPA-HPLGALRLFPRLRRIFPDFRPNNYTFSFLLKAAADSS 89
Query: 76 ----------LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF-DGM 124
+ ++HA +++ +++N LIH Y + G + AR +F D +
Sbjct: 90 APPSLGPDYPFGAHAIVPSLHALAVVLAWDAHAYVANGLIHAYATHGVVPSARRLFEDAL 149
Query: 125 PTKMS--VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
++ + SW S+L AK G++ AR +F+ MP RN V+WSA++ YV G + +A+ +
Sbjct: 150 ASRAADVCSWTSLLTACAKAGQVEEARALFDGMPRRNDVAWSAMLSAYVAAGSFDDAVRL 209
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI------DKGLSLTLPLQTSL 236
FE+M G + N +V VL AC LGALDQGR + ++ D ++ + T+L
Sbjct: 210 FEDMLRSGVRPNRAAVVGVLAACGALGALDQGRWVHALLVSGTHGGDGATAMDGVVATAL 269
Query: 237 IDMYAKCGAIKEALIVFHGV-EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
+DMYAKCG++ A VF + Q DV + AMI GL+ HG E+++LF +MQ G+
Sbjct: 270 VDMYAKCGSLDTARQVFAAAAPRSQRDVFAYTAMISGLSDHGRCGEAIDLFGQMQAEGVR 329
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYE 354
P+E+TF+ +L+AC GLV A F+S+ GM P EHY C+VD L RAG + EA E
Sbjct: 330 PNEVTFICVLTACGRAGLVGRAKEVFRSMAAVHGMEPGVEHYGCLVDVLGRAGLLAEAME 389
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414
+ M + P A +LG+LL C HG ++ E V + L EL DH G +V LSN+YA + +
Sbjct: 390 TVRSMTMRPDAYVLGALLNACAAHGDVEAGEQVVRWLAELGLDHSGVHVQLSNMYAGWSK 449
Query: 415 WDEARTTREAMETRGVKKYPGWSFVE 440
W+E R M+ R V K PG S +E
Sbjct: 450 WEEVLKVRRTMDQRKVAKVPGCSMLE 475
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 159/511 (31%), Positives = 262/511 (51%), Gaps = 82/511 (16%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A S G+I ++ +V L P+IF WN +IRGYS++ + ++ ++ M A VSPD T
Sbjct: 62 ASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFT 121
Query: 66 YPFLAKASGRLAKRELA----------------------VAVHAQIAKTGYESDLFIS-- 101
+P L KA L+ ++ +A++A+ + G +F
Sbjct: 122 FPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLP 181
Query: 102 ---------NSLIHMYGSCGDIVYAREVFDGMPTKMSV---------------------- 130
+++ Y G+ + A E+F M KM V
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSHM-RKMDVKPDWVALVSVLNAFTCLQDLKQ 240
Query: 131 ---------------------SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDG 169
S N+M YAKCG++ A+ +F+ M N++ W+A+I G
Sbjct: 241 GRSIHASVVKMGLEIEPDLLISLNTM---YAKCGQVATAKILFDKMKSPNLILWNAMISG 297
Query: 170 YVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229
Y K G +EA+ +F EM + + + +++ S + ACA +G+L+Q R M Y+
Sbjct: 298 YAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDD 357
Query: 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
+ + ++LIDM+AKCG+++ A +VF DV++W+AMI G +HG +E++ L+ M
Sbjct: 358 VFISSALIDMFAKCGSVEGARLVFD--RTLDRDVVVWSAMIVGYGLHGRAREAISLYRAM 415
Query: 290 QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQV 349
+ G+ P+++TFLGLL AC H G+V E W+FF + + P+ +HYAC++D L RAG +
Sbjct: 416 ERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHL 475
Query: 350 TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409
+AYE I MP++P ++ G+LL+ C H ++L E ++L + P + G YV LSN+Y
Sbjct: 476 DQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLY 535
Query: 410 AIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
A + WD R M+ +G+ K G S+VE
Sbjct: 536 AAARLWDRVAEVRVRMKEKGLNKDVGCSWVE 566
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 159/368 (43%), Gaps = 75/368 (20%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG- 143
+HA++ G + F+ LIH S GDI +AR+VFD +P WN+++ GY++
Sbjct: 40 IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNH 99
Query: 144 ---------EMNMAR-----------------------------QVFELMPERNVVSWSA 165
M +AR QVF L + +V +
Sbjct: 100 FQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNG 159
Query: 166 LIDGYVKC---------------------------------GDYKEALVIFEEMRDVGSK 192
LI Y KC G+ EAL IF MR + K
Sbjct: 160 LIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVK 219
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ V LVSVL A L L QGR + ++ GL + L SL MYAKCG + A I+
Sbjct: 220 PDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKIL 279
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F ++ ++++WNAMI G A +G+ +E++++F EM + PD I+ +SACA G
Sbjct: 280 FDKMKS--PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
+ +A ++ +G+ + ++D ++ G V E + L+ + +++
Sbjct: 338 SLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV-EGARLVFDRTLDRDVVVWSAMI 396
Query: 373 TGCMNHGK 380
G HG+
Sbjct: 397 VGYGLHGR 404
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 155/401 (38%), Positives = 230/401 (57%), Gaps = 66/401 (16%)
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGS------------- 110
+TYPF+ KA + + VH + K+G+E D +I +SLIH+Y +
Sbjct: 1 MTYPFVIKACNESSVTWFGLLVHTHV-KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNL 59
Query: 111 C------------------GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVF 152
C G++ +AR VFD M + +SWN+M++GYA G+++ A+++F
Sbjct: 60 CSDRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLF 119
Query: 153 ELMPERNVVSWSALIDGYVKCGDYK-------------------------------EALV 181
+ MPERN+VS ++++ G+VKCG+ + EAL
Sbjct: 120 DEMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALA 179
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+F++M VG K +E T+VS+L ACAHLGALD+G + Y+ D + + + T+L+DMYA
Sbjct: 180 LFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYA 239
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
KCG I A VF+ +E DVL WN +I G+A+ G VKE+ +LF EM+ G+ P++ITF
Sbjct: 240 KCGKISLATQVFNAME--SKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITF 297
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+ +LSAC+H G+V E + G+ PK EHY C++D L+RAG + EA E I MP
Sbjct: 298 VAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMP 357
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR 401
+EP LG+LL GC HG +L E+VGK+L+ LQP GR
Sbjct: 358 MEPNPCALGALLGGCRIHGNFELGEMVGKRLINLQPCQSGR 398
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 131/268 (48%), Gaps = 33/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN++ + + S + + WN+++ Y++ PN++++LF +M GV P T L
Sbjct: 141 GNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSEATVVSLL 200
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L + + +H I E + + +L+ MY CG I A +VF+ M +K +
Sbjct: 201 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 260
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WN+++ G A I G+VK EA +F+EM++ G
Sbjct: 261 AWNTIIAGMA--------------------------ILGHVK-----EAQQLFKEMKEAG 289
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
+ N++T V++L AC+H G +D+G+ +L M G+ + +ID+ A+ G ++EA
Sbjct: 290 VEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEA 349
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
+ + G + + A++GG +HG
Sbjct: 350 MELI-GTMPMEPNPCALGALLGGCRIHG 376
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 158/433 (36%), Positives = 244/433 (56%), Gaps = 36/433 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + ++ KV + + + WN++I GYSK ++I LF++M G PD +T +
Sbjct: 177 GEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVL 236
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G L L V + + E + ++ ++LI MYG
Sbjct: 237 GACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYG--------------------- 275
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
KCG++ AR+VF+ MP ++VV+W+A+I GY + G EA+V+F MR+ G
Sbjct: 276 ----------KCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAG 325
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ VT++ VL AC+ +GALD G+ + + +KGL + + ++LIDMYAKCG++ +A+
Sbjct: 326 PHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAV 385
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG--ITPDEITFLGLLSAC 308
VF + H+++V WNAMI LA HG +E+L LF M + P++ITF+G+LSAC
Sbjct: 386 RVFESM-PHKNEV-SWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSAC 443
Query: 309 AHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
H GLV E F+S+ G+VPK EHY+CMVD +RAG + EA++ I +MP +P +
Sbjct: 444 VHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIV 503
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
LGSLL C D+ E V + +E++ + G YV S +YA +RWD++ R M
Sbjct: 504 LGSLLGACQRRRNADVGERVIQLFLEMELSNSGNYVISSKIYANMRRWDDSAKMRVLMRQ 563
Query: 428 RGVKKYPGWSFVE 440
GV K PG S+++
Sbjct: 564 CGVSKTPGCSWID 576
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 126/428 (29%), Positives = 215/428 (50%), Gaps = 40/428 (9%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKS-KNPNKSISLFVKMLRAGVSPD 62
S + L ++ Y+ V + L+ P I+ +N ++RG + + K + + L+ K+ G+ +
Sbjct: 68 LSKIIDLKDLAYASLVFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKAN 127
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
+ TYPFL A G + H + K G + D ++++SLI MY
Sbjct: 128 NFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMY-------------- 173
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
A+CGEM AR+VF+ M +R++VSW+++I GY K G KEA+ +
Sbjct: 174 -----------------ARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGL 216
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F EMR+ G + +E+TLVSVL AC LG L GR + ++++K + + + ++LIDMY K
Sbjct: 217 FMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGK 276
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG + A VF + DV+ WNA+I G A +G E++ LF M+ G PD +T +
Sbjct: 277 CGDLISARRVFDSMP--NKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMI 334
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+LSAC+ G + + ++G+ + ++D ++ G + +A MP +
Sbjct: 335 EVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHK 394
Query: 363 PTASMLGSLLTGCMNHGK----LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
S ++++ HG+ L L + K +QP+ D ++G+ + DE
Sbjct: 395 NEVS-WNAMISALAFHGQAQEALSLFRRMSKDNGTVQPN-DITFIGVLSACVHAGLVDEG 452
Query: 419 RTTREAME 426
R E+M
Sbjct: 453 RQLFESMN 460
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 154/436 (35%), Positives = 248/436 (56%), Gaps = 5/436 (1%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTY 66
++LG +D + + + + I WN +I GY+++ K++ LF +ML + ++PD T
Sbjct: 241 THLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTI 300
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD-GMP 125
+ A L + VHA I +T + ++N+LI Y G + AR + D M
Sbjct: 301 TSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSME 360
Query: 126 TKMSV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
T ++V S+ ++L+GY K G+M AR++F +M R+VV+W+A+I GY + G EA+ +F
Sbjct: 361 TDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFR 420
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M G + N TL +VL CA L LD G+ + I L + + ++I MYA+ G
Sbjct: 421 SMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSG 480
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+ A +F V + + + W +MI LA HG +E++ LF EM G+ PD IT++G+
Sbjct: 481 SFPWARRMFDQV-CWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGV 539
Query: 305 LSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LSAC+H G V E ++ + + + P+ HYACMVD L+RAG +EA EFI +MP+EP
Sbjct: 540 LSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEP 599
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
A GSLL+ C H +LAE+ +KL+ + P++ G Y ++NVY+ RW +A +
Sbjct: 600 DAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWK 659
Query: 424 AMETRGVKKYPGWSFV 439
A + + V+K G+S+
Sbjct: 660 ARKEKAVRKETGFSWT 675
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 152/311 (48%), Gaps = 32/311 (10%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W ++ G +++ ++I + M G +P T + + + VH+ +
Sbjct: 132 WTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVV 191
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G S + ++NS+++MYG CGD A VF+ MP + SWN+M+ G M++A
Sbjct: 192 KLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAES 251
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA-NEVTLVSVLCACAHLG 209
+FE MP+R++VSW+A+I GY + G +AL +F M S A +E T+ SVL ACA+LG
Sbjct: 252 LFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLG 311
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA-------------LIVFHGV 256
+ G+ + Y++ ++ + +LI YAK G+++ A +I F +
Sbjct: 312 NVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTAL 371
Query: 257 EK------------------HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
+ + DV+ W AMI G +G E+++LF M G P+
Sbjct: 372 LEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNS 431
Query: 299 ITFLGLLSACA 309
T +LS CA
Sbjct: 432 YTLAAVLSVCA 442
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 156/339 (46%), Gaps = 37/339 (10%)
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGS----CGDIVYAREVFDGMP--TKMSVSWNSMLD 137
A+HA+ K G + ++ N+L+ YG G + AR +FD +P + +WNS+L
Sbjct: 47 AIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLLS 106
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
+AK G + AR VF MPER+ VSW+ ++ G + G + EA+ +M G + T
Sbjct: 107 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 166
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH--- 254
L +VL +CA A GR + +++ GL +P+ S+++MY KCG + A VF
Sbjct: 167 LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 226
Query: 255 -----------GVEKH---------------QSDVLIWNAMIGGLAMHGFVKESLELFTE 288
+ H ++ WNAMI G +G ++L+LF+
Sbjct: 227 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 286
Query: 289 M-QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347
M + PDE T +LSACA+ G V + + M S+ ++ +++G
Sbjct: 287 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 346
Query: 348 QVTEAYEFICQ-MPLEPTASMLGSLLTGCMNHGKLDLAE 385
V A + Q M + +LL G + G ++ A
Sbjct: 347 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAR 385
>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
Length = 788
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 157/430 (36%), Positives = 245/430 (56%), Gaps = 2/430 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D + +VL + W T+I + + N +++ L+ +ML G P+ + +
Sbjct: 327 GDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVL 386
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L +HA+ K G +++F+S SLI MY C A+ +FD +P K V
Sbjct: 387 SACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIV 446
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
WNS++ GY+ G+M A +F+ MP RN+ SW+ +I GY + + +AL F M G
Sbjct: 447 CWNSLVSGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASG 506
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
E+T SVL ACA+L +L G+M I G+ ++ + T+L DMYAK G ++ +
Sbjct: 507 QVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSK 566
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F+ + + ++DV W AMI GLA +GF +ES+ LF +M G+TP+E TFL LL AC+H
Sbjct: 567 RMFYQMPE-RNDV-TWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSH 624
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GGLV +A ++F + G+ PK +HY CMVD L+RAG++ EA + + P + A+ +
Sbjct: 625 GGLVEQAIHYFDKMQALGISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSEANSWAA 684
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL+ C + ++AE K+L EL D+ YV LSN+YA RW +A R M+ +
Sbjct: 685 LLSACNTYRNEEIAERAAKRLHELAKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTL 744
Query: 431 KKYPGWSFVE 440
KK G S+V+
Sbjct: 745 KKDGGCSWVQ 754
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 186/376 (49%), Gaps = 29/376 (7%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
AL G + + ++ + + ++ I G+ +++ + ++ +F KML V P+ +T
Sbjct: 189 ALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMLSCRVRPNGIT 248
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
+ KA + LA+++ K+ + ES + + NSLI +Y GD AR+VFD M
Sbjct: 249 IVCMIKACVGAGEFGLALSIVGLAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEM 308
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
K VSW ++LD Y++ G+++ AR+V + MPERN VSW LI + + G+ EA+ ++
Sbjct: 309 DVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYS 368
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+M G + N SVL ACA L L G + + G S + + SLIDMY KC
Sbjct: 369 QMLADGCRPNISCFSSVLSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCN 428
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+A +F + Q +++ WN+++ G + +G + E++ LF +M + ++ +
Sbjct: 429 KCGDAQTIFDTLP--QKNIVCWNSLVSGYSYNGKMVEAMYLFKKMPARNLA----SWNTI 482
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
+S A ++A F ++ G VP G++T + +
Sbjct: 483 ISGYAQNRQFVDALKSFNAMLASGQVP---------------GEITFSSVLL-------A 520
Query: 365 ASMLGSLLTGCMNHGK 380
+ L SL+TG M H K
Sbjct: 521 CANLCSLVTGKMAHAK 536
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 135/302 (44%), Gaps = 49/302 (16%)
Query: 47 SISLFVKMLRAGVSPD-----HL--TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
++SL +R+GV+ D HL TY A+A+ R R V A A + + D
Sbjct: 99 ALSLHAHAVRSGVAADRSVASHLLTTYAAFARAAER--DRAFGDCVAAD-AASPFAYDFM 155
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
+S + GDI AR +FDGMP + VS+ +M+D K G + A +++E P +
Sbjct: 156 VSEHV-----KAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGS 210
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
V ++A I G+V+ + AL +F +M + N +T+V ++ AC G ++
Sbjct: 211 VAFFTATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVG 270
Query: 220 YMIDKG-LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI------GG 272
I ++ +Q SLI +Y + G A VF E DV+ W A++ G
Sbjct: 271 LAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFD--EMDVKDVVSWTALLDVYSESGD 328
Query: 273 L----------------------AMH---GFVKESLELFTEMQIVGITPDEITFLGLLSA 307
L A H G E+++L+++M G P+ F +LSA
Sbjct: 329 LDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSA 388
Query: 308 CA 309
CA
Sbjct: 389 CA 390
>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 231/428 (53%), Gaps = 1/428 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + ++ + + + W T+I GY + +++ ++ ML+ G P+ + L
Sbjct: 265 GLVDEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLV 324
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A GR +H + K G++ FI ++I+ Y +CG + A F+
Sbjct: 325 SACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDHLE 384
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN++ G+ K G M+ A + F+ M R+V SWS +I GY + K AL +F +M G
Sbjct: 385 SWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLAGG 444
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K NEVT+VSV A A LG L +G++ YM + + L+ +LIDMYAKCG+I AL
Sbjct: 445 IKPNEVTMVSVFSAIATLGTLQEGKLAHEYMRSESIPFNDNLRAALIDMYAKCGSINSAL 504
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
F+ + S V WNA+I GLA HG LE+F++MQ I P+ ITF+G+LSAC H
Sbjct: 505 QFFNQIRDEVSSVSPWNAIICGLASHGHASMCLEVFSDMQRFHIKPNPITFIGVLSACCH 564
Query: 311 GGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV FK++ V P +HY CM+D L RAG + EA E I MP+E + G
Sbjct: 565 AGLVESGKRIFKTMKSAYNVEPDIKHYGCMIDILGRAGLLEEAEEMIRSMPMEADIVIWG 624
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C HG +++ E + L L P H G V LSN+YA +W+E R M+ +
Sbjct: 625 TLLAACRTHGNVNIGERAAENLARLAPSHGGGKVLLSNIYANAGKWEEVSFVRSVMQGQT 684
Query: 430 VKKYPGWS 437
+ + PG+S
Sbjct: 685 MDREPGYS 692
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 191/399 (47%), Gaps = 30/399 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ID + K+ + N + T+I G+ ++ +++ +F M GV P+ LT +
Sbjct: 133 GQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVI 192
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L + VH + K + +S +L+H Y C + AR +FD MP + V
Sbjct: 193 SACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNLV 252
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WN ML+GYAK G ++ AR++F+ + +++V+SW +IDGY++ G +EAL I+ M G
Sbjct: 253 TWNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTG 312
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
NEV +V+++ AC A+ G + ++ +G +QT++I YA CG + A
Sbjct: 313 HGPNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLAC 372
Query: 251 IVFH-GVEKHQS----------------------------DVLIWNAMIGGLAMHGFVKE 281
+ F GV+ H DV W+ MI G A K
Sbjct: 373 LQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKM 432
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
+LELF +M GI P+E+T + + SA A G + E + + + A ++D
Sbjct: 433 ALELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQEGKLAHEYMRSESIPFNDNLRAALID 492
Query: 342 ALSRAGQVTEAYEFICQMPLE-PTASMLGSLLTGCMNHG 379
++ G + A +F Q+ E + S +++ G +HG
Sbjct: 493 MYAKCGSINSALQFFNQIRDEVSSVSPWNAIICGLASHG 531
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 149/275 (54%), Gaps = 33/275 (12%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+H+ I K G + FI NSLI+MY CGDI A+ +FDG T SVS N M+ GY + G+
Sbjct: 75 IHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLFDGFATLDSVSCNIMVSGYVRNGQ 134
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
++ AR++F++MP + VS++ +I G+V+ G ++EAL +F++MR G N++TLV+V+ A
Sbjct: 135 IDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISA 194
Query: 205 CAHLGALDQGRMM-------------------------------LRYMIDKGLSLTLPLQ 233
C+HLG + RM+ R + D+ L
Sbjct: 195 CSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNLVTW 254
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
+++ YAK G + EA +F G+ DV+ W MI G G ++E+LE++ M G
Sbjct: 255 NVMLNGYAKTGLVDEARELFDGI--CDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTG 312
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328
P+E+ + L+SAC G +++ W ++ KRG
Sbjct: 313 HGPNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRG 347
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 29/152 (19%)
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+E+ LVS L +C+ L + QGR + + GL +Q SLI+MYAKCG IK A ++F
Sbjct: 52 SELALVSALKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLF 111
Query: 254 HG----------------VEKHQSD-------------VLIWNAMIGGLAMHGFVKESLE 284
G V Q D + + MI G +GF +E+LE
Sbjct: 112 DGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALE 171
Query: 285 LFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
+F +M+ G+ P+++T + ++SAC+H G V+
Sbjct: 172 VFKDMRSCGVVPNDLTLVNVISACSHLGEVLN 203
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 154/436 (35%), Positives = 248/436 (56%), Gaps = 5/436 (1%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTY 66
++LG +D + + + + I WN +I GY+++ K++ LF +ML + ++PD T
Sbjct: 135 THLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTI 194
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD-GMP 125
+ A L + VHA I +T + ++N+LI Y G + AR + D M
Sbjct: 195 TSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSME 254
Query: 126 TKMSV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
T ++V S+ ++L+GY K G+M AR++F +M R+VV+W+A+I GY + G EA+ +F
Sbjct: 255 TDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFR 314
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M G + N TL +VL CA L LD G+ + I L + + ++I MYA+ G
Sbjct: 315 SMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSG 374
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+ A +F V + + + W +MI LA HG +E++ LF EM G+ PD IT++G+
Sbjct: 375 SFPWARRMFDQV-CWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGV 433
Query: 305 LSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LSAC+H G V E ++ + + + P+ HYACMVD L+RAG +EA EFI +MP+EP
Sbjct: 434 LSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEP 493
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
A GSLL+ C H +LAE+ +KL+ + P++ G Y ++NVY+ RW +A +
Sbjct: 494 DAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWK 553
Query: 424 AMETRGVKKYPGWSFV 439
A + + V+K G+S+
Sbjct: 554 ARKEKAVRKETGFSWT 569
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 152/311 (48%), Gaps = 32/311 (10%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W ++ G +++ ++I + M G +P T + + + VH+ +
Sbjct: 26 WTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVV 85
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G S + ++NS+++MYG CGD A VF+ MP + SWN+M+ G M++A
Sbjct: 86 KLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAES 145
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA-NEVTLVSVLCACAHLG 209
+FE MP+R++VSW+A+I GY + G +AL +F M S A +E T+ SVL ACA+LG
Sbjct: 146 LFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLG 205
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA-------------LIVFHGV 256
+ G+ + Y++ ++ + +LI YAK G+++ A +I F +
Sbjct: 206 NVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTAL 265
Query: 257 EK------------------HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
+ + DV+ W AMI G +G E+++LF M G P+
Sbjct: 266 LEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNS 325
Query: 299 ITFLGLLSACA 309
T +LS CA
Sbjct: 326 YTLAAVLSVCA 336
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 124/277 (44%), Gaps = 31/277 (11%)
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
+AK G + AR VF MPER+ VSW+ ++ G + G + EA+ +M G + TL
Sbjct: 2 FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH---- 254
+VL +CA A GR + +++ GL +P+ S+++MY KCG + A VF
Sbjct: 62 TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121
Query: 255 ----------GVEKH---------------QSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
+ H ++ WNAMI G +G ++L+LF+ M
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181
Query: 290 -QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQ 348
+ PDE T +LSACA+ G V + + M S+ ++ +++G
Sbjct: 182 LHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGS 241
Query: 349 VTEAYEFICQ-MPLEPTASMLGSLLTGCMNHGKLDLA 384
V A + Q M + +LL G + G ++ A
Sbjct: 242 VENARRIMDQSMETDLNVISFTALLEGYVKIGDMESA 278
>gi|414886077|tpg|DAA62091.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 656
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 152/427 (35%), Positives = 236/427 (55%), Gaps = 2/427 (0%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPFLAK 71
ID + +V + W T+I GY + + ++ +V+M+ G + + L K
Sbjct: 226 IDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVLLVDLMK 285
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A R + +H I K G+++ F+ +L+H YG CG I A+ F + S
Sbjct: 286 ACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTAS 345
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
WN++L + G + AR++F+ MPER+ VSWS +I GYV+ G AL +F M +
Sbjct: 346 WNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTSI 405
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ NEVTL S L A A G LDQG+ + Y++++ + LT L + LIDMYAKCG+I +A+
Sbjct: 406 EPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAKCGSIADAVQ 465
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
F+ V S V WNAMI LA+HG+ SL+LF+++Q I P+ ITF+G+LSAC H
Sbjct: 466 FFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSACCHA 525
Query: 312 GLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
G V + Y+F+S+ + G+ P +HY CMVD L RAG + EA + + MP++P + GS
Sbjct: 526 GTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPMKPDVVIWGS 585
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
+L+ G + L E ++L +L H + LSN+YA W R+ ++ +
Sbjct: 586 ILSASRAQGNVALGERAAEELAKLDQTHGASKIALSNIYADAGHWINVSVVRKELQDANL 645
Query: 431 KKYPGWS 437
++ G S
Sbjct: 646 ERLTGRS 652
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/422 (26%), Positives = 197/422 (46%), Gaps = 47/422 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRI----FYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
+AL+ G +D + +L + PRI + T++ ++++ + +++++F ML V
Sbjct: 83 LAALTRAGYLDRAQGLLEEM--PRIHRDAVSYTTLVTSFARAGHAARAVAVFRSMLSENV 140
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T A R +H + + + ++ +L+H Y ++ AR
Sbjct: 141 VPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYAGVLELCSARA 200
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY-KE 178
+FDGM + +V+WN ML+GY K ++MA +VF +PER+ VSW LIDGY+ C D +
Sbjct: 201 LFDGMTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYI-CADLISD 259
Query: 179 ALVIFEEM-RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
A+ + +M +VG+ EV LV ++ ACA A+ +G+ + ++ G +Q +L+
Sbjct: 260 AMKAYVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLV 319
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM-------- 289
Y CG I A + F +K S WNA++ L +G ++E+ ELF +M
Sbjct: 320 HFYGCCGLIGLAQMTFRLSDK--SHTASWNALLAALLRNGLIREARELFDDMPERDTVSW 377
Query: 290 --QIVG---------------------ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
I G I P+E+T LSA A G + + + +
Sbjct: 378 STMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMN 437
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-----PLEPTASMLGSLLTGCMNHGKL 381
R + + ++D ++ G + +A +F ++ + P +M+ SL H L
Sbjct: 438 RPVQLTDNLSSGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSL 497
Query: 382 DL 383
DL
Sbjct: 498 DL 499
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 135/298 (45%), Gaps = 17/298 (5%)
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSC-GDIVYAREVFDGM 124
PFL + R A+ +HA AK+G S++F+ NS++ Y + A ++FD
Sbjct: 10 PFLVASLKRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSSLASALQLFDET 69
Query: 125 PTKM--SVSWNSMLDGYAKCGEMNMARQVFELMPE--RNVVSWSALIDGYVKCGDYKEAL 180
P + + + NS+L + G ++ A+ + E MP R+ VS++ L+ + + G A+
Sbjct: 70 PPPLRDATARNSVLAALTRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTSFARAGHAARAV 129
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F M NE TL + A A GA M+ + + + L + + T+L+ Y
Sbjct: 130 AVFRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAY 189
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
A + A +F G+ + + WN M+ G + + E+F + DE++
Sbjct: 190 AGVLELCSARALFDGMTYR--NTVTWNVMLNGYVKAKMIDMAAEVFWRIP----ERDEVS 243
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD---ALSRAGQVTEAYEF 355
+L L+ L+ +A + + G V +++ +VD A +R VTE +
Sbjct: 244 WLTLIDGYICADLISDAMKAYVQM--VGEVGANDYEVLLVDLMKACARYSAVTEGQQL 299
>gi|414886078|tpg|DAA62092.1| TPA: hypothetical protein ZEAMMB73_488923 [Zea mays]
Length = 714
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 152/427 (35%), Positives = 236/427 (55%), Gaps = 2/427 (0%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPFLAK 71
ID + +V + W T+I GY + + ++ +V+M+ G + + L K
Sbjct: 226 IDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVLLVDLMK 285
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A R + +H I K G+++ F+ +L+H YG CG I A+ F + S
Sbjct: 286 ACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTAS 345
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
WN++L + G + AR++F+ MPER+ VSWS +I GYV+ G AL +F M +
Sbjct: 346 WNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTSI 405
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ NEVTL S L A A G LDQG+ + Y++++ + LT L + LIDMYAKCG+I +A+
Sbjct: 406 EPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAKCGSIADAVQ 465
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
F+ V S V WNAMI LA+HG+ SL+LF+++Q I P+ ITF+G+LSAC H
Sbjct: 466 FFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSACCHA 525
Query: 312 GLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
G V + Y+F+S+ + G+ P +HY CMVD L RAG + EA + + MP++P + GS
Sbjct: 526 GTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPMKPDVVIWGS 585
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
+L+ G + L E ++L +L H + LSN+YA W R+ ++ +
Sbjct: 586 ILSASRAQGNVALGERAAEELAKLDQTHGASKIALSNIYADAGHWINVSVVRKELQDANL 645
Query: 431 KKYPGWS 437
++ G S
Sbjct: 646 ERLTGRS 652
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 110/422 (26%), Positives = 197/422 (46%), Gaps = 47/422 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRI----FYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
+AL+ G +D + +L + PRI + T++ ++++ + +++++F ML V
Sbjct: 83 LAALTRAGYLDRAQGLLEEM--PRIHRDAVSYTTLVTSFARAGHAARAVAVFRSMLSENV 140
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T A R +H + + + ++ +L+H Y ++ AR
Sbjct: 141 VPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYAGVLELCSARA 200
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY-KE 178
+FDGM + +V+WN ML+GY K ++MA +VF +PER+ VSW LIDGY+ C D +
Sbjct: 201 LFDGMTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYI-CADLISD 259
Query: 179 ALVIFEEM-RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
A+ + +M +VG+ EV LV ++ ACA A+ +G+ + ++ G +Q +L+
Sbjct: 260 AMKAYVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLV 319
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM-------- 289
Y CG I A + F +K S WNA++ L +G ++E+ ELF +M
Sbjct: 320 HFYGCCGLIGLAQMTFRLSDK--SHTASWNALLAALLRNGLIREARELFDDMPERDTVSW 377
Query: 290 --QIVG---------------------ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
I G I P+E+T LSA A G + + + +
Sbjct: 378 STMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMN 437
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-----PLEPTASMLGSLLTGCMNHGKL 381
R + + ++D ++ G + +A +F ++ + P +M+ SL H L
Sbjct: 438 RPVQLTDNLSSGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSL 497
Query: 382 DL 383
DL
Sbjct: 498 DL 499
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 135/298 (45%), Gaps = 17/298 (5%)
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSC-GDIVYAREVFDGM 124
PFL + R A+ +HA AK+G S++F+ NS++ Y + A ++FD
Sbjct: 10 PFLVASLKRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSSLASALQLFDET 69
Query: 125 PTKM--SVSWNSMLDGYAKCGEMNMARQVFELMPE--RNVVSWSALIDGYVKCGDYKEAL 180
P + + + NS+L + G ++ A+ + E MP R+ VS++ L+ + + G A+
Sbjct: 70 PPPLRDATARNSVLAALTRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTSFARAGHAARAV 129
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F M NE TL + A A GA M+ + + + L + + T+L+ Y
Sbjct: 130 AVFRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAY 189
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
A + A +F G+ + + WN M+ G + + E+F + DE++
Sbjct: 190 AGVLELCSARALFDGMTYR--NTVTWNVMLNGYVKAKMIDMAAEVFWRIP----ERDEVS 243
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD---ALSRAGQVTEAYEF 355
+L L+ L+ +A + + G V +++ +VD A +R VTE +
Sbjct: 244 WLTLIDGYICADLISDAMKAYVQM--VGEVGANDYEVLLVDLMKACARYSAVTEGQQL 299
>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Vitis vinifera]
Length = 685
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 149/439 (33%), Positives = 248/439 (56%), Gaps = 5/439 (1%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S + G ++ + ++ SN + WN++I GY + +++ LF M R GV D+
Sbjct: 246 ISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDY 305
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T+ + A L + + VHA + K G+ +D+ I ++L+ MY C A ++F
Sbjct: 306 STFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSD 365
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+ ++ NSM+ Y+ CG ++ ARQ+F+ MP ++++SW+++I G+ + EAL +F
Sbjct: 366 LQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLF 425
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
EM +G + ++ +L V+ ACA + +L+ G + GL + TSL+D Y KC
Sbjct: 426 CEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKC 485
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G ++ +F + K SD + WN+M+ G A +G E+L +F +M+ VG+ P +ITF+G
Sbjct: 486 GLVEHGRKLFDRMMK--SDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVG 543
Query: 304 LLSACAHGGLVMEA--WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+LSAC H GLV E W++ L + P EHY+CMVD +RAG + +A I QMPL
Sbjct: 544 VLSACDHCGLVEEGRKWFYAMKLDYH-INPGIEHYSCMVDLYARAGLLEDAMNLIEQMPL 602
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
+ SM S+L GC+ HG L + V K++++L P++ G YV LS +YA F+ W +
Sbjct: 603 KADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQV 662
Query: 422 REAMETRGVKKYPGWSFVE 440
R+ M + + K PG S+ +
Sbjct: 663 RKLMYDKKIPKVPGCSWAD 681
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 168/341 (49%), Gaps = 38/341 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP-- 61
S + GN++ + ++ + + WN++I GY+ + P +++ LF + ++P
Sbjct: 111 ISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDL---SLNPLE 167
Query: 62 ----DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYA 117
D + A L + +HA+I E D + +SL+++YG CGDI A
Sbjct: 168 RFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSA 227
Query: 118 REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
V + M + S ++++ GYA CG MN AR++F L VV W+++I GYV +
Sbjct: 228 NHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEAL 287
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
EAL +F MR G + + T SVL AC+ LG +DQG + ++ G + + + ++L+
Sbjct: 288 EALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALV 347
Query: 238 DMYAKCGAIKEALIVFHGVEKHQS-----------------------------DVLIWNA 268
DMY+KC +A +F ++ + + ++ WN+
Sbjct: 348 DMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNS 407
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
MI G + + E+L+LF EM +G+ D+ + G++SACA
Sbjct: 408 MIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACA 448
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 159/328 (48%), Gaps = 39/328 (11%)
Query: 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
+ + F N++I Y G + E+FD MP K + SWN ++ G+AK G + +AR++F
Sbjct: 70 KRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNE 129
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEM------RDVGSKANEVTLVSVLCACAHL 208
MP +N ++W+++I GY G KEA+ +F+++ R G + L +V+ AC +L
Sbjct: 130 MPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCG---DTFVLATVVGACTNL 186
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE----------- 257
GALD G+ + ++ + L +SL+++Y KCG I A V + ++
Sbjct: 187 GALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALI 246
Query: 258 ------------------KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
K + V++WN+MI G + E+LELF M+ G+ D
Sbjct: 247 SGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYS 306
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
TF +LSAC+ G++ + + K G + +VD S+ + +A + +
Sbjct: 307 TFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDL 366
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIV 387
T +L S++T N G++D A +
Sbjct: 367 QAYDTI-LLNSMITVYSNCGRIDDARQI 393
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 19/211 (9%)
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKG-LSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
+L L +C + G++ +GR++ + G L L + L+ MY++C +++EA +F
Sbjct: 8 SLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEE 67
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
+ K + WN MI G G +SLELF M D ++ ++S A G +
Sbjct: 68 MPKR--NCFSWNTMIEGYLKSGSKGKSLELFDSMP----HKDAFSWNVVISGFAKEGNLE 121
Query: 316 EAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG----- 369
A F + K G+ S M+ + G+ EA + L P G
Sbjct: 122 VARRLFNEMPWKNGIAWNS-----MIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVL 176
Query: 370 -SLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399
+++ C N G LD + + ++V + + D
Sbjct: 177 ATVVGACTNLGALDCGKQIHARIVVDEVEFD 207
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 158/430 (36%), Positives = 244/430 (56%), Gaps = 11/430 (2%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+++ ++ + + WN +I GY ++ ++ LF ++ + D +T+ +
Sbjct: 212 GCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKR----DVITWNTMM 267
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ E AV + ++ E +L N++I Y G + A ++F MP + +
Sbjct: 268 AGYAQCGDVENAVELFEKMP----EQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVI 323
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+++ G+A+ G++ A ++F+ MPE NVVSW+A+I GY + G + AL +F +M+ V
Sbjct: 324 SWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVD 383
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K N T VL ACA L L+QG +I G + + +L+ MYAKCG+I++A
Sbjct: 384 MKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDAR 443
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + + S L +AMI G A++G KESLELF +MQ G+ PD +TF+G+LSAC H
Sbjct: 444 KVFDRMRQQDSASL--SAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCH 501
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E +F + + + P EHY CM+D L RAG EA + I +MP++P A M G
Sbjct: 502 AGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWG 561
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL+ C H +DL E V + L+ L P + YV LSN+YA RWD+ + R M+ R
Sbjct: 562 SLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRK 621
Query: 430 VKKYPGWSFV 439
VKK G S++
Sbjct: 622 VKKKLGCSWI 631
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 211/393 (53%), Gaps = 20/393 (5%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG++ + +V + + W +I Y++ ++ +++ F +M G+ P+H T+ +
Sbjct: 113 LGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASI 172
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L E+ H +I K G+ES++F+ N L+ MY G I +ARE+FD MP +
Sbjct: 173 LPACTDL---EVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDV 229
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSWN+M+ GY + G + A ++F+ +P+R+V++W+ ++ GY +CGD + A+ +FE+M
Sbjct: 230 VSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKM--- 286
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ N V+ +++ G++ + + + M ++ + ++I +A+ G ++EA
Sbjct: 287 -PEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPER----NVISWNAVISGFAQNGQVEEA 341
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
L +F + + +V+ WNAMI G + +G + +L+LF +MQ+V + P+ TF +L ACA
Sbjct: 342 LKLFKTMP--ECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACA 399
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM-- 367
++ + + + + G +V ++ G + +A + +M + +AS+
Sbjct: 400 ALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSA 459
Query: 368 --LGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398
+G + GC L+L E + + L+PD
Sbjct: 460 MIVGYAINGCSKE-SLELFEQM--QFTGLKPDR 489
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 165/360 (45%), Gaps = 44/360 (12%)
Query: 34 VIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTG 93
+++ K +++ + M+ G+ P TY L + A +HA + +T
Sbjct: 35 LVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQ 94
Query: 94 YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFE 153
+E C DI N ++ Y K G + AR+VF+
Sbjct: 95 FE---------------CQDISLG---------------NKLVSIYVKLGSLVEARRVFD 124
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
MP +NVVSW+A+I Y + +EAL F EM+DVG + N T S+L AC L L +
Sbjct: 125 EMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLGE 184
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
++ G + + L+DMYAK G I+ A +F + Q DV+ WNAMI G
Sbjct: 185 ---FHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMP--QRDVVSWNAMIAGY 239
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS 333
+G ++++L+LF E+ D IT+ +++ A G V A F+ + ++ +V
Sbjct: 240 VQNGLIEDALKLFQEIP----KRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVS-- 293
Query: 334 EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
+ M+ + G V EA++ MP E ++++G +G+++ A + K + E
Sbjct: 294 --WNTMIAGYVQNGSVKEAFKLFQIMP-ERNVISWNAVISGFAQNGQVEEALKLFKTMPE 350
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 129/278 (46%), Gaps = 35/278 (12%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S + G ++ + K+ + + WN +I GYS++ ++ LF +M + P+
Sbjct: 329 ISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNT 388
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T+ + A LA E H + ++G++SD+ + N+L+ MY CG I AR+VFD
Sbjct: 389 ETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDR 448
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + S S ++M+ GYA I+G C KE+L +F
Sbjct: 449 MRQQDSASLSAMIVGYA--------------------------ING---CS--KESLELF 477
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ--TSLIDMYA 241
E+M+ G K + VT V VL AC H G +D+GR M + +T ++ +ID+
Sbjct: 478 EQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMT-RFYHITPAMEHYGCMIDLLG 536
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
+ G EA + + + + D +W +++ H +
Sbjct: 537 RAGCFDEANDLINKMPI-KPDADMWGSLLSACRTHNNI 573
>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 165/492 (33%), Positives = 250/492 (50%), Gaps = 65/492 (13%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
N+ Y+ V + P ++ WN++IRGYS S NP+K++ + +MLR G SPD+ T+P++ K
Sbjct: 55 NLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLK 114
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A L + VH + KTG+E ++++S L+HMY CG++ + VF+ +P V+
Sbjct: 115 ACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVA 174
Query: 132 WNSMLDGYAKCGEMNMARQVFELMP------------------------------ERNVV 161
W S++ G+ + A + F M E NV+
Sbjct: 175 WGSLISGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLVACGRCFDPYCQSKFEFNVI 234
Query: 162 SWSALIDGYVKCGDYK-------------------------------EALVIFEEMRDVG 190
++LID Y KCGD + EA+ +F +M D+G
Sbjct: 235 LATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLG 294
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
++VT SV+ A G G+ + Y+ G + +L++MYAK G + A
Sbjct: 295 IAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKTGNAESAK 354
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACA 309
+F +EK D + W +I GLA HG ++L +F MQ G TPD IT+LG+L AC+
Sbjct: 355 KMFEDLEK--KDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLGVLYACS 412
Query: 310 HGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E +F + G+ P EHY CMVD LSRAG+ EA + MP++PTA++
Sbjct: 413 HIGLVEEGQRYFAEMRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVQPTANIW 472
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL GC H LDLA+ + + E + G YV LSN+YA RW + + RE+M+++
Sbjct: 473 GALLNGCEIHENLDLADRIRSMVSESEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSK 532
Query: 429 GVKKYPGWSFVE 440
V K S VE
Sbjct: 533 RVDKLLAHSSVE 544
>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 623
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 158/425 (37%), Positives = 238/425 (56%), Gaps = 11/425 (2%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82
LS+ W T++ +S+ S+ LFV+M R V DH++ L +L
Sbjct: 71 LSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRFG 130
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
H K G+ + + + N+L+ MYG CG + + +F + K VSW +LD K
Sbjct: 131 EQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKW 190
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DVGSKANEVTLVSV 201
+ R+VF+ MPERNVV+W+ ++ GY+ G +E L + EM G N VTL S+
Sbjct: 191 EGLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSM 250
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLT-------LPLQTSLIDMYAKCGAIKEALIVFH 254
L ACA G L GR + Y + K + + + + T+L+DMYAKCG I ++ VF
Sbjct: 251 LSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFR 310
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
+ K +V+ WNA+ GLAMHG + +++F EM + + PD++TF LLSAC+H G+V
Sbjct: 311 LMRKR--NVVTWNALFSGLAMHGKGRMVIDMFPEM-VREVKPDDLTFTALLSACSHLGMV 367
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
E W F SL G+ PK +HYACMVD L RAG++ EA + +MP+ P +LGSLL
Sbjct: 368 DEGWRCFHSLQFYGLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSLLGS 427
Query: 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
C HGKL++AE + ++L+++ P H + +SN+Y R D A R ++ RG++K P
Sbjct: 428 CSVHGKLEIAERIKRELIQMSPGHTEYQILMSNMYVAEGRSDIADGLRGSLRNRGIRKIP 487
Query: 435 GWSFV 439
G S +
Sbjct: 488 GLSSI 492
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 148/353 (41%), Gaps = 70/353 (19%)
Query: 85 VHAQIAKTGYES--DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+HA + +G + ++SN+L Y S G+I A+++FD +P
Sbjct: 28 LHAVLTTSGLKKAPRSYLSNALFQFYASSGEIATAQKLFDEIP----------------- 70
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
+ +++ V W+ L+ + + G ++ +F EMR + + V+LV +
Sbjct: 71 ------------LSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLF 118
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH--- 259
CA L L G + G ++ + +L+DMY KCG + E +F +E+
Sbjct: 119 GVCAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVV 178
Query: 260 --------------------------QSDVLIWNAMIGGLAMHGFVKESLELFTEMQI-V 292
+ +V+ W M+ G GF +E LEL EM
Sbjct: 179 SWTVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRC 238
Query: 293 GITPDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHY------ACMVDALSR 345
G + +T +LSACA G LV+ W +L K M+ + E Y +VD ++
Sbjct: 239 GHGLNFVTLCSMLSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAK 298
Query: 346 AGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA-EIVGKKLVELQPD 397
G + + + + ++ + +L +G HGK + ++ + + E++PD
Sbjct: 299 CGNIDSSIK-VFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPEMVREVKPD 350
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLP---LQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
AH L GR + + GL P L +L YA G I A +F + D
Sbjct: 17 AHRSFLHPGRELHAVLTTSGLK-KAPRSYLSNALFQFYASSGEIATAQKLFDEIPLSDKD 75
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ W ++ + G + S++LF EM+ + D ++ + L CA
Sbjct: 76 NVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCA 122
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 6/151 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GNID S KV + + WN + G + I +F +M+R V PD LT+ L
Sbjct: 300 GNIDSSIKVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPEMVRE-VKPDDLTFTALL 358
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS- 129
A L + + G E + ++ + G G I A + MP +
Sbjct: 359 SACSHLGMVDEGWRCFHSLQFYGLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNE 418
Query: 130 VSWNSMLDGYAKCGEMNMA----RQVFELMP 156
V S+L + G++ +A R++ ++ P
Sbjct: 419 VVLGSLLGSCSVHGKLEIAERIKRELIQMSP 449
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 163/426 (38%), Positives = 239/426 (56%), Gaps = 12/426 (2%)
Query: 17 CKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRL 76
C+V+ F T+I YS + + LFV ML + + + SG +
Sbjct: 189 CEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNI------VAWTSMISGYI 242
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
+A+A ++ E D+ + N ++ Y GD+ AR++FD MP + ++SWN+ML
Sbjct: 243 LCNRVALA--RRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTML 300
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG-SKANE 195
+GYA G++ Q+FE MPERNV SW+ LI GY G + E L F+ M G N+
Sbjct: 301 NGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPND 360
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
TLV+VL ACA LGALD G+ + Y G ++ + +LIDMY+KCG I+ A+ VF
Sbjct: 361 ATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFES 420
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
++ D++ WN+MI GLA HG ++L LF +M+I G PD ITF+G+L +C H GLV
Sbjct: 421 MD--LKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVE 478
Query: 316 EAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
E +F S+ + + P+ EHY CMVD RAG + A EF+ +MP+E A + +LL
Sbjct: 479 EGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGA 538
Query: 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
C + +DLAE+ +KL+ L+P + YV LSN+Y RW + + M G KK P
Sbjct: 539 CRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLP 598
Query: 435 GWSFVE 440
G S +E
Sbjct: 599 GCSLIE 604
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 127/268 (47%), Gaps = 34/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFL 69
G+++ ++ + +F WN +I GY+ + + + F +ML G V P+ T +
Sbjct: 307 GDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTV 366
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A RL +L VH A G++ +++ N+LI MY CG I A EVF+ M K
Sbjct: 367 LSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDL 426
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
++WNSM+ G A G CG +AL +F +M+
Sbjct: 427 ITWNSMICGLATHG-----------------------------CG--ADALTLFHQMKIN 455
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKE 248
G K + +T + VLC+C HLG +++G M+++ ++ + ++D++ + G +
Sbjct: 456 GEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDR 515
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
A I F ++D +IW A++G ++
Sbjct: 516 A-IEFVKRMPMEADAVIWAALLGACRIY 542
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 122/279 (43%), Gaps = 45/279 (16%)
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
+M AR +F+ P+ V W+A+ GY Y+E + +F +M+ + + N T VL
Sbjct: 114 QMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLK 173
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG-VEKH--- 259
+CA +GA +G + +I GL + T+LID+Y+ AI A +F G +E++
Sbjct: 174 SCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVA 233
Query: 260 -------------------------QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
+ DV++WN M+ G G +K + +LF M
Sbjct: 234 WTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPY--- 290
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR------GMVPKSEHYACMVDALSRAGQ 348
D +++ +L+ A+ G V F+ + +R G++ H C + L +
Sbjct: 291 -RDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKR 349
Query: 349 VTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ + + P + L ++L+ C G LDL + V
Sbjct: 350 M------LIDGLVVPNDATLVTVLSACARLGALDLGKWV 382
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
V +WNA+ G + F +E + LF +M+ + + P+ TF +L +CA G +E
Sbjct: 130 VELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHC 189
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ K G+ ++D S + AY+ M LE S+++G + ++
Sbjct: 190 EVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGM-LERNIVAWTSMISGYILCNRVA 248
Query: 383 LAEIVGKKLVELQPDHD 399
LA ++L +L P+ D
Sbjct: 249 LA----RRLFDLAPERD 261
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 81/190 (42%), Gaps = 5/190 (2%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G I+ + +V + + WN++I G + +++LF +M G PD +T+
Sbjct: 406 SKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFI 465
Query: 68 FLAKASGRLAKRELAVA-VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ + L E + ++ + + + ++ ++G G + A E MP
Sbjct: 466 GVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPM 525
Query: 127 KM-SVSWNSMLDG---YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ +V W ++L Y +A Q ++ +N ++ L + Y G +K+ +
Sbjct: 526 EADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARL 585
Query: 183 FEEMRDVGSK 192
MRD GSK
Sbjct: 586 KILMRDTGSK 595
>gi|15218490|ref|NP_172504.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213381|sp|Q9SY75.1|PPR30_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g10330
gi|4914335|gb|AAD32883.1|AC005489_21 F14N23.21 [Arabidopsis thaliana]
gi|332190445|gb|AEE28566.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 467
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 162/414 (39%), Positives = 242/414 (58%), Gaps = 10/414 (2%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
+NT+IR Y + S++LF ML + V P++LT+P L KA+ VA+H Q
Sbjct: 54 YNTLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIKAACSSFSVSYGVALHGQAL 113
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G+ D F+ S + YG GD+ +R++FD + V+ NS+LD + GEM+ A +
Sbjct: 114 KRGFLWDPFVQTSFVRFYGEVGDLESSRKMFDDILNPCVVACNSLLDACGRNGEMDYAFE 173
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM----RDVGSKANEVTLVSVLCACA 206
F+ MP +VVSW+ +I+G+ K G + +AL++F EM R V + NE T VSVL +CA
Sbjct: 174 YFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITP-NEATFVSVLSSCA 232
Query: 207 HL--GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
+ G + G+ + Y++ K + LT L T+L+DMY K G ++ AL +F + + V
Sbjct: 233 NFDQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQIRDKK--VC 290
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
WNA+I LA +G K++LE+F M+ + P+ IT L +L+ACA LV F S+
Sbjct: 291 AWNAIISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACARSKLVDLGIQLFSSI 350
Query: 325 -GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+ ++P SEHY C+VD + RAG + +A FI +P EP AS+LG+LL C H +L
Sbjct: 351 CSEYKIIPTSEHYGCVVDLIGRAGLLVDAANFIQSLPFEPDASVLGALLGACKIHENTEL 410
Query: 384 AEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
VGK+L+ LQP H G+YV LS A+ W EA R+AM G++K P +S
Sbjct: 411 GNTVGKQLIGLQPQHCGQYVALSTFNALDSNWSEAEKMRKAMIEAGIRKIPAYS 464
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 121/295 (41%), Gaps = 44/295 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML---RAGVSPDHLTYP 67
G +DY+ + + + W TVI G+SK K++ +F +M+ RA ++P+ T+
Sbjct: 166 GEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITPNEATFV 225
Query: 68 FLAKASGRLAKR--ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ + + L +H + + +L+ MYG GD+ A +FD +
Sbjct: 226 SVLSSCANFDQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQIR 285
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
K +WN+++ A G K+AL +FE
Sbjct: 286 DKKVCAWNAIISALASNGRP-------------------------------KQALEMFEM 314
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCG 244
M+ N +TL+++L ACA +D G + + + + T ++D+ + G
Sbjct: 315 MKSSYVHPNGITLLAILTACARSKLVDLGIQLFSSICSEYKIIPTSEHYGCVVDLIGRAG 374
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM--QIVGITPD 297
+ +A + + D + A++G +H E+ EL + Q++G+ P
Sbjct: 375 LLVDAANFIQSL-PFEPDASVLGALLGACKIH----ENTELGNTVGKQLIGLQPQ 424
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 148/431 (34%), Positives = 245/431 (56%), Gaps = 5/431 (1%)
Query: 14 DYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFLAKA 72
D + + +++P I WN++I GY +++ F ML++ + PD T + A
Sbjct: 228 DLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSA 287
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD--GMPTKMSV 130
+L +HA I + + + N+LI MY G + A + + G P+ +
Sbjct: 288 CANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVI 347
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
++ S+LDGY K G+++ AR +F+ + R+VV+W+A+I GY + G +ALV+F M G
Sbjct: 348 AFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREG 407
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K N TL +VL + L +LD G+ + I ++ + +LI MY++ G+IK+A
Sbjct: 408 PKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDAR 467
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F+ + ++ D L W +MI LA HG E++ELF +M + + PD IT++G+LSAC H
Sbjct: 468 KIFNHICSYR-DTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTH 526
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV + +F + + P S HYACM+D L RAG + EAY FI MP+EP G
Sbjct: 527 VGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWG 586
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL+ C H +DLA++ +KL+ + P++ G Y+ L+N + +W++A R++M+ +
Sbjct: 587 SLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKA 646
Query: 430 VKKYPGWSFVE 440
VKK G+S+V+
Sbjct: 647 VKKEQGFSWVQ 657
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 118/439 (26%), Positives = 206/439 (46%), Gaps = 41/439 (9%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SA + GN+D + +V + P W T+I GY+ ++ F++M+ +G+SP
Sbjct: 86 LSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQ 145
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T+ + + ++ VH+ + K G + ++NSL++MY CGD V A+ VFD
Sbjct: 146 FTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDR 205
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M K + +WN+M+ + + + ++A +F+ M + ++VSW+++I GY G AL F
Sbjct: 206 MRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETF 265
Query: 184 EEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
M S K ++ TL SVL ACA+ +L G+ + +++ + + + +LI MYAK
Sbjct: 266 SFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAK 325
Query: 243 CGAIKEA-------------LIVFHGV-------------------EKHQSDVLIWNAMI 270
GA++ A +I F + KH+ DV+ W AMI
Sbjct: 326 SGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHR-DVVAWTAMI 384
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
G A +G + ++L LF M G P+ T +LS + + + V
Sbjct: 385 VGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEV 444
Query: 331 PKSEHYACMVDALSRAGQVTEA---YEFICQMPLEPT-ASMLGSLLTGCMNHGKLDLAEI 386
++ SR+G + +A + IC T SM+ SL + + ++L E
Sbjct: 445 SSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEK 504
Query: 387 VGKKLVELQPDHDGRYVGL 405
+ + + L+PDH YVG+
Sbjct: 505 MLR--INLKPDHI-TYVGV 520
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 167/345 (48%), Gaps = 44/345 (12%)
Query: 85 VHAQIAKTGYES-DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
+HA+I K G +F++N+L+++Y G A +FD MP K + SWN++L +AK G
Sbjct: 34 IHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAG 93
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
++ AR+VF+ +P+ + VSW+ +I GY G +K A+ F M G + T +VL
Sbjct: 94 NLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLA 153
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-- 261
+CA ALD G+ + +++ G S +P+ SL++MYAKCG A +VF + +
Sbjct: 154 SCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTST 213
Query: 262 ---------------------------DVLIWNAMIGGLAMHGFVKESLELFTEM-QIVG 293
D++ WN++I G G+ +LE F+ M +
Sbjct: 214 WNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSS 273
Query: 294 ITPDEITFLGLLSACAHG-----GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQ 348
+ PD+ T +LSACA+ G + A + G V + ++ +++G
Sbjct: 274 LKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNA-----LISMYAKSGA 328
Query: 349 VTEAYEFICQMPLEPTASMLG--SLLTGCMNHGKLDLAEIVGKKL 391
V A+ I ++ P+ +++ SLL G G +D A + L
Sbjct: 329 VEVAHR-IVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSL 372
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 135/305 (44%), Gaps = 40/305 (13%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G+ID + + L + + W +I GY+++ + ++ LF M+R G P++ T +
Sbjct: 359 IGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAV 418
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT-KM 128
LA + +HA + S + + N+LI MY G I AR++F+ + + +
Sbjct: 419 LSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRD 478
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
+++W SM+ A+ G N EA+ +FE+M
Sbjct: 479 TLTWTSMILSLAQHGLGN-------------------------------EAIELFEKMLR 507
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIK 247
+ K + +T V VL AC H+G ++QG+ M + + T +ID+ + G ++
Sbjct: 508 INLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLE 567
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE----ITFLG 303
EA + + DV+ W +++ +H +V L +++ I P+ +
Sbjct: 568 EAYNFIRNMPI-EPDVVAWGSLLSSCRVHKYV--DLAKVAAEKLLLIDPNNSGAYLALAN 624
Query: 304 LLSAC 308
LSAC
Sbjct: 625 TLSAC 629
>gi|226531155|ref|NP_001148193.1| methyltransferase small domain [Zea mays]
gi|195616632|gb|ACG30146.1| methyltransferase small domain [Zea mays]
Length = 656
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 152/427 (35%), Positives = 236/427 (55%), Gaps = 2/427 (0%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPFLAK 71
ID + +V + W T+I GY + + ++ +V+M+ G + + L K
Sbjct: 226 IDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVLLVDLMK 285
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A R + +H I K G+++ F+ +L+H YG CG I A+ F + S
Sbjct: 286 ACARYSAVTEGQQLHTVILKNGFDALAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTAS 345
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
WN++L + G + AR++F+ MPER+ VSWS +I GYV+ G AL +F M +
Sbjct: 346 WNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTSI 405
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ NEVTL S L A A G LDQG+ + Y++++ + LT L + LIDMYAKCG+I +A+
Sbjct: 406 EPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAKCGSIADAVQ 465
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
F+ V S V WNAMI LA+HG+ SL+LF+++Q I P+ ITF+G+LSAC H
Sbjct: 466 FFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSACCHA 525
Query: 312 GLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
G V + Y+F+S+ + G+ P +HY CMVD L RAG + EA + + MP++P + GS
Sbjct: 526 GTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPMKPDVVIWGS 585
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
+L+ G + L E ++L +L H + LSN+YA W R+ ++ +
Sbjct: 586 ILSASRAQGNVALGERAAEELAKLDQTHGASKIALSNIYADAGHWTNVSVVRKELQDANL 645
Query: 431 KKYPGWS 437
++ G S
Sbjct: 646 ERLTGRS 652
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/422 (26%), Positives = 198/422 (46%), Gaps = 47/422 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRI----FYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
+AL+ G++D + +L + PRI + T++ ++++ + +++++F ML V
Sbjct: 83 LAALTRAGHLDRAQGLLEEM--PRIHRDAVSYTTLVTAFARAGHAARAVAVFRSMLSENV 140
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T A R +H + + + ++ +L+H Y ++ AR
Sbjct: 141 VPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYAGVLELCSARA 200
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY-KE 178
+FDGM + +V+WN ML+GY K ++MA +VF +PER+ VSW LIDGY+ C D +
Sbjct: 201 LFDGMTHRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYI-CADLISD 259
Query: 179 ALVIFEEM-RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
A+ + +M +VG+ EV LV ++ ACA A+ +G+ + ++ G +Q +L+
Sbjct: 260 AMKAYVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDALAFVQATLV 319
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM-------- 289
Y CG I A + F +K S WNA++ L +G ++E+ ELF +M
Sbjct: 320 HFYGCCGLIGLAQMTFRLSDK--SHTASWNALLAALLRNGLIREARELFDDMPERDTVSW 377
Query: 290 --QIVG---------------------ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
I G I P+E+T LSA A G + + + +
Sbjct: 378 STMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMN 437
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-----PLEPTASMLGSLLTGCMNHGKL 381
R + + ++D ++ G + +A +F ++ + P +M+ SL H L
Sbjct: 438 RPVQLTDNLSSGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSL 497
Query: 382 DL 383
DL
Sbjct: 498 DL 499
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 137/298 (45%), Gaps = 17/298 (5%)
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYGSC-GDIVYAREVFDGM 124
PFL + R A+ +HA AK+G S++F+ NS++ Y + A ++FD
Sbjct: 10 PFLVASLKRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSSLASALQLFDET 69
Query: 125 PTKM--SVSWNSMLDGYAKCGEMNMARQVFELMPE--RNVVSWSALIDGYVKCGDYKEAL 180
P + + + NS+L + G ++ A+ + E MP R+ VS++ L+ + + G A+
Sbjct: 70 PPPLRDATARNSILAALTRAGHLDRAQGLLEEMPRIHRDAVSYTTLVTAFARAGHAARAV 129
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+F M NE TL + A A GA M+ + + + L + + T+L+ Y
Sbjct: 130 AVFRSMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAY 189
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
A + A +F G+ H++ V WN M+ G + + E+F + DE++
Sbjct: 190 AGVLELCSARALFDGM-THRNTV-TWNVMLNGYVKAKMIDMAAEVFWRIP----ERDEVS 243
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD---ALSRAGQVTEAYEF 355
+L L+ L+ +A + + G V +++ +VD A +R VTE +
Sbjct: 244 WLTLIDGYICADLISDAMKAYVQM--VGEVGANDYEVLLVDLMKACARYSAVTEGQQL 299
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 156/441 (35%), Positives = 247/441 (56%), Gaps = 41/441 (9%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-----RAGVSPD 62
++ G +Y+ + +++P F +N +IR Y +K +I+++ +ML + PD
Sbjct: 102 NHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPD 161
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
T+PF+ K+ L +L VH + K G +S+ + NSL+ MY
Sbjct: 162 KFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMY-------------- 207
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN--VVSWSALIDGYVKCGDYKEAL 180
KC ++ A +VFE M ER+ + SW+A++ GY + G Y +AL
Sbjct: 208 -----------------VKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADAL 250
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
F M+ VG + +E++LVSVL CA LGAL+ G+ + Y G + + +LI+MY
Sbjct: 251 EFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMY 310
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG+I + +F ++ + DV+ W+ MI GLA HG +E++ELF EMQ I P IT
Sbjct: 311 AKCGSIDQGRRLFDQMK--ERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIIT 368
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+GLL+ACAH GL+ E +F+S+ + + P EHY C+V+ L +G++ +A E + +M
Sbjct: 369 FVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKM 428
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P +P + + GSLL+ C +HG L +A I + L+EL+P G YV LSN+YA +WD
Sbjct: 429 PRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVS 488
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R+ M ++ +KK PG S +E
Sbjct: 489 RMRKLMRSKSMKKTPGCSSIE 509
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 163/426 (38%), Positives = 239/426 (56%), Gaps = 12/426 (2%)
Query: 17 CKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRL 76
C+V+ F T+I YS + + LFV ML + + + SG +
Sbjct: 147 CEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNI------VAWTSMISGYI 200
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
+A+A ++ E D+ + N ++ Y GD+ AR++FD MP + ++SWN+ML
Sbjct: 201 LCNRVALA--RRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTML 258
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG-SKANE 195
+GYA G++ Q+FE MPERNV SW+ LI GY G + E L F+ M G N+
Sbjct: 259 NGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPND 318
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
TLV+VL ACA LGALD G+ + Y G ++ + +LIDMY+KCG I+ A+ VF
Sbjct: 319 ATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFES 378
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
++ D++ WN+MI GLA HG ++L LF +M+I G PD ITF+G+L +C H GLV
Sbjct: 379 MD--LKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVE 436
Query: 316 EAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
E +F S+ + + P+ EHY CMVD RAG + A EF+ +MP+E A + +LL
Sbjct: 437 EGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGA 496
Query: 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
C + +DLAE+ +KL+ L+P + YV LSN+Y RW + + M G KK P
Sbjct: 497 CRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLP 556
Query: 435 GWSFVE 440
G S +E
Sbjct: 557 GCSLIE 562
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 127/268 (47%), Gaps = 34/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFL 69
G+++ ++ + +F WN +I GY+ + + + F +ML G V P+ T +
Sbjct: 265 GDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTV 324
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A RL +L VH A G++ +++ N+LI MY CG I A EVF+ M K
Sbjct: 325 LSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDL 384
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
++WNSM+ G A G CG +AL +F +M+
Sbjct: 385 ITWNSMICGLATHG-----------------------------CG--ADALTLFHQMKIN 413
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKE 248
G K + +T + VLC+C HLG +++G M+++ ++ + ++D++ + G +
Sbjct: 414 GEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDR 473
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
A I F ++D +IW A++G ++
Sbjct: 474 A-IEFVKRMPMEADAVIWAALLGACRIY 500
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 122/279 (43%), Gaps = 45/279 (16%)
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
+M AR +F+ P+ V W+A+ GY Y+E + +F +M+ + + N T VL
Sbjct: 72 QMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLK 131
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG-VEKH--- 259
+CA +GA +G + +I GL + T+LID+Y+ AI A +F G +E++
Sbjct: 132 SCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVA 191
Query: 260 -------------------------QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
+ DV++WN M+ G G +K + +LF M
Sbjct: 192 WTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMP---- 247
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR------GMVPKSEHYACMVDALSRAGQ 348
D +++ +L+ A+ G V F+ + +R G++ H C + L +
Sbjct: 248 YRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKR 307
Query: 349 VTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ + + P + L ++L+ C G LDL + V
Sbjct: 308 M------LIDGLVVPNDATLVTVLSACARLGALDLGKWV 340
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
V +WNA+ G + F +E + LF +M+ + + P+ TF +L +CA G +E
Sbjct: 88 VELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHC 147
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ K G+ ++D S + AY+ M LE S+++G + ++
Sbjct: 148 EVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGM-LERNIVAWTSMISGYILCNRVA 206
Query: 383 LAEIVGKKLVELQPDHD 399
LA ++L +L P+ D
Sbjct: 207 LA----RRLFDLAPERD 219
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 81/190 (42%), Gaps = 5/190 (2%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G I+ + +V + + WN++I G + +++LF +M G PD +T+
Sbjct: 364 SKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFI 423
Query: 68 FLAKASGRLAKRELAVA-VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ + L E + ++ + + + ++ ++G G + A E MP
Sbjct: 424 GVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPM 483
Query: 127 KM-SVSWNSMLDG---YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ +V W ++L Y +A Q ++ +N ++ L + Y G +K+ +
Sbjct: 484 EADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARL 543
Query: 183 FEEMRDVGSK 192
MRD GSK
Sbjct: 544 KILMRDTGSK 553
>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
Length = 580
Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 174/535 (32%), Positives = 259/535 (48%), Gaps = 101/535 (18%)
Query: 5 SALSYLGNI-DYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SA +Y + Y VL H +P F W IR ++ ++ +L+V+M R G+ P
Sbjct: 46 SASNYSATVAQYVHSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLCPTT 105
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGY----------------------------- 94
KA R+A R +++H Q+ K G+
Sbjct: 106 FALSSALKACARIAYRMGGISIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKM 165
Query: 95 -----ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
E ++ NS++ Y GD+V A+ VFD +P K +SWNSM+ GYA+ G+M A
Sbjct: 166 FDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKAS 225
Query: 150 QVFELMPERNVVSWSALIDGYV-------------------------------KCGDY-- 176
+F+ MPERN SW+A+I G+V KCGD
Sbjct: 226 SLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDS 285
Query: 177 -----------------------------KEALVIFEEMRD--VGSKANEVTLVSVLCAC 205
EAL +F M + V + +E+TL SV+ AC
Sbjct: 286 ACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISAC 345
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
+ LG L G + YM G+ + L T+L+D+YAKCG+I +A +FHG+ K D++
Sbjct: 346 SQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRK--KDLVA 403
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
+ AMI G ++G ++++LF EM I P+ ITF+GLL+A H GLV E + F S+
Sbjct: 404 YTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMK 463
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
K +VP +HY MVD RAG++ EA E I MP++P A + G+LL C H ++ E
Sbjct: 464 KYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGE 523
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
I + EL+PD G LSN+YA +RWD+ + R+ + +G K PG S++E
Sbjct: 524 IAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCSWME 578
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 141/331 (42%), Gaps = 45/331 (13%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR--AG 58
M S S G++D +C++ + + +N +I Y+++ PN++++LF ML
Sbjct: 271 MTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVN 330
Query: 59 VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
V PD +T + A +L + + + + G E D ++ +L+ +Y CG I A
Sbjct: 331 VQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAY 390
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
E+F G+ K ++V+++A+I G G +
Sbjct: 391 ELFHGLRKK-------------------------------DLVAYTAMILGCGINGKAID 419
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
A+ +F+EM D N +T + +L A H G +++G M L ++ ++D
Sbjct: 420 AIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMKKYNLVPSVDHYGIMVD 479
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM---QIVGIT 295
++ + G ++EAL + + Q +W A++ +H V+ F E+ +
Sbjct: 480 LFGRAGRLQEALELIKSMPM-QPHAGVWGALLLACRLHNNVE-----FGEIAAQHCFELE 533
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
PD + LLS G E W K L K
Sbjct: 534 PDTTGYRSLLSNIYASG---ERWDDVKRLRK 561
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 165/497 (33%), Positives = 255/497 (51%), Gaps = 70/497 (14%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
L + Y+ ++ + +P I WN++ RGY++S++ + + LF +M + P+ T+P +
Sbjct: 146 LKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVV 205
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG----------------- 112
K+ G++ VH + K G+ + F+ +LI MY + G
Sbjct: 206 LKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNV 265
Query: 113 --------------DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ-------- 150
D+V AR +FD P + V WN M+ GY + G+M AR+
Sbjct: 266 VAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNR 325
Query: 151 -----------------------VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM- 186
+FE MPERN+ SW+ALI GY G + E L F+ M
Sbjct: 326 DVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRML 385
Query: 187 --RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
DV + V CA LGALD G+ + Y GL + + +L+DMYAKCG
Sbjct: 386 SESDVPPNDATLVTVLSACA--RLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCG 443
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
I+ A+ VF G++ D++ WN +IGGLAMH ++L LF +M+ G PD ITF+G+
Sbjct: 444 IIENAISVFRGMDT--KDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGI 501
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L AC H GLV + + +F+S+ ++ P+ EHY CMVD L+RAG++ +A F+ +MP+E
Sbjct: 502 LCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEA 561
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ LL C + ++LAE+ ++L+EL+P + YV LSN+Y RW++ +
Sbjct: 562 DGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKV 621
Query: 424 AMETRGVKKYPGWSFVE 440
AM G KK PG S +E
Sbjct: 622 AMRDTGFKKLPGCSLIE 638
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 109/245 (44%), Gaps = 41/245 (16%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+ AQI G++ + +I+ L+ + + + YAR++FD +P WNSM GYA
Sbjct: 120 IQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYA---- 175
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
+ Y+E + +F +M+ + + N T VL +
Sbjct: 176 ---------------------------QSESYREVVFLFFQMKGMDIRPNCFTFPVVLKS 208
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
C + AL +G + ++I G + T+LIDMY+ G + +A +F E + +V+
Sbjct: 209 CGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIF--CEMFERNVV 266
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITP--DEITFLGLLSACAHGGLVMEAWYFFK 322
W +MI G + S +L + ++ + P D + + ++S GG ++EA F
Sbjct: 267 AWTSMINGYIL------SADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFX 320
Query: 323 SLGKR 327
+ R
Sbjct: 321 EMPNR 325
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 85/215 (39%), Gaps = 18/215 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + V + + WNT+I G + +++LF +M AG PD +T+ +
Sbjct: 443 GIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGIL 502
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIH------MYGSCGDIVYAREVFDGM 124
A + E A +A D I + H M G + A M
Sbjct: 503 CACTHMGLVEDGFAYFQSMA-----DDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKM 557
Query: 125 PTKMS-VSWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
P + V W +L + +A +++ EL P +N ++ L + Y G +++
Sbjct: 558 PVEADGVIWAGLLGACRIYKNVELAELALQRLIELEP-KNPANYVMLSNIYGDAGRWEDV 616
Query: 180 LVIFEEMRDVG-SKANEVTLVSVLCACAHLGALDQ 213
+ MRD G K +L+ V A +LD+
Sbjct: 617 ARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDE 651
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 161/433 (37%), Positives = 241/433 (55%), Gaps = 5/433 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
L + Y+ ++ NP I +N +I+GYS + +S LF M G+ PD T L
Sbjct: 54 LNKMAYANRIFKQTQNPTIILFNAMIKGYSLNGPFEESFRLFSSMKNRGIWPDEYTLAPL 113
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA L +L +H ++ G+E I +I +Y SCG + A +VFD M +
Sbjct: 114 LKACSSLGVLQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQRDV 173
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+ WN M+ G+ K G+++M +F M +R+VVSW+ +I + EAL +F +M D
Sbjct: 174 IVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLDW 233
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT-LPLQTSLIDMYAKCGAIKE 248
G K +E T+V+VL CA LG++D G+ + Y GL + + +L+D Y K G +
Sbjct: 234 GFKPDEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFET 293
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A VF E + +V+ WN +I GLA++G + +EL EM G+ P++ TF+G+LS C
Sbjct: 294 ARRVFD--EMPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFVGVLSCC 351
Query: 309 AHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMP-LEPTAS 366
AH GL S+ + + PK EHY CMVD L R+G V EAY+ I MP P A+
Sbjct: 352 AHAGLFERGRELLASMVEHHQIEPKLEHYGCMVDLLGRSGCVREAYDLIRIMPGGAPNAA 411
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ GSLL+ C HG ++LA + K+L++L+P + G YV LSN+YA +RWD+ R M
Sbjct: 412 LWGSLLSACRTHGDVELAHLAVKELIDLEPWNSGNYVLLSNMYAEEERWDKVANVRGMMR 471
Query: 427 TRGVKKYPGWSFV 439
+ VKK PG S +
Sbjct: 472 EKNVKKTPGQSVI 484
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 92/383 (24%), Positives = 160/383 (41%), Gaps = 77/383 (20%)
Query: 74 GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
GR + +L +HA + G I + + + GS + YA +F + +N
Sbjct: 18 GRETRTQLR-EIHAHFLRHGLNQLNQILSHFVSICGSLNKMAYANRIFKQTQNPTIILFN 76
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
+M+ GY+ +N G ++E+ +F M++ G
Sbjct: 77 AMIKGYS----LN---------------------------GPFEESFRLFSSMKNRGIWP 105
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+E TL +L AC+ LG L G+ M + ++ G ++ +I++Y+ CG +++A VF
Sbjct: 106 DEYTLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVF 165
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFV-------------------------------KES 282
E +Q DV++WN MI G G V E+
Sbjct: 166 D--EMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEA 223
Query: 283 LELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAWY--FFKSLG-KRGMVPKSEHYAC 338
L LF +M G PDE T + +L CA G + + W + KS G R V
Sbjct: 224 LGLFHDMLDWGFKPDEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGN---A 280
Query: 339 MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA-EIVGKKLVELQPD 397
+VD +++G A +MP + S +L++G +G +L E++ + + E
Sbjct: 281 LVDFYNKSGMFETARRVFDEMPRKNVISW-NTLISGLALNGNGELGVELLEEMMNEGVRP 339
Query: 398 HDGRYVGLSNVYA---IFKRWDE 417
+D +VG+ + A +F+R E
Sbjct: 340 NDATFVGVLSCCAHAGLFERGRE 362
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/411 (36%), Positives = 231/411 (56%), Gaps = 34/411 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN ++ G++ S N +++ LF M G D +T+ AKA+G L + + +HA +
Sbjct: 468 WNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVI 527
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K + DLF+ + + LD Y KCGEM AR+
Sbjct: 528 KMRFHYDLFVISGI-------------------------------LDMYLKCGEMKSARK 556
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
VF +P + V+W+ +I G V+ G+ ++AL + +MR G + +E T +++ AC+ L A
Sbjct: 557 VFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTA 616
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L+QG+ + ++ + + TSL+DMYAKCG I++A +F + V +WNAMI
Sbjct: 617 LEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRS--VALWNAMI 674
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GM 329
GLA HG +E+L F EM+ G+TPD +TF+G+LSAC+H GL +A+ F S+ K G+
Sbjct: 675 VGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGV 734
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P+ EHY+C+VDALSRAG + EA + + MP E +A+M +LL C G + E V +
Sbjct: 735 EPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAE 794
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
KL + P YV LSN+YA +W+ A + R M+ VKK PG+S+++
Sbjct: 795 KLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWID 845
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 171/375 (45%), Gaps = 35/375 (9%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+++Y+ ++ + + WNTVI G ++S S+ LF+ +LR+G+ PD T +
Sbjct: 346 GSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVL 405
Query: 71 KASGRLAKRE-LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+A L + + VH K G D F+S +LI
Sbjct: 406 RACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALI------------------------ 441
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
D Y+K G+M A +F ++ SW+A++ G+ +Y+EAL +F M +
Sbjct: 442 -------DVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHER 494
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G KA+++T + A L L QG+ + +I L + + ++DMY KCG +K A
Sbjct: 495 GEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSA 554
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF+ + D + W +I G +G +++L + +M++ G+ PDE TF L+ AC+
Sbjct: 555 RKVFNQIP--SPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACS 612
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
+ + ++ K +VD ++ G + +AY +M A +
Sbjct: 613 LLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVA-LWN 671
Query: 370 SLLTGCMNHGKLDLA 384
+++ G HG + A
Sbjct: 672 AMIVGLAQHGNAEEA 686
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 107/424 (25%), Positives = 193/424 (45%), Gaps = 65/424 (15%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGR--LAKREL--AV 83
+ WN +++ Y + ++ + LF R+G+ PD ++ + G+ + +REL
Sbjct: 188 VVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVR 247
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCG----------DIVYAREVFDGMPTKMSVS-- 131
A ++ +SD+ + N + Y G D++ +R D + + +S
Sbjct: 248 AYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVV 307
Query: 132 --------------------W-------NSMLDGYAKCGEMNMARQVFELMPERNVVSWS 164
W NS ++ Y K G +N AR++F M E +++SW+
Sbjct: 308 ASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWN 367
Query: 165 ALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL-GALDQGRMMLRYMID 223
+I G + G + +L +F ++ G ++ T+ SVL AC+ L + GR + +
Sbjct: 368 TVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALK 427
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
G+ L + T+LID+Y+K G ++EA ++FH + D+ WNAM+ G + +E+L
Sbjct: 428 AGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGF--DLASWNAMMHGFTVSDNYREAL 485
Query: 284 ELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPKSE-HYACMV 340
LF+ M G D+ITF +A A G LV GK+ +V K HY V
Sbjct: 486 RLFSLMHERGEKADQITFAN--AAKAAGCLVR------LQQGKQIHAVVIKMRFHYDLFV 537
Query: 341 -----DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV--GKKLVE 393
D + G++ A + Q+P P ++++GC+ +G+ + A +L
Sbjct: 538 ISGILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGCVENGEEEQALFTYHQMRLAG 596
Query: 394 LQPD 397
+QPD
Sbjct: 597 VQPD 600
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 102/240 (42%), Gaps = 32/240 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + + KV + + +P W TVI G ++ +++ + +M AGV PD T+ L
Sbjct: 549 GEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLV 608
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA L E +HA I K D F+ SL+ MY CG+I A +F M T+
Sbjct: 609 KACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVA 668
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
WN+M+ G A + G+ +EAL F EM+ G
Sbjct: 669 LWNAMIVGLA-------------------------------QHGNAEEALNFFNEMKSRG 697
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
+ VT + VL AC+H G M G+ + + L+D ++ G I+EA
Sbjct: 698 VTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEA 757
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 138/316 (43%), Gaps = 52/316 (16%)
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
A+ K G + D+F++ +L+++Y I AR +FD MP + V WN M+ Y + G
Sbjct: 143 ALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMG 202
Query: 144 ---------------------------------------EMNMAR----QVFELMPERNV 160
E+ R ++F + +V
Sbjct: 203 AGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDV 262
Query: 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY 220
W+ + Y++ G+ EA+ F +M + +T + +L A L L+ G+ +
Sbjct: 263 TVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGA 322
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
++ G + + S I+MY K G++ A +F ++ + D++ WN +I G A G +
Sbjct: 323 VVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMK--EVDLISWNTVISGCARSGLEE 380
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG----KRGMVPKSEHY 336
SL LF ++ G+ PD+ T +L AC+ + E++ + + K G+V S
Sbjct: 381 CSLRLFIDLLRSGLLPDQFTITSVLRACSS---LEESYCVGRQVHTCALKAGIVLDSFVS 437
Query: 337 ACMVDALSRAGQVTEA 352
++D S+ G++ EA
Sbjct: 438 TALIDVYSKGGKMEEA 453
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 109/254 (42%), Gaps = 31/254 (12%)
Query: 56 RAGVSPDHLTYPFLAKASGRLAKRELAVA--VHAQIAKTGYESDLFISNSLIHMYGSCGD 113
+ VSP L + + +A +L + HA I +G D +++N+LI MY CG
Sbjct: 4 KCSVSPSSLLPQWFSILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGS 63
Query: 114 IVYAREVFDGMPT--KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV 171
+ AR++FD P + V++N++L YA GE++ +
Sbjct: 64 LFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKT-------------------- 103
Query: 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
EA IF +R TL + C G+ + Y + GL +
Sbjct: 104 -----HEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVF 158
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
+ +L+++YAK I+EA ++F + DV++WN M+ G E L LF+
Sbjct: 159 VAGALVNIYAKFQRIREARVLFDRMPVR--DVVLWNVMMKAYVEMGAGDEVLGLFSAFHR 216
Query: 292 VGITPDEITFLGLL 305
G+ PD ++ +L
Sbjct: 217 SGLRPDCVSVRTIL 230
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 265/463 (57%), Gaps = 27/463 (5%)
Query: 1 MLSFSALSYL--GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNK--SISLFVKMLR 56
+L F A S L ++DY+ K+ + + F WNT+IRG+S+S +I+LF +M+
Sbjct: 54 ILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMS 113
Query: 57 AG-VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG--- 112
+ P+ T+P + KA + K + +H K G+ D F+ ++L+ MY CG
Sbjct: 114 DEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMK 173
Query: 113 --DIVYAREVFDGMPTKM---------SVSWNSMLDGYAKCGEMNMARQVFELMPERNVV 161
+++ + + + M V WN M+DGY + G+ AR +F+ M +R+VV
Sbjct: 174 DACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVV 233
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMR---DVGSKANEVTLVSVLCACAHLGALDQGRMML 218
SW+ +I GY + G +K+A+ +F EM+ D+ + N VTLVSVL A + LG+L+ G +
Sbjct: 234 SWNTMISGYSQNGFFKDAVEVFREMKKGEDI--RPNYVTLVSVLPAVSRLGSLELGEWLH 291
Query: 219 RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGF 278
Y D G+ + L ++LIDMY+KCG I++A++VF + + +V+ W+AMI G A+HG
Sbjct: 292 LYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRE--NVITWSAMINGFAIHGQ 349
Query: 279 VKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW-YFFKSLGKRGMVPKSEHYA 337
++++ F +M+ G+ P ++ ++ LL+AC+H GLV E YF + + G+ P+ EHY
Sbjct: 350 AGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYG 409
Query: 338 CMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397
CMVD L R G + EA EFI MP++P + +LL C H +++ + V L+++ P
Sbjct: 410 CMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPH 469
Query: 398 HDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
G YV LSN+YA W E R M+ ++K PG S+++
Sbjct: 470 DSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWID 512
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 148/431 (34%), Positives = 238/431 (55%), Gaps = 34/431 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I + + L + W +I GY++ + ++ L KM +A V+P+ +TY +
Sbjct: 246 GDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSIL 305
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ E VH I ++GY ++++ N+LI MY
Sbjct: 306 QGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMY---------------------- 343
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
KCG + AR++F +P R+VV+W+A++ GY + G + EA+ +F M+ G
Sbjct: 344 ---------CKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQG 394
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K +++T S L +C+ L +G+ + + ++ G SL + LQ++L+ MYAKCG++ +A
Sbjct: 395 IKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDAR 454
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+VF+ + + +V+ W AMI G A HG +E+LE F +M+ GI PD++TF +LSAC H
Sbjct: 455 LVFN--QMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTH 512
Query: 311 GGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E F+S+ G+ P EHY+C VD L RAG + EA I MP +P S+ G
Sbjct: 513 VGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWG 572
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL+ C H ++ E + +++L PD DG YV LSN+YA R+++A R+ ME R
Sbjct: 573 ALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRD 632
Query: 430 VKKYPGWSFVE 440
V K PG S++E
Sbjct: 633 VVKEPGQSWIE 643
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 176/377 (46%), Gaps = 34/377 (9%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S + G++ + +V + + I W +I + ++ + M AG PD
Sbjct: 138 LSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDK 197
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T+ L A ++ VH +IAK G E + + SL+ MY
Sbjct: 198 VTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMY--------------- 242
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
AKCG+++ A+ +F+ +PE+NVV+W+ LI GY + G AL +
Sbjct: 243 ----------------AKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELL 286
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
E+M+ N++T S+L C AL+ G+ + RY+I G + + +LI MY KC
Sbjct: 287 EKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKC 346
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G +KEA +F G H+ DV+ W AM+ G A GF E+++LF MQ GI PD++TF
Sbjct: 347 GGLKEARKLF-GDLPHR-DVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTS 404
Query: 304 LLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L++C+ + E + L G + +V ++ G + +A QM E
Sbjct: 405 ALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMS-ER 463
Query: 364 TASMLGSLLTGCMNHGK 380
+++TGC HG+
Sbjct: 464 NVVAWTAMITGCAQHGR 480
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 172/406 (42%), Gaps = 86/406 (21%)
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
L + RL E VHA I K+G + + ++ N+L+ MY
Sbjct: 102 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMY-------------------- 141
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
AKCG + AR+VF+ + +RN+VSW+A+I+ +V EA +E M+
Sbjct: 142 -----------AKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKL 190
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G K ++VT VS+L A + L G+ + + GL L + TSL+ MYAKCG I +
Sbjct: 191 AGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISK 250
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A ++F + + +V+ W +I G A G V +LEL +MQ + P++IT+ +L C
Sbjct: 251 AQVIFDKLP--EKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGC 308
Query: 309 A------HG-----------------------------GLVMEAWYFFKSLGKRGMVPKS 333
HG G + EA F L R +V
Sbjct: 309 TTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVT-- 366
Query: 334 EHYACMVDALSRAGQVTEAYEFICQMP---LEPTASMLGSLLTGCMNHGKLDLAEIVGKK 390
+ MV ++ G EA + +M ++P S LT C + L + + ++
Sbjct: 367 --WTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQ 424
Query: 391 LVELQPDHDGRYV------GLSNVYAIFKRWDEARTTREAMETRGV 430
LV H G + L ++YA D+AR M R V
Sbjct: 425 LV-----HAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNV 465
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 111/228 (48%), Gaps = 5/228 (2%)
Query: 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
K G KEAL I M G++ +L CA L +L+QGR + ++ G+
Sbjct: 73 KQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 132
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
L+ +L+ MYAKCG++ +A VF G+ +++ W AMI E+ + + M++
Sbjct: 133 LENTLLSMYAKCGSLTDARRVFDGIRDR--NIVSWTAMIEAFVAGNQNLEAYKCYETMKL 190
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTE 351
G PD++TF+ LL+A + L+ + K G+ + +V ++ G +++
Sbjct: 191 AGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISK 250
Query: 352 AYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA-EIVGK-KLVELQPD 397
A ++P E L+ G G++D+A E++ K + E+ P+
Sbjct: 251 AQVIFDKLP-EKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPN 297
>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
[Oryza sativa Japonica Group]
gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
Length = 836
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/475 (32%), Positives = 256/475 (53%), Gaps = 46/475 (9%)
Query: 10 LGNIDYSCKVLSHLSN----PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
LG +D + ++ + +S P + WNTV+ G S+ +++ + ML+ G+ PD T
Sbjct: 235 LGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATT 294
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
L K+ + +H + E D++ +L+ MY CG + A++V D +
Sbjct: 295 VSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALE 354
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPER--------------------------- 158
+ +WNS++ GYA G ++A ++ ELM +
Sbjct: 355 HRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVL 414
Query: 159 ------------NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
NVVSW++LI G G+Y+++ EM+ G + + VT+ +L ACA
Sbjct: 415 LLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACA 474
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
L +G+ + + + + + + T+LIDMY+K G++ A ++F ++ Q ++++
Sbjct: 475 GLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQ--QKNLVLC 532
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-G 325
NAM+ GLA+HG +E++ELF +M G+ PD ITF LL+AC GLV E W +F S+
Sbjct: 533 NAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMET 592
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
K G+ P +E+YACMVD L+R G + EA +FI + P++P AS G+LLTGC HG L LAE
Sbjct: 593 KYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAE 652
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ + L L+P + Y+ + N+Y + +DEA + + AM+ RGV PGWS+++
Sbjct: 653 VAARNLFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQ 707
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 162/352 (46%), Gaps = 9/352 (2%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN + ++++ +++I++F +M GV D T + A GR AVHA
Sbjct: 124 WNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYAL 183
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K ++ + L MY D+ A V D M V WN+++ A+ G ++ A +
Sbjct: 184 KLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALE 243
Query: 151 VFELM----PERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
+ M PE NV +W+ ++ G + G +EAL + M G + + T+ S+L + A
Sbjct: 244 LAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVA 303
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
+ G L G + + + L + T+L+DMYAKCG + A V +E ++ W
Sbjct: 304 NTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALE--HRNLTTW 361
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
N+++ G A G +LEL M+ + PD T+ GL++ + G +A + +
Sbjct: 362 NSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKA 421
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTASMLGSLLTGC 375
G+ P + ++ G+ +++ F +M ++P+ + LL C
Sbjct: 422 AGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRAC 473
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 11/236 (4%)
Query: 158 RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMM 217
++ V W+ + + ++ EA+ +F EM+ G A+ T VL AC GAL +GR +
Sbjct: 119 KDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAV 178
Query: 218 LRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
Y + L + L MYA+ + A V + V+ WNA++ A G
Sbjct: 179 HAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGA--GSVVPWNAVVACCARLG 236
Query: 278 FVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYA 337
V ++LEL M G P+ T+ +LS C+ G EA S+ K+G+ P + +
Sbjct: 237 LVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVS 296
Query: 338 CMVDALSRAGQVTEAYEFIC---QMPLEP---TASMLGSLLTGCMNHGKLDLAEIV 387
++ +++ G + E C + LEP T + L + C G+LD A+ V
Sbjct: 297 SLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKC---GRLDCAQKV 349
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 86/230 (37%), Gaps = 51/230 (22%)
Query: 198 LVSVLCACAHLGALDQGRMMLRYM--------IDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
LVS+L CA L D + R + + GLS + +L+D+ A+ G
Sbjct: 47 LVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSC 106
Query: 250 LIVFH-GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
+ H E D ++WN + LA E++ +F EMQ G+ D T +L AC
Sbjct: 107 ARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHAC 166
Query: 309 AHGGLVME-----------------------------------AWYFFKSLGKRGMVPKS 333
G + E A ++G +VP +
Sbjct: 167 GRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWN 226
Query: 334 EHYACMVDALSRAGQVTEAYEFICQMPL---EPTASMLGSLLTGCMNHGK 380
AC +R G V +A E +M EP + ++L+GC HG+
Sbjct: 227 AVVAC----CARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGR 272
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/436 (35%), Positives = 247/436 (56%), Gaps = 5/436 (1%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTY 66
++LG +D + + + I WN +I GY+++ K++ LF +ML + ++PD T
Sbjct: 241 THLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTI 300
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD-GMP 125
+ A L + VHA I +T + ++N+LI Y G + AR + D M
Sbjct: 301 TSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSME 360
Query: 126 TKMSV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
T ++V S+ ++L+GY K G+M AR++F +M R+VV+W+A+I GY + G EA+ +F
Sbjct: 361 TDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFR 420
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M G + N TL +VL CA L LD G+ + I L + + ++I MYA+ G
Sbjct: 421 SMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSG 480
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+ A +F V + + + W +MI LA HG +E++ LF EM G+ PD IT++G+
Sbjct: 481 SFPWARRMFDQV-CWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGV 539
Query: 305 LSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LSAC+H G V E ++ + + + P+ HYACMVD L+RAG +EA EFI +MP+EP
Sbjct: 540 LSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEP 599
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
A GSLL+ C H +LAE+ +KL+ + P++ G Y ++NVY+ RW +A +
Sbjct: 600 DAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWK 659
Query: 424 AMETRGVKKYPGWSFV 439
A + + V+K G+S+
Sbjct: 660 ARKEKAVRKETGFSWT 675
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 151/311 (48%), Gaps = 32/311 (10%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W ++ G +++ ++I + M G +P T + + + VH+ +
Sbjct: 132 WTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVV 191
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G S + ++NS+++MYG CGD A VF+ MP + SWN+M+ G M++A
Sbjct: 192 KLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAES 251
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA-NEVTLVSVLCACAHLG 209
+FE MP R++VSW+A+I GY + G +AL +F M S A +E T+ SVL ACA+LG
Sbjct: 252 LFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLG 311
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA-------------LIVFHGV 256
+ G+ + Y++ ++ + +LI YAK G+++ A +I F +
Sbjct: 312 NVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTAL 371
Query: 257 EK------------------HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
+ + DV+ W AMI G +G E+++LF M G P+
Sbjct: 372 LEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNS 431
Query: 299 ITFLGLLSACA 309
T +LS CA
Sbjct: 432 YTLAAVLSVCA 442
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 156/339 (46%), Gaps = 37/339 (10%)
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGS----CGDIVYAREVFDGMP--TKMSVSWNSMLD 137
A+HA+ K G + ++ N+L+ YG G + AR +FD +P + +WNS+L
Sbjct: 47 AIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLLS 106
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
+AK G + AR VF MPER+ VSW+ ++ G + G + EA+ +M G + T
Sbjct: 107 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 166
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH--- 254
L +VL +CA A GR + +++ GL +P+ S+++MY KCG + A VF
Sbjct: 167 LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMP 226
Query: 255 -----------GVEKH---------------QSDVLIWNAMIGGLAMHGFVKESLELFTE 288
+ H ++ WNAMI G +G ++L+LF+
Sbjct: 227 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSR 286
Query: 289 M-QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347
M + PDE T +LSACA+ G V + + M S+ ++ +++G
Sbjct: 287 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 346
Query: 348 QVTEAYEFICQ-MPLEPTASMLGSLLTGCMNHGKLDLAE 385
V A + Q M + +LL G + G ++ A
Sbjct: 347 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAR 385
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 146/388 (37%), Positives = 225/388 (57%), Gaps = 30/388 (7%)
Query: 54 MLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113
ML P+ TYPF+ KA + L +VH + K G+ ++ + N+L+HMY C
Sbjct: 1 MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCC-- 58
Query: 114 IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKC 173
G + AR+VF+ M + + VSWSA+I GYV+
Sbjct: 59 -------------------------RGGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRV 93
Query: 174 GDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
G +A+ +F EM+ G +E+T+VSVL AC LGAL+ G+ + Y+ + + + L
Sbjct: 94 GRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELS 153
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
+LIDM+AKCG + +A +F + + +++ W ++IGGLAMHG E++ +F EM G
Sbjct: 154 NALIDMFAKCGDVDKATNLFRSM--RERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSG 211
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEA 352
+TPD++ F+GLLSAC+H GLV + +F S+ K +VPK EHY CMVD L RAG V EA
Sbjct: 212 VTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEA 271
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412
+F+ +MP++P + +L+ C HG+L L E + ++L+ +P H+ YV LSN+YA
Sbjct: 272 LKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESNYVLLSNIYAKM 331
Query: 413 KRWDEARTTREAMETRGVKKYPGWSFVE 440
W++ REAM+ +G+KK PG + +E
Sbjct: 332 SDWEKKTRIREAMDMKGMKKIPGSTMIE 359
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 122/272 (44%), Gaps = 35/272 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+++ KV + W+ +I GY + + +I+LF +M GV PD +T +
Sbjct: 63 GGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVL 122
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L EL V + + K + ++ +SN+LI M+ CGD+ A +F M + V
Sbjct: 123 SACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIV 182
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW S++ G A M R V EA+ +FEEM G
Sbjct: 183 SWTSVIGGLA--------------MHGRGV-----------------EAVAVFEEMVRSG 211
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ--TSLIDMYAKCGAIKE 248
++V + +L AC+H G +D+G+ M K S+ ++ ++DM + G +KE
Sbjct: 212 VTPDDVVFIGLLSACSHSGLVDKGKRYFDSM-RKDFSIVPKIEHYGCMVDMLCRAGLVKE 270
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
AL + + V +W +I HG +K
Sbjct: 271 ALKFVQEMPIDPNPV-VWRTLINACRAHGELK 301
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 81/201 (40%), Gaps = 33/201 (16%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D + + + I W +VI G + +++++F +M+R+GV+PD + + L
Sbjct: 164 GDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGL- 222
Query: 71 KASGRLAKRELAVAVHAQIAKTG------YESDLFISNSLIH------MYGSCGDIVYAR 118
L+ H+ + G D I + H M G + A
Sbjct: 223 ----------LSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEAL 272
Query: 119 EVFDGMPTKMS-VSWNSMLDGYAKCGEMNMARQVF------ELMPERNVVSWSALIDGYV 171
+ MP + V W ++++ GE+ + ++ E M E N V S + Y
Sbjct: 273 KFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESNYVLLSNI---YA 329
Query: 172 KCGDYKEALVIFEEMRDVGSK 192
K D+++ I E M G K
Sbjct: 330 KMSDWEKKTRIREAMDMKGMK 350
>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 842
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/475 (32%), Positives = 256/475 (53%), Gaps = 46/475 (9%)
Query: 10 LGNIDYSCKVLSHLSN----PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
LG +D + ++ + +S P + WNTV+ G S+ +++ + ML+ G+ PD T
Sbjct: 235 LGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATT 294
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
L K+ + +H + E D++ +L+ MY CG + A++V D +
Sbjct: 295 VSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALE 354
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPER--------------------------- 158
+ +WNS++ GYA G ++A ++ ELM +
Sbjct: 355 HRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVL 414
Query: 159 ------------NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
NVVSW++LI G G+Y+++ EM+ G + + VT+ +L ACA
Sbjct: 415 LLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACA 474
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
L +G+ + + + + + + T+LIDMY+K G++ A ++F ++ Q ++++
Sbjct: 475 GLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQ--QKNLVLC 532
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-G 325
NAM+ GLA+HG +E++ELF +M G+ PD ITF LL+AC GLV E W +F S+
Sbjct: 533 NAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMET 592
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
K G+ P +E+YACMVD L+R G + EA +FI + P++P AS G+LLTGC HG L LAE
Sbjct: 593 KYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAE 652
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ + L L+P + Y+ + N+Y + +DEA + + AM+ RGV PGWS+++
Sbjct: 653 VAARNLFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQ 707
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 162/352 (46%), Gaps = 9/352 (2%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN + ++++ +++I++F +M GV D T + A GR AVHA
Sbjct: 124 WNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYAL 183
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K ++ + L MY D+ A V D M V WN+++ A+ G ++ A +
Sbjct: 184 KLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALE 243
Query: 151 VFELM----PERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
+ M PE NV +W+ ++ G + G +EAL + M G + + T+ S+L + A
Sbjct: 244 LAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVA 303
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
+ G L G + + + L + T+L+DMYAKCG + A V +E ++ W
Sbjct: 304 NTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALE--HRNLTTW 361
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
N+++ G A G +LEL M+ + PD T+ GL++ + G +A + +
Sbjct: 362 NSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKA 421
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTASMLGSLLTGC 375
G+ P + ++ G+ +++ F +M ++P+ + LL C
Sbjct: 422 AGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRAC 473
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 11/236 (4%)
Query: 158 RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMM 217
++ V W+ + + ++ EA+ +F EM+ G A+ T VL AC GAL +GR +
Sbjct: 119 KDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAV 178
Query: 218 LRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
Y + L + L MYA+ + A V + V+ WNA++ A G
Sbjct: 179 HAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGA--GSVVPWNAVVACCARLG 236
Query: 278 FVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYA 337
V ++LEL M G P+ T+ +LS C+ G EA S+ K+G+ P + +
Sbjct: 237 LVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVS 296
Query: 338 CMVDALSRAGQVTEAYEFIC---QMPLEP---TASMLGSLLTGCMNHGKLDLAEIV 387
++ +++ G + E C + LEP T + L + C G+LD A+ V
Sbjct: 297 SLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKC---GRLDCAQKV 349
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 86/230 (37%), Gaps = 51/230 (22%)
Query: 198 LVSVLCACAHLGALDQGRMMLRYM--------IDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
LVS+L CA L D + R + + GLS + +L+D+ A+ G
Sbjct: 47 LVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSC 106
Query: 250 LIVFH-GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
+ H E D ++WN + LA E++ +F EMQ G+ D T +L AC
Sbjct: 107 ARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHAC 166
Query: 309 AHGGLVME-----------------------------------AWYFFKSLGKRGMVPKS 333
G + E A ++G +VP +
Sbjct: 167 GRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWN 226
Query: 334 EHYACMVDALSRAGQVTEAYEFICQMPL---EPTASMLGSLLTGCMNHGK 380
AC +R G V +A E +M EP + ++L+GC HG+
Sbjct: 227 AVVAC----CARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGR 272
>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 611
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 160/417 (38%), Positives = 238/417 (57%), Gaps = 36/417 (8%)
Query: 29 FYWNTVIRGYSKSKNPN---KSISLFVKMLRAGVSPDHLTYPFLAKASGRL-AKRELAVA 84
F NT+IR + S P+ ++ + F MLRA V+P+ T+PFL K+ L ++ +
Sbjct: 98 FLVNTLIRTHVTSPFPSARRRAAAFFPLMLRAAVAPNKFTFPFLLKSCAALPGSPDVGLQ 157
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
HA K G+ +D ++SN+LIHMY G G
Sbjct: 158 AHAAALKFGFAADHYVSNTLIHMYSCFG-----------------------------AGF 188
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
+ AR VFE MP + V+WSA+I GYV+ G +A+V+F M+ G + +EVT++ VL A
Sbjct: 189 LGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAA 248
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
A LGAL+ R + R++ +G+ ++ L +LID AKCG + A+ VF G+E + V+
Sbjct: 249 AADLGALELTRWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGME--ERTVV 306
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
W ++I LAM G KE++ +F EM+ VG+ PD++ F+G+L+AC+H G+V E +F S+
Sbjct: 307 SWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSM 366
Query: 325 GKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
G+ PK EHY CMVD RAG V + EF+ MP++P + +L+ C HG+L+L
Sbjct: 367 KTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLEL 426
Query: 384 AEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
E + + L+ P H+ YV LSNVYA+ +RW E R M RG+KK PG S VE
Sbjct: 427 GESITRNLLNEFPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVE 483
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 122/288 (42%), Gaps = 46/288 (15%)
Query: 4 FSALSYLGNI---DYSC----------KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISL 50
F+A Y+ N YSC V + W+ +I GY ++ + ++ L
Sbjct: 167 FAADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVL 226
Query: 51 FVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGS 110
F M +GV PD +T + A+ L EL V + + G + + N+LI
Sbjct: 227 FRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGKSVTLCNALIDTLAK 286
Query: 111 CGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGY 170
CGD+ A VF+GM + VSW S++D A G
Sbjct: 287 CGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGR-------------------------- 320
Query: 171 VKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLT 229
KEA+ +FEEM+ VG ++V + VL AC+H G +D+GR M + G+
Sbjct: 321 -----GKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPK 375
Query: 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
+ ++DM+ + G +++ L + + + +IW ++ HG
Sbjct: 376 IEHYGCMVDMFGRAGMVEQGLEFVRAM-PMKPNPIIWRTLVAACRAHG 422
>gi|115448475|ref|NP_001048017.1| Os02g0730900 [Oryza sativa Japonica Group]
gi|46390470|dbj|BAD15931.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|46390866|dbj|BAD16370.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537548|dbj|BAF09931.1| Os02g0730900 [Oryza sativa Japonica Group]
gi|125541007|gb|EAY87402.1| hypothetical protein OsI_08809 [Oryza sativa Indica Group]
gi|125583571|gb|EAZ24502.1| hypothetical protein OsJ_08263 [Oryza sativa Japonica Group]
Length = 488
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 146/363 (40%), Positives = 218/363 (60%), Gaps = 6/363 (1%)
Query: 82 AVAVHAQIAKTGYE---SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
A +HA + K+G S ++ S SL+ +Y G + AR++FDGMP K VSWN +LDG
Sbjct: 81 AEQIHALLVKSGDPPSVSGVYASTSLVRVYARLGRLGDARKMFDGMPVKTVVSWNVLLDG 140
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV-GSKANEVT 197
+ +++ A +VF MPERNVVSW+ +I G+V+ G +EA+ +F EM V G +E T
Sbjct: 141 IVRASDLDAAWEVFVEMPERNVVSWNTVIAGFVRHGWVQEAVDLFAEMTVVYGLAPDEAT 200
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+V + A +G L GR Y+I + SL L +LI+MY +CG++ +A F V
Sbjct: 201 MVGFVSAVRDMGVLGIGRCAHGYVIRREFSLDGALGVALINMYTRCGSMGDAFRCFSSVA 260
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+V W ++IGG A HG + +L LFTEM+ +GI P+ +TFL +L+AC+HGGLV E
Sbjct: 261 --SKNVEQWTSVIGGFAAHGHPEMALRLFTEMRQLGIEPNGVTFLAVLNACSHGGLVNEG 318
Query: 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
+ +F + G+ +HY C++D L RAG + EA+E +P +P + SLL C +
Sbjct: 319 FKYFNLMRSMGIKSTMQHYGCLIDLLGRAGFLEEAFELASSLPEDPGLVIWSSLLAACQS 378
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
HG +++AE+ +KL +P H YV LSN YA +W++ + TR ME GV K PG S
Sbjct: 379 HGNVEMAEVAARKLAHAEPRHGSSYVLLSNTYARAGQWEDLKRTRRKMEEYGVMKQPGLS 438
Query: 438 FVE 440
++E
Sbjct: 439 WIE 441
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 117/270 (43%), Gaps = 33/270 (12%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPDHLTYPFLA 70
++D + +V + + WNTVI G+ + +++ LF +M G++PD T
Sbjct: 146 DLDAAWEVFVEMPERNVVSWNTVIAGFVRHGWVQEAVDLFAEMTVVYGLAPDEATMVGFV 205
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + + H + + + D + +LI+MY CG + A F + +K
Sbjct: 206 SAVRDMGVLGIGRCAHGYVIRREFSLDGALGVALINMYTRCGSMGDAFRCFSSVASKNVE 265
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
W S++ G+A G M AL +F EMR +G
Sbjct: 266 QWTSVIGGFAAHGHPEM-------------------------------ALRLFTEMRQLG 294
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ N VT ++VL AC+H G +++G M G+ T+ LID+ + G ++EA
Sbjct: 295 IEPNGVTFLAVLNACSHGGLVNEGFKYFNLMRSMGIKSTMQHYGCLIDLLGRAGFLEEAF 354
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+ + + ++IW++++ HG V+
Sbjct: 355 ELASSLPE-DPGLVIWSSLLAACQSHGNVE 383
>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 479
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 162/444 (36%), Positives = 242/444 (54%), Gaps = 35/444 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ F A+S N++Y+ V + P F WNT+IRG+ S + + F K ++
Sbjct: 50 IIMFCAVS--QNMNYALNVFDKIPKPDSFLWNTMIRGFGNSTTHSHNAIHFFKRMQLAHR 107
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD+ T+ F+ K RL L +H + K G+E+ ++ NSLIHMYG DI A ++
Sbjct: 108 PDNFTFSFILKIIARLRFVNLGKQLHCSLFKFGFENHTYVRNSLIHMYGMLKDIEIAHQL 167
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
F+ M VSWNS++D + CG+ N A +F M +
Sbjct: 168 FEEMYQPNLVSWNSIIDCHVYCGKYNEAIDLFTKMVQ----------------------- 204
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID--KGLSLTLPLQTSLID 238
++ + + + TLV L AC +G+LD GR + ++ D ++ + +L+D
Sbjct: 205 ---QQHNGMELQPDHATLVVTLSACGAIGSLDFGRKVHSFVRDGVNSFGESISVFNALVD 261
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT-PD 297
MYAKCGA++EA F +++ +V+ WN MI G A HG +E+L LFT M + PD
Sbjct: 262 MYAKCGAVEEAYETFSNMKR--KNVVSWNVMILGFASHGNGEEALALFTRMLHENVERPD 319
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFI 356
EITFL +L AC+HGGLV E +F+ + + + P +HY CMVD L RAG EAYE I
Sbjct: 320 EITFLCVLCACSHGGLVDEGRRYFEIMNRDYNIKPTIKHYGCMVDLLGRAGLFVEAYELI 379
Query: 357 CQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWD 416
MP+E A + +LL C N+G ++L E V K L+EL+PDH YV L+N+YA +W+
Sbjct: 380 KSMPVECNAIIWRTLLAACRNYGNVELGEKVRKHLMELEPDHSSDYVLLANMYASTGQWN 439
Query: 417 EARTTREAMETRGVKK-YPGWSFV 439
E R +M+ R V+K PG SF+
Sbjct: 440 EMSKERRSMQERRVRKPEPGNSFI 463
>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 145/434 (33%), Positives = 252/434 (58%), Gaps = 9/434 (2%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + +V L+ W ++I G +++ +++ LF +M V+ D T LA
Sbjct: 295 GRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFT---LA 351
Query: 71 KASGR-LAKRELAVA--VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
G L+++++++ +HA G +S + ++N+L+ MY CGD+ A F+ MP +
Sbjct: 352 TVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIR 411
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+SW +M+ +++ G++ AR+ F+ MPERNV+SW++++ Y++ G ++E L ++ +M
Sbjct: 412 DIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQML 471
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G K + +T + + ACA L L G +L G S + + S++ MY++CG I+
Sbjct: 472 REGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIE 531
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
EA +F + +++ WNAM+ G A +G ++ +E+F +M +G PD+I+++ +LS
Sbjct: 532 EAQKMFSSIV--MKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSG 589
Query: 308 CAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H G V E Y+F S+ K G+ P SEH+ CMVD L RAGQ+ +A I QMP +P A+
Sbjct: 590 CSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAA 649
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ G+LL C HG LAE+ K L+EL + G Y L+N+Y+ + R+ M
Sbjct: 650 IWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMR 709
Query: 427 TRGVKKYPGWSFVE 440
+GV+K PG S++E
Sbjct: 710 DKGVRKNPGCSWIE 723
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 195/412 (47%), Gaps = 43/412 (10%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTY 66
S G I + +V + P ++ WNT+I G++ S ++ LF KM R VS + +
Sbjct: 50 SNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMS 109
Query: 67 PFL--------AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
+ KASG L +LA+ +H K + D + S++ MY CG + +A+
Sbjct: 110 GYFHNGELEATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQ 169
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
+VF P WNSM+ GY+K G + A ++F MPER+ VSW+ +I + G E
Sbjct: 170 KVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAE 229
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
L F EM + G + N +T SVL AC + L+ G + ++ L + LID
Sbjct: 230 TLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLID 289
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MYAKCG ++ A VF G+ +H + + W ++IGG+A GF +E+L LF +M+ V + D+
Sbjct: 290 MYAKCGRLESARQVFDGLTEH--NAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQ 347
Query: 299 ITFLGLLSAC-------------AHG---GL---VMEAWYFFKSLGKRGMVPKSEH---- 335
T +L C AH GL V A K G V K+ H
Sbjct: 348 FTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFEL 407
Query: 336 --------YACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+ M+ A S+AG V +A E+ +MP E S+L M G
Sbjct: 408 MPIRDIISWTAMITAFSQAGDVEKAREYFDKMP-ERNVISWNSMLATYMQRG 458
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 132/254 (51%), Gaps = 25/254 (9%)
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
K L +A +HAQ+ G +S +F+ N L++MY +CG I A VF G+
Sbjct: 12 KECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVY 71
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD-------------YK 177
SWN+M+ G+A G+M A ++FE MPER+ VSW++++ GY G+ K
Sbjct: 72 SWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLK 131
Query: 178 EALVI--FEEMRDVG-SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT 234
AL + F E D G E +++ + C GA+D + + + + +L
Sbjct: 132 LALQLHGFAEKFDFGIDTCVETSVLDMYIKC---GAMD----FAQKVFCRTPNPSLFCWN 184
Query: 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
S+I Y+K G++K+AL +F + + D + WN MI L+ HGF E+L F EM G
Sbjct: 185 SMIYGYSKYGSVKKALELF--AKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGF 242
Query: 295 TPDEITFLGLLSAC 308
P+ +T+ +LSAC
Sbjct: 243 RPNSMTYASVLSAC 256
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 135/277 (48%), Gaps = 33/277 (11%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A S G+++ + + + + WN+++ Y + + + ++++MLR GV D +
Sbjct: 421 TAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWI 480
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T+ A LA L + AQ K G+ S++ ++NS++ MY CG I A+++F +
Sbjct: 481 TFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSI 540
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
K VSWN+M+ GYA+ G+ R+V E IFE
Sbjct: 541 VMKNLVSWNAMMAGYAQNGQ---GRKVIE----------------------------IFE 569
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKC 243
+M ++G+ ++++ VSVL C+H G + +G+ M D G+S ++D+ +
Sbjct: 570 KMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRA 629
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G +++A + + + + + IW A++ +HG K
Sbjct: 630 GQLEQAKNLINQM-PFKPNAAIWGALLAACRIHGNTK 665
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 162/473 (34%), Positives = 246/473 (52%), Gaps = 42/473 (8%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S +G I+ + V S + + WN +I Y + K++++ M + D +T
Sbjct: 1424 SKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLS 1483
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ AS + +L H + ESD+ ++NS+I MY C I AR+VFD +
Sbjct: 1484 SILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTER 1543
Query: 128 MSVSWNSMLDGYAKCG-----------------------------------EMNMARQVF 152
V WN++L YA+ G ++N A+ +F
Sbjct: 1544 DLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMF 1603
Query: 153 ELMP----ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
M + N+++W+ LI G + G EA++ F++M++ G + + ++ SVL AC +
Sbjct: 1604 SQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDI 1663
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
+L GR + ++ L++P+ TSL+DMYAKCG+I EA VFH + ++ I+NA
Sbjct: 1664 PSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSS--KELPIYNA 1721
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKR 327
MI A+HG E+L LF +Q GI PD ITF +LSAC+H GLV E F + K
Sbjct: 1722 MISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKH 1781
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
M P EHY C+V LSR G + EA I MP +P A +LGSLLT C H +++L E +
Sbjct: 1782 NMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYL 1841
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
K L +L+P + G YV LSN YA RW E R+ M+ RG++K PG S+++
Sbjct: 1842 SKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQ 1894
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 144/296 (48%), Gaps = 33/296 (11%)
Query: 14 DYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS 73
+ + ++ L +F W ++ + ++ F++M GV PD+ P + KA
Sbjct: 1228 EVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKAC 1287
Query: 74 GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
G L L VH + K G+ + +F+S+SL+ MYG
Sbjct: 1288 GSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYG------------------------ 1323
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
KCG + AR+VF+ M E+NVV+W+++I GYV+ G +EA+ +F +MR G +
Sbjct: 1324 -------KCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEP 1376
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
VT+ S L A A+L AL +G+ I L L L +S+I+ Y+K G I++A +VF
Sbjct: 1377 TRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVF 1436
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ DV+ WN +I H V ++L + M+ + D +T +LSA A
Sbjct: 1437 S--RMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASA 1490
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 167/371 (45%), Gaps = 38/371 (10%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + KV + + WN++I GY ++ ++I +F M G+ P +T
Sbjct: 1326 GVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFL 1385
Query: 71 KASGRLAKRELAVAVHAQI-AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
AS L A I K G+ + S L ++ GS
Sbjct: 1386 SASANL---------DALIEGKQGHAIAILNSLDLDNILGS------------------- 1417
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
S+++ Y+K G + A VF M E++VV+W+ LI YV+ +AL + MR
Sbjct: 1418 ----SIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSE 1473
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ + VTL S+L A A + G+ Y I + L + + S+IDMYAKC I +A
Sbjct: 1474 NLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDA 1533
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF + D+++WN ++ A G E+L+LF +MQ + P+ I++ ++
Sbjct: 1534 RKVFDSTT--ERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFL 1591
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTAS 366
G V EA F + G P + ++ L+++G EA F +M + P+ +
Sbjct: 1592 RNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIA 1651
Query: 367 MLGSLLTGCMN 377
+ S+L C +
Sbjct: 1652 SITSVLLACTD 1662
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
YAKC +A ++F + RNV SW+A++ + G ++AL+ F EM++ G + L
Sbjct: 1221 YAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVL 1280
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG-VE 257
+VL AC L + G+ + Y++ G + + +SL+DMY KCG +++A VF VE
Sbjct: 1281 PNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVE 1340
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
K +V+ WN+MI G +G +E++++F +M++ GI P +T LSA A+ ++E
Sbjct: 1341 K---NVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIE 1396
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 21/223 (9%)
Query: 167 IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG- 225
I K G +E++ + EM + +L C + AL G+ + ++ G
Sbjct: 1146 ISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGD 1205
Query: 226 -LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLE 284
+ ++T L+ YAKC + A+ +FH + +V W A++G GF +++L
Sbjct: 1206 FFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVR--NVFSWAAIVGLQCRMGFSEDALL 1263
Query: 285 LFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK--RGMVPKSEHYAC---- 338
F EMQ G+ PD +L AC L+ LGK G V K AC
Sbjct: 1264 GFIEMQENGVFPDNFVLPNVLKACGSLQLI--------GLGKGVHGYVLKMGFGACVFVS 1315
Query: 339 --MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+VD + G + +A + M +E S++ G + +G
Sbjct: 1316 SSLVDMYGKCGVLEDARKVFDSM-VEKNVVTWNSMIVGYVQNG 1357
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 153/431 (35%), Positives = 242/431 (56%), Gaps = 12/431 (2%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
N+ + +V + + WN++I Y +I L KM + +T+ +
Sbjct: 125 NLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNI----VTWNSVVC 180
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
+ ELA +V Q+ S NS+I Y GD+ A+ +F MP K VS
Sbjct: 181 GLSKAGNMELAHSVFEQMPLRNEVS----WNSMISGYVRIGDVRAAQSIFYQMPEKTVVS 236
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
W +M+ GYA G++ A +F MP +NVVSW+A+I GYV ++ +AL +F M G
Sbjct: 237 WTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGE 296
Query: 192 -KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ ++ TL+S+L ACAHLG+L+ G+ + Y+ L L++PL +LIDM+AKCG ++ A
Sbjct: 297 CRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAK 356
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VFH + K ++ W M+ GLA++G +E++ LF +M + G PD++ F+ +LSAC H
Sbjct: 357 EVFHHMSKRC--IITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTH 414
Query: 311 GGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GGLV E F + + G+ P+ EHY CMVD L RAG++ EA F +M L+P A +
Sbjct: 415 GGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWA 474
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C HG DL + V +K+++ +P + +SN+ A F RW++ + R AM +
Sbjct: 475 TLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSASFGRWEDVLSFRVAMRQQR 534
Query: 430 VKKYPGWSFVE 440
++K PG S ++
Sbjct: 535 MEKVPGCSSIQ 545
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 12/211 (5%)
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
+KEAL ++ M+ + +AN T +L AL+ GR++ ++ G ++ +Q S
Sbjct: 55 HKEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNS 114
Query: 236 LIDMYAKCGA-IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
L+ YA C + A VF E + DV+ WN+MI G ++ ++ L +M I
Sbjct: 115 LLGFYANCSENLGSAYRVFE--EMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNI 172
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
+T+ ++ + G + A F+ + R V + M+ R G V A
Sbjct: 173 ----VTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVS----WNSMISGYVRIGDVRAAQS 224
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
QMP E T ++++G +G L AE
Sbjct: 225 IFYQMP-EKTVVSWTAMISGYATNGDLKSAE 254
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 176/507 (34%), Positives = 256/507 (50%), Gaps = 78/507 (15%)
Query: 10 LGNIDYSCKVLSHLS-NPRIFYWNTVIRGYSKS-KNPNKSISLFVKMLRAGVSPDHLTYP 67
L + YS + SH++ +P + +N ++R + + + ++ L+ +M +SP++ T+P
Sbjct: 62 LKDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFP 121
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
F+ A L + +A H ++ K G ++D NS++ MY CG+ AR+VFD + K
Sbjct: 122 FVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEK 181
Query: 128 MSVSWNSMLDGYAK---------------------------------CGE---MNMARQV 151
VSWNS+L GYAK CGE + + R V
Sbjct: 182 DLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWV 241
Query: 152 FELMPER----NVVSWSALIDGYVKCGDY------------------------------- 176
+ ER N SALI Y KCG+
Sbjct: 242 EGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMA 301
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
EA+ +F M++ G N+VTL +VL ACA +GALD G+ M Y +GL + + T+L
Sbjct: 302 DEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATAL 361
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG--I 294
IDMYAKCG+++ A VF+ + + WNAMI LA HG KE+L LF M G
Sbjct: 362 IDMYAKCGSLESAQRVFNDMPRKNDAS--WNAMISALASHGKAKEALSLFERMSDEGGSA 419
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAY 353
P++ITF+ LLSAC H GLV E + F + G+VPK EHY+CMVD LSRAG + EA+
Sbjct: 420 RPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAW 479
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413
+ I +MP +P LG+L + C +D+ E V + L+EL P + G Y+ S +Y
Sbjct: 480 DVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLN 539
Query: 414 RWDEARTTREAMETRGVKKYPGWSFVE 440
WD+A R M GV K PG S++E
Sbjct: 540 MWDDAARMRALMRENGVTKTPGCSWIE 566
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 117/264 (44%), Gaps = 34/264 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S S G + S ++ + + WN I Y+++ +++ISLF M GV P+ +
Sbjct: 262 SMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKV 321
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T + A + +L + G + D+F++ +LI MY CG + A+ VF+ M
Sbjct: 322 TLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDM 381
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
P K SWN+M+ A G+ KEAL +FE
Sbjct: 382 PRKNDASWNAMISALASHGKA-------------------------------KEALSLFE 410
Query: 185 EMRDVGSKA--NEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYA 241
M D G A N++T VS+L AC H G +D+G + M GL + + ++D+ +
Sbjct: 411 RMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLS 470
Query: 242 KCGAIKEALIVFHGVEKHQSDVLI 265
+ G + EA V + + +V +
Sbjct: 471 RAGHLYEAWDVIEKMPEKPDNVTL 494
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 157/437 (35%), Positives = 237/437 (54%), Gaps = 46/437 (10%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
+L + +I Y+ K+ + P +F +N +I+ YS ++ SL+ +M G SP+ +
Sbjct: 25 SLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHS 84
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ FL A L+ + +H K+G+ D+F +L+ MY G + AR+ FD M
Sbjct: 85 FTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMT 144
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ +WNSM+ GYA+CG++ A ++F LMP RNV SW+A+I GY + G Y +AL +F
Sbjct: 145 VRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLM 204
Query: 186 M-RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M + + NEVTL SVL ACA+LGAL+ G + Y G L + +L++MYA+CG
Sbjct: 205 MEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCG 264
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
I +A VF ++ + ++ WN+MI GLA+HG E++ELF +M G PD++TF+G+
Sbjct: 265 RIDKAWGVFEEIDGRR-NLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGV 323
Query: 305 LSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L AC HGG+V+E +FF+S+ + + PK EHY CMVD L P
Sbjct: 324 LLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLG------------------P 365
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
A L EL+P + G YV LSN+YA RWD R+
Sbjct: 366 GA-------------------------LFELEPSNPGNYVILSNIYATAGRWDGVARLRK 400
Query: 424 AMETRGVKKYPGWSFVE 440
M+ + K G+SF+E
Sbjct: 401 LMKGGKITKAAGYSFIE 417
>gi|255548718|ref|XP_002515415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545359|gb|EEF46864.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 163/486 (33%), Positives = 255/486 (52%), Gaps = 74/486 (15%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82
L + + WN +IR N ++I ++K+ G D+ T+P L KA+GR+ ++
Sbjct: 10 LPSSEVKKWNEIIRKQMHMGNGAQAILTYLKVQELGFHADNYTFPILLKAAGRICASKIG 69
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
A+H Q KTG+ + F+ +L++MYG+ I A +VF+ MP K ++WNSMLD YA
Sbjct: 70 FALHGQTIKTGFCAHAFVQTALVNMYGNLHCIGDAFKVFEIMPVKDLIAWNSMLDAYASN 129
Query: 143 GEMN-------------------------------MARQVFELMPERNVVSWSALIDGYV 171
+M+ +AR +F+ M R+ VSW+++I Y+
Sbjct: 130 AQMDYASNLFNSMPLKDISSFNIMISGYSTRGEAMLARSIFDSMEVRDFVSWNSMISAYI 189
Query: 172 KCGDYKEALVIF-------------------------------EEMRDVGSKANEVTLVS 200
+ GD ++ L +F EEM+ + +T+ S
Sbjct: 190 RAGDMEKGLALFREMPVKNTVTWNTMITGCLQSEHFGMVLDLFEEMKTANYIPDYLTVTS 249
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
VL C HLG+L G + Y ID GL + + T+LIDMY+KCG+I++ L VF +
Sbjct: 250 VLSTCGHLGSLGTGIKIHIYAIDNGLVSSPHVTTALIDMYSKCGSIEQGLHVF--CKSQV 307
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
D+ WNA+I LA+HG +L++F +M+ I PD+ITF+G+++AC+H GLV E
Sbjct: 308 KDIYCWNALISALALHGHGYAALKVFGKMRKNHIQPDDITFIGIINACSHSGLVQEGCQL 367
Query: 321 FKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
F S+ + G+ PK EHY CMV+ L R+G + A + I MP EP S+LG+LL+ C+ +
Sbjct: 368 FVSMQEDFGISPKLEHYGCMVNLLGRSGHLALALQVIETMPFEPGESILGALLSACIIYQ 427
Query: 380 KLDLAEIVGKKLVEL--QPDH---DGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
L+ G++++EL H DG + SN+YA W+EA RE M + G+ K
Sbjct: 428 DLE----TGERVIELVCSKAHYLSDGELMMFSNLYASCGNWEEANRWREMMNSTGIVKTA 483
Query: 435 GWSFVE 440
G+S +E
Sbjct: 484 GYSVIE 489
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 171/504 (33%), Positives = 257/504 (50%), Gaps = 80/504 (15%)
Query: 13 IDYSCKVLS---HLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+DYS + S H S+ I WN +IRGY+ + + I +F +M + G+ P + TYP++
Sbjct: 1 MDYSNLIFSQMGHDSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYV 60
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMY------------GSC------ 111
+ L VH +I K+G+ES ++NSL +MY +C
Sbjct: 61 INSCCELEWYGRGKRVHCEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYAR 120
Query: 112 ------------------------GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG---- 143
GD+ ARE+FD MP + VSWNSM+ GYAK G
Sbjct: 121 KIFDDMCVRPVELWNQMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVAN 180
Query: 144 ---------------------------EMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
++ AR FE MP+RNVVSW+++I Y K G +
Sbjct: 181 ARGLFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKF 240
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
E+L +F +M+ G + T VSVL AC++LG L+ G+ + Y+ + + T+L
Sbjct: 241 VESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGK-YIHYLSGDLSQSEVMVGTAL 299
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
+MYA+CG + +A VF + K DV WN +I LA+HG +E++++F M+ G+ P
Sbjct: 300 TEMYAQCGDVDKAFAVFIKIGKR--DVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKP 357
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEF 355
++ TF L AC+HGGLV E F S+ K ++PK HY C++D L R GQ+ EA
Sbjct: 358 NDFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLL 417
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
+ MP +P ++ G+LL GC G L LAE V +K E++ + G YV LSN++A +W
Sbjct: 418 VEDMPFQPDVAIWGALLGGCRVTGDLKLAEKVVEKATEMETNESGVYVLLSNIHASAGQW 477
Query: 416 DEARTTREAMETRGVKKYPGWSFV 439
EA R+ M+ + + K G S V
Sbjct: 478 IEAADARKKMDEKKISKKTGSSVV 501
>gi|449453704|ref|XP_004144596.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Cucumis sativus]
Length = 477
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 162/425 (38%), Positives = 243/425 (57%), Gaps = 11/425 (2%)
Query: 24 SNPR---IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE 80
SNP+ +NT+IR Y P ++ L+ +ML P+ T+P + K S +
Sbjct: 45 SNPKCLITLLYNTLIRAYLNFNRPRFALLLYTQMLSQQTKPNFHTFPSIIK-SATICSSL 103
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
L +HA K G +D + S + Y ++ AR+VFD + V++NSMLD +
Sbjct: 104 LPKLIHAHAFKIGVLTDPVVLTSFVSSYADLRELANARKVFDEITNPCIVAFNSMLDAFV 163
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS-KANEVTLV 199
K G++ A +F MPE +VVSW+++I+G+ G + EAL F M GS K NE T V
Sbjct: 164 KNGDLGSAVFMFRSMPEHDVVSWTSVINGFWWNGRFLEALWFFHVMMMSGSVKPNEATYV 223
Query: 200 SVLCACAHL---GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
SVL + A+L G L +G+ + Y+I ++ + T LID Y K G + A VF+ +
Sbjct: 224 SVLSSSANLDAEGVLCRGKEVHAYIIRNEGEFSVFIGTGLIDFYGKMGLLGCARTVFNQM 283
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
+K + V WNAMI A +G E+L+LF M++ GI P+E+TF+ +L+ACA G LV
Sbjct: 284 KKRE--VCTWNAMISSFASNGRETEALDLFATMKVEGIHPNEVTFVAILTACARGKLVKL 341
Query: 317 AWYFFKS-LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
F+S L +VP +EHY C+VD L +AG + EA EFI MP +P AS+LG+LL+ C
Sbjct: 342 GLQLFQSMLYDFSIVPITEHYVCVVDLLGKAGLLREATEFIESMPFDPDASVLGALLSAC 401
Query: 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPG 435
HG +L VG++L+E+QP H GRYV L+++ A ++W+ A R M ++K P
Sbjct: 402 KIHGATELGNEVGRRLLEMQPRHCGRYVTLASMNAGAEKWNRAAVIRRVMADARIQKTPA 461
Query: 436 WSFVE 440
+S V+
Sbjct: 462 YSRVD 466
>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 160/482 (33%), Positives = 244/482 (50%), Gaps = 74/482 (15%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WNTVI Y +S N ++ F M R G P+ +T + RL + +H ++
Sbjct: 175 WNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELI 234
Query: 91 KTGYESDLFISNSLIHMYGSC-------------------------------GDIVYARE 119
+G+ D FIS++L+ MYG C GDI+ +
Sbjct: 235 NSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQ 294
Query: 120 VFDGM------PTKMSVSW---------------------------------NSMLDGYA 140
+F M PT ++S +S++D Y
Sbjct: 295 LFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYF 354
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
KCG++ +A ++F+L+P+ VVSW+ +I GYV G EAL +F EMR +++ +T S
Sbjct: 355 KCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTS 414
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
VL AC+ L AL++G+ + +I+K L + +L+DMYAKCGA+ EA VF + K
Sbjct: 415 VLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKR- 473
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
D++ W +MI HG +LELF EM + PD + FL +LSAC H GLV E Y+
Sbjct: 474 -DLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYY 532
Query: 321 FKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP-LEPTASMLGSLLTGCMNH 378
F + G++P+ EHY+C++D L RAG++ EAYE + Q P + +L +L + C H
Sbjct: 533 FNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLH 592
Query: 379 GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSF 438
+DL + + L++ PD Y+ LSN+YA +WDE R R M+ G+KK PG S+
Sbjct: 593 RNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSW 652
Query: 439 VE 440
+E
Sbjct: 653 IE 654
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 118/454 (25%), Positives = 207/454 (45%), Gaps = 70/454 (15%)
Query: 14 DYSCKVLSHLSNP-RIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFLAK 71
D++ V ++ NP I WN ++ GY+K+ +++ LF K+L + PD TYP + K
Sbjct: 55 DHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFK 114
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A G L + L +H + KTG D+ + +SL+ MYG
Sbjct: 115 ACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYG---------------------- 152
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
KC A +F MPE++V W+ +I Y + G++K+AL F MR G
Sbjct: 153 ---------KCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGF 203
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ N VT+ + + +CA L L++G + +I+ G L + ++L+DMY KCG ++ A+
Sbjct: 204 EPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIE 263
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
+F + K V+ WN+MI G + G + ++LF M G+ P T L+ C+
Sbjct: 264 IFEQMPK--KTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRS 321
Query: 312 GLVMEAWY-----------------------FFK----SLGKR--GMVPKSE--HYACMV 340
++E + +FK L ++ ++PKS+ + M+
Sbjct: 322 ARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMI 381
Query: 341 DALSRAGQVTEAYEFICQMP---LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397
G++ EA +M +E A S+LT C L+ + + ++E + D
Sbjct: 382 SGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLD 441
Query: 398 HDGRYVG-LSNVYAIFKRWDEARTTREAMETRGV 430
++ +G L ++YA DEA + + + R +
Sbjct: 442 NNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDL 475
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
L+ +L AC + +L QG+++ + ++ GL + L +LI+ Y C A VF +E
Sbjct: 6 LLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNME 65
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTE-MQIVGITPDEITFLGLLSACAHGGL 313
+ ++ +WN ++ G + E+LELF + + + PD T+ + AC GGL
Sbjct: 66 -NPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKAC--GGL 119
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/468 (32%), Positives = 257/468 (54%), Gaps = 35/468 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKS-----------KNPNK------- 46
+A + +G I + + + NP + WN +I GY+++ K P K
Sbjct: 466 TAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAA 525
Query: 47 -------------SISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTG 93
++ L +++ R+G P ++ A + E+ +H+ KTG
Sbjct: 526 MIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTG 585
Query: 94 YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFE 153
+ + ++ N LI MY CG++ VF + K +VSWNS++ G ++ ++ AR VFE
Sbjct: 586 CQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFE 645
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
MP+R+VVSW+A+I YV+ G + AL +F +M G K N++T+ S+L AC +LGA+
Sbjct: 646 KMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKL 705
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
G + G L + SLI MY KCG ++ VF + +H D++ WNA++ G
Sbjct: 706 GEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEH--DLITWNAVLVGC 762
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPK 332
A +G KE++++F +M++ GI PD+++FLG+L AC+H GLV E W F S+ ++ G++P
Sbjct: 763 AQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPL 822
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV 392
HY CMVD L RAG ++EA I MP++P + + +LL C H ++L + V ++L
Sbjct: 823 VYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLF 882
Query: 393 ELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++ YV LSN++A WD+ R+ M+ +G+ K PG S+++
Sbjct: 883 QMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQ 930
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/415 (25%), Positives = 196/415 (47%), Gaps = 52/415 (12%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
L LG ++ + +V + + + WN++I GYS++ +++ LF A V + T+
Sbjct: 181 LGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLF----DAFVGKNIRTW 236
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
L + + E A V + E ++ N++I Y GD+ AR++FD MP
Sbjct: 237 TILLTGYAKEGRIEEAREVFESMT----ERNVVSWNAMISGYVQNGDLKNARKLFDEMPE 292
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
K SWNS++ GY C M+ AR++F+ MPERN VSW +I GYV DY EA +F +M
Sbjct: 293 KNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKM 352
Query: 187 RDVGSKANEVTLVSVLCACAHLGALD--------------QGRMML------RYMIDKGL 226
++ ++ V VL A L L+ +G +++ Y + L
Sbjct: 353 CRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSL 412
Query: 227 SL------TLPLQ-----TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAM 275
L T+P + T++I +A+CG + +A+ ++ V + V AM+ A
Sbjct: 413 DLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVP--EQTVATKTAMMTAYAQ 470
Query: 276 HGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEH 335
G ++++ +F E+ + P+ + + +++ G++ EA K L ++ V S
Sbjct: 471 VGRIQKARLIFDEI----LNPNVVAWNAIIAGYTQNGMLKEA----KDLFQKMPVKNSAS 522
Query: 336 YACMVDALSRAGQVTEAYEFICQMPLE---PTASMLGSLLTGCMNHGKLDLAEIV 387
+A M+ + + EA E + ++ P+ S S L+ C N G +++ ++
Sbjct: 523 WAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVI 577
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 146/312 (46%), Gaps = 37/312 (11%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK 91
+ ++ Y++ N S+ L + + ++ + A + + + A+ ++ ++
Sbjct: 400 SAILNAYTR----NGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVP- 454
Query: 92 TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQV 151
E + +++ Y G I AR +FD + V+WN+++ GY + G + A+ +
Sbjct: 455 ---EQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDL 511
Query: 152 FELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGAL 211
F+ MP +N SW+A+I G+V+ + +EAL + E+ GS ++ + S L ACA++G +
Sbjct: 512 FQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDV 571
Query: 212 DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS---------- 261
+ GR++ I G + LI MYAKCG +++ VF + +
Sbjct: 572 EIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGL 631
Query: 262 -------------------DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
DV+ W A+I G + +L+LF +M GI P+++T
Sbjct: 632 SENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVT 691
Query: 303 GLLSACAHGGLV 314
LLSAC + G +
Sbjct: 692 SLLSACGNLGAI 703
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 155/342 (45%), Gaps = 52/342 (15%)
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K ++ LF N+ I G G + AR VF+ M + VSWNSM++GY++ G+++ AR
Sbjct: 164 KETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARL 223
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F+ +N+ +W+ L+ GY K G +EA +FE M ++ N V+ +++ G
Sbjct: 224 LFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESM----TERNVVSWNAMISGYVQNGD 279
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L R + M +K ++ S++ Y C + EA +F + + S + W MI
Sbjct: 280 LKNARKLFDEMPEKNVA----SWNSVVTGYCHCYRMSEARELFDQMPERNS--VSWMVMI 333
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH-------------------- 310
G E+ ++F +M PD+ F+ +LSA
Sbjct: 334 SGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYE 393
Query: 311 -----GGLVMEAW----------YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
G ++ A+ +FF+++ +R + M+ A ++ G++ +A +
Sbjct: 394 GDVVVGSAILNAYTRNGSLDLAMHFFETMPERN----EYSWTTMIAAFAQCGRLDDAIQL 449
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397
++P E T + +++T G++ A ++ ++ L P+
Sbjct: 450 YERVP-EQTVATKTAMMTAYAQVGRIQKARLIFDEI--LNPN 488
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 176/507 (34%), Positives = 256/507 (50%), Gaps = 78/507 (15%)
Query: 10 LGNIDYSCKVLSHLS-NPRIFYWNTVIRGYSKS-KNPNKSISLFVKMLRAGVSPDHLTYP 67
L + YS + SH++ +P + +N ++R + + + ++ L+ +M +SP++ T+P
Sbjct: 62 LKDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFP 121
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
F+ A L + +A H ++ K G ++D NS++ MY CG+ AR+VFD + K
Sbjct: 122 FVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEK 181
Query: 128 MSVSWNSMLDGYAK---------------------------------CGE---MNMARQV 151
VSWNS+L GYAK CGE + + R V
Sbjct: 182 DLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWV 241
Query: 152 FELMPER----NVVSWSALIDGYVKCGDY------------------------------- 176
+ ER N SALI Y KCG+
Sbjct: 242 EGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMA 301
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
EA+ +F M++ G N+VTL +VL ACA +GALD G+ M Y +GL + + T+L
Sbjct: 302 DEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATAL 361
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG--I 294
IDMYAKCG+++ A VF+ + + WNAMI LA HG KE+L LF M G
Sbjct: 362 IDMYAKCGSLESAQRVFNDMPRKNDAS--WNAMISALASHGKAKEALSLFERMSDEGGSA 419
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAY 353
P++ITF+ LLSAC H GLV E + F + G+VPK EHY+CMVD LSRAG + EA+
Sbjct: 420 RPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAW 479
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413
+ I +MP +P LG+L + C +D+ E V + L+EL P + G Y+ S +Y
Sbjct: 480 DVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLN 539
Query: 414 RWDEARTTREAMETRGVKKYPGWSFVE 440
WD+A R M GV K PG S++E
Sbjct: 540 MWDDAARMRALMRENGVTKTPGCSWIE 566
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 117/264 (44%), Gaps = 34/264 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S S G + S ++ + + WN I Y+++ +++ISLF M GV P+ +
Sbjct: 262 SMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKV 321
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T + A + +L + G + D+F++ +LI MY CG + A+ VF+ M
Sbjct: 322 TLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDM 381
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
P K SWN+M+ A G+ KEAL +FE
Sbjct: 382 PRKNDASWNAMISALASHGKA-------------------------------KEALSLFE 410
Query: 185 EMRDVGSKA--NEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYA 241
M D G A N++T VS+L AC H G +D+G + M GL + + ++D+ +
Sbjct: 411 RMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLS 470
Query: 242 KCGAIKEALIVFHGVEKHQSDVLI 265
+ G + EA V + + +V +
Sbjct: 471 RAGHLYEAWDVIEKMPEKPDNVTL 494
>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 497
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 153/411 (37%), Positives = 227/411 (55%), Gaps = 39/411 (9%)
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMY------------ 108
PDHL+ F + RL +A +H+ + G+ D++I N+ + Y
Sbjct: 74 PDHLSISFSLHSCTRLPCHPIASLLHSFAVRLGHAGDVYIVNAAVSAYFTAADVASAERL 133
Query: 109 ---------------------GSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
GD+ AR FD MP + VSWN+ML YA G ++
Sbjct: 134 FSDTSKDVADVVTWTTMVAGHARAGDVERARWFFDAMPERNVVSWNAMLGAYASAGMLSE 193
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
AR++F+ M RN +WS+++ G V+ +EAL +F +M G NE LVSV+ ACA
Sbjct: 194 ARKLFDGMHSRNAATWSSMVTGLVQSDHCEEALRVFSDMVARGVVPNESILVSVISACAQ 253
Query: 208 LGALDQGRMMLRYMIDKGL--SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
L +L+ G + Y + + L S+++ L T+++DMY KCG I A+ VF + ++
Sbjct: 254 LRSLEHGVWVHAY-VKRELHGSMSVILATAIVDMYGKCGCIHNAIRVFAAMPVR--NIYS 310
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA-WYFFKSL 324
WN+MI GLAM+G ++L LF +MQ+ G+ P++ITF+GLL AC+H GLV E W F + +
Sbjct: 311 WNSMITGLAMNGREMQALSLFWKMQMAGVQPNDITFIGLLGACSHSGLVDEGRWLFNRMV 370
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
G+ P EHY MVD L RAG V EA +F+ MP+EP + G+L C HG+++L
Sbjct: 371 NDFGIQPVPEHYGLMVDLLGRAGLVKEAVDFVKNMPVEPHPGLWGALAGACNIHGEVELG 430
Query: 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPG 435
E + KKL+EL+P H RY+ LSN+Y RW++ T R ++ R V K G
Sbjct: 431 EEIAKKLIELEPRHGSRYILLSNIYGTSSRWEDMATVRRLIKERKVSKGTG 481
>gi|326513504|dbj|BAJ87771.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326524908|dbj|BAK04390.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 505
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 167/452 (36%), Positives = 252/452 (55%), Gaps = 24/452 (5%)
Query: 4 FSALSYLGNIDYSCKVLS-HL------SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR 56
F+A+S G++ + +LS HL S+ F++NT++RG + S +P +I LF M R
Sbjct: 53 FAAVSPAGDLRQAAAILSAHLPFISSASSHPAFFYNTLMRGLAASSSPGDAIGLFAAMRR 112
Query: 57 AGVSPDHLTYPFLAKASGRLAK-RELAVAVHAQIAKTGYESDL----FISNSLIHMYGSC 111
AG +PD T+ F+ K+ R R L +HAQ + G +L + N+L+H Y
Sbjct: 113 AGAAPDAFTFTFVLKSCSRCPSGRRLPSDLHAQAIRHGCLGELSAHTHVHNALLHAYACR 172
Query: 112 GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV 171
+ A VF+ +P + VS++ +L + K +++ AR VF+ MP R+VVSW+A+I Y
Sbjct: 173 AAVDDACRVFEEIPVRDVVSFSGLLTAHLKANDLHAARLVFDQMPHRDVVSWTAMISAYA 232
Query: 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
K +EAL +F+ M + +EVT+VS++ AC LG L G + R++ G +
Sbjct: 233 KACRPQEALALFDAM---PMQPDEVTMVSIVSACTTLGDLATGERVRRHIDSLGFGWMVS 289
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
L+ +L+DMYAKCG++ EA +F G+ + WN +I A HG + ++ +F +M
Sbjct: 290 LRNALMDMYAKCGSLPEARALFDGMTVRS--LASWNTLISAYASHGDLDNTIAVFYQMLA 347
Query: 292 VG--ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSE----HYACMVDALSR 345
G + PD +T L LL A H G V E F ++ +RG K E HY C+VD L R
Sbjct: 348 EGNTVKPDGVTLLALLIAYTHKGCVEEGRAMFNAM-QRGNFGKVELTVEHYGCVVDMLGR 406
Query: 346 AGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGL 405
AG++ EAY+ I QMP+ A + G+LL C HG +D+AE K+L L P+ G Y+ L
Sbjct: 407 AGKLEEAYQVIEQMPIPSNAVIWGALLGACRTHGDIDMAERAVKELRNLNPEEGGYYILL 466
Query: 406 SNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
S++YA R EA R AM RGV+K G S
Sbjct: 467 SDMYASAGRIAEATEIRHAMNERGVQKTTGRS 498
>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 786
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/437 (35%), Positives = 250/437 (57%), Gaps = 9/437 (2%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV-SPDHLTYPF 68
+G +D + ++ I WN++I G+++ +++ +F KMLR + SPD T
Sbjct: 225 VGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLAS 284
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK- 127
+ A L K + +H+ I TG++ + N+LI MY CG + AR + + TK
Sbjct: 285 VLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKD 344
Query: 128 MSVS-WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ + + ++LDGY K G+MN A+ +F + +R+VV+W+A+I GY + G Y EA+ +F M
Sbjct: 345 LKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSM 404
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
G + N TL ++L + L +L G+ + + G ++ + +LI MYAK G I
Sbjct: 405 VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNI 464
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
A F + + + D + W +MI LA HG +E+LELF M + G+ PD IT++G+ S
Sbjct: 465 TSASRAFDLI-RCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFS 523
Query: 307 ACAHGGLVMEAWYFF---KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
AC H GLV + +F K + K ++P HYACMVD RAG + EA EFI +MP+EP
Sbjct: 524 ACTHAGLVNQGRQYFDMMKDVDK--IIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEP 581
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
GSLL+ C H +DL ++ ++L+ L+P++ G Y L+N+Y+ +W+EA R+
Sbjct: 582 DVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRK 641
Query: 424 AMETRGVKKYPGWSFVE 440
+M+ VKK G+S++E
Sbjct: 642 SMKDGRVKKEQGFSWIE 658
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/436 (28%), Positives = 199/436 (45%), Gaps = 35/436 (8%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SA S G++D +C+ L W T+I GY +K+I + M++ G+ P
Sbjct: 87 LSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQ 146
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + + E VH+ I K G ++ +SNSL++MY CGD + A+ VFD
Sbjct: 147 FTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDR 206
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + SWN+M+ + + G+M++A FE M ER++V+W+++I G+ + G AL IF
Sbjct: 207 MVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIF 266
Query: 184 EEM-RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
+M RD + TL SVL ACA+L L G+ + +++ G ++ + +LI MY++
Sbjct: 267 SKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSR 326
Query: 243 CGAIKEA--LIVFHG-----------------------------VEKHQSDVLIWNAMIG 271
CG ++ A LI G V DV+ W AMI
Sbjct: 327 CGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIV 386
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
G HG E++ LF M G P+ T +LS + + S K G +
Sbjct: 387 GYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIY 446
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA-EIVGKK 390
++ ++AG +T A + E S++ HG + A E+
Sbjct: 447 SVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETM 506
Query: 391 LVE-LQPDHDGRYVGL 405
L+E L+PDH YVG+
Sbjct: 507 LMEGLRPDHI-TYVGV 521
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 172/357 (48%), Gaps = 44/357 (12%)
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
L L K+ + R A VH ++ K+G +++ N+L+++Y G ++AR++FD
Sbjct: 15 LCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDE 74
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
MP + + SWN++L Y+K G+M+ + F+ +P+R+ VSW+ +I GY G Y +A+ +
Sbjct: 75 MPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVM 134
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
+M G + + TL +VL + A ++ G+ + +++ GL + + SL++MYAKC
Sbjct: 135 GDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKC 194
Query: 244 GAIKEALIVFHGV-----------------------------EKHQSDVLIWNAMIGGLA 274
G A VF + + + D++ WN+MI G
Sbjct: 195 GDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFN 254
Query: 275 MHGFVKESLELFTEM-QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS 333
G+ +L++F++M + ++PD T +LSACA+ +E K + +
Sbjct: 255 QRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACAN----LEKLCIGKQIHSHIVTTGF 310
Query: 334 EHYACMVDAL----SRAGQVTEAYEFICQMPLEP------TASMLGSLLTGCMNHGK 380
+ +++AL SR G V A I Q + TA + G + G MN K
Sbjct: 311 DISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAK 367
>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
Length = 685
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 159/431 (36%), Positives = 236/431 (54%), Gaps = 10/431 (2%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
KV + I WN++I Y ++ +++++LFV+M++ G PD +T + A LA
Sbjct: 203 KVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLA 262
Query: 78 KRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
VH ++ K+ + D+ ++N+L+ MY CG A+ VFD M + VS SM+
Sbjct: 263 AGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMI 322
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
GYAK + A+ VF M E+NVV+W+ LI Y + +EAL +F ++
Sbjct: 323 TGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHY 382
Query: 197 TLVSVLCACAHLGALDQGRM----MLR--YMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
T +VL ACA+L L G+ +L+ + D G + + SL+DMY K G+I +
Sbjct: 383 TYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGA 442
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + D + WNAMI G A +G K++L LF M PD +T +G+LSAC H
Sbjct: 443 KVFERMAAR--DNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGH 500
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E +F+S+ + G++P +HY CM+D L RAG + E E I MP+EP A +
Sbjct: 501 SGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWA 560
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL C H +D+ E KL EL PD+ G YV LSN+YA +W + R +M+ RG
Sbjct: 561 SLLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRG 620
Query: 430 VKKYPGWSFVE 440
V K PG S++E
Sbjct: 621 VSKQPGCSWIE 631
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 39/273 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
N+ + V + + WN +I Y+ + +++ LFV++ R V P H TY +
Sbjct: 329 ANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVL 388
Query: 71 KASGRLAKRELAVAVHAQIAKTGY------ESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
A LA +L H + K G+ ESD+F+ NSL+ MY G I +VF+ M
Sbjct: 389 NACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERM 448
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ +VSWN+M+ GYA+ G K+AL++FE
Sbjct: 449 AARDNVSWNAMIVGYAQNGRA-------------------------------KDALLLFE 477
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKC 243
M + + VT++ VL AC H G + +GR + M D G+ T T +ID+ +
Sbjct: 478 RMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRA 537
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
G +KE + + + D ++W +++G +H
Sbjct: 538 GHLKEVEELIENMPM-EPDAVLWASLLGACRLH 569
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 146/312 (46%), Gaps = 26/312 (8%)
Query: 94 YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFE 153
+ + F+ N+L+ Y G + AR VFDGMP + + S+N++L A+ G + A +F
Sbjct: 46 FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
+P+ + S++A++ + G +AL M N + S L ACA A
Sbjct: 106 AIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRT 165
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
G + + + + T+L+DMYAKC +EA VF + + +++ WN++I
Sbjct: 166 GEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMP--ERNIVSWNSLITCY 223
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG----- 328
+G V E+L LF M G PDE+T ++SACA GL + G+ G
Sbjct: 224 EQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACA--GL---------AAGREGRQVHT 272
Query: 329 MVPKSEHY-------ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
+ KS+ + +VD ++ G+ EA +M + S S++TG +
Sbjct: 273 RMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSET-SMITGYAKSANV 331
Query: 382 DLAEIVGKKLVE 393
A+ V ++VE
Sbjct: 332 GDAQAVFLQMVE 343
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 29/197 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I KV ++ WN +I GY+++ ++ LF +ML + PD +T +
Sbjct: 436 GSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVL 495
Query: 71 KASGRLAKRELAVAVHAQIAKTGY-------ESDLFISNS-----LIHMYGSCGDIVYAR 118
A G H+ + K G E I +I + G G +
Sbjct: 496 SACG-----------HSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVE 544
Query: 119 EVFDGMPTKM-SVSWNSMLDGYAKCGEMNM----ARQVFELMPERNVVSWSALIDGYVKC 173
E+ + MP + +V W S+L ++M A ++FEL P+ N + L + Y +
Sbjct: 545 ELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLFELDPD-NSGPYVLLSNMYAEL 603
Query: 174 GDYKEALVIFEEMRDVG 190
G + + + M+ G
Sbjct: 604 GKWADVFRVRRSMKHRG 620
>gi|449528931|ref|XP_004171455.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g10330-like [Cucumis
sativus]
Length = 477
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 162/425 (38%), Positives = 243/425 (57%), Gaps = 11/425 (2%)
Query: 24 SNPR---IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE 80
SNP+ +NT+IR Y P ++ L+ +ML P+ T+P + K S +
Sbjct: 45 SNPKCLITLLYNTLIRAYLNFNRPRFALLLYTQMLSQQTKPNFHTFPSIIK-SATICSSL 103
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
L +HA K G +D + S + Y ++ AR+VFD + V++NSMLD +
Sbjct: 104 LPKLIHAHAFKIGVLTDPVVLTSFVSSYADLRELANARKVFDEITNPCIVAFNSMLDAFV 163
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS-KANEVTLV 199
K G++ A +F MPE +VVSW+++I+G+ G + EAL F M GS K NE T V
Sbjct: 164 KNGDLGSAVFMFRSMPEHDVVSWTSVINGFWWNGRFLEALWFFXVMMMSGSVKPNEATYV 223
Query: 200 SVLCACAHL---GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
SVL + A+L G L +G+ + Y+I ++ + T LID Y K G + A VF+ +
Sbjct: 224 SVLSSSANLDAEGVLCRGKEVHAYIIRNEGEFSVFIGTGLIDFYGKMGLLGCARTVFNQM 283
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
+K + V WNAMI A +G E+L+LF M++ GI P+E+TF+ +L+ACA G LV
Sbjct: 284 KKRE--VCTWNAMISSFASNGRETEALDLFATMKVEGIHPNEVTFVAILTACARGKLVKL 341
Query: 317 AWYFFKS-LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
F+S L +VP +EHY C+VD L +AG + EA EFI MP +P AS+LG+LL+ C
Sbjct: 342 GLQLFQSMLYDFSIVPITEHYVCVVDLLGKAGLLREATEFIESMPFDPDASVLGALLSAC 401
Query: 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPG 435
HG +L VG++L+E+QP H GRYV L+++ A ++W+ A R M ++K P
Sbjct: 402 KIHGATELGNEVGRRLLEMQPRHCGRYVTLASMNAGAEKWNRAAVIRRVMADARIQKTPA 461
Query: 436 WSFVE 440
+S V+
Sbjct: 462 YSRVD 466
>gi|326504712|dbj|BAK06647.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 658
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/433 (35%), Positives = 232/433 (53%), Gaps = 4/433 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPFL 69
G + + +V + W T+I GY ++ ++++ +V M+ + L
Sbjct: 224 GMLPMAAEVFGRIPERDAVSWLTIIDGYIRADCTSEALRAYVAMMAEVDTRGNAALLVDL 283
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
K R A +H I K G+++ F+ +LIH YGSC + AR F
Sbjct: 284 IKVCARHAAVLEGQQLHTVILKDGFDAHPFVQATLIHFYGSCDLLDIARMQFKLSDKSHI 343
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
SWN+++ G M+ ARQ+F+ MPER+ +SWS L+ GYV+ G +AL +F M
Sbjct: 344 ASWNALMSGLLHRNLMHEARQLFDDMPERDTISWSTLLSGYVQSGHSNKALQLFYLMLGA 403
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G + N+VTL S L A A G L+QGR + Y+I + LT L LIDMYAKCG++ +A
Sbjct: 404 GVEPNDVTLASTLSAVADSGMLEQGRFIHDYIISNSIQLTDNLSAGLIDMYAKCGSVADA 463
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ +F V+ S V WNA+I LA+HG SLELF E+Q I P+ +T++G+L+AC
Sbjct: 464 IQLFSHVKHKLSSVSPWNAIICSLAIHGHAHTSLELFLELQRTNIKPNSVTYIGVLNACC 523
Query: 310 HGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E + F+S+ + G+ P +HY CMVD L RAG + EA I MP+ +
Sbjct: 524 HAGLVTEGRHHFESMSREYGIQPTIKHYGCMVDLLGRAGHLEEAENLIQMMPMRSDVVIW 583
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM--E 426
GS+L HG + L E ++L ++ P+H V LSN++A RW+ R+ + E
Sbjct: 584 GSILAAARTHGNVALGEKAAEELAKIDPNHGASKVALSNIFAEAARWNNVSLVRKELQDE 643
Query: 427 TRGVKKYPGWSFV 439
+ ++ G S V
Sbjct: 644 DENMGRFSGSSGV 656
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 186/374 (49%), Gaps = 12/374 (3%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
++L+ G +D + +L+ + + TV+ +++ + ++++F ML V P+
Sbjct: 85 LASLARAGRLDLAQGMLAEMPQRDTVSYTTVLTALARAGHAEDAVAVFRGMLAQDVPPNE 144
Query: 64 LTYPFLAKASGRLAKRELAVAV-HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
+T + A L + + V V H + G L ++ +L+H Y + + +ARE+F+
Sbjct: 145 VTLAGVLTALA-LERPPVPVGVAHGVTVRRGLNGFLIVATNLVHAYAAASQVCFAREIFE 203
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
MP K +V+WN+ML+GY K G + MA +VF +PER+ VSW +IDGY++ EAL
Sbjct: 204 QMPDKNTVTWNAMLNGYLKAGMLPMAAEVFGRIPERDAVSWLTIIDGYIRADCTSEALRA 263
Query: 183 F-EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+ M +V ++ N LV ++ CA A+ +G+ + ++ G +Q +LI Y
Sbjct: 264 YVAMMAEVDTRGNAALLVDLIKVCARHAAVLEGQQLHTVILKDGFDAHPFVQATLIHFYG 323
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
C + A + F +K S + WNA++ GL + E+ +LF +M D I++
Sbjct: 324 SCDLLDIARMQFKLSDK--SHIASWNALMSGLLHRNLMHEARQLFDDMP----ERDTISW 377
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA---YEFICQ 358
LLS G +A F + G+ P A + A++ +G + + +++I
Sbjct: 378 STLLSGYVQSGHSNKALQLFYLMLGAGVEPNDVTLASTLSAVADSGMLEQGRFIHDYIIS 437
Query: 359 MPLEPTASMLGSLL 372
++ T ++ L+
Sbjct: 438 NSIQLTDNLSAGLI 451
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 106/222 (47%), Gaps = 11/222 (4%)
Query: 71 KASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYG---SCGDIVYAREVFDGMPT 126
K+ RL E +HA AK+G S+ F+ NSL+ Y S AR +FD +P
Sbjct: 17 KSGARLRHGE---QLHALAAKSGLLASNTFVRNSLLAFYARLPSPQAPALARHLFDEIPL 73
Query: 127 KM--SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ + N++L A+ G +++A+ + MP+R+ VS++ ++ + G ++A+ +F
Sbjct: 74 ALRDPAAHNTLLASLARAGRLDLAQGMLAEMPQRDTVSYTTVLTALARAGHAEDAVAVFR 133
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
M NEVTL VL A A + + +GL+ L + T+L+ YA
Sbjct: 134 GMLAQDVPPNEVTLAGVLTALALERPPVPVGVAHGVTVRRGLNGFLIVATNLVHAYAAAS 193
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELF 286
+ A +F + + + WNAM+ G G + + E+F
Sbjct: 194 QVCFAREIFE--QMPDKNTVTWNAMLNGYLKAGMLPMAAEVF 233
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 162/438 (36%), Positives = 242/438 (55%), Gaps = 4/438 (0%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L + Y+ V NP + +N++I+GYS S+ LF +M G+ PD
Sbjct: 48 ISVCGALDKMGYANLVFHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFSQMKNRGIWPDE 107
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T+ L K+ + + VH + G+E I +I +Y SCG + A++VFD
Sbjct: 108 FTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDE 167
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + + WN M+ G+ K G++ M ++F M +R+VVSW+++I G + G EAL +F
Sbjct: 168 MLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELF 227
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAK 242
EM D G + ++ T+V++L CA LGA+D G + Y + L + + SL+D Y K
Sbjct: 228 REMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCK 287
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG ++ A VF+ E Q +V+ WNAMI GL +G + +LF EM G+ P++ TF+
Sbjct: 288 CGILETAWRVFN--EMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFV 345
Query: 303 GLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
G+LS CAH GLV F S+ M PK EH+ CMVD L+R G + EA + + MP+
Sbjct: 346 GVLSCCAHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPM 405
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
P A + GSLL+ G + AE K+L+EL+P + G YV LSNVYA +WDE
Sbjct: 406 RPNAVLWGSLLSAYRTIGDVKHAECAVKELIELEPWNSGNYVLLSNVYAEDGKWDEVEKV 465
Query: 422 REAMETRGVKKYPGWSFV 439
R M+ + ++K PG S V
Sbjct: 466 RALMKEKNIRKNPGQSMV 483
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 83/370 (22%), Positives = 149/370 (40%), Gaps = 66/370 (17%)
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
L GR + +L +HA I + I + I + G+ + YA VF
Sbjct: 12 ILRHLHGRKTRTQLP-QIHAHILRHHLHQSNQILSHFISVCGALDKMGYANLVFHQTQNP 70
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+ +NSM+ GY+ CG P N +L++F +M+
Sbjct: 71 NLLLFNSMIKGYSLCG------------PSEN-------------------SLLLFSQMK 99
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
+ G +E T +L +C+ + G+ + +I G ++ +ID+Y CG ++
Sbjct: 100 NRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRME 159
Query: 248 EALIVFHGV-----------------------------EKHQSDVLIWNAMIGGLAMHGF 278
+A VF + + V+ WN+MI GL G
Sbjct: 160 DAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGR 219
Query: 279 VKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV-MEAWYFFKSLGKRGMVPKSEHYA 337
E+LELF EM G PD+ T + +L CA G V + W + R +
Sbjct: 220 DGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGN 279
Query: 338 CMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQ 395
+VD + G + A+ +MP + S ++++G +GK +L + ++++ ++
Sbjct: 280 SLVDFYCKCGILETAWRVFNEMPQKNVVS-WNAMISGLTFNGKGELGADLFEEMINKGVR 338
Query: 396 PDHDGRYVGL 405
P+ D +VG+
Sbjct: 339 PN-DATFVGV 347
>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 566
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 173/452 (38%), Positives = 249/452 (55%), Gaps = 48/452 (10%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRI--FYWNTVIRGYSKSKNPN---KSISLFVKML 55
+ +F+A S G+++Y+ +L+ +NP + +Y+NT+IR YS + NP +++SLF+ ML
Sbjct: 23 LFTFAAQSPSGDLNYARLLLN--TNPSLNSYYYNTIIRAYSHTSNPTHHFQALSLFIFML 80
Query: 56 RAGVS---PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG 112
+ + PD TY F K+ GRL + A +H I K G+ DL+I N+LIHMY G
Sbjct: 81 QPHTNVPKPDTFTYSFALKSCGRLKLTQQAKQLHGFINKMGFGFDLYIQNALIHMYSEIG 140
Query: 113 DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVK 172
++V AR+VFD M + VSW SM I G+V
Sbjct: 141 ELVIARQVFDRMSHRDVVSWTSM-------------------------------IAGFVN 169
Query: 173 CGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPL 232
EA+ +F+ M +VG NE T++SVL CA GAL GR + + +KG+ +
Sbjct: 170 HHLTVEAIQLFQRMLEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKANV 229
Query: 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292
T+LI MY+KCG ++ A VF V DV +W AMI GLA HG KE++ELF EM+
Sbjct: 230 CTALIHMYSKCGCLESAREVFDDVL--DRDVFVWTAMIYGLACHGMCKEAIELFLEMETC 287
Query: 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTE 351
+ PDE T + +LSA + GLV E + FF + KR M P +H+ CMVD L++ G + E
Sbjct: 288 NVKPDERTIMVVLSAYRNAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEE 347
Query: 352 AYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ--PDHD-GRYVGLSNV 408
A +FI MP++P A + +L+ C H + AE + K L ELQ HD G Y+ SNV
Sbjct: 348 AEDFINAMPMKPDAVIWRTLIWACKVHADTERAERLMKHL-ELQGMSAHDSGSYILASNV 406
Query: 409 YAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
YA +W + RE M +G+ K PG S +E
Sbjct: 407 YASTGKWCDKAEVRELMNKKGLVKPPGSSRIE 438
>gi|357131531|ref|XP_003567390.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Brachypodium distachyon]
Length = 531
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 223/365 (61%), Gaps = 12/365 (3%)
Query: 86 HAQIAKTGYESDLFIS---------NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
HA++A LF S N+++ +Y + GD AR VFD MPT+ S SW+ ++
Sbjct: 158 HARLASVPAAESLFTSMPSRTQVSWNAMVVVYVNAGDFASARLVFDEMPTRDSSSWSVLI 217
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
GY K G M AR++F+ MP +N+V+W+A+I+GY +CG KE++ +F E+ VG + +
Sbjct: 218 VGYCKRGSMQSARELFDKMPGKNLVTWTAMINGYAQCGRPKESISLFRELEAVGIEPDAA 277
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
T+V V+ + + +G+ + Y+ K + + T+L+DM+AKCG +++AL F +
Sbjct: 278 TMVGVISSASQIGSTALAGWVGNYVDRKRIERNEKVLTALVDMHAKCGNVEQALNCFREI 337
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV-M 315
E Q D + A+I GLA HG +L++F M+ + PD ITF+G+L+AC+H GLV M
Sbjct: 338 E--QPDAYPYTALISGLATHGHSTLALQVFERMRAQAVRPDPITFVGVLTACSHAGLVDM 395
Query: 316 EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
Y+ + GM +++HYAC+VD L RAG++ EA++ + MP+ P LG+LL+ C
Sbjct: 396 GLDYWEAMVQDYGMDRRADHYACVVDMLGRAGRIVEAFDMVQTMPMGPHPGALGALLSAC 455
Query: 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPG 435
H +++AEIV KL EL+P + G Y+ LSN+YA ++W+EA R M T+ K PG
Sbjct: 456 KTHDNVEIAEIVANKLFELEPRNTGNYILLSNIYAGKEQWEEAERIRSLMRTKLPFKQPG 515
Query: 436 WSFVE 440
++VE
Sbjct: 516 STWVE 520
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 99/241 (41%), Gaps = 32/241 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + ++ + + W +I GY++ P +SISLF ++ G+ PD T +
Sbjct: 224 GSMQSARELFDKMPGKNLVTWTAMINGYAQCGRPKESISLFRELEAVGIEPDAATMVGVI 283
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
++ ++ LA V + + E + + +L+ M+ CG++ A F + +
Sbjct: 284 SSASQIGSTALAGWVGNYVDRKRIERNEKVLTALVDMHAKCGNVEQALNCFREIEQPDAY 343
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+ +++ G A G +A QV FE MR
Sbjct: 344 PYTALISGLATHGHSTLALQV-------------------------------FERMRAQA 372
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ + +T V VL AC+H G +D G M+ D G+ ++DM + G I EA
Sbjct: 373 VRPDPITFVGVLTACSHAGLVDMGLDYWEAMVQDYGMDRRADHYACVVDMLGRAGRIVEA 432
Query: 250 L 250
Sbjct: 433 F 433
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 170/499 (34%), Positives = 257/499 (51%), Gaps = 73/499 (14%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+DY+ K+ + +F WNT+IRGY+ + ++++L+ M AG+ PD+ T+PF+ ++
Sbjct: 78 MDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRS 137
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
L+ VH I K G++SD+F+ +SL+ MY G+ + VF M + VSW
Sbjct: 138 CAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSW 197
Query: 133 NSMLDGYAK----------------CGEMNMARQVFELMP-------------------- 156
+++ GY + G A + ++P
Sbjct: 198 TAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIK 257
Query: 157 ---ERNVVSWSALIDGYVKCGDYKEALVIFE-----------------EMRDVGSKA--- 193
+ +V +ALI Y KCG+ + A +F+ E + G+ A
Sbjct: 258 LGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKL 317
Query: 194 -----------NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
+ +T+VSV+ ACA LGAL+ GR M + KGL + + + +LIDMYAK
Sbjct: 318 FRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAK 377
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG I A VF + V+ W +MIG A HG +++L+LF+ M+ G+ P+ TF
Sbjct: 378 CGNIDLAREVFERLPCRS--VVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFA 435
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+ +AC H GLV E F+S+ + ++P EH ACMVD L RAG + EAYEFI +MP+
Sbjct: 436 AVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPV 495
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
EP S+ G+LL C H L+LAE+V +KL L P YV +SN+YA RW++A
Sbjct: 496 EPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARL 555
Query: 422 REAMETRGVKKYPGWSFVE 440
R+ ME R +KK PG S VE
Sbjct: 556 RKLMEERELKKIPGHSLVE 574
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 6/221 (2%)
Query: 91 KTGYESDLFISNSLIHMYGSCGDI--VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
+T Y S F N L++ S D+ ++A V +G + +S ++ M+ A
Sbjct: 24 RTNYHSRSF--NYLLNCCSSLPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYA 81
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
R++F+ MP+R+V W+ LI GY G +EAL ++ M G + T V+ +CA L
Sbjct: 82 RKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVL 141
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
AL +G+ + ++ G + +Q+SL+ MY++ G +VF E +++ W A
Sbjct: 142 SALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFG--EMVVRNIVSWTA 199
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+I G + + KE L +F EM G P+ +T + +L ACA
Sbjct: 200 VIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACA 240
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 149/432 (34%), Positives = 245/432 (56%), Gaps = 34/432 (7%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+ ++D++ ++ + P I +NT+ RGY++ +P ++I L ++L +G+ PD T+ L
Sbjct: 82 IASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSL 141
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA RL E +H K G ++++ +LI+MY +C D+
Sbjct: 142 LKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDV--------------- 186
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+ AR+VF+ + E VV+++A+I + EAL +F E+++
Sbjct: 187 ----------------DAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQES 230
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G K +VT++ L +CA LGALD GR + Y+ G + + T+LIDMYAKCG++ +A
Sbjct: 231 GLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDA 290
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ VF + + D W+AMI A HG +++ + EM+ + PDEITFLG+L AC+
Sbjct: 291 VSVFKDMPRR--DTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACS 348
Query: 310 HGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E + +F S+ G+VP +HY CM+D L RAG++ EA +FI ++P++PT +
Sbjct: 349 HTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILW 408
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+LL+ C +HG +++A++V +++ EL H G YV LSN+ A RWD+ R+ M +
Sbjct: 409 RTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDK 468
Query: 429 GVKKYPGWSFVE 440
G K PG S +E
Sbjct: 469 GALKVPGCSSIE 480
>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 748
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/420 (36%), Positives = 241/420 (57%), Gaps = 7/420 (1%)
Query: 26 PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAV 85
P + WN ++ G+ + ++++ +F ML G PD T + A G L + V
Sbjct: 203 PNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQV 262
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
H + K G SD F+ ++++ MYG CG + VFD + S N+ L G ++ G +
Sbjct: 263 HGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMV 322
Query: 146 NMARQVFELMPER----NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
+ A +VF ++ NVV+W+++I + G EAL +F +M+ G + N VT+ S+
Sbjct: 323 DTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSL 382
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
+ AC ++ AL G+ + + + +G+ + + ++LIDMYAKCG I+ A F +
Sbjct: 383 IPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSA--L 440
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
+++ WNA++ G AMHG KE++E+F M G PD +TF +LSACA GL E W +
Sbjct: 441 NLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCY 500
Query: 322 KSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
S+ + G+ PK EHYAC+V LSR G++ EAY I +MP EP A + G+LL+ C H
Sbjct: 501 NSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNN 560
Query: 381 LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L L EI +KL L+P + G Y+ LSN+YA WDE RE M+++G++K PG+S++E
Sbjct: 561 LSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIE 620
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 188/363 (51%), Gaps = 9/363 (2%)
Query: 1 MLSF--SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG 58
+LSF +ALS L S + SHL +P +F ++++I +++S + ++ F +
Sbjct: 41 LLSFYANALS-LSTPQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLR 99
Query: 59 VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
+ PD P K+ L + +HA A +G+ +D +++SL HMY C I+ AR
Sbjct: 100 LIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDAR 159
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP----ERNVVSWSALIDGYVKCG 174
++FD MP + V W++M+ GY++ G + A+++F M E N+VSW+ ++ G+ G
Sbjct: 160 KLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNG 219
Query: 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT 234
Y EA+ +F M G + T+ VL A L + G + Y+I +GL + +
Sbjct: 220 FYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVS 279
Query: 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
+++DMY KCG +KE VF VE+ + L NA + GL+ +G V +LE+F + + +
Sbjct: 280 AMLDMYGKCGCVKEMSRVFDEVEEMEIGSL--NAFLTGLSRNGMVDTALEVFNKFKDQKM 337
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
+ +T+ ++++C+ G +EA F+ + G+ P + ++ A + E
Sbjct: 338 ELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKE 397
Query: 355 FIC 357
C
Sbjct: 398 IHC 400
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 52/262 (19%), Positives = 108/262 (41%), Gaps = 16/262 (6%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I + + +S + WN V++GY+ +++ +F ML++G PD +T+ +
Sbjct: 425 GRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVL 484
Query: 71 KASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A + E + +++ G E + L+ + G + A + MP +
Sbjct: 485 SACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPD 544
Query: 130 VS-WNSMLDGYAKCGEMNM----ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
W ++L +++ A ++F L P N ++ L + Y G + E I E
Sbjct: 545 ACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPT-NPGNYILLSNIYASKGLWDEENRIRE 603
Query: 185 EMRDVGSKANE-VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
M+ G + N + + V L A DQ ++ +++K L + ++ K
Sbjct: 604 VMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMK--------KS 655
Query: 244 GAIKEALIVFHGVEKHQSDVLI 265
G + + V VE+ + ++
Sbjct: 656 GYLPKTNFVLQDVEEQDKEQIL 677
>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
Length = 606
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 160/436 (36%), Positives = 240/436 (55%), Gaps = 39/436 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYW-NTVIRGYSKSKNPNKS-----ISLFVKMLRAGVSPDHL 64
++ Y+ +V + +P W NT++RGY++S NP+ S + +FV+ML GV+PD
Sbjct: 75 AHLAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTY 134
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T+ L KA E HA K G ++ +LI+MY
Sbjct: 135 TFVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMY---------------- 178
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
A+CG+ AR +F VVS++A+I V+ EALV+F
Sbjct: 179 ---------------AECGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFR 223
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
EM+ G K VT++SVL ACA LGAL+ GR + Y+ GL + + T+LIDMYAKCG
Sbjct: 224 EMQGKGLKPTSVTVISVLSACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCG 283
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
++++A+ VF G+E D W+ MI A HG+ +E++ LF EM+ G+ PD+ITFLG+
Sbjct: 284 SLEDAIDVFQGME--SKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGV 341
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
L AC+H GLV E +F + G+VP +HY C+ D L+R+GQ+ AY+FI ++P+ PT
Sbjct: 342 LYACSHSGLVSEGLQYFDDMKDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPT 401
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
+ +LL+ C HG +L + V +++++L H G YV SN+ A W+E R+
Sbjct: 402 PILWRTLLSACGGHGDFELGKRVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKL 461
Query: 425 METRGVKKYPGWSFVE 440
M +GV K PG S +E
Sbjct: 462 MSEKGVVKVPGCSSIE 477
>gi|297721835|ref|NP_001173281.1| Os03g0169300 [Oryza sativa Japonica Group]
gi|19071631|gb|AAL84298.1|AC073556_15 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
gi|108706397|gb|ABF94192.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125585070|gb|EAZ25734.1| hypothetical protein OsJ_09569 [Oryza sativa Japonica Group]
gi|215769145|dbj|BAH01374.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674238|dbj|BAH92009.1| Os03g0169300 [Oryza sativa Japonica Group]
Length = 510
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 170/454 (37%), Positives = 256/454 (56%), Gaps = 22/454 (4%)
Query: 1 MLSFSALSYLGNIDYSCKVLS-HL------SNPRIFYWNTVIRGYSKSKNPNKSISLFVK 53
+L F+A+S G++ ++ +LS HL S+ F++NT++RG + S +P +I LF
Sbjct: 52 LLRFAAVSPAGDLRHAAALLSLHLPFLSSASSHLAFFYNTLMRGLAASSSPAAAIELFSA 111
Query: 54 MLRAGVSPDHLTYPFLAKASGR-LAKRELAVAVHAQIAKTGY----ESDLFISNSLIHMY 108
M RAG +PD T+ F K+ R +++R L +HAQ K G S + + N+L+H Y
Sbjct: 112 MRRAGAAPDAFTFTFALKSCSRCVSQRRLPSDLHAQAIKHGCLGAGSSHVHVHNALLHGY 171
Query: 109 GSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALID 168
S + AR VFD MP + +S++ +L + K +++ AR VF+ MP R+VVSW+A+I
Sbjct: 172 SSRAAVGDARRVFDEMPARDVISFSGLLTLHLKANDLDAARVVFDQMPHRDVVSWTAMIS 231
Query: 169 GYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL 228
Y + +EAL +F+ M + +EVT++SV+ AC LG L G + +Y+ G
Sbjct: 232 AYARARRPQEALALFDAM---PVQPDEVTMLSVVSACTALGDLATGERVCQYVDSNGFGW 288
Query: 229 TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288
+ L+ +L+DMYAKCG++ EA +F G+ + WN I A HG V+ ++ LF
Sbjct: 289 MVSLRNALMDMYAKCGSLTEARNLFDGMTVRS--LASWNTFISAYASHGDVESTVALFHR 346
Query: 289 MQIVG--ITPDEITFLGLLSACAHGGLVMEAWYFFKSL--GKRGMVPKS-EHYACMVDAL 343
M G + PD T L +L+A AH G V E F ++ G G V + EHY CMVD L
Sbjct: 347 MLADGKSVKPDGTTLLAVLTAYAHKGFVEEGRAMFNAILSGNYGKVDLTIEHYGCMVDLL 406
Query: 344 SRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYV 403
RAGQ+ EAY+ I QMP+ + + G+LL C HG +++AE +KL L P+ G Y+
Sbjct: 407 GRAGQLEEAYKMIEQMPIPSNSVVWGALLGACRTHGDINMAERAVQKLRSLNPEEGGYYI 466
Query: 404 GLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
LS++YA R EA R M G +K G S
Sbjct: 467 LLSDMYAASGRTTEAMEIRRIMNQAGARKTAGQS 500
>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 572
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/442 (34%), Positives = 241/442 (54%), Gaps = 35/442 (7%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+++ AL+ G++DY+C + + + P F +NT+IRG +++ L+V M+ GV
Sbjct: 36 LVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRGNVNDMKLEEALLLYVDMIERGVE 95
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD TYPF+ KA L + + VH + K G E D+ + NSLI+MYG
Sbjct: 96 PDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGDVIVQNSLINMYG----------- 144
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
KCGE+ A VF M E++V SWSA+I + + E L
Sbjct: 145 --------------------KCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECL 184
Query: 181 VIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
++ +M G + E TLV+VL AC HLG+ D G+ + ++ L + ++TSLIDM
Sbjct: 185 MLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDM 244
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y K G +++ L VF + + + + MI GLA+HG KE+L++F+EM G+ PD++
Sbjct: 245 YVKSGCLEKGLRVFKNMS--EKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDV 302
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
++G+ SAC+H GLV E FKS+ + + P +HY CMVD L R G + EAYE I
Sbjct: 303 VYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKS 362
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
M ++P + SLL+ C H L++ +I + L L ++ G Y+ L+N+YA ++WD+
Sbjct: 363 MSIKPNDVIWRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDV 422
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R + R + + PG+S +E
Sbjct: 423 AKIRTKLAERNLVQTPGFSLIE 444
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 156/431 (36%), Positives = 233/431 (54%), Gaps = 34/431 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I+ + +V ++ + W +I GY+++ N + LF M G+ PD +TY +
Sbjct: 308 GSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIM 367
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A A A +H+Q+ G+ +DL +S +L+HMY
Sbjct: 368 NACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMY---------------------- 405
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
AKCG + ARQVF+ MP R+VVSWSA+I YV+ G EA F M+
Sbjct: 406 ---------AKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSN 456
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ + VT +++L AC HLGALD G + I L +PL +LI M AK G+++ A
Sbjct: 457 IEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERAR 516
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F + + DV+ WNAMIGG ++HG +E+L LF M P+ +TF+G+LSAC+
Sbjct: 517 YIFDTMVRR--DVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSR 574
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
G V E FF L + RG+VP + Y CMVD L RAG++ EA I MP++PT+S+
Sbjct: 575 AGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWS 634
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL C HG LD+AE ++ + + P YV LS++YA W+ R+ ME+RG
Sbjct: 635 SLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRG 694
Query: 430 VKKYPGWSFVE 440
++K G +++E
Sbjct: 695 IRKEQGCTWIE 705
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 106/176 (60%), Gaps = 2/176 (1%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
N+++ Y+ CG + ARQ+F+ + + VV+W+ALI GY + G KEA +F +M D G +
Sbjct: 96 NTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLE 155
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ +T +SVL AC+ L+ G+ + ++ G + T+L+ MY K G++ +A V
Sbjct: 156 PSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQV 215
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
F G+ H DV +N M+GG A G +++ ELF MQ VG+ P++I+FL +L C
Sbjct: 216 FDGL--HIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGC 269
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 109/439 (24%), Positives = 182/439 (41%), Gaps = 114/439 (25%)
Query: 53 KMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG 112
++ G D TY L + L L V I + G + +++ N+LI +Y CG
Sbjct: 47 RLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICG 106
Query: 113 DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNV------------ 160
++ AR++FD + K V+WN+++ GYA+ G + A +F M + +
Sbjct: 107 NVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLD 166
Query: 161 -------VSW--------------------SALIDGYVKCG------------------- 174
++W +AL+ YVK G
Sbjct: 167 ACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVST 226
Query: 175 ------------DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI 222
D+++A +F M+ VG K N+++ +S+L C AL G+ + +
Sbjct: 227 FNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCM 286
Query: 223 DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKES 282
+ GL + + TSLI MY CG+I+ A VF ++ DV+ W MI G A +G ++++
Sbjct: 287 NAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVR--DVVSWTVMIEGYAENGNIEDA 344
Query: 283 LELFTEMQIVGITPDEITFLGLLSACA------HG------------------------- 311
LF MQ GI PD IT++ +++ACA H
Sbjct: 345 FGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHM 404
Query: 312 ----GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPT 364
G + +A F ++ +R +V ++ M+ A G TEA+E M +EP
Sbjct: 405 YAKCGAIKDARQVFDAMPRRDVVS----WSAMIGAYVENGYGTEAFETFHLMKRSNIEPD 460
Query: 365 ASMLGSLLTGCMNHGKLDL 383
+LL C + G LD+
Sbjct: 461 GVTYINLLNACGHLGALDV 479
>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
Length = 733
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 152/460 (33%), Positives = 242/460 (52%), Gaps = 27/460 (5%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S S GN++ + + + +F W +VI ++ N+ ++LF M V PD
Sbjct: 277 LSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDG 336
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+ + G A H I + Y D ++N+L+ MY G + A ++FDG
Sbjct: 337 IVVSCILLGFGNSMMVREGKAFHGLIVRRNYVLDDTVNNALLSMYCKFGTLNPAEKLFDG 396
Query: 124 MPTKMSVSWNSMLDGYAKC------------------------GEMNMARQVFELMPERN 159
+ SWN+M+ GY C G +++A ++F +R+
Sbjct: 397 VHEWSKESWNTMVFGYVHCYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMF-CRTQRD 455
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
VV+W+ LI Y G Y EA+ +F+EM N TLV VL AC HL +L++G+M+ +
Sbjct: 456 VVTWNTLISSYTHSGHYAEAITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQ 515
Query: 220 YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
Y+ + G L + L T+L+DMYAKCG ++++ +F+ ++ + DV+ WN MI G +HG
Sbjct: 516 YIKEGGFELNVSLGTALVDMYAKCGQLEQSRELFNSMK--EKDVISWNVMISGYGLHGDA 573
Query: 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACM 339
++E+F +M+ + P+ ITFL LLSAC H G V E F + + P +H+ACM
Sbjct: 574 NSAMEVFQQMEQSNVKPNAITFLSLLSACTHAGYVDEGKQLFDRMQYYSIKPNLKHFACM 633
Query: 340 VDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399
D L R+G + EA + + MP+ P + G+LL+ C H ++++ V K +E P++D
Sbjct: 634 ADLLGRSGNLQEAEDLVQSMPICPDGGVWGTLLSACKIHNEIEIGIRVAKCAIESDPEND 693
Query: 400 GRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
G Y+ LSN+Y +WDEA RE M+ RG+ K GWS V
Sbjct: 694 GYYIMLSNMYGSMGKWDEAERARELMKERGIGKRAGWSAV 733
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 145/318 (45%), Gaps = 35/318 (11%)
Query: 16 SCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGR 75
S V + F WN++I+ + + N K+ +++M P+ T P +
Sbjct: 83 STYVFDSTNQKDTFLWNSIIKSHFSNGNYFKAFDFYIQMRYDNTPPNQFTIPMIVATCAE 142
Query: 76 LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSM 135
L E +H ++K+G LF NS + GS VY
Sbjct: 143 LLWLEEGKYIHGLVSKSG----LFAENSAV---GS--SFVYM------------------ 175
Query: 136 LDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV---GSK 192
YAKCG M A +F+ + R+VVSW+AL+ GYV D ++ L EMR + G K
Sbjct: 176 ---YAKCGVMEDASLMFDEIVVRDVVSWTALVIGYVHNDDSEKGLECLCEMRRIGGDGEK 232
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
N TL AC +LGA+ GR + + GL + +Q+SL+ MY+KCG ++EA
Sbjct: 233 VNSRTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNS 292
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F V DV W ++IG A GF+ E L LF +MQ+ + PD I +L +
Sbjct: 293 FCQVV--DKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSM 350
Query: 313 LVMEAWYFFKSLGKRGMV 330
+V E F + +R V
Sbjct: 351 MVREGKAFHGLIVRRNYV 368
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 144/363 (39%), Gaps = 44/363 (12%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA---KASGRLAKRELAVAVHA 87
W ++ GY + + K + +M R G + + L +A G L +H
Sbjct: 200 WTALVIGYVHNDDSEKGLECLCEMRRIGGDGEKVNSRTLEGGFQACGNLGAMIAGRCLHG 259
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
KTG + +SL+ MY CG++ A F + K SW S++ A+ G MN
Sbjct: 260 LAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARFGFMNE 319
Query: 148 ARQVF------ELMPERNVVSWSALIDG---YVKCGDYKEALVIFEE--MRDVGSKANEV 196
+F ++ P+ VVS L G V+ G L++ + D + A
Sbjct: 320 CLNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAFHGLIVRRNYVLDDTVNNA--- 376
Query: 197 TLVSVLCACAHLGALDQGRMMLR--------------------YMIDKGLSLTLPLQTSL 236
L+S+ C G L+ + Y+I + + + SL
Sbjct: 377 -LLSMYCK---FGTLNPAEKLFDGVHEWSKESWNTMVFGYVHCYIIKNSVDEDVSIANSL 432
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
IDMY K G + A +F + Q DV+ WN +I G E++ LF EM + P
Sbjct: 433 IDMYGKGGNLSIAWKMFC---RTQRDVVTWNTLISSYTHSGHYAEAITLFDEMISEKLNP 489
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFI 356
+ T + +LSAC H + + + + + G +VD ++ GQ+ ++ E
Sbjct: 490 NSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTALVDMYAKCGQLEQSRELF 549
Query: 357 CQM 359
M
Sbjct: 550 NSM 552
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 122/278 (43%), Gaps = 37/278 (13%)
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
HA I TG +++FIS+ LI +Y S + VFD
Sbjct: 52 HALIITTGNANNVFISSKLISLYASFRKPHSSTYVFDSTN-------------------- 91
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
+++ W+++I + G+Y +A + +MR + N+ T+ ++ C
Sbjct: 92 -----------QKDTFLWNSIIKSHFSNGNYFKAFDFYIQMRYDNTPPNQFTIPMIVATC 140
Query: 206 AHLGALDQGRMMLRYMIDKGL-SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
A L L++G+ + + GL + + +S + MYAKCG +++A ++F E DV+
Sbjct: 141 AELLWLEEGKYIHGLVSKSGLFAENSAVGSSFVYMYAKCGVMEDASLMFD--EIVVRDVV 198
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI---TFLGLLSACAHGGLVMEAWYFF 321
W A++ G + ++ LE EM+ +G +++ T G AC + G ++
Sbjct: 199 SWTALVIGYVHNDDSEKGLECLCEMRRIGGDGEKVNSRTLEGGFQACGNLGAMIAGRCLH 258
Query: 322 KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
K G+ + ++ S+ G V EA+ CQ+
Sbjct: 259 GLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQV 296
>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 158/434 (36%), Positives = 234/434 (53%), Gaps = 34/434 (7%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G I +CKV + + WN +I ++ K+I +F++M R G T
Sbjct: 44 SKCGLIRRACKVFDEIPERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVS 103
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A +HA K ++D+F+ +LI
Sbjct: 104 SVVCACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALI---------------------- 141
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
D YAKCG + A VFE MPERN V+WS+++ G+V+ Y+E LV+F +
Sbjct: 142 ---------DVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGK 192
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
++G + N+ + SV+ ACA L AL +GR + + G + ++L+DMYAKCG+I+
Sbjct: 193 EMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIE 252
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
EA ++F +EK +V++WNA+I G A H E + LF EMQ G+ PDE+T++ +LSA
Sbjct: 253 EAYVLFCNIEK--KNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSA 310
Query: 308 CAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C H GLV + +F + + V P HY+CMVD L R G V EA+E + +MP TAS
Sbjct: 311 CVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHELMTKMPFAATAS 370
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
M GSLL C HG L+LAEI K L E++PD G YV L+N YA K+W+EA R++++
Sbjct: 371 MWGSLLASCRIHGNLELAEIAAKNLFEMEPDRGGNYVLLANTYAASKKWEEAAKARKSLK 430
Query: 427 TRGVKKYPGWSFVE 440
+ K G S++E
Sbjct: 431 GSEILKERGKSWIE 444
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 150/296 (50%), Gaps = 34/296 (11%)
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
A H Q+ + G E+D SN L++MY +KCG
Sbjct: 19 ACHGQVIRLGLETDTLTSNMLMNMY-------------------------------SKCG 47
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
+ A +VF+ +PER++VSW+ +I V+ G+ ++A+ IF EM+ GS +E T+ SV+C
Sbjct: 48 LIRRACKVFDEIPERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVC 107
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
ACA G + R + + I + + + T+LID+YAKCG+I++A VF G+ + ++DV
Sbjct: 108 ACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPE-RNDV 166
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
W++++ G + +E L LF + +G+ ++ ++ ACA ++E
Sbjct: 167 -TWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAI 225
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+ + G P + + +VD ++ G + EAY C + + + ++++G H
Sbjct: 226 VCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIE-KKNVVLWNAIISGFAKHA 280
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
L S+L CA G+ +I GL L++MY+KCG I+ A VF E
Sbjct: 1 LHSLLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFD--E 58
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
+ ++ WN MIG +G ++++++F EMQ G E T ++ ACA G V
Sbjct: 59 IPERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDV 115
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 153/429 (35%), Positives = 242/429 (56%), Gaps = 34/429 (7%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+D++ + + + I +N + RGY++S +P + SLF ++L +G+ PD T+ L KA
Sbjct: 80 MDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKA 139
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+ +H K G +++I +LI+MY
Sbjct: 140 CASSKALREGMGLHCFAVKLGLNHNIYICPTLINMY------------------------ 175
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
A+C +MN AR VF+ M + +VS++A+I GY + EAL +F E++ +
Sbjct: 176 -------AECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIE 228
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+VT++SV+ +CA LGALD G+ + Y+ KG + + T+LIDM+AKCG++ +A+ +
Sbjct: 229 PTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISI 288
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F G+ D W+AMI A HG +++ +F EM+ G+ PDEITFLGLL AC+H G
Sbjct: 289 FEGMRVR--DTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAG 346
Query: 313 LVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
LV + +F S+ K G+ P +HY CMVD L RAG + EAY F+ ++ ++ T + +L
Sbjct: 347 LVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTL 406
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
L+ C HG +++A+ V +++ EL H G YV LSN+YA RW++ R+ M+ RGV
Sbjct: 407 LSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVV 466
Query: 432 KYPGWSFVE 440
K PG S VE
Sbjct: 467 KVPGCSSVE 475
>gi|414873430|tpg|DAA51987.1| TPA: hypothetical protein ZEAMMB73_709752 [Zea mays]
Length = 536
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 160/451 (35%), Positives = 240/451 (53%), Gaps = 17/451 (3%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD- 62
SA + LG ++ + + +P + + R ++ S +++++F M+ GV PD
Sbjct: 54 LSAYAALGRPRHARDLFDEMPDPGLVSRTAMARAHAASGQAAQALAVFRDMIADGVLPDN 113
Query: 63 ----------HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG 112
H T A+G A R VHA I +G D+F+S LI +YG G
Sbjct: 114 VALAVALAACHTTASL--PAAGMAAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGEYG 171
Query: 113 DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVK 172
++ +R +FD MP + +VSWN+M+ Y + + A ++F MP R+VVSW+ +I GY
Sbjct: 172 ELALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYSL 231
Query: 173 CGDYKEALVIFEEMRDVGS---KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229
G + EAL + +M S N T+ +VL ACA G L+ G + ++ ++
Sbjct: 232 VGRFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRNRMNDD 291
Query: 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
L SLIDMY KCG+I++AL VF + + D+ W MI GLAMHG ++L++F M
Sbjct: 292 GSLDRSLIDMYVKCGSIEKALQVFEKAPEAR-DLYSWTTMICGLAMHGRAADALKMFGMM 350
Query: 290 QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQV 349
Q GI PD++T +G+L+ACAH GLV E F SL K + PK EHY C++D L R G++
Sbjct: 351 QDNGIHPDDVTLVGVLNACAHCGLVDEGLRHFYSLEKYAITPKIEHYGCVIDLLGRVGRL 410
Query: 350 TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409
EAY I M ++P A + G+ L C H ++L EI +L L P V LS++Y
Sbjct: 411 QEAYNIIRTMRMKPNAVIWGAFLNACKVHSNVELGEIAAAELTRLDPGDPWAKVMLSSLY 470
Query: 410 AIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
A + W+ R M +KK PG S +E
Sbjct: 471 AKLQDWNSLARERREMNNLQIKKTPGCSSIE 501
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 115/289 (39%), Gaps = 41/289 (14%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
++L YA G AR +F+ MP+ +VS +A+ + G +AL +F +M G
Sbjct: 51 TALLSAYAALGRPRHARDLFDEMPDPGLVSRTAMARAHAASGQAAQALAVFRDMIADGVL 110
Query: 193 ANEVTLVSVLCACAHLGALD---------QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
+ V L L AC +L G+M+ ++ G+ + + T LI +Y +
Sbjct: 111 PDNVALAVALAACHTTASLPAAGMAAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGEY 170
Query: 244 GAIKEALIVF---------------HGVEKHQS--------------DVLIWNAMIGGLA 274
G + + +F H +H + DV+ WN MI G +
Sbjct: 171 GELALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYS 230
Query: 275 MHGFVKESLELFTEM---QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
+ G E+LEL +M + P+ T +L+ACA G + + + + M
Sbjct: 231 LVGRFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRNRMND 290
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
++D + G + +A + + P +++ G HG+
Sbjct: 291 DGSLDRSLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGR 339
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 158/451 (35%), Positives = 243/451 (53%), Gaps = 40/451 (8%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ ++N +IR Y + + ++ +F M+ G SPDH TYP + KA + + +H
Sbjct: 98 VIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHG 157
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK------ 141
+ K G + +LF+ N LI +YG CG + AR V D M +K VSWNSM+ GYA+
Sbjct: 158 AVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDD 217
Query: 142 ----CGEMNMARQ---------------------------VFELMPERNVVSWSALIDGY 170
C EM+ RQ +F + ++++VSW+ +I Y
Sbjct: 218 ALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVY 277
Query: 171 VKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTL 230
+K +++ ++ +M + + +T SVL AC L AL GR + Y+ K L +
Sbjct: 278 MKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNM 337
Query: 231 PLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ 290
L+ SLIDMYA+CG +++A VF ++ DV W ++I M G ++ LFTEMQ
Sbjct: 338 LLENSLIDMYARCGCLEDAKRVFDRMKFR--DVASWTSLISAYGMTGQGYNAVALFTEMQ 395
Query: 291 IVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQV 349
G +PD I F+ +LSAC+H GL+ E ++FK + + P EH+AC+VD L R+G+V
Sbjct: 396 NSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRV 455
Query: 350 TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409
EAY I QMP++P + G+LL+ C + +D+ + KL++L P+ G YV LSN+Y
Sbjct: 456 DEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIY 515
Query: 410 AIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
A RW E R M+ R ++K PG S VE
Sbjct: 516 AKAGRWTEVTAIRSLMKRRRIRKMPGISNVE 546
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 135/296 (45%), Gaps = 35/296 (11%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
N+ Y ++ +L + WN +I Y K+ P KS+ L+++M + V PD +T + +
Sbjct: 251 NVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLR 310
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A G L+ L +H + + ++ + NSLI MY CG + A+ VFD M + S
Sbjct: 311 ACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVAS 370
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
W S++ Y G+ GY A+ +F EM++ G
Sbjct: 371 WTSLISAYGMTGQ------------------------GY-------NAVALFTEMQNSGQ 399
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ + V++L AC+H G L++G+ + M D ++ + L+D+ + G + EA
Sbjct: 400 SPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAY 459
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ + ++ +W A++ ++ + + + +++ + P+E + LLS
Sbjct: 460 NIIKQMPMKPNE-RVWGALLSSCRVYSNM--DIGILAADKLLQLAPEESGYYVLLS 512
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 127/264 (48%), Gaps = 15/264 (5%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ YA GE +AR VF+++PERNV+ ++ +I Y+ Y +AL++F +M G +
Sbjct: 73 LMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPD 132
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
T VL AC+ L G + + GL L L + LI +Y KCG + EA V
Sbjct: 133 HYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLD 192
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL- 313
E DV+ WN+M+ G A + ++L++ EM V PD T LL A +
Sbjct: 193 --EMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSE 250
Query: 314 -VMEAWYFFKSLGKRGMVPKSEHYACMVDAL---SRAGQVTEAYEFICQMPLEPTASMLG 369
V+ F +L K+ +V + M+ S G+ + Y + + +EP A
Sbjct: 251 NVLYVEEMFMNLEKKSLV----SWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCA 306
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVE 393
S+L C G L A ++G+++ E
Sbjct: 307 SVLRAC---GDLS-ALLLGRRIHE 326
>gi|449434194|ref|XP_004134881.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 436
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 153/414 (36%), Positives = 241/414 (58%), Gaps = 11/414 (2%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W IR + + +K+++ + +M R V D + F+ KA + +HA I
Sbjct: 27 WALRIR---NAPSLHKALAFYSQMHRQSVPHDSFSILFMLKACASSNNLSILHHLHAHIT 83
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G+ + +F++ SL+H Y AR VFD MP K SV+WN+M+ GY+K G+++ ARQ
Sbjct: 84 KLGFTTHVFVATSLLHSY-VLHSFQLARLVFDEMPHKNSVTWNTMISGYSKAGDVHTARQ 142
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F+ MP R++ SWSA+I Y+ +Y+ AL++F++M G +++ S+L CAH+G+
Sbjct: 143 LFDRMPSRDLASWSAMIAAYINNRNYRGALLLFQDMIINGINPDQMAAGSILNGCAHMGS 202
Query: 211 LD--QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
L G+ + +++ L L L T L+DMYAKCG +K A +F+ + + +V W A
Sbjct: 203 LGLLAGKSVHGFVVKNRWELNLELGTVLVDMYAKCGFLKYACQIFNLMS--ERNVRTWTA 260
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328
+I GLA HG KE+L LF M+ G+ P+E TF G+LSAC H GLV E +F + + G
Sbjct: 261 LICGLAHHGCCKEALVLFETMRHEGVEPNEFTFTGVLSACVHAGLVQEGRKYFNMIEECG 320
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
+ + +HY C VD L R+G + EAY I M LEP + SLL+ C H DLAE V
Sbjct: 321 LEIRIQHYGCFVDLLGRSGLLEEAYGVIKSMRLEPNVIVWSSLLSACKQHKSFDLAERVI 380
Query: 389 KKLVE-LQPD-HDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++++E ++PD H G Y +S++Y + +WD+A R + + V+K +S +
Sbjct: 381 EQILEKIEPDNHAGVYSLVSDLYVLQDKWDDAENIRNLL-NQHVRKGRAYSLIR 433
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 132/296 (44%), Gaps = 35/296 (11%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S S G++ + ++ + + + W+ +I Y ++N ++ LF M+ G++PD +
Sbjct: 129 SGYSKAGDVHTARQLFDRMPSRDLASWSAMIAAYINNRNYRGALLLFQDMIINGINPDQM 188
Query: 65 TYPFLAKASGRLAKRELAV--AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
+ + L +VH + K +E +L + L+ MY CG + YA ++F+
Sbjct: 189 AAGSILNGCAHMGSLGLLAGKSVHGFVVKNRWELNLELGTVLVDMYAKCGFLKYACQIFN 248
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
LM ERNV +W+ALI G G KEALV+
Sbjct: 249 -------------------------------LMSERNVRTWTALICGLAHHGCCKEALVL 277
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
FE MR G + NE T VL AC H G + +GR + + GL + + +D+ +
Sbjct: 278 FETMRHEGVEPNEFTFTGVLSACVHAGLVQEGRKYFNMIEECGLEIRIQHYGCFVDLLGR 337
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
G ++EA V + + + +V++W++++ H + E E + I PD
Sbjct: 338 SGLLEEAYGVIKSM-RLEPNVIVWSSLLSACKQHKSFDLA-ERVIEQILEKIEPDN 391
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 77/185 (41%), Gaps = 10/185 (5%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + Y+C++ + +S + W +I G + +++ LF M GV P+ T+ +
Sbjct: 238 GFLKYACQIFNLMSERNVRTWTALICGLAHHGCCKEALVLFETMRHEGVEPNEFTFTGVL 297
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + I + G E + + + G G + A V M + +V
Sbjct: 298 SACVHAGLVQEGRKYFNMIEECGLEIRIQHYGCFVDLLGRSGLLEEAYGVIKSMRLEPNV 357
Query: 131 -SWNSMLDGYAKCGEMNMARQVFE-----LMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
W+S+L + ++A +V E + P+ + +S + D YV + +A E
Sbjct: 358 IVWSSLLSACKQHKSFDLAERVIEQILEKIEPDNHAGVYSLVSDLYVLQDKWDDA----E 413
Query: 185 EMRDV 189
+R++
Sbjct: 414 NIRNL 418
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 154/426 (36%), Positives = 244/426 (57%), Gaps = 7/426 (1%)
Query: 20 LSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKR 79
L+ ++ W + I +++ ++ F M AGV P+H+T+ + G
Sbjct: 28 LNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDFPSG 87
Query: 80 ELAVA--VHAQIAKTGYESD-LFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
A+ +H K G + + + + ++I MY G + AR VFD M K SV+WN+M+
Sbjct: 88 SEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMI 147
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
DGY + G+++ A ++F+ MPER+++SW+A+I+G+V G ++EAL F EM+ G K + V
Sbjct: 148 DGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYV 207
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
+++ L AC +LGAL G + RY++ + + + SLID+Y +CG ++ A VF +
Sbjct: 208 AIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKM 267
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
EK V+ WN++I G A +G ESL F +MQ PD +TF G L+AC+H GLV E
Sbjct: 268 EKRT--VVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEE 325
Query: 317 AWYFFK-SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
+F+ + + P+ EHY C+VD SRAG++ +A + + MP++P ++GSLL C
Sbjct: 326 GLRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAAC 385
Query: 376 MNHGKLD-LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
NHG LAE + K L +L YV LSN+YA +W+ A R M+ G+KK P
Sbjct: 386 RNHGNNTVLAEKLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQP 445
Query: 435 GWSFVE 440
G+S +E
Sbjct: 446 GFSSIE 451
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 129/302 (42%), Gaps = 64/302 (21%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR----------- 56
S G + + V ++ + WNT+I GY +S + + +F KM
Sbjct: 120 SKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMIN 179
Query: 57 --------------------AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYES 96
+GV PD++ A L + VH + +++
Sbjct: 180 GFVNKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKN 239
Query: 97 DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP 156
++ +SNSLI +Y CG + +AR+VFD M + VSWNS++ G+A
Sbjct: 240 NVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFA---------------- 283
Query: 157 ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRM 216
G+ E+LV F +M++ K + VT L AC+H+G +++G
Sbjct: 284 ---------------ANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGLR 328
Query: 217 MLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAM 275
+ MI D +S + L+D+Y++ G +++AL + + ++V+I +++
Sbjct: 329 YFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVI-GSLLAACRN 387
Query: 276 HG 277
HG
Sbjct: 388 HG 389
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 243/434 (55%), Gaps = 14/434 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYPFL 69
GN+ S KV ++ WN +I GY + + ++ LF KM +R V+ + F
Sbjct: 14 GNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGF- 72
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A++ R V +++ ++ ++ Y ++ AREVF+GMP +
Sbjct: 73 ARSGDTETARRFFDDVPSEL------RNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNF 126
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+W+SM+ GY K G + AR +F+ +P RN+V+W++LI GY + G +EAL F +M+
Sbjct: 127 FAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAE 186
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G + +EVT+ SVL AC+ LG LD G+ + M KG+ L + L+DMYAKCG + A
Sbjct: 187 GFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANA 246
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
++F G+ + WN+MI G A+HG KE+LE F M+ PDEITFL +LSACA
Sbjct: 247 RLIFEGMA--HRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACA 304
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
HGG V F + K G+ +HY C++D L RAG++ EAY+ I +MP++P + G
Sbjct: 305 HGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWG 364
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPD----HDGRYVGLSNVYAIFKRWDEARTTREAM 425
+LL C H +++A+ V +++V++ + D YV LSN+YA RW++A R M
Sbjct: 365 ALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEM 424
Query: 426 ETRGVKKYPGWSFV 439
+G +K G S +
Sbjct: 425 ANKGFQKTSGCSSI 438
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 159/443 (35%), Positives = 242/443 (54%), Gaps = 46/443 (10%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S LG++DY+ KV I+ WN + R + + + + + L+ KM R GV D TY
Sbjct: 123 SDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYT 182
Query: 68 FLAKA-------SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
++ KA + L K +HA + + GY S ++I +L+ MY
Sbjct: 183 YVLKACVASECTADHLTK---GKEIHAHLTRRGYNSHVYIMTTLVDMY------------ 227
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
A+ G ++ A VF MP RNVVSWSA+I Y K G EAL
Sbjct: 228 -------------------ARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEAL 268
Query: 181 VIFEEM--RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
F EM S N VT+VSVL ACA L AL+QGR++ Y++ +GL LP+ ++L+
Sbjct: 269 RTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVT 328
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MY +CG + VF + H DV+ WN++I +HG+ ++++++F EM G +P
Sbjct: 329 MYGRCGKLDVGQRVFDRM--HDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTP 386
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
+TF+ +L AC+H GLV E F+S+ + G+ P+ EHYACMVD L RA ++ EA + +
Sbjct: 387 VTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQ 446
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
M EP + GSLL C HG ++LAE ++L L+P + G YV L+++YA + WDE
Sbjct: 447 DMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDE 506
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
+ ++ +E RG++K PG ++E
Sbjct: 507 VKRVKKLLEHRGLQKLPGRCWME 529
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 131/304 (43%), Gaps = 39/304 (12%)
Query: 52 VKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSC 111
+++L SP TY L G + + VH I G + D F++ LI MY
Sbjct: 66 LRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDL 125
Query: 112 GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV 171
G + YA R+VF+ +R + W+AL
Sbjct: 126 GSVDYA-------------------------------RKVFDKTRKRTIYVWNALFRALT 154
Query: 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA----HLGALDQGRMMLRYMIDKGLS 227
G +E L ++ +M +G +++ T VL AC L +G+ + ++ +G +
Sbjct: 155 LAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYN 214
Query: 228 LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFT 287
+ + T+L+DMYA+ G + A VF+G+ +V+ W+AMI A +G E+L F
Sbjct: 215 SHVYIMTTLVDMYARFGCVDYASYVFNGMPVR--NVVSWSAMIACYAKNGKAFEALRTFR 272
Query: 288 EM--QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSR 345
EM + +P+ +T + +L ACA + + + +RG+ + +V R
Sbjct: 273 EMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGR 332
Query: 346 AGQV 349
G++
Sbjct: 333 CGKL 336
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 89/210 (42%), Gaps = 10/210 (4%)
Query: 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY 220
+S + LI K G K+AL + + + E+ +LC C H +L G + R+
Sbjct: 47 ISNNQLIQSLCKEGKLKQALRVLSQESSPSQQTYELL---ILC-CGHRSSLSDGLRVHRH 102
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
++D G L T LI MY+ G++ A VF K + +WNA+ L + G +
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRT--IYVWNALFRALTLAGHGE 160
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS----LGKRGMVPKSEHY 336
E L L+ +M +G+ D T+ +L AC + K L +RG
Sbjct: 161 EVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIM 220
Query: 337 ACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
+VD +R G V A MP+ S
Sbjct: 221 TTLVDMYARFGCVDYASYVFNGMPVRNVVS 250
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 152/432 (35%), Positives = 251/432 (58%), Gaps = 9/432 (2%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I+++ +V + +N++I GY KS + + LF M + +++ +
Sbjct: 174 GDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLE--DKNLISWNSML 231
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
G A+ + + + ++ + E DL N++I + CG I +A +F+ MP + +
Sbjct: 232 ---GGFAQTKDGIGLALELFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVI 288
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDV 189
SW++M+DGYAK G++ +AR +F+ MP+++VV+++ ++ GY + G Y EAL IF EM R
Sbjct: 289 SWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQS 348
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+E TLV L A + LG +++ M Y ++ G+S+T + +LIDMY+KCG+I+ A
Sbjct: 349 NLSPDETTLVVALSAISQLGHVEKAASMHNYFLENGISVTGKVAVALIDMYSKCGSIENA 408
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+++F GV+ Q + WNAMI G+A +G K + + EM + + PD ITF+G+L+ACA
Sbjct: 409 ILIFDGVD--QKGIDHWNAMISGMARNGLGKLAFGMLLEMHRLSVKPDGITFIGVLNACA 466
Query: 310 HGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E F+ + K + PK +HY CMVD L +AG V A +FI +MP+EP +
Sbjct: 467 HAGLVKEGLICFELMRKVHKLEPKLQHYGCMVDILGKAGLVEGALKFIEEMPIEPNDIIW 526
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+LL+ C NH + E++ K L+ + + YV LSN+YA W A R M+ +
Sbjct: 527 RTLLSACQNHENFTIGELIAKHLMTMDSCNSSSYVLLSNIYARLGLWSAASKVRMMMKKQ 586
Query: 429 GVKKYPGWSFVE 440
+ K PG S++E
Sbjct: 587 NLTKVPGCSWIE 598
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 200/378 (52%), Gaps = 23/378 (6%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
F WN VI+ YS P +++ LF ML G D ++ + KA R+ E +H
Sbjct: 91 FLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEEGKQIHGL 150
Query: 89 IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
+ K S+LF+ N LI MY CGDI +AR+VFD MP + SVS+NSM+DGY K G +++A
Sbjct: 151 LMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLA 210
Query: 149 RQVFELMP--ERNVVSWSALIDGYVKCGD-YKEALVIFEEM--RDVGSKANEVTLVSVLC 203
R++F+ MP ++N++SW++++ G+ + D AL +FE+M RD+ V+ +++
Sbjct: 211 RELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPERDL------VSWNTIIG 264
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
A G ++ + M + + +++ID YAK G IK A +F E DV
Sbjct: 265 GFAKCGRIEFAHSLFNRMPKR----DVISWSNMIDGYAKLGDIKVARTLFD--EMPDKDV 318
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQ-IVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
+ +N ++ G A +G+ E+LE+F EMQ ++PDE T + LSA + G V +A
Sbjct: 319 VAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHN 378
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEA---YEFICQMPLEPTASMLGSLLTGCMNHG 379
+ G+ + ++D S+ G + A ++ + Q ++ +M+ + + G
Sbjct: 379 YFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGL--G 436
Query: 380 KLDLAEIVGKKLVELQPD 397
KL ++ + ++PD
Sbjct: 437 KLAFGMLLEMHRLSVKPD 454
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 116/270 (42%), Gaps = 36/270 (13%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPF 68
LG+I + + + + + +NT++ GY+++ +++ +F +M R + +SPD T
Sbjct: 300 LGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVV 359
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A +L E A ++H + G ++ +LI MY CG I A +FDG+ K
Sbjct: 360 ALSAISQLGHVEKAASMHNYFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKG 419
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
WN+M+ G MAR G K A + EM
Sbjct: 420 IDHWNAMISG--------MARN-----------------------GLGKLAFGMLLEMHR 448
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT--SLIDMYAKCGAI 246
+ K + +T + VL ACAH G + +G + M K L LQ ++D+ K G +
Sbjct: 449 LSVKPDGITFIGVLNACAHAGLVKEGLICFELM-RKVHKLEPKLQHYGCMVDILGKAGLV 507
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ AL + +D+ IW ++ H
Sbjct: 508 EGALKFIEEMPIEPNDI-IWRTLLSACQNH 536
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 137/322 (42%), Gaps = 44/322 (13%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGD---IVYAREVFDGMPTKMSVSWNSMLDGYAK 141
VHA+I KTGY + ++ +I S + +AR VF + +
Sbjct: 33 VHARIIKTGYLKNSSLTTKIILNSISSPHKPLVEFARYVF-----------------FTR 75
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
+ R + P W+A+I Y + ALV+F M + G ++ + +
Sbjct: 76 YAVQRIRRNHLDDDP----FLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLI 131
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
L ACA + +++G+ + ++ + L L LI MY +CG I+ A VF +
Sbjct: 132 LKACARVCLVEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQ-- 189
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG----GLVMEA 317
D + +N+MI G G + + ELF M + + I++ +L A GL +E
Sbjct: 190 DSVSYNSMIDGYVKSGTIDLARELFDSMPLE--DKNLISWNSMLGGFAQTKDGIGLALE- 246
Query: 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
F+ + +R +V + ++ ++ G++ A+ +MP S +++ G
Sbjct: 247 --LFEKMPERDLVS----WNTIIGGFAKCGRIEFAHSLFNRMPKRDVISW-SNMIDGYAK 299
Query: 378 HGKLDLAEIVGKKLVELQPDHD 399
G + +A + L + PD D
Sbjct: 300 LGDIKVA----RTLFDEMPDKD 317
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 5/155 (3%)
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
D +WNA+I + +L LF M G D+ +F +L ACA LV E
Sbjct: 87 DDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEEGKQ 146
Query: 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
L K + C++ R G + A + +MP++ + S S++ G + G
Sbjct: 147 IHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVS-YNSMIDGYVKSG 205
Query: 380 KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414
+DLA ++L + P D + +++ F +
Sbjct: 206 TIDLA----RELFDSMPLEDKNLISWNSMLGGFAQ 236
>gi|357469567|ref|XP_003605068.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506123|gb|AES87265.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 494
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 149/419 (35%), Positives = 243/419 (57%), Gaps = 7/419 (1%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRA---GVSPDHLTYPFLAKASGRLAKRELAVA 84
+ +N +IR YS S P++S+ F L +S D T FLA A L
Sbjct: 76 LLLFNNLIRSYSLSLFPHESLKFFTHTLNNLTHSLSLDSFTLTFLAHACANLDTTHFGFH 135
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+H + K G+E+ +F+ L+HMY + G +V A +VF MP + +V+WN + G K G+
Sbjct: 136 LHCIVCKMGFENHVFVQTGLLHMYSNWGFLVDAAQVFGEMPDRNTVTWNVFISGLIKWGQ 195
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV-GSKANEVTLVSVLC 203
+ AR VF+ M R+VVSW+ +IDGY + +AL +F +M +V G + NEVTL++V
Sbjct: 196 LEFARSVFDRMVVRSVVSWTLVIDGYTRMNKPLKALALFRKMIEVDGIEPNEVTLLTVFP 255
Query: 204 ACAHLGALDQGRMMLRYMIDKGL-SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
A AHLG + + Y+ +G ++ + + +LID+YAKCG I+ A +F + + +
Sbjct: 256 AIAHLGNVKMCESVHGYVEKRGFNAVDIRIVNALIDLYAKCGCIESASGLFSEMPDWRRN 315
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF- 321
+ WN+++ G A G V+E+++ F +M+ G+ P+ + FL +LSAC+H GLV E FF
Sbjct: 316 SVSWNSVMSGYATFGMVREAVDTFEKMEKAGVRPNHVAFLSILSACSHSGLVEEGLEFFG 375
Query: 322 KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML-GSLLTGCMNHGK 380
K + G+VP +HY C++D L RAG++ EA + ++P E ++ +LL C H
Sbjct: 376 KMVNDYGLVPDIKHYGCVIDMLGRAGRLGEAEKVALEVPHEAANDVIWRTLLGACSVHDN 435
Query: 381 LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
+++ + V KK++E++ H G YV +SN++A R+ + RE ++ R V K PG+S V
Sbjct: 436 VEIGKRVTKKILEMEKGHGGDYVLMSNIFASVGRFKDVERLREMIDKRNVFKLPGYSIV 494
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 132/281 (46%), Gaps = 36/281 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPDH 63
S L G ++++ V + + W VI GY++ P K+++LF KM+ G+ P+
Sbjct: 188 SGLIKWGQLEFARSVFDRMVVRSVVSWTLVIDGYTRMNKPLKALALFRKMIEVDGIEPNE 247
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYES-DLFISNSLIHMYGSCGDIVYAREVFD 122
+T + A L ++ +VH + K G+ + D+ I N+LI +Y CG I A +F
Sbjct: 248 VTLLTVFPAIAHLGNVKMCESVHGYVEKRGFNAVDIRIVNALIDLYAKCGCIESASGLFS 307
Query: 123 GMPT--KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
MP + SVSWNS++ GYA G + +EA+
Sbjct: 308 EMPDWRRNSVSWNSVMSGYATFGMV-------------------------------REAV 336
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDM 239
FE+M G + N V +S+L AC+H G +++G M+ D GL + +IDM
Sbjct: 337 DTFEKMEKAGVRPNHVAFLSILSACSHSGLVEEGLEFFGKMVNDYGLVPDIKHYGCVIDM 396
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+ G + EA V V ++ +IW ++G ++H V+
Sbjct: 397 LGRAGRLGEAEKVALEVPHEAANDVIWRTLLGACSVHDNVE 437
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 159/433 (36%), Positives = 237/433 (54%), Gaps = 36/433 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I + K+ + + WN +I GY+++ N +++ LF +M++ V PD T +
Sbjct: 183 GYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVV 242
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + A EL VH+ I G+ S+L I N+LI
Sbjct: 243 SACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI------------------------- 277
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
D Y KCGE+ A +FE + ++V+SW+ LI GY YKEAL++F+EM G
Sbjct: 278 ------DLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 331
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMID--KGLSLTLPLQTSLIDMYAKCGAIKE 248
N+VT++S+L ACAHLGA++ GR + Y+ KG++ +TSLIDMYAKCG I+
Sbjct: 332 ESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEA 391
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A VF + + WNAMI G AMHG + ++F+ M+ I PD+ITF+GLLSAC
Sbjct: 392 AQQVFDSILNRS--LSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSAC 449
Query: 309 AHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
+H G++ + F+S+ + + PK EHY CM+D L +G EA E I M +EP +
Sbjct: 450 SHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVI 509
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
SLL C + ++L E + L++++P + G YV LSN+YA RW+E R +
Sbjct: 510 WCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLND 569
Query: 428 RGVKKYPGWSFVE 440
+G+KK PG S +E
Sbjct: 570 KGMKKVPGCSSIE 582
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 134/410 (32%), Positives = 228/410 (55%), Gaps = 9/410 (2%)
Query: 1 MLSFSALS-YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
++ F LS + + Y+ V + P + WNT+ RG++ S +P ++ L+V M+ G+
Sbjct: 40 LIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGL 99
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T+PFL K+ + +H + K GY+ DL++ SLI MY G + AR+
Sbjct: 100 LPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARK 159
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD + VS+ +++ GYA G + A+++F+ +P ++VVSW+A+I GY + G+ KEA
Sbjct: 160 VFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEA 219
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F+EM + +E T+VSV+ ACA +++ GR + ++ D G L + +LID+
Sbjct: 220 LELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDL 279
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y KCG ++ A +F G+ DV+ WN +IGG KE+L LF EM G +P+++
Sbjct: 280 YIKCGEVETACGLFEGLS--YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDV 337
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
T L +L ACAH G + + + KR G+ S H ++D ++ G + EA + +
Sbjct: 338 TMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDI-EAAQQVF 396
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV--ELQPDHDGRYVGL 405
L + S +++ G HG+ + A + ++ E++PD D +VGL
Sbjct: 397 DSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPD-DITFVGL 445
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 119/297 (40%), Gaps = 57/297 (19%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+HAQ+ KTG + + + LI + FDG+P +S
Sbjct: 21 IHAQMIKTGLHNTNYALSKLI-------EFCVLSPHFDGLPYAIS--------------- 58
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
VFE + E N++ W+ + G+ D AL ++ M +G N T +L +
Sbjct: 59 ------VFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 112
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ---- 260
CA A +G+ + +++ G L L + TSLI MY + G +++A VF
Sbjct: 113 CAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSY 172
Query: 261 -------------------------SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
DV+ WNAMI G A G KE+LELF EM +
Sbjct: 173 TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR 232
Query: 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352
PDE T + ++SACA + + G + ++D + G+V A
Sbjct: 233 PDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 289
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 243/434 (55%), Gaps = 14/434 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYPFL 69
GN+ S KV ++ WN +I GY + + ++ LF KM +R V+ + F
Sbjct: 143 GNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGF- 201
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A++ R V +++ ++ ++ Y ++ AREVF+GMP +
Sbjct: 202 ARSGDTETARRFFDDVPSEL------RNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNF 255
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+W+SM+ GY K G + AR +F+ +P RN+V+W++LI GY + G +EAL F +M+
Sbjct: 256 FAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAE 315
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G + +EVT+ SVL AC+ LG LD G+ + M KG+ L + L+DMYAKCG + A
Sbjct: 316 GFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANA 375
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
++F G+ + WN+MI G A+HG KE+LE F M+ PDEITFL +LSACA
Sbjct: 376 RLIFEGMA--HRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACA 433
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
HGG V F + K G+ +HY C++D L RAG++ EAY+ I +MP++P + G
Sbjct: 434 HGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWG 493
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPD----HDGRYVGLSNVYAIFKRWDEARTTREAM 425
+LL C H +++A+ V +++V++ + D YV LSN+YA RW++A R M
Sbjct: 494 ALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEM 553
Query: 426 ETRGVKKYPGWSFV 439
+G +K G S +
Sbjct: 554 ANKGFQKTSGCSSI 567
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 52/464 (11%)
Query: 21 SHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL----AKASGRL 76
S LS P ++ I + S P S+++F ++ R + +P L A+A G
Sbjct: 74 SALSPP---LYSPAISALASSPCPAASLAVFNRVSRLSLPTPLPAFPALLKSCARAFGLC 130
Query: 77 AKRE--------LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A + + +H ++ K G D ++ N+L+ MYG G + AR+VFDGMP +
Sbjct: 131 AAADGGGEGFVSKGMELHGRVLKLGCGGDRYVQNALVSMYGKLGRLGDARKVFDGMPARN 190
Query: 129 SVSWNSMLDGY-------------------------------AKCGEMNMARQVFELMPE 157
+VSWN+++ + A+ G+M A +VF MP
Sbjct: 191 AVSWNALVAAHGATGDLHGVELLSREMPERSVSWWNAEITRHARVGDMEAAARVFREMPG 250
Query: 158 RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMM 217
R+ VSW++LI GY K G Y +AL +F EM+D G + E+TLVSVL ACA +G L+ G+ +
Sbjct: 251 RDAVSWNSLIGGYTKLGRYVQALEVFREMQDSGVEPTELTLVSVLGACAEIGELELGKGV 310
Query: 218 LRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
Y+ KG+ + +L+DMYAKCG+++ A +F + D+ WNAMI G ++HG
Sbjct: 311 HGYIGSKGVVADGYVGNALVDMYAKCGSLELARQLFESMSTR--DITCWNAMIVGFSVHG 368
Query: 278 FVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHY 336
+ +++LELF M+ + PD +TFLG+L AC+HGGLV E +F+S+ + +VP +HY
Sbjct: 369 YSRKALELFDAMR---VEPDHVTFLGVLIACSHGGLVDEGRVYFRSMTEDYKIVPGVKHY 425
Query: 337 ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQP 396
CMVD L R G+V EAY+ I MP++ + +L C HG +DLA +L +L P
Sbjct: 426 GCMVDMLCRCGKVAEAYQMINHMPVKANCVLWKMVLAACRVHGHIDLANKAFHELHQLMP 485
Query: 397 DHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
DG + +SNVYA KRWD R + GV K+ S V+
Sbjct: 486 IDDGDVITVSNVYAEAKRWDVVEHLRTKVIEPGVWKHAAHSQVD 529
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 136/282 (48%), Gaps = 36/282 (12%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G+++ + +V + WN++I GY+K +++ +F +M +GV P LT +
Sbjct: 235 VGDMEAAARVFREMPGRDAVSWNSLIGGYTKLGRYVQALEVFREMQDSGVEPTELTLVSV 294
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A + + EL VH I G +D ++ N+L+ MY CG + AR++F+ M T+
Sbjct: 295 LGACAEIGELELGKGVHGYIGSKGVVADGYVGNALVDMYAKCGSLELARQLFESMSTRDI 354
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
WN+M+ G++ + GY ++AL +F+ MR
Sbjct: 355 TCWNAMIVGFS--------------------------VHGY-----SRKALELFDAMR-- 381
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKE 248
+ + VT + VL AC+H G +D+GR+ R M D + + ++DM +CG + E
Sbjct: 382 -VEPDHVTFLGVLIACSHGGLVDEGRVYFRSMTEDYKIVPGVKHYGCMVDMLCRCGKVAE 440
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ 290
A + + + +++ ++W ++ +HG + + + F E+
Sbjct: 441 AYQMINHMPV-KANCVLWKMVLAACRVHGHIDLANKAFHELH 481
>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Vitis vinifera]
Length = 545
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 156/470 (33%), Positives = 256/470 (54%), Gaps = 42/470 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + + K+ + N I W + ++ +++S F +M + G+ P+ P +
Sbjct: 76 GQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSIL 135
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD-------- 122
KA G L+ R +H I K +ESD +I ++LI+MY CG + A VFD
Sbjct: 136 KACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLV 195
Query: 123 -------------------GMPTKMS--------VSWNSMLDGYAKCGEMNMARQVFELM 155
+ KM VSWN+++ G+++ G+ +M +VF LM
Sbjct: 196 VMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLM 255
Query: 156 P----ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGAL 211
E +VVSW+++I G+V+ E F+EM D G + VT+ S+L AC ++ L
Sbjct: 256 TANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANL 315
Query: 212 DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIG 271
G+ + Y + G+ + ++++L+DMYAKCG I EA I+F+ + + + + WN++I
Sbjct: 316 RHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMP--ERNTVTWNSLIF 373
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV- 330
G A HG+ E++ELF +M+ D +TF +L+AC+H G+V F+ + ++ +
Sbjct: 374 GYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIE 433
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKK 390
P+ EHYACMVD L RAG+++EAY+ I MP+EP + G+LL C NHG ++LAE+ +
Sbjct: 434 PRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEH 493
Query: 391 LVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L EL+P+ G + LSN+YA RW A ++ M+ R K+PG S++E
Sbjct: 494 LFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 543
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ Y +CG+++ AR++F+ +P N+ W L + G Y+EAL F EM+ G + N
Sbjct: 68 LMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPN 127
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
+ L S+L AC HL G M ++ + ++LI MY+KCG +++A VF
Sbjct: 128 QFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFD 187
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
+ D+++ NAM+ G A HGFV E+L L +MQ G+ P+ +++ L++ + G
Sbjct: 188 WIV--DKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDK 245
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE---PTASMLGSL 371
F+ + G+ P + ++ + E ++ +M + P++ + SL
Sbjct: 246 SMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSL 305
Query: 372 LTGCMN-----HGKLDLAEIVGKKLV 392
L C N HGK EI G +V
Sbjct: 306 LPACTNVANLRHGK----EIHGYAMV 327
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 154/321 (47%), Gaps = 47/321 (14%)
Query: 5 SALSYL----GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
SAL Y+ G+++ +C+V + + + N ++ GY++ +++++L KM +AGV
Sbjct: 167 SALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVK 226
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDL---------FISN--------- 102
P+ +++ L ++ + + V + G E D+ F+ N
Sbjct: 227 PNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDA 286
Query: 103 -----------------SLIHMYGSCGDIVYAREVFD-----GMPTKMSVSWNSMLDGYA 140
SL+ + ++ + +E+ G+ + V ++++D YA
Sbjct: 287 FKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVR-SALVDMYA 345
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
KCG ++ A+ +F +MPERN V+W++LI GY G EA+ +F +M + +K + +T +
Sbjct: 346 KCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTA 405
Query: 201 VLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
VL AC+H G ++ G + R M +K + L ++D+ + G + EA + +
Sbjct: 406 VLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPV- 464
Query: 260 QSDVLIWNAMIGGLAMHGFVK 280
+ D +W A++G HG ++
Sbjct: 465 EPDKFVWGALLGACRNHGNIE 485
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
AL +GR + +++ GL+ L+ Y +CG + A +F + +++ W +
Sbjct: 42 ALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIP--NTNIRRWIVL 99
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
G A GF +E+L F+EMQ G+ P++ +L AC H
Sbjct: 100 TGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGH 140
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 153/430 (35%), Positives = 234/430 (54%), Gaps = 33/430 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + ++ + + W +I G+S++ P ++ LF +MLR G P+H T L
Sbjct: 137 GCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLL 196
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KASG + +HA K GY+S +++ ++L+ MY
Sbjct: 197 KASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMY---------------------- 234
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
A+CG M+ A+ F+ MP ++ VSW+ALI G+ + G+ + AL + +M+
Sbjct: 235 ---------ARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKN 285
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ T SVL ACA +GAL+QG+ + +MI GL L + +L+DMYAK G+I +A
Sbjct: 286 FQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAK 345
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + K DV+ WN M+ G A HG KE+L+ F +M +GI P+EI+FL +L+AC+H
Sbjct: 346 RVFDRLVK--PDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSH 403
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GL+ E Y+F+ + K + P HY VD L R G + A FI +MP+EPTA++ G+
Sbjct: 404 SGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGA 463
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL C H ++L ++ EL P G + LSN+YA RW + R+ M+ GV
Sbjct: 464 LLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGV 523
Query: 431 KKYPGWSFVE 440
KK P S+VE
Sbjct: 524 KKQPACSWVE 533
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 110/240 (45%), Gaps = 38/240 (15%)
Query: 190 GSKANEVTLVS-VLCACAHLGALDQGRMMLRYMIDKG-LSLTLPLQTSLIDMYAKCGAIK 247
GS + L S +L C LG ++QGR++ +++D L L LQ +++MYAKCG +
Sbjct: 81 GSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLD 140
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
+A +F E D++ W A+I G + + +++L LF +M +G P+ T LL A
Sbjct: 141 DARRMFD--EMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKA 198
Query: 308 CA--HG---GLVMEAW---YFFKS----------------------LGKRGMVPKSE-HY 336
HG G + A+ Y ++S L GM KSE +
Sbjct: 199 SGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSW 258
Query: 337 ACMVDALSRAGQVTEAYEFICQMP---LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
++ +R G+ A + +M +PT S+L+ C + G L+ + V +++
Sbjct: 259 NALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIK 318
>gi|125542569|gb|EAY88708.1| hypothetical protein OsI_10183 [Oryza sativa Indica Group]
Length = 510
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 169/451 (37%), Positives = 254/451 (56%), Gaps = 22/451 (4%)
Query: 4 FSALSYLGNIDYSCKVLS-HL------SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR 56
F+A+S G++ ++ +LS HL S+ F++NT++RG + S +P +I LF M R
Sbjct: 55 FAAVSPAGDLRHAAALLSLHLPFLSSASSHLAFFYNTLMRGLAASSSPAAAIELFAAMRR 114
Query: 57 AGVSPDHLTYPFLAKASGR-LAKRELAVAVHAQIAKTGY----ESDLFISNSLIHMYGSC 111
AG +PD T+ F K+ R +++R L +HAQ K G S + + N+L+H Y S
Sbjct: 115 AGAAPDAFTFTFALKSCSRCVSQRRLPSDLHAQAIKHGCLGAGSSHVHVHNALLHGYSSR 174
Query: 112 GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV 171
+ AR VFD MP + +S++ +L + K +++ AR VF+ MP R+VVSW+A+I Y
Sbjct: 175 AAVGDARRVFDEMPARDVISFSGLLTLHLKANDLDAARVVFDQMPHRDVVSWTAMISAYA 234
Query: 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
+ +EAL +F+ M + +EVT++SV+ AC LG L G + +Y+ G +
Sbjct: 235 RARRPREALALFDAM---PVQPDEVTMLSVVSACTALGDLATGERVCQYVDSNGFGWMVS 291
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
L+ +L+DMYAKCG++ EA +F G+ + WN I A HG V+ ++ LF M
Sbjct: 292 LRNALMDMYAKCGSLTEARNLFDGMTVRS--LASWNTFISAYASHGDVESTVALFHRMLA 349
Query: 292 VG--ITPDEITFLGLLSACAHGGLVMEAWYFFKSL--GKRGMVPKS-EHYACMVDALSRA 346
G + PD T L +L+A AH G V E F ++ G G V + EHY CMVD L RA
Sbjct: 350 DGKSVKPDGTTLLAVLTAYAHKGFVEEGRAMFNAILSGNYGKVDLTIEHYGCMVDLLGRA 409
Query: 347 GQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLS 406
GQ+ EAY+ I QMP+ + + G+LL C HG +++AE +KL L P+ G Y+ LS
Sbjct: 410 GQLEEAYKMIEQMPIPSNSVVWGALLGACRTHGDINMAERAVQKLRSLNPEEGGYYILLS 469
Query: 407 NVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
++YA R EA R M G +K G S
Sbjct: 470 DMYAASGRTTEAMEIRRIMNQAGAQKTAGQS 500
>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 702
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 144/415 (34%), Positives = 238/415 (57%), Gaps = 7/415 (1%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQI 89
WN++I GY+ + ++++S+F +L G+ D T + A +A VHAQ
Sbjct: 244 WNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQA 303
Query: 90 AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
G + F+ +L+ MY C D+ A+ FDG+ + + +WN ++ GYA C ++ +
Sbjct: 304 VVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQ 363
Query: 150 QVFELMP----ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
+ + M E NV +W+ +I G+V+ G + AL +F EM+ + + T+ +L AC
Sbjct: 364 NLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPAC 423
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
A L + +G+ + + I +G L + + +L+DMYAKCG+IK A+ V++ + +++
Sbjct: 424 ARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRIS--NPNLVS 481
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
NAM+ AMHG E + LF M G PD +TFL +LS+C H G V FF +
Sbjct: 482 QNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMT 541
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
+ P +HY C+VD LSRAG++ EAYE + ++P +P + M G+LL GC+ G ++L E
Sbjct: 542 YYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGE 601
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
I + L+EL+P++ G YV L+N+YA RW + TR+ ++ RG+ K PG S++E
Sbjct: 602 IAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIE 656
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 100/427 (23%), Positives = 183/427 (42%), Gaps = 57/427 (13%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
G +D + V + ++ W ++ + +++SLF K+ + + +P +
Sbjct: 107 FGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVV 166
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
K G L EL +H + K C D+ A ++F G K
Sbjct: 167 LKLCGGLRVLELGRQLHGVVIK------------------RCADMGSALKIFSGFSVKNV 208
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDYKEALVIFEE-M 186
VS+N+M+ GY + G + A+++F+ M ++ +SW+++I GY + EAL +F + +
Sbjct: 209 VSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLL 268
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ G +A+ TL SVL ACA + +L +G+ + + +GL + +L++MY+KC +
Sbjct: 269 MEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDL 328
Query: 247 KEALIVFHGVEKHQS---------------------------------DVLIWNAMIGGL 273
K A + F GV + + +V WN +I G
Sbjct: 329 KAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGH 388
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS 333
+G + +L LFTEMQ + PD T +L ACA + ++G
Sbjct: 389 VENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDV 448
Query: 334 EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV- 392
A +VD ++ G + A + ++ P ++LT HG D + + ++
Sbjct: 449 HIGAALVDMYAKCGSIKHAMQVYNRIS-NPNLVSQNAMLTAYAMHGHGDEGIALFRNMLG 507
Query: 393 -ELQPDH 398
+PDH
Sbjct: 508 NGFRPDH 514
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 45/223 (20%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I ++ +V + +SNP + N ++ Y+ + ++ I+LF ML G PDH+T+ +
Sbjct: 462 GSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSV- 520
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP----T 126
L+ VHA +TG+ E FD M T
Sbjct: 521 ----------LSSCVHAGAVETGH------------------------EFFDLMTYYNVT 546
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPER-NVVSWSALIDGYVKCGDYKEALVIFEE 185
+ ++D ++ G ++ A ++ + +P + + V W AL+ G V G+ + + E
Sbjct: 547 PSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAES 606
Query: 186 MRDV--GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL 226
+ ++ + N V L ++ LD+ R M++ D+G+
Sbjct: 607 LIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIK---DRGM 646
>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
[Brachypodium distachyon]
Length = 1430
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 153/431 (35%), Positives = 236/431 (54%), Gaps = 10/431 (2%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V + I WN++I Y ++ +++ LFV M++AG PD +T + A LA
Sbjct: 948 RVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLA 1007
Query: 78 KRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
VHA++ K+ + D+ +SN+L+ MY CG AR VFD M ++ VS S++
Sbjct: 1008 ADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLI 1067
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
GYA+ + A+ VF M E+NV++W+ LI Y + G+ +EAL +F ++
Sbjct: 1068 TGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHY 1127
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT------SLIDMYAKCGAIKEAL 250
T +VL AC ++ L G+ +++ +G ++ SL+DMY K G+I +
Sbjct: 1128 TYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGA 1187
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + D + WNAMI G A +G K++L LF M +PD +T +G+LSAC H
Sbjct: 1188 KVFERMAAR--DNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGH 1245
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E +F+S+ + G++P +HY CM+D L RAG + E E I +M +EP A +
Sbjct: 1246 SGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWA 1305
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL C H +++ E KL EL P + G YV LSN+YA +W + R +M+ RG
Sbjct: 1306 SLLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRG 1365
Query: 430 VKKYPGWSFVE 440
V K PG S++E
Sbjct: 1366 VSKQPGCSWIE 1376
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/430 (28%), Positives = 196/430 (45%), Gaps = 33/430 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S L+ G I + +V + + WN ++ GY +S + ++ LF +M + D +
Sbjct: 326 SGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAI 385
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T + A + VHA K G+ S + N+L+ MY CG + A +
Sbjct: 386 TLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLL--- 442
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+FE+ ER+ SW++LI GY + + AL
Sbjct: 443 --------------------------LFEMGSERDSYSWNSLISGYERHSMSEAALYALT 476
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+M+ + N+ T S L ACA++ L QG + YMI KG + L++ LIDMY KC
Sbjct: 477 KMQSEVTP-NQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCR 535
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
++ +F + DV++WN+MI G A G + L+LF EMQ GI D +TFLG
Sbjct: 536 QFDYSIRIFEA--RPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGA 593
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
L +C G V +F + ++P+ EHY CM++ L + G + E +F+ MP EPT
Sbjct: 594 LVSCISEGHVRLGRSYFTLMMDESIIPRIEHYECMIELLGKHGCMVELEDFVEHMPFEPT 653
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
+M + C +G L E K + + P ++V + Y EA +T +
Sbjct: 654 TAMWLRIFDCCREYGNRKLGERAAKCINDSNPLTPVQFVATVD-YESNDGGREAESTSFS 712
Query: 425 METRGVKKYP 434
E G ++ P
Sbjct: 713 SEGEGCEELP 722
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 190/380 (50%), Gaps = 12/380 (3%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+ + P WN ++R Y + + ++ +F +ML AGV P T A
Sbjct: 207 RAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNN 266
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
E +HA + + GYE + + +S++ MY CG + A+ +F+ P K V S++
Sbjct: 267 ALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVS 326
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
G A CG + A++VFE M ERN+VSW+A++ GY++ D AL++F++MR + + +T
Sbjct: 327 GLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAIT 386
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK--EALIVFH- 254
L SVL AC + + +G + + I G + L+ +L+ MY+KCG ++ E L++F
Sbjct: 387 LGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEM 446
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
G E+ D WN++I G H + +L T+MQ +TP++ TF L+ACA+ L+
Sbjct: 447 GSER---DSYSWNSLISGYERHSMSEAALYALTKMQ-SEVTPNQSTFSSALAACANIFLL 502
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
+ + ++G + ++D + Q + P + S++ G
Sbjct: 503 KQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVI-LWNSMIFG 561
Query: 375 CMNHGK----LDLAEIVGKK 390
C GK LDL + + K+
Sbjct: 562 CAYSGKGEYGLDLFDEMQKQ 581
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 162/352 (46%), Gaps = 62/352 (17%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
SA + LG + + +V + +P F +N ++ +++ P + +LF A PD
Sbjct: 803 SAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALF----HAIPDPDQC 858
Query: 65 TYPFLAKASGRLAKRELAV----AVHAQ------------IAKTGYESDLFISNSLIHMY 108
+Y + A + ++ A+ A+HA ++ E D S + + ++
Sbjct: 859 SYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKD---SRTGVQVH 915
Query: 109 GSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALID 168
+A++V+ G +++LD YAKC AR+VFE MPERN+VSW++LI
Sbjct: 916 ALVSKSPHAKDVYIG---------SALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLIT 966
Query: 169 GYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMM-LRYMIDKGLS 227
Y + G EALV+F M G +EVTL SV+ ACA L A +GR + R +
Sbjct: 967 CYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFR 1026
Query: 228 LTLPLQTSLIDMYAKCGAIKEALIVFH---------------------GVEKHQ------ 260
+ L +L+DMYAKCG + A VF VE Q
Sbjct: 1027 EDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQM 1086
Query: 261 --SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+V+ WN +I A +G +E+L LF ++ + P T+ +L+AC +
Sbjct: 1087 VEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGN 1138
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 130/277 (46%), Gaps = 39/277 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
N++ + V S + + WN +I Y+++ +++ LFV++ R V P H TY +
Sbjct: 1074 ANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVL 1133
Query: 71 KASGRLAKRELAVAVHAQIAKTGY------ESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
A G +A +L H + K G+ ESD+F+ NSL+ MY G I +VF+ M
Sbjct: 1134 NACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERM 1193
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ +VSWN+M+ G+A+ G K+AL +FE
Sbjct: 1194 AARDNVSWNAMIVGHAQNGRA-------------------------------KDALHLFE 1222
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKC 243
M + VT++ VL AC H G +++GR R M D G+ + T +ID+ +
Sbjct: 1223 RMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRA 1282
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G +KE + + + D ++W +++G +H V+
Sbjct: 1283 GHLKEVEELIKEMSM-EPDAVLWASLLGSCRLHKNVE 1318
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 16/310 (5%)
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K+ + ++ F+ N+L+ Y G + AR VFD +P + S+N++L +A+ G AR
Sbjct: 788 KSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARA 847
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F +P+ + S++A+I + +AL+ M N + S L ACA
Sbjct: 848 LFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKD 907
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
G + + + + + ++L+DMYAKC +EA VF + + +++ WN++I
Sbjct: 908 SRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMP--ERNIVSWNSLI 965
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
+G V E+L LF M G PDE+T ++SACA GL + + V
Sbjct: 966 TCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACA--GLAADR----EGRQVHARV 1019
Query: 331 PKSEHYA-------CMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
KS+ + +VD ++ G+ A +M S SL+TG ++
Sbjct: 1020 VKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSET-SLITGYARSANVED 1078
Query: 384 AEIVGKKLVE 393
A++V ++VE
Sbjct: 1079 AQMVFSQMVE 1088
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 132/309 (42%), Gaps = 64/309 (20%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I S++ +P++++SLF M G+ P T + A +H IA
Sbjct: 119 WNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAECLDLCGARQLHGHIA 178
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K ++S++ + +L+ +YG+C + AR FD + ++SWN ++ Y G +MA
Sbjct: 179 KRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMGDMA-- 236
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+D +F M G + T+ + AC A
Sbjct: 237 ----------------VD-------------MFFRMLSAGVRPLGYTVSHAVLACRDNNA 267
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA------------------------- 245
L++GR + +++ G + +++S++DMYAKCGA
Sbjct: 268 LEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSG 327
Query: 246 ------IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
I +A VF G++ + +++ WNAM+ G + +L LF +M+ D I
Sbjct: 328 LASCGRIADAKRVFEGMK--ERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAI 385
Query: 300 TFLGLLSAC 308
T +LSAC
Sbjct: 386 TLGSVLSAC 394
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 120/262 (45%), Gaps = 3/262 (1%)
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
+N ++ A CG + AR++F+LMP R+ SW+A+I + G EAL +F M +G
Sbjct: 88 FNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGI 147
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ + T+ SVL CA L R + ++ + + L T+L+D+Y C + +A
Sbjct: 148 RPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARR 207
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
F + + + + WN ++ + G ++++F M G+ P T + AC
Sbjct: 208 AFDDI--LEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDN 265
Query: 312 GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
+ E + + G + +VD ++ G + A P++ M S+
Sbjct: 266 NALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMV-MSTSI 324
Query: 372 LTGCMNHGKLDLAEIVGKKLVE 393
++G + G++ A+ V + + E
Sbjct: 325 VSGLASCGRIADAKRVFEGMKE 346
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 7/186 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+ID KV ++ WN +I G++++ ++ LF +ML + SPD +T +
Sbjct: 1181 GSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVL 1240
Query: 71 KASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM- 128
A G E + + G +I + G G + E+ M +
Sbjct: 1241 SACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPD 1300
Query: 129 SVSWNSMLDGYAKCGEMNM----ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+V W S+L + M A ++FEL P RN + L + Y + G + + +
Sbjct: 1301 AVLWASLLGSCRLHKNVEMGEWAAGKLFELDP-RNSGPYVLLSNMYAELGKWADVFRVRS 1359
Query: 185 EMRDVG 190
M+ G
Sbjct: 1360 SMKHRG 1365
>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
Length = 681
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 151/418 (36%), Positives = 232/418 (55%), Gaps = 3/418 (0%)
Query: 24 SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAV 83
SN + WN++I GY + ++ LF M + G+ D T + A L +
Sbjct: 265 SNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATILSACSSLCNSQHGK 324
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
+HA K G D ++++ I Y CG + A ++F + T ++ NSM+ Y+ G
Sbjct: 325 QMHAYACKVGLICDNVVASAFIDAYSKCGSLNDACKLFSELKTYDTILLNSMITVYSNSG 384
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
++ A+Q+F MP ++++SW+++I G + G EAL +F M + + N L SV+
Sbjct: 385 KIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALDLFCMMNKLDLRMNRFNLTSVIS 444
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
ACA + +L+ G + GL + TSL+D Y KCG I+ +F + K SD
Sbjct: 445 ACASISSLELGEQIFARATVVGLDSDEVISTSLVDFYCKCGFIEIGRKLFDTMMK--SDE 502
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
+ WN+M+ G A +G E+L LF EM+ G+ P EITF G+LSAC H GLV E W +F
Sbjct: 503 ISWNSMLMGYATNGHGLEALTLFNEMRHAGVRPTEITFTGVLSACDHCGLVKEGWRWFNI 562
Query: 324 LGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ + P EHY+CMVD +RAG + EA I +MP E ASM S+L GCM HG+ D
Sbjct: 563 MQYDYHIDPGIEHYSCMVDLFARAGCLEEAMNLIKRMPFEADASMWSSVLRGCMAHGEKD 622
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L E V ++++EL P++ G YV LS+++A W+ + R+ M+ R V+KYPG+S+
Sbjct: 623 LGEKVAQQIIELDPENSGAYVQLSSIFATSGDWESSALVRKVMQERQVQKYPGYSWAN 680
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 163/341 (47%), Gaps = 38/341 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP-- 61
FS + G ++ + ++ + + N WN++I Y+++ +P +++ LF ++ + P
Sbjct: 110 FSGFAKAGEMEIARRLFNEMPNRNGVVWNSMIHSYARNGSPREAVRLFKEL---NLDPLD 166
Query: 62 ----DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYA 117
D + A L + + +HA+I E D +++SLI++YG CGD+ A
Sbjct: 167 KSCCDTFVLATVIGACTDLGEIQCGKQIHARILIDNMELDSVLTSSLINLYGKCGDLDSA 226
Query: 118 REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
V + M S ++++ GYA G MN AR+ F VV W++LI GYV +
Sbjct: 227 HCVLNTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEI 286
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
EA ++F +M+ G K + TL ++L AC+ L G+ M Y GL + ++ I
Sbjct: 287 EAFLLFNDMQKKGLKVDFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVVASAFI 346
Query: 238 DMYAKCGAIKEALIVFHGVEKHQS-----------------------------DVLIWNA 268
D Y+KCG++ +A +F ++ + + ++ WN+
Sbjct: 347 DAYSKCGSLNDACKLFSELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNS 406
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
MI GL+ +G E+L+LF M + + + ++SACA
Sbjct: 407 MIVGLSQNGCPVEALDLFCMMNKLDLRMNRFNLTSVISACA 447
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 170/372 (45%), Gaps = 75/372 (20%)
Query: 85 VHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY---- 139
+H K G +S L ++N L+ MY CG + A ++FD MP + SWN+M++GY
Sbjct: 27 LHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDAHKLFDEMPHRNCFSWNTMIEGYMKSG 86
Query: 140 ---------------------------AKCGEMNMARQVFELMPERNVVSWSALIDGYVK 172
AK GEM +AR++F MP RN V W+++I Y +
Sbjct: 87 NKERSIRLFDMMSNKNDYSWNVVFSGFAKAGEMEIARRLFNEMPNRNGVVWNSMIHSYAR 146
Query: 173 CGDYKEALVIFEEMR-DVGSKA--NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229
G +EA+ +F+E+ D K+ + L +V+ AC LG + G+ + ++ + L
Sbjct: 147 NGSPREAVRLFKELNLDPLDKSCCDTFVLATVIGACTDLGEIQCGKQIHARILIDNMELD 206
Query: 230 LPLQTSLIDMYAKCGAIKEALIVFHGVE-----------------------------KHQ 260
L +SLI++Y KCG + A V + +E K
Sbjct: 207 SVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSN 266
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC-----AHGGLVM 315
S V++WN++I G + E+ LF +MQ G+ D T +LSAC + G M
Sbjct: 267 SCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATILSACSSLCNSQHGKQM 326
Query: 316 EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
A+ K G++ + + +DA S+ G + +A + ++ T +L S++T
Sbjct: 327 HAY-----ACKVGLICDNVVASAFIDAYSKCGSLNDACKLFSELKTYDTI-LLNSMITVY 380
Query: 376 MNHGKLDLAEIV 387
N GK++ A+ +
Sbjct: 381 SNSGKIEDAKQI 392
>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
Length = 587
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 167/510 (32%), Positives = 251/510 (49%), Gaps = 100/510 (19%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
F WN VI+ +S +P +++ F ML GVS D + + KA RL + + +H
Sbjct: 65 FLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGF 124
Query: 89 IAKTGYESDLFISNSLIHMY-------------------------------GSCGDIVYA 117
+ KTG SDLF+ N LI +Y CG I A
Sbjct: 125 LRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSA 184
Query: 118 REVFDGMPTKMS----------------------------------VSWNSMLDGYAKCG 143
RE+FD MP +M +SWNS++DGY K G
Sbjct: 185 RELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHG 244
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGS---------- 191
M A+ +F +MP R+VV+W+ +IDGY K G +A +F++M RDV +
Sbjct: 245 RMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQ 304
Query: 192 --------------------KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
+E TLV VL A A LG L + M +Y+++K L
Sbjct: 305 NKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSFPLGGK 364
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
L +LIDM++KCG+I++A+ VF G++ D WNAMIGGLA+HG + + ++ +++
Sbjct: 365 LGVALIDMHSKCGSIQQAISVFEGIKNKSIDH--WNAMIGGLAIHGHGELAFDMLMQIER 422
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVT 350
I PD+ITF+G+L+AC+H GLV E F+ + ++ + P+ +HY C+VD LSR+G +
Sbjct: 423 CSIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHYGCIVDILSRSGSIE 482
Query: 351 EAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410
A I MP+EP + + L C N + ++ E+V K L+ + YV LSN+YA
Sbjct: 483 LAKHLIEDMPMEPNDVIWRTFLIACRNRKEFEIGELVAKHLILQAGYNPSSYVLLSNMYA 542
Query: 411 IFKRWDEARTTREAMETRGVKKYPGWSFVE 440
W + R R M+ R + K PG S++E
Sbjct: 543 SLGMWKDVRRVRMMMKQRKLHKIPGCSWIE 572
>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 799
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 155/430 (36%), Positives = 244/430 (56%), Gaps = 2/430 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D + +VL + W T+I + + N +++ L+ +ML G P+ + +
Sbjct: 330 GDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVL 389
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L +HA+ K G +++F+S+SLI MY C A+ +FD +P K V
Sbjct: 390 SACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIV 449
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
WNS+ GY+ G+M A +F+ MP RN+ SW+ +I GY + + +AL F M G
Sbjct: 450 CWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASG 509
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
E+T SVL ACA+L +L G+M I G+ ++ + T+L DMYAK G ++ +
Sbjct: 510 QVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSK 569
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F+ + + ++DV W AMI GLA +G +ES+ LF +M G+TP+E TFL LL AC+H
Sbjct: 570 RMFYQMPE-RNDV-TWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSH 627
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GGLV +A ++F+ + G+ PK +HY CMVD L+RAG++ EA + + P + A+ +
Sbjct: 628 GGLVEQAIHYFEKMQAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAA 687
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL+ C + ++ E K+L EL D+ YV LSN+YA RW +A R M+ +
Sbjct: 688 LLSACNTYKNEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTL 747
Query: 431 KKYPGWSFVE 440
KK G S+V+
Sbjct: 748 KKDGGCSWVQ 757
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 190/388 (48%), Gaps = 36/388 (9%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
AL G + + ++ + + ++ I G+ +++ + ++ +F KM+ GV P+ +T
Sbjct: 192 ALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMVSCGVRPNGIT 251
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
+ + KA + LA+++ K+ + ES + + NSLI +Y GD AR+VFD M
Sbjct: 252 FVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEM 311
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
K VSW ++LD Y++ G+++ AR+V + MPERN VSW LI + + G+ EA+ ++
Sbjct: 312 DVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYS 371
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+M G + N SVL ACA L L G + + G S + + +SLIDMY KC
Sbjct: 372 QMLADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCK 431
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM--------------- 289
++A +F + + +++ WN++ G + +G + E++ LF +M
Sbjct: 432 KCRDAQTIFDTLP--EKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGY 489
Query: 290 ----QIV------------GITPDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPK 332
Q V G P EITF +L ACA+ LV K++ K GM
Sbjct: 490 AQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTI-KLGMEES 548
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMP 360
+ D +++G + + QMP
Sbjct: 549 IFIGTALSDMYAKSGDLQSSKRMFYQMP 576
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 131/300 (43%), Gaps = 45/300 (15%)
Query: 47 SISLFVKMLRAGVSPD-----HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFIS 101
++SL +R+GV+ D HL + A A R V A A F
Sbjct: 102 ALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASP------FTY 155
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV 161
+ ++H + GDI AR +FDGMP + VS+ +M+D K G + A +++E P +V
Sbjct: 156 DFMVHEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVA 215
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
++A I G+V+ + AL +F +M G + N +T V ++ AC G ++
Sbjct: 216 FFTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSA 275
Query: 222 IDKG-LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI------GGL- 273
I ++ +Q SLI +Y + G A VF E DV+ W A++ G L
Sbjct: 276 IKSNFFESSIEVQNSLITLYLRMGDAAAARKVFD--EMDVKDVVSWTALLDVYSESGDLD 333
Query: 274 ---------------------AMH---GFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
A H G E+++L+++M G P+ F +LSACA
Sbjct: 334 GARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACA 393
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 153/448 (34%), Positives = 257/448 (57%), Gaps = 25/448 (5%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS---- 73
K+ + + N + WNT+I GY+++ + ++ LF KM V + LA+
Sbjct: 136 KLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEE 195
Query: 74 -----GRLAKRELA--VAVHAQIAKTGY------------ESDLFISNSLIHMYGSCGDI 114
R+ +R++ A+ A ++K G E ++ N++I Y +
Sbjct: 196 ARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRL 255
Query: 115 VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
A ++F+ MP + SWN+M+ G + G++ AR++F MP++NV+SW+ +I G V+ G
Sbjct: 256 DEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEG 315
Query: 175 DYKEALVIFEEMRDV-GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
+ +EAL IF M G+K N+ T VSVL AC++L L +G+ + + + + +
Sbjct: 316 ESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVV 375
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
++LI+MY+KCG + A +F Q D++ WN +I A HG+ KE++ F EM+ G
Sbjct: 376 SALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSG 435
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEA 352
PD++T++GLLSAC+H GLV E +F L K R ++ + +HYAC+VD RAG++ EA
Sbjct: 436 FKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEA 495
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412
+ FI ++ +P+A + G+LL GC H + + + KKL+E++P++ G Y+ LSN+YA
Sbjct: 496 FGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYAST 555
Query: 413 KRWDEARTTREAMETRGVKKYPGWSFVE 440
+W EA R M+ +G+KK PG S++E
Sbjct: 556 GKWREAARVRLKMKDKGLKKQPGCSWIE 583
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 171/388 (44%), Gaps = 60/388 (15%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
+ LS G I + ++ + P + W TVI GY K ++ LF
Sbjct: 59 ITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLF------------ 106
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+ + ++ +++ Y I A ++F+
Sbjct: 107 --------------------------DRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNE 140
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
MP K VSWN+M+DGYA+ G ++ A +FE MPERNVVSW+ ++ +CG +EA +F
Sbjct: 141 MPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLF 200
Query: 184 EEM--RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+ M RDV ++ +++ + G +D+ R++ M ++ + ++I YA
Sbjct: 201 DRMPERDV------ISWTAMIAGLSKNGRIDEARLLFDRMPERNVV----SWNAMITGYA 250
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
+ + EAL +F + + D+ WN MI GL +G ++ + +LF EM + I++
Sbjct: 251 QNLRLDEALDLFERMP--ERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNV----ISW 304
Query: 302 LGLLSACAHGGLVMEAWYFF-KSLGKRGMVPKSEHYACMVDALSR---AGQVTEAYEFIC 357
+++ C G EA F + L G P + ++ A S G+ + ++ I
Sbjct: 305 TTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIIS 364
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAE 385
+ + + ++ +L+ G+L A
Sbjct: 365 KTVYQDSTFVVSALINMYSKCGELGTAR 392
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 143/284 (50%), Gaps = 20/284 (7%)
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELM-PERNV 160
N +I G I+ AR +FD M ++W +++ GY KCG + AR++F+ + ++NV
Sbjct: 56 NWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNV 115
Query: 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY 220
V+W+A++ GY++ +A +F EM N V+ +++ A G +D Y
Sbjct: 116 VTWTAMVGGYIRSNKISDAEKLFNEM----PNKNVVSWNTMIDGYAQNGRIDSA----MY 167
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+ +K + +++ M A+CG I+EA +F + + DV+ W AMI GL+ +G +
Sbjct: 168 LFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMP--ERDVISWTAMIAGLSKNGRID 225
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMV 340
E+ LF M + +++ +++ A + EA F+ + +R + + M+
Sbjct: 226 EARLLFDRMPERNV----VSWNAMITGYAQNLRLDEALDLFERMPERDL----PSWNTMI 277
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
L + G + A + +MP + S +++TGC+ G+ + A
Sbjct: 278 TGLIQNGDLRRARKLFNEMPKKNVISWT-TMITGCVQEGESEEA 320
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 121/259 (46%), Gaps = 24/259 (9%)
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
+ ++++ R+ F + + NV + +I K G EA +F+EMR+ + +T +
Sbjct: 35 RTAKISIPRKDFTV--DGNVARCNWMITNLSKDGRIMEARRLFDEMRE----PDVITWTT 88
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
V+ G +++ R + + K +T T+++ Y + I +A +F+ E
Sbjct: 89 VISGYIKCGMIEEARRLFDRVDAKKNVVTW---TAMVGGYIRSNKISDAEKLFN--EMPN 143
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
+V+ WN MI G A +G + ++ LF +M + +++ ++S A G + EA
Sbjct: 144 KNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNV----VSWNTVMSMLAQCGRIEEARRL 199
Query: 321 FKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
F + +R ++ + M+ LS+ G++ EA +MP E +++TG + +
Sbjct: 200 FDRMPERDVI----SWTAMIAGLSKNGRIDEARLLFDRMP-ERNVVSWNAMITGYAQNLR 254
Query: 381 LDLAEIVGKKLVELQPDHD 399
LD A L E P+ D
Sbjct: 255 LDEA----LDLFERMPERD 269
>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
Length = 664
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/438 (36%), Positives = 242/438 (55%), Gaps = 16/438 (3%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+ Y+ V S LS P F ++R ++ P ++ LF + LR D PFL A
Sbjct: 104 LRYAVAVFSSLSPPDPFLAAALLRFAHLTQPPLETFRLFSR-LRCAHGSD---LPFLPFA 159
Query: 73 SGRLAKRELAVAVHAQIAKT--------GYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
LAK A A G++ F+ NSLI Y +CGD+ AR+VFD M
Sbjct: 160 FSPLAKSAAAARSLHAAASAHAVSLLLGGFDKHRFVENSLISAYVACGDVGAARKVFDEM 219
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
K +SW S++ Y++ +M A +VF L P +++V+W+A++ GY + +AL FE
Sbjct: 220 LVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFE 279
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+M G +EV+L + ACA LGA+ + + GL + + + L+DMYAKCG
Sbjct: 280 QMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEIAERNGLGRNVVVGSGLVDMYAKCG 339
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM-QIVGITPDEITFLG 303
I EA VF G+ H +V +++MI GLA HG + + LF +M + + P+ +TF+G
Sbjct: 340 LIDEARKVFEGM--HDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRADVEPNHVTFIG 397
Query: 304 LLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+L+AC+H G+V E Y+F + R G++P ++HYACMVD L+R+G VTEA + + M +E
Sbjct: 398 VLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYACMVDLLARSGLVTEALDLVKSMTVE 457
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P + G+LL C HG ++A+I + L L+P+ G YV LSN A WDE R
Sbjct: 458 PHGGVWGALLGACRIHGNTEVAKIAAEHLFRLEPEGIGNYVLLSNTLASAGEWDEVSKLR 517
Query: 423 EAMETRGVKKYPGWSFVE 440
+ M RG+KK P S+ E
Sbjct: 518 KLMRIRGLKKDPAVSWFE 535
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 123/308 (39%), Gaps = 69/308 (22%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKN--------------------- 43
SA G++ + KV + + W +++ YS+ ++
Sbjct: 201 SAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMVAWTA 260
Query: 44 ----------PNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTG 93
P K++ F +M AG+ D ++ A +L + A V + G
Sbjct: 261 MVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEIAERNG 320
Query: 94 YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFE 153
++ + + L+ MY CG I AR+VF+GM K +++SM+ G A G N
Sbjct: 321 LGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRAN------- 373
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDVGSKANEVTLVSVLCACAHLGALD 212
+ + +F +M R + N VT + VL AC+H G +
Sbjct: 374 ------------------------DVIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVK 409
Query: 213 QGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHG--VEKHQSDVLIWNAM 269
+GR M D+ G+ + ++D+ A+ G + EAL + VE H +W A+
Sbjct: 410 EGRYYFAQMKDRYGILPSADHYACMVDLLARSGLVTEALDLVKSMTVEPHGG---VWGAL 466
Query: 270 IGGLAMHG 277
+G +HG
Sbjct: 467 LGACRIHG 474
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/430 (35%), Positives = 234/430 (54%), Gaps = 33/430 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + ++ + + W +I G+S++ P ++ LF +MLR G+ P+H T L
Sbjct: 137 GCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLL 196
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KASG + +HA K GY+S +++ ++L+ MY
Sbjct: 197 KASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMY---------------------- 234
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
A+CG M+ A+ F+ MP ++ VSW+ALI G+ + G+ + AL + +M+
Sbjct: 235 ---------ARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKN 285
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ T SV ACA +GAL+QG+ + +MI GL L + +L+DMYAK G+I +A
Sbjct: 286 FQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAK 345
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + K DV+ WN M+ G A HG KE+L+ F +M +GI P+EI+FL +L+AC+H
Sbjct: 346 RVFDRLVK--PDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSH 403
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GL+ E Y+F+ + K + P HY VD L R G + A FI +MP+EPTA++ G+
Sbjct: 404 SGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGA 463
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL C H ++L ++ EL P G + LSN+YA RW + R+ M+ GV
Sbjct: 464 LLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGV 523
Query: 431 KKYPGWSFVE 440
KK P S+VE
Sbjct: 524 KKQPACSWVE 533
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 38/240 (15%)
Query: 190 GSKANEVTLVS-VLCACAHLGALDQGRMMLRYMIDKG-LSLTLPLQTSLIDMYAKCGAIK 247
GS + L S +L C LG ++QGR++ +++D L L LQ +++MYAKCG +
Sbjct: 81 GSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLD 140
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
+A +F E D++ W A+I G + + +++L LF +M +G+ P+ T LL A
Sbjct: 141 DARRMFD--EMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKA 198
Query: 308 CA--HG---GLVMEAW---YFFKS----------------------LGKRGMVPKSE-HY 336
HG G + A+ Y ++S L GM KSE +
Sbjct: 199 SGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSW 258
Query: 337 ACMVDALSRAGQVTEAYEFICQMP---LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
++ +R G+ A + +M +PT S+ + C + G L+ + V +++
Sbjct: 259 NALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIK 318
>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 156/432 (36%), Positives = 229/432 (53%), Gaps = 11/432 (2%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
++L L+ P WN +I GY + ++ F +M G+ D TY L A G
Sbjct: 238 ELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCN 297
Query: 78 KR----ELAVAVHAQIAKTGYESD----LFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
++ VH I +T E L ++N+LI Y ++ AR VFD MP +
Sbjct: 298 EKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDI 357
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+SWN++L GY + A +F MPERNV++W+ +I G + G +E L +F +M+
Sbjct: 358 ISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSE 417
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G + + + AC+ LG+LD G+ + +I G L +LI MY++CG ++ A
Sbjct: 418 GLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESA 477
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF + D + WNAMI LA HG +++ELF +M I PD ITFL +L+AC
Sbjct: 478 ESVF--LTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACN 535
Query: 310 HGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GL+ E ++F ++ R G+ P +HYA ++D L RAG +A I MP E A +
Sbjct: 536 HAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIW 595
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+LL GC HG ++L +L+EL P DG Y+ LSN+YA +WDE R M R
Sbjct: 596 EALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRER 655
Query: 429 GVKKYPGWSFVE 440
GVKK PG S+VE
Sbjct: 656 GVKKEPGCSWVE 667
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 113/442 (25%), Positives = 190/442 (42%), Gaps = 59/442 (13%)
Query: 4 FSALSYLGNIDYSCKVL--SHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP 61
SA S GN+ + ++ + L+ +N +I YS + + +++LFV+M R G P
Sbjct: 78 LSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLP 137
Query: 62 DHLTYPFLAKASGRLAKRELAVA-VHAQIAKTGYESDLFISNSLIHMYGSCGD------- 113
D T+ + A +A E +H ++ K G ++N+L+ Y C
Sbjct: 138 DPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSS 197
Query: 114 --IVYAREVFDGMPTKM--SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDG 169
+ AR+VFD P SW +M+ GY + ++ AR++ + + V+W+A+I G
Sbjct: 198 QLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISG 257
Query: 170 YVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA----HLGALDQGRM----MLRYM 221
YV+ G Y+EA F M +G + +E T S++ AC +G + GR +LR +
Sbjct: 258 YVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTV 317
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV------------------------- 256
++ L + +LI Y K + EA VF +
Sbjct: 318 VEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEAN 377
Query: 257 ----EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
E + +VL W MI GLA +GF +E L+LF +M+ G+ P + F G ++AC+ G
Sbjct: 378 SIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLG 437
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
+ + + G ++ SR G V A MP + S +++
Sbjct: 438 SLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSW-NAMI 496
Query: 373 TGCMNHGKLDLAEIVGKKLVEL 394
HG G K +EL
Sbjct: 497 AALAQHGH-------GVKAIEL 511
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 172/381 (45%), Gaps = 52/381 (13%)
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
L Y +L + + + +A AVHA I +G++ + FI N LI++Y +I YAR++FD
Sbjct: 6 LAYRYLTQLNHVSTTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDK 65
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE--RNVVSWSALIDGYVKCGDYKEALV 181
+P V+ ++L Y+ G + +A+Q+F P R+ VS++A+I Y D AL
Sbjct: 66 IPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALN 125
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP-LQTSLIDMY 240
+F +M+ G + T SVL A + + ++ ML + K +L +P + +L+ Y
Sbjct: 126 LFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCY 185
Query: 241 AKCGA---------IKEALIVFHGVEKHQ---------------SDVLI----------- 265
C + + A VF K+Q +D L+
Sbjct: 186 VCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTY 245
Query: 266 -----WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
WNAMI G G +E+ + F M +GI DE T+ L+SAC M +
Sbjct: 246 PIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNC 305
Query: 321 FKSLGK---RGMVPKSEHYACMVDA-----LSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
+ + R +V S H+ V+ ++ ++ EA +MP+ S ++L
Sbjct: 306 GRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISW-NAVL 364
Query: 373 TGCMNHGKLDLAEIVGKKLVE 393
+G +N +++ A + ++ E
Sbjct: 365 SGYVNAQRIEEANSIFSEMPE 385
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 33/266 (12%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
I+ + + S + + W +I G +++ + + LF +M G+ P + A
Sbjct: 373 IEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITA 432
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
L + +H+Q+ + G++S L N+LI MY CG + A VF MP SVSW
Sbjct: 433 CSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSW 492
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
N+M+ A+ G A ++FE M + +++
Sbjct: 493 NAMIAALAQHGHGVKAIELFEQMMKEDIL------------------------------- 521
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ +T +++L AC H G + +GR M + G++ LID+ + G +A
Sbjct: 522 PDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQS 581
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHG 277
V + ++ IW A++ G +HG
Sbjct: 582 VIKSM-PFEAGAPIWEALLAGCRIHG 606
>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 798
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 155/430 (36%), Positives = 244/430 (56%), Gaps = 2/430 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D + +VL + W T+I + + N +++ L+ +ML G P+ + +
Sbjct: 329 GDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVL 388
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L +HA+ K G +++F+S+SLI MY C A+ +FD +P K V
Sbjct: 389 SACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIV 448
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
WNS+ GY+ G+M A +F+ MP RN+ SW+ +I GY + + +AL F M G
Sbjct: 449 CWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASG 508
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
E+T SVL ACA+L +L G+M I G+ ++ + T+L DMYAK G ++ +
Sbjct: 509 QVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSK 568
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F+ + + ++DV W AMI GLA +GF +ES+ L +M G+TP+E TFL LL AC+H
Sbjct: 569 RMFYQMPE-RNDV-TWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSH 626
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GGLV +A ++F+ + G+ PK +HY CMVD L+RAG++ EA + + P + A+ +
Sbjct: 627 GGLVEQAIHYFEKMQAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAA 686
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL+ C + ++ E K+L EL D+ YV LSN+YA RW +A R M+ +
Sbjct: 687 LLSACNTYKNEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTL 746
Query: 431 KKYPGWSFVE 440
KK G S+V+
Sbjct: 747 KKDGGCSWVQ 756
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 190/388 (48%), Gaps = 36/388 (9%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
AL G + + ++ + + ++ I G+ +++ + ++ +F KM+ GV P+ +T
Sbjct: 191 ALMKRGRVAEAVELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMVSCGVRPNGIT 250
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
+ + KA + LA+++ K+ + ES + + NSLI +Y GD AR+VFD M
Sbjct: 251 FVCMIKACVGAGEFGLAMSIVGSAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEM 310
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
K VSW ++LD Y++ G+++ AR+V + MPERN VSW LI + + G+ EA+ ++
Sbjct: 311 DVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYS 370
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+M G + N SVL ACA L L G + + G S + + +SLIDMY KC
Sbjct: 371 QMLADGCRPNISCFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCK 430
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM--------------- 289
++A +F + + +++ WN++ G + +G + E++ LF +M
Sbjct: 431 KCRDAQTIFDTLP--EKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGY 488
Query: 290 ----QIV------------GITPDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPK 332
Q V G P EITF +L ACA+ LV K++ K GM
Sbjct: 489 AQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTI-KLGMEES 547
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMP 360
+ D +++G + + QMP
Sbjct: 548 IFIGTALSDMYAKSGDLQSSKRMFYQMP 575
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 131/300 (43%), Gaps = 45/300 (15%)
Query: 47 SISLFVKMLRAGVSPD-----HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFIS 101
++SL +R+GV+ D HL + A A R V A A F
Sbjct: 101 ALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASP------FTY 154
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV 161
+ ++H + GDI AR +FDGMP + VS+ +M+D K G + A +++E P +V
Sbjct: 155 DFMVHEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVA 214
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
++A I G+V+ + AL +F +M G + N +T V ++ AC G ++
Sbjct: 215 FFTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSA 274
Query: 222 IDKG-LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI------GGL- 273
I ++ +Q SLI +Y + G A VF E DV+ W A++ G L
Sbjct: 275 IKSNFFESSIEVQNSLITLYLRMGDAAAARKVFD--EMDVKDVVSWTALLDVYSESGDLD 332
Query: 274 ---------------------AMH---GFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
A H G E+++L+++M G P+ F +LSACA
Sbjct: 333 GARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACA 392
>gi|255540655|ref|XP_002511392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550507|gb|EEF51994.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/401 (38%), Positives = 245/401 (61%), Gaps = 10/401 (2%)
Query: 45 NKSISLFVKMLRA-GVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNS 103
+ +++LF M + +S D +P + K+ + +L +VHA I K G+ S+ F++++
Sbjct: 44 HDALTLFYHMQTSLALSLDPYVFPLVLKSCSAVLCPQLGTSVHAHIVKMGFLSNPFVASA 103
Query: 104 LIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP-ERNVVS 162
L+ MYG C I AR++FD +P + V WN+M+ Y + A +F+ M E NV +
Sbjct: 104 LVDMYGKCACIFSARKLFDEIPQRNVVVWNAMISLYTHSNRVRDALDMFDAMEIEPNVST 163
Query: 163 WSALIDGY--VKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY 220
++ALI G VK G K A+ + +MR +G K N +TL+++L AC + AL+ R + Y
Sbjct: 164 FNALIYGLSGVKDGSIK-AIAFYWKMRQLGLKPNLITLLALLPACVGIAALNLIREIHGY 222
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
I + L + L+D Y +CG + A VF G++ + DV+ W+++I A+HG K
Sbjct: 223 SIRNDIDRHPQLGSGLLDAYGRCGCLINASNVFCGMK--ERDVVAWSSLISAYALHGEAK 280
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL--GKRGMVPKSEHYAC 338
+LE+F +M++ + PD+ITFL +L AC+H GL EA +F + G R + S+HY+C
Sbjct: 281 NALEIFRQMELAKVQPDDITFLAVLKACSHAGLADEALDYFTKMQEGYR-LQAVSDHYSC 339
Query: 339 MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398
+VD LSRAG++ EAY+ I +MP++ TA G+LL C +G+++LAEIVG+ L E++PD+
Sbjct: 340 LVDVLSRAGRLYEAYKVIQEMPVKVTAKAWGALLGACRTYGEIELAEIVGRALFEIEPDN 399
Query: 399 DGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
YV L+ +YA R+DEA+ R M+ RGVK PG S+V
Sbjct: 400 PANYVLLARIYASVGRYDEAQRIRREMKERGVKVSPGSSWV 440
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 128/307 (41%), Gaps = 37/307 (12%)
Query: 26 PRIFYWNTVIRGYSKSKNPN-KSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVA 84
P + +N +I G S K+ + K+I+ + KM + G+ P+ +T L A +A L
Sbjct: 159 PNVSTFNALIYGLSGVKDGSIKAIAFYWKMRQLGLKPNLITLLALLPACVGIAALNLIRE 218
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+H + + + + L+ YG CG ++ A VF GM + V+W+S++ YA GE
Sbjct: 219 IHGYSIRNDIDRHPQLGSGLLDAYGRCGCLINASNVFCGMKERDVVAWSSLISAYALHGE 278
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
K AL IF +M + +++T ++VL A
Sbjct: 279 A-------------------------------KNALEIFRQMELAKVQPDDITFLAVLKA 307
Query: 205 CAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
C+H G D+ M + L + L+D+ ++ G + EA V + +
Sbjct: 308 CSHAGLADEALDYFTKMQEGYRLQAVSDHYSCLVDVLSRAGRLYEAYKVIQEMPV-KVTA 366
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC-AHGGLVMEAWYFFK 322
W A++G +G ++ L + I PD LL+ A G EA +
Sbjct: 367 KAWGALLGACRTYGEIE--LAEIVGRALFEIEPDNPANYVLLARIYASVGRYDEAQRIRR 424
Query: 323 SLGKRGM 329
+ +RG+
Sbjct: 425 EMKERGV 431
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 239/434 (55%), Gaps = 37/434 (8%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
GN+ + KV + + WN++I Y ++ +P + F KM G+ PD LT L
Sbjct: 321 FGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSL 380
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A + + + + +VH I + G+ + +
Sbjct: 381 ASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIG--------------------------- 413
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF---EEM 186
N+++D YAK G ++ A +VF L+P ++VVSW+ LI GY + G EA+ ++ EE
Sbjct: 414 ---NAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEEC 470
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
R++ K N+ T VS+L A AH+GAL QG + ++I L L + + T LID+Y KCG +
Sbjct: 471 REI--KLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRL 528
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+A+ +F+ V + S + WNA+I +HG +++L+LF EMQ G+ PD +TF+ LLS
Sbjct: 529 VDAMCLFYQVPRESS--VPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLS 586
Query: 307 ACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
AC+H GLV E +FF + + G+ P +HY CMVD L RAG + AY+FI MPL P AS
Sbjct: 587 ACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDAS 646
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ G+LL C HG ++L + +L E+ ++ G YV LSN+YA +W+ R
Sbjct: 647 IWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLAR 706
Query: 427 TRGVKKYPGWSFVE 440
RG+KK PGWS +E
Sbjct: 707 ERGLKKTPGWSSIE 720
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/372 (25%), Positives = 176/372 (47%), Gaps = 39/372 (10%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPF 68
LG++ S + ++ WN++I Y ++ + ++I F ++L D T+P
Sbjct: 121 LGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPP 180
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+ KA L +H + K G++ D+F++ SLIHMY
Sbjct: 181 VLKACQTLVD---GRKIHCWVFKLGFQWDVFVAASLIHMY-------------------- 217
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
++ G + +AR +F+ MP R++ SW+A+I G ++ G+ +AL + +EMR
Sbjct: 218 -----------SRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 266
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G + VT+ S+L CA LG + ++ Y+I GL L + +LI+MYAK G + +
Sbjct: 267 EGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGD 326
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A VF + DV+ WN++I + + F +MQ+ G+ PD +T + L S
Sbjct: 327 AQKVFQ--QMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIA 384
Query: 309 AHGGLVMEAWYFFKSLGKRGMVPKSEHYA-CMVDALSRAGQVTEAYEFICQMPLEPTASM 367
A + + +RG + ++ ++D ++ G + A++ +P++ S
Sbjct: 385 AQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSW 444
Query: 368 LGSLLTGCMNHG 379
+L++G +G
Sbjct: 445 -NTLISGYTQNG 455
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 129/265 (48%), Gaps = 10/265 (3%)
Query: 107 MYGSCGDIVYAREVFDGMPTKMSVSWN----SMLDGYAKCGEMNMARQVFELMPERNVVS 162
++ SC + A+ + + + N +++ YA G+++++R F+ + ++V +
Sbjct: 82 LFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYT 141
Query: 163 WSALIDGYVKCGDYKEALVIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYM 221
W+++I YV+ G ++EA+ F ++ V +A+ T VL AC L GR + ++
Sbjct: 142 WNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQ---TLVDGRKIHCWV 198
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
G + + SLI MY++ G + A +F + D+ WNAMI GL +G +
Sbjct: 199 FKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFR--DMGSWNAMISGLIQNGNAAQ 256
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
+L++ EM++ GI D +T +L CA G + A + K G+ + +++
Sbjct: 257 ALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALIN 316
Query: 342 ALSRAGQVTEAYEFICQMPLEPTAS 366
++ G + +A + QM L S
Sbjct: 317 MYAKFGNLGDAQKVFQQMFLRDVVS 341
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/443 (36%), Positives = 238/443 (53%), Gaps = 9/443 (2%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR--AGVSPD 62
SA S G + + +L + P + +N++I G +S+++F ML+ + V D
Sbjct: 88 SAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLFD 147
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
T L + L EL VH G S++ I N+LI YG CG+ + +F
Sbjct: 148 EFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFS 207
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
MP + VSW SM+ YA+ + A +F M E+N VSW+ALI G+ + G EAL +
Sbjct: 208 RMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHL 267
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLTLPLQTSLIDM 239
FE+MR+ G + T SVL ACA L + +G+ + ++I + + +LIDM
Sbjct: 268 FEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDM 327
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y KCG ++ A +F G+ H+ D++ WN++I G A +G +ESL +F M I P+ +
Sbjct: 328 YCKCGQMRSATTLFKGM--HEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHV 385
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
TFLGLLSAC H GLV E S+ K G+ P+S+HYA M+D L R ++ EA I +
Sbjct: 386 TFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKR 445
Query: 359 MPL-EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
P M G+LL C HG +DLA + L +L+P + RYV + N+YA RWDE
Sbjct: 446 APKGSDHVGMWGALLGACRIHGNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAASRWDE 505
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
AR R M RG++K S++E
Sbjct: 506 ARQVRRLMMERGLRKEAACSWIE 528
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 170/382 (44%), Gaps = 45/382 (11%)
Query: 57 AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
+ + P H Y L +L +H+ KT F++N LI Y C I
Sbjct: 8 SSLDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQS 67
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
A +VF +P K + SWN ++ Y++ G N A + + MP+ N+VS+++LI G G
Sbjct: 68 AHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFR 127
Query: 177 KEALVIFEEMRDVGSKA--NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT 234
KE+L +F+ M S +E TLVS++ +CA LGA + R + I GL+ + +
Sbjct: 128 KESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGN 187
Query: 235 SLIDMYAKCGAIKEALIVFHGV-----------------------------EKHQSDVLI 265
+LID Y KCG + +F + + + + +
Sbjct: 188 ALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVS 247
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
W A+I G A +G E+L LF +M+ GI P TF +LSACA L+ K +
Sbjct: 248 WTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARG----KEIH 303
Query: 326 KRGMVPKSEHYAC-------MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNH 378
+ Y C ++D + GQ+ A M + S SL+TG +
Sbjct: 304 GHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSW-NSLITGFAQN 362
Query: 379 GKLDLAEIVGKKLVE--LQPDH 398
G + + V ++++E ++P+H
Sbjct: 363 GHGEESLAVFERMIEADIRPNH 384
>gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 157/426 (36%), Positives = 242/426 (56%), Gaps = 24/426 (5%)
Query: 21 SHLSNP--RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
SH +P I W + I + ++ ++ + F +M AGV P+H+T+ L A
Sbjct: 45 SHTHSPIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPL 104
Query: 79 RELAV--AVHAQIAKTGYES-DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSM 135
L ++HA + K G ++ ++ + +L+ MY CG + A +FD M + SVSWN+M
Sbjct: 105 EGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTM 164
Query: 136 LDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE 195
+DG + GE+ A +F+ M ER+ +SW+++I G+VK G +++AL F EM+ G + +
Sbjct: 165 IDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDY 224
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
VT++SVL ACA+LGAL G + R+++ + + + SLIDMY++CG I+ A VF
Sbjct: 225 VTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQ 284
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
+ K ++ WN+MI G A++G +E+LE F M+ G H GLV
Sbjct: 285 MPKRS--LVSWNSMIVGFALNGHAEEALEFFNLMRKEG----------------HSGLVD 326
Query: 316 EAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
E FF + + R + P+ EHY C+VD SRAG++ +A I MP++P +LGSLL
Sbjct: 327 EGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAA 386
Query: 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
C HG + LAE + K L E+ P D YV LSN+YA RWD A R+ M+ G+ K P
Sbjct: 387 CRTHGDVGLAERLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKP 446
Query: 435 GWSFVE 440
G+S +E
Sbjct: 447 GFSSIE 452
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 121/260 (46%), Gaps = 32/260 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + + + +S W ++I G+ K +++ F +M AGV PD++T +
Sbjct: 172 GEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVL 231
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L L + ++ + K ++ ++ ISNSLI MY CG I AR+VF+ MP + V
Sbjct: 232 AACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLV 291
Query: 131 SWNSMLDGYAKCGE-------MNMAR------------QVFELMPERNVVS-----WSAL 166
SWNSM+ G+A G N+ R Q F++M +S + L
Sbjct: 292 SWNSMIVGFALNGHAEEALEFFNLMRKEGHSGLVDEGLQFFDIMKRTRKISPRIEHYGCL 351
Query: 167 IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM--IDK 224
+D Y + G ++AL + M K NEV L S+L AC G + +++Y+ +D
Sbjct: 352 VDLYSRAGRLEDALNVIANM---PMKPNEVVLGSLLAACRTHGDVGLAERLMKYLCEVDP 408
Query: 225 GLSLTLPLQTSLIDMYAKCG 244
G L L ++YA G
Sbjct: 409 GSDSNYVL---LSNIYAAVG 425
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 156/394 (39%), Positives = 230/394 (58%), Gaps = 6/394 (1%)
Query: 49 SLFVKMLRAG-VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHM 107
SL + LR+G + D L + + A E+A+A A D+F+ N ++
Sbjct: 68 SLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAA--FDEAPRRDVFLCNVMLAA 125
Query: 108 YGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALI 167
Y + G++ AR+VFDGM + VSWN+M+ GYA G++ MAR++F+ +R+ SWS++I
Sbjct: 126 YVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMI 185
Query: 168 DGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS 227
Y K KEAL ++ EMR G + +++VSVL AC+ +GAL G + R++ +
Sbjct: 186 SAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVE 245
Query: 228 LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFT 287
+ + L T+L+DMYAKCG I+ +L VFH + DVL W++MI GLA HG ++L LF+
Sbjct: 246 VDMKLGTALVDMYAKCGDIENSLKVFHAMP--VKDVLTWSSMIIGLANHGLGHDALSLFS 303
Query: 288 EMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRA 346
EM G+ P+EITF+G+L AC H GLV + +F S+ G+VP+ EHY CMVD L RA
Sbjct: 304 EMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRA 363
Query: 347 GQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLS 406
G V EA E I M +P + +LL C H +++AE KL L P DG YV LS
Sbjct: 364 GHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLS 423
Query: 407 NVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
N+YA W+ R+ + +++ PG S +E
Sbjct: 424 NIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIE 457
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 134/319 (42%), Gaps = 64/319 (20%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRG-------------------------------YS 39
G + + KV +S + WNT+I G Y+
Sbjct: 130 GEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYA 189
Query: 40 KSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
K + +++ L+ +M AGV+PD ++ + A + + VH + E D+
Sbjct: 190 KGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMK 249
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
+ +L+ MY CGDI + +VF MP K ++W+SM+ G A G +
Sbjct: 250 LGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGH------------- 296
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
+AL +F EM G + NE+T + VL AC H+G ++ G+
Sbjct: 297 ------------------DALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFS 338
Query: 220 YMID-KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGF 278
M D G+ + ++D+ + G ++EA+ + + + D +IW ++G +H
Sbjct: 339 SMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSM-TFKPDPIIWRTLLGACRIHKN 397
Query: 279 VKESLELFTEMQIVGITPD 297
V+ + E +++++ D
Sbjct: 398 VEIAEEAMAKLKVLDPLAD 416
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 165/447 (36%), Positives = 250/447 (55%), Gaps = 42/447 (9%)
Query: 2 LSFSAL--SYL--GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA 57
+SF+AL Y+ G +D + ++ + + WN +I GY +S ++I F +M A
Sbjct: 198 VSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEA 257
Query: 58 GVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYA 117
V P+ T + A G EL + + + G+ S+L ++N+LI MY
Sbjct: 258 NVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMY--------- 308
Query: 118 REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
KCGE ++AR++F+ + E++V+SW+ +I GY Y+
Sbjct: 309 ----------------------CKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYE 346
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL--SLTLPLQTS 235
EAL +FE M K N+VT + +L ACA LGALD G+ + Y IDK L S L TS
Sbjct: 347 EALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAY-IDKNLRNSSNASLWTS 405
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI- 294
LIDMYAKCG I+ A VF + H ++ WNAM+ G AMHG + +L LF+EM G+
Sbjct: 406 LIDMYAKCGCIEAAERVFRSM--HSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLF 463
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAY 353
PD+ITF+G+LSAC GLV +F+S+ + G+ PK +HY CM+D L+RA + EA
Sbjct: 464 RPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAE 523
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413
+ M +EP ++ GSLL+ C HG+++ E V ++L +L+P++ G +V LSN+YA
Sbjct: 524 ILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAG 583
Query: 414 RWDEARTTREAMETRGVKKYPGWSFVE 440
RWD+ R + +G+KK PG + +E
Sbjct: 584 RWDDVARIRTRLNDKGMKKVPGCTSIE 610
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 143/419 (34%), Positives = 227/419 (54%), Gaps = 25/419 (5%)
Query: 1 MLSFSALSYLGNIDYSCKVLS-----HLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML 55
++ F A+S G++ Y+ + H N +F WN++IRGYS S +P S+ LF +ML
Sbjct: 66 LIHFCAVSPSGDLSYALSLFEENQQHHKHN--VFIWNSLIRGYSLSSSPLSSLHLFSRML 123
Query: 56 RAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV 115
GV P+ T+PFL K+ + +HA K + + S+IHMY S G++
Sbjct: 124 YYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMD 183
Query: 116 YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
+AR VFD + +VS+ +++ GY G ++ AR++F+ +P ++VVSW+A+I GYV+ G
Sbjct: 184 FARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGR 243
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
++EA+V F EM++ N+ T+V VL AC H + + G+ + ++ D G L L +
Sbjct: 244 FEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNA 303
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
LIDMY KCG A +F G+E + DV+ WN MIGG + +E+L LF M +
Sbjct: 304 LIDMYCKCGETDIARELFDGIE--EKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVK 361
Query: 296 PDEITFLGLLSACAH-GGLVMEAW---YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTE 351
P+++TFLG+L ACA G L + W Y K+L + + ++D ++ G +
Sbjct: 362 PNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSS---NASLWTSLIDMYAKCGCIEA 418
Query: 352 AYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA-----EIVGKKLVELQPDHDGRYVGL 405
A M AS ++L+G HG + A E+V K L +PD D +VG+
Sbjct: 419 AERVFRSMHSRNLASW-NAMLSGFAMHGHAERALALFSEMVNKGL--FRPD-DITFVGV 473
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 99/257 (38%), Gaps = 59/257 (22%)
Query: 85 VHAQIAKTGYESDLFISNSLIHM--YGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+H+ I KTG + +F+ + LIH GD+ YA +F
Sbjct: 47 IHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLF--------------------- 85
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
E N + NV W++LI GY +L +F M G + N T +
Sbjct: 86 -EENQQHH------KHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLF 138
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS- 261
+C A +G+ + + + L + TS+I MYA G + A +VF +
Sbjct: 139 KSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAV 198
Query: 262 ----------------------------DVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
DV+ WNAMI G G +E++ F EMQ
Sbjct: 199 SFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEAN 258
Query: 294 ITPDEITFLGLLSACAH 310
+ P++ T + +LSAC H
Sbjct: 259 VLPNKSTMVVVLSACGH 275
>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Glycine max]
Length = 782
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/415 (35%), Positives = 228/415 (54%), Gaps = 7/415 (1%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I GY ++ L +M G+ D TY + A+ + VHA +
Sbjct: 242 WNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVL 301
Query: 91 KTGYESD----LFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
+T + L ++N+LI +Y CG +V AR VFD MP K VSWN++L G +
Sbjct: 302 RTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIE 361
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
A +F MP R++++W+ +I G + G +E L +F +M+ G + + + +C+
Sbjct: 362 EANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCS 421
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
LG+LD G+ + +I G +L + +LI MY++CG ++ A VF + D + W
Sbjct: 422 VLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVF--LTMPYVDSVSW 479
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
NAMI LA HG ++++L+ +M I PD ITFL +LSAC+H GLV E ++F ++
Sbjct: 480 NAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRV 539
Query: 327 -RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
G+ P+ +HY+ ++D L RAG +EA MP EP A + +LL GC HG ++L
Sbjct: 540 CYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGI 599
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+L+EL P DG Y+ LSN+YA +WDE R+ M RGVKK PG S++E
Sbjct: 600 QAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIE 654
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/423 (25%), Positives = 190/423 (44%), Gaps = 48/423 (11%)
Query: 4 FSALSYLGNIDYSCKVL--SHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP 61
SA S GNI + ++ + +S +N +I +S S + + ++ LFV+M R G P
Sbjct: 69 LSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVP 128
Query: 62 DHLTYPFLAKASGRLAKRELAVA-VHAQIAKTGYESDLFISNSLIHMYGSCGD------- 113
D T+ + A +A E +H ++ K G S + N+L+ Y SC
Sbjct: 129 DPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSC 188
Query: 114 --IVYAREVFDGMPT--KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDG 169
+ AR++FD P + +W +++ GY + ++ AR++ E M + V+W+A+I G
Sbjct: 189 VLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISG 248
Query: 170 YVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRM----MLRYMIDKG 225
YV G Y+EA + M +G + +E T SV+ A ++ G + GR +LR ++
Sbjct: 249 YVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPS 308
Query: 226 LSLTLPLQTSLIDMYAKCGAIKEALIVF---------------------HGVEKHQS--- 261
L + +LI +Y +CG + EA VF +E+ S
Sbjct: 309 GHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFR 368
Query: 262 -----DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
+L W MI GLA +GF +E L+LF +M++ G+ P + + G +++C+ G +
Sbjct: 369 EMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDN 428
Query: 317 AWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
+ + G ++ SR G V A MP + S +++
Sbjct: 429 GQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSW-NAMIAALA 487
Query: 377 NHG 379
HG
Sbjct: 488 QHG 490
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/375 (24%), Positives = 164/375 (43%), Gaps = 68/375 (18%)
Query: 74 GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
+L+ A AVHA I +G++ I N LI Y +I YAR +FD +P V+
Sbjct: 7 AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66
Query: 134 SMLDGYAKCGEMNMARQVFELMPE--RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
+ML Y+ G + +A Q+F P R+ VS++A+I + D AL +F +M+ +G
Sbjct: 67 TMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGF 126
Query: 192 KANEVTLVSVL------------CACAHLGALDQGRMMLRYMIDKGLSLTL--------- 230
+ T SVL C H G + + +++ +S +
Sbjct: 127 VPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVN 186
Query: 231 ----------------------PLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
P T++I Y + + A + G+ H + + WNA
Sbjct: 187 SCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIA--VAWNA 244
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-- 326
MI G GF +E+ +L M +GI DE T+ ++SA ++ GL ++G+
Sbjct: 245 MISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLF--------NIGRQV 296
Query: 327 -----RGMVPKSEHYA-----CMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
R +V S H+ ++ +R G++ EA +MP++ S ++L+GC+
Sbjct: 297 HAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSW-NAILSGCV 355
Query: 377 NHGKLDLAEIVGKKL 391
N +++ A + +++
Sbjct: 356 NARRIEEANSIFREM 370
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/394 (38%), Positives = 230/394 (58%), Gaps = 8/394 (2%)
Query: 49 SLFVKMLRAG-VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHM 107
SL + L++G + D L +A + + +LA A + + D+F+ N ++
Sbjct: 60 SLHARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRR----DVFLCNVMLAA 115
Query: 108 YGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALI 167
Y + G++ AR VFDGM + VSWN+M+ GYA GE+++AR+VF M +R+ SWS+++
Sbjct: 116 YVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMM 175
Query: 168 DGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS 227
Y K K+AL ++ EMR + T+VSVL AC+ +GAL G + +++ G+
Sbjct: 176 SAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVE 235
Query: 228 LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFT 287
L + L T+LIDMYAKCG I+ ++ VFH + DVL W++MI GLA HGF ++L LF+
Sbjct: 236 LDVKLGTALIDMYAKCGDIENSVRVFHSMP--VKDVLTWSSMIIGLANHGFGHDALSLFS 293
Query: 288 EMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRA 346
M G+ P+E+TF+G+L +C H GLV + +F S+ G+ PK +HY CMVD L R+
Sbjct: 294 RMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRS 353
Query: 347 GQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLS 406
G + EA + I MP EP A + +LL C + +++AE KL L P DG YV LS
Sbjct: 354 GHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLS 413
Query: 407 NVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
N+YA W+ R + +++ PG S +E
Sbjct: 414 NIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIE 447
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 129/319 (40%), Gaps = 64/319 (20%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRG-------------------------------YS 39
G + + +V + + WNT+I G Y+
Sbjct: 120 GEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYT 179
Query: 40 KSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
K + ++ L+ +M A V+PD T + A + + VH + G E D+
Sbjct: 180 KGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVK 239
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
+ +LI MY CGDI + VF MP K ++W+SM+ G A G +
Sbjct: 240 LGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGH------------- 286
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
+AL +F M G + NEVT + VL +C HLG + G+
Sbjct: 287 ------------------DALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFS 328
Query: 220 YM-IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGF 278
M + G++ + ++D+ + G I+EA + + + D +IW A++G ++
Sbjct: 329 SMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDM-PFEPDAVIWRALLGACRIYKN 387
Query: 279 VKESLELFTEMQIVGITPD 297
V+ + E +++++ D
Sbjct: 388 VEVAEEAMAKLRVLDPHAD 406
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/470 (33%), Positives = 255/470 (54%), Gaps = 42/470 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + + K+ + N I W + ++ +++S F +M + G+ P+ P +
Sbjct: 852 GQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSIL 911
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD-------- 122
KA G L+ R +H I K +ESD +I ++LI+MY CG + A VFD
Sbjct: 912 KACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLV 971
Query: 123 -------------------GMPTKMS--------VSWNSMLDGYAKCGEMNMARQVFELM 155
+ KM VSWN+++ G+++ G+ +M +VF LM
Sbjct: 972 VMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLM 1031
Query: 156 P----ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGAL 211
E +VVSW+++I G+V+ E F+EM D G + VT+ S+L AC ++ L
Sbjct: 1032 TANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANL 1091
Query: 212 DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIG 271
G+ + Y + G+ + ++++L+DMYAKCG I EA I+F+ + + + + WN++I
Sbjct: 1092 RHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMP--ERNTVTWNSLIF 1149
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV-MEAWYFFKSLGKRGMV 330
G A HG+ E++ELF +M+ D +TF +L+AC+H G+V + F K K +
Sbjct: 1150 GYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIE 1209
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKK 390
P+ EHYACMVD L RAG+++EAY+ I MP+EP + G+LL C NHG ++LAE+ +
Sbjct: 1210 PRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEH 1269
Query: 391 LVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L EL+P+ G + LSN+YA RW A ++ M+ R K+PG S++E
Sbjct: 1270 LFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/424 (30%), Positives = 208/424 (49%), Gaps = 35/424 (8%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
V L I W I G+ + + K++ F M +G+ P+ T+ + + G +
Sbjct: 271 VFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKD 330
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
H Q+ K G S +F+ ++I MY G
Sbjct: 331 FIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLG-------------------------- 364
Query: 139 YAKCGEMNMARQVFELMPER-NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
EM+ A + F+ M + VSW+ALI GYV ++A+ F M NE T
Sbjct: 365 -----EMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFT 419
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
++ AC+ +L + +I + L + +SLI+ Y +CG+++ A+ VF +
Sbjct: 420 YSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQIS 479
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+DV+ WN++I + +G +++ L +M G P TFL +LSAC+H GLV E
Sbjct: 480 --DADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEG 537
Query: 318 WYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
FFKS+ + + P+ H +CMVD L RAGQ+ A +FI ++ ++PTAS+ LL C
Sbjct: 538 QEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACR 597
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436
+ L +AE V +K+++L+P+ YV LSN+YA RW +A R ME + + K PG
Sbjct: 598 YNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGC 657
Query: 437 SFVE 440
S++E
Sbjct: 658 SWIE 661
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 165/349 (47%), Gaps = 32/349 (9%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + +V +++ N +I Y+++ ++ +F+++ G P+H TY +
Sbjct: 162 GEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTML 221
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
G ++ + +HA + K Y S+ + N+L+ +Y
Sbjct: 222 AVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLY---------------------- 259
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+KCG M A VFE + +RN++SW+A I+G+ + GD+K+AL F MR+ G
Sbjct: 260 ---------SKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESG 310
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ NE T VL +C + GRM +I KG++ + + T++IDMY+ G + EA
Sbjct: 311 IEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAE 370
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
F + + S+V WNA+I G ++ +++++E F M + +E T+ + AC+
Sbjct: 371 KQFKQMGRAASNV-SWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSS 429
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
+ L K + + +++A ++ G + A + Q+
Sbjct: 430 FPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQI 478
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 133/266 (50%), Gaps = 14/266 (5%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ Y +CG+++ AR++F+ +P N+ W L + G Y+EAL F EM+ G + N
Sbjct: 844 LMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPN 903
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
+ L S+L AC HL G M ++ + ++LI MY+KCG +++A VF
Sbjct: 904 QFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFD 963
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
+ D+++ NAM+ G A HGFV E+L+L +MQ G+ P+ +++ L++ + G
Sbjct: 964 WIV--DKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDK 1021
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE---PTASMLGSL 371
F+ + G+ P + ++ + E ++ +M + P++ + SL
Sbjct: 1022 SMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSL 1081
Query: 372 LTGCMN-----HGKLDLAEIVGKKLV 392
L C N HGK EI G +V
Sbjct: 1082 LPACTNVANLRHGK----EIHGYAMV 1103
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 151/323 (46%), Gaps = 34/323 (10%)
Query: 63 HLTYPFLAKA-SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121
H Y F A + GR EL H + K G SD F+ SLI MY
Sbjct: 112 HRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMY------------- 158
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
AKCGE++ A +V++ M + + + LI Y + G + +A
Sbjct: 159 ------------------AKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQ 200
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+F ++ ++G++ N T ++L C + A+ +G+ + +++ + +L+ +Y+
Sbjct: 201 VFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYS 260
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
KCG ++EA IVF + Q +++ W A I G HG K++L+ F+ M+ GI P+E TF
Sbjct: 261 KCGMMEEAEIVFESLR--QRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTF 318
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+L++C ++ F + K+GM ++D S G++ EA + QM
Sbjct: 319 SIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGR 378
Query: 362 EPTASMLGSLLTGCMNHGKLDLA 384
+ +L+ G + + K++ A
Sbjct: 379 AASNVSWNALIAGYVLNEKIEKA 401
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 152/321 (47%), Gaps = 47/321 (14%)
Query: 5 SALSYL----GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
SAL Y+ G+++ +C+V + + + N ++ GY++ ++++ L KM +AGV
Sbjct: 943 SALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVK 1002
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDL---------FISN--------- 102
P+ +++ L ++ + + V + G E D+ F+ N
Sbjct: 1003 PNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDA 1062
Query: 103 -----------------SLIHMYGSCGDIVYAREVFD-----GMPTKMSVSWNSMLDGYA 140
SL+ + ++ + +E+ G+ + V ++++D YA
Sbjct: 1063 FKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVR-SALVDMYA 1121
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
KCG ++ A+ +F +MPERN V+W++LI GY G EA+ +F +M + +K + +T +
Sbjct: 1122 KCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTA 1181
Query: 201 VLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
VL AC+H G ++ G + M +K + L ++D+ + G + EA + +
Sbjct: 1182 VLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPV- 1240
Query: 260 QSDVLIWNAMIGGLAMHGFVK 280
+ D +W A++G HG ++
Sbjct: 1241 EPDKFVWGALLGACRNHGNIE 1261
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
AL +GR + +++ GL+ L+ Y +CG + A +F + +++ W +
Sbjct: 818 ALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIP--NTNIRRWIVL 875
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
G A GF +E+L F+EMQ G+ P++ +L AC H
Sbjct: 876 TGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGH 916
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 80/180 (44%), Gaps = 7/180 (3%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A + G+++ + +V + +S+ + WN++I+ YS++ +P K+I L KM+ G P T
Sbjct: 461 AYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXT 520
Query: 66 Y-PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
+ L+ S +E + + + + + ++ + G G + A + +
Sbjct: 521 FLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKL 580
Query: 125 PTKMSVS-WNSMLDGYAKCGEMNM----ARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
K + S W +L + M A ++ +L P V + L + Y + G + +A
Sbjct: 581 TMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDATV-YVTLSNMYAEVGRWADA 639
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/432 (35%), Positives = 243/432 (56%), Gaps = 36/432 (8%)
Query: 12 NIDYSCKVLSHLSNP-RIFYWNTVIRGYSKSKN-PNKSISLFVKMLRAGVSPDHLTYPFL 69
++ Y+ +V + P + ++NT++RGY++S + ++ + +ML GV+PD T+ L
Sbjct: 70 HLAYARQVFDRIPTPGDVVWYNTLLRGYARSSDGAAEAARVLARMLEEGVAPDTYTFVSL 129
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA E H KTG ++ +LI+MY
Sbjct: 130 LKACAAARAGEEGRQAHGVAVKTGAADHEYVLPTLINMY--------------------- 168
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERN-VVSWSALIDGYVKCGDYKEALVIFEEMRD 188
A+CG+ AR +F +P + VVS++A+I V+ EALV+F EM+
Sbjct: 169 ----------AECGDARSARAMFGRVPNGDCVVSYNAMITAAVRSSRPGEALVLFREMQA 218
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G K VT+ SVL ACA LGAL+ GR + Y+ GL + + T+LIDMY KCG++++
Sbjct: 219 KGLKPTSVTVTSVLSACALLGALELGRWIHEYVRKAGLDSLVKVNTALIDMYGKCGSLED 278
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A+ VF G+E D W+ MI A H + +E++ LF EM+ GI PD +TFLG+L AC
Sbjct: 279 AIDVFQGMESR--DRQAWSVMIVAYANHSYGREAISLFEEMKKQGIRPDAVTFLGVLYAC 336
Query: 309 AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
+H G+V E +F S+ + G+VP +HY C+ D L+R+GQ+ +AY+FI ++P++PTA +
Sbjct: 337 SHSGMVSEGLQYFDSMREYGIVPGIKHYGCVTDLLARSGQLEKAYKFIDELPIQPTAILW 396
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+LL+ C +HG +DL + V ++++EL H YV SN+ A +W+E R+ M +
Sbjct: 397 RTLLSACGSHGAVDLGKRVFERILELDDTHGSDYVIFSNLCANTGKWEEMNRVRKLMNEK 456
Query: 429 GVKKYPGWSFVE 440
GV K PG S +E
Sbjct: 457 GVVKVPGCSSIE 468
>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/471 (33%), Positives = 263/471 (55%), Gaps = 43/471 (9%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L I+ + ++ + + WNT+I GY K++ +K+I +F +M +
Sbjct: 45 LSGYVRLKRIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNM---- 100
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+++ + A + + E A ++ K D+ +++ G + AR+VFD
Sbjct: 101 VSWNAVIAALVQCGRVEEARRRFDEMPK----RDVISWTTMVMGLARSGRVDEARKVFDR 156
Query: 124 MPTKMSVSWNSMLDGYAKC-------------------------------GEMNMARQVF 152
MP + VSWN+M+ GYAK GE+ AR+VF
Sbjct: 157 MPERNVVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVF 216
Query: 153 ELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDVGSKANEVTLVSVLCACAHLGAL 211
MPE+NVVSW+ +I GYV+ G+ + AL +F EM +D G++ NE T V+VL AC+ + L
Sbjct: 217 NEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGL 276
Query: 212 DQGRMMLRYMIDKGLSLTLP-LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
+G+ + +I K + + ++L++MY+KCG + A +F V Q D+++WN MI
Sbjct: 277 GEGQQ-VHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMI 335
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
A HG E++ELF +MQ +G P++++++ LLSAC+H GLV E +F LG+ +
Sbjct: 336 AAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDNSI 395
Query: 331 P-KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
+ +H+AC+VD RAG++ EAY+FI Q+ + ++S+ G LL GC HG L++ ++ K
Sbjct: 396 QLREDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHGDLEIGQLAAK 455
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+L + P++ G Y+ LSN+YA ++W EA R M+ +G+KK PG S++E
Sbjct: 456 ELEKEDPENAGTYLLLSNIYASGRKWREASRVRLKMKEKGLKKQPGCSWIE 506
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 124/276 (44%), Gaps = 66/276 (23%)
Query: 94 YESDLFISNSLIHMYGSCGDIVYAREVFDG------------------------------ 123
+E D+ ++I Y CG IV AR +FD
Sbjct: 2 HERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLF 61
Query: 124 --MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
MP K VSWN+M+DGY K E++ A +VFE M ERN+VSW+A+I V+CG +EA
Sbjct: 62 EVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEEARR 121
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-------------------- 221
F+EM K + ++ +++ A G +D+ R + M
Sbjct: 122 RFDEM----PKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNMR 177
Query: 222 IDKGLSL-------TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLA 274
+D+ L L ++I + + G + A VF+ E + +V+ W MI G
Sbjct: 178 LDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFN--EMPEKNVVSWTTMITGYV 235
Query: 275 MHGFVKESLELFTEM-QIVGITPDEITFLGLLSACA 309
G + +L++F EM + G P+E TF+ +L AC+
Sbjct: 236 QEGESESALKVFVEMIKDGGARPNEGTFVNVLGACS 271
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 119/239 (49%), Gaps = 18/239 (7%)
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQG 214
M ER+VV+W+A+I GY+KCG +A +F+ V + + VT ++L L +++
Sbjct: 1 MHERDVVTWTAVISGYIKCGLIVDARRLFDR---VDAIKDVVTWTAMLSGYVRLKRIEEA 57
Query: 215 RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLA 274
+ M K + ++ID Y K + +A+ VF + H+ +++ WNA+I L
Sbjct: 58 ERLFEVMPVK----NVVSWNTMIDGYGKNREVDKAIEVFERM--HERNMVSWNAVIAALV 111
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSE 334
G V+E+ F EM D I++ ++ A G V EA F + +R +V
Sbjct: 112 QCGRVEEARRRFDEMP----KRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVS--- 164
Query: 335 HYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
+ MV ++ ++ EA++ +MP E S +++TG + +G+L A V ++ E
Sbjct: 165 -WNAMVTGYAKNMRLDEAFDLFERMP-ERNLSSWNTMITGFIQNGELAWARKVFNEMPE 221
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 133/279 (47%), Gaps = 23/279 (8%)
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE-RNVVSWSALIDGYVKCGDYKEALVI 182
M + V+W +++ GY KCG + AR++F+ + ++VV+W+A++ GYV+ +EA +
Sbjct: 1 MHERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERL 60
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
FE M N V+ +++ +D+ + M ++ + ++I +
Sbjct: 61 FEVM----PVKNVVSWNTMIDGYGKNREVDKAIEVFERMHER----NMVSWNAVIAALVQ 112
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG ++EA F + K DV+ W M+ GLA G V E+ ++F M + +++
Sbjct: 113 CGRVEEARRRFDEMPKR--DVISWTTMVMGLARSGRVDEARKVFDRMPERNV----VSWN 166
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+++ A + EA+ F+ + +R + + M+ + G++ A + +MP E
Sbjct: 167 AMVTGYAKNMRLDEAFDLFERMPERNL----SSWNTMITGFIQNGELAWARKVFNEMP-E 221
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR 401
+++TG + G+ +E K VE+ D R
Sbjct: 222 KNVVSWTTMITGYVQEGE---SESALKVFVEMIKDGGAR 257
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/438 (32%), Positives = 250/438 (57%), Gaps = 2/438 (0%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S + LG I + K+ + + WNT++ +++ ++++ + + + G+ +
Sbjct: 133 LSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNG 192
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
++ + +L + L VH QI G+ S++ +S+S++ Y CG + AR++FD
Sbjct: 193 FSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDE 252
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + ++W +M+ GYAK G+M A ++F MPE+N VSW+ALI GY + G +AL +F
Sbjct: 253 MSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELF 312
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
+M + ++ T S LCACA + +L G+ + Y++ + ++LIDMY+KC
Sbjct: 313 TKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKC 372
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G++ VF + ++ DV++WN +I LA HG +E++++ +M G PD+ITF+
Sbjct: 373 GSLGIGRKVF-DLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVV 431
Query: 304 LLSACAHGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+L+AC+H GLV + FF+S+ G+VP EHYAC++D L RAG E + + +MP +
Sbjct: 432 ILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYK 491
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P + +LL C HG ++L ++L+EL+P YV LS++YA+ RW+ + R
Sbjct: 492 PDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVR 551
Query: 423 EAMETRGVKKYPGWSFVE 440
+ M R VKK S++E
Sbjct: 552 QLMNERQVKKERAISWLE 569
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 161/341 (47%), Gaps = 32/341 (9%)
Query: 40 KSKNPNKSISLFVKMLRAGVSPDHLTYP-FLAKASGRLAKRELAVAVHAQIAKTGYESD- 97
K N+++S + R G+ D T L + A RE VH + TG +
Sbjct: 36 KKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALRE-GKRVHLHLKLTGLKRPG 94
Query: 98 LFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE 157
F+SN LI+MY CG V AR+VFD M + SWN+ML GYAK G + AR++F+ MPE
Sbjct: 95 TFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPE 154
Query: 158 RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMM 217
++VVSW+ ++ + +CG + EAL + E R +G + N + VL C L + R +
Sbjct: 155 KDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQV 214
Query: 218 LRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG---------------------- 255
++ G + L +S++D Y KCG + +A +F
Sbjct: 215 HGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDM 274
Query: 256 -------VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
VE + + + W A+I G A +G ++LELFT+M + + PD+ TF L AC
Sbjct: 275 KSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCAC 334
Query: 309 AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQV 349
A + L + P + + ++D S+ G +
Sbjct: 335 ASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSL 375
>gi|326516644|dbj|BAJ92477.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518576|dbj|BAJ88317.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 867
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 239/460 (51%), Gaps = 42/460 (9%)
Query: 21 SHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE 80
S + P + WNTV+ G ++ +++++ +ML G+ PD T L K+
Sbjct: 279 SEAAEPTLATWNTVLSGCARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLG 338
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
VH + G D + +L+ MY CG + A+ VFDG+ + +WNS++ G+A
Sbjct: 339 HGTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHA 398
Query: 141 KCGEMNMARQVFELMPER---------------------------------------NVV 161
G + A ++ E M NVV
Sbjct: 399 NAGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSAGVAPNVV 458
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
SW++LI G GDY+++ F EM+ G + + VT++ +L ACA L L +G+ + +
Sbjct: 459 SWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKELHCFA 518
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
+ + + + T+LIDMYAK G++ A VF V+ +++ NAM+ GLA+HG E
Sbjct: 519 LRRAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQG--KNLVCCNAMLTGLAVHGQAHE 576
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMV 340
+ LF +M G+ PD ITF LL+AC GLV EAW + + K G+ P +EH+ACMV
Sbjct: 577 AAALFHDMWRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTAEHHACMV 636
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400
D L+R G + EA FI + P EP AS G+LLTGC HG LDLAE + L +L+P +
Sbjct: 637 DLLARRGYLDEAMAFIERSPAEPGASSWGALLTGCAIHGNLDLAESAARHLFKLEPHNSA 696
Query: 401 RYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
Y+ + ++Y + +DEA + + AM+ RGV PGWS+ +
Sbjct: 697 NYLAMMSLYEQHQMFDEAESLKYAMKARGVDARPGWSWTQ 736
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 163/358 (45%), Gaps = 15/358 (4%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN + +++ + + +I+ F +M GV+ D A GR +R AVHA
Sbjct: 147 WNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYACARALHACGRAGRRLEGRAVHAHAL 206
Query: 91 KTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
+ G ++ + L MY D+ A V V+WN+++ + G ++ A
Sbjct: 207 RVGLVDAHPLVPGFLAGMYAEGADVAAATTVLLRTAGAGVVAWNAVIACCVRLGLVDDAL 266
Query: 150 QVFELM---------PERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
++ E M E + +W+ ++ G + G +EAL + M + G + T+ S
Sbjct: 267 ELAERMARDAETSEAAEPTLATWNTVLSGCARHGRDREALAVVRRMLEQGILPDAATVSS 326
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
+L + A+ G+L G + + + GLS T+L+DMYAKCG + A VF G+E
Sbjct: 327 LLKSVANSGSLGHGTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLE--H 384
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
++ WN+++ G A G +LEL M+ I P+ T+ GL++ A GL +A
Sbjct: 385 RNLATWNSLVAGHANAGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLL 444
Query: 321 FKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTASMLGSLLTGC 375
+ + G+ P + ++ G +++ F +M ++P+ + LL C
Sbjct: 445 LRQIKSAGVAPNVVSWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRAC 502
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 107/239 (44%), Gaps = 11/239 (4%)
Query: 158 RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMM 217
++ V W+ + + GD+ A+ F EMR G A+ L AC G +GR +
Sbjct: 142 KDAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYACARALHACGRAGRRLEGRAV 201
Query: 218 LRYMIDKGLSLTLPLQTS-LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ + GL PL L MYA+ + A V + + V+ WNA+I
Sbjct: 202 HAHALRVGLVDAHPLVPGFLAGMYAEGADVAAATTVL--LRTAGAGVVAWNAVIACCVRL 259
Query: 277 GFVKESLELFTEMQIVGIT-----PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
G V ++LEL M T P T+ +LS CA G EA + + ++G++P
Sbjct: 260 GLVDDALELAERMARDAETSEAAEPTLATWNTVLSGCARHGRDREALAVVRRMLEQGILP 319
Query: 332 KSEHYACMVDALSRAGQV---TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ + ++ +++ +G + TE + F + L P A +L+ G+LD+A+ V
Sbjct: 320 DAATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRV 378
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 146/363 (40%), Positives = 222/363 (61%), Gaps = 4/363 (1%)
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
R LA++VHA++ K + S L +S L+ Y + A ++FD MP + +V++N+++ G
Sbjct: 121 RRLALSVHARVLKL-FPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISG 179
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
+ G + A +VF+ MP + VSW+ALIDG VK G + EA+ F M G + + VTL
Sbjct: 180 LMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTL 239
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
++V+ ACA +GAL G + R ++ +GL + + SLIDMYA+CG ++ A VF G+ K
Sbjct: 240 IAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRK 299
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
V+ WN+MI G A +G +++E F M+ G PD +TF G+L+AC+HGGL E
Sbjct: 300 RT--VVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLTDEGL 357
Query: 319 YFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
++ + + G+ + EHY C+VD L R+GQ+ EA + MP+ P +LG+LL GC
Sbjct: 358 RYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVVTTMPMRPNEVVLGALLAGCRM 417
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
HG + +AE + + L+EL P D YV LSN+YA +WD A R M+ RG++K PG+S
Sbjct: 418 HGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGLRKRPGYS 477
Query: 438 FVE 440
VE
Sbjct: 478 AVE 480
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 133/290 (45%), Gaps = 39/290 (13%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L G + + +V + P W +I G K+ +++I F ML GV PD+
Sbjct: 177 ISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDY 236
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T + A + L + VH + + G E ++ I+NSLI MY CG + AR+VF G
Sbjct: 237 VTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSG 296
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + VSWNSM+ G+A G +C D E F
Sbjct: 297 MRKRTVVSWNSMIVGFAANG----------------------------RCADAVEH---F 325
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY----MIDKGLSLTLPLQTSLIDM 239
E MR G K + VT VL AC+H G D+G LRY + G++ + ++D+
Sbjct: 326 EAMRREGFKPDAVTFTGVLTACSHGGLTDEG---LRYYDLMRAEYGIAARMEHYGCVVDL 382
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
+ G ++EA+ V + ++V++ A++ G MHG V + +L +
Sbjct: 383 LGRSGQLEEAMRVVTTMPMRPNEVVL-GALLAGCRMHGDVGMAEQLMQHL 431
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 38/237 (16%)
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA--NEVTLVSVLCACAHLGALDQGRM 216
+V SW++ I K GD A M + N+VTL++VL ACA + R
Sbjct: 63 DVASWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARR 122
Query: 217 MLRYMIDKGLSL---TLPLQTSLIDMY-------------------------------AK 242
+ + + L L L L T L+ Y +
Sbjct: 123 LALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGLMR 182
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
G + A VF G+ D + W A+I G +G E+++ F M + G+ PD +T +
Sbjct: 183 NGLVAAAFEVFDGMPA--PDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLI 240
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
++SACA G + + + + ++G+ ++D +R GQV A + M
Sbjct: 241 AVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGM 297
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/429 (35%), Positives = 242/429 (56%), Gaps = 6/429 (1%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y+ +V+ + F W VIRGY+ +++I+++ M + ++P T+ L KA G
Sbjct: 101 YARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACG 160
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
+ L HAQ + +++ N++I MY C I AR+VFD MP + +SW
Sbjct: 161 TMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTE 220
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ YA+ G M A ++FE +P +++V+W+A++ G+ + +EAL F+ M G +A+
Sbjct: 221 LIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRAD 280
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT--LPLQTSLIDMYAKCGAIKEALIV 252
EVT+ + ACA LGA ++ G S + + + ++LIDMY+KCG ++EA+ V
Sbjct: 281 EVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNV 340
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI-VGITPDEITFLGLLSACAHG 311
F + + +V +++MI GLA HG +E+L LF M I P+ +TF+G L AC+H
Sbjct: 341 F--MSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHS 398
Query: 312 GLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GLV + F S+ + G+ P +HY CMVD L R G++ EA E I M +EP + G+
Sbjct: 399 GLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGA 458
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL C H ++AEI + L EL+PD G Y+ LSNVYA W R+ ++ +G+
Sbjct: 459 LLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGL 518
Query: 431 KKYPGWSFV 439
KK P S+V
Sbjct: 519 KKTPAVSWV 527
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 135/308 (43%), Gaps = 40/308 (12%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
+A + +GN++ + ++ L + W ++ G++++ P +++ F +M ++G+ D
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYE-SD-LFISNSLIHMYGSCGDIVYAREVF 121
+T A +L + A K+GY SD + I ++LI MY CG++ A VF
Sbjct: 282 VTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVF 341
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
M K +++SM+ G A G A +F M + +
Sbjct: 342 MSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEI-------------------- 381
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMY 240
K N VT V L AC+H G +DQGR + M G+ T T ++D+
Sbjct: 382 ----------KPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLL 431
Query: 241 AKCGAIKEA--LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
+ G ++EA LI VE H +W A++G +H E E+ E + + PD
Sbjct: 432 GRTGRLQEALELIKTMSVEPHGG---VWGALLGACRIHN-NPEIAEIAAE-HLFELEPDI 486
Query: 299 ITFLGLLS 306
I LLS
Sbjct: 487 IGNYILLS 494
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/366 (41%), Positives = 219/366 (59%), Gaps = 4/366 (1%)
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
A+ E + V ++ + + DL NS+I CG + A +F+ MP + VSW +M+
Sbjct: 232 ARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMV 291
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK-ANE 195
DGYAK GE+++AR +F+ MPER+V+S +A++ GYV+ G EAL F +M +
Sbjct: 292 DGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDN 351
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
TL+ L A A LG D+G + Y+ D G SL+ L +LIDMYAKCG+I AL VF
Sbjct: 352 ATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFED 411
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
++ D WNA+IGGLA+HG + + ELF EM+ + + PD+ITF+G+L+AC H GLV
Sbjct: 412 IDDKSIDH--WNAIIGGLAIHGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVK 469
Query: 316 EAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
E F+ + + V PK +HY CMVD L RAG V EA +F+ +MP+EP + +LL+
Sbjct: 470 EGLMCFELMRRVHKVEPKLQHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSA 529
Query: 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
C NH + E V K L+ + + YV LSN+YA F W++ R M+ R +KK P
Sbjct: 530 CRNHENFTIGEPVAKHLISVDSYNPSSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIP 589
Query: 435 GWSFVE 440
G S +E
Sbjct: 590 GCSQIE 595
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 196/398 (49%), Gaps = 30/398 (7%)
Query: 22 HLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKREL 81
H F WN +I+ +S ++P ++ +F ML GV D ++ + KA RL +
Sbjct: 81 HRKQDNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKE 140
Query: 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
+ +H + + SD+F+ N L+ +Y CG + AR++FD M + SVS+NSM+DGY K
Sbjct: 141 GMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVK 200
Query: 142 CGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGD-YKEALVIFEEMRDVGSKANEVTL 198
G + AR++F++MP ++N++SW+++I GY + + + A +FEEM K + ++
Sbjct: 201 HGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEM----PKRDLISW 256
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
S++ C G ++ + M + + +++D YAK G I A +F E
Sbjct: 257 NSMIDGCVKCGKMENAHHLFNQMPKRDVV----SWANMVDGYAKLGEIDIARGLFD--EM 310
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLSACAHGGLVMEA 317
+ DV+ NAM+ G +G + E+L F +M + PD T L LSA A G E
Sbjct: 311 PERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEG 370
Query: 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA---YEFICQMPLEPTASMLGSLLTG 374
+ G + ++D ++ G + A +E I ++ +++G L
Sbjct: 371 VALHCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAI- 429
Query: 375 CMNHGKLDLAEIVGKKLVELQ-----PDHDGRYVGLSN 407
HG L E+ + +E++ PD D ++G+ N
Sbjct: 430 ---HG---LGEVAFELFMEMEKLFVKPD-DITFIGVLN 460
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/431 (35%), Positives = 241/431 (55%), Gaps = 7/431 (1%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
+D + +L +P ++ + I +S +++L +ML G+ P T
Sbjct: 82 RLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLP 141
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A LA L A+HA K D +++ +L+ MY GD AR +FD MP V
Sbjct: 142 ACHGLA---LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVP 198
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
+ML YAK G ++ AR++F+ MP ++ + W+A+IDGY + G EAL +F M G
Sbjct: 199 VTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGV 258
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+EV ++ L A A LG + GR + Y+ + + + L + T+LIDMY KCG++++A+
Sbjct: 259 DPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAV 318
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF+ + D+++WNAMI G AMHG +++LE+F++++ G+ P +ITF+GLL+AC+H
Sbjct: 319 SVFNSIG--DKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSH 376
Query: 311 GGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E FF+S+ + +VPK EHY CMVD L RAG + EA+ + M + P M
Sbjct: 377 SGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWV 436
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL C H + L + + LV + G Y+ LSN+YA W+E R M+ G
Sbjct: 437 SLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASG 496
Query: 430 VKKYPGWSFVE 440
++K PG S +E
Sbjct: 497 IQKEPGCSAIE 507
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 125/271 (46%), Gaps = 38/271 (14%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G +D + ++ + + WN +I GY++ PN+++ LF MLR+GV PD +
Sbjct: 209 MGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILA 268
Query: 70 AKASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A +L E +H+ + + + + + +LI MY CG + A VF+ + K
Sbjct: 269 LSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKD 328
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
V WN+M++GYA GD ++AL +F ++R
Sbjct: 329 IVVWNAMINGYA-------------------------------MHGDSRKALEMFSQLRS 357
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIK 247
G ++T + +L AC+H G +D+G + M ++ + + ++D+ + G I+
Sbjct: 358 QGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIE 417
Query: 248 EALIVFHGVEKHQ--SDVLIWNAMIGGLAMH 276
EA FH V+ D ++W +++ +H
Sbjct: 418 EA---FHLVQSMTIAPDTVMWVSLLAACRLH 445
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/431 (35%), Positives = 241/431 (55%), Gaps = 7/431 (1%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
+D + +L +P ++ + I +S +++L +ML G+ P T
Sbjct: 81 RLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLP 140
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A LA L A+HA K D +++ +L+ MY GD AR +FD MP V
Sbjct: 141 ACHGLA---LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVP 197
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
+ML YAK G ++ AR++F+ MP ++ + W+A+IDGY + G EAL +F M G
Sbjct: 198 VTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGV 257
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+EV ++ L A A LG + GR + Y+ + + + L + T+LIDMY KCG++++A+
Sbjct: 258 DPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAV 317
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF+ + D+++WNAMI G AMHG +++LE+F++++ G+ P +ITF+GLL+AC+H
Sbjct: 318 SVFNSIG--DKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSH 375
Query: 311 GGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E FF+S+ + +VPK EHY CMVD L RAG + EA+ + M + P M
Sbjct: 376 SGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWV 435
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL C H + L + + LV + G Y+ LSN+YA W+E R M+ G
Sbjct: 436 SLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASG 495
Query: 430 VKKYPGWSFVE 440
++K PG S +E
Sbjct: 496 IQKEPGCSAIE 506
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 125/271 (46%), Gaps = 38/271 (14%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G +D + ++ + + WN +I GY++ PN+++ LF MLR+GV PD +
Sbjct: 208 MGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILA 267
Query: 70 AKASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A +L E +H+ + + + + + +LI MY CG + A VF+ + K
Sbjct: 268 LSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKD 327
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
V WN+M++GYA GD ++AL +F ++R
Sbjct: 328 IVVWNAMINGYA-------------------------------MHGDSRKALEMFSQLRS 356
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIK 247
G ++T + +L AC+H G +D+G + M ++ + + ++D+ + G I+
Sbjct: 357 QGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIE 416
Query: 248 EALIVFHGVEKHQ--SDVLIWNAMIGGLAMH 276
EA FH V+ D ++W +++ +H
Sbjct: 417 EA---FHLVQSMTIAPDTVMWVSLLAACRLH 444
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 165/462 (35%), Positives = 235/462 (50%), Gaps = 73/462 (15%)
Query: 44 PNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAV--AVHAQIAKTGYESDLFIS 101
P +++ F M R D TY FL KA L+ +A AVH+ + K G D F+
Sbjct: 114 PRDALAAFSAMPRR----DSFTYSFLIKA---LSAAGVAPVRAVHSHVVKLGSVEDTFVG 166
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPT-------------------------------KMSV 130
N+LI Y G AR+VFD MP K +V
Sbjct: 167 NALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTV 226
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE------ 184
SWN++LDGY K GE+ A ++F+ MPERNVVSWS ++ GY K GD + A VIF+
Sbjct: 227 SWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKN 286
Query: 185 -------------------------EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
+M++ + + +VS+L ACA G+L G+ + R
Sbjct: 287 LVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHR 346
Query: 220 YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
Y+ + L + + +LIDM+ KCG + A VF E Q D + WN++IGG AMHG
Sbjct: 347 YVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFD-TETVQKDSVSWNSIIGGFAMHGHG 405
Query: 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYAC 338
++LELF +M+ G PD +T + +LSAC H G V E F ++ + G++P+ EHY C
Sbjct: 406 DKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGC 465
Query: 339 MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398
M+D L R G + EA + I MP EP + GSLL+ C H ++ AEI +L +LQP +
Sbjct: 466 MIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSN 525
Query: 399 DGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
G Y LSN+YA +W + R M+ G +K G S+VE
Sbjct: 526 AGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVE 567
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 117/272 (43%), Gaps = 34/272 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+++ + + + + + W ++ ++ +++ LF +M A V D +
Sbjct: 270 GDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSIL 329
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT-KMS 129
A L +H + K + N+LI M+ CG + A VFD K S
Sbjct: 330 AACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDS 389
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSWNS++ G+A G GD +AL +F +M+
Sbjct: 390 VSWNSIIGGFAMHGH-----------------------------GD--KALELFAQMKQQ 418
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G + VT+++VL AC H+G +D+GR M D G+ + +ID+ + G IKE
Sbjct: 419 GFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKE 478
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
A+ + + ++V IW +++ +H V+
Sbjct: 479 AVDLIKSMPWEPNEV-IWGSLLSACRLHKNVE 509
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 149/438 (34%), Positives = 244/438 (55%), Gaps = 34/438 (7%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SA S G + + ++ + + I WN +I Y+++ + +K +F +M P+
Sbjct: 169 ISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNE 228
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T + +L E+ + + S++ +S +++ MY
Sbjct: 229 ITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMY--------------- 273
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
KCG ++ R VF+ M R+VV+WSA+I GY + G EAL +F
Sbjct: 274 ----------------VKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELF 317
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
E M+ K N+VTLVSVL ACA LG+++ G + Y+ +GL + + ++L+ MY+KC
Sbjct: 318 ENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKC 377
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G I +A +F + Q D + WN+MI GLA++GF ++++ L+ M+ + + P+ ITF+G
Sbjct: 378 GNIIKARQIFDKLP--QRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVG 435
Query: 304 LLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
L++AC H G V FF+S+ + P EH+AC+VD R+G++ +AYEFIC+M +E
Sbjct: 436 LMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVE 495
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P + G+LL+ H ++LAE+ GKKL+EL+PD+ G YV LSN+YA RW EA R
Sbjct: 496 PNVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVR 555
Query: 423 EAMETRGVKKYPGWSFVE 440
+ M+ + V+K +S+VE
Sbjct: 556 KLMKDKRVQKAAAYSWVE 573
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 213/394 (54%), Gaps = 4/394 (1%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
I Y+ +V + +P + I YS+ N+++ FV M + V T P + K+
Sbjct: 46 IQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKS 105
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
L ++ VH+ + + G+ S +F N+LI+ Y D+ A +FDG+ K ++++
Sbjct: 106 CASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAY 165
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
N ++ Y++ GE+ AR++F+ M +R++VSW+A+I Y + GDY + +IF+ M+D +
Sbjct: 166 NCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCE 225
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
NE+TL +VL CA LG L+ G + + +K L + + T++++MY KCGA+ + +V
Sbjct: 226 PNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLV 285
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F + + DV+ W+AMI G A +G E+LELF M+ I P+++T + +LSACA G
Sbjct: 286 FDHMARR--DVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLG 343
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
V + RG++ + ++ S+ G + +A + ++P + ++
Sbjct: 344 SVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIM 403
Query: 373 TGCMNHGKLDLAEIVGK-KLVELQPDHDGRYVGL 405
+N D + + K +E++P+ + +VGL
Sbjct: 404 GLAINGFAEDAIALYNRMKEIEVKPN-NITFVGL 436
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/417 (36%), Positives = 239/417 (57%), Gaps = 38/417 (9%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ W +I YS+ ++++SLFV+MLR+G P+ T+ + + + L +H+
Sbjct: 124 VVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHS 183
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
I K YE+ +++ +SL LD YAK G+++
Sbjct: 184 HIIKLNYEAHVYVGSSL-------------------------------LDMYAKDGKIHE 212
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
AR +F+ +PER+VVS +A+I GY + G +EAL +F ++ G ++N VT SVL A +
Sbjct: 213 ARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSG 272
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
L ALD G+ + +++ + + LQ SLIDMY+KCG + A +F + H+ V+ WN
Sbjct: 273 LAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTL--HERTVISWN 330
Query: 268 AMIGGLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLSACAHGGLV---MEAWYFFKS 323
AM+ G + HG +E LELF M + PD +T L +LS C+HGGL M+ +Y S
Sbjct: 331 AMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTS 390
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
GK + P S+HY C+VD L RAG+V A+EF+ +MP EP+A++ G LL C H LD+
Sbjct: 391 -GKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDI 449
Query: 384 AEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
E VG +L++++P++ G YV LSN+YA RW++ R+ R M + V K PG S++E
Sbjct: 450 GEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIE 506
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 134/262 (51%), Gaps = 22/262 (8%)
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
Y KC + AR VF++MPERNVVSW+A+I Y + G +AL +F +M G++ NE T
Sbjct: 103 YVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTF 162
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
+VL +C GR + ++I + + +SL+DMYAK G I EA +F +
Sbjct: 163 ATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLP- 221
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA------HGG 312
+ DV+ A+I G A G +E+LELF +Q G+ + +T+ +L+A + HG
Sbjct: 222 -ERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGK 280
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
V + +S +V ++ ++D S+ G +T A + E T ++L
Sbjct: 281 QVHN--HLLRSEVPSYVVLQNS----LIDMYSKCGNLTYARRIFDTLH-ERTVISWNAML 333
Query: 373 TGCMNHGKLDLAEIVGKKLVEL 394
G HG+ G++++EL
Sbjct: 334 VGYSKHGE-------GREVLEL 348
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
+VL C A+ +G+ + +MI + L+T LI Y KC ++++A VF +
Sbjct: 63 TVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMP-- 120
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
+ +V+ W AMI + G+ ++L LF +M G P+E TF +L++C
Sbjct: 121 ERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSC 169
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 9/179 (5%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLT- 65
S GN+ Y+ ++ L + WN ++ GYSK + + LF M+ V PD +T
Sbjct: 306 SKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTV 365
Query: 66 YPFLAKAS-GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
L+ S G L + + + K + D ++ M G G + A E M
Sbjct: 366 LAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKM 425
Query: 125 PTKMSVS-WNSMLDGYAKCGEMNM----ARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
P + S + W +L + +++ Q+ ++ PE N ++ L + Y G +++
Sbjct: 426 PFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPE-NAGNYVILSNLYASAGRWED 483
>gi|326509061|dbj|BAJ86923.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 866
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 239/460 (51%), Gaps = 42/460 (9%)
Query: 21 SHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE 80
S + P + WNTV+ G ++ +++++ +ML G+ PD T L K+
Sbjct: 278 SEAAEPTLATWNTVLSGCARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLG 337
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
VH + G D + +L+ MY CG + A+ VFDG+ + +WNS++ G+A
Sbjct: 338 HGTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHA 397
Query: 141 KCGEMNMARQVFELMPER---------------------------------------NVV 161
G + A ++ E M NVV
Sbjct: 398 NAGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSAGVAPNVV 457
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
SW++LI G GDY+++ F EM+ G + + VT++ +L ACA L L +G+ + +
Sbjct: 458 SWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKELHCFA 517
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
+ + + + T+LIDMYAK G++ A VF V+ +++ NAM+ GLA+HG E
Sbjct: 518 LRRAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQG--KNLVCCNAMLTGLAVHGQAHE 575
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMV 340
+ LF +M G+ PD ITF LL+AC GLV EAW + + K G+ P +EH+ACMV
Sbjct: 576 AAALFHDMWRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTAEHHACMV 635
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400
D L+R G + EA FI + P EP AS G+LLTGC HG LDLAE + L +L+P +
Sbjct: 636 DLLARRGYLDEAMTFIERSPAEPGASSWGALLTGCAIHGNLDLAESAARHLFKLEPHNSA 695
Query: 401 RYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
Y+ + ++Y + +DEA + + AM+ RGV PGWS+ +
Sbjct: 696 NYLAMMSLYEQHQMFDEAESLKYAMKARGVDARPGWSWTQ 735
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 163/358 (45%), Gaps = 15/358 (4%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN + +++ + + +I+ F +M GV+ D A GR +R AVHA
Sbjct: 146 WNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYACARALHACGRAGRRLEGRAVHAHAL 205
Query: 91 KTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
+ G ++ + L MY D+ A V V+WN+++ + G ++ A
Sbjct: 206 RVGLVDAHPLVPGFLAGMYAEGADVAAATTVLLRTAGAGVVAWNAVIACCVRLGLVDDAL 265
Query: 150 QVFELM---------PERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
++ E M E + +W+ ++ G + G +EAL + M + G + T+ S
Sbjct: 266 ELAERMARDAETSEAAEPTLATWNTVLSGCARHGRDREALAVVRRMLEQGILPDAATVSS 325
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
+L + A+ G+L G + + + GLS T+L+DMYAKCG + A VF G+E
Sbjct: 326 LLKSVANSGSLGHGTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLE--H 383
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
++ WN+++ G A G +LEL M+ I P+ T+ GL++ A GL +A
Sbjct: 384 RNLATWNSLVAGHANAGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLL 443
Query: 321 FKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTASMLGSLLTGC 375
+ + G+ P + ++ G +++ F +M ++P+ + LL C
Sbjct: 444 LRQIKSAGVAPNVVSWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRAC 501
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 107/239 (44%), Gaps = 11/239 (4%)
Query: 158 RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMM 217
++ V W+ + + GD+ A+ F EMR G A+ L AC G +GR +
Sbjct: 141 KDAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYACARALHACGRAGRRLEGRAV 200
Query: 218 LRYMIDKGLSLTLPLQTS-LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ + GL PL L MYA+ + A V + + V+ WNA+I
Sbjct: 201 HAHALRVGLVDAHPLVPGFLAGMYAEGADVAAATTVL--LRTAGAGVVAWNAVIACCVRL 258
Query: 277 GFVKESLELFTEMQIVGIT-----PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
G V ++LEL M T P T+ +LS CA G EA + + ++G++P
Sbjct: 259 GLVDDALELAERMARDAETSEAAEPTLATWNTVLSGCARHGRDREALAVVRRMLEQGILP 318
Query: 332 KSEHYACMVDALSRAGQV---TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ + ++ +++ +G + TE + F + L P A +L+ G+LD+A+ V
Sbjct: 319 DAATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRV 377
>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
Length = 602
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 195/312 (62%), Gaps = 3/312 (0%)
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSW +M+ G + G ++ AR+VF+ MP RN+VSW+++I GYVK + +AL +F+EMR +
Sbjct: 165 VSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRAL 224
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G + N S L AC GAL +GR + R++ G+ + L T+++DMY KCG + EA
Sbjct: 225 GVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEA 284
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF + + WN MIGG A+HG ++LELF +M+ G+ PD++T L +L+ACA
Sbjct: 285 WRVFDSLPARG--LTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342
Query: 310 HGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H G V E + + R G+ PK EHY CMVD RAGQ+ EA + I +MP++P ++L
Sbjct: 343 HAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVL 402
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C HG +DL E +G ++++L PD+ GRYV L+N+ A RWDE R M+ R
Sbjct: 403 GALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDER 462
Query: 429 GVKKYPGWSFVE 440
V K G S +E
Sbjct: 463 NVSKEAGRSVIE 474
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 136/296 (45%), Gaps = 43/296 (14%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL-- 64
L LG +D + +V + + WN++I GY K+ ++ +F +M GV +
Sbjct: 174 LCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVA 233
Query: 65 TYPFLA-KASGRLAK-RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
T +A +G L + RE ++ + ++G E D ++ +++ MY CG + A VFD
Sbjct: 234 TSALVACTGAGALGRGRE----IYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWRVFD 289
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+P + +WN M+ G+A G +C D AL +
Sbjct: 290 SLPARGLTTWNCMIGGFAVHG----------------------------RCDD---ALEL 318
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYA 241
F +M G ++VTL++VL ACAH G + +GR L +++ + G+ ++D++
Sbjct: 319 FHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFG 378
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
+ G + EA V + D+ + A++G +HG V L +++ + PD
Sbjct: 379 RAGQLDEAKKVIDEMPM-DPDLAVLGALLGACKIHGDV--DLGEAIGWRVIDLDPD 431
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + +V L + WN +I G++ + ++ LF +M AGV+PD +T +
Sbjct: 279 GCVDEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVL 338
Query: 71 KASGRLAK-RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A + E ++ +++ G E ++ ++G G + A++V D MP
Sbjct: 339 TACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPD 398
Query: 130 VSWNSMLDGYAKC-GEMNMAR----QVFELMPERN 159
++ L G K G++++ +V +L P+ +
Sbjct: 399 LAVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNS 433
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/433 (35%), Positives = 246/433 (56%), Gaps = 34/433 (7%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG ++ KV +S+ + WN++I G+ + ++ +F M +GVSPD LT L
Sbjct: 218 LGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSL 277
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A A + +VH + + G++ GDI+
Sbjct: 278 ASAIAQCGDICGGRSVHCYMVRRGWD---------------VGDII-------------- 308
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RD 188
+ N+++D YAK ++ A+++F+ MP R+ VSW+ LI GY++ G EA+ +++ M +
Sbjct: 309 -AGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKH 367
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G K + T VSVL A +HLGAL QG M I GL+L + + T +ID+YAKCG + E
Sbjct: 368 EGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDE 427
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A+++F + + WNA+I G+ +HG ++L LF++MQ GI+PD +TF+ LL+AC
Sbjct: 428 AMLLFEQTPRRSTGP--WNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAAC 485
Query: 309 AHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
+H GLV + FF + G+ P ++HYACMVD RAGQ+ +A++FI MP++P +++
Sbjct: 486 SHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAI 545
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
G+LL C HG +++ ++ + L EL P + G YV +SN+YA +WD R +
Sbjct: 546 WGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRR 605
Query: 428 RGVKKYPGWSFVE 440
+ ++K PGWS +E
Sbjct: 606 QNLQKTPGWSSIE 618
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 119/247 (48%), Gaps = 4/247 (1%)
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
+++ Y + G + A + F+ M R+V +W+A++ G + EA+ +F M G
Sbjct: 109 ALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAG 168
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+ VT+ SVL C LG M Y + GL L + ++ID+Y K G ++E VF
Sbjct: 169 DAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVF 228
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313
G+ D++ WN++I G G V ++E+F M+ G++PD +T L L SA A G
Sbjct: 229 DGMSSR--DLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGD 286
Query: 314 VMEAWYFFKSLGKRGM-VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
+ + +RG V +VD ++ ++ A MP+ S +L+
Sbjct: 287 ICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVS-WNTLI 345
Query: 373 TGCMNHG 379
TG M +G
Sbjct: 346 TGYMQNG 352
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 146/363 (40%), Positives = 222/363 (61%), Gaps = 4/363 (1%)
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
R LA++VHA++ K + S L +S L+ Y + A ++FD MP + +V++N+++ G
Sbjct: 32 RRLALSVHARVLKL-FPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISG 90
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
+ G + A +VF+ MP + VSW+ALIDG VK G + EA+ F M G + + VTL
Sbjct: 91 LMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTL 150
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
++V+ ACA +GAL G + R ++ +GL + + SLIDMYA+CG ++ A VF G+ K
Sbjct: 151 IAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRK 210
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
V+ WN+MI G A +G +++E F M+ G PD +TF G+L+AC+HGGL E
Sbjct: 211 RT--VVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLTDEGL 268
Query: 319 YFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
++ + + G+ + EHY C+VD L R+GQ+ EA + MP+ P +LG+LL GC
Sbjct: 269 RYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVVTTMPMRPNEVVLGALLAGCRM 328
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
HG + +AE + + L+EL P D YV LSN+YA +WD A R M+ RG++K PG+S
Sbjct: 329 HGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGLRKRPGYS 388
Query: 438 FVE 440
VE
Sbjct: 389 AVE 391
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 133/290 (45%), Gaps = 39/290 (13%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L G + + +V + P W +I G K+ +++I F ML GV PD+
Sbjct: 88 ISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDY 147
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T + A + L + VH + + G E ++ I+NSLI MY CG + AR+VF G
Sbjct: 148 VTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSG 207
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + VSWNSM+ G+A G +C D E F
Sbjct: 208 MRKRTVVSWNSMIVGFAANG----------------------------RCADAVEH---F 236
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY----MIDKGLSLTLPLQTSLIDM 239
E MR G K + VT VL AC+H G D+G LRY + G++ + ++D+
Sbjct: 237 EAMRREGFKPDAVTFTGVLTACSHGGLTDEG---LRYYDLMRAEYGIAARMEHYGCVVDL 293
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
+ G ++EA+ V + ++V++ A++ G MHG V + +L +
Sbjct: 294 LGRSGQLEEAMRVVTTMPMRPNEVVL-GALLAGCRMHGDVGMAEQLMQHL 342
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 36/200 (18%)
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL---TLPLQTSLIDMY---------- 240
N+VTL++VL ACA + R + + + L L L L T L+ Y
Sbjct: 11 NDVTLLTVLSACADSPSSPLARRLALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLAL 70
Query: 241 ---------------------AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
+ G + A VF G+ D + W A+I G +G
Sbjct: 71 QLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPA--PDKVSWTALIDGCVKNGRH 128
Query: 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACM 339
E+++ F M + G+ PD +T + ++SACA G + + + + ++G+ +
Sbjct: 129 DEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSL 188
Query: 340 VDALSRAGQVTEAYEFICQM 359
+D +R GQV A + M
Sbjct: 189 IDMYARCGQVELARQVFSGM 208
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 149/414 (35%), Positives = 238/414 (57%), Gaps = 11/414 (2%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ WNT+I GY+++ +++ LF + SP H + + A SG + R + A
Sbjct: 245 VVSWNTIITGYAQNGEIDEARQLFDE------SPVHDVFTWTAMVSGYIQNRMVEEA--R 296
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
++ E + N+++ Y + A+E+FD MP + +WN+M+ GYA+CG+++
Sbjct: 297 ELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISE 356
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
A+ +F+ MP+R+ VSW+A+I GY + G EAL +F M G + N + S L CA
Sbjct: 357 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCAD 416
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
+ AL+ G+ + ++ G + +L+ MY KCG+I+EA +F E D++ WN
Sbjct: 417 VVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFK--EMAGKDIVSWN 474
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327
MI G + HGF +E+L F M+ G+ PD+ T + +LSAC+H GLV + +F ++ +
Sbjct: 475 TMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQD 534
Query: 328 -GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
G+ P S+HYACMVD L RAG + EA+ + MP EP A++ G+LL HG +LAE
Sbjct: 535 YGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAET 594
Query: 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
K+ ++P++ G YV LSN+YA RW + R M +GVKK PG+S++E
Sbjct: 595 AADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 648
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 167/346 (48%), Gaps = 32/346 (9%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFLAKASGRL 76
K L + I WN I Y ++ ++++ +F +M R + VS + + +L R
Sbjct: 49 KPLPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYL-----RN 103
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
+ ELA + ++ E DL N +I Y ++ ARE+F+ MP + SWN++L
Sbjct: 104 GEFELARMLFDEMP----ERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTIL 159
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
GYA+ G ++ AR+VF+ MPE+N VSW+AL+ YV+ +EA V+F GS+ N
Sbjct: 160 SGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF------GSREN-W 212
Query: 197 TLVSVLCACAHLGALDQGRMML--RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
LVS C LG + + ++ R D + ++I YA+ G I EA +F
Sbjct: 213 ALVSWNCL---LGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFD 269
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
H DV W AM+ G + V+E+ ELF M +E+++ +L+ G V
Sbjct: 270 ESPVH--DVFTWTAMVSGYIQNRMVEEARELFDRMP----ERNEVSWNAMLAGYVQGERV 323
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
A F + R + + M+ ++ G+++EA +MP
Sbjct: 324 EMAKELFDVMPCRNVST----WNTMITGYAQCGKISEAKNLFDKMP 365
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 150/339 (44%), Gaps = 51/339 (15%)
Query: 89 IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
+ K+G +SD+ N I Y G A VF MP SVS+N+M+ GY + GE +A
Sbjct: 51 LPKSG-DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELA 109
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGSKANEVTLVSVLCACA 206
R +F+ MPER++VSW+ +I GYV+ + +A +FE M RDV S ++L A
Sbjct: 110 RMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCS------WNTILSGYA 163
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG----------- 255
G +D R + M +K +L+ Y + ++EA ++F
Sbjct: 164 QNGCVDDARRVFDRMPEK----NDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNC 219
Query: 256 -----------VEKHQ-------SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
VE Q DV+ WN +I G A +G + E+ +LF E + D
Sbjct: 220 LLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPV----HD 275
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
T+ ++S +V EA F + +R V + M+ + +V A E
Sbjct: 276 VFTWTAMVSGYIQNRMVEEARELFDRMPERNEVS----WNAMLAGYVQGERVEMAKELFD 331
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQP 396
MP S +++TG GK+ A+ + K+ + P
Sbjct: 332 VMPCR-NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP 369
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 7/188 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I+ + + ++ I WNT+I GYS+ +++ F M R G+ PD T +
Sbjct: 453 GSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVL 512
Query: 71 KASGRLAKRELAVA-VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A + H G + ++ + G G + A + MP +
Sbjct: 513 SACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPD 572
Query: 130 VS-WNSMLDGYAKCGEMNMAR----QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ W ++L G +A ++F + PE N + L + Y G + + +
Sbjct: 573 AAIWGTLLGASRVHGNTELAETAADKIFAMEPE-NSGMYVLLSNLYASSGRWGDVGKLRV 631
Query: 185 EMRDVGSK 192
MRD G K
Sbjct: 632 RMRDKGVK 639
>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 579
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 168/502 (33%), Positives = 257/502 (51%), Gaps = 74/502 (14%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+ NI + V + I WN++I YS++ P++ ++L+ +M+ G+ PD T+
Sbjct: 31 INNIIPARNVFEKMPQRSINAWNSMIIAYSRTNYPDEVLNLYYRMISEGIKPDSSTFTVT 90
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA L ++ + Q GY D+F+ +S++++Y G + A+ VFD M +
Sbjct: 91 LKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFDKMVKRDV 150
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNV----------------------------- 160
VSW +M+ G+A+ G A ++ M +
Sbjct: 151 VSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGH 210
Query: 161 ----------VSWSALIDGYVKCGDYKEALVIFE-------------------------- 184
V ++LID Y K G + A +FE
Sbjct: 211 MVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFANKT 270
Query: 185 -----EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
EM++ G K + V+L+S L ACA +G L G+ + +++ K L L T+LIDM
Sbjct: 271 LASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIV-KRLYLDKVSGTALIDM 329
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
YAKCGA+ A +F +E D+++WNAMI +HG E+L LF +M+ ITPD
Sbjct: 330 YAKCGALTFARALFDQIEPR--DLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHA 387
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
TF LLSAC+H GLV E Y+F L K + P +HYACMVD LSRAGQV EAY+ I
Sbjct: 388 TFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEEAYQLIES 447
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
M ++P ++ +LL+GC+NH L + E+V KK++E PD G YV +SN +++ K+WD+A
Sbjct: 448 MHIKPGLAIWVALLSGCLNHKNLLIGEMVAKKILESNPDDLGIYVLVSNFFSMAKKWDDA 507
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R+ M+ G++K PG+S VE
Sbjct: 508 AVFRKIMKNTGMRKVPGYSAVE 529
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 100/388 (25%), Positives = 164/388 (42%), Gaps = 79/388 (20%)
Query: 85 VHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
+HA I TG + +D LI YG +I+ AR VF+ MP + +WNSM+ Y++
Sbjct: 4 IHALILTTGLFFNDANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRTN 63
Query: 144 EMNMARQVFELM------PERNVVS------------------W---------------S 164
+ ++ M P+ + + W S
Sbjct: 64 YPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVS 123
Query: 165 ALIDGYVKCGDYKEALVIFEEM--RDVGS-----------------------------KA 193
++++ Y K G +A ++F++M RDV S +
Sbjct: 124 SVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEG 183
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+ V +V ++ AC LG G + +M+ + +++ LQTSLIDMYAK G ++ A VF
Sbjct: 184 DGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVF 243
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313
G+ V+ W A+I G A +GF ++L EMQ G PD ++ + LSACA G
Sbjct: 244 EGIP--YKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGN 301
Query: 314 VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
+ + KR + K A ++D ++ G +T A Q +EP +L + +
Sbjct: 302 LKVGKSLHGHIVKRLYLDKVSGTA-LIDMYAKCGALTFARALFDQ--IEPRDLILWNAMI 358
Query: 374 ---GCMNHGKLDLAEIVGKKLVELQPDH 398
G G L+ + K + PDH
Sbjct: 359 SSYGIHGDGIEALSLFLKMKETNITPDH 386
>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
Length = 608
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 151/420 (35%), Positives = 231/420 (55%), Gaps = 7/420 (1%)
Query: 26 PR--IFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPDHLTYPFLAKASGRLAKRELA 82
PR + ++ ++ S S +P + L +ML + PDH LA A+GRL L
Sbjct: 63 PRRDLHLYSALLAAVSHSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLG 122
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+HA A + Y +D + +SLI MY CG AR+VFD + K SV W +++ GYA
Sbjct: 123 RQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASN 182
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV-TLVSV 201
G A +F+ MP + +W+ALI G+VK G+Y A+ +F EMR + ++ L +V
Sbjct: 183 GCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATV 242
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
+ A L AL GR + +++ G ++ + +L+DMY+KC I A VF G+
Sbjct: 243 IGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVR-- 300
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
DV+ W ++ G A HG +E L+ M + G+ P+E+TF+GL+ AC+H GLV + F
Sbjct: 301 DVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLF 360
Query: 322 KSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
S+ + GM P +HY C +D LSR+G ++EA + I MP EP + G+LL+ C H
Sbjct: 361 DSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHND 420
Query: 381 LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ V L+EL+P Y+ LSNVYA+ +WD R+ M ++K PG+S+VE
Sbjct: 421 TQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVE 480
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 115/293 (39%), Gaps = 65/293 (22%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYS-------------------------------KSKNPNK 46
KV + W +I GY+ K+ N
Sbjct: 159 KVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTG 218
Query: 47 SISLFVKMLRAGVS-PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLI 105
++ LFV+M R + D + + LA L +H + + G+ S + + N+L+
Sbjct: 219 AMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALV 278
Query: 106 HMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSA 165
MY C DI AREVF+G+ + +SW ++L G A+ G A +VF L
Sbjct: 279 DMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGR---AEEVFAL----------- 324
Query: 166 LIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK- 224
+ M G K NEVT V ++ AC+H G + +GR + M +
Sbjct: 325 -----------------YNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREY 367
Query: 225 GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
G+ + T +D+ ++ G + EA + + ++ D W A++ H
Sbjct: 368 GMKPGVQHYTCYLDLLSRSGYLSEAEKLITTM-PYEPDEATWGALLSACKKHN 419
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 8/199 (4%)
Query: 115 VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
V+AR + +G+ + + ++ YA+ + AR+ F+ P R++ +SAL+
Sbjct: 23 VHARLLKEGL-ADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSS 81
Query: 175 DYKEALVIFEEM-RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
D + L + M D + + L S+ A L +L GR + + S ++
Sbjct: 82 DPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVK 141
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
+SLIDMY KCG ++A VF + S ++W A+I G A +G E+L+LF M G
Sbjct: 142 SSLIDMYCKCGVPQDARKVFDSIGVKNS--VVWTALISGYASNGCTGEALDLFQSMPAHG 199
Query: 294 ITPDEITFLGLLSACAHGG 312
+ T+ L+S G
Sbjct: 200 L----FTWTALISGFVKAG 214
>gi|242042383|ref|XP_002468586.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
gi|241922440|gb|EER95584.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
Length = 581
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 163/444 (36%), Positives = 248/444 (55%), Gaps = 14/444 (3%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNK-SISLFVKMLRAGV 59
+LSF A + Y+ ++L+H P +N + S P + + L ML +
Sbjct: 48 LLSFLARDPDSHFPYASRLLAHHPAPHPALFNPLF-----SALPTRHAARLLALMLSLPL 102
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
PDH T+P + + L L +HA + K G+ + N+L+ Y + A
Sbjct: 103 HPDHFTFPRILPGAQPL---HLVAQLHALLLKLGFHAHTQSLNALLAAYLANARPDLASR 159
Query: 120 VFDGMPTKM--SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
VF G VSW +M+ G K G ++ AR++F+ MPERN+VSW+A++ GYVK G +
Sbjct: 160 VFRGGGGDALDVVSWTTMVGGLVKLGRVDDARELFDGMPERNLVSWNAMMSGYVKTGRFL 219
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
+AL +F+EMR G N + + AC GAL +GR + R++ G+ + L T+++
Sbjct: 220 DALEVFDEMRARGVDGNAFVAATAVVACTGAGALARGREVHRWVERSGIEMDDKLATAVV 279
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
DMY KCG ++EA VF + + WN MIGG A+HG +++L LF M+ G+ PD
Sbjct: 280 DMYCKCGCVEEAWRVFEALPA--RGLTSWNCMIGGFAVHGRGEDALNLFGLMEREGVAPD 337
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFI 356
++T + +L+ACAH G+V E ++F + +R G+VPK EHY CMVD RAGQ+ EA + I
Sbjct: 338 DVTLVNVLTACAHAGMVSEGRHYFNYISQRYGIVPKMEHYGCMVDLYGRAGQLEEAKKVI 397
Query: 357 CQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWD 416
MP+EP +LG+L HG +DL E +G +++EL P + GRYV L+N+ A RW+
Sbjct: 398 QDMPMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWE 457
Query: 417 EARTTREAMETRGVKKYPGWSFVE 440
+ R M+ R V K G S +E
Sbjct: 458 DVARVRRLMDERNVSKEAGRSVIE 481
>gi|357131180|ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Brachypodium distachyon]
Length = 474
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 145/410 (35%), Positives = 241/410 (58%), Gaps = 3/410 (0%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W+ +++ YS P ++++LF R ++ D + F +A LA +H +
Sbjct: 63 WHALLKAYSHGPFPQEALNLFRDAHR-NMADDTYAFMFSLRACAGLAWPWTGAQLHGLVI 121
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ G+E ++ SLI+ Y CG +V AR FD MP K VSWN M+ G+A GE+ AR
Sbjct: 122 RKGFEFHAYVHTSLINTYVVCGCLVDARMAFDEMPVKNVVSWNVMITGFAGRGEIEYARL 181
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+FE MP RNVVSW+ LIDGY + EA+ + M G E+T+++V+ A + +G
Sbjct: 182 LFERMPSRNVVSWTGLIDGYTRSCHSVEAVALLRRMMAEGISPTEITVLAVVPAISDIGR 241
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
+ G + Y GL L + + SLID+YAK G+I+ +L VFHG+ ++ +++ W ++I
Sbjct: 242 ILMGETLHGYCEKNGLVLDIRVGNSLIDLYAKIGSIQSSLKVFHGM-LNRRNLVSWTSII 300
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG-KRGM 329
G AMHG E++ELF EM+ GI P+ +TFL +L+AC+HGGLV + FFKS+ + +
Sbjct: 301 SGFAMHGLSTEAVELFAEMRRSGIRPNRVTFLSVLNACSHGGLVEQGVEFFKSMVYEYNI 360
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P+ +H+ C++D L RAG++ EA + I +P+E + + +LL C +G++++ + K
Sbjct: 361 NPEIKHFGCIIDMLGRAGRLCEAEQVIGGLPMEVNSIVWRTLLACCSKYGEVEMGKRAMK 420
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
K++ + + G +V +SN+ R+ +A +R+ ++ R K PG + V
Sbjct: 421 KILHTERESGGDFVVVSNMLTELGRFSDAERSRKLLDERNAVKVPGLALV 470
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 127/272 (46%), Gaps = 34/272 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+Y+ + + + + W +I GY++S + ++++L +M+ G+SP +T +
Sbjct: 174 GEIEYARLLFERMPSRNVVSWTGLIDGYTRSCHSVEAVALLRRMMAEGISPTEITVLAVV 233
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS- 129
A + + + +H K G D+ + NSLI +Y G I + +VF GM + +
Sbjct: 234 PAISDIGRILMGETLHGYCEKNGLVLDIRVGNSLIDLYAKIGSIQSSLKVFHGMLNRRNL 293
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSW S++ G+A G EA+ +F EMR
Sbjct: 294 VSWTSIISGFAMHGLST-------------------------------EAVELFAEMRRS 322
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKE 248
G + N VT +SVL AC+H G ++QG + M+ + ++ + +IDM + G + E
Sbjct: 323 GIRPNRVTFLSVLNACSHGGLVEQGVEFFKSMVYEYNINPEIKHFGCIIDMLGRAGRLCE 382
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
A V G+ + + ++W ++ + +G V+
Sbjct: 383 AEQVIGGLPM-EVNSIVWRTLLACCSKYGEVE 413
>gi|87240913|gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 497
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 155/415 (37%), Positives = 233/415 (56%), Gaps = 27/415 (6%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE---LAVAVHA 87
W + I + K+ N K+ S F++ML A V P+H+T L A + A+H
Sbjct: 55 WTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAALHT 114
Query: 88 QIAKTGYE-SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
K G+ +D+ + +LI MY CG + YAR VFD M + VSWN+M+DGY K G+++
Sbjct: 115 HAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVD 174
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
A ++F+ +P +NVVSW+ +I G+VK Y+EAL F EM+ G + VT+++++ ACA
Sbjct: 175 DALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACA 234
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
+LGAL G + R ++ K + + SLIDMYA+CG I+ A VF G+ Q +++ W
Sbjct: 235 NLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMS--QRNLVSW 292
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
N++I G A++G ++L F C+H GL+ E F + +
Sbjct: 293 NSIIVGFAVNGLADKALSFF--------------------PCSHAGLIDEGLKIFADIKR 332
Query: 327 -RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
P+ EHY C+VD SRAG++ EA++ I +MP+ P +LGSLL C G ++LAE
Sbjct: 333 DHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELAE 392
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
V K VEL P D YV SN+YA +WD A R M+ RG++K +S +E
Sbjct: 393 KVMKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLAFSSIE 447
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 23/233 (9%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D + K+ L + W VI G+ K + +++ F +M AGV PD +T +
Sbjct: 171 GDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAII 230
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L L + VH + K + ++ + NSLI MY CG I AR+VFDGM + V
Sbjct: 231 SACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLV 290
Query: 131 SWNSMLDGYAKCGEMNMARQVFE-----LMPE------------RN---VVSWSALIDGY 170
SWNS++ G+A G + A F L+ E RN + + L+D Y
Sbjct: 291 SWNSIIVGFAVNGLADKALSFFPCSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLY 350
Query: 171 VKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
+ G KEA + ++M + NEV L S+L AC G ++ +++Y ++
Sbjct: 351 SRAGRLKEAWDVIKKMPMM---PNEVVLGSLLAACRTQGDVELAEKVMKYQVE 400
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 113/237 (47%), Gaps = 42/237 (17%)
Query: 156 PERN-VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH---LGAL 211
P N VSW++ I + K ++ +A F +M + + N +TL+++L ACAH ++
Sbjct: 47 PNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSI 106
Query: 212 DQGRMMLRYMIDKGLSLT-LPLQTSLIDMYAKCGAIKEALIVFH--GVEKHQSDVLIWNA 268
G + + G ++ + + T+LIDMYAKCG + A +VF GV +++ WN
Sbjct: 107 TFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVR----NLVSWNT 162
Query: 269 MIGG--------------------------LAMHGFVK-----ESLELFTEMQIVGITPD 297
MI G + + GFVK E+LE F EMQ+ G+ PD
Sbjct: 163 MIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPD 222
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
+T + ++SACA+ G + + + + K+ + ++D +R G + A +
Sbjct: 223 FVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQ 279
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 152/412 (36%), Positives = 237/412 (57%), Gaps = 34/412 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN++I + ++ LF M+ +GV PD LT LA A + A +VH +
Sbjct: 237 WNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVR 296
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ G++ GDI+ + N+M+D YAK +++ A++
Sbjct: 297 RRGWD---------------VGDII---------------AGNAMVDMYAKMSKIDAAQK 326
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD-VGSKANEVTLVSVLCACAHLG 209
VF+ +P+R+VVSW+ LI GY++ G EA+ I+ +M + G K + T VSVL A ++LG
Sbjct: 327 VFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLG 386
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
L QG M I GL+L + + T LID+YAKCG + EA+ +F + + + WNA+
Sbjct: 387 GLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGP--WNAI 444
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RG 328
I GL +HG ++L LF++MQ I PD +TF+ LL+AC+H GLV + FF + G
Sbjct: 445 IAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYG 504
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
+VP ++HY CMVD L RAGQ+ EA+EFI MP++P +++ G+LL C HG +++ ++
Sbjct: 505 IVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVAS 564
Query: 389 KKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ L EL P++ G YV +SN+YA +WD R + + ++K PGWS +E
Sbjct: 565 QNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSME 616
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 133/299 (44%), Gaps = 36/299 (12%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPF 68
+ ID + KV +L + + WNT+I GY ++ N++I ++ M G+ P T+
Sbjct: 318 MSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVS 377
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+ A L + + +HA KTG D++++ LI +Y CG +V A +F+ MP +
Sbjct: 378 VLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRS 437
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
+ WN A+I G G +AL +F +M+
Sbjct: 438 TGPWN-------------------------------AIIAGLGVHGHGAKALSLFSQMQQ 466
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIK 247
K + VT VS+L AC+H G +DQGR M G+ T ++DM + G +
Sbjct: 467 EEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLD 526
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
EA + + D +W A++G +HG V+ + + + P+ + + L+S
Sbjct: 527 EAFEFIQSMPI-KPDSAVWGALLGACRIHGNVE--MGKVASQNLFELDPENVGYYVLMS 582
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 167/375 (44%), Gaps = 47/375 (12%)
Query: 9 YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG--VSPDHLTY 66
+L N+D HL P + N++I +S++ P ++ L ++L + PD T+
Sbjct: 19 HLRNLD------PHLQVPPLLLVNSLIAAFSRAALPRLALPLLRRLLAGAHPLRPDSFTF 72
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
P L +A+ A A +HA + G ++F S SL+H
Sbjct: 73 PPLVRAAPGPAS---AAQLHACALRLGLLHPNVFASGSLVH------------------- 110
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
Y + G + A +VF+ MPER+V +W+A++ G + +A+ +
Sbjct: 111 ------------AYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGR 158
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M G + VTL SVL C LG +M Y + GLS L + +LID+Y K G
Sbjct: 159 MVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGM 218
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
+ EA VF G+ D++ WN++I G V ++ELF M G+ PD +T + L
Sbjct: 219 LTEAHWVFGGMA--LRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLA 276
Query: 306 SACAHGGLVMEAWYFFKSLGKRGM-VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
SA A G + A + +RG V MVD ++ ++ A + +P
Sbjct: 277 SAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDV 336
Query: 365 ASMLGSLLTGCMNHG 379
S +L+TG M +G
Sbjct: 337 VSW-NTLITGYMQNG 350
>gi|297846398|ref|XP_002891080.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336922|gb|EFH67339.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 562
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 152/446 (34%), Positives = 243/446 (54%), Gaps = 38/446 (8%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L A+S G++ ++ K+ H+ P WN +IRG++ S +P+ + S + ML+ S
Sbjct: 41 LLERCAISPFGDLSFAVKIFRHIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQRSSS 100
Query: 61 P-----DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV 115
D LT F KA R V +H QI++ G+ +D + +L
Sbjct: 101 SALCRVDALTCSFTLKACARALCSSAMVQIHCQISRRGFSADALLCTTL----------- 149
Query: 116 YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
LD Y+K G++ A ++F+ M R+V SW+ALI G V
Sbjct: 150 --------------------LDAYSKNGDLISALKLFDEMSVRDVASWNALIAGLVAGNR 189
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR-YMIDKGLSLTLPLQT 234
EAL +++ M G + +EVT+V+ L AC+HLG + +G +L Y+ D+ L + +
Sbjct: 190 ASEALELYKRMEMEGIRRSEVTVVAALGACSHLGDVKEGEKILHGYIKDEKLDHNVIVSN 249
Query: 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
++IDMY+KCG + +A VF +S V+ WN MI G ++HG +LE+F +++ GI
Sbjct: 250 AVIDMYSKCGFVDKAFQVFEQFTGKKS-VVTWNTMITGFSVHGEAHRALEIFEKLEHNGI 308
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
PD++++L L+AC H GLV F ++ G+ P +HY C+VD LSRAG++ EA++
Sbjct: 309 KPDDVSYLAALTACRHTGLVEYGISIFNNMACNGVEPNMKHYGCVVDLLSRAGRLREAHD 368
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414
IC M + P + SLL H +++AEI +K+ E+ ++DG +V LSNVYA R
Sbjct: 369 IICSMSMVPDPVLWQSLLGASEIHNNVEMAEIASRKIKEMGVNNDGDFVLLSNVYAAQGR 428
Query: 415 WDEARTTREAMETRGVKKYPGWSFVE 440
W + R+ ME++ VKK PG S++E
Sbjct: 429 WKDVGLVRDDMESKQVKKVPGISYIE 454
>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 637
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/437 (35%), Positives = 244/437 (55%), Gaps = 34/437 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A S G ++ + +V + + WNT+I Y++++ ++++ +F +M G
Sbjct: 106 NAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEF 165
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T + A G +H KT + +L++ +L
Sbjct: 166 TISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTAL-------------------- 205
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
LD YAKCG +N A QVFE M +++ V+WS+++ GYV+ +Y+EAL+++
Sbjct: 206 -----------LDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYR 254
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+ + + N+ TL SV+CAC++L AL +G+ M + G + + +S +DMYAKCG
Sbjct: 255 RAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCG 314
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+++E+ I+F V+ + ++ +WN +I G A H KE + LF +MQ G+ P+E+TF L
Sbjct: 315 SLRESYIIFSEVQ--EKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSL 372
Query: 305 LSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LS C H GLV E FFK + G+ P HY+CMVD L RAG ++EAYE I +P EP
Sbjct: 373 LSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEP 432
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
TAS+ GSLL C L+LAE+ KKL EL+P++ G +V LSN+YA K+W+E +R+
Sbjct: 433 TASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRK 492
Query: 424 AMETRGVKKYPGWSFVE 440
+ VKK G S+++
Sbjct: 493 LLRDCDVKKVRGQSWID 509
>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
Length = 619
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 157/417 (37%), Positives = 238/417 (57%), Gaps = 39/417 (9%)
Query: 29 FYWNTVIRGYSKSKNPN---KSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAV 85
F NT+IR ++ S P+ ++ S F MLR+ P+ T+PFL KA + V
Sbjct: 109 FLANTLIRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKACAAFPG--VGVQA 166
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE- 144
HA K G+ +D ++SN+LIHMY G GE
Sbjct: 167 HAAALKFGFTTDQYVSNTLIHMYSCFG------------------------------GEF 196
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
+ AR VF+ M + + V+WSA+I GYV+ G +A+ +F EM+ G + +EVT++ VL A
Sbjct: 197 LGDARNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAA 256
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
A LGAL+ R + R++ +G+ ++ L +LID AKCG + A+ VF G++ + ++
Sbjct: 257 AADLGALELARWVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMK--ERTIV 314
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
W ++I LAM G KE++ +F EM+ G+ PD++ F+G+L+AC+H G+V E + +F+S+
Sbjct: 315 SWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESM 374
Query: 325 G-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
G+ PK EHY CMVD RAG V A EF+ +MP++P + +L+ C HG+L+L
Sbjct: 375 RMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLEL 434
Query: 384 AEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
E + + L+ P H+ YV LSNVYA+ +RW E R M RG+KK PG S VE
Sbjct: 435 GETITRNLLNEYPAHEANYVMLSNVYALTRRWKEKSEIRREMSKRGIKKVPGCSLVE 491
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 33/261 (12%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
V ++ W+ +I GY +S + ++ LF +M +GV PD +T + A+ L
Sbjct: 202 NVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLG 261
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
ELA V + K G + + N+LI CGD+ A VF GM + VSW S++D
Sbjct: 262 ALELARWVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVID 321
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
A G KEA+ +FEEM+ G + ++V
Sbjct: 322 ALAMEGR-------------------------------GKEAVAVFEEMKTAGVRPDDVA 350
Query: 198 LVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
+ VL AC+H G +D+G M + G+ + ++DM+ + G ++ A+ H +
Sbjct: 351 FIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKM 410
Query: 257 EKHQSDVLIWNAMIGGLAMHG 277
+ + +IW ++ HG
Sbjct: 411 PM-KPNPIIWRTLVAACRAHG 430
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 77/202 (38%), Gaps = 25/202 (12%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
AL+ G++D + V + I W +VI + +++++F +M AGV PD +
Sbjct: 291 ALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVA 350
Query: 66 YPFLAKAS----------GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV 115
+ + A G +A + +I G ++ M+G G +
Sbjct: 351 FIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYG---------CMVDMFGRAGMVE 401
Query: 116 YAREVFDGMPTKMS-VSWNSMLDGYAKCGEMNM----ARQVFELMPERNVVSWSALIDGY 170
A E MP K + + W +++ G + + R + P ++ L + Y
Sbjct: 402 RAMEFVHKMPMKPNPIIWRTLVAACRAHGRLELGETITRNLLNEYPAHE-ANYVMLSNVY 460
Query: 171 VKCGDYKEALVIFEEMRDVGSK 192
+KE I EM G K
Sbjct: 461 ALTRRWKEKSEIRREMSKRGIK 482
>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
Length = 602
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 195/312 (62%), Gaps = 3/312 (0%)
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSW +M+ G + G ++ AR+VF+ MP RN+VSW+++I GYVK + +AL +F+EMR +
Sbjct: 165 VSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRAL 224
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G + N S L AC GAL +GR + R++ G+ + L T+++DMY KCG + EA
Sbjct: 225 GVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEA 284
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF + + WN MIGG A+HG ++LELF +M+ G+ PD++T L +L+ACA
Sbjct: 285 WGVFDSLPARG--LTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342
Query: 310 HGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H G V E + + R G+ PK EHY CMVD RAGQ+ EA + I +MP++P ++L
Sbjct: 343 HAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVL 402
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C HG +DL E +G ++++L PD+ GRYV L+N+ A RWDE R M+ R
Sbjct: 403 GALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDER 462
Query: 429 GVKKYPGWSFVE 440
V K G S +E
Sbjct: 463 NVSKEAGRSVIE 474
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 136/296 (45%), Gaps = 43/296 (14%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL-- 64
L LG +D + +V + + WN++I GY K+ ++ +F +M GV +
Sbjct: 174 LCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVA 233
Query: 65 TYPFLA-KASGRLAK-RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
T +A +G L + RE ++ + ++G E D ++ +++ MY CG + A VFD
Sbjct: 234 TSALVACTGAGALGRGRE----IYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWGVFD 289
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+P + +WN M+ G+A G +C D AL +
Sbjct: 290 SLPARGLTTWNCMIGGFAVHG----------------------------RCDD---ALEL 318
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYA 241
F +M G ++VTL++VL ACAH G + +GR L +++ + G+ ++D++
Sbjct: 319 FHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFG 378
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
+ G + EA V + D+ + A++G +HG V L +++ + PD
Sbjct: 379 RAGQLDEAKKVIDEMPM-DPDLAVLGALLGACKIHGDV--DLGEAIGWRVIDLDPD 431
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 6/155 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + V L + WN +I G++ + ++ LF +M AGV+PD +T +
Sbjct: 279 GCVDEAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVL 338
Query: 71 KASGRLAK-RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A + E ++ +++ G E ++ ++G G + A++V D MP
Sbjct: 339 TACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPD 398
Query: 130 VSWNSMLDGYAKC-GEMNMAR----QVFELMPERN 159
++ L G K G++++ +V +L P+ +
Sbjct: 399 LAVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNS 433
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 150/431 (34%), Positives = 236/431 (54%), Gaps = 34/431 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D + + S+ W+ +I GY++S + +K++ LF M +G+ P T+ +
Sbjct: 258 GSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVI 317
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L VH + K G+ES +++ +L+ MY
Sbjct: 318 NACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMY---------------------- 355
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
AKC + AR+ F+ + E ++V W+++I GYV+ G+ ++AL ++ M G
Sbjct: 356 ---------AKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEG 406
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
NE+T+ SVL AC+ L AL+QG+ + + G L +P+ ++L MYAKCG +K+
Sbjct: 407 ILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGT 466
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+VF + DV+ WNAMI GL+ +G KE+LELF EMQ+ G PD +TF+ +LSAC+H
Sbjct: 467 LVFRRMPAR--DVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSH 524
Query: 311 GGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV W +F+ + + GM P+ EHYACMVD LSRAG++ EA EF ++ +
Sbjct: 525 MGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWR 584
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+L C N+ +L G+KL+EL YV LS++Y+ RW++ R M+ RG
Sbjct: 585 IILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRG 644
Query: 430 VKKYPGWSFVE 440
V K PG S++E
Sbjct: 645 VSKEPGCSWIE 655
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 161/370 (43%), Gaps = 38/370 (10%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKS--ISLFVKMLRAGVSPDHLTYPFLAKASGRL 76
V + N + WN +I GYS+ S + LF +M +P+ T+ + A+ L
Sbjct: 62 VFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTL 121
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
HA K D+F+ +SL++MY
Sbjct: 122 VDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMY---------------------------- 153
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
K G AR+VF+ MPERN VSW+ +I GY EAL +F MR NE
Sbjct: 154 ---CKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEF 210
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
SVL A ++ G+ + + GL + + +L+ MYAKCG++ +AL F
Sbjct: 211 VFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETS 270
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
S + W+AMI G A G ++L+LF+ M + GI P E TF+G+++AC+ G E
Sbjct: 271 SDKNS--ITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWE 328
Query: 317 AWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA---YEFICQMPLEPTASMLGSLLT 373
L K G + +VD ++ + +A ++++ + + SM+G +
Sbjct: 329 GKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQ 388
Query: 374 GCMNHGKLDL 383
N L L
Sbjct: 389 NGENEDALSL 398
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 105/403 (26%), Positives = 175/403 (43%), Gaps = 81/403 (20%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
KV + W T+I GY+ K +++ LF M R + + + A L
Sbjct: 164 KVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSA---LT 220
Query: 78 KREL---AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
EL +H K G S + + N+L+ MY
Sbjct: 221 LPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMY-------------------------- 254
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
AKCG ++ A Q FE ++N ++WSA+I GY + GD +AL +F M G + +
Sbjct: 255 -----AKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPS 309
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
E T V V+ AC+ LGA +G+ + Y++ G + + T+L+DMYAKC +I +A F
Sbjct: 310 EFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFD 369
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC------ 308
++ + D+++W +MIGG +G +++L L+ M++ GI P+E+T +L AC
Sbjct: 370 YLQ--EPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAAL 427
Query: 309 -----------------------------AHGGLVMEAWYFFKSLGKRGMVPKSEHYACM 339
A G + + F+ + R ++ + M
Sbjct: 428 EQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVIS----WNAM 483
Query: 340 VDALSRAGQVTEAYEFICQMPLE---PTASMLGSLLTGCMNHG 379
+ LS+ G EA E +M LE P ++L+ C + G
Sbjct: 484 ISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMG 526
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 4/177 (2%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV--IFEEMRDVG 190
NS+++ YAKC + A+ VFE + ++VVSW+ +I+GY + G + V +F+ MR
Sbjct: 44 NSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAEN 103
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ N T V A + L GR+ I + + +SL++MY K G EA
Sbjct: 104 TAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEAR 163
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
VF + + S + W MI G A E+L LF M+ +E F +LSA
Sbjct: 164 KVFDTMPERNS--VSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSA 218
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
+ + L H +L +G+ L I K S + + SL+++YAKC ++EA VF +
Sbjct: 8 SFFTALLQYTHNRSLQKGKA-LHAQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFERI 66
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKES--LELFTEMQIVGITPDEITFLGLLSACA 309
+ DV+ WN +I G + HG S +ELF M+ P+ TF G+ +A +
Sbjct: 67 Q--NKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAAS 119
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 163/449 (36%), Positives = 247/449 (55%), Gaps = 44/449 (9%)
Query: 2 LSFSAL--SYL--GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA 57
+SF+AL Y+ G++D + ++ + + WN +I GY +S ++++ F +M A
Sbjct: 194 VSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEA 253
Query: 58 GVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYA 117
VSP+ T + A G L EL + + + G+ +L + N+L+ MY
Sbjct: 254 DVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMY--------- 304
Query: 118 REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
+KCGE+ AR++F+ M +++V+ W+ +I GY Y+
Sbjct: 305 ----------------------SKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYE 342
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT-----LPL 232
EALV+FE M N+VT ++VL ACA LGALD G+ + Y IDK L T + L
Sbjct: 343 EALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAY-IDKNLKGTGNVNNVSL 401
Query: 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292
TS+I MYAKCG ++ A VF + + WNAMI GLAM+G + +L LF EM
Sbjct: 402 WTSIIVMYAKCGCVEVAEQVFRSMGSRS--LASWNAMISGLAMNGHAERALGLFEEMINE 459
Query: 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTE 351
G PD+ITF+G+LSAC G V +F S+ K G+ PK +HY CM+D L+R+G+ E
Sbjct: 460 GFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDE 519
Query: 352 AYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI 411
A + M +EP ++ GSLL C HG+++ E V ++L EL+P++ G YV LSN+YA
Sbjct: 520 AKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAG 579
Query: 412 FKRWDEARTTREAMETRGVKKYPGWSFVE 440
RWD+ R + +G+KK PG + +E
Sbjct: 580 AGRWDDVAKIRTKLNDKGMKKVPGCTSIE 608
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/413 (33%), Positives = 227/413 (54%), Gaps = 12/413 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLS--HLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG 58
++ F ALS ++ Y+ + H P IF WNT+IR +S + P S+ LF +ML +G
Sbjct: 63 LIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSG 122
Query: 59 VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
+ P+ T+P L K+ + A +HA K + SLIHMY G++ +AR
Sbjct: 123 LYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHAR 182
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
VFD + +VS+ +++ GY G ++ AR++F+ +P ++VVSW+A+I GYV+ G ++E
Sbjct: 183 LVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEE 242
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
AL F M++ N+ T+VSVL AC HL +L+ G+ + ++ D+G L L +L+D
Sbjct: 243 ALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVD 302
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MY+KCG I A +F G+E DV++WN MIGG +E+L LF M +TP++
Sbjct: 303 MYSKCGEIGTARKLFDGME--DKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPND 360
Query: 299 ITFLGLLSACAH-GGLVMEAW---YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
+TFL +L ACA G L + W Y K+L G V + ++ ++ G V A +
Sbjct: 361 VTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQ 420
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDGRYVGL 405
M AS ++++G +G + A + ++++ QPD D +VG+
Sbjct: 421 VFRSMGSRSLASW-NAMISGLAMNGHAERALGLFEEMINEGFQPD-DITFVGV 471
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 115/299 (38%), Gaps = 60/299 (20%)
Query: 85 VHAQIAKTGYESDLFISNSLIHM--YGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+H+ I K+G + LF + LI D+ YA +F + +
Sbjct: 44 IHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQ--------------- 88
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
N+ W+ LI + +L +F +M G N T S+
Sbjct: 89 --------------PPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLF 134
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF--------- 253
+CA A + + + + + L L + TSLI MY++ G ++ A +VF
Sbjct: 135 KSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAV 194
Query: 254 --------HGVEKH------------QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
+ E H DV+ WNAMI G G +E+L FT MQ
Sbjct: 195 SFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEAD 254
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352
++P++ T + +LSAC H + + + RG + +VD S+ G++ A
Sbjct: 255 VSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTA 313
>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 787
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 247/431 (57%), Gaps = 2/431 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG+++ + +VL + W T++ + + N +++SL+ +ML G P+ + +
Sbjct: 325 LGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSV 384
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L +H Q K +++F+S++LI MY C + A+ +F +P K
Sbjct: 385 LGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNI 444
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
V WNS++ GY+ +M A ++F+ MP RNV SW+++I GY + + +AL F M
Sbjct: 445 VCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLAS 504
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G E+T SVL ACA L +L+ G+M+ +I G+ ++ + T+L DMYAK G + +
Sbjct: 505 GQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSS 564
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF+ + K ++DV W AMI GLA +GF +ES+ LF +M GITP+E TFL +L AC+
Sbjct: 565 KRVFYEMPK-RNDV-AWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACS 622
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
H GLV A ++F+ + G+ PK++HY CMVD L+RAG + EA + + ++ + A+
Sbjct: 623 HSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWA 682
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL+ C + ++ E K+L EL D+ YV LSN+YA +W +A R M+
Sbjct: 683 ALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGIN 742
Query: 430 VKKYPGWSFVE 440
+KK G S+V+
Sbjct: 743 LKKDGGCSWVQ 753
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 163/312 (52%), Gaps = 34/312 (10%)
Query: 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQI 89
++ +I G+ ++ P ++ +F +ML GVSP+ +T + KA + +LA+++
Sbjct: 212 FFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLA 271
Query: 90 AKTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
K+ + +L + NSLI +Y GD AR +FD M + VSW ++LD YA+ G++ A
Sbjct: 272 MKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGA 331
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
R+V + MPERN VSW L+ + + G+ KEA+ ++ +M G + N SVL ACA L
Sbjct: 332 RRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASL 391
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
L GR + + S + + ++LIDMY KC + +A ++F+ + Q +++ WN+
Sbjct: 392 QDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP--QKNIVCWNS 449
Query: 269 MIGGLAMHGFVKESLELFTEM-------------------QIV------------GITPD 297
+I G + + + E+ ELF +M Q + G +P
Sbjct: 450 LISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPG 509
Query: 298 EITFLGLLSACA 309
EITF +L ACA
Sbjct: 510 EITFSSVLLACA 521
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 146/325 (44%), Gaps = 35/325 (10%)
Query: 99 FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
F + ++ + GDIV AR +FDGMP + VS+ +M+D K G + A +++ P
Sbjct: 149 FAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLC 208
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD-----Q 213
+V ++A+I G+V K+AL +F EM G NE+TLVSV+ AC G D
Sbjct: 209 SVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIV 268
Query: 214 GRMMLRYMIDKGLS-----LTLPLQ----------------------TSLIDMYAKCGAI 246
G M ++DK L +TL L+ T+L+D+YA+ G +
Sbjct: 269 GLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDL 328
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ A V E + + + W ++ G KE++ L+++M G P+ F +L
Sbjct: 329 EGARRVLD--EMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLG 386
Query: 307 ACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
ACA + K + ++D + Q+ +A +P +
Sbjct: 387 ACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP-QKNIV 445
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKL 391
SL++G N+ K+ AE + KK+
Sbjct: 446 CWNSLISGYSNNSKMVEAEELFKKM 470
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 151/432 (34%), Positives = 244/432 (56%), Gaps = 6/432 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + + ++ + + + WNT++ Y+ N + + LF +M+ G+ DH++ +
Sbjct: 123 GQVTDARRLFDGMPHRDLASWNTLLGAYND--NAVEVLVLFKRMMYEGIGGDHISMVIVF 180
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G++ E VH + K G L +SN+L+ +Y CG++ A+ +F M V
Sbjct: 181 SACGKIGGTEFGKEVHGYVIKVGIRPALSLSNALLGVYTKCGEMDAAQSLFVEMAAMRDV 240
Query: 131 SWNSML-DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+++L +GY G +++AR +F+ M +++VSW+++I YVK K+A+ +F +M +
Sbjct: 241 VSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKMENE 300
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ +E T+VSVL ACA L L GR+ R++I L + T+LIDMYAKCG+++EA
Sbjct: 301 MVEPDETTMVSVLAACASLADLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAKCGSLEEA 360
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
++ F+ ++ DV W I GLA HG ++L LFTEM+ GI P++ TF+ +L AC+
Sbjct: 361 MVTFYKMDSR--DVFTWTTAIEGLANHGHGDKALSLFTEMEKQGIKPNQATFVSVLMACS 418
Query: 310 HGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
GLV E FK + + + PK EH C++D LSRAG + +A EFI MP +
Sbjct: 419 RSGLVKEGCLLFKRMVEAYQIQPKIEHLGCLLDILSRAGLLHQAEEFIKLMPPKEKIIAN 478
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+LL+ CMNH + DL E + L EL ++ LSN YA+ +W E TR M+
Sbjct: 479 KTLLSACMNHLEYDLGEKIANGLTELSSQSHATHILLSNFYALAGQWAEVAKTRRVMKEI 538
Query: 429 GVKKYPGWSFVE 440
++K PG S V+
Sbjct: 539 DIRKVPGISSVD 550
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 172/387 (44%), Gaps = 69/387 (17%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFLAKASGRLAKRELAVAVHAQI 89
WN +IR +S+S P +I ++ ++ V PD TYP + KA R+ VHA +
Sbjct: 41 WNCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTYPAMLKACWRMGSLSKGKEVHAHV 100
Query: 90 AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
KTG +SD+++ N+L+H+YGS G + AR +FDGMP + SWN++L Y
Sbjct: 101 TKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTLLGAY---------- 150
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
N V E LV+F+ M G + +++V V AC +G
Sbjct: 151 -------NDNAV----------------EVLVLFKRMMYEGIGGDHISMVIVFSACGKIG 187
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA----------------LIVF 253
+ G+ + Y+I G+ L L +L+ +Y KCG + A I+F
Sbjct: 188 GTEFGKEVHGYVIKVGIRPALSLSNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTILF 247
Query: 254 HGV--------------EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
+G + D++ WN+MI K+++ELF +M+ + PDE
Sbjct: 248 NGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKMENEMVEPDET 307
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHY--ACMVDALSRAGQVTEAYEFIC 357
T + +L+ACA + + + + P+ + + ++D ++ G + EA
Sbjct: 308 TMVSVLAACASLADLQNGRLAHRFIIQNN--PRQDLFVGTALIDMYAKCGSLEEAMVTFY 365
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLA 384
+M + + + G NHG D A
Sbjct: 366 KMDSRDVFTWT-TAIEGLANHGHGDKA 391
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 110/247 (44%), Gaps = 32/247 (12%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
F+ +G+ID + + +S + WN++I Y K+K+P K+I LF KM V PD
Sbjct: 247 FNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKMENEMVEPDE 306
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + A LA + H I + DLF+ +LI MY CG + A F
Sbjct: 307 TTMVSVLAACASLADLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAKCGSLEEAMVTFYK 366
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M ++ +W + ++G A G GD +AL +F
Sbjct: 367 MDSRDVFTWTTAIEGLANHGH-----------------------------GD--KALSLF 395
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAK 242
EM G K N+ T VSVL AC+ G + +G ++ + M++ + + L+D+ ++
Sbjct: 396 TEMEKQGIKPNQATFVSVLMACSRSGLVKEGCLLFKRMVEAYQIQPKIEHLGCLLDILSR 455
Query: 243 CGAIKEA 249
G + +A
Sbjct: 456 AGLLHQA 462
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 165/503 (32%), Positives = 246/503 (48%), Gaps = 72/503 (14%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S LG I Y+ K+ P +F WN +IR YS++ ++ ++ M GV PD T+P
Sbjct: 99 SNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFP 158
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
++ KA L L+ +H QI K G+ SD+F+ N L+ +Y CG I A+ VFDG+ +
Sbjct: 159 YVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHR 218
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNV-VSWSALID------------------ 168
VSW S++ GYA+ G+ A ++F M V W AL+
Sbjct: 219 TIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIH 278
Query: 169 --------------------GYVKCGDYKEALVIFEEMRDVGS----------------- 191
Y KCG A F++M+
Sbjct: 279 GFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAE 338
Query: 192 --------------KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
K + VT+ S + A A +G+L+ + M Y+ + + TSLI
Sbjct: 339 EAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLI 398
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
DMYAKCG+++ A VF DV++W+AMI G +HG E++ L+ M+ G+ P+
Sbjct: 399 DMYAKCGSVEFARRVFD--RNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPN 456
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
++TF+GLL+AC H GLV E W F + +VP++EHY+C+VD L RAG + EA FI
Sbjct: 457 DVTFIGLLTACNHSGLVKEGWELFHCMKDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIM 516
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
++P+EP S+ G+LL+ C + + L E KL L P + G YV LSN+YA WD
Sbjct: 517 KIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDC 576
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
R M +G+ K G+S +E
Sbjct: 577 VAHVRVLMREKGLNKDLGYSVIE 599
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 132/287 (45%), Gaps = 6/287 (2%)
Query: 113 DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVK 172
D ++ R V G+ +++G + G++ AR++F+ +V W+A+I Y +
Sbjct: 73 DQIHNRLVISGLQHN-GFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSR 131
Query: 173 CGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPL 232
Y++ + ++ MR G + T VL AC L ++ +I G + +
Sbjct: 132 NNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFV 191
Query: 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292
Q L+ +YAKCG I A +VF G+ + ++ W ++I G A +G E+L +F++M+
Sbjct: 192 QNGLVALYAKCGHIGVAKVVFDGL--YHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNN 249
Query: 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352
G+ PD I + +L A + + + K G+ + + ++ G VT A
Sbjct: 250 GVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVA 309
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV--ELQPD 397
F QM M ++++G +G + A + ++ ++PD
Sbjct: 310 KSFFDQMK-TTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPD 355
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 127/315 (40%), Gaps = 80/315 (25%)
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
KR L +H ++ +G + + F+ L++ + G I YAR++FD WN+++
Sbjct: 69 KRHLD-QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIR 127
Query: 138 GYAKCGEMNMARQVFELM---------PE------------------------------- 157
Y++ NM R E+ P+
Sbjct: 128 SYSR---NNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYG 184
Query: 158 --RNVVSWSALIDGYVKCGDYKEALVIFE------------------------------- 184
+V + L+ Y KCG A V+F+
Sbjct: 185 FGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFS 244
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+MR+ G K + + LVS+L A + L+QGR + ++I GL L SL YAKCG
Sbjct: 245 QMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCG 304
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+ A F ++ ++V++WNAMI G A +G +E++ LF M I PD +T
Sbjct: 305 LVTVAKSFFDQMK--TTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSA 362
Query: 305 LSACAH-GGLVMEAW 318
+ A A G L + W
Sbjct: 363 VLASAQVGSLELAQW 377
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 165/462 (35%), Positives = 235/462 (50%), Gaps = 73/462 (15%)
Query: 44 PNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAV--AVHAQIAKTGYESDLFIS 101
P +++ F M R D TY FL KA L+ +A AVH+ + K G D F+
Sbjct: 421 PRDALAAFSAMPRR----DSFTYSFLIKA---LSAAGVAPVRAVHSHVVKLGSVEDTFVG 473
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPT-------------------------------KMSV 130
N+LI Y G AR+VFD MP K +V
Sbjct: 474 NALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTV 533
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE------ 184
SWN++LDGY K GE+ A ++F+ MPERNVVSWS ++ GY K GD + A VIF+
Sbjct: 534 SWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKN 593
Query: 185 -------------------------EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
+M++ + + +VS+L ACA G+L G+ + R
Sbjct: 594 LVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHR 653
Query: 220 YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
Y+ + L + + +LIDM+ KCG + A VF E Q D + WN++IGG AMHG
Sbjct: 654 YVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFD-TETVQKDSVSWNSIIGGFAMHGHG 712
Query: 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYAC 338
++LELF +M+ G PD +T + +LSAC H G V E F ++ + G++P+ EHY C
Sbjct: 713 DKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGC 772
Query: 339 MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398
M+D L R G + EA + I MP EP + GSLL+ C H ++ AEI +L +LQP +
Sbjct: 773 MIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSN 832
Query: 399 DGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
G Y LSN+YA +W + R M+ G +K G S+VE
Sbjct: 833 AGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVE 874
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 117/272 (43%), Gaps = 34/272 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+++ + + + + + W ++ ++ +++ LF +M A V D +
Sbjct: 577 GDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSIL 636
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT-KMS 129
A L +H + K + N+LI M+ CG + A VFD K S
Sbjct: 637 AACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDS 696
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSWNS++ G+A G GD +AL +F +M+
Sbjct: 697 VSWNSIIGGFAMHGH-----------------------------GD--KALELFAQMKQQ 725
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G + VT+++VL AC H+G +D+GR M D G+ + +ID+ + G IKE
Sbjct: 726 GFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKE 785
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
A+ + + ++V IW +++ +H V+
Sbjct: 786 AVDLIKSMPWEPNEV-IWGSLLSACRLHKNVE 816
>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Glycine max]
Length = 628
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 168/510 (32%), Positives = 257/510 (50%), Gaps = 84/510 (16%)
Query: 13 IDYSCKVLSHLS--NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
ID+S +V + + N +F +N +I G+ + P ++++L+ +M G++PD T+P +
Sbjct: 80 IDHSLRVFNFPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVI 139
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+A G + +H + K G E D+F+ ++L++ Y + A VF+ +P + V
Sbjct: 140 RACGDDDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVV 199
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMP---------------------------------- 156
WN+M++G+A+ G A VF M
Sbjct: 200 LWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFV 259
Query: 157 -----ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV---------------------- 189
E VV +ALID Y KC +AL +FE M ++
Sbjct: 260 TKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTL 319
Query: 190 -------GS---KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL--------TLP 231
GS + + VT+ +VL AC HL AL GR + YM+ GL+ +
Sbjct: 320 RLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVL 379
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
L +L+DMYAKCG +++A +VF V + DV WN MI G MHG+ E+L++F+ M
Sbjct: 380 LNNALMDMYAKCGNMRDARMVF--VNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQ 437
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVT 350
+ P+EI+F+GLLSAC+H G+V E F + K G+ P EHY C++D L RAGQ+
Sbjct: 438 AQMVPNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLM 497
Query: 351 EAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410
EAY+ + MP + SLL C H DLAE+ K++EL+PDH G YV +SNVY
Sbjct: 498 EAYDLVLTMPFKADPVGWRSLLAACRLHNDTDLAEVAASKVIELEPDHCGNYVLMSNVYG 557
Query: 411 IFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ R++E R M+ + VKK PG S++E
Sbjct: 558 VVGRYEEVLEWRYTMKQQNVKKRPGCSWIE 587
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 63/113 (55%)
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
T ++ L +CAH L +G+ + +++ + TSLI+MY+KC I +L VF+
Sbjct: 31 TCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFP 90
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
H +V +NA+I G + + +L L+ +M+ +GI PD+ TF ++ AC
Sbjct: 91 THHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACG 143
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 78/176 (44%), Gaps = 7/176 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN+ + V ++ + WN +I GY +++ +F +M +A + P+ +++ L
Sbjct: 392 GNMRDARMVFVNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLL 451
Query: 71 KASGRLAKRELAVAVHAQI-AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A + + +++ +K G + +I M G ++ A ++ MP K
Sbjct: 452 SACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKAD 511
Query: 130 -VSWNSMLDGYAKCGEMNMAR----QVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
V W S+L + ++A +V EL P+ + ++ + + Y G Y+E L
Sbjct: 512 PVGWRSLLAACRLHNDTDLAEVAASKVIELEPD-HCGNYVLMSNVYGVVGRYEEVL 566
>gi|357474431|ref|XP_003607500.1| hypothetical protein MTR_4g078750 [Medicago truncatula]
gi|355508555|gb|AES89697.1| hypothetical protein MTR_4g078750 [Medicago truncatula]
Length = 470
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 161/419 (38%), Positives = 239/419 (57%), Gaps = 18/419 (4%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK 91
N +IR Y+ N NK +F ML VSP+ T+P L K+S + +H Q K
Sbjct: 58 NALIRAYN-VHNHNKVFVIFTNMLANNVSPNTHTFPPLLKSSSAF----VVTPLHCQALK 112
Query: 92 TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQV 151
G SD F+ +L+ +Y IV A++VF+ +P V+ N+M++ + G M A V
Sbjct: 113 RGILSDPFVLTTLLVVYARTNHIVCAQKVFEEVPMFCIVASNAMINAFTMNGNMEGALLV 172
Query: 152 FELMPERNVVSWSALIDGYVKCGDYKEALVIF------EEMRDVGSKANEVTLVSVLCAC 205
FE MP R+VVSW+ +++G+ G++ A+ F +++ D K NE T VSVL +C
Sbjct: 173 FEWMPYRDVVSWTTMVNGFALSGNFGAAIRFFGTMMRHKDVLDCLVKPNEATYVSVLSSC 232
Query: 206 AHL---GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
L GALD GR + Y++ KG+ L + + TSLI++Y K G + + VF + +
Sbjct: 233 TELEGKGALDFGRQVHGYIVVKGVDLGVFVGTSLINLYGKMGCLNYSASVFRVMVVR--E 290
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
V WNAMI LA +G KE+L+LF +M++ G+ P+ ITF+ +L+ACA GG V E F+
Sbjct: 291 VCTWNAMISSLASNGREKEALDLFEKMKLQGLKPNSITFVAVLTACARGGFVSEGLELFE 350
Query: 323 SL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
S+ K +VP EHY C+VD L RAG + EA E I MP P ++LG+ L C HG +
Sbjct: 351 SMSSKFQVVPVMEHYGCVVDLLGRAGHIQEAAEIIRNMPFPPDKTVLGAFLGACRIHGAI 410
Query: 382 DLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+L E + K L +LQ H G+Y+ LS++YA +RW+ A R + G+ K P +S V
Sbjct: 411 ELGEEIAKML-KLQTQHCGQYLLLSSMYAEKERWNHAADLRNEIMEAGIHKIPAFSMVH 468
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 123/293 (41%), Gaps = 46/293 (15%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG------ 58
+A + GN++ + V + + W T++ G++ S N +I F M+R
Sbjct: 158 NAFTMNGNMEGALLVFEWMPYRDVVSWTTMVNGFALSGNFGAAIRFFGTMMRHKDVLDCL 217
Query: 59 VSPDHLTYPFLAKASGRLAKR---ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV 115
V P+ TY + + L + + VH I G + +F+ SLI++YG G +
Sbjct: 218 VKPNEATYVSVLSSCTELEGKGALDFGRQVHGYIVVKGVDLGVFVGTSLINLYGKMGCLN 277
Query: 116 YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
Y+ VF M + +WN+M+ A G
Sbjct: 278 YSASVFRVMVVREVCTWNAMISSLASNGR------------------------------- 306
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT- 234
KEAL +FE+M+ G K N +T V+VL ACA G + +G + M K +P+
Sbjct: 307 EKEALDLFEKMKLQGLKPNSITFVAVLTACARGGFVSEGLELFESMSSK--FQVVPVMEH 364
Query: 235 --SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLEL 285
++D+ + G I+EA + + D + A +G +HG ++ E+
Sbjct: 365 YGCVVDLLGRAGHIQEAAEIIRNM-PFPPDKTVLGAFLGACRIHGAIELGEEI 416
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 153/395 (38%), Positives = 232/395 (58%), Gaps = 7/395 (1%)
Query: 51 FVKMLRAGVSPDHLTYPFLAKASGRL--AKRELAVAVHAQIAKTGYE-SDLFISNSLIHM 107
F M AGV P+H+T+ L G L L +H K G + + + + +++ M
Sbjct: 2 FSGMRLAGVEPNHITFIALLSGWGDLLSGSEALGDLLHGYACKLGLDRAHVMVGTAILGM 61
Query: 108 YGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALI 167
Y G AR VFD M K SV+WN+M+DGY + G+++ A ++F+ MPER+++SW+A+I
Sbjct: 62 YSKRGRFRKARLVFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMI 121
Query: 168 DGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS 227
+G+VK G ++EAL F EM+ G K + V +++ L AC +LGAL G + RY++ +
Sbjct: 122 NGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFK 181
Query: 228 LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFT 287
+ + SLID+Y +CG ++ A VF +EK V+ WN++I G A +G ESL F
Sbjct: 182 NNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRT--VVSWNSVIVGFAANGHAHESLVYFR 239
Query: 288 EMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRA 346
+MQ G P+ +TF G L+AC H GLV E +F+S+ + + P+ EHY C+VD SRA
Sbjct: 240 KMQEEGFKPNAVTFTGALAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSRA 299
Query: 347 GQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD-LAEIVGKKLVELQPDHDGRYVGL 405
G++ +A + + MP++P ++GSLL C G LAE V K L +L YV L
Sbjct: 300 GRLEDALKVVQSMPMKPNEVVIGSLLAACRTQGNNTVLAERVMKHLSDLNVKSHSNYVIL 359
Query: 406 SNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
SN+YA +W+ A R M+ G+KK PG+S +E
Sbjct: 360 SNMYAADGKWEGASKMRRKMKGLGLKKEPGFSSIE 394
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 122/259 (47%), Gaps = 38/259 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + K+ + + W +I G+ K ++++ F +M +GV PD++
Sbjct: 97 GQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAAL 156
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L + +H + +++++ +SNSLI +Y CG + +AR+VFD M + V
Sbjct: 157 AACTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVV 216
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS++ G+A G + E+LV F +M++ G
Sbjct: 217 SWNSVIVGFAANGHAH-------------------------------ESLVYFRKMQEEG 245
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI----DKGLSLTLPLQTSLIDMYAKCGAI 246
K N VT L AC H+G +++G LRY D +S + L+D+Y++ G +
Sbjct: 246 FKPNAVTFTGALAACNHVGLVEEG---LRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRL 302
Query: 247 KEALIVFHGVEKHQSDVLI 265
++AL V + ++V+I
Sbjct: 303 EDALKVVQSMPMKPNEVVI 321
>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 615
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 158/438 (36%), Positives = 241/438 (55%), Gaps = 41/438 (9%)
Query: 11 GNIDYSCKVLSHLSNP-RIFYWNTVIRGYSK------SKNP-NKSISLFVKMLRAGVSPD 62
+ Y+ +V + P + ++NT++RGY++ ++ P ++ +FV+ML GV+PD
Sbjct: 82 AQLSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPD 141
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
T+ L KA E H K G ++ +LI+MY
Sbjct: 142 TYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMY-------------- 187
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
A+CG+ AR +F + VVS++A+I V+ EALV+
Sbjct: 188 -----------------AECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVL 230
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F EM+ G K VTL+SVL ACA LGAL+ GR + Y+ L + + T+LIDMY K
Sbjct: 231 FREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGK 290
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG++++A+ VF G+E D W+ MI A H + +E++ LF EM+ GI PD++TFL
Sbjct: 291 CGSLEDAISVFQGMESR--DRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFL 348
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
G+L AC+H GLV E +F S+ + G+VP +HY C+ D L+R+GQ+ AYEFI ++P++
Sbjct: 349 GVLYACSHSGLVSEGLQYFDSMREFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIK 408
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
PTA + +LL+ C + G DL + V ++++EL H G YV SN+ A RW+E R
Sbjct: 409 PTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCANTGRWEEMNRVR 468
Query: 423 EAMETRGVKKYPGWSFVE 440
+ M +GV K PG S +E
Sbjct: 469 KLMNEKGVVKVPGCSSIE 486
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 11/190 (5%)
Query: 138 GYAKCGEMNMARQVFELMPERNVVSW-SALIDGYVKCG-------DYKEALVIFEEMRDV 189
G AK +++ ARQVF+ +P V W + L+ GY +C +EA +F M +
Sbjct: 77 GAAKPAQLSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEE 136
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G + T VS+L ACA A ++GR + G + + +LI+MYA+CG + A
Sbjct: 137 GVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAA 196
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+F V+ V+ +NAMI E+L LF EMQ G+ +T + +LSACA
Sbjct: 197 RTMFGRVDGEC--VVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACA 254
Query: 310 -HGGLVMEAW 318
G L + W
Sbjct: 255 LLGALELGRW 264
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 135/328 (41%), Gaps = 47/328 (14%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A + G +D C + +N +I +S P +++ LF +M G+ +
Sbjct: 195 AARTMFGRVDGEC----------VVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSV 244
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T + A L EL +H + K +S + ++ +LI MYG CG + A VF GM
Sbjct: 245 TLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGM 304
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
++ +W+ M+ YA S+ +EA+ +FE
Sbjct: 305 ESRDRQAWSVMIVAYAN-------------------HSYG------------REAISLFE 333
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
EM+ G K ++VT + VL AC+H G + +G M + GL + + D+ A+ G
Sbjct: 334 EMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMREFGLVPGIKHYGCVADLLARSG 393
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP--DEITFL 302
+ A + + +L W ++ G ++F + + + D + F
Sbjct: 394 QLDRAYEFIDELPIKPTAIL-WRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFS 452
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKRGMV 330
L CA+ G E K + ++G+V
Sbjct: 453 NL---CANTGRWEEMNRVRKLMNEKGVV 477
>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
Length = 528
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 157/455 (34%), Positives = 253/455 (55%), Gaps = 24/455 (5%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
++ F +L+ L N+ Y+ ++ +H+ +P I+ + +I +S ++ + LF ML + +
Sbjct: 44 LIRFCSLN-LSNLHYAHQIFNHIHSPNIYLFTAIITAFSSQQHT--TFKLFKTMLNSNIR 100
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSC-GDIVYARE 119
P++ YP + K+ + +R L VHAQI K G+ + + SL+ Y G + A +
Sbjct: 101 PNNFIYPHVLKS---VKERFLVDLVHAQIVKCGFLNYPVVETSLVDSYSKVLGGLRDAHK 157
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD M + V + ++ GY + G++ VF+ M +R+V +W+A+I G + G + E
Sbjct: 158 VFDEMSERNIVVFTVLVSGYLRVGDVEKGLMVFDEMVDRDVPAWNAVISGCTQNGFFSEG 217
Query: 180 LVIFEEMRDV----------GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229
+ +F EM G+K N+VT+V VL AC H G L G+ + Y+ G +
Sbjct: 218 IRLFREMVFAAGLGEGGFCKGNKPNQVTVVCVLSACGHGGMLQLGKWIHGYVYRHGFVVD 277
Query: 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI-WNAMIGGLAMHGFVKESLELFTE 288
+ +L+DMY KCG+++ A VF E Q L WN+MI A+HG ++++ F +
Sbjct: 278 SFVSNALVDMYGKCGSLELARKVF---EMDQRKGLTSWNSMINCYALHGKCEDAITFFEK 334
Query: 289 MQIVG--ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSR 345
M G + PDE+TF+GLL+AC HGGLV + +F+ + K G+ P+ HY C++D L R
Sbjct: 335 MVECGGGVRPDEVTFIGLLNACTHGGLVEQGCGYFEMMIKEYGIEPQIAHYGCLIDLLGR 394
Query: 346 AGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGL 405
AGQ EA + + M +EP + GSLL GC HG+ DLAE KKLVE+ P + G L
Sbjct: 395 AGQFDEAMDVVKGMSMEPDEVVWGSLLNGCKVHGRTDLAEFAAKKLVEIDPHNGGYGTML 454
Query: 406 SNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+N+Y +WDE R ++ + K PG S++E
Sbjct: 455 ANIYGQLGKWDEMRNVWSKLKQQKSYKIPGCSWIE 489
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 169/510 (33%), Positives = 253/510 (49%), Gaps = 100/510 (19%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
F WN +I+ YS +P +++ L ML G D T + KA R+ + + +H
Sbjct: 93 FLWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGL 152
Query: 89 IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
+ K + SDLF+ N LI Y CG +V A +VFD MP + SVS+NSM+DGY K G +++A
Sbjct: 153 LKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLA 212
Query: 149 R----------------------------------QVFELMPERNVVSWSALIDGYVKCG 174
R Q+F MPER+++SW+++IDG VKCG
Sbjct: 213 RVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCG 272
Query: 175 DYKEALVIFEEM--RDVGSKAN-------------------EVTLVSVLCACAHLGA--- 210
++A +F+ M RD+ S AN E+ V+ A +G
Sbjct: 273 RMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQ 332
Query: 211 ---------------------LDQGRMMLRY-------MIDKGL-----------SLTLP 231
LD +++ IDKG+ SL
Sbjct: 333 NGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGR 392
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
L +LIDMY+KCG+I+ A++VF +++ D WNA+IGGLA+HG + + + EM+
Sbjct: 393 LGVALIDMYSKCGSIENAMMVFENIKEKSVDH--WNAIIGGLAIHGLGELAFDFLMEMER 450
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVT 350
+ + PD+ITF+GLL+AC H GLV E F+ + + V PK +HY CMVD L RAG +
Sbjct: 451 MRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCMVDILGRAGHIE 510
Query: 351 EAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410
EA F+ +MP EP + SLL+ C H ++ + V + L+ L YV SN+YA
Sbjct: 511 EAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQPVAENLMRLDSPSPSSYVLASNMYA 570
Query: 411 IFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+W++ R R M+ + +KK PG S++E
Sbjct: 571 GLGKWNDVRKVRAMMKQKNLKKIPGCSWIE 600
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 110/299 (36%), Gaps = 65/299 (21%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP--------- 61
G ++ + + + N I W +I GY+K+ + + SLF +M V
Sbjct: 272 GRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYV 331
Query: 62 -----------------------DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDL 98
D+ T A +L + VA+H I + G+ D
Sbjct: 332 QNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDG 391
Query: 99 FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
+ +LI MY CG I A VF+ + K WN+++ G A G + F+ + E
Sbjct: 392 RLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHG---LGELAFDFLME- 447
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
E MR + +++T + +L AC H G + +G M
Sbjct: 448 ------------------------MERMR---VEPDDITFIGLLNACGHAGLVKEGMMCF 480
Query: 219 RYMID-KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
M + L ++D+ + G I+EA + +DV IW +++ H
Sbjct: 481 ELMRRVHKVEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDV-IWRSLLSACKTH 538
>gi|357150678|ref|XP_003575540.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 491
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 145/378 (38%), Positives = 216/378 (57%), Gaps = 6/378 (1%)
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYE---SDLFISNSLIHMYGSCGDIVYAREVFDG 123
P LA L A +H + K+G S ++ S SL +Y G + AR+VFDG
Sbjct: 69 PALAACGRLLTAAAEAEQIHTLLVKSGLPRSVSGVYASTSLARVYARHGRLADARKVFDG 128
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
MP VSWN +LDG+ + G+++ A ++F M ERNVVSW+ ++ G+ + G +EA+ +F
Sbjct: 129 MPETTVVSWNVLLDGFVRAGDLDAAWELFVEMTERNVVSWNTVMVGFARLGRAQEAVELF 188
Query: 184 EEMRDV-GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
EM V G +E T+V + A ++G L GR Y+I + SL L LI+MY +
Sbjct: 189 VEMTTVYGLVPDEATMVGFVSAVRNIGLLGLGRSAHGYVIRREFSLDGALGVGLINMYTR 248
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG++ A + F V +V W + IGG A HG +L LF EM+ +GI P+++TF+
Sbjct: 249 CGSMTAAYLCFSSVT--SKNVEHWTSAIGGFAAHGHPDMALRLFAEMRELGIEPNDVTFV 306
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+L+AC+HGGLV E + +F + K G+ P +HY C+VD L RAG + EA+ +P +
Sbjct: 307 AVLNACSHGGLVDEGFKYFNMMRKMGIRPSIQHYGCLVDLLGRAGFLEEAFNLASSLPKD 366
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P SLL C HG +D+AE+ +KL + +P+H YV LSN YA +W++ + TR
Sbjct: 367 PGFVTWSSLLAACQTHGNVDMAEVAAQKLADAEPNHGSSYVLLSNAYARAGQWEDLKRTR 426
Query: 423 EAMETRGVKKYPGWSFVE 440
ME K PG S++E
Sbjct: 427 SRMEAHRAVKKPGLSWIE 444
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 124/275 (45%), Gaps = 12/275 (4%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + + KV + + WN ++ G+ ++ + + + LFV+M V +++ +
Sbjct: 117 GRLADARKVFDGMPETTVVSWNVLLDGFVRAGDLDAAWELFVEMTERNV----VSWNTVM 172
Query: 71 KASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
RL + + AV + ++ G D + + G + R G +
Sbjct: 173 VGFARLGRAQEAVELFVEMTTVYGLVPDEATMVGFVSAVRNIGLLGLGRSAH-GYVIRRE 231
Query: 130 VSWN-----SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
S + +++ Y +CG M A F + +NV W++ I G+ G AL +F
Sbjct: 232 FSLDGALGVGLINMYTRCGSMTAAYLCFSSVTSKNVEHWTSAIGGFAAHGHPDMALRLFA 291
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
EMR++G + N+VT V+VL AC+H G +D+G M G+ ++ L+D+ + G
Sbjct: 292 EMRELGIEPNDVTFVAVLNACSHGGLVDEGFKYFNMMRKMGIRPSIQHYGCLVDLLGRAG 351
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
++EA + + K + W++++ HG V
Sbjct: 352 FLEEAFNLASSLPK-DPGFVTWSSLLAACQTHGNV 385
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 159/443 (35%), Positives = 244/443 (55%), Gaps = 46/443 (10%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S LG++DY+ KV I+ WN + R + + + + + L+ KM R GV D TY
Sbjct: 123 SDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYT 182
Query: 68 FLAKASGRLAKRELAV-------AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
++ KA E V +HA + + GY S ++I +L+ MY
Sbjct: 183 YVLKAC---VASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMY------------ 227
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
A+ G ++ A VF MP RNVVSWSA+I Y K G EAL
Sbjct: 228 -------------------ARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEAL 268
Query: 181 VIFEEM-RDV-GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
F EM R+ S N VT+VSVL ACA L AL+QG+++ Y++ +GL LP+ ++L+
Sbjct: 269 RTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVT 328
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MY +CG ++ VF + H DV+ WN++I +HG+ K+++++F EM G +P
Sbjct: 329 MYGRCGKLEVGQRVFDRM--HDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTP 386
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
+TF+ +L AC+H GLV E F+++ + G+ P+ EHYACMVD L RA ++ EA + +
Sbjct: 387 VTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQ 446
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
M EP + GSLL C HG ++LAE ++L L+P + G YV L+++YA + WDE
Sbjct: 447 DMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDE 506
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
+ ++ +E RG++K PG ++E
Sbjct: 507 VKRVKKLLEHRGLQKLPGRCWME 529
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 118/264 (44%), Gaps = 39/264 (14%)
Query: 52 VKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSC 111
+++L SP TY L G + A+ VH I G + D F++ LI MY
Sbjct: 66 IRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDL 125
Query: 112 GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV 171
G + YA R+VF+ +R + W+AL
Sbjct: 126 GSVDYA-------------------------------RKVFDKTRKRTIYVWNALFRALT 154
Query: 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA----HLGALDQGRMMLRYMIDKGLS 227
G +E L ++ +M +G +++ T VL AC + L +G+ + ++ +G S
Sbjct: 155 LAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYS 214
Query: 228 LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFT 287
+ + T+L+DMYA+ G + A VF G+ +V+ W+AMI A +G E+L F
Sbjct: 215 SHVYIMTTLVDMYARFGCVDYASYVFGGMPVR--NVVSWSAMIACYAKNGKAFEALRTFR 272
Query: 288 EM--QIVGITPDEITFLGLLSACA 309
EM + +P+ +T + +L ACA
Sbjct: 273 EMMRETKDSSPNSVTMVSVLQACA 296
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 10/210 (4%)
Query: 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY 220
+S + LI K G K+A+ + + + E+ +LC C H +L + R+
Sbjct: 47 ISNNQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELL---ILC-CGHRSSLSDALRVHRH 102
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
++D G L T LI MY+ G++ A VF K + +WNA+ L + G +
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRT--IYVWNALFRALTLAGHGE 160
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHG----GLVMEAWYFFKSLGKRGMVPKSEHY 336
E L L+ +M +G+ D T+ +L AC +M+ L +RG
Sbjct: 161 EVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIM 220
Query: 337 ACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
+VD +R G V A MP+ S
Sbjct: 221 TTLVDMYARFGCVDYASYVFGGMPVRNVVS 250
>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
Length = 888
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 247/431 (57%), Gaps = 2/431 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG+++ + +VL + W T++ + + N +++SL+ +ML G P+ + +
Sbjct: 325 LGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSV 384
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L +H Q K +++F+S++LI MY C + A+ +F +P K
Sbjct: 385 LGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNI 444
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
V WNS++ GY+ +M A ++F+ MP RNV SW+++I GY + + +AL F M
Sbjct: 445 VCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLAS 504
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G E+T SVL ACA L +L+ G+M+ +I G+ ++ + T+L DMYAK G + +
Sbjct: 505 GQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSS 564
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF+ + K ++DV W AMI GLA +GF +ES+ LF +M GITP+E TFL +L AC+
Sbjct: 565 KRVFYEMPK-RNDV-AWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACS 622
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
H GLV A ++F+ + G+ PK++HY CMVD L+RAG + EA + + ++ + A+
Sbjct: 623 HSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWA 682
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL+ C + ++ E K+L EL D+ YV LSN+YA +W +A R M+
Sbjct: 683 ALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGIN 742
Query: 430 VKKYPGWSFVE 440
+KK G S+V+
Sbjct: 743 LKKDGGCSWVQ 753
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 110/403 (27%), Positives = 199/403 (49%), Gaps = 42/403 (10%)
Query: 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQI 89
++ +I G+ ++ P ++ +F +ML GVSP+ +T + KA + +LA+++
Sbjct: 212 FFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLA 271
Query: 90 AKTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
K+ + +L + NSLI +Y GD AR +FD M + VSW ++LD YA+ G++ A
Sbjct: 272 MKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGA 331
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
R+V + MPERN VSW L+ + + G+ KEA+ ++ +M G + N SVL ACA L
Sbjct: 332 RRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASL 391
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
L GR + + S + + ++LIDMY KC + +A ++F+ + Q +++ WN+
Sbjct: 392 QDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP--QKNIVCWNS 449
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328
+I G + + + E+ ELF +M + ++ ++S A ++A F ++ G
Sbjct: 450 LISGYSNNSKMVEAEELFKKMPARNVA----SWNSIISGYAQNRQFIDALKSFHAMLASG 505
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
P G++T S+L C + L++ ++V
Sbjct: 506 QSP---------------GEIT-----------------FSSVLLACASLCSLEMGKMVH 533
Query: 389 KKLVELQPDHDGRYVG--LSNVYAIFKRWDEARTTREAMETRG 429
K+++L + +VG LS++YA D ++ M R
Sbjct: 534 AKIIKLGI-KESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRN 575
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 146/325 (44%), Gaps = 35/325 (10%)
Query: 99 FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
F + ++ + GDIV AR +FDGMP + VS+ +M+D K G + A +++ P
Sbjct: 149 FAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLC 208
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD-----Q 213
+V ++A+I G+V K+AL +F EM G NE+TLVSV+ AC G D
Sbjct: 209 SVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIV 268
Query: 214 GRMMLRYMIDKGLS-----LTLPLQ----------------------TSLIDMYAKCGAI 246
G M ++DK L +TL L+ T+L+D+YA+ G +
Sbjct: 269 GLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDL 328
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ A V E + + + W ++ G KE++ L+++M G P+ F +L
Sbjct: 329 EGARRVLD--EMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLG 386
Query: 307 ACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
ACA + K + ++D + Q+ +A +P +
Sbjct: 387 ACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP-QKNIV 445
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKL 391
SL++G N+ K+ AE + KK+
Sbjct: 446 CWNSLISGYSNNSKMVEAEELFKKM 470
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 167/473 (35%), Positives = 240/473 (50%), Gaps = 69/473 (14%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
NT++R Y+ + P+ ++++FV M LR D TY FL KA A A H +
Sbjct: 176 NTLLRAYALNSLPHAALAVFVDMPLRQR---DTFTYSFLIKALA-TAGVTPVRAAHTHVF 231
Query: 91 KTGYESDLFISNSLIHMYGSC-------------------------------GDIVYARE 119
K G D F+ N+LI Y G++ AR
Sbjct: 232 KLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARS 291
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
+FD MP K +VSWN+MLDGYAK GE A ++F+ MP RNVVSWS ++ Y K GD + A
Sbjct: 292 MFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMA 351
Query: 180 LVIFE-------------------------------EMRDVGSKANEVTLVSVLCACAHL 208
VIF+ EM++ + + V +VS+L ACA
Sbjct: 352 RVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAES 411
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
G L G+ + R++ + L + + +L+DM+ KCG + A +F E + D + WN
Sbjct: 412 GCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIF-DTEIVEKDSVSWNI 470
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR- 327
+IGG AMHG +++L LFT+M+ G PD +T + +LSAC H GLV E FF ++
Sbjct: 471 IIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDY 530
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
G+ P+ EHY CMVD L R G + EA + I MP EP + GSLL+ C H ++ AE+
Sbjct: 531 GIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRLHKNVEYAELA 590
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+L LQP + G Y LSN+YA +W + R M+ G +K G S++E
Sbjct: 591 ANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIE 643
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 117/278 (42%), Gaps = 34/278 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
SA G+++ + + + + W ++ ++ ++ LF +M A + D +
Sbjct: 340 SAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVV 399
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG- 123
+ A L +H + + + N+L+ M+ CG + A +FD
Sbjct: 400 AVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTE 459
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+ K SVSWN ++ G+A G ++AL +F
Sbjct: 460 IVEKDSVSWNIIIGGFAMHGH-------------------------------GEKALNLF 488
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAK 242
+M+ G + VTL++VL AC H+G +++GR M D G+ + ++D+ +
Sbjct: 489 TQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGR 548
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G IKEA+ + + ++V IW +++ +H V+
Sbjct: 549 GGLIKEAVDMIKSMPWEPNEV-IWGSLLSACRLHKNVE 585
>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
Length = 1530
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 146/411 (35%), Positives = 229/411 (55%), Gaps = 34/411 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W+ +I G+ K + F +++R GV PD+ T PF+ KA ++ +H +
Sbjct: 1149 WSIMIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTVALDMGRLIHCVVL 1208
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G D F+ +L+ MY AKC + A+
Sbjct: 1209 KYGLHLDHFVCAALVDMY-------------------------------AKCKVIEDAKL 1237
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F++MP +++V+W+ +I GY +CG+ KE+LV+F+ +R+ G +++ +VS++ ACA LGA
Sbjct: 1238 LFDVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGA 1297
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
+++ R + Y+ SL + L T++IDMYAKCG + A +F + H +V+ W+AMI
Sbjct: 1298 MNKARFVHEYVNRNRFSLDVILGTAMIDMYAKCGDVDSAREIFDNM--HHKNVISWSAMI 1355
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GM 329
HG K++LELF M GI P+ ITF+ LL AC+H GLV + + + G+
Sbjct: 1356 AAYGYHGQGKKALELFPMMLSSGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGV 1415
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P +H+ CMVD L RAGQ+TEA+ FI M +E + SLL C H ++DLAE K
Sbjct: 1416 RPDIKHHTCMVDLLGRAGQLTEAFRFIENMTVEKDEGLWSSLLGACRIHKRIDLAEKAAK 1475
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L+ELQP + G Y+ LSN+YA +W + R+ M R +KK PG++++E
Sbjct: 1476 SLLELQPQNPGNYILLSNIYANAGQWKDVAKIRDLMTKRKLKKIPGYTWIE 1526
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 151/303 (49%), Gaps = 21/303 (6%)
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG--------YAKCGEMNMARQVFE 153
N LI +C +I +++ + T SV +N++ + KC + A +F+
Sbjct: 1083 NCLISTLLNCKNICQIKQLH-ALITTNSVLYNNLTVANKLLYVYVHHKC--LTDAYALFD 1139
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
MP++N VSWS +I G+VK G++ + F+E+ G + + TL V+ AC ALD
Sbjct: 1140 EMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTVALDM 1199
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
GR++ ++ GL L + +L+DMYAKC I++A ++F + D++ W MIGG
Sbjct: 1200 GRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPS--KDLVTWTVMIGGY 1257
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS 333
A G KESL LF ++ G PD+I + +++ACA G + +A + + + +
Sbjct: 1258 AECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDV 1317
Query: 334 EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
M+D ++ G V A E M + S +++ HG+ GKK +E
Sbjct: 1318 ILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISW-SAMIAAYGYHGQ-------GKKALE 1369
Query: 394 LQP 396
L P
Sbjct: 1370 LFP 1372
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 150/395 (37%), Positives = 233/395 (58%), Gaps = 7/395 (1%)
Query: 51 FVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVA--VHAQIAKTGYE-SDLFISNSLIHM 107
F M AGV P+H+T+ L G A+ +H K G + + + + +++ M
Sbjct: 6 FSDMRFAGVEPNHITFIALLSGCGDFPSGSEALGDLLHGYACKLGLDRTHVMVGTAILGM 65
Query: 108 YGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALI 167
Y G AR +FD M K SV+WN+M+DGY + G++N A ++F+ M R+++SW+A++
Sbjct: 66 YSKRGRFRKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMV 125
Query: 168 DGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS 227
+G+VK G ++EAL F EM+ G K + V +++ L AC +LGAL G + RY++ +
Sbjct: 126 NGFVKKGFHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFK 185
Query: 228 LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFT 287
+ + SLID+Y +CG ++ A VF +EK V+ WN++I G A +G ESL F
Sbjct: 186 NNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRT--VVSWNSVIVGFAANGNAHESLFYFR 243
Query: 288 EMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRA 346
+MQ G PD +TF G L+AC+H GLV E +F+++ + + P+ EHY C+VD SRA
Sbjct: 244 KMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRA 303
Query: 347 GQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD-LAEIVGKKLVELQPDHDGRYVGL 405
G++ +A + + MP++P ++GSLL C NHG LAE + K L +L YV L
Sbjct: 304 GRLEDALKVVQSMPMKPNEVVIGSLLAACKNHGNNTLLAERLMKHLSDLNVKSHSNYVIL 363
Query: 406 SNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
SN+YA +W+ A R M+ G+KK PG+S +E
Sbjct: 364 SNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIE 398
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 127/268 (47%), Gaps = 33/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + K+ + N + W ++ G+ K +++S F +M +GV PD++
Sbjct: 101 GQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEALSWFREMQISGVKPDYVAIIAAL 160
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L + +H + +++++ +SNSLI +Y CG + +AR+VFD M + V
Sbjct: 161 AACTNLGALSFGLWIHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVV 220
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS++ G+A G + E+L F +M++ G
Sbjct: 221 SWNSVIVGFAANGNAH-------------------------------ESLFYFRKMQEEG 249
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
K + VT L AC+H+G +++G + M D +S + ++D+Y++ G +++A
Sbjct: 250 FKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRAGRLEDA 309
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
L V + ++V+I +++ HG
Sbjct: 310 LKVVQSMPMKPNEVVI-GSLLAACKNHG 336
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 145/363 (39%), Positives = 222/363 (61%), Gaps = 4/363 (1%)
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
R LA++VHA++ K + S L +S L+ Y + A ++FD MP + +V++N+++ G
Sbjct: 87 RRLALSVHARVLKL-FPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISG 145
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
+ G + A +VF+ MP + VSW+ALIDG VK G + EA+ F M G + + VTL
Sbjct: 146 LMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPDYVTL 205
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
++V+ ACA +GAL G + R ++ +GL + + SLIDMYA+CG ++ A VF G+ K
Sbjct: 206 IAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRK 265
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
V+ WN+MI G A +G +++E F M+ G PD +TF G+L+AC+HGGL E
Sbjct: 266 RT--VVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLTDEGL 323
Query: 319 YFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
++ + + G+ + EHY C+VD L R+G++ EA + MP+ P +LG+LL GC
Sbjct: 324 RYYDLMRAEYGIAARMEHYGCVVDLLGRSGRLEEAMRVVTTMPMRPNEVVLGALLAGCRM 383
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
HG + +AE + + L+EL P D YV LSN+YA +WD A R M+ RG++K PG+S
Sbjct: 384 HGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGLRKRPGYS 443
Query: 438 FVE 440
VE
Sbjct: 444 AVE 446
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 134/290 (46%), Gaps = 39/290 (13%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L G + + +V + P W +I G K+ +++I+ F ML GV PD+
Sbjct: 143 ISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPDY 202
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T + A + L + VH + + G E ++ I+NSLI MY CG + AR+VF G
Sbjct: 203 VTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSG 262
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + VSWNSM+ G+A G +C D E F
Sbjct: 263 MRKRTVVSWNSMIVGFAANG----------------------------RCADAVEH---F 291
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY----MIDKGLSLTLPLQTSLIDM 239
E MR G K + VT VL AC+H G D+G LRY + G++ + ++D+
Sbjct: 292 EAMRREGFKPDAVTFTGVLTACSHGGLTDEG---LRYYDLMRAEYGIAARMEHYGCVVDL 348
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
+ G ++EA+ V + ++V++ A++ G MHG V + +L +
Sbjct: 349 LGRSGRLEEAMRVVTTMPMRPNEVVL-GALLAGCRMHGDVGMAEQLMQHL 397
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 38/237 (16%)
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA--NEVTLVSVLCACAHLGALDQGRM 216
+V SW++ I K GD A M + N+VTL++VL ACA + R
Sbjct: 29 DVASWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARR 88
Query: 217 MLRYMIDKGLSL---TLPLQTSLIDMY-------------------------------AK 242
+ + + L L L L T L+ Y +
Sbjct: 89 LALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGLMR 148
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
G + A VF G+ D + W A+I G +G E++ F M + G+ PD +T +
Sbjct: 149 NGLVAAAFEVFDGMPA--PDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPDYVTLI 206
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
++SACA G + + + + ++G+ ++D +R GQV A + M
Sbjct: 207 AVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGM 263
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 165/487 (33%), Positives = 247/487 (50%), Gaps = 71/487 (14%)
Query: 19 VLSHLSNPR--IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRL 76
V + NP F NT++R Y+ + P +++++F M D TY FL KA
Sbjct: 78 VFASFPNPHATTFLPNTLLRAYALNALPREAVAVFSAMPHR----DSFTYSFLIKALSSA 133
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG---------------DIVY----- 116
L AVH+ + K G D ++ N+LI Y G D+V
Sbjct: 134 GVAPLR-AVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAM 192
Query: 117 -----------AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSA 165
AR +FD M K +VSWN++LDGY K G++ A ++F+ MPERNVVSWS
Sbjct: 193 AAMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVVSWST 252
Query: 166 LIDGYVKCGDYKEALVIFE-------------------------------EMRDVGSKAN 194
++ GY K GD + A VIF+ +M++ + +
Sbjct: 253 VVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELD 312
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
+VS+L ACA G+L G+ + RY+ + L + + +LIDM+ KCG I A VF
Sbjct: 313 VAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYVF- 371
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
E + D + WN +IGG AMHG ++L+ F +M++ G PD +T + +LSAC H G V
Sbjct: 372 DTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFV 431
Query: 315 MEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
E +F ++ + G+VP+ EHY CM+D L R G + EA + I MP +P + GSLL+
Sbjct: 432 EEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLS 491
Query: 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
C H ++ AEI +L +LQP + G Y LS++YA +W + R M+ G +K
Sbjct: 492 ACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSSIYAEAGKWSDMAKARMQMKGTGSQKS 551
Query: 434 PGWSFVE 440
G S++E
Sbjct: 552 SGSSWIE 558
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 140/311 (45%), Gaps = 34/311 (10%)
Query: 3 SFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV--- 59
+ +A+ G ++ + ++ + WNT++ GY+K+ + ++ LF M V
Sbjct: 191 AMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVVSW 250
Query: 60 ------------------------SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYE 95
+ + +T+ + A + E A + Q+ + E
Sbjct: 251 STVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVE 310
Query: 96 SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM----SVSWNSMLDGYAKCGEMNMARQV 151
D+ S++ G + + + + T+ + N+++D + KCG +N A V
Sbjct: 311 LDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYV 370
Query: 152 FEL-MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
F+ + E++ VSW+ +I G+ G +AL F +M+ G + VT+++VL AC H+G
Sbjct: 371 FDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGF 430
Query: 211 LDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
+++GR M D G+ + +ID+ + G IKEA+ + + ++V IW ++
Sbjct: 431 VEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEV-IWGSL 489
Query: 270 IGGLAMHGFVK 280
+ +H V+
Sbjct: 490 LSACRLHKNVE 500
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 149/434 (34%), Positives = 234/434 (53%), Gaps = 35/434 (8%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+++ + +V + + W ++I GY + + +I LF +M GV PD
Sbjct: 399 SKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVT 458
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A + VH I + E++ F+SN+L MY
Sbjct: 459 SILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMY------------------- 499
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
AKCG M A VF M +++V+SW+ +I GY K EAL +F EM+
Sbjct: 500 ------------AKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQ 547
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
SK + T+ +L ACA L ALD+GR + Y + G S + +++DMY KCG +
Sbjct: 548 R-ESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLV 606
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A +F + D++ W MI G MHG+ E++ F +M++ GI PDE++F+ +L A
Sbjct: 607 LARSLFDMIP--NKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYA 664
Query: 308 CAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H GL+ E W F + K + P EHYACMVD L+R G + +A++FI MP++P A+
Sbjct: 665 CSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDAT 724
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ G+LL GC H + LAE V +++ EL+P++ G YV L+N+YA ++W+E + R+ +
Sbjct: 725 IWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIG 784
Query: 427 TRGVKKYPGWSFVE 440
RG+KK PG S++E
Sbjct: 785 QRGLKKNPGCSWIE 798
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 158/362 (43%), Gaps = 74/362 (20%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
V LS +IF WN +I YS S N +SI+LF +ML G+ P+ T+ + K +A+
Sbjct: 207 VFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVAR 266
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
E VH I K G+ S + NSLI Y + A+++FD + + +SWNSM+ G
Sbjct: 267 VEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISG 326
Query: 139 YAKCGEMNMARQVFELM----------------------------------------PER 158
Y K G + ++F M +R
Sbjct: 327 YVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDR 386
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFE-------------------------------EMR 187
V + L+D Y KCGD A+ +FE EM+
Sbjct: 387 EVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMK 446
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G + + S+L ACA G L G+++ Y+ + L + +L DMYAKCG++K
Sbjct: 447 SRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMK 506
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
+A VF ++K DV+ WN MIGG + E+L LF EMQ PD T +L A
Sbjct: 507 DAHDVFSHMKK--KDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPA 563
Query: 308 CA 309
CA
Sbjct: 564 CA 565
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 4/247 (1%)
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
Y KCG++ R VF+ + E + W+ +I Y G+Y E++ +F++M ++G K N T
Sbjct: 195 YVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTF 254
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
S+L A + +++GR + + G + + SLI Y ++ A +F E
Sbjct: 255 SSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFD--EL 312
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
DV+ WN+MI G +G +E+F +M + G+ D T + + ACA+ G ++
Sbjct: 313 TDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGK 372
Query: 319 YFFKSLGKRGMVPKSEHY-ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
K + + + ++D S+ G + A +M E T S++TG +
Sbjct: 373 VLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMD-EKTVVSWTSMITGYVR 431
Query: 378 HGKLDLA 384
G D A
Sbjct: 432 EGLSDGA 438
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 4/148 (2%)
Query: 170 YVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229
+ + GD K A+ + ++ S + S+L CA ++ GR + + G+ +
Sbjct: 127 FCEVGDLKNAMELLCSSQN--SNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMID 184
Query: 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
L L+ MY KCG +KE +VF + +S + +WN MI + G ES+ LF +M
Sbjct: 185 GILGVKLVFMYVKCGDLKEGRMVFDKLS--ESKIFLWNLMISEYSGSGNYGESINLFKQM 242
Query: 290 QIVGITPDEITFLGLLSACAHGGLVMEA 317
+GI P+ TF +L A V E
Sbjct: 243 LELGIKPNSYTFSSILKCFAAVARVEEG 270
>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
Length = 950
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 247/431 (57%), Gaps = 2/431 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG+++ + +VL + W T++ + + N +++SL+ +ML G P+ + +
Sbjct: 325 LGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSV 384
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L +H Q K +++F+S++LI MY C + A+ +F +P K
Sbjct: 385 LGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNI 444
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
V WNS++ GY+ +M A ++F+ MP RNV SW+++I GY + + +AL F M
Sbjct: 445 VCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLAS 504
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G E+T SVL ACA L +L+ G+M+ +I G+ ++ + T+L DMYAK G + +
Sbjct: 505 GQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSS 564
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF+ + K ++DV W AMI GLA +GF +ES+ LF +M GITP+E TFL +L AC+
Sbjct: 565 KRVFYEMPK-RNDV-AWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACS 622
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
H GLV A ++F+ + G+ PK++HY CMVD L+RAG + EA + + ++ + A+
Sbjct: 623 HSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWA 682
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL+ C + ++ E K+L EL D+ YV LSN+YA +W +A R M+
Sbjct: 683 ALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGIN 742
Query: 430 VKKYPGWSFVE 440
+KK G S+V+
Sbjct: 743 LKKDGGCSWVQ 753
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 110/403 (27%), Positives = 199/403 (49%), Gaps = 42/403 (10%)
Query: 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQI 89
++ +I G+ ++ P ++ +F +ML GVSP+ +T + KA + +LA+++
Sbjct: 212 FFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLA 271
Query: 90 AKTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
K+ + +L + NSLI +Y GD AR +FD M + VSW ++LD YA+ G++ A
Sbjct: 272 MKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGA 331
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
R+V + MPERN VSW L+ + + G+ KEA+ ++ +M G + N SVL ACA L
Sbjct: 332 RRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASL 391
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
L GR + + S + + ++LIDMY KC + +A ++F+ + Q +++ WN+
Sbjct: 392 QDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP--QKNIVCWNS 449
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328
+I G + + + E+ ELF +M + ++ ++S A ++A F ++ G
Sbjct: 450 LISGYSNNSKMVEAEELFKKMPARNVA----SWNSIISGYAQNRQFIDALKSFHAMLASG 505
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
P G++T S+L C + L++ ++V
Sbjct: 506 QSP---------------GEIT-----------------FSSVLLACASLCSLEMGKMVH 533
Query: 389 KKLVELQPDHDGRYVG--LSNVYAIFKRWDEARTTREAMETRG 429
K+++L + +VG LS++YA D ++ M R
Sbjct: 534 AKIIKLGI-KESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRN 575
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 146/325 (44%), Gaps = 35/325 (10%)
Query: 99 FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
F + ++ + GDIV AR +FDGMP + VS+ +M+D K G + A +++ P
Sbjct: 149 FAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLC 208
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD-----Q 213
+V ++A+I G+V K+AL +F EM G NE+TLVSV+ AC G D
Sbjct: 209 SVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIV 268
Query: 214 GRMMLRYMIDKGLS-----LTLPLQ----------------------TSLIDMYAKCGAI 246
G M ++DK L +TL L+ T+L+D+YA+ G +
Sbjct: 269 GLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDL 328
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ A V E + + + W ++ G KE++ L+++M G P+ F +L
Sbjct: 329 EGARRVLD--EMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLG 386
Query: 307 ACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
ACA + K + ++D + Q+ +A +P +
Sbjct: 387 ACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP-QKNIV 445
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKL 391
SL++G N+ K+ AE + KK+
Sbjct: 446 CWNSLISGYSNNSKMVEAEELFKKM 470
>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 166/450 (36%), Positives = 236/450 (52%), Gaps = 65/450 (14%)
Query: 54 MLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFIS------------ 101
M RA V+PD T+P + KA G + + VH + +TG ++DLF
Sbjct: 1 MRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGD 60
Query: 102 ------------------NSLIHMYGSCGDIVYA-------------------------- 117
NS++ Y CG++ A
Sbjct: 61 CRSGRKVFDHGVRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMA 120
Query: 118 ------REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV 171
RE+FD MP + V WNSM+DGYA+ G M+ AR +FE MPERNV+SWS +IDGYV
Sbjct: 121 GGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYV 180
Query: 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
+ G+ EAL F+ M G K + V V + ACA LGAL+QGR + Y+ K + +
Sbjct: 181 RFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVV 240
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
+QT+LIDMY KCG + A ++F + K V+ WN MI GL HG+ ++++LF +M+
Sbjct: 241 VQTALIDMYVKCGRLDLAKLIFESMPKKS--VVTWNVMIVGLGTHGYGLDAIKLFNQMET 298
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVT 350
D+++ L +L++C H GLV E F + K G+ PK EHY ++D L RAG+V
Sbjct: 299 ERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVD 358
Query: 351 EAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410
+A I MP+EPT + GSLL C +H ++LAE+ ++L L D G YV LSN+YA
Sbjct: 359 QARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYA 418
Query: 411 IFKRWDEARTTREAMETRGVKKYPGWSFVE 440
WD+ R+ M G+KK G S +E
Sbjct: 419 DEGMWDDVFRIRKLMSAEGMKKNIGRSVIE 448
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 111/241 (46%), Gaps = 34/241 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + + + + W+ VI GY + PN+++ F +MLR G+ PD +
Sbjct: 152 GRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAV 211
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A +L E +H+ + K D+ + +LI MY CG + A+ +F+ MP K V
Sbjct: 212 AACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVV 271
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WN M+ G G + L +A+ +F +M
Sbjct: 272 TWNVMIVGLGTHG--------YGL-----------------------DAIKLFNQMETER 300
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ--TSLIDMYAKCGAIKE 248
+ +++++++VL +C H G + +G + + Y ++K L L ++ +LID+ + G + +
Sbjct: 301 APMDDLSILAVLTSCTHAGLVSEG-LGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQ 359
Query: 249 A 249
A
Sbjct: 360 A 360
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 250/473 (52%), Gaps = 52/473 (10%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
++ L + + WN++I GY + + + ++ +M+ G+ D T +
Sbjct: 206 ELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSG 265
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
L AVH+ K+ +E + SN+L+ MY CGD+ A VF+ M + VSW SM+
Sbjct: 266 TLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIA 325
Query: 138 GYAKCGEMNMARQVFELMP---------------------------------------ER 158
GY + G + A ++ + M E
Sbjct: 326 GYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMES 385
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGS--------KANEVTLVSVLCACAHL 208
N+ +AL+D Y KCG + A +F M +D+ S K + T+ VL ACA L
Sbjct: 386 NLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASL 445
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
AL++G+ + Y++ G S + +L+D+Y KCG + A ++F + D++ W
Sbjct: 446 SALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP--SKDLVSWTV 503
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR- 327
MI G MHG+ E++ F EM+ GI PDE++F+ +L AC+H GL+ + W FF +
Sbjct: 504 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDF 563
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ PK EHYACMVD LSR G +++AYEFI +P+ P A++ G+LL GC N+ ++LAE V
Sbjct: 564 NIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKV 623
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+++ EL+P++ G YV L+N+YA ++W+E + RE + +G++K PG S++E
Sbjct: 624 AERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIE 676
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 139/315 (44%), Gaps = 51/315 (16%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G++D + +V + + W ++I GY++ + +I L +M + GV D +
Sbjct: 297 SKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAIT 356
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A R + VH I ES+LF+ N+L+ MY CG + A VF M K
Sbjct: 357 SILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK 416
Query: 128 MSVSWNSML-------------------------------------------------DG 138
+SWN+M+ D
Sbjct: 417 DIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 476
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
Y KCG + +AR +F+++P +++VSW+ +I GY G EA+ F EMRD G + +EV+
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSF 536
Query: 199 VSVLCACAHLGALDQG-RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+S+L AC+H G L+QG R D + L ++D+ ++ G + +A +
Sbjct: 537 ISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLP 596
Query: 258 KHQSDVLIWNAMIGG 272
D IW A++ G
Sbjct: 597 I-APDATIWGALLCG 610
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 119/248 (47%), Gaps = 22/248 (8%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VH+ I D + L+ Y +CGD+ R VFD M K WN M+ YAK G+
Sbjct: 121 VHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180
Query: 145 MNMARQVFELMPE--------------------RNVVSWSALIDGYVKCGDYKEALVIFE 184
+ +F++M E R+V+SW+++I GYV G + L I++
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYK 240
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+M +G + T++SVL CA+ G L G+ + I + +L+DMY+KCG
Sbjct: 241 QMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCG 300
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+ AL VF + + +V+ W +MI G G +++L +M+ G+ D + +
Sbjct: 301 DLDGALRVFEKM--GERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSI 358
Query: 305 LSACAHGG 312
L ACA G
Sbjct: 359 LHACARSG 366
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 26/234 (11%)
Query: 157 ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRM 216
+ V ++A I + + GD + A+ + + S+ T SVL CA L + G+
Sbjct: 63 DHQVTDYNAKILHFCQLGDLENAMELICMCKK--SELETKTYSSVLQLCAGLKSFTDGKK 120
Query: 217 MLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ + + + L L+ YA CG +KE VF +EK +V +WN M+ A
Sbjct: 121 VHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEK--KNVYLWNFMVSEYAKI 178
Query: 277 GFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHY 336
G KES+ LF M GI G A+ F L R ++ +
Sbjct: 179 GDFKESICLFKIMVEKGI---------------EGKRPESAFELFDKLCDRDVIS----W 219
Query: 337 ACMVDALSRAGQVTEA---YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
M+ G Y+ + + ++ + + S+L GC N G L L + V
Sbjct: 220 NSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAV 273
>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 151/432 (34%), Positives = 227/432 (52%), Gaps = 35/432 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+++ + +V + + WN++I GY + I LF +M GV P T L
Sbjct: 256 GHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLI 315
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
R A+ VH + +SD+FI++SL
Sbjct: 316 MVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSL-------------------------- 349
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+D Y KCG++ +A +F+L+P+ VVSW+ +I GYV G EAL +F EMR
Sbjct: 350 -----MDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSY 404
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ + +T SVL AC+ L AL++G + +I+K L + +L+DMYAKCGA+ EA
Sbjct: 405 VEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAF 464
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + K D++ W +MI HG +LELF EM + PD +TFL +LSAC H
Sbjct: 465 SVFKCLPKR--DLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGH 522
Query: 311 GGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP-LEPTASML 368
GLV E Y+F + G++P+ EHY+C++D L RAG++ EAYE + Q P + +L
Sbjct: 523 AGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELL 582
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+L + C H +DL + + L++ PD Y+ LSN+YA +WDE R R M+
Sbjct: 583 STLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKEL 642
Query: 429 GVKKYPGWSFVE 440
G+KK PG S++E
Sbjct: 643 GLKKNPGCSWIE 654
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 124/455 (27%), Positives = 206/455 (45%), Gaps = 72/455 (15%)
Query: 14 DYSCKVLSHLSNP-RIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFLAK 71
D++ V ++ NP I WN ++ GY+K+ +++ LF K+L + PD TYP + K
Sbjct: 55 DHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLK 114
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A G L K L +H + KTG D+ + +SL+ MY
Sbjct: 115 ACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMY----------------------- 151
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
AKC A +F MPE++V W+ +I Y + G++KEAL F MR G
Sbjct: 152 --------AKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGF 203
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ N VT+ + + +CA L L++G + +I+ G L + ++L+DMY KCG ++ A+
Sbjct: 204 EPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIE 263
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF + K V+ WN+MI G + G ++LF M G+ P T L+ C+
Sbjct: 264 VFEQMPK--KTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRS 321
Query: 312 GLVMEAWY-----------------------FFKSLGKR-------GMVPKSE--HYACM 339
++E + +FK GK ++PKS+ + M
Sbjct: 322 ARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKC-GKVELAENIFKLIPKSKVVSWNVM 380
Query: 340 VDALSRAGQVTEAYEFICQMP---LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQP 396
+ G++ EA +M +EP A S+LT C L+ E + ++E +
Sbjct: 381 ISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKL 440
Query: 397 DHDGRYVG-LSNVYAIFKRWDEARTTREAMETRGV 430
D++ +G L ++YA DEA + + + R +
Sbjct: 441 DNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDL 475
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 133/291 (45%), Gaps = 34/291 (11%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+H ++ G ++D+F+ +LI++Y SC +A+ VFD M +S
Sbjct: 25 IHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISL------------ 72
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS-KANEVTLVSVLC 203
W+ L+ GY K Y EAL +FE++ K + T SVL
Sbjct: 73 ------------------WNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLK 114
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
AC L G+M+ ++ GL + + + +SL+ MYAKC A ++A+ +F+ E + DV
Sbjct: 115 ACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFN--EMPEKDV 172
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
WN +I G KE+LE F M+ G P+ +T +S+CA + +
Sbjct: 173 ACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEE 232
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
L G + S + +VD + G + A E QMP + T S+++G
Sbjct: 233 LINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMP-KKTVVAWNSMISG 282
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
L+ +L AC + +L QG+++ + ++ GL + L +LI++Y C A VF +E
Sbjct: 6 LLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNME 65
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTE-MQIVGITPDEITFLGLLSACAHGGL 313
+ ++ +WN ++ G + E+LELF + + + PD T+ +L AC GGL
Sbjct: 66 -NPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKAC--GGL 119
>gi|357494773|ref|XP_003617675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519010|gb|AET00634.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 146/417 (35%), Positives = 227/417 (54%), Gaps = 35/417 (8%)
Query: 24 SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAV 83
S I YWN +I GY + K I LF +M G+ + + + G+L + L
Sbjct: 376 SQGSIEYWNFMIVGYGRIGKNVKCIQLFREMQYLGIRSESVGIVSAIASCGQLGEINLGR 435
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
++H + K + + ++NSLI MYG KC
Sbjct: 436 SIHCNVIKGFVDETISVTNSLIEMYG-------------------------------KCD 464
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
+MN++ ++F ER+V+ W+ALI ++ Y+EA+ +F+ M N TLV VL
Sbjct: 465 KMNVSWRIFN-RSERDVILWNALISAHIHVKHYEEAISLFDIMIMEDQNPNTATLVVVLS 523
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
AC+HL L++G + RY+ +KG L LPL T+L+DMYAKCG ++++ VF + + DV
Sbjct: 524 ACSHLAFLEKGERLHRYINEKGFKLNLPLGTALVDMYAKCGQLEKSREVFDSM--MEKDV 581
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
+ WNAMI G M+G+ + ++E+F M+ + P+EITFL LLSACAH GLV E F
Sbjct: 582 ICWNAMISGYGMNGYAESAIEIFNLMEESNVKPNEITFLSLLSACAHAGLVEEGKNVFAK 641
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+ + P +HY CMVD L R+ + EA E + MP+ P + G+LL+ C H ++++
Sbjct: 642 MQSYSVKPNLKHYTCMVDLLGRSCNLEEAEELVLSMPIPPDGGVWGALLSACKTHNQIEM 701
Query: 384 AEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR-GVKKYPGWSFV 439
+GK ++ +P++DG Y+ ++N+Y+ RWDEA R M+ R + K GWS V
Sbjct: 702 GIRIGKNAIDSEPENDGYYIMVANMYSSIGRWDEAENVRRTMKDRCSMGKKAGWSMV 758
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 133/283 (46%), Gaps = 37/283 (13%)
Query: 29 FYWNTVIRG-YSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
F WN+ ++ +S+S P + +S + M V P+H T+P +A + + +HA
Sbjct: 75 FLWNSFLKTLFSRSLYP-QFLSFYSLMRSENVLPNHFTFPMVASSYAHFMMIRSGMNLHA 133
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
K G+ F NS + GS S + Y++C EMN
Sbjct: 134 LACKVGF----FPENSAV---GS-----------------------SFVSLYSRCDEMND 163
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG---SKANEVTLVSVLCA 204
A +VF+ +P R+VV+W+AL+ GYV+ G+ + L EM VG K N TL A
Sbjct: 164 AVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECISEMYRVGDDSQKPNARTLEGGFLA 223
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
C +LG L GR + ++ G+ L +Q+S++ MY KCG +EA F E D+L
Sbjct: 224 CGNLGDLVSGRCLHGLVVKNGIGCLLDIQSSVLSMYCKCGVPREAYQSFS--EVINKDLL 281
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
W +MI A G + + + F EM + PD + +LS
Sbjct: 282 SWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMVIGCILSG 324
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 150/340 (44%), Gaps = 35/340 (10%)
Query: 20 LSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKR 79
S + N + W ++IR Y++ + + F +ML V PD + + G
Sbjct: 272 FSEVINKDLLSWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMVIGCILSGFGNSVDV 331
Query: 80 ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY 139
A H I + Y D + NSL+ MY
Sbjct: 332 YGGKAFHGLIIRRHYAPDEMVDNSLLSMY------------------------------- 360
Query: 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLV 199
K G ++ A ++F+ + ++ W+ +I GY + G + + +F EM+ +G ++ V +V
Sbjct: 361 CKFGMLSFAERLFQ-RSQGSIEYWNFMIVGYGRIGKNVKCIQLFREMQYLGIRSESVGIV 419
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
S + +C LG ++ GR + +I + T+ + SLI+MY KC + + +F+ E+
Sbjct: 420 SAIASCGQLGEINLGRSIHCNVIKGFVDETISVTNSLIEMYGKCDKMNVSWRIFNRSER- 478
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
DV++WNA+I +E++ LF M + P+ T + +LSAC+H + +
Sbjct: 479 --DVILWNALISAHIHVKHYEEAISLFDIMIMEDQNPNTATLVVVLSACSHLAFLEKGER 536
Query: 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
+ + ++G +VD ++ GQ+ ++ E M
Sbjct: 537 LHRYINEKGFKLNLPLGTALVDMYAKCGQLEKSREVFDSM 576
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 124/314 (39%), Gaps = 38/314 (12%)
Query: 3 SFSAL-SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG--- 58
SF +L S ++ + KV + + W ++ GY ++ + +M R G
Sbjct: 150 SFVSLYSRCDEMNDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECISEMYRVGDDS 209
Query: 59 VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
P+ T A G L +H + K G L I +S++ MY CG A
Sbjct: 210 QKPNARTLEGGFLACGNLGDLVSGRCLHGLVVKNGIGCLLDIQSSVLSMYCKCGVPREAY 269
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
+ F + K +SW SM+ YA+ G M+ + F M E V C D
Sbjct: 270 QSFSEVINKDLLSWTSMIRVYARFGMMSDCVRFFWEMLENQV------------CPD--- 314
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
+VI + G+ V V A G + + M+D SL+
Sbjct: 315 GMVIGCILSGFGNS------VDVYGGKAFHGLIIRRHYAPDEMVD----------NSLLS 358
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MY K G + A +F ++ Q + WN MI G G + ++LF EMQ +GI +
Sbjct: 359 MYCKFGMLSFAERLF---QRSQGSIEYWNFMIVGYGRIGKNVKCIQLFREMQYLGIRSES 415
Query: 299 ITFLGLLSACAHGG 312
+ + +++C G
Sbjct: 416 VGIVSAIASCGQLG 429
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 9/191 (4%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ S +V + + WN +I GY + +I +F M + V P+ +T+ L
Sbjct: 564 GQLEKSREVFDSMMEKDVICWNAMISGYGMNGYAESAIEIFNLMEESNVKPNEITFLSLL 623
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A E V A++ + +L ++ + G ++ A E+ MP
Sbjct: 624 SACAHAGLVEEGKNVFAKMQSYSVKPNLKHYTCMVDLLGRSCNLEEAEELVLSMPIPPDG 683
Query: 131 S-WNSMLDGYAKCGEMNM----ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
W ++L ++ M + + PE N + + + Y G + EA +
Sbjct: 684 GVWGALLSACKTHNQIEMGIRIGKNAIDSEPE-NDGYYIMVANMYSSIGRWDEAENVRRT 742
Query: 186 MRD---VGSKA 193
M+D +G KA
Sbjct: 743 MKDRCSMGKKA 753
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 169/498 (33%), Positives = 263/498 (52%), Gaps = 67/498 (13%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM------------ 54
LS ++ YS + + L NP F +N +++ +SK+ + SLF +M
Sbjct: 48 LSISTSVSYSTSIFNRLLNPSTFLYNILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYT 107
Query: 55 ------------------------LRAGVSPDHLT----YPFLAKASGRLAKREL----- 81
+R GVS D F K L+ R++
Sbjct: 108 YPLLIKVCSNELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIP 167
Query: 82 ---------AVAVHAQI-----AKTGYES----DLFISNSLIHMYGSCGDIVYAREVFDG 123
VA +A + AK +E +L N++I G GD+ AR+VFD
Sbjct: 168 ERNVVSWTAMVAGYASVGDLENAKRVFERMPERNLPSWNAMISGLGKAGDLSGARKVFDE 227
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + VS+ M+DGYAK G+M AR +F+ PE++VV+WSALI GY + EA+ IF
Sbjct: 228 MVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIF 287
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL-SLTLPLQTSLIDMYAK 242
EM + K +E +VS++ AC+ LG D + + Y+ + + + +LIDM+AK
Sbjct: 288 FEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAK 347
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG +++A+ +F + D++ ++I GL++HG E++ELF M G+ PD + F
Sbjct: 348 CGNMEKAVKLFQDMPSR--DLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFT 405
Query: 303 GLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+L+AC+ GGL+ + W+FF ++ K +VP HYACMVD LSRAGQ+ AY+ + MPL
Sbjct: 406 VILTACSRGGLIEDGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPL 465
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
+P A G+LL C HG ++L E V +L+EL+P+ G YV LSN+YA +W +
Sbjct: 466 KPHACAWGALLGACKLHGDVELREEVANRLLELEPEKAGSYVLLSNIYASANQWLDVSIV 525
Query: 422 REAMETRGVKKYPGWSFV 439
R+ M+ RG++K PG S++
Sbjct: 526 RDEMKERGIRKIPGCSYI 543
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 121/310 (39%), Gaps = 65/310 (20%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVI---------------------------- 35
S L G++ + KV + + + +I
Sbjct: 209 ISGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVAWS 268
Query: 36 ---RGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKT 92
GYS+++ PN+++ +F +M+ V PD L A +L +LA V + +++T
Sbjct: 269 ALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQT 328
Query: 93 GYES-DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQV 151
++ + +LI M+ CG++ A ++F MP+
Sbjct: 329 SIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPS------------------------- 363
Query: 152 FELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGAL 211
R+++ +LI G G EA+ +F M D G + V +L AC+ G +
Sbjct: 364 ------RDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLI 417
Query: 212 DQGRMMLRYMIDKGLSLTLPLQTS-LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
+ G M +K + P + ++D+ ++ G ++ A + + + W A++
Sbjct: 418 EDGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPL-KPHACAWGALL 476
Query: 271 GGLAMHGFVK 280
G +HG V+
Sbjct: 477 GACKLHGDVE 486
>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 670
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 148/411 (36%), Positives = 235/411 (57%), Gaps = 34/411 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WNT+I G+ ++ +++++F +ML GV PD +T + +L + +H I
Sbjct: 292 WNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIK 351
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
D+ + NSLI+MY AKCG+M A
Sbjct: 352 DHEIHCDIILQNSLINMY-------------------------------AKCGDMAAAEI 380
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+FE M R++VSW+A++ GYVK ++ A +F++M+ A+E+ LVS+L AC+ LGA
Sbjct: 381 IFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGA 440
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
LD+GR + Y+ +K + + L+++L+DMYAKCG I A +F + Q+ L WNAMI
Sbjct: 441 LDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQT--LAWNAMI 498
Query: 271 GGLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
GGLA G KE++ LF ++ ++ PD IT +L AC H G+V E ++F + G+
Sbjct: 499 GGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCACTHVGMVDEGLHYFNLMLTLGI 558
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
VP +EHY C+VD L RAG + EAY FI +MP++P + GSLL C H +++L +I+G+
Sbjct: 559 VPDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNPVIWGSLLAACRVHHRMELGKIIGQ 618
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+++L P+ G +V +SN++A +WD+ R M +R V+K PG S ++
Sbjct: 619 HIIDLAPNDVGAHVLISNLHAEEGQWDDVEQVRGMMGSRRVEKSPGHSSIQ 669
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 130/462 (28%), Positives = 214/462 (46%), Gaps = 79/462 (17%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
++ Y+ KV ++ P WN +IRGY+ P ++ LF M R+GVSPD+ T +A+
Sbjct: 68 DMPYARKVFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQ 127
Query: 72 ASGRLAK---RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+S A R AVHA + + G+ SDLF+ + LI+ YG+ + AR+VF+ M +
Sbjct: 128 SSAAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERD 187
Query: 129 SVSWNSMLDGYAKCGEM-NMARQVFELMP------------------------------- 156
VSW M+ +A+CG+ N+ R + E+
Sbjct: 188 VVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYA 247
Query: 157 -------ERNVVSWSALIDGYVKC-------------------------------GDYKE 178
E +V +ALI YVKC G +KE
Sbjct: 248 RVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKE 307
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
AL +FEEM G + +TLVSVL A LG L QGR + Y+ D + + LQ SLI+
Sbjct: 308 ALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLIN 367
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MYAKCG + A I+F + + D++ W AM+ G + + LF +M++ + E
Sbjct: 368 MYAKCGDMAAAEIIFENMARR--DIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASE 425
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
+ + LLSAC+ G + + + ++ + + +VD ++ G + A E +
Sbjct: 426 MALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSR 485
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVEL---QPD 397
M + T + +++ G + G+ A + ++L++L +PD
Sbjct: 486 MRHKQTLA-WNAMIGGLASQGQGKEAVALFEQLLKLRDPKPD 526
>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 572
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 163/450 (36%), Positives = 244/450 (54%), Gaps = 48/450 (10%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRI--FYWNTVIRGYSKSKNPNK---SISLFVKML 55
+ +F+ALS G+++Y+ +LS +NP + +Y+NT++R +S++ P ++SLF+ M
Sbjct: 33 VFTFAALSPFGDLNYARLLLS--TNPTLNSYYYNTLLRAFSQTPLPTPPFHALSLFLSM- 89
Query: 56 RAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV 115
PD+ T+PFL K R L +HA + K G+ DL+I N L+HMY GD++
Sbjct: 90 --PSPPDNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEFGDLL 147
Query: 116 YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
AR +FD MP + VSW SM I G V
Sbjct: 148 LARSLFDRMPHRDVVSWTSM-------------------------------IGGLVNHDL 176
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL--TLPLQ 233
EA+ +FE M G + NE T++SVL ACA GAL GR + + + G+ + +
Sbjct: 177 PVEAINLFERMLQCGVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVS 236
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
T+L+DMYAK G I A VF V DV +W AMI GLA HG K+++++F +M+ G
Sbjct: 237 TALVDMYAKGGCIASARKVFDDVV--HRDVFVWTAMISGLASHGLCKDAIDMFVDMESSG 294
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEA 352
+ PDE T +L+AC + GL+ E + F + +R GM P +H+ C+VD L+RAG++ EA
Sbjct: 295 VKPDERTVTAVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEA 354
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL--VELQPDHDGRYVGLSNVYA 410
+F+ MP+EP + +L+ C HG D AE + K L +++ D G Y+ SNVYA
Sbjct: 355 EDFVNAMPIEPDTVLWRTLIWACKVHGDADRAERLMKHLEIQDMRADDSGSYILASNVYA 414
Query: 411 IFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+W RE M +G+ K PG S +E
Sbjct: 415 STGKWCNKAEVRELMNKKGLVKPPGTSRIE 444
>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 169/432 (39%), Positives = 235/432 (54%), Gaps = 43/432 (9%)
Query: 15 YSCKVLS-HLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS 73
Y+ VLS L +P F NTV+R + S +P +++L + L PD TYP L +A
Sbjct: 74 YAVTVLSCLLPDPDPFSLNTVLRIAASSAHPRIALALHRRRL---APPDTHTYPPLLQAC 130
Query: 74 GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT--KMSVS 131
RL ++HA+ AK G + +F+ NSL+H YG+CG A VFD +P + VS
Sbjct: 131 TRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVS 190
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
WNS+++G+A G N E L IF E +
Sbjct: 191 WNSVMNGFAANGRPN-------------------------------EVLTIFRETLEADL 219
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ T+VSVL ACA +GAL GR + + GL + +LID+YAKCG +++A
Sbjct: 220 MPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWK 279
Query: 252 VFH--GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF GV + V+ W ++I GLA +GF K++LELF M+ + P +IT +G+L AC+
Sbjct: 280 VFEEMGVAR---TVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACS 336
Query: 310 HGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV + + +F + K G+ P EH CMVD L RAG+V EA+ +I MP+EP A +
Sbjct: 337 HCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVW 396
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+LL C H KL+L E +LVEL P H G YV LSN+YA RW +A R+ M T
Sbjct: 397 RTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATH 456
Query: 429 GVKKYPGWSFVE 440
GV+K PG S VE
Sbjct: 457 GVRKNPGHSLVE 468
>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
Length = 605
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 156/442 (35%), Positives = 243/442 (54%), Gaps = 9/442 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+LSF A + Y+ ++L+H +P +N + + LR
Sbjct: 43 LLSFLARDPDSHFPYASRLLAHHPDPHPALFNPLFSALPTRHAARLLALMLSLPLR---- 98
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PDH T+P + ++ L L +HA + K G+ + N+L+ Y + A V
Sbjct: 99 PDHFTFPQILPSAQPL---HLVAQLHALLLKLGFHAHTQSLNALLAAYLANARPDLASRV 155
Query: 121 FDGMPTKMSV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
F G + V SW +M+ G K G + AR +F+ MPERN+VSW+A++ GYVK + +A
Sbjct: 156 FRGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDA 215
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F+EMR G N + + AC GAL +GR + R++ G+ + L T+++DM
Sbjct: 216 LEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDM 275
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y KCG ++EA VF + + WN MIGG A+HG +++L+LF M+ G+ PD++
Sbjct: 276 YCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDV 335
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
T + +L+ACAH G++ E ++F + +R G+ PK EHY CMVD RAG++ EA + I
Sbjct: 336 TLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQD 395
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP+EP +LG+L HG +DL E +G +++EL P + GRYV L+N+ A RW++
Sbjct: 396 MPMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDV 455
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R M+ R V K G S +E
Sbjct: 456 ARVRRLMDERNVSKEAGRSVIE 477
>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
Length = 950
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 247/431 (57%), Gaps = 2/431 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LG+++ + +VL + W T++ + + N +++SL+ +ML G P+ + +
Sbjct: 325 LGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSV 384
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L +H Q K +++F+S++LI MY C + A+ +F +P K
Sbjct: 385 LGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNI 444
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
V WNS++ GY+ +M A ++F+ MP RNV SW+++I GY + + +AL F M
Sbjct: 445 VCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLAS 504
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G E+T SVL ACA L +L+ G+M+ +I G+ ++ + T+L DMYAK G + +
Sbjct: 505 GQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSS 564
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF+ + K ++DV W AMI GLA +GF +ES+ LF +M GITP+E TFL +L AC+
Sbjct: 565 KRVFYEMPK-RNDV-AWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACS 622
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
H GLV A ++F+ + G+ PK++HY CMVD L+RAG + EA + + ++ + A+
Sbjct: 623 HSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWA 682
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL+ C + ++ E K+L EL D+ YV LSN+YA +W +A R M+
Sbjct: 683 ALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGIN 742
Query: 430 VKKYPGWSFVE 440
+KK G S+V+
Sbjct: 743 LKKDGGCSWVQ 753
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 110/403 (27%), Positives = 199/403 (49%), Gaps = 42/403 (10%)
Query: 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQI 89
++ +I G+ ++ P ++ +F +ML GVSP+ +T + KA + +LA+++
Sbjct: 212 FFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLA 271
Query: 90 AKTGY-ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
K+ + +L + NSLI +Y GD AR +FD M + VSW ++LD YA+ G++ A
Sbjct: 272 MKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGA 331
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
R+V + MPERN VSW L+ + + G+ KEA+ ++ +M G + N SVL ACA L
Sbjct: 332 RRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASL 391
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
L GR + + S + + ++LIDMY KC + +A ++F+ + Q +++ WN+
Sbjct: 392 QDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP--QKNIVCWNS 449
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328
+I G + + + E+ ELF +M + ++ ++S A ++A F ++ G
Sbjct: 450 LISGYSNNSKMVEAEELFKKMPARNVA----SWNSIISGYAQNRQFIDALKSFHAMLASG 505
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
P G++T S+L C + L++ ++V
Sbjct: 506 QSP---------------GEIT-----------------FSSVLLACASLCSLEMGKMVH 533
Query: 389 KKLVELQPDHDGRYVG--LSNVYAIFKRWDEARTTREAMETRG 429
K+++L + +VG LS++YA D ++ M R
Sbjct: 534 AKIIKLGI-KESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRN 575
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 146/325 (44%), Gaps = 35/325 (10%)
Query: 99 FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
F + ++ + GDIV AR +FDGMP + VS+ +M+D K G + A +++ P
Sbjct: 149 FAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLC 208
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD-----Q 213
+V ++A+I G+V K+AL +F EM G NE+TLVSV+ AC G D
Sbjct: 209 SVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIV 268
Query: 214 GRMMLRYMIDKGLS-----LTLPLQ----------------------TSLIDMYAKCGAI 246
G M ++DK L +TL L+ T+L+D+YA+ G +
Sbjct: 269 GLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDL 328
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ A V E + + + W ++ G KE++ L+++M G P+ F +L
Sbjct: 329 EGARRVLD--EMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLG 386
Query: 307 ACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
ACA + K + ++D + Q+ +A +P +
Sbjct: 387 ACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP-QKNIV 445
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKL 391
SL++G N+ K+ AE + KK+
Sbjct: 446 CWNSLISGYSNNSKMVEAEELFKKM 470
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 151/425 (35%), Positives = 251/425 (59%), Gaps = 15/425 (3%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
K+ + + N + WNT+I GY+++ + ++ LF KM V + LA+ GR+
Sbjct: 151 KLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQC-GRI- 208
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
E A + ++ E D+ ++I G + A ++F+ MP + SWN+M+
Sbjct: 209 --EEARRLFDRMP----ERDVISWTAMI-----AGLLDEALDLFERMPERDLPSWNTMIT 257
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV-GSKANEV 196
G + G++ AR++F MP++NV+SW+ +I G V+ G+ +EAL IF M G+K N+
Sbjct: 258 GLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQG 317
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
T VSVL AC++L L +G+ + + + + + ++LI+MY+KCG + A +F
Sbjct: 318 TFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDG 377
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
Q D++ WN +I A HG+ KE++ F EM+ G PD++T++GLLSAC+H GLV E
Sbjct: 378 MTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEE 437
Query: 317 AWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
+F L K R ++ + +HYAC+VD RAG++ EA+ FI ++ +P+A + G+LL GC
Sbjct: 438 GLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGC 497
Query: 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPG 435
H + + + KKL+E++P++ G Y+ LSN+YA +W EA R M+ +G+KK PG
Sbjct: 498 NVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPG 557
Query: 436 WSFVE 440
S++E
Sbjct: 558 CSWIE 562
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 144/296 (48%), Gaps = 24/296 (8%)
Query: 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV-SWNSMLDGYAKCGEMNMARQVFE 153
E D+ ++I Y CG I AR +FD + K +V +W +M+ GY + +++ A ++F
Sbjct: 95 EPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFN 154
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
MP +NVVSW+ +IDGY + G A+ +FE+M + N V+ +V+ A G +++
Sbjct: 155 EMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKM----PERNVVSWNTVMSMLAQCGRIEE 210
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
R + M ++ + S M A G + EAL +F + + D+ WN MI GL
Sbjct: 211 ARRLFDRMPERDV-------ISWTAMIA--GLLDEALDLFERMP--ERDLPSWNTMITGL 259
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF-KSLGKRGMVPK 332
+G ++ + +LF EM + I++ +++ C G EA F + L G P
Sbjct: 260 IQNGDLRRARKLFNEMPKKNV----ISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPN 315
Query: 333 SEHYACMVDALSR---AGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
+ ++ A S G+ + ++ I + + + ++ +L+ G+L A
Sbjct: 316 QGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTAR 371
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 133/281 (47%), Gaps = 28/281 (9%)
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELM-PERNV 160
N +I G I+ AR +FD M ++W +++ GY KCG + AR++F+ + ++NV
Sbjct: 71 NWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNV 130
Query: 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY 220
V+W+A++ GY++ +A +F EM N V+ +++ A G +D Y
Sbjct: 131 VTWTAMVGGYIRSNKISDAEKLFNEM----PNKNVVSWNTMIDGYAQNGRIDSA----MY 182
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+ +K + +++ M A+CG I+EA +F + + DV+ W AMI GL +
Sbjct: 183 LFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMP--ERDVISWTAMIAGL-----LD 235
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMV 340
E+L+LF M D ++ +++ G + A F + K+ ++ + M+
Sbjct: 236 EALDLFERMP----ERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVIS----WTTMI 287
Query: 341 DALSRAGQVTEAYEFICQM----PLEPTASMLGSLLTGCMN 377
+ G+ EA + +M +P S+L C N
Sbjct: 288 TGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSN 328
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 125/252 (49%), Gaps = 23/252 (9%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
N M+ +K G + AR++F+ M E +V++W+ +I GY+KCG +EA +F+ V +K
Sbjct: 71 NWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDR---VDAK 127
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
N VT +++ + + M +K + ++ID YA+ G I A+ +
Sbjct: 128 KNVVTWTAMVGGYIRSNKISDAEKLFNEMPNK----NVVSWNTMIDGYAQNGRIDSAMYL 183
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F + + +V+ WN ++ LA G ++E+ LF M D I++ +++ G
Sbjct: 184 FEKMP--ERNVVSWNTVMSMLAQCGRIEEARRLFDRMP----ERDVISWTAMIA-----G 232
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
L+ EA F+ + +R + + M+ L + G + A + +MP + S +++
Sbjct: 233 LLDEALDLFERMPERDL----PSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWT-TMI 287
Query: 373 TGCMNHGKLDLA 384
TGC+ G+ + A
Sbjct: 288 TGCVQEGESEEA 299
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 119/259 (45%), Gaps = 29/259 (11%)
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
+ ++++ R+ F + + NV + +I K G EA +F+EMR+ + +T +
Sbjct: 50 RTAKISIPRKDFTV--DGNVARCNWMITNLSKDGRIMEARRLFDEMRE----PDVITWTT 103
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
V+ G +++ R + + K +T T+++ Y + I +A +F+ E
Sbjct: 104 VISGYIKCGMIEEARRLFDRVDAKKNVVTW---TAMVGGYIRSNKISDAEKLFN--EMPN 158
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
+V+ WN MI G A +G + ++ LF +M + +++ ++S A G + EA
Sbjct: 159 KNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNV----VSWNTVMSMLAQCGRIEEARRL 214
Query: 321 FKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
F + +R ++ + M+ AG + EA + +MP E +++TG + +G
Sbjct: 215 FDRMPERDVIS----WTAMI-----AGLLDEALDLFERMP-ERDLPSWNTMITGLIQNGD 264
Query: 381 LDLAEIVGKKLVELQPDHD 399
L A +KL P +
Sbjct: 265 LRRA----RKLFNEMPKKN 279
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 152/412 (36%), Positives = 228/412 (55%), Gaps = 35/412 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WNT+I GY + PNK++ F +M + V D +T A R ++ HA +
Sbjct: 164 WNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLV 223
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
G+E + ++ +SLI MY AKCG++ AR+
Sbjct: 224 TNGFEINCYMGSSLISMY-------------------------------AKCGQVEDARR 252
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F+ MP+RN V W+++I GY + G KEA+ +F +M+ G K ++ T+ +V+ +C +GA
Sbjct: 253 IFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGA 312
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
LD GR + Y GL + ++ SLIDMY+KCG IK+A +F G+ K D W +I
Sbjct: 313 LDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKR--DNFSWTVII 370
Query: 271 GGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RG 328
G A +G E+L+LF +M+ G+ P+EITFLG+L++C+HGGLV + + F + G
Sbjct: 371 MGFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYG 430
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
+ P+ EHY CMVD L RA + EA +FI +MP+ P A M SLL C G++ LAE V
Sbjct: 431 IAPRIEHYGCMVDLLGRAKLLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVA 490
Query: 389 KKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+++ L+P+ G V LS VYA RW +A R + + K PG SF+E
Sbjct: 491 ERIQVLEPNKCGGDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIE 542
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 33/241 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + ++ + + W ++I GY++ ++I LF M AGV D T +
Sbjct: 245 GQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVV 304
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ G++ +L VHA G D+ + NSLI MY CGDI A ++F GM + +
Sbjct: 305 SSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNF 364
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW ++ G+A G + G EAL +F +M + G
Sbjct: 365 SWTVIIMGFAANG-----------------------LSG--------EALDLFAQMEEEG 393
Query: 191 S-KANEVTLVSVLCACAHLGALDQG-RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
NE+T + VL +C+H G ++QG R R G++ + ++D+ + + E
Sbjct: 394 GVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGRAKLLAE 453
Query: 249 A 249
A
Sbjct: 454 A 454
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%)
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+ +L + L A + ++ G + + GLS + +LI+MY+ C A V
Sbjct: 92 DNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVL 151
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313
K SD + WN +I G G ++L+ F++M + D++T L L ACA +
Sbjct: 152 DSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCM 211
Query: 314 VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+ L G + ++ ++ GQV +A MP
Sbjct: 212 MKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMP 258
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 145/415 (34%), Positives = 239/415 (57%), Gaps = 3/415 (0%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A + G ++ + +V + + + W ++ Y +++N +++ LF M R+ V PD +
Sbjct: 113 AYAACGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVI 172
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ A+H+ + + D +S +L++MY SC D+ A ++++ +
Sbjct: 173 IATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVS 232
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
K V +M+ GYAK G++ +A +F MP ++VVSWSA+I GY + EAL +F +
Sbjct: 233 EKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHD 292
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M+ G K +E+T++SV+ ACA++GAL++ R + ++ + + LP+ +LIDM++KCG+
Sbjct: 293 MQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGS 352
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
+ AL VF+ + Q +V+ W ++I AMHG + +L LF M+ GI P+ +TFLGLL
Sbjct: 353 LTLALDVFNAMP--QKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLL 410
Query: 306 SACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
AC H GLV E FK + ++ + P EHY CMVD L RA + +A + I M L P
Sbjct: 411 YACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPN 470
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
+ GSLL C HG L+L KK++EL P+H G V LSN+YA + W++ +
Sbjct: 471 VVIWGSLLAACRMHGDLELGTFAAKKILELDPNHGGAQVLLSNIYAEYGNWNDVK 525
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 149/354 (42%), Gaps = 62/354 (17%)
Query: 56 RAGV-SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114
R G+ +P P L +A A A H + G E D F+ +L+ Y +CG +
Sbjct: 61 RVGLPAPGRRALPSLLRAIAFARSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRV 120
Query: 115 VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
AR VFDGMP + V+W MLD Y + RN
Sbjct: 121 EDARRVFDGMPDRDLVAWGVMLDCYCQA---------------RN--------------- 150
Query: 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT 234
Y+EAL++F M+ ++V + +VL CAH L G+ + YM+ + +
Sbjct: 151 -YEEALLLFHSMKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSC 209
Query: 235 SLIDMYAKCGAIKEALIVFHGVEKHQ-----------------------------SDVLI 265
+L++MYA C ++ A +++ V + + DV+
Sbjct: 210 ALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVS 269
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
W+AMI G A E+L LF +MQ G+ PDEIT L ++SACA+ G + +A +
Sbjct: 270 WSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVE 329
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
M ++D S+ G +T A + MP + S++T HG
Sbjct: 330 NHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMP-QKNVVTWTSIITASAMHG 382
>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
Length = 584
Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 160/402 (39%), Positives = 227/402 (56%), Gaps = 5/402 (1%)
Query: 43 NPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGY-ESDLFIS 101
NP+ ++ LF +LR+G PD Y + R R A +HA AK G S +
Sbjct: 55 NPHLALRLFDHLLRSGADPDPAAYELAFASCARARDRATAAQLHAHAAKRGLVASHRRVR 114
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK-CGEMNMARQVFELMPERNV 160
L+H Y CG + +AR VFDG V+WN +L GYA+ G+ ++ R F MP R+
Sbjct: 115 CRLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDS 174
Query: 161 VSWSALIDGYVKCGDYKEALVIFEEM-RDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
VSW+ ++ V G+Y EA+ +F EM + + VTLVSV+ A A+LGAL G
Sbjct: 175 VSWNTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLWAHA 234
Query: 220 YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
Y+ K + + L ++LI+MY+KCG I+ A+ VF V +S + WNAM+ G +G+
Sbjct: 235 YVFRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRS-LDTWNAMLAGFTANGYS 293
Query: 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYAC 338
+ +LELFT M+ + P++ITF +L+AC+HGGLV E +F+ + + G+ P HY C
Sbjct: 294 ERALELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGC 353
Query: 339 MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398
MVD RAG +A E I MP+EP ASML +LL C H L+L + VG +L+E +
Sbjct: 354 MVDLFCRAGMFEKAEEIIQTMPMEPDASMLKALLGACRTHKNLELGKKVGHRLIEAAAND 413
Query: 399 DGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
YV LSN+YA+ W R+ M RGV K PG S VE
Sbjct: 414 HAGYVLLSNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVE 455
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 161/443 (36%), Positives = 246/443 (55%), Gaps = 44/443 (9%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
M F L +G I + KV + + W ++I GY +K+ + F +S
Sbjct: 32 MFLFGMLCLMGVIASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYF------DLS 85
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P E D+ + N++I Y G+++ AR +
Sbjct: 86 P---------------------------------ERDIVLWNTMISGYIEMGNMLEARSL 112
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD MP + +SWN++L+GYA G+M +VF+ MPERNV SW+ LI GY + G E L
Sbjct: 113 FDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVL 172
Query: 181 VIFEEMRDVGSKA-NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS-LTLPLQTSLID 238
F+ M D GS N+ T+ VL ACA LGA D G+ + +Y G + + + ++ +LID
Sbjct: 173 GSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALID 232
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MY KCGAI+ A+ VF G+++ D++ WN MI GLA HG E+L LF EM+ GI+PD+
Sbjct: 233 MYGKCGAIEIAMEVFKGIKRR--DLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDK 290
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
+TF+G+L AC H GLV + +F S+ ++P+ EH C+VD LSRAG +T+A EFI
Sbjct: 291 VTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFIN 350
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
+MP++ A + +LL + K+D+ E+ ++L++L+P + +V LSN+Y R+D+
Sbjct: 351 KMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDD 410
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
A + AM G KK G S++E
Sbjct: 411 AARLKVAMRDTGFKKEAGVSWIE 433
>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
Length = 586
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 150/421 (35%), Positives = 231/421 (54%), Gaps = 7/421 (1%)
Query: 25 NPR--IFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPDHLTYPFLAKASGRLAKREL 81
PR I+ +++++ S S +P ++ + ML A + PDH +A RL R L
Sbjct: 40 TPRRDIYIYSSLLTAISHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRL 99
Query: 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
+HA + Y D + +SL+ MY CG R+VFD M K SV W +++ GYA
Sbjct: 100 GRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYAS 159
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS- 200
G A Q+F MP RN+ +W+ALI G V G+ A+ +F EMR G + ++ ++S
Sbjct: 160 NGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSI 219
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
V+ A A L A GR + + G + + +LIDMY+KC I A VF G+
Sbjct: 220 VIGASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFR- 278
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
DV+ W M+ G A HG +E+L L+ M + G P+E+TF+GL+ AC+H GLV +
Sbjct: 279 -DVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQL 337
Query: 321 FKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
F+S+ + G+ P+ +HY C +D LSR+G + EA E + MP EP + G+LL+ C +
Sbjct: 338 FESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYK 397
Query: 380 KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
++ + KL+EL+P Y+ LSNVYA+ +WD R+ M ++K PG+S++
Sbjct: 398 DAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWI 457
Query: 440 E 440
E
Sbjct: 458 E 458
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 124/295 (42%), Gaps = 65/295 (22%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNK------------------------ 46
G+ D KV +S W ++ GY+ + +
Sbjct: 130 GSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLV 189
Query: 47 -------SISLFVKMLRAGVS-PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDL 98
++ LFV+M R GV D + AS LA L +H + G+ S++
Sbjct: 190 NTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGASADLAAFVLGRQLHGSAMRLGFLSNM 249
Query: 99 FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
+ N+LI MY C DI+ AREVF+G+ + +SW +M+ G A+ G
Sbjct: 250 IVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRA------------- 296
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
+EAL +++ M G+K NEVT V ++ AC+H G + +GR +
Sbjct: 297 ------------------EEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLF 338
Query: 219 RYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
M ++ G++ L T +D+ ++ G + EA + + ++ D W A++
Sbjct: 339 ESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTM-PYEPDEATWGALLSA 392
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 3/157 (1%)
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS-K 192
+++ YAK + A +F+ P R++ +S+L+ + AL I M +
Sbjct: 19 ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSASPELALPILRCMLSADALH 78
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ + SV A L + GR + + + + +++SL+DMY KCG+ + V
Sbjct: 79 PDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKV 138
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
F + S ++W A++ G A +G +E+L+LF M
Sbjct: 139 FDSMSAKNS--VVWTALVSGYASNGRSEEALQLFRSM 173
>gi|224115616|ref|XP_002332100.1| predicted protein [Populus trichocarpa]
gi|222874920|gb|EEF12051.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 159/420 (37%), Positives = 243/420 (57%), Gaps = 13/420 (3%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
+NT+ R Y +++ LF ML P+ T+P + KA+ + + ++H Q
Sbjct: 56 FNTLNRAYLNFGQHQQTLHLFALMLAHQTPPNSHTFPSVIKAATH-SCLFIGTSLHTQAI 114
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
G D FI SL+ MY G ++ A +VFD + V +N+ LD YAK G+M A
Sbjct: 115 NRGVLYDPFIQTSLLGMYSQFGYLLNACKVFDEISHPCIVEYNATLDAYAKNGDMGSACC 174
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM---RDVGS---KANEVTLVSVLCA 204
+F+ MP+R+VVSW+++I+G+ K G + EA+ +F EM DV K NE T VSVL +
Sbjct: 175 LFKSMPKRDVVSWTSVINGFAKNGLFGEAIRLFREMMLHDDVKCCFVKPNEATYVSVLSS 234
Query: 205 CAHL---GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
CA+L G L G+ + Y++ + +T+ + T+LID Y K G + A+ V++ +
Sbjct: 235 CANLDERGVLCIGKQIHGYIVRNEVFVTVFIGTTLIDFYGKVGCLSNAIRVYN--QMMVK 292
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
V WNA+I LA +G +++L++F +M+ G+ P+E+TF+ +L+ACA LV F
Sbjct: 293 KVCTWNAIISSLANNGREEQALDMFKKMKGEGLCPNEVTFIAVLTACARAKLVEIGLELF 352
Query: 322 KSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
+S+ G+ G+VP EHY C+VD L AG + EA EFI +MP EP AS LG+LL C HG
Sbjct: 353 QSMAGEFGLVPIMEHYGCVVDLLGMAGLLREASEFIRRMPFEPDASALGALLGACKIHGA 412
Query: 381 LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+DL VG +L+ELQP H G+YV LS+++ RW A R+ M ++ P S ++
Sbjct: 413 IDLGNEVGSRLLELQPQHCGQYVALSSIHVGVNRWGVAADIRKTMVEARIRIVPACSLID 472
>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
Length = 642
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 151/408 (37%), Positives = 224/408 (54%), Gaps = 39/408 (9%)
Query: 24 SNPR----IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKR 79
S PR + WNT+I GY + PNK++ F +M + V D +T + A R
Sbjct: 65 SAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAM 124
Query: 80 ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY 139
++ HA + G+E + +I +SL+ MY
Sbjct: 125 KVGSLCHALVVLNGFEINCYIGSSLVSMY------------------------------- 153
Query: 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLV 199
AKCG + AR+VF MPERNVV W+++I G + G +KEA+ +F +M+ G KA++ T+
Sbjct: 154 AKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIA 213
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
+V+ +C +GALD GR + Y GL L ++ SLIDMY+KCG + +A +F G+ K
Sbjct: 214 TVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFRGLTKR 273
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACAHGGLVMEAW 318
DV W MI G AM+G E+L+LF +M+ + P+E+ FLG+L+AC+HGGLV + +
Sbjct: 274 --DVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGY 331
Query: 319 YFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
+ F + K +VP+ EHY CMVD L RA + EA +FI MP+ P + SLL C
Sbjct: 332 HHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRA 391
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
G++ LAE +++ +L+P G +V LSNVYA RW + R M
Sbjct: 392 SGQVGLAEYAAERIEQLEPKRCGGHVLLSNVYATTSRWVDVNNVRTGM 439
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 140/294 (47%), Gaps = 31/294 (10%)
Query: 62 DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121
D+ + A+ R+ ++ HA K SD F+ N+LI+MY SC AR V
Sbjct: 4 DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 63
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
D P W S +VVSW+ +I GY++ G +AL
Sbjct: 64 DSAP-----RWAS------------------------DVVSWNTIIAGYIRGGMPNKALQ 94
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
F +M + +EVTL++VL ACA GA+ G + ++ G + + +SL+ MYA
Sbjct: 95 SFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYA 154
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
KCG ++EA VF+ + + +V+ W +MI G G KE+++LF +MQI G+ D+ T
Sbjct: 155 KCGMVEEARRVFNRMP--ERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATI 212
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355
++S+C G + Y G+ + ++D S+ G V +AY+
Sbjct: 213 ATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQI 266
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 124/283 (43%), Gaps = 42/283 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + +V + + + W ++I G ++S +++ LF M AGV D T +
Sbjct: 157 GMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVV 216
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ G++ +L +HA G +L + NSLI MY CGD+ A ++F G+ TK
Sbjct: 217 SSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFRGL-TK--- 272
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DV 189
R VF +W+ +I G+ G EAL +F +M +
Sbjct: 273 ------------------RDVF---------TWTVMIMGFAMNGLCVEALDLFAQMEGED 305
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT--SLIDMYAKCGAIK 247
NEV + VL AC+H G ++QG M K +L ++ ++D+ + +
Sbjct: 306 KVMPNEVIFLGVLTACSHGGLVEQGYHHFHRM-SKVYNLVPRIEHYGCMVDLLGRAKLLA 364
Query: 248 EALIVFHGVEKHQSDVLIWNAMI------GGLAMHGFVKESLE 284
EA + DV++W +++ G + + + E +E
Sbjct: 365 EAEQFIKDMPV-APDVVVWRSLLFACRASGQVGLAEYAAERIE 406
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 1/183 (0%)
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
+ A A + +LD G + L+ + +LI+MY+ C A +V + S
Sbjct: 12 ISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWAS 71
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
DV+ WN +I G G ++L+ F +M + DE+T L +L ACA G +
Sbjct: 72 DVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCH 131
Query: 322 KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
+ G + +V ++ G V EA +MP E S++ GC G+
Sbjct: 132 ALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMP-ERNVVCWTSMIAGCTQSGRF 190
Query: 382 DLA 384
A
Sbjct: 191 KEA 193
>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
Length = 803
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 149/439 (33%), Positives = 247/439 (56%), Gaps = 5/439 (1%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDH 63
S ++ G +D + + ++ I WN +I GY+++ + ++ F +ML A + PD
Sbjct: 237 SLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDE 296
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD- 122
T + A L ++ +H+ I +TG I N+LI Y G + AR + D
Sbjct: 297 FTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDK 356
Query: 123 GMPTKMSV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
+ ++V S+ ++L+GY K G+ AR+VF++M R+V++W+A+I GY + G EA+
Sbjct: 357 AVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAME 416
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+F M G + N TL +VL ACA L L G+ + I ++ + ++I +YA
Sbjct: 417 LFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYA 476
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
+ G++ A VF + + + + W +MI LA HG ++++ LF EM VG+ PD +T+
Sbjct: 477 RSGSVPLARRVFDQI-CWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTY 535
Query: 302 LGLLSACAHGGLVMEA-WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+G+ SAC H G + + Y+ + L + G+VP+ HYACMVD L+RAG +TEA+EFI +MP
Sbjct: 536 IGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMP 595
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
+ P + GSLL C DLAE+ +KL+ + PD+ G Y L+NVY+ RW++A
Sbjct: 596 VAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAAR 655
Query: 421 TREAMETRGVKKYPGWSFV 439
+ + + VKK G+S+
Sbjct: 656 IWKLRKDKAVKKETGFSWT 674
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 114/425 (26%), Positives = 196/425 (46%), Gaps = 43/425 (10%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
V + + W ++ G +++ ++ F+ M+ G++P + +
Sbjct: 119 VFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEA 178
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
R + VH+ + K G S + ++NS+++MYG CGD AR VF+ M + SWN+M+
Sbjct: 179 RGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSL 238
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS-KANEVT 197
Y G M++A +FE M ER++VSW+A+I GY + G AL F M S + +E T
Sbjct: 239 YTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFT 298
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA-------- 249
+ SVL ACA+L L G+ M Y++ G+ + + +LI YAK G+++ A
Sbjct: 299 VTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAV 358
Query: 250 -----LIVFHGVEK------------------HQSDVLIWNAMIGGLAMHGFVKESLELF 286
+I F + + + DV+ W AMI G +G E++ELF
Sbjct: 359 VADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELF 418
Query: 287 TEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDAL--- 343
M G P+ T +LSACA + + K + R + E + +A+
Sbjct: 419 RSMIRSGPEPNSHTLAAVLSACASLAYLG----YGKQIHCRAIRSLQEQSVSVSNAIITV 474
Query: 344 -SRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL--VELQPDHDG 400
+R+G V A Q+ S++ HG + A ++ +++ V ++PD
Sbjct: 475 YARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDR-V 533
Query: 401 RYVGL 405
Y+G+
Sbjct: 534 TYIGV 538
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 142/305 (46%), Gaps = 36/305 (11%)
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGD----IVYAREVFDGMP--TKMSVSWNSMLD 137
A+HA K G ++ N+L+ Y G AR +FD +P + + +WNS+L
Sbjct: 46 AIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSLLS 105
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
YAK G + AR VF MPER+ VSW+ ++ G + G + +A+ F +M G ++
Sbjct: 106 MYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFM 165
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
L +VL +CA A GR + ++I GLS +P+ S++ MY KCG + A VF ++
Sbjct: 166 LTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMK 225
Query: 258 --------------KHQ---------------SDVLIWNAMIGGLAMHGFVKESLELFTE 288
HQ ++ WNA+I G +G +L+ F+
Sbjct: 226 VRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSR 285
Query: 289 MQIV-GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347
M + PDE T +LSACA+ ++ + + GM S+ ++ +++G
Sbjct: 286 MLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSG 345
Query: 348 QVTEA 352
V A
Sbjct: 346 SVETA 350
>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1611
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 152/411 (36%), Positives = 228/411 (55%), Gaps = 34/411 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN ++ GY S + K++ L++ M +G D +T AKA+G L + +HA +
Sbjct: 1106 WNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVV 1165
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G+ DLF+++ + LD Y KCGEM AR+
Sbjct: 1166 KRGFNLDLFVTSGV-------------------------------LDMYLKCGEMESARR 1194
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
VF +P + V+W+ +I G V+ G + AL + +MR + +E T +++ AC+ L A
Sbjct: 1195 VFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTA 1254
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L+QGR + ++ + + TSL+DMYAKCG I++A +F + + WNAMI
Sbjct: 1255 LEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRR--IASWNAMI 1312
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GM 329
GLA HG KE+L+ F M+ G+ PD +TF+G+LSAC+H GLV EA+ F S+ K G+
Sbjct: 1313 VGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGI 1372
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P+ EHY+C+VDALSRAG++ EA + I MP E +ASM +LL C + + V +
Sbjct: 1373 EPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAE 1432
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
KL+ L+P YV LSNVYA +W+ + R M VKK PG+S+V+
Sbjct: 1433 KLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVD 1483
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 94/371 (25%), Positives = 168/371 (45%), Gaps = 35/371 (9%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + V ++ + WNT+I G + S S+ +FV +LR + PD T +
Sbjct: 984 GSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVL 1043
Query: 71 KASGRL-AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+A L LA +HA K G D F+S +LI
Sbjct: 1044 RACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALI------------------------ 1079
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
D Y+K G+M A +F ++ SW+A++ GY+ GD+ +AL ++ M++
Sbjct: 1080 -------DVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQES 1132
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G +++++TLV+ A L L QG+ + ++ +G +L L + + ++DMY KCG ++ A
Sbjct: 1133 GERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESA 1192
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF E D + W MI G +G + +L + +M++ + PDE TF L+ AC+
Sbjct: 1193 RRVFS--EIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACS 1250
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
+ + ++ K +VD ++ G + +A + AS
Sbjct: 1251 LLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASW-N 1309
Query: 370 SLLTGCMNHGK 380
+++ G HG
Sbjct: 1310 AMIVGLAQHGN 1320
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 88/379 (23%), Positives = 163/379 (43%), Gaps = 50/379 (13%)
Query: 24 SNPRIFYWNTVIRGYS-KSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82
+N + WN ++ + + + LF + R+ VS T + K A +
Sbjct: 720 TNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSAS 779
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA-- 140
++H K G + D+F++ +L+++Y G I AR +FDGM + V WN M+ Y
Sbjct: 780 ESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDT 839
Query: 141 --------------------------------KCGEMNMARQVFELMPER---------N 159
KC + + + F+ + +
Sbjct: 840 CLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSD 899
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
V+ W+ + +++ G+ EA+ F +M + + +T V +L A L L+ G+ +
Sbjct: 900 VIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHG 959
Query: 220 YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
++ GL + + LI+MY K G++ A VF + ++ D++ WN MI G + G
Sbjct: 960 IVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFG--QMNEVDLISWNTMISGCTLSGLE 1017
Query: 280 KESLELFTEMQIVGITPDEITFLGLLSACA--HGGLVMEAWYFFKSLGKRGMVPKSEHYA 337
+ S+ +F + + PD+ T +L AC+ GG + A K G+V S
Sbjct: 1018 ECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYL-ATQIHACAMKAGVVLDSFVST 1076
Query: 338 CMVDALSRAGQVTEAYEFI 356
++D S+ G++ EA EF+
Sbjct: 1077 ALIDVYSKRGKMEEA-EFL 1094
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 32/240 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + +V S + +P W T+I G ++ ++ + +M + V PD T+ L
Sbjct: 1187 GEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLV 1246
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA L E +HA I K D F+ SL+ MY CG+I AR +F T+
Sbjct: 1247 KACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIA 1306
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+M+ G A+ G A Q F+ M R V+
Sbjct: 1307 SWNAMIVGLAQHGNAKEALQFFKYMKSRGVM----------------------------- 1337
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
+ VT + VL AC+H G + + M G+ + + L+D ++ G I+EA
Sbjct: 1338 --PDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEA 1395
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 123/283 (43%), Gaps = 43/283 (15%)
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
L HA+I +G+ D F++N+LI MY A
Sbjct: 674 LGKRAHARILTSGHHPDRFVTNNLITMY-------------------------------A 702
Query: 141 KCGEMNMARQVFELMPE--RNVVSWSALIDGYVKCGDYK-EALVIFEEMRDVGSKANEVT 197
KCG ++ AR++F+ P+ R++V+W+A++ D + +F +R T
Sbjct: 703 KCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHT 762
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
L V C + + Y + GL + + +L+++YAK G I+EA ++F G+
Sbjct: 763 LAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMA 822
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF--LGLLSACAHGGLVM 315
DV++WN M+ E++ LF+E G PD++T L + C L +
Sbjct: 823 VR--DVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILEL 880
Query: 316 EAWYFFKSLGKRGMVPKSEHYACMV--DALSRAGQVTEAYEFI 356
+ FK+ + + + +V ALSR Q EA+E +
Sbjct: 881 KQ---FKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAV 920
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 158/419 (37%), Positives = 237/419 (56%), Gaps = 16/419 (3%)
Query: 25 NPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPFLAKASGRLAKRELAV 83
NP F T+I YS + +F +M R V+ + ++ A A+R +
Sbjct: 170 NP--FVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDL 227
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
A E D+ + N ++ Y GD+V AR++F MP + + WN++L GYA G
Sbjct: 228 AP---------ERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNG 278
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDVGSKANEVTLVSVL 202
+ +FE MPERN+ SW+ALI GY G + E L F+ M + N+ TLV+VL
Sbjct: 279 NVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVL 338
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
ACA LGALD G+ + Y GL + + +L+DMYAKCG I+ A+ VF G++ D
Sbjct: 339 SACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDT--KD 396
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
++ WN +IGGLAMH ++L LF +M+ G PD ITF+G+L AC H GLV + + +F+
Sbjct: 397 LISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQ 456
Query: 323 SLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
S+ ++ P+ EHY CMVD L+RAG++ +A F+ +MP+E + LL C + +
Sbjct: 457 SMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNV 516
Query: 382 DLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+LAE+ ++L+EL+P + YV LSN+Y RW++ + AM G KK PG S +E
Sbjct: 517 ELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIE 575
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 158/327 (48%), Gaps = 49/327 (14%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
L + Y+ ++ + +P I WN++ RGY++S++ + + LF +M + P+ T+P +
Sbjct: 83 LKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVV 142
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
K+ G++ VH + K G+ + F+ +LI MY + G + A ++F M +
Sbjct: 143 LKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNV 202
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--R 187
V+W SM++GY ++ AR++F+L PER+VV W+ ++ GY++ GD EA +F EM R
Sbjct: 203 VAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNR 262
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
DV M + KG YA G ++
Sbjct: 263 DV---------------------------MFWNTVLKG--------------YATNGNVE 281
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLS 306
+F E + ++ WNA+IGG A +G E L F M + P++ T + +LS
Sbjct: 282 ALEGLFE--EMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLS 339
Query: 307 ACAH-GGLVMEAW--YFFKSLGKRGMV 330
ACA G L + W + +S G +G V
Sbjct: 340 ACARLGALDLGKWVHVYAESSGLKGNV 366
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 135/303 (44%), Gaps = 65/303 (21%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKN-----------PNKSI----------- 48
G++ + K+ + N + +WNTV++GY+ + N P ++I
Sbjct: 247 GDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYA 306
Query: 49 --SLFVKML--------RAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDL 98
LF ++L + V P+ T + A RL +L VH +G + ++
Sbjct: 307 HNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNV 366
Query: 99 FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
++ N+L+ MY CG I A VF GM TK +SWN+++ G A M R
Sbjct: 367 YVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLA--------------MHSR 412
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
+AL +F +M++ G K + +T + +LCAC H+G ++ G
Sbjct: 413 GA-----------------DALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYF 455
Query: 219 RYMIDKGLSL-TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
+ M D L + + ++DM A+ G +++A+ + ++D +IW ++G ++
Sbjct: 456 QSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPV-EADGVIWAGLLGACRIYK 514
Query: 278 FVK 280
V+
Sbjct: 515 NVE 517
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 108/245 (44%), Gaps = 41/245 (16%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+ AQI G++ + +I+ L+ + + + YAR++FD +P WNSM GYA+
Sbjct: 57 IQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSES 116
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
Y+E + +F +M+ + + N T VL +
Sbjct: 117 -------------------------------YREVVFLFFQMKGMDIRPNCFTFPVVLKS 145
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
C + AL +G + ++I G + T+LIDMY+ G + +A +F E + +V+
Sbjct: 146 CGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIF--CEMFERNVV 203
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG--LLSACAHGGLVMEAWYFFK 322
W +MI G + S +L + ++ + P+ L ++S GG ++EA F
Sbjct: 204 AWTSMINGYIL------SADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFH 257
Query: 323 SLGKR 327
+ R
Sbjct: 258 EMPNR 262
Score = 41.2 bits (95), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 85/215 (39%), Gaps = 18/215 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + V + + WNT+I G + +++LF +M AG PD +T+ +
Sbjct: 380 GIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGIL 439
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIH------MYGSCGDIVYAREVFDGM 124
A + E A +A D I + H M G + A M
Sbjct: 440 CACTHMGLVEDGFAYFQSMA-----DDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKM 494
Query: 125 PTKMS-VSWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
P + V W +L + +A +++ EL P +N ++ L + Y G +++
Sbjct: 495 PVEADGVIWAGLLGACRIYKNVELAELALQRLIELEP-KNPANYVMLSNIYGDAGRWEDV 553
Query: 180 LVIFEEMRDVG-SKANEVTLVSVLCACAHLGALDQ 213
+ MRD G K +L+ V A +LD+
Sbjct: 554 ARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDE 588
>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Vitis vinifera]
Length = 667
Score = 273 bits (699), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 152/424 (35%), Positives = 236/424 (55%), Gaps = 4/424 (0%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPDHLTYPFLAKASGRLA 77
+ + + I WN++I GYS+ L+ KML + G+ P+ +T + +A +
Sbjct: 196 LFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTN 255
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+ VH I + E D+ NSLI +Y CG + YARE+F+ M K V++ S++
Sbjct: 256 DLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVS 315
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
GY G ++ A +F M + +W+A+I G V+ + L + +EM++ G + N VT
Sbjct: 316 GYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVT 375
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
L S+L + L G+ + Y I G + + + TS+ID YAK G ++ A VF +
Sbjct: 376 LSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFD--Q 433
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+++W A+I + HG +L LF +M G PD +TF +L+ACAH G+V EA
Sbjct: 434 SKDRSLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEA 493
Query: 318 WYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
W F + K G P EHYACMV LSRAG ++EA EFIC+MP+EP A + G+LL G
Sbjct: 494 WKIFDEMFLKYGFQPCVEHYACMVGVLSRAGMLSEAAEFICKMPIEPNAKVWGALLNGVS 553
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436
G ++L + V L ++P++ G YV ++N+Y+ RW+EA RE M+ G+KK PG
Sbjct: 554 VSGDVELGKFVCDHLFNMEPENTGNYVIMANLYSQAGRWEEAENIREKMKKIGLKKIPGT 613
Query: 437 SFVE 440
S++E
Sbjct: 614 SWIE 617
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 132/277 (47%), Gaps = 36/277 (12%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSK---NPNKSISLFVKMLRAGVSPDHLTYPFLAKA-S 73
KV + + IF WN ++ GYS + +S + + PD+ T + KA S
Sbjct: 90 KVFDKILDKNIFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALS 149
Query: 74 GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
LA V + + G++SD+F+ N+LI Y C + AR +FD M + VSWN
Sbjct: 150 VLFPDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWN 209
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
SM+ GY++ G ++++ M + G +
Sbjct: 210 SMIAGYSQGGFYEDCKELYRKM------------------------------LDSTGLRP 239
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
N VT+VSVL ACA L G + +++I++ + + + SLI +YAKCG++ A +F
Sbjct: 240 NGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELF 299
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ 290
+ E D + + +++ G HGFV ++++LF EM+
Sbjct: 300 N--EMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREMK 334
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 116/273 (42%), Gaps = 37/273 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + + + NPR+ WN VI G ++ + L +M G P+ +T +
Sbjct: 321 GFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSIL 380
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ + A+HA + GY +++++ S+I Y G + A+ VFD + +
Sbjct: 381 PTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSLI 440
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
W +++ Y+ G+ N AL +F +M G
Sbjct: 441 VWTAIISAYSAHGDAN-------------------------------AALRLFGDMLSNG 469
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
++ + VT +VL ACAH G +++ + M K G + ++ + ++ G + EA
Sbjct: 470 TQPDPVTFTAVLAACAHSGMVNEAWKIFDEMFLKYGFQPCVEHYACMVGVLSRAGMLSEA 529
Query: 250 --LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
I +E + +W A++ G+++ G V+
Sbjct: 530 AEFICKMPIEPNAK---VWGALLNGVSVSGDVE 559
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 117/251 (46%), Gaps = 8/251 (3%)
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
Y+K + A +VF+ + ++N+ SW+A++ GY + L + + S +
Sbjct: 79 YSKSNHLYEAHKVFDKILDKNIFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLKPDN 138
Query: 199 VSVLCACAHLGALDQGRMMLR----YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
++ C L L ++ + +++ G + + +LI Y++C A I+F
Sbjct: 139 FTITCVLKALSVLFPDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIARILFD 198
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLSACAHGGL 313
H D++ WN+MI G + GF ++ EL+ +M G+ P+ +T + +L ACA
Sbjct: 199 --RMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTND 256
Query: 314 VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
++ + + +R + + ++ ++ G + A E +M + + GS+++
Sbjct: 257 LVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVT-YGSIVS 315
Query: 374 GCMNHGKLDLA 384
G M HG +D A
Sbjct: 316 GYMTHGFVDKA 326
>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 997
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/424 (36%), Positives = 240/424 (56%), Gaps = 34/424 (8%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+VL +N + WN ++ GY++S + +K++ LF M + G D T + K G L
Sbjct: 479 EVLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLF 538
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
VHA K+GY+ DL++S+ + LD
Sbjct: 539 AINQGKQVHAYAIKSGYDLDLWVSSGI-------------------------------LD 567
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
Y KCG+M+ A+ F+ +P + V+W+ LI G ++ G+ + AL +F +MR +G +E T
Sbjct: 568 MYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFT 627
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+ ++ A + L AL+QGR + + + + TSL+DMYAKCG+I +A +F +E
Sbjct: 628 IATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIE 687
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
++ WNAM+ GLA HG KE+L+LF +M+ +GI PD++TF+G+LSAC+H GLV EA
Sbjct: 688 --MMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEA 745
Query: 318 WYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
+ + +S+ + G+ P+ EHY+C+ DAL RAG V EA I M +E +ASM +LL C
Sbjct: 746 YKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACR 805
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436
G + + V KL+EL+P YV LSN+YA +WDE + R M+ VKK PG+
Sbjct: 806 VQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGF 865
Query: 437 SFVE 440
S++E
Sbjct: 866 SWIE 869
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 106/226 (46%), Gaps = 29/226 (12%)
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
L HA+I + F+ N+LI MY CG + YAR VFD MP + VSWNS+L YA
Sbjct: 64 LGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYA 123
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
+ E G V+ + KEA ++F +R + +TL
Sbjct: 124 QSSE------------------------GVVE--NVKEAFLLFRILRQDVVYTSRMTLSP 157
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
+L C H G + Y GL + +L+++Y K G +KE ++F E
Sbjct: 158 MLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFE--EMPY 215
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
DV++WN M+ GF +E+++L + G+ P+EIT L LLS
Sbjct: 216 RDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEIT-LRLLS 260
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 154/358 (43%), Gaps = 36/358 (10%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
I N ++ GY + + + F+ M+ + + D +T+ + + RL L VH
Sbjct: 287 IISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHC 346
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
K G + L +SNSLI+MY K ++ +
Sbjct: 347 MALKLGLDLMLTVSNSLINMY-------------------------------CKLRKIGL 375
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
AR VF M ER+++SW+++I G + EA+ +F ++ G K + T+ SVL A +
Sbjct: 376 ARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASS 435
Query: 208 LG-ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
L L + + + I + T+LID Y++ +KEA ++F ++ D++ W
Sbjct: 436 LPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFG---RNNFDLVAW 492
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
NAM+ G ++LELF M G D+ T +L C + + K
Sbjct: 493 NAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIK 552
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
G + ++D + G ++ A +P+ P +L++GC+ +G+ + A
Sbjct: 553 SGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTLISGCIENGEEERA 609
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/411 (22%), Positives = 166/411 (40%), Gaps = 79/411 (19%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPFLAKASG-- 74
++L+ NP F N +I YSK + + +F KM R VS + + + + G
Sbjct: 71 RILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVV 130
Query: 75 ----------RLAKREL-----------------------AVAVHAQIAKTGYESDLFIS 101
R+ ++++ + + H K G + D F++
Sbjct: 131 ENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVA 190
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG------EMNMARQVFELM 155
+L+++Y G + R +F+ MP + V WN ML Y + G +++ A L
Sbjct: 191 GALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLH 250
Query: 156 PER--------------------------------NVVSWSALIDGYVKCGDYKEALVIF 183
P ++S + ++ GY+ G Y L F
Sbjct: 251 PNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCF 310
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
+M + + ++VT + VL L +L G+ + + GL L L + SLI+MY K
Sbjct: 311 MDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKL 370
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
I A VF+ + + D++ WN++I G+A E++ LF ++ G+ PD T
Sbjct: 371 RKIGLARTVFNNMS--ERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTS 428
Query: 304 LLSACAH--GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352
+L A + GL + ++ K V S ++DA SR + EA
Sbjct: 429 VLKAASSLPEGLSLSKQIHVHAI-KTNNVADSFVSTALIDAYSRNRCMKEA 478
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG-----FVKESLELF 286
L +LI MY+KCG++ A VF + + D++ WN+++ A VKE+ LF
Sbjct: 83 LVNNLISMYSKCGSLTYARRVFDKMP--ERDLVSWNSILAAYAQSSEGVVENVKEAFLLF 140
Query: 287 TEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA 346
++ + +T +L C H G V + F K G+ +V+ +
Sbjct: 141 RILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKF 200
Query: 347 GQVTEAYEFICQMP 360
G+V E +MP
Sbjct: 201 GKVKEGRVLFEEMP 214
>gi|449516814|ref|XP_004165441.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like isoform 1 [Cucumis sativus]
Length = 703
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/430 (35%), Positives = 236/430 (54%), Gaps = 1/430 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + ++ + +F W +I G+ + K K++ L+ M ++ + P+ + L
Sbjct: 273 GLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLL 332
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G+ E H+ I K G+ FI ++I Y +C I A +
Sbjct: 333 SACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAYLQYQMSDKSHLT 392
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
S N M+ G+ K G ++ ARQ+F++MPE++V SWS +I GY + AL +F M D
Sbjct: 393 SSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVALDLFHGMIDSK 452
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ NE+T+VSV A A LG L +GR Y+ +K + L L ++IDMYAKCG+I AL
Sbjct: 453 VEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAIIDMYAKCGSIDTAL 512
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF ++ S V WNA+I GLAMHG SLE+F+ +Q I + ITFLG+LSAC H
Sbjct: 513 DVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRRSIKLNSITFLGVLSACCH 572
Query: 311 GGLV-MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV + YF+ + G+ P +HY C+VD L R G++ EA E + MP++ + G
Sbjct: 573 AGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVGRLREAEEIVRTMPMKADVVIWG 632
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL HG++++ E + L LQP H V LSN+YA W++A R A++++
Sbjct: 633 TLLASSRTHGEVEIGERAAENLARLQPSHGPGRVLLSNLYADAGLWEDAALVRRAIQSQR 692
Query: 430 VKKYPGWSFV 439
+ + PG+S V
Sbjct: 693 MIRSPGYSGV 702
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 183/384 (47%), Gaps = 30/384 (7%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
+ T+I G +++ ++I +F M AGV+P+ +T + A + +HA +
Sbjct: 161 YTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVI 220
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K + + IS +L+HMY + + +F+ MP + +VSWN ML GY K G ++ AR+
Sbjct: 221 KLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARE 280
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+FE +PER+V SW+ +IDG+V+ ++AL+++ MR NEV +V +L AC +
Sbjct: 281 LFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVS 340
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH----------- 259
+++GR ++ G +Q ++I YA C I A + + +K
Sbjct: 341 IEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVG 400
Query: 260 ------------------QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
+ DV W+ MI G A + +L+LF M + P+EIT
Sbjct: 401 FTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVALDLFHGMIDSKVEPNEITM 460
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+ + SA A G + E + + + + + A ++D ++ G + A + Q+
Sbjct: 461 VSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAIIDMYAKCGSIDTALDVFRQIKD 520
Query: 362 E-PTASMLGSLLTGCMNHGKLDLA 384
+ T S +++ G HG +L+
Sbjct: 521 KTSTVSPWNAIICGLAMHGHANLS 544
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 108/406 (26%), Positives = 182/406 (44%), Gaps = 39/406 (9%)
Query: 26 PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD-HLTYPFLAKASGRLAKRELAVA 84
P W + S P +++S F+ + S D L+ K +
Sbjct: 23 PLYLKWVSTFSTIESSPRPLQNLSSFLNGRPSSSSLDCELSVVSALKYCASSSAISSGQQ 82
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+HA + K G+ S+ FI NSLI+MY CG + AR +FD SVS N M+ GY K +
Sbjct: 83 IHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLDSVSCNIMMSGYVKLRQ 142
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
+ ARQ+F MPER VS++ +I G + + EA+ +F++MR G NEVT+ SV+ A
Sbjct: 143 LENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMASVMSA 202
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM------------------------- 239
C+H+G + RM+ +I + + T+L+ M
Sbjct: 203 CSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVSW 262
Query: 240 ------YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
Y K G + +A +F + + DV W MI G ++++L L++ M+
Sbjct: 263 NVMLKGYVKSGLVDQARELFERIP--ERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSD 320
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAY 353
+ P+E+ + LLSAC + E F + K G V A ++ + ++ AY
Sbjct: 321 LHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAY 380
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399
QM + + ++ G +G +D A +++ ++ P+ D
Sbjct: 381 -LQYQMSDKSHLTSSNVMIVGFTKNGMIDQA----RQIFDMMPEKD 421
>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 760
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/439 (33%), Positives = 246/439 (56%), Gaps = 11/439 (2%)
Query: 11 GNIDYSCKVLSHLSN----PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
G ++ ++LS + P I WN ++ G+++S +++ +F KM G PD +T
Sbjct: 196 GCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTV 255
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ + G + +H + K G D + ++++ MYG G + ++FD
Sbjct: 256 SSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEM 315
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPER----NVVSWSALIDGYVKCGDYKEALVI 182
+ N+ + G ++ G ++ A ++F L E+ NVVSW+++I G + G EAL +
Sbjct: 316 METGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALEL 375
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F EM+ G K N VT+ S+L AC ++ AL GR + + L + + ++LIDMYAK
Sbjct: 376 FREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAK 435
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG IK + IVF+ + +++ WN+++ G +MHG KE + +F + + PD I+F
Sbjct: 436 CGRIKMSQIVFNMMPT--KNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFT 493
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
LLSAC GL E W +F + + G+ P+ EHY+CMV+ L RAG++ EAY+ I ++P
Sbjct: 494 SLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPF 553
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
EP + + G+LL C +DLAEI +KL L+P++ G YV +SN+YA W E +
Sbjct: 554 EPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSI 613
Query: 422 REAMETRGVKKYPGWSFVE 440
R ME+ G+KK PG S+++
Sbjct: 614 RNKMESLGLKKNPGCSWIQ 632
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 196/376 (52%), Gaps = 9/376 (2%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
+L + +P ++ ++++I +K+K ++SI +F +M G+ PD P L K L+
Sbjct: 72 ILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSA 131
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
+ +H +G + D F+ SL HMY CG + AR+VFD M K V+ +++L G
Sbjct: 132 FKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCG 191
Query: 139 YAKCGEMNMARQVFELMP----ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
YA+ G + ++ M E N+VSW+ ++ G+ + G +KEA+++F++M +G +
Sbjct: 192 YARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPD 251
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
+VT+ SVL + L+ GR + Y+I +GL + ++++DMY K G + + +F
Sbjct: 252 QVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFD 311
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
E ++ V NA I GL+ +G V ++LE+F + + + +++ +++ CA G
Sbjct: 312 EFEMMETGVC--NAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKD 369
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDA---LSRAGQVTEAYEFICQMPLEPTASMLGSL 371
+EA F+ + G+ P M+ A ++ G + F ++ L + +L
Sbjct: 370 IEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSAL 429
Query: 372 LTGCMNHGKLDLAEIV 387
+ G++ +++IV
Sbjct: 430 IDMYAKCGRIKMSQIV 445
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 33/246 (13%)
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
HA+I K+G ++D +IS LI Y + +N D
Sbjct: 38 HARILKSGAQNDGYISAKLIASYSN---------------------YNCFND-------- 68
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
A + + +P+ V S+S+LI K + +++ +F M G + L ++ C
Sbjct: 69 --ADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVC 126
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
A L A G+ + GL + +Q SL MY +CG + +A VF + + DV+
Sbjct: 127 AELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMS--EKDVVT 184
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
+A++ G A G ++E + + +EM+ GI P+ +++ G+LS G EA F+ +
Sbjct: 185 CSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMH 244
Query: 326 KRGMVP 331
G P
Sbjct: 245 HLGFCP 250
>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/433 (35%), Positives = 241/433 (55%), Gaps = 5/433 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFL 69
G + + + + I WN++I GYS+ +++++F KML + PD+ T +
Sbjct: 222 GQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASI 281
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM- 128
A L K + +HA I + E+ + N+LI MY G + AR + + T
Sbjct: 282 LSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNL 341
Query: 129 -SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+++ S+LDGY K G + AR++F + +R+VV+W+A+I GYV+ G + +AL +F M
Sbjct: 342 NIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMV 401
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
+ G + N TL ++L + L L+ G+ + I G S T + +LI MYAK G I
Sbjct: 402 NEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNIN 461
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VF + + +++ W +MI LA HG KE++ LF M VG+ PD IT++G+LSA
Sbjct: 462 VAKRVF-DLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSA 520
Query: 308 CAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C H GLV + ++ + + + P HYACM+D RAG + EAY FI MP+EP
Sbjct: 521 CTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNI 580
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
GSLL C H DLA++ ++L+ + P + G Y+ L+NVY+ +W+ A TR+ M+
Sbjct: 581 AWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMK 640
Query: 427 TRGVKKYPGWSFV 439
RGV+K G S++
Sbjct: 641 DRGVRKEKGISWI 653
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 170/335 (50%), Gaps = 5/335 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN + S ++L + + W +I GY++ + +I +F KM+ V P T +
Sbjct: 90 GNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVL 149
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ ++ +H+ + K G S + ++ SL++MY CGD V A+ VFD M K
Sbjct: 150 SSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNIS 209
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WN+++ Y + G+ +A FE MP+R++VSW+++I GY + G EAL IF +M +
Sbjct: 210 TWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEP 269
Query: 191 S-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
S K + TL S+L ACA+L L+ G+ + Y++ + + +LI MYAK G ++ A
Sbjct: 270 SLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIA 329
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
++ +++ + +++ G G VK + E+F +++ D + + ++
Sbjct: 330 RLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLR----DRDVVAWTAMIVGYV 385
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS 344
GL +A F+ + G P S A M+ S
Sbjct: 386 QNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSS 420
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 142/275 (51%), Gaps = 30/275 (10%)
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ + + S R+ +VH QI K G +++ N+L+ Y G + +A VFD MP
Sbjct: 13 FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
K + SWN+++ GYAK G ++R++ MP+ + VSW+A+I GY + G + A+ +F +
Sbjct: 73 LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M ++ T+ +VL +CA LD GR + +++ GL +P+ TSL++MYAKCG
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192
Query: 246 IKEALIVFHGV----------------------------EK-HQSDVLIWNAMIGGLAMH 276
A +VF + EK D++ WN+MI G +
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252
Query: 277 GFVKESLELFTEM-QIVGITPDEITFLGLLSACAH 310
G+ E+L +F++M + PD T +LSACA+
Sbjct: 253 GYNLEALAIFSKMLNEPSLKPDNFTLASILSACAN 287
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 131/283 (46%), Gaps = 40/283 (14%)
Query: 1 MLSFSAL----SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR 56
+++F++L + LGN+ + ++ + L + + W +I GY ++ N ++ LF M+
Sbjct: 343 IIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVN 402
Query: 57 AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
G P+ T + S L E +HA K G S ++N+LI MY G+I
Sbjct: 403 EGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINV 462
Query: 117 AREVFDGMPT--KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
A+ VFD +P K VSW SM+ M +A+ G
Sbjct: 463 AKRVFD-LPNGKKEIVSWTSMI--------MALAQH-----------------------G 490
Query: 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQ 233
KEA+ +FE M VG K + +T V VL AC H+G ++QGR M + + TL
Sbjct: 491 LGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHY 550
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ID+Y + G ++EA + + + D + W +++ +H
Sbjct: 551 ACMIDLYGRAGLLQEAYLFIESMPI-EPDNIAWGSLLASCKIH 592
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 13/184 (7%)
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
GR + +I KGL L + L +L+ YAK G+++ A VF E WN +I G
Sbjct: 29 GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFD--EMPLKSTFSWNTLISGY 86
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA-WYFFKSLGKRGMVPK 332
A G + S L EM D +++ ++ GL A W F K + +R VP
Sbjct: 87 AKQGNFEVSRRLLYEMP----DCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISER--VPP 140
Query: 333 SEHYACMVDALSRAGQVTE----AYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
S+ V + A Q + + F+ ++ L + SLL G +A++V
Sbjct: 141 SQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVF 200
Query: 389 KKLV 392
++
Sbjct: 201 DRMT 204
>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 654
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 151/431 (35%), Positives = 249/431 (57%), Gaps = 4/431 (0%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFLA 70
++D S KV ++ + WN++I GYS+ +L+ +M+ +G P+ +T +
Sbjct: 176 DLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVL 235
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+A G+ + VH I E D+ + N+LI +Y CG + YARE+FD M K V
Sbjct: 236 QACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEV 295
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
++ +++ G G ++ + ++F M + + +W+A+I G V+ ++ L + EM+ +G
Sbjct: 296 TYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALG 355
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ N VTL SVL A+ +L G+ + Y I G + + T++IDMYAK G ++ A
Sbjct: 356 FRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQ 415
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + ++IW A+I A+HG +L LF EM GI PD +TF +L+ACAH
Sbjct: 416 RVFD--QSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAH 473
Query: 311 GGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
G+V +AW F+S+ K+ G+ P EHYAC+V AL +A +++EA EF+ +MP+EP+A + G
Sbjct: 474 CGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPSAKVWG 533
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL G ++L + V L E++P++ G YV ++N+Y+ RW EA RE M G
Sbjct: 534 ALLHGASISSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEADEVRERMNKVG 593
Query: 430 VKKYPGWSFVE 440
++K PG S++E
Sbjct: 594 LQKIPGSSWIE 604
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 152/311 (48%), Gaps = 36/311 (11%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFLAKASGRLA 77
V + + F +N ++ YS ++ LF + + V+ +T + +S L+
Sbjct: 81 VFDQIPHKNTFSYNAMLISYSLHNRHGDALDLFSSLASSNLVNNISITCLLKSLSSFTLS 140
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+L VH + +TG+++D+F+ N+LI Y C D+ +R+VFD M + VSWNSM+
Sbjct: 141 DVKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMIS 200
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV-GSKANEV 196
GY++ G Y++ ++ EM D G + N V
Sbjct: 201 GYSQGGL-------------------------------YEDCKTLYREMVDFSGFRPNGV 229
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
T+VSVL AC L G + ++++D + + + + +LI +YAKCG++ A +F
Sbjct: 230 TVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFD-- 287
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
E + D + + A+I GL +HG+V +SLELF M+ ++ GL+ H G V++
Sbjct: 288 EMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEG-VLD 346
Query: 317 AWYFFKSLGKR 327
++LG R
Sbjct: 347 LVREMQALGFR 357
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 114/250 (45%), Gaps = 13/250 (5%)
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
Y+K + AR VF+ +P +N S++A++ Y + +AL +F + + +N V
Sbjct: 69 YSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLHNRHGDALDLFSSL----ASSNLVNN 124
Query: 199 VSVLCACAHLGA-----LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+S+ C L + + G+ + +++ G + ++ +LI Y+KC + + VF
Sbjct: 125 ISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVF 184
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLSACAHGG 312
+ K DV+ WN+MI G + G ++ L+ EM G P+ +T + +L AC
Sbjct: 185 DRMTKR--DVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQ 242
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
+ K + + ++ ++ G + A E +M E G+++
Sbjct: 243 DLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMS-EKDEVTYGAII 301
Query: 373 TGCMNHGKLD 382
+G M HG +D
Sbjct: 302 SGLMLHGYVD 311
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 89/220 (40%), Gaps = 31/220 (14%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S L G +D S ++ + + WN VI G ++ + L +M G P+ +
Sbjct: 302 SGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAV 361
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T + + + +H+ K GY +++++ ++I MY G + A+ VFD
Sbjct: 362 TLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQS 421
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ V W +++ YA G+ N+ AL +F
Sbjct: 422 KDRSLVIWTAIISAYAVHGDANL-------------------------------ALGLFH 450
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK 224
EM G + + VT +VL ACAH G +D+ + M K
Sbjct: 451 EMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIFESMFKK 490
>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Glycine max]
Length = 522
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/446 (34%), Positives = 247/446 (55%), Gaps = 12/446 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKS-ISLFVKMLRAGV 59
++ F L+ L N+ Y+ + H+ + + +I Y+ + S +SLF MLR+
Sbjct: 44 LIRFCTLT-LSNLTYARLIFDHIPSLNTHLFTAMITAYAAHPATHPSALSLFRHMLRSQP 102
Query: 60 S-PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSC-GDIVYA 117
P+H +P K E ++HAQI K+G+ + +L+ Y G + A
Sbjct: 103 PRPNHFIFPHALKTCPESCAAE---SLHAQIVKSGFHEYPVVQTALVDSYSKVSGGLGNA 159
Query: 118 REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
++VFD M + VS+ +M+ G+A+ G++ A +VF M +R+V SW+ALI G + G +
Sbjct: 160 KKVFDEMSDRSVVSFTAMVSGFARVGDVESAVRVFGEMLDRDVPSWNALIAGCTQNGAFT 219
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
+ + +F M ++ N VT+V L AC H+G L GR + Y+ GL+ + +L+
Sbjct: 220 QGIELFRRMVFECNRPNGVTVVCALSACGHMGMLQLGRWIHGYVYKNGLAFDSFVLNALV 279
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG--IT 295
DMY KCG++ +A VF + + WN+MI A+HG ++ +F +M G +
Sbjct: 280 DMYGKCGSLGKARKVFE--MNPEKGLTSWNSMINCFALHGQSDSAIAIFEQMVEGGGGVR 337
Query: 296 PDEITFLGLLSACAHGGLVMEA-WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYE 354
PDE+TF+GLL+AC HGGLV + WYF + + G+ P+ EHY C++D L RAG+ EA +
Sbjct: 338 PDEVTFVGLLNACTHGGLVEKGYWYFEMMVQEYGIEPQIEHYGCLIDLLGRAGRFDEAMD 397
Query: 355 FICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414
+ M +EP + GSLL GC HG+ DLAE KKL+E+ P + G + L+NVY +
Sbjct: 398 VVKGMSMEPDEVVWGSLLNGCKVHGRTDLAEFAAKKLIEIDPHNGGYRIMLANVYGELGK 457
Query: 415 WDEARTTREAMETRGVKKYPGWSFVE 440
WDE R ++ + K PG S++E
Sbjct: 458 WDEVRNVWRTLKQQKSYKVPGCSWIE 483
>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
Length = 605
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 156/442 (35%), Positives = 243/442 (54%), Gaps = 9/442 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+LSF A + Y+ ++L+H +P +N + + LR
Sbjct: 43 LLSFLARDPDSHFPYASRLLAHHPDPHPALFNPLFSALPTRHAARLLALMLSLPLR---- 98
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PDH T+P + ++ L L +HA + K G+ + N+L+ Y + A V
Sbjct: 99 PDHFTFPQILPSAQPL---HLVAQLHALLLKLGFHAHTQSLNALLAAYLANARPDLASRV 155
Query: 121 FDGMPTKMSV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
F G + V SW +M+ G K G + AR +F+ MPERN+VSW+A++ GYVK + +A
Sbjct: 156 FRGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDA 215
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F+EMR G N + + AC GAL +GR + R++ G+ + L T+++DM
Sbjct: 216 LEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDM 275
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y KCG ++EA VF + + WN MIGG A+HG +++L+LF M+ G+ PD++
Sbjct: 276 YCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDV 335
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
T + +L+ACAH G++ E ++F + +R G+ PK EHY CMVD RAG++ EA + I
Sbjct: 336 TLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQD 395
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
MP+EP +LG+L HG +DL E +G +++EL P + GRYV L+N+ A RW++
Sbjct: 396 MPMEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDV 455
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R M+ R V K G S +E
Sbjct: 456 ARVRRLMDERNVSKEAGRSVIE 477
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/431 (33%), Positives = 236/431 (54%), Gaps = 34/431 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + ++ + L+ + W +I G +S + LF++M + P+ +T L
Sbjct: 246 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLI 305
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
G +L +HA I + G+ L ++ +L+ MYG
Sbjct: 306 VECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYG--------------------- 344
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
KC ++ AR +F+ R+V+ W+A++ Y + +A +F++MR G
Sbjct: 345 ----------KCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG 394
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ +VT+VS+L CA GALD G+ + Y+ + + + L T+L+DMYAKCG I A
Sbjct: 395 VRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAG 454
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F +E D+ +WNA+I G AMHG+ +E+L++F EM+ G+ P++ITF+GLL AC+H
Sbjct: 455 RLF--IEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSH 512
Query: 311 GGLVMEAWYFF-KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E F K + G+VP+ EHY CMVD L RAG + EA+E I MP++P + G
Sbjct: 513 AGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWG 572
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+L+ C H L E+ +L+E++P++ G V +SN+YA RW +A R+ M+T G
Sbjct: 573 ALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVG 632
Query: 430 VKKYPGWSFVE 440
+KK PG S +E
Sbjct: 633 MKKEPGHSVIE 643
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 171/367 (46%), Gaps = 32/367 (8%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
++Y+ V + + W+T+IR S++K + ++ L +M V P + +
Sbjct: 145 VEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNL 204
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
A + A+HA + + HM G+PT
Sbjct: 205 FADTANMRMGKAMHAYVIRNSNNE---------HM---------------GVPTT----- 235
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
++LD YAKCG + +ARQ+F + ++ VVSW+A+I G ++ +E +F M++
Sbjct: 236 TALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIF 295
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
NE+T++S++ C GAL G+ + Y++ G S++L L T+L+DMY KC I+ A +
Sbjct: 296 PNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARAL 355
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F + DV+IW AM+ A + ++ LF +M+ G+ P ++T + LLS CA G
Sbjct: 356 FDSTQNR--DVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAG 413
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
+ + + K + +VD ++ G + A + + M +++
Sbjct: 414 ALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIE-AISRDICMWNAII 472
Query: 373 TGCMNHG 379
TG HG
Sbjct: 473 TGFAMHG 479
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 163/357 (45%), Gaps = 69/357 (19%)
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
P + KA G+++ +L +H + K G + D+F+ N+L+ MYG C + YA
Sbjct: 98 PSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYA--------- 148
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
R VF+ M ER+VVSWS +I + ++ AL + EM
Sbjct: 149 ----------------------RLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREM 186
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS--LTLPLQTSLIDMYAKCG 244
+ + +EV +VS++ A + G+ M Y+I + + +P T+L+DMYAKCG
Sbjct: 187 NFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCG 246
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+ A +F+G+ Q V+ W AMI G ++E +LF MQ I P+EIT L L
Sbjct: 247 HLGLARQLFNGLT--QKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSL 304
Query: 305 LSACAHGGLV-----MEAWY----FFKSL----------GK-------RGMVPKSEH--- 335
+ C G + + A+ F SL GK R + +++
Sbjct: 305 IVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDV 364
Query: 336 --YACMVDALSRAGQVTEAYEFICQMP---LEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ M+ A ++A + +A+ QM + PT + SLL+ C G LDL + V
Sbjct: 365 MIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWV 421
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/437 (35%), Positives = 239/437 (54%), Gaps = 37/437 (8%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTY 66
S G + ++ KV + + WN++I GY+K+ +++ +F +M R G PD ++
Sbjct: 162 SRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSL 221
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A G L EL V + + G + +I ++LI MY
Sbjct: 222 VSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMY------------------ 263
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
AKCG++ AR++F+ M R+V++W+A+I GY + G EA+ +F M
Sbjct: 264 -------------AKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAM 310
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
++ N++TL +VL ACA +GALD G+ + Y +G + + T+LIDMYAKCG++
Sbjct: 311 KEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSL 370
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM--QIVGITPDEITFLGL 304
A VF E Q + WNAMI LA HG KE+L LF M + G P++ITF+GL
Sbjct: 371 ASAQRVFK--EMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGL 428
Query: 305 LSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LSAC H GLV E + F + G+VPK EHY+CMVD L+RAG + EA++ I +MP +P
Sbjct: 429 LSACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKP 488
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
LG+LL C + +D+ E V + ++E+ P + G Y+ S +YA W+++ R
Sbjct: 489 DKVTLGALLGACRSKKNVDIGERVIRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRL 548
Query: 424 AMETRGVKKYPGWSFVE 440
M +G+ K PG S++E
Sbjct: 549 LMRQKGITKTPGCSWIE 565
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/425 (35%), Positives = 236/425 (55%), Gaps = 38/425 (8%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V + + W VI GY ++ ++++ LF LR V P+ T+ + A GR
Sbjct: 90 RVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLF---LRMDVEPNAATFVSVLVACGRKG 146
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+ +H K+ + L +SN+L+ MY
Sbjct: 147 YLSVGKGIHGLSFKSAFGVGLEVSNALMDMY----------------------------- 177
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
KCG + A+QVF+ + E+++VSW+++I G V+C KEAL +F++M+ G + + +
Sbjct: 178 --VKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGII 235
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
L SVL ACA LGALD GR + ++ K + + + T+++DMYAKCG I+ ++ +F+G+
Sbjct: 236 LTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMP 295
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+VL WNA++ GLAMHG + LELF EM VG+ P+E+TFL +L+AC H GLV E
Sbjct: 296 --HKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEG 353
Query: 318 WYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
+F + + + P+ EHY CMVD L RA + EA E MP+ P ++G+LL+ C
Sbjct: 354 RQYFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSAC 413
Query: 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPG 435
+G +L + + + VEL G YV LSN++AI +RWD+ R M+ +G+KK PG
Sbjct: 414 KENGNTELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPG 473
Query: 436 WSFVE 440
+ +E
Sbjct: 474 STVIE 478
>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
Length = 1796
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/430 (33%), Positives = 243/430 (56%), Gaps = 5/430 (1%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S + G ++ + ++ SN + WN++I GY + +++ LF M R GV D+
Sbjct: 247 SGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYS 306
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T+ + A L + + VHA + K G+ +D+ I ++L+ MY C A ++F +
Sbjct: 307 TFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDL 366
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
++ NSM+ Y+ CG ++ ARQ+F+ MP ++++SW+++I G+ + EAL +F
Sbjct: 367 QAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFC 426
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
EM +G + ++ +L V+ ACA + +L+ G + GL + TSL+D Y KCG
Sbjct: 427 EMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCG 486
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
++ +F + K SD + WN+M+ G A +G E+L +F +M+ VG+ P +ITF+G+
Sbjct: 487 LVEHGRKLFDRMMK--SDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGV 544
Query: 305 LSACAHGGLVMEA--WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
LSAC H GLV E W++ L + P EHY+CMVD +RAG + +A I QMPL+
Sbjct: 545 LSACDHCGLVEEGRKWFYAMKLDYH-INPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLK 603
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
SM S+L GC+ HG L + V K++++L P++ G YV LS +YA F+ W + R
Sbjct: 604 ADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQVR 663
Query: 423 EAMETRGVKK 432
+ M + + K
Sbjct: 664 KLMYDKKIPK 673
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 155/506 (30%), Positives = 237/506 (46%), Gaps = 77/506 (15%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A G ++ + V + + WNT+I GY + + F +M +AG+ P T
Sbjct: 785 AFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFT 844
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYE-SDLFISNSLIHMYGSCGDIVYAREVFDGM 124
Y L + + +HA + + G + S++ + NSLI MYG G + YA VF M
Sbjct: 845 YSTLLSFVSSACRGK---QIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITM 901
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELM------PERNVVSW--------------- 163
+SWNS++ K G N+A + F LM P++ VS
Sbjct: 902 EELDIISWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGE 961
Query: 164 ------------------SALIDGYVKCGDYKEALVIFEEMRDVGS-------------- 191
SA ID + KC ++++ +FEE+ S
Sbjct: 962 QIFALCIRVGFLSNSIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHG 1021
Query: 192 -----------------KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT 234
+ E TL VL A + L +DQG + ++ GL + + +
Sbjct: 1022 FGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVAS 1081
Query: 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
SL++MYAK G I A+ F + D++ WN MI GLA +G V ++LE+F E+ I G
Sbjct: 1082 SLVEMYAKFGLIDSAMKTFAKIGAR--DLISWNTMIMGLAYNGRVSKALEIFKELLIGGP 1139
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAY 353
PDEIT G+L AC GGLV E F S+ K G++P EHYAC+VD +SR G++ EA
Sbjct: 1140 PPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAM 1199
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413
+ + MP EP+ + GSLL C +G L E V ++++EL+P Y+ L+ Y +
Sbjct: 1200 DIVELMPHEPSGLIWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPYLVLAQAYEMRG 1259
Query: 414 RWDEARTTREAMETRGVKKYPGWSFV 439
RW+ AM+ +GV+K G S++
Sbjct: 1260 RWESLVRVXRAMKEKGVRKVIGCSWI 1285
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 168/340 (49%), Gaps = 38/340 (11%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP--- 61
S + GN++ + ++ + + WN++I GY+ + P +++ LF + ++P
Sbjct: 112 SGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDL---SLNPLER 168
Query: 62 ---DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
D + A L + +HA+I E D + +SL+++YG CGDI A
Sbjct: 169 FCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSAN 228
Query: 119 EVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178
V + M + S ++++ GYA CG MN AR++F L VV W+++I GYV + E
Sbjct: 229 HVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALE 288
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
AL +F MR G + + T SVL AC+ LG +DQG + ++ G + + + ++L+D
Sbjct: 289 ALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVD 348
Query: 239 MYAKCGAIKEALIVFHGVEKHQS-----------------------------DVLIWNAM 269
MY+KC +A +F ++ + + ++ WN+M
Sbjct: 349 MYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSM 408
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
I G + + E+L+LF EM +G+ D+ + G++SACA
Sbjct: 409 IVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACA 448
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 157/326 (48%), Gaps = 39/326 (11%)
Query: 97 DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP 156
+ F N++I Y G + E+FD MP K + SWN ++ G+AK G + +AR++F MP
Sbjct: 72 NCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMP 131
Query: 157 ERNVVSWSALIDGYVKCGDYKEALVIFEEM------RDVGSKANEVTLVSVLCACAHLGA 210
+N ++W+++I GY G KEA+ +F+++ R G + L +V+ AC +LGA
Sbjct: 132 WKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCG---DTFVLATVVGACTNLGA 188
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE------------- 257
LD G+ + ++ + L +SL+++Y KCG I A V + ++
Sbjct: 189 LDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISG 248
Query: 258 ----------------KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
K V++WN+MI G + E+LELF M+ G+ D TF
Sbjct: 249 YASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTF 308
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+LSAC+ G++ + + K G + +VD S+ + +A + +
Sbjct: 309 ASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQA 368
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIV 387
T +L S++T N G++D A +
Sbjct: 369 YDTI-LLNSMITVYSNCGRIDDARQI 393
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 136/265 (51%), Gaps = 6/265 (2%)
Query: 89 IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
+ K G+ + F+ N + +Y G + VF+ + K +SWN L + + GE+ A
Sbjct: 736 LIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERA 795
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
R VF+ MP+R+VVSW+ +I GYV G + +A F EM+ G + + T ++L + +
Sbjct: 796 RDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLL---SFV 852
Query: 209 GALDQGRMMLRYMIDKGLSLT-LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
+ +G+ + MI G+ L+ + + SLI MY K G + A VF +E + D++ WN
Sbjct: 853 SSACRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITME--ELDIISWN 910
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327
++I G+ +L F M+ VG +PD+ T +++ C++ + + F +
Sbjct: 911 SLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRV 970
Query: 328 GMVPKSEHYACMVDALSRAGQVTEA 352
G + S + +D S+ ++ ++
Sbjct: 971 GFLSNSIVSSASIDLFSKCNRLEDS 995
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 23/213 (10%)
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKG-LSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
+L L +C + G++ +GR + + G L L + L+ MY++C +++EA +F
Sbjct: 8 SLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEE 67
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
+ K + WN MI G G +SLELF M D ++ ++S A G +
Sbjct: 68 MPKR--NCFSWNTMIEGYLKSGSKGKSLELFDSMP----HKDAFSWNVVISGFAKEGNLE 121
Query: 316 EAWYFFKSLG-KRGMVPKS--EHYACMVDALSRAGQVTEAYEFICQMPLEPTAS------ 366
A F + K G+ S YAC G+ EA + L P
Sbjct: 122 VARRLFNEMPWKNGIAWNSMIHGYAC-------NGRPKEAVGLFKDLSLNPLERFCGDTF 174
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399
+L +++ C N G LD + + ++V + + D
Sbjct: 175 VLATVVGACTNLGALDCGKQIHARIVVDEVEFD 207
>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Glycine max]
Length = 629
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 164/452 (36%), Positives = 254/452 (56%), Gaps = 17/452 (3%)
Query: 2 LSFSALSYLGN----IDYSCKVLSHLSN--PRIFYWNTVIRGYS---KSKNPNKSISLFV 52
L FS S+L N + SC + SH RI + + Y+ + +P ++ ++
Sbjct: 43 LLFSPSSFLLNALLHLYASCPLPSHARKLFDRIPHSHKDSVDYTALIRCSHPLDALRFYL 102
Query: 53 KMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG 112
+M + + D + A +L L +H + K G+ + N ++ Y CG
Sbjct: 103 QMRQRALPLDGVALICALGACSKLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCG 162
Query: 113 DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVK 172
+ AR VF+ + VSW +L+G KC + + VF+ MPERN V+W+ LI GYV
Sbjct: 163 LVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVG 222
Query: 173 CGDYKEALVIFEEMR---DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSL 228
G KEA ++ +EM G N +TL SVL AC+ G + GR + Y + G L
Sbjct: 223 SGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDL 282
Query: 229 TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288
+ + TSL+DMYAKCG I AL+VF + + +V+ WNAM+ GLAMHG K +E+F
Sbjct: 283 GVMVGTSLVDMYAKCGRISAALMVFRHMPRR--NVVAWNAMLCGLAMHGMGKVVVEMFAC 340
Query: 289 MQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAG 347
M + + PD +TF+ LLS+C+H GLV + W +F L + G+ P+ EHYACMVD L RAG
Sbjct: 341 M-VEEVKPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIEHYACMVDLLGRAG 399
Query: 348 QVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSN 407
++ EA + + ++P+ P +LGSLL C HGKL L E + ++LV++ P + ++ LSN
Sbjct: 400 RLEEAEDLVKKLPIPPNEVVLGSLLGACYAHGKLRLGEKIMRELVQMDPLNTEYHILLSN 459
Query: 408 VYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
+YA+ + D+A + R+ ++ RG++K PG S +
Sbjct: 460 MYALCGKADKANSLRKVLKNRGIRKVPGMSSI 491
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 167/453 (36%), Positives = 237/453 (52%), Gaps = 54/453 (11%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S L +I Y+ K+ SH NP ++ + +I G S I L+ +M+ + + PD
Sbjct: 75 SNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVT 134
Query: 68 FLAKASG-RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ KA G LA +E VH+Q+ K G S+ I LI +YG
Sbjct: 135 SVLKACGCHLALKE-GREVHSQVLKLGLSSNRSIRIKLIELYG----------------- 176
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVS------------------WSALID 168
KCG AR+VF+ MPER+VV+ W+A+ID
Sbjct: 177 --------------KCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMID 222
Query: 169 GYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL 228
G V+ G+ AL +F M+ NEVT+V VL AC+ LGAL GR + YM + L
Sbjct: 223 GLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIEL 282
Query: 229 TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288
+ +LI+MY++CG I EA VF ++ + +V+ +N+MI G A+HG E++ELF
Sbjct: 283 NHFVGGALINMYSRCGDIDEAQRVFEQMK--EKNVITYNSMIMGFALHGKSVEAVELFRG 340
Query: 289 MQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAG 347
+ G TP +TF+G+L+AC+HGGL + F S+ K G+ P+ EHY CMVD L R G
Sbjct: 341 LIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLG 400
Query: 348 QVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSN 407
++ EAY FI M + P MLG+LL+ C HG L+LAE V K LV + G Y+ LSN
Sbjct: 401 RLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSN 460
Query: 408 VYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
Y+ +W EA R M G++K PG S +E
Sbjct: 461 AYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIE 493
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 118/262 (45%), Gaps = 28/262 (10%)
Query: 142 CGEMN---MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
C +N A ++F NV ++ALIDG V Y + + ++ +M + + +
Sbjct: 74 CSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAV 133
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF----- 253
SVL AC AL +GR + ++ GLS ++ LI++Y KCGA ++A VF
Sbjct: 134 TSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPE 193
Query: 254 ---------------HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
HG++ D + W AMI GL +G +LE+F MQ + P+E
Sbjct: 194 RDVVASTVMINYYFDHGIK----DTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNE 249
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
+T + +LSAC+ G + + + K + +++ SR G + EA Q
Sbjct: 250 VTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQ 309
Query: 359 MPLEPTASMLGSLLTGCMNHGK 380
M E S++ G HGK
Sbjct: 310 MK-EKNVITYNSMIMGFALHGK 330
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 163/439 (37%), Positives = 247/439 (56%), Gaps = 12/439 (2%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML--RAGVSPDHLTYPF 68
G +D + +L +P ++ + I +S +++L +ML R G+ P T
Sbjct: 70 GRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSA 129
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM-PTK 127
A G LA + A+H K + +++ +L+ MY G+ AR +FDGM P
Sbjct: 130 SLPACGCLA---VGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDP 186
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
VS +ML YAK G+++ AR +F+ +P +++V W+A++DGY + G EAL +F +M
Sbjct: 187 HVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQML 246
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG----LSLTLPLQTSLIDMYAKC 243
G + +EV++V L A A LG + GR + ++ + G + L + T+L+DMY KC
Sbjct: 247 RSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKC 306
Query: 244 GAIKEALIVFHGVEKH-QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
G+++EA+ VF + DV+ WNAMI G AMHG +E+LE F +++ G+ P +ITF+
Sbjct: 307 GSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFI 366
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
G+L+AC+H GLV E F ++ + G+VPK EHY CMVD L RAG+V EA++ + M
Sbjct: 367 GVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKA 426
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
+P A+M SLL C H L L + V LV + G YV LSN+YA +W E
Sbjct: 427 KPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRV 486
Query: 422 REAMETRGVKKYPGWSFVE 440
R M GV+K PG S VE
Sbjct: 487 RSMMRASGVQKEPGCSAVE 505
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 129/281 (45%), Gaps = 40/281 (14%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S + +G +D + + L + WN ++ GY++ P++++ LF +MLR+GV PD
Sbjct: 195 LSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDE 254
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYES----DLFISNSLIHMYGSCGDIVYARE 119
++ A +L E +H+ +A G + + + +L+ MY CG + A
Sbjct: 255 VSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVA 314
Query: 120 VF---DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
VF G + V+WN+M++GYA G
Sbjct: 315 VFRDLGGGGDRDVVAWNAMINGYAMHGR-------------------------------S 343
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTS 235
+EAL F ++R G ++T + VL AC+H G +D+GR + M ++ G+ +
Sbjct: 344 REALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGC 403
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
++D+ + G ++EA + + K + D +W +++G +H
Sbjct: 404 MVDLLGRAGRVEEAFDLVQSM-KAKPDAAMWASLLGACRLH 443
>gi|224136906|ref|XP_002322445.1| predicted protein [Populus trichocarpa]
gi|222869441|gb|EEF06572.1| predicted protein [Populus trichocarpa]
Length = 531
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/445 (34%), Positives = 240/445 (53%), Gaps = 39/445 (8%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK 91
N ++K N F+ + G P T+P + K+ + + VH IAK
Sbjct: 45 NRAAEFFAKGPNFADYACDFLSQMEDGFLPYMFTFPAVLKSCAKFMAVDEGRQVHGVIAK 104
Query: 92 TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW------------------- 132
+ D+++ NSL+H Y CG + A VFD M + +VSW
Sbjct: 105 MDFVCDIYVENSLVHFYSVCGSLDDASRVFDEMLVRDAVSWTGVIYPGIKGYLILGKGIH 164
Query: 133 ---------------NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
N+++D Y KC + +QVF+ +PE+++VSW+++I G V+C K
Sbjct: 165 GLIIERGFGLGLEVSNALMDMYVKCESLPEEKQVFDELPEKDIVSWTSIICGMVQCKFPK 224
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
E L +F +++ G + + + L SVL A A GALD GR++ Y+ K + + + T+++
Sbjct: 225 EVLELFCDVQSSGIEPDGIILTSVLSARASPGALDYGRLVREYIDHKAIKWDIQIGTAVV 284
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
DMYAKCG I+ A+ +F+ V H+ +VL WNAM+ GLAMHG +++L+LF EM G+ P+
Sbjct: 285 DMYAKCGCIEMAMQIFN-VMPHK-NVLTWNAMLNGLAMHGHGQKALQLFEEMVREGMRPN 342
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEF 355
E+TFL L+AC H G V E +F + + + P+ EHY CMVD L RAG + EA E
Sbjct: 343 EVTFLVTLTACCHCGFVGEGRRYFHWMKSQQYNLPPRLEHYGCMVDLLCRAGLLDEALEL 402
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
MP+ P ++G+LL+ C +G ++L + +LVE G YV LSN+ AI +RW
Sbjct: 403 TKAMPMLPDVRIMGALLSTCKANGNVELPREILDRLVEFDSRDSGVYVLLSNILAINQRW 462
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
+ R M+ G++K PG S +E
Sbjct: 463 ADVTRIRRLMKM-GIEKTPGSSVIE 486
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 116/274 (42%), Gaps = 34/274 (12%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V L I W ++I G + K P + + LF + +G+ PD + + A
Sbjct: 197 QVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCDVQSSGIEPDGIILTSVLSARASPG 256
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+ V I + D+ I +++ MY CG I A ++F+ MP K ++WN+ML+
Sbjct: 257 ALDYGRLVREYIDHKAIKWDIQIGTAVVDMYAKCGCIEMAMQIFNVMPHKNVLTWNAMLN 316
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
G A G ++AL +FEEM G + NEVT
Sbjct: 317 GLAMHGH-------------------------------GQKALQLFEEMVREGMRPNEVT 345
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT--SLIDMYAKCGAIKEALIVFHG 255
+ L AC H G + +GR +M + +L L+ ++D+ + G + EAL +
Sbjct: 346 FLVTLTACCHCGFVGEGRRYFHWMKSQQYNLPPRLEHYGCMVDLLCRAGLLDEALELTKA 405
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
+ DV I A++ +G V+ E+ +
Sbjct: 406 MPM-LPDVRIMGALLSTCKANGNVELPREILDRL 438
>gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190
gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein
homolog TM021B04.10 gb|2191192 from A. thaliana BAC
gb|AF007271 [Arabidopsis thaliana]
gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana]
gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 484
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 151/433 (34%), Positives = 245/433 (56%), Gaps = 5/433 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
L N DY+ +V SH+ NP + +N +I+ YS P +S+S F M G+ D TY L
Sbjct: 49 LSNSDYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPL 108
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
K+ L+ VH ++ +TG+ I ++ +Y S G + A++VFD M +
Sbjct: 109 LKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNV 168
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
V WN M+ G+ G++ +F+ M ER++VSW+++I KCG +EAL +F EM D
Sbjct: 169 VVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQ 228
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT-LPLQTSLIDMYAKCGAIKE 248
G +E T+V+VL A LG LD G+ + GL + + +L+D Y K G ++
Sbjct: 229 GFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEA 288
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSA 307
A +F +++ +V+ WN +I G A++G + ++LF M G + P+E TFLG+L+
Sbjct: 289 ATAIFRKMQRR--NVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLAC 346
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C++ G V F + +R + ++EHY MVD +SR+G++TEA++F+ MP+ A+
Sbjct: 347 CSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAA 406
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
M GSLL+ C +HG + LAE+ +LV+++P + G YV LSN+YA RW + R M+
Sbjct: 407 MWGSLLSACRSHGDVKLAEVAAMELVKIEPGNSGNYVLLSNLYAEEGRWQDVEKVRTLMK 466
Query: 427 TRGVKKYPGWSFV 439
++K G S +
Sbjct: 467 KNRLRKSTGQSTI 479
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 99/247 (40%), Gaps = 37/247 (14%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+HA + + + I + GS + YA VF + + +N+M+ Y+ G
Sbjct: 23 IHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQNPNVLVFNAMIKCYSLVG- 81
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
P E+L F M+ G A+E T +L +
Sbjct: 82 -----------PPL-------------------ESLSFFSSMKSRGIWADEYTYAPLLKS 111
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
C+ L L G+ + +I G ++ ++++Y G + +A VF E + +V+
Sbjct: 112 CSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFD--EMSERNVV 169
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
+WN MI G G V+ L LF +M I +++ ++S+ + G EA F +
Sbjct: 170 VWNLMIRGFCDSGDVERGLHLFKQMSERSI----VSWNSMISSLSKCGRDREALELFCEM 225
Query: 325 GKRGMVP 331
+G P
Sbjct: 226 IDQGFDP 232
>gi|225433481|ref|XP_002264386.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g03510 [Vitis vinifera]
gi|298205226|emb|CBI17285.3| unnamed protein product [Vitis vinifera]
Length = 430
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/419 (36%), Positives = 240/419 (57%), Gaps = 8/419 (1%)
Query: 27 RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP--DHLTYPFLAKASGRLAKRELAVA 84
R+ + ++ + + ++SLF M A +P D +P K+ + L A
Sbjct: 10 RLLSYTKLLASHVNQGRHHDALSLFHHM-HASSAPALDAFVFPLALKSCAAAHRPNLGAA 68
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+HA + K S+ F++ +L+ MYG C + AR +FD +P + V WN+M+ Y G
Sbjct: 69 IHAHVTKFSLVSNPFVACALVDMYGKCVSVSSARHLFDEIPHRNIVVWNAMISIYTHSGR 128
Query: 145 MNMARQVFELMP-ERNVVSWSALIDGY--VKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
+ A +FE+M E N +++A+I G ++ G +K AL + M +VG K N +TL+++
Sbjct: 129 VADALGLFEVMDVEPNASTFNAIISGLSGLEDGSFK-ALSFYRRMGEVGLKQNLITLLAL 187
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
L AC L AL + + Y I G+ L++ L++ Y +CG I + VF + +
Sbjct: 188 LPACVDLAALTLIKEIHGYAIRNGIDPHPHLRSCLVEAYGRCGCIVNSQCVFQSISMSER 247
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
DV+ W+++I A+HG + +LE F +M++ + PD ITFLG+L AC+H GL EA +F
Sbjct: 248 DVVAWSSLISAYALHGDARTALETFEQMEMAKVQPDGITFLGVLKACSHAGLADEALGYF 307
Query: 322 KSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
+ K G+ S+HY+C+VDALSRAG++ EAYE I MP++ TA G+LL C +G+
Sbjct: 308 GRMCKDYGVEASSDHYSCVVDALSRAGRLYEAYEIIQGMPVKSTAKTWGALLGACRTYGE 367
Query: 381 LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
++LAEI G+ L EL+PD+ YV L+ +YA R +EA+ R M GVK PG S+V
Sbjct: 368 VELAEIAGRALFELEPDNAANYVLLARIYASVGRHEEAQRMRREMNEMGVKAAPGSSWV 426
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 7/177 (3%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82
+S + W+++I Y+ + ++ F +M A V PD +T+ + KA + A
Sbjct: 244 MSERDVVAWSSLISAYALHGDARTALETFEQMEMAKVQPDGITFLGVLKACSHAGLADEA 303
Query: 83 VAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV-SWNSMLDGYA 140
+ ++ K G E+ + ++ G + A E+ GMP K + +W ++L
Sbjct: 304 LGYFGRMCKDYGVEASSDHYSCVVDALSRAGRLYEAYEIIQGMPVKSTAKTWGALLGACR 363
Query: 141 KCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
GE+ +A R +FEL P+ N ++ L Y G ++EA + EM ++G KA
Sbjct: 364 TYGEVELAEIAGRALFELEPD-NAANYVLLARIYASVGRHEEAQRMRREMNEMGVKA 419
>gi|242062638|ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
gi|241932439|gb|EES05584.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
Length = 485
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/382 (39%), Positives = 220/382 (57%), Gaps = 10/382 (2%)
Query: 67 PFLAKASGRLAKRELAVA----VHAQIAKTGYE---SDLFISNSLIHMYGSCGDIVYARE 119
P L A A+ AVA +HA + K+G SD+ +S SLI Y G + AR+
Sbjct: 57 PALIPALAACARLPAAVAEAEQIHALLVKSGVPRTVSDVQVSTSLIRAYARLGRVCDARK 116
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFDGMP + V+WN +LD + G+++ A +VF MP+RNVVSW+ +I G+ + G +EA
Sbjct: 117 VFDGMPDRTVVTWNVLLDALVRDGDLDAAWEVFVEMPQRNVVSWNTIIAGFTRNGWAQEA 176
Query: 180 LVIFEEMR-DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
+ +F EM G +E T+V + A +G L G+ Y++ + SL L +LI
Sbjct: 177 VDLFVEMTVAYGLAPDEATMVGFVSAVRDIGLLGIGKSAHGYVLRREFSLDGALGVALIS 236
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MY +CG++ A F V +V W ++I G A HG +++L LF EM+ VGI P+
Sbjct: 237 MYTRCGSMGAAHSCFLSVTT--KNVEHWTSLIAGFAAHGQPEKALRLFAEMRRVGIEPNG 294
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ 358
+TF+ +L+AC HGGLV E + +F + G+ P +HY C+VD L RAG + EA+
Sbjct: 295 VTFVAVLNACNHGGLVSEGFKYFDLMRSMGIRPMIQHYGCLVDLLGRAGFLKEAFNLASN 354
Query: 359 MPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418
+P +P + SLL C +HG +++AE+ KL + +P H YV LSN YA K+W++
Sbjct: 355 LPEDPGFVIWSSLLAACHSHGDVEMAELTASKLADAKPSHGSSYVLLSNTYARAKQWEDL 414
Query: 419 RTTREAMETRGVKKYPGWSFVE 440
R TR ME GV K PG S++E
Sbjct: 415 RRTRRRMEEHGVTKKPGLSWIE 436
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 123/278 (44%), Gaps = 33/278 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPD 62
AL G++D + +V + + WNT+I G++++ +++ LFV+M A G++PD
Sbjct: 133 LDALVRDGDLDAAWEVFVEMPQRNVVSWNTIIAGFTRNGWAQEAVDLFVEMTVAYGLAPD 192
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
T A + + + H + + + D + +LI MY CG + A F
Sbjct: 193 EATMVGFVSAVRDIGLLGIGKSAHGYVLRREFSLDGALGVALISMYTRCGSMGAAHSCFL 252
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ TK W S++ G+A G+ PE+ AL +
Sbjct: 253 SVTTKNVEHWTSLIAGFAAHGQ-----------PEK--------------------ALRL 281
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F EMR VG + N VT V+VL AC H G + +G M G+ + L+D+ +
Sbjct: 282 FAEMRRVGIEPNGVTFVAVLNACNHGGLVSEGFKYFDLMRSMGIRPMIQHYGCLVDLLGR 341
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G +KEA + + + +IW++++ HG V+
Sbjct: 342 AGFLKEAFNLASNLPE-DPGFVIWSSLLAACHSHGDVE 378
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/349 (41%), Positives = 221/349 (63%), Gaps = 5/349 (1%)
Query: 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
E D+ + N++I Y G+++ AR +FD MP + +SWN++L+GYA G+M +VF+
Sbjct: 34 ERDIVLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDD 93
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA-NEVTLVSVLCACAHLGALDQ 213
MPERNV SW+ LI GY + G E L F+ M D GS N+ T+ VL ACA LGA D
Sbjct: 94 MPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDF 153
Query: 214 GRMMLRYMIDKGLS-LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
G+ + +Y G + + + ++ +LIDMY KCGAI+ A+ VF G+++ D++ WN MI G
Sbjct: 154 GKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRR--DLISWNTMING 211
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVP 331
LA HG E+L LF EM+ GI+PD++TF+G+L AC H GLV + +F S+ ++P
Sbjct: 212 LAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMP 271
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL 391
+ EH C+VD LSRAG +T+A EFI +MP++ A + +LL + K+D+ E+ ++L
Sbjct: 272 EIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEEL 331
Query: 392 VELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++L+P + +V LSN+Y R+D+A + AM G KK G S++E
Sbjct: 332 IKLEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWIE 380
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 123/265 (46%), Gaps = 35/265 (13%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPF 68
+G+++ +V + +F WN +I+GY+++ ++ + F +M+ G V P+ T
Sbjct: 81 IGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTL 140
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYES-DLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A +L + VH GY D+ + N+LI MYG CG I A EVF G+ +
Sbjct: 141 VLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRR 200
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+SWN+M++G A G EAL +F EM+
Sbjct: 201 DLISWNTMINGLAAHGHGT-------------------------------EALNLFHEMK 229
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAI 246
+ G ++VT V VLCAC H+G ++ G M D + + ++D+ ++ G +
Sbjct: 230 NSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFL 289
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIG 271
+A + F ++D +IW ++G
Sbjct: 290 TQA-VEFINKMPVKADAVIWATLLG 313
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 23/196 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + +V + + WNT+I G + + ++++LF +M +G+SPD +T+ +
Sbjct: 185 GAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVL 244
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV----------YAREV 120
A + E +A Y + +F S++ CG +V A E
Sbjct: 245 CACKHMGLVEDGLA---------YFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEF 295
Query: 121 FDGMPTKM-SVSWNSMLDG---YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
+ MP K +V W ++L Y K +A + + RN ++ L + Y G +
Sbjct: 296 INKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRF 355
Query: 177 KEALVIFEEMRDVGSK 192
+A + MRD G K
Sbjct: 356 DDAARLKVAMRDTGFK 371
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 166/477 (34%), Positives = 247/477 (51%), Gaps = 68/477 (14%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGV-SPDHLTYPFLAKASG-RLAKRELAVAVH 86
F N++I+ + + + +L+ + R PD+ T+ LAK R+A E + H
Sbjct: 67 FLCNSMIKSHVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWE-GLETH 125
Query: 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW-------------- 132
+ K G+ D+++S +L+ MY G++ AR+VF+ MP + VSW
Sbjct: 126 GHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMG 185
Query: 133 -----------------NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
N ++DGY K G+M AR +F+ MPERNV+SW+++I GY GD
Sbjct: 186 NAWFLFKLMPGRDSAAFNLLIDGYVKVGDMESARSLFDEMPERNVISWTSMIYGYCNNGD 245
Query: 176 YKEALVIFEEM----------------------------RDVGS----KANEVTLVSVLC 203
A +F+ M R++ S + NEVT+VS+L
Sbjct: 246 VLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILP 305
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
A A LGAL+ G + R++ K L + + TSL+DMY KCG I +A VF + K ++
Sbjct: 306 AIATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETAT 365
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
WNA+I G AM+G E+LE F+EMQ GI P++IT G+LSAC+HGGLV E FK+
Sbjct: 366 --WNALINGFAMNGLASEALEAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEGKGQFKA 423
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+ + G+ PK EHY C+VD L RAG + EA I MP E +L S C +
Sbjct: 424 MIESGLSPKIEHYGCLVDLLGRAGCLDEAENLIKSMPFEANGIILSSFSFACGFSNDVTR 483
Query: 384 AEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
A+ V + V ++P ++G YV + N+YA+ +RW + + M RG KK G S +E
Sbjct: 484 AQRVLNQAVNMEPGNNGIYVMMRNLYAMEERWKDVKEINGLMRRRGAKKEVGSSAIE 540
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/359 (22%), Positives = 141/359 (39%), Gaps = 71/359 (19%)
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP--------- 125
R R+ + +HA I + ++++ I I G +AR +FD
Sbjct: 11 RCRTRKTLLQIHALILRNAIDANVNILTKFITTCGQLSSTRHARHLFDNRSHRGDTFLCN 70
Query: 126 --TKMSVSWNSMLDGY----------------------AKCGEMNMARQVFE-LMPERNV 160
K V + D + AKC + MA V+E L +V
Sbjct: 71 SMIKSHVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMA--VWEGLETHGHV 128
Query: 161 VSW---------SALIDGYVKCGDYKEALVIFEEMRD---------------VGSKANEV 196
V +AL+D Y K G+ A +F +M D G N
Sbjct: 129 VKIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMGNAW 188
Query: 197 TLVSVL----CACAHL---GALDQGRM-MLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
L ++ A +L G + G M R + D+ + TS+I Y G +
Sbjct: 189 FLFKLMPGRDSAAFNLLIDGYVKVGDMESARSLFDEMPERNVISWTSMIYGYCNNGDVLS 248
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI-TPDEITFLGLLSA 307
A +F + + +++ WNAMIGG + E+L+LF E+Q + P+E+T + +L A
Sbjct: 249 ARFLFDAMP--EKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPA 306
Query: 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
A G + + + + ++ + +VD + G++++A + ++P + TA+
Sbjct: 307 IATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETAT 365
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/435 (35%), Positives = 242/435 (55%), Gaps = 36/435 (8%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+++ + ++ + WN++I Y+ ++++LF +MLR G SP+ +T
Sbjct: 155 SRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITIT 214
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ + E A ++ E DL N ++H
Sbjct: 215 TVFSICAKTGDLETGRRAKAWVS----EEDL--QNVIVH--------------------- 247
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
++++ Y KC ++ AR+ F+ MP R+VV+WS +I GY G E+L +FE M+
Sbjct: 248 -----TALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMK 302
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
K NEVTLV VL ACA LG+ + G + Y+ + L LT L ++LIDMY KCG +
Sbjct: 303 ATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVA 362
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VFH +E Q V+ WN+MI GLA++GF ++++ L+ EM G+ P+EITFL LL+A
Sbjct: 363 RARDVFHRME--QKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTA 420
Query: 308 CAHGGLVMEAWYFFKSL--GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
C H GLV + FF+ + K+ P+ EH AC+VD L ++G++ EAY+FIC M +EP A
Sbjct: 421 CTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNA 480
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
+ +LL+ C H ++LA++ KLV L+P+ YV LSN+YA W + R R+ M
Sbjct: 481 VIWTTLLSACRAHADVELAKLAAGKLVVLEPNSSSIYVLLSNIYADAGLWGDVREIRDLM 540
Query: 426 ETRGVKKYPGWSFVE 440
++ ++K +S++E
Sbjct: 541 RSKNLQKLSAYSWIE 555
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 137/257 (53%), Gaps = 4/257 (1%)
Query: 56 RAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV 115
R G P P + K+ A H G D+F+ +L+ Y G++
Sbjct: 72 RGGAIPSG-CIPLVLKSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMD 130
Query: 116 YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
A F+ MP K + N ++ GY++ G++ AR++F+ MP + SW+++I Y G+
Sbjct: 131 SAVMAFEEMPIKDPIPMNCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGE 190
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
++EAL +F++M G+ N +T+ +V CA G L+ GR ++ ++ L + + T+
Sbjct: 191 FQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVI-VHTA 249
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
L++MY KC AI EA F + + DV+ W+ MI G + +G ESLELF M+
Sbjct: 250 LMEMYVKCRAIDEARREFDRMPRR--DVVAWSTMIAGYSHNGRPHESLELFERMKATNCK 307
Query: 296 PDEITFLGLLSACAHGG 312
P+E+T +G+LSACA G
Sbjct: 308 PNEVTLVGVLSACAQLG 324
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 6/186 (3%)
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
AR +F+ +P A + K ++E + + G + VL +CA
Sbjct: 31 ARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCAL 90
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
A QG + + +G+ + +QT+L+D YAK G + A++ F E D + N
Sbjct: 91 SAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFE--EMPIKDPIPMN 148
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327
+I G + G V+E+ LF M ++ +++ AHGG EA F + +
Sbjct: 149 CLITGYSRSGDVEEARRLFDSMP----RKTSASWNSMIACYAHGGEFQEALTLFDQMLRE 204
Query: 328 GMVPKS 333
G P +
Sbjct: 205 GASPNA 210
>gi|449465220|ref|XP_004150326.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Cucumis sativus]
Length = 874
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/430 (35%), Positives = 236/430 (54%), Gaps = 1/430 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + ++ + +F W +I G+ + K K++ L+ M ++ + P+ + L
Sbjct: 444 GLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLL 503
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G+ E H+ I K G+ FI ++I Y +C I A +
Sbjct: 504 SACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAYLQYQMSDKSHLT 563
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
S N M+ G+ K G ++ ARQ+F++MPE++V SWS +I GY + AL +F M D
Sbjct: 564 SSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVALDLFHGMIDSK 623
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ NE+T+VSV A A LG L +GR Y+ +K + L L ++IDMYAKCG+I AL
Sbjct: 624 VEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAIIDMYAKCGSIDTAL 683
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF ++ S V WNA+I GLAMHG SLE+F+ +Q I + ITFLG+LSAC H
Sbjct: 684 DVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRRSIKLNSITFLGVLSACCH 743
Query: 311 GGLV-MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV + YF+ + G+ P +HY C+VD L R G++ EA E + MP++ + G
Sbjct: 744 AGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVGRLREAEEIVRTMPMKADVVIWG 803
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL HG++++ E + L LQP H V LSN+YA W++A R A++++
Sbjct: 804 TLLASSRTHGEVEIGERAAENLARLQPSHGPGRVLLSNLYADAGLWEDAALVRRAIQSQR 863
Query: 430 VKKYPGWSFV 439
+ + PG+S V
Sbjct: 864 MIRSPGYSGV 873
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 183/384 (47%), Gaps = 30/384 (7%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
+ T+I G +++ ++I +F M AGV+P+ +T + A + +HA +
Sbjct: 332 YTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVI 391
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K + + IS +L+HMY + + +F+ MP + +VSWN ML GY K G ++ AR+
Sbjct: 392 KLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARE 451
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+FE +PER+V SW+ +IDG+V+ ++AL+++ MR NEV +V +L AC +
Sbjct: 452 LFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVS 511
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH----------- 259
+++GR ++ G +Q ++I YA C I A + + +K
Sbjct: 512 IEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVG 571
Query: 260 ------------------QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
+ DV W+ MI G A + +L+LF M + P+EIT
Sbjct: 572 FTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVALDLFHGMIDSKVEPNEITM 631
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+ + SA A G + E + + + + + A ++D ++ G + A + Q+
Sbjct: 632 VSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAIIDMYAKCGSIDTALDVFRQIKD 691
Query: 362 E-PTASMLGSLLTGCMNHGKLDLA 384
+ T S +++ G HG +L+
Sbjct: 692 KTSTVSPWNAIICGLAMHGHANLS 715
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 164/346 (47%), Gaps = 38/346 (10%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+HA + K G+ S+ FI NSLI+MY CG + AR +FD SVS N M+ GY K +
Sbjct: 254 IHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLDSVSCNIMMSGYVKLRQ 313
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
+ ARQ+F MPER VS++ +I G + + EA+ +F++MR G NEVT+ SV+ A
Sbjct: 314 LENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMASVMSA 373
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA----------------------- 241
C+H+G + RM+ +I + + T+L+ MY
Sbjct: 374 CSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVSW 433
Query: 242 --------KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
K G + +A +F + + DV W MI G ++++L L++ M+
Sbjct: 434 NVMLKGYVKSGLVDQARELFERIP--ERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSD 491
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAY 353
+ P+E+ + LLSAC + E F + K G V A ++ + ++ AY
Sbjct: 492 LHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAY 551
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399
QM + + ++ G +G +D A +++ ++ P+ D
Sbjct: 552 -LQYQMSDKSHLTSSNVMIVGFTKNGMIDQA----RQIFDMMPEKD 592
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 54/244 (22%)
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
E+++VS L CA A+ G+ + ++ G + + SLI+MY KCG + A ++F
Sbjct: 232 ELSVVSALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLLFD 291
Query: 255 G-----------------------------VEKHQSDVLIWNAMIGGLAMHGFVKESLEL 285
+ + + + MI GLA + E++E+
Sbjct: 292 SCSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEV 351
Query: 286 FTEMQIVGITPDEITFLGLLSACAHGG----------LVMEAWYFFKSLGKRGMVPKSEH 335
F +M+ G+ P+E+T ++SAC+H G LV++ +F L ++ H
Sbjct: 352 FKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLL----H 407
Query: 336 YACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ 395
C+ +L + +MP+ T S +L G + G +D A ++L E
Sbjct: 408 MYCVFSSLK------DTKRLFNEMPVRNTVSW-NVMLKGYVKSGLVDQA----RELFERI 456
Query: 396 PDHD 399
P+ D
Sbjct: 457 PERD 460
>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Brachypodium distachyon]
Length = 598
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 162/432 (37%), Positives = 236/432 (54%), Gaps = 39/432 (9%)
Query: 13 IDYSCKVLSHL-SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
+ Y+ VLS L +P F NTV+R ++ S P +++L + L PD TYP L +
Sbjct: 74 LRYAVAVLSGLLPSPDPFSLNTVLRIFASSARPRVALALHRRHL---APPDTHTYPPLLQ 130
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A RL +HA+ K G S +F+ NSL+H+YG+
Sbjct: 131 ACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGA--------------------- 169
Query: 132 WNSMLDGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
CG A +VF+ +P ERN+VSW+++++G+ G E L +F EM +V
Sbjct: 170 ----------CGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEV 219
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ T+VSVL ACA +G L GR + ++ GL +LID+YAKCG + +A
Sbjct: 220 EFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDA 279
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+F G V+ W ++I GLA++GF ++L+LF+ M+ + P EIT +G+L AC+
Sbjct: 280 RKMF-GEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACS 338
Query: 310 HGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV + + +F + + G+ P+ EH CMVD L RAG+V EA+ +I MPLEP A +
Sbjct: 339 HCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVW 398
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+LL C H KL++ E +LVEL P H G YV LSN+YA RW + R+ M T
Sbjct: 399 RTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTH 458
Query: 429 GVKKYPGWSFVE 440
GV+K PG S VE
Sbjct: 459 GVRKNPGHSLVE 470
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 161/445 (36%), Positives = 227/445 (51%), Gaps = 71/445 (15%)
Query: 62 DHLTYPFLAKA---SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAR 118
D TY FL KA +G R AVH+ + K G D F+ N+LI Y G AR
Sbjct: 5 DSFTYSFLIKALSAAGVAPVR----AVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 60
Query: 119 EVFDGMPT-------------------------------KMSVSWNSMLDGYAKCGEMNM 147
+VFD MP K +VSWN++LDGY K GE+
Sbjct: 61 KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEA 120
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE----------------------- 184
A ++F+ MPERNVVSWS ++ GY K GD + A VIF+
Sbjct: 121 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 180
Query: 185 --------EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
+M++ + + +VS+L ACA G+L G+ + RY+ + L + + +L
Sbjct: 181 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNAL 240
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
IDM+ KCG + A VF E Q D + WN++IGG AMHG ++LELF +M+ G P
Sbjct: 241 IDMFCKCGCVNRADYVFD-TETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNP 299
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEF 355
D +T + +LSAC H G V E F ++ + G++P+ EHY CM+D L R G + EA +
Sbjct: 300 DAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDL 359
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
I MP EP + GSLL+ C H ++ AEI +L +LQP + G Y LSN+YA +W
Sbjct: 360 IKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQW 419
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
+ R M+ G +K G S+VE
Sbjct: 420 SDMAKARMQMKGTGSQKTAGSSWVE 444
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 117/272 (43%), Gaps = 34/272 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+++ + + + + + W ++ ++ +++ LF +M A V D +
Sbjct: 147 GDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSIL 206
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT-KMS 129
A L +H + K + N+LI M+ CG + A VFD K S
Sbjct: 207 AACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDS 266
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSWNS++ G+A G GD +AL +F +M+
Sbjct: 267 VSWNSIIGGFAMHGH-----------------------------GD--KALELFAQMKQQ 295
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G + VT+++VL AC H+G +D+GR M D G+ + +ID+ + G IKE
Sbjct: 296 GFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKE 355
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
A+ + + ++V IW +++ +H V+
Sbjct: 356 AVDLIKSMPWEPNEV-IWGSLLSACRLHKNVE 386
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 142/348 (40%), Positives = 218/348 (62%), Gaps = 4/348 (1%)
Query: 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
E DL NS+I Y G I A+++FD MP + V+W +M+DGYAK G ++ A+ +F+
Sbjct: 253 EKDLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQ 312
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDVGSKANEVTLVSVLCACAHLGALDQ 213
MP R+VVS+++++ GYV+ + EAL IF +M ++ +E TLV VL A A LG L +
Sbjct: 313 MPHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSK 372
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
M Y+++K L L +LIDMY+KCG+I+ A++VF G+E D WNAMIGGL
Sbjct: 373 AMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH--WNAMIGGL 430
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PK 332
A+HG + + ++ +++ I PD+ITF+G+L+AC+H GLV E F+ + ++ + P+
Sbjct: 431 AIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPR 490
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV 392
+HY CMVD LSR+G + A I +MP+EP + + LT C +H + + E+VGK L+
Sbjct: 491 LQHYGCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNHHKEFETGELVGKHLI 550
Query: 393 ELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ YV LSN+YA F +W + R R M+ R ++K PG S++E
Sbjct: 551 LQAGYNPSSYVLLSNMYASFGKWKDVRRIRTMMKERKIEKIPGCSWIE 598
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 206/386 (53%), Gaps = 20/386 (5%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
F WN VI+ +S K+P +++ LF ML GVS D + + KA RL + + +H
Sbjct: 91 FLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQIHGI 150
Query: 89 IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
+ KTG SDLF+ N LI +Y CG + +AR++FD MP + SVS+NSM+DGY K G + A
Sbjct: 151 LRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIESA 210
Query: 149 RQVFELMPE--RNVVSWSALIDGYVKCGDYKE-ALVIFEEMRDVGSKANEVTLVSVLCAC 205
R++F+LMP +N++SW+++I GY + D + A +F EM + + ++ S++
Sbjct: 211 RELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEM----PEKDLISWNSMIDGY 266
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
G ++ + + M + + ++ID YAK G + +A +F + DV+
Sbjct: 267 VKHGRIEDAKDLFDAMPRRDVV----TWATMIDGYAKLGFVHQAKTLFD--QMPHRDVVS 320
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
+N+M+ G + + E+LE+F++M+ ++PDE T + +LSA A G + +A +
Sbjct: 321 YNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYI 380
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEA---YEFICQMPLEPTASMLGSLLTGCMNHGKL 381
++ + ++D S+ G + A +E I ++ +M+G L +
Sbjct: 381 VEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAF 440
Query: 382 DLAEIVGKKLVELQPDHDGRYVGLSN 407
D+ + ++ ++PD D +VG+ N
Sbjct: 441 DMLLQIERR--SIKPD-DITFVGVLN 463
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 118/299 (39%), Gaps = 65/299 (21%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM----------LRAG-- 58
G I+ + + + + W T+I GY+K +++ +LF +M + AG
Sbjct: 270 GRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYV 329
Query: 59 --------------------VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDL 98
+SPD T + A +L + A+ +H I + +
Sbjct: 330 QNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGG 389
Query: 99 FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
+ +LI MY CG I +A VF+G+ K WN+M+ G A G + F+++ +
Sbjct: 390 KLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHG---LGESAFDMLLQI 446
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
E R + K +++T V VL AC+H G + +G +
Sbjct: 447 --------------------------ERRSI--KPDDITFVGVLNACSHSGLVKEGLLCF 478
Query: 219 RYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
M K + L ++D+ ++ G+I+ A + + +DV IW + H
Sbjct: 479 ELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIQEMPIEPNDV-IWRTFLTACNHH 536
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
D +WNA+I + K++L LF M G++ D+ + +L AC+ G V
Sbjct: 89 DPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQIH 148
Query: 322 KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
L K G+ C++ + G + A + +MP + S S++ G + G +
Sbjct: 149 GILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVS-FNSMIDGYVKRGLI 207
Query: 382 DLAEIVGKKLVELQP 396
+ A ++L +L P
Sbjct: 208 ESA----RELFDLMP 218
>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 488
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 163/480 (33%), Positives = 245/480 (51%), Gaps = 77/480 (16%)
Query: 34 VIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTG 93
+IRGY+ + ++S+SL+ +L+ G+ P TYPF+ K+ L VH +I KTG
Sbjct: 1 MIRGYAFNGPAHQSVSLYGDLLQRGLKPHSFTYPFVLKSCADLGWFWDGKKVHCRILKTG 60
Query: 94 YESDLFISNSLIHMY------------------------------------------GSC 111
+ + +S++L H+Y S
Sbjct: 61 FSLNSSVSDALFHLYVNFSKFTGPKDAADGMASDARKVFDEMCVRSVEVWNRMILRYTST 120
Query: 112 GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV 171
GD+ A+++F+ M + +VSWN+M+ GY K GE+ AR++FE MPE+NVVSW+++I Y
Sbjct: 121 GDVSGAQKLFNTMEDRDTVSWNTMISGYIKVGEVMKARELFEKMPEKNVVSWTSMISAYA 180
Query: 172 KC-------------------------------GDYKEALVIFEEMRDVGSKANEVTLVS 200
K GD++EAL +F +M G + T VS
Sbjct: 181 KAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVS 240
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
V AC+HLG L G + Y ID L + T+LI+MYAKCG I A +F + K
Sbjct: 241 VFSACSHLGNLMLG-TKIHYAIDDFSQLGVIAATALIEMYAKCGDINRAFNLFIKIGK-- 297
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
DV WN M+ LA+HG +++L+LF+ MQ G+ P++ TFLG L AC+HGG+V E
Sbjct: 298 KDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFTFLGALFACSHGGMVEEGQTI 357
Query: 321 FKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
F + K + P+ EH+ C+VD LSR G++ EA + + +MP E ++ G+LL GC G
Sbjct: 358 FDMMEKEYKIRPRIEHFGCIVDLLSRNGRLEEALDVVDKMPFEADVAIWGALLGGCKLRG 417
Query: 380 KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
A + ++ +L+ G +V SN+YA ++W EA RE ME + K G S V
Sbjct: 418 DFKRAGEIVERARKLRSKEGGIHVSFSNMYASVEQWAEAVNAREKMENENILKKTGQSSV 477
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 130/285 (45%), Gaps = 40/285 (14%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
SA + G++ + + + + WN++I Y + + +++ LF +ML G++PD
Sbjct: 177 SAYAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGY 236
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T+ + A L L +H I + + + +LI MY CGDI A +F +
Sbjct: 237 TFVSVFSACSHLGNLMLGTKIHYAIDDFS-QLGVIAATALIEMYAKCGDINRAFNLFIKI 295
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
K WN ML A G+ A ++F LM ++
Sbjct: 296 GKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQ-------------------------- 329
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ--TSLIDMYAK 242
G K N+ T + L AC+H G +++G+ + M++K + ++ ++D+ ++
Sbjct: 330 -----GLKPNDFTFLGALFACSHGGMVEEGQTIFD-MMEKEYKIRPRIEHFGCIVDLLSR 383
Query: 243 CGAIKEALIVFHGVEK--HQSDVLIWNAMIGGLAMHGFVKESLEL 285
G ++EAL V V+K ++DV IW A++GG + G K + E+
Sbjct: 384 NGRLEEALDV---VDKMPFEADVAIWGALLGGCKLRGDFKRAGEI 425
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 73/188 (38%), Gaps = 41/188 (21%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I+ + + + +F+WN +++ + ++ LF M + G+ P+ T FL
Sbjct: 283 GDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFT--FLG 340
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
L H + + G + +FD M + +
Sbjct: 341 A---------LFACSHGGMVEEG------------------------QTIFDMMEKEYKI 367
Query: 131 S-----WNSMLDGYAKCGEMNMARQVFELMP-ERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ ++D ++ G + A V + MP E +V W AL+ G GD+K A I E
Sbjct: 368 RPRIEHFGCIVDLLSRNGRLEEALDVVDKMPFEADVAIWGALLGGCKLRGDFKRAGEIVE 427
Query: 185 EMRDVGSK 192
R + SK
Sbjct: 428 RARKLRSK 435
>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial [Vitis vinifera]
Length = 681
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 140/347 (40%), Positives = 209/347 (60%), Gaps = 3/347 (0%)
Query: 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
E D N++I Y D+ A +F MP +++WNSM+ G+A+ G + +AR +F
Sbjct: 332 ERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFAT 391
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQG 214
+P++N+VSW+++I GY GDYK A ++ +M G K + TL SVL C+ AL G
Sbjct: 392 IPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLG 451
Query: 215 RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLA 274
M + I K + +P+ SLI MY++CGAI EA +F V K Q +V+ WNAMIGG A
Sbjct: 452 -MQIHQQITKTVIPDIPINNSLITMYSRCGAIVEARTIFDEV-KLQKEVISWNAMIGGYA 509
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKS 333
HGF ++LELF M+ + + P ITF+ +L+ACAH G V E FKS+ + G+ P+
Sbjct: 510 FHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRI 569
Query: 334 EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
EH+A +VD + R GQ+ EA + I MP EP ++ G+LL C H ++LA + + L++
Sbjct: 570 EHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMK 629
Query: 394 LQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L+P+ YV L N+YA +WD A R ME ++K PG+S+V+
Sbjct: 630 LEPESSAPYVLLHNMYADVGQWDNATEMRMMMERNNIRKQPGYSWVD 676
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 132/279 (47%), Gaps = 35/279 (12%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S + GN++ + + + + + WN++I GY + + + L+ +ML G PD
Sbjct: 373 ISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDR 432
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + A L + +H QI KT D+ I+NSLI MY CG IV AR +FD
Sbjct: 433 HTLSSVLSVCSGFAALHLGMQIHQQITKTVI-PDIPINNSLITMYSRCGAIVEARTIFDE 491
Query: 124 MP-TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
+ K +SWN+M+ GYA G+ +AL +
Sbjct: 492 VKLQKEVISWNAMIGGYA--------------------------FHGFA-----ADALEL 520
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYA 241
FE M+ + + +T +SVL ACAH G + +GRM + M + G+ + SL+D+
Sbjct: 521 FELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVG 580
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+ G ++EA+ + + + + D +W A++G +H V+
Sbjct: 581 RHGQLEEAMDLINSM-PFEPDKAVWGALLGACRVHNNVE 618
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 107/438 (24%), Positives = 176/438 (40%), Gaps = 104/438 (23%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + + + I WN++I GY + + K+ LF +M PD
Sbjct: 81 GRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEM------PDR------- 127
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD--IVYAREVFDGMPTKM 128
D+ N +I Y SC + R +FD MP +
Sbjct: 128 --------------------------DVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERD 161
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
VSWN+M+ GY + G M+ A Q+F+ M ERNVVSW+A++ G+++ GD + A+ F M +
Sbjct: 162 CVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPE 221
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMML----RYMIDKG------------------- 225
S +L +++ G LD+ + +L R DKG
Sbjct: 222 RDS----ASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRV 277
Query: 226 -----LSLTLPLQ-----------------TSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
L +P S+I Y K I A ++F ++ + D
Sbjct: 278 DKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMK--ERDT 335
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
+ WN MI G ++E+ LF EM PD +T+ ++S A G + A F +
Sbjct: 336 ISWNTMISGYVRMSDMEEAWMLFQEMP----NPDTLTWNSMISGFAQKGNLELARALFAT 391
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE---PTASMLGSLLTGCMNHGK 380
+ ++ +V + M+ G A E QM L+ P L S+L+ C
Sbjct: 392 IPQKNLVS----WNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAA 447
Query: 381 LDLAEIVGKKLVE-LQPD 397
L L + +++ + + PD
Sbjct: 448 LHLGMQIHQQITKTVIPD 465
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 120/279 (43%), Gaps = 51/279 (18%)
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
Q K DL+ N I G I AR +FD MP + V+WNSM+ GY + EM
Sbjct: 57 QQPKNSVSLDLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAK 116
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
AR++F+ MP+R+VVSW+ +I GYV C
Sbjct: 117 ARKLFDEMPDRDVVSWNLMISGYVSC---------------------------------- 142
Query: 208 LGALDQGRMML--RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
QGR + R++ D+ ++I Y + G + EAL +F ++ + +V+
Sbjct: 143 -----QGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQ--ERNVVS 195
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
WNAM+ G +G V+ ++E F M D + L++ G + EA +
Sbjct: 196 WNAMVTGFLQNGDVERAIEFFMRMP----ERDSASLSALVAGLIQNGELDEAKRILLT-S 250
Query: 326 KRGMVPKSE---HYACMVDALSRAGQVTEAYEFICQMPL 361
+R K + Y ++ + G+V +A + Q+P
Sbjct: 251 RRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPF 289
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 119/296 (40%), Gaps = 94/296 (31%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVG 190
N + + G +N AR +F+ MP+RN+V+W+++I GYV+ + +A +F+EM RDV
Sbjct: 71 NKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPDRDVV 130
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
S ++S +C QGR ++E
Sbjct: 131 SWN---LMISGYVSC-------QGRW-----------------------------VEEGR 151
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F E + D + WN MI G G + E+L+LF MQ
Sbjct: 152 HLFD--EMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQ-------------------- 189
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
+R +V + MV + G V A EF +MP +AS L +
Sbjct: 190 ---------------ERNVVS----WNAMVTGFLQNGDVERAIEFFMRMPERDSAS-LSA 229
Query: 371 LLTGCMNHGKLDLAEIVGKKLV---ELQPDHDGRYVGLSNV----YAIFKRWDEAR 419
L+ G + +G+LD A K+++ Q D G V N+ Y R D+AR
Sbjct: 230 LVAGLIQNGELDEA----KRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKAR 281
>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
from Arabidopsis thaliana BAC F28A21 gi|T04867 and
contains multiple PPR PF|01535 repeats. EST gb|AI999742
comes from this gene. This gene may be cut off, partial
[Arabidopsis thaliana]
Length = 757
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/439 (34%), Positives = 246/439 (56%), Gaps = 11/439 (2%)
Query: 11 GNIDYSCKVLSHLSNP----RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
G ++ ++LS + + I WN ++ G+++S +++ +F K+ G PD +T
Sbjct: 196 GCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTV 255
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ + G + +H + K G D + +++I MYG G + +F+
Sbjct: 256 SSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEM 315
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPER----NVVSWSALIDGYVKCGDYKEALVI 182
+ N+ + G ++ G ++ A ++FEL E+ NVVSW+++I G + G EAL +
Sbjct: 316 MEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALEL 375
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F EM+ G K N VT+ S+L AC ++ AL GR + + L + + ++LIDMYAK
Sbjct: 376 FREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAK 435
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG I + IVF+ + +++ WN+++ G +MHG KE + +F + + PD I+F
Sbjct: 436 CGRINLSQIVFNMMPT--KNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFT 493
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
LLSAC GL E W +FK + + G+ P+ EHY+CMV+ L RAG++ EAY+ I +MP
Sbjct: 494 SLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPF 553
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
EP + + G+LL C +DLAEI +KL L+P++ G YV LSN+YA W E +
Sbjct: 554 EPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSI 613
Query: 422 REAMETRGVKKYPGWSFVE 440
R ME+ G+KK PG S+++
Sbjct: 614 RNKMESLGLKKNPGCSWIQ 632
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 198/376 (52%), Gaps = 9/376 (2%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
VL + +P I+ ++++I +K+K +SI +F +M G+ PD P L K L+
Sbjct: 72 VLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSA 131
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
++ +H +G + D F+ S+ HMY CG + AR+VFD M K V+ +++L
Sbjct: 132 FKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCA 191
Query: 139 YAKCGEMNMARQVFELMP----ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
YA+ G + ++ M E N+VSW+ ++ G+ + G +KEA+V+F+++ +G +
Sbjct: 192 YARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPD 251
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
+VT+ SVL + L+ GR++ Y+I +GL + +++IDMY K G + + +F+
Sbjct: 252 QVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFN 311
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
E ++ V NA I GL+ +G V ++LE+F + + + +++ +++ CA G
Sbjct: 312 QFEMMEAGVC--NAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKD 369
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDA---LSRAGQVTEAYEFICQMPLEPTASMLGSL 371
+EA F+ + G+ P M+ A ++ G + F ++ L + +L
Sbjct: 370 IEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSAL 429
Query: 372 LTGCMNHGKLDLAEIV 387
+ G+++L++IV
Sbjct: 430 IDMYAKCGRINLSQIV 445
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 33/246 (13%)
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
HA+I K+G ++D +IS LI Y + +N D
Sbjct: 38 HARILKSGAQNDGYISAKLIASYSN---------------------YNCFND-------- 68
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
A V + +P+ + S+S+LI K + +++ +F M G + L ++ C
Sbjct: 69 --ADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVC 126
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
A L A G+ + GL + +Q S+ MY +CG + +A VF + DV+
Sbjct: 127 AELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMS--DKDVVT 184
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
+A++ A G ++E + + +EM+ GI + +++ G+LS G EA F+ +
Sbjct: 185 CSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIH 244
Query: 326 KRGMVP 331
G P
Sbjct: 245 HLGFCP 250
>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 760
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/439 (34%), Positives = 246/439 (56%), Gaps = 11/439 (2%)
Query: 11 GNIDYSCKVLSHLSNP----RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
G ++ ++LS + + I WN ++ G+++S +++ +F K+ G PD +T
Sbjct: 196 GCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTV 255
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ + G + +H + K G D + +++I MYG G + +F+
Sbjct: 256 SSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEM 315
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPER----NVVSWSALIDGYVKCGDYKEALVI 182
+ N+ + G ++ G ++ A ++FEL E+ NVVSW+++I G + G EAL +
Sbjct: 316 MEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALEL 375
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F EM+ G K N VT+ S+L AC ++ AL GR + + L + + ++LIDMYAK
Sbjct: 376 FREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAK 435
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG I + IVF+ + +++ WN+++ G +MHG KE + +F + + PD I+F
Sbjct: 436 CGRINLSQIVFNMMPT--KNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFT 493
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
LLSAC GL E W +FK + + G+ P+ EHY+CMV+ L RAG++ EAY+ I +MP
Sbjct: 494 SLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPF 553
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
EP + + G+LL C +DLAEI +KL L+P++ G YV LSN+YA W E +
Sbjct: 554 EPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSI 613
Query: 422 REAMETRGVKKYPGWSFVE 440
R ME+ G+KK PG S+++
Sbjct: 614 RNKMESLGLKKNPGCSWIQ 632
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 198/376 (52%), Gaps = 9/376 (2%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
VL + +P I+ ++++I +K+K +SI +F +M G+ PD P L K L+
Sbjct: 72 VLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSA 131
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
++ +H +G + D F+ S+ HMY CG + AR+VFD M K V+ +++L
Sbjct: 132 FKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCA 191
Query: 139 YAKCGEMNMARQVFELMP----ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
YA+ G + ++ M E N+VSW+ ++ G+ + G +KEA+V+F+++ +G +
Sbjct: 192 YARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPD 251
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
+VT+ SVL + L+ GR++ Y+I +GL + +++IDMY K G + + +F+
Sbjct: 252 QVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFN 311
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
E ++ V NA I GL+ +G V ++LE+F + + + +++ +++ CA G
Sbjct: 312 QFEMMEAGVC--NAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKD 369
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDA---LSRAGQVTEAYEFICQMPLEPTASMLGSL 371
+EA F+ + G+ P M+ A ++ G + F ++ L + +L
Sbjct: 370 IEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSAL 429
Query: 372 LTGCMNHGKLDLAEIV 387
+ G+++L++IV
Sbjct: 430 IDMYAKCGRINLSQIV 445
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 33/246 (13%)
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
HA+I K+G ++D +IS LI Y + +N D
Sbjct: 38 HARILKSGAQNDGYISAKLIASYSN---------------------YNCFND-------- 68
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
A V + +P+ + S+S+LI K + +++ +F M G + L ++ C
Sbjct: 69 --ADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVC 126
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
A L A G+ + GL + +Q S+ MY +CG + +A VF + DV+
Sbjct: 127 AELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMS--DKDVVT 184
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
+A++ A G ++E + + +EM+ GI + +++ G+LS G EA F+ +
Sbjct: 185 CSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIH 244
Query: 326 KRGMVP 331
G P
Sbjct: 245 HLGFCP 250
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/435 (35%), Positives = 242/435 (55%), Gaps = 36/435 (8%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+++ + ++ + WN++I Y+ ++++LF +MLR G SP+ +T
Sbjct: 155 SRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITIT 214
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ + E A ++ E DL N ++H
Sbjct: 215 TVFSICAKTGDLETGRRAKAWVS----EEDL--QNVIVH--------------------- 247
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
++++ Y KC ++ AR+ F+ MP R+VV+WS +I GY G E+L +FE M+
Sbjct: 248 -----TALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMK 302
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
K NEVTLV VL ACA LG+ + G + Y+ + L LT L ++LIDMY KCG +
Sbjct: 303 ATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVA 362
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VFH +E Q V+ WN+MI GLA++GF ++++ L+ EM G+ P+EITFL LL+A
Sbjct: 363 RARDVFHRME--QKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTA 420
Query: 308 CAHGGLVMEAWYFFKSL--GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
C H GLV + FF+ + K+ P+ EH AC+VD L ++G++ EAY+FIC M +EP A
Sbjct: 421 CTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNA 480
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
+ +LL+ C H ++LA++ KLV L+P+ YV LSN+YA W + R R+ M
Sbjct: 481 VIWTTLLSACRAHADVELAKLAAGKLVVLEPNSSSIYVLLSNIYADAGLWGDVREIRDLM 540
Query: 426 ETRGVKKYPGWSFVE 440
++ ++K +S++E
Sbjct: 541 RSKNLQKLSAYSWIE 555
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 137/257 (53%), Gaps = 4/257 (1%)
Query: 56 RAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV 115
R G P P + K+ A H G D+F+ +L+ Y G++
Sbjct: 72 RGGAIPSG-CIPLVLKSCALSAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMD 130
Query: 116 YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
A F+ MP K + N ++ GY++ G++ AR++F+ MP + SW+++I Y G+
Sbjct: 131 SAVMAFEEMPIKDPIPMNCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGE 190
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
++EAL +F++M G+ N +T+ +V CA G L+ GR ++ ++ L + + T+
Sbjct: 191 FQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVI-VHTA 249
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295
L++MY KC AI EA F + + DV+ W+ MI G + +G ESLELF M+
Sbjct: 250 LMEMYVKCRAIDEARREFDRMPRR--DVVAWSTMIAGYSHNGRPHESLELFERMKATNCK 307
Query: 296 PDEITFLGLLSACAHGG 312
P+E+T +G+LSACA G
Sbjct: 308 PNEVTLVGVLSACAQLG 324
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 6/186 (3%)
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
AR +F+ +P A + K ++E + + G + VL +CA
Sbjct: 31 ARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCAL 90
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
A QG + + +G+ + +QT+L+D YAK G + A++ F E D + N
Sbjct: 91 SAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFE--EMPIKDPIPMN 148
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327
+I G + G V+E+ LF M ++ +++ AHGG EA F + +
Sbjct: 149 CLIIGYSRSGDVEEARRLFDSMP----RKTSASWNSMIACYAHGGEFQEALTLFDQMLRE 204
Query: 328 GMVPKS 333
G P +
Sbjct: 205 GASPNA 210
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/435 (34%), Positives = 244/435 (56%), Gaps = 38/435 (8%)
Query: 11 GNIDYSCKVLSHLSNP-RIFYWNTVIRGYSKSKN----PNKSISLFVKMLRAGVSPDHLT 65
++ Y+ +V + +P + ++NT++RGY++ ++ +FV+M+ GV+PD T
Sbjct: 81 AHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYT 140
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ L KA E H K G +++ +LI+MY
Sbjct: 141 FVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMY----------------- 183
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
A+CG++ AR +F+ M VVS++A+I V+ EALV+F E
Sbjct: 184 --------------AECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFRE 229
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M+ G K VTL+SVL ACA LGAL+ GR + Y+ L + + T+LIDMYAKCG+
Sbjct: 230 MQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGS 289
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
+++A+ VF +E D W+ M+ A HG+ +E++ +F EM+ G+ PD++TFLG+L
Sbjct: 290 LEDAIGVFQDMESR--DKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVL 347
Query: 306 SACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC+H G+V E +F S+ + G+V +HY C+ D L+R+GQ+ AY+FI ++P++PTA
Sbjct: 348 YACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTA 407
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
+ +LL+ C HG +D+ + V ++++EL H G YV SN+ A RW+E R+ M
Sbjct: 408 ILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLM 467
Query: 426 ETRGVKKYPGWSFVE 440
+GV K PG S +E
Sbjct: 468 SEKGVVKVPGCSSIE 482
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 162/416 (38%), Positives = 241/416 (57%), Gaps = 16/416 (3%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYPFLAKASGRLAKRELAVAVH 86
+ WNT++ GY K ++ +F +M R GVS + + EL VA
Sbjct: 146 LVTWNTMLGGYVKCGEIGEARRVFEQMPQRNGVSWSAMVGAYAGAG-------ELDVARE 198
Query: 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
++ NS+I + G + AR++FD MP + VSWN+M+ GYA GEMN
Sbjct: 199 MFDEMPAIGRNVVSWNSMITGFARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMN 258
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK-ANEVTLVSVLCAC 205
AR++F+ MPE++VVSW+ +I GY + Y E L +F M+ + NEVT+VSVL AC
Sbjct: 259 DARELFDRMPEKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSAC 318
Query: 206 AHLGALDQGRMMLRYMIDKG---LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
AHL AL++GR + IDK L L +LIDMY+KCG A+ +FH ++ Q +
Sbjct: 319 AHLTALEEGRWAHAF-IDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLD--QKN 375
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
V WNA+I GLA++G V+ S+++F +M+ G P+ ITF+G+L+ACAHGGLV E F+
Sbjct: 376 VSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQ 435
Query: 323 SLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKL 381
S+ G+ P+++HY CMVD L RAG + EA E I MP+ P +LG+LL C H ++
Sbjct: 436 SMASTCGVQPEAKHYGCMVDMLGRAGLLEEAEELIRSMPMVPDVMILGALLGACRMHKRV 495
Query: 382 DLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
D+A V +++ L G +V +S++YA +W +A R ++ G+ K G S
Sbjct: 496 DVAARVQNEILGLSTQQSGCHVLISDIYAAAGKWADALYARGVLQKFGISKLRGSS 551
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 134/410 (32%), Positives = 206/410 (50%), Gaps = 16/410 (3%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK-RELAVAVHA 87
F N +IR + S +P + + F +LR+G +PD T+P L K++ RLA VHA
Sbjct: 44 FLHNLLIRASATSPSPRLAFAAFSSILRSGDTPDRFTFPSLLKSASRLASFPRTGAQVHA 103
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS-VSWNSMLDGYAKCGEMN 146
Q + G D+F+ N+L+ MY + D REVFD V+WN+ML GY KCGE+
Sbjct: 104 QAVRRGLLVDVFVVNTLLAMYAAFRDTRSMREVFDSCAGVADLVTWNTMLGGYVKCGEIG 163
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
AR+VFE MP+RN VSWSA++ Y G+ A +F+EM +G N V+ S++ A
Sbjct: 164 EARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIGR--NVVSWNSMITGFA 221
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
G L + R M D+ L +++ YA G + +A +F + + DV+ W
Sbjct: 222 RHGLLP----LARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMP--EKDVVSW 275
Query: 267 NAMIGGLAMHGFVKESLELFTEMQI-VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
MI G A E+LELF MQ + P+E+T + +LSACAH + E + +
Sbjct: 276 TCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFID 335
Query: 326 KRGMVPKSEHY--ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
K MV SE A ++D S+ G+ A + + + S +L+TG +G +
Sbjct: 336 KHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLD-QKNVSAWNALITGLAVNGDVRS 394
Query: 384 AEIVGKKLVELQPDHDG-RYVGLSNVYAIFKRWDEARTTREAM-ETRGVK 431
+ V +++ +G +VG+ A DE R ++M T GV+
Sbjct: 395 SIDVFEQMRRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQ 444
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 139/292 (47%), Gaps = 21/292 (7%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
K+ + + WNT++RGY+ + N + LF +M V A+A
Sbjct: 231 KMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQARCYTE 290
Query: 78 KRELAVAVHAQIAKTGYESDLFISN-SLIHMYGSCGDIV------YAREVFDGMPTKMSV 130
EL A+ + ES++ + +++ + +C + +A D +
Sbjct: 291 TLELFRAMQS-------ESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDS 343
Query: 131 SWN---SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+N +++D Y+KCG ++A ++F + ++NV +W+ALI G GD + ++ +FE+MR
Sbjct: 344 EFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMR 403
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAI 246
G K N +T V VL ACAH G +D+GR + M G+ ++DM + G +
Sbjct: 404 RSGEKPNGITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPEAKHYGCMVDMLGRAGLL 463
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
+EA + + DV+I A++G MH V + + E I+G++ +
Sbjct: 464 EEAEELIRSM-PMVPDVMILGALLGACRMHKRVDVAARVQNE--ILGLSTQQ 512
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY- 66
S G D + K+ L + WN +I G + + + SI +F +M R+G P+ +T+
Sbjct: 356 SKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFV 415
Query: 67 -PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
A A G L E + + G + + ++ M G G + A E+ MP
Sbjct: 416 GVLTACAHGGLVD-EGRRCFQSMASTCGVQPEAKHYGCMVDMLGRAGLLEEAEELIRSMP 474
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 169/505 (33%), Positives = 257/505 (50%), Gaps = 76/505 (15%)
Query: 9 YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPF 68
+ Y+ V + +P IF +NT+IRG + ++S++ M + G +PD+ T+PF
Sbjct: 47 HFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPF 106
Query: 69 LAKASGRLAKR-ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ KA RL + +++H+ + KTG++ D+F+ L+ +Y G + AR+VFD +P K
Sbjct: 107 VLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEK 166
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFE------LMPER----------------------- 158
VSW +++ GY + G A +F L P+
Sbjct: 167 NVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWID 226
Query: 159 ----------NVVSWSALIDGYVKCGDY-------------------------------K 177
NV ++L+D Y KCG K
Sbjct: 227 GYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPK 286
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP-LQTSL 236
EAL +F EM+ + + +V V AC+ LGAL+ G R ++D L+ P L T+L
Sbjct: 287 EALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWA-RGLMDGDEFLSNPVLGTAL 345
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
ID YAKCG++ +A VF G+ + D +++NA+I GLAM G V + +F +M VG+ P
Sbjct: 346 IDFYAKCGSVAQAKEVFKGMRR--KDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQP 403
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEF 355
D TF+GLL C H GLV + +F + + P EHY CMVD +RAG + EA +
Sbjct: 404 DGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDL 463
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
I MP+E + + G+LL GC H LAE V K+L+EL+P + G YV LSN+Y+ RW
Sbjct: 464 IRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRW 523
Query: 416 DEARTTREAMETRGVKKYPGWSFVE 440
DEA R ++ +G++K PG S+VE
Sbjct: 524 DEAEKIRSSLNQKGMQKLPGCSWVE 548
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/473 (32%), Positives = 250/473 (52%), Gaps = 52/473 (10%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
++ L + + WN++I GY + + + ++ +M+ G+ D T +
Sbjct: 206 ELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSG 265
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
L AVH+ K+ +E + SN+L+ MY CGD+ A VF+ M + VSW SM+
Sbjct: 266 TLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIA 325
Query: 138 GYAKCGEMNMARQVFELMP---------------------------------------ER 158
GY + G + A ++ + M E
Sbjct: 326 GYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMES 385
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGS--------KANEVTLVSVLCACAHL 208
N+ +AL+D Y KCG + A +F M +D+ S K + T+ VL ACA L
Sbjct: 386 NLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASL 445
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
AL++G+ + Y++ G S + +L+D+Y KCG + A ++F + D++ W
Sbjct: 446 SALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP--SKDLVSWTV 503
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR- 327
MI G MHG+ E++ F EM+ GI PDE++F+ +L AC+H GL+ + W FF +
Sbjct: 504 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDF 563
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ PK EHYACMVD LSR G +++AYEF+ +P+ P A++ G+LL GC N+ ++LAE V
Sbjct: 564 NIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKV 623
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+++ EL+P++ G YV L+N+YA ++W+E + RE + +G++K PG S++E
Sbjct: 624 AERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIE 676
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 139/315 (44%), Gaps = 51/315 (16%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G++D + +V + + W ++I GY++ + +I L +M + GV D +
Sbjct: 297 SKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAIT 356
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A R + VH I ES+LF+ N+L+ MY CG + A VF M K
Sbjct: 357 SILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK 416
Query: 128 MSVSWNSML-------------------------------------------------DG 138
+SWN+M+ D
Sbjct: 417 DIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 476
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
Y KCG + +AR +F+++P +++VSW+ +I GY G EA+ F EMRD G + +EV+
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSF 536
Query: 199 VSVLCACAHLGALDQG-RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+S+L AC+H G L+QG R D + L ++D+ ++ G + +A F
Sbjct: 537 ISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAY-EFMETL 595
Query: 258 KHQSDVLIWNAMIGG 272
D IW A++ G
Sbjct: 596 PIAPDATIWGALLCG 610
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 119/248 (47%), Gaps = 22/248 (8%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VH+ I D + L+ Y +CGD+ R VFD M K WN M+ YAK G+
Sbjct: 121 VHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180
Query: 145 MNMARQVFELMPE--------------------RNVVSWSALIDGYVKCGDYKEALVIFE 184
+ +F++M E R+V+SW+++I GYV G + L I++
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYK 240
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+M +G + T++SVL CA+ G L G+ + I + +L+DMY+KCG
Sbjct: 241 QMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCG 300
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+ AL VF + + +V+ W +MI G G +++L +M+ G+ D + +
Sbjct: 301 DLDGALRVFEKM--GERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSI 358
Query: 305 LSACAHGG 312
L ACA G
Sbjct: 359 LHACARSG 366
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 30/236 (12%)
Query: 157 ERNVVSWSALIDGYVKCGDYKEA--LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQG 214
+ V ++A I + + GD + A L+ + ++ +K T SVL CA L + G
Sbjct: 63 DHQVTDYNAKILHFCQLGDLENAMELICMCQKSELETK----TYGSVLQLCAGLKSFTDG 118
Query: 215 RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLA 274
+ + + + + L L+ YA CG +KE VF +EK +V +WN M+ A
Sbjct: 119 KKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEK--KNVYLWNFMVSEYA 176
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSE 334
G KES+ LF M GI G A+ F L R ++
Sbjct: 177 KIGDFKESICLFKIMVEKGI---------------EGKRPESAFELFDKLCDRDVIS--- 218
Query: 335 HYACMVDALSRAGQVTEA---YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ M+ G Y+ + + ++ + + S+L GC N G L L + V
Sbjct: 219 -WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAV 273
>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
Length = 496
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/415 (36%), Positives = 238/415 (57%), Gaps = 7/415 (1%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK--RELAVAVHAQ 88
W + I S++ ++ F M AGV P+H+T+ L G + +H
Sbjct: 35 WTSRITLLSRNGRLAEAAKEFSDMRFAGVEPNHITFIALLSGCGDFSSGSESFGDLLHGY 94
Query: 89 IAKTGYESD-LFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
K G + + + + ++I MY G + AR VFD M K S++WN+M+DGY + G+++
Sbjct: 95 ACKLGLDRNHVMVGTAIIGMYSKHGRVSKARLVFDHMEGKNSMTWNTMIDGYMRKGKIDD 154
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
A ++F+ MPER ++SW+A+I+G+VK G ++EALV F EM+ G + + V +++VL AC +
Sbjct: 155 AYKLFDEMPERGLISWTAMINGFVKKGFHEEALVWFREMQSSGVEPDYVAIIAVLAACTN 214
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
LGAL G + RY++ + + + S ID++ +CG ++ A VF +EK V+ WN
Sbjct: 215 LGALSFGLWVHRYLVSRDFRNNVRVNNSSIDLHCRCGCVELAQPVFDHMEKRT--VVSWN 272
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327
++I + +G ESL F MQ G P+ +TF G L+AC+H GLV E +F+++ K
Sbjct: 273 SVIVVFSANGHADESLVYFRRMQEEGFKPNAVTFTGALTACSHVGLVEEGLRYFQTMKKE 332
Query: 328 GMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD-LAE 385
+ P+ EHY C+VD SRAG++ +A + MP++P ++GSLL C HG LAE
Sbjct: 333 YRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMKPNEVVIGSLLAACRTHGNNTVLAE 392
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ K L + YV LSN+YA +W+ A R M+ G+KK PG+S +E
Sbjct: 393 RLMKHLSDTNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIE 447
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 64/299 (21%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISL-------------------- 50
G + + V H+ WNT+I GY + + + L
Sbjct: 119 GRVSKARLVFDHMEGKNSMTWNTMIDGYMRKGKIDDAYKLFDEMPERGLISWTAMINGFV 178
Query: 51 -----------FVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
F +M +GV PD++ + A L + VH + + +++
Sbjct: 179 KKGFHEEALVWFREMQSSGVEPDYVAIIAVLAACTNLGALSFGLWVHRYLVSRDFRNNVR 238
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
++NS I ++ CG + A+ VFD M + VSWNS+
Sbjct: 239 VNNSSIDLHCRCGCVELAQPVFDHMEKRTVVSWNSV------------------------ 274
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
+V +SA G E+LV F M++ G K N VT L AC+H+G +++G +
Sbjct: 275 IVVFSA-------NGHADESLVYFRRMQEEGFKPNAVTFTGALTACSHVGLVEEGLRYFQ 327
Query: 220 YMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
M + +S + L+D+Y++ G +++AL V + ++V+I +++ HG
Sbjct: 328 TMKKEYRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMKPNEVVI-GSLLAACRTHG 385
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 33/192 (17%)
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL--GALDQGRMM 217
+SW++ I + G EA F +MR G + N +T +++L C G+ G ++
Sbjct: 32 TISWTSRITLLSRNGRLAEAAKEFSDMRFAGVEPNHITFIALLSGCGDFSSGSESFGDLL 91
Query: 218 LRYMIDKGLSLT-LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS--------------- 261
Y GL + + T++I MY+K G + +A +VF +E S
Sbjct: 92 HGYACKLGLDRNHVMVGTAIIGMYSKHGRVSKARLVFDHMEGKNSMTWNTMIDGYMRKGK 151
Query: 262 --------------DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
++ W AMI G GF +E+L F EMQ G+ PD + + +L+A
Sbjct: 152 IDDAYKLFDEMPERGLISWTAMINGFVKKGFHEEALVWFREMQSSGVEPDYVAIIAVLAA 211
Query: 308 CAH-GGLVMEAW 318
C + G L W
Sbjct: 212 CTNLGALSFGLW 223
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 34/134 (25%)
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA----------- 309
S + W + I L+ +G + E+ + F++M+ G+ P+ ITF+ LLS C
Sbjct: 30 STTISWTSRITLLSRNGRLAEAAKEFSDMRFAGVEPNHITFIALLSGCGDFSSGSESFGD 89
Query: 310 --HG-----GL----VMEAWYFFKSLGKRGMVPKS----EH--------YACMVDALSRA 346
HG GL VM K G V K+ +H + M+D R
Sbjct: 90 LLHGYACKLGLDRNHVMVGTAIIGMYSKHGRVSKARLVFDHMEGKNSMTWNTMIDGYMRK 149
Query: 347 GQVTEAYEFICQMP 360
G++ +AY+ +MP
Sbjct: 150 GKIDDAYKLFDEMP 163
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/411 (36%), Positives = 229/411 (55%), Gaps = 34/411 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN ++ GY KS K++ F M G+ D +T KASG L + + A
Sbjct: 1067 WNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAI 1126
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G+ +DL++S+ + LD Y KCG+M A +
Sbjct: 1127 KLGFNNDLWVSSGV-------------------------------LDMYIKCGDMPNALE 1155
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F + + V+W+ +I GY++ GD AL ++ MR G + +E T +++ A + L A
Sbjct: 1156 LFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTA 1215
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L+QG+ + ++ SL + TSL+DMY KCG++++A VF ++ + V+ WNAM+
Sbjct: 1216 LEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK--VVFWNAML 1273
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GM 329
GLA HG V E+L LF MQ GI PD++TF+G+LSAC+H GL EA+ +F ++ K G+
Sbjct: 1274 LGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGI 1333
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P+ EHY+C+VDAL RAG++ EA I MP + +ASM +LL C G + A+ V
Sbjct: 1334 TPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVAD 1393
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
KL+ L P YV LSN+YA ++WD+ R M+ + VKK PG+S+++
Sbjct: 1394 KLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWID 1444
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 172/372 (46%), Gaps = 39/372 (10%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WNT+I Y+++ ++I F +LR G+ PD T + +A
Sbjct: 963 WNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRA-----------------C 1005
Query: 91 KTGYESDLFISNSLIHMYG-SCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
TG E + F S +H+Y CG I S +++D Y+K G+M+ A
Sbjct: 1006 STGDEGEYFTLGSQVHVYAIKCGII------------NDSFVSTALIDLYSKGGKMDEAE 1053
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
+ + ++ SW+A++ GY+K ++AL F M ++G +E+TL + + A L
Sbjct: 1054 FLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLI 1113
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
L QG+ + Y I G + L + + ++DMY KCG + AL +F + + D + W M
Sbjct: 1114 NLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISR--PDEVAWTTM 1171
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
I G +G +L ++ M++ G+ PDE TF L+ A + + + ++ K +
Sbjct: 1172 ISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVK--L 1229
Query: 330 VPKSEHY--ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+H+ +VD + G V +AY +M + ++L G HG +D A +
Sbjct: 1230 DYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVV-FWNAMLLGLAQHGHVDEALNL 1288
Query: 388 GKKLVE--LQPD 397
+ + +QPD
Sbjct: 1289 FRTMQSNGIQPD 1300
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 170/407 (41%), Gaps = 66/407 (16%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGY-----SKSKNPNKSISLFVKMLRAGVSPD 62
S G++ + +V S+ + WN+++ Y S +N + LF + G S
Sbjct: 657 SKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSIT 716
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
LT L K +++ VH K G+E DLF+S +L+++Y G + AR +FD
Sbjct: 717 RLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFD 776
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFE------LMPE------------------- 157
MP + +V WN ML Y + + A + F P+
Sbjct: 777 KMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNR 836
Query: 158 --------------------RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
N+ +W+ + ++ G A+ F+ + + VT
Sbjct: 837 KRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVT 896
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
LV +L A LD G + +I + +P+ SL++MY+K G + A F +
Sbjct: 897 LVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF--IN 954
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+ D++ WN MI A + E++ F ++ G+ PD+ T +L AC+ G E
Sbjct: 955 SPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGD---EG 1011
Query: 318 WYFFKSLGKR--------GMVPKSEHYACMVDALSRAGQVTEAYEFI 356
YF +LG + G++ S ++D S+ G++ EA EF+
Sbjct: 1012 EYF--TLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA-EFL 1055
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 32/240 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + ++ +S P W T+I GY ++ + + ++S++ M +GV PD T+ L
Sbjct: 1148 GDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLI 1207
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KAS L E +HA + K Y D F+ SL+ MY CG + A VF M + V
Sbjct: 1208 KASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVV 1267
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
WN+ML G A+ G ++ EAL +F M+ G
Sbjct: 1268 FWNAMLLGLAQHGHVD-------------------------------EALNLFRTMQSNG 1296
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
+ ++VT + VL AC+H G + M G++ + + L+D + G I+EA
Sbjct: 1297 IQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEA 1356
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 36/296 (12%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y+ K+ IF WN + + + +I F +LR+ + D +T + A+
Sbjct: 846 YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAV 905
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
+L +HA + K+ + + +SNSL++MY
Sbjct: 906 GADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMY-------------------------- 939
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
+K G + A + F PE +++SW+ +I Y + EA+ F ++ G K +
Sbjct: 940 -----SKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPD 994
Query: 195 EVTLVSVLCACAHLGA---LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ TL SVL AC+ G + Y I G+ + T+LID+Y+K G + EA
Sbjct: 995 QFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEF 1054
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
+ HG K+ D+ WNA++ G +++LE F+ M +GI DEIT + A
Sbjct: 1055 LLHG--KYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA 1108
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 33/229 (14%)
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+A A +L KR HA+I +G D +++N+LI MY CG + AR+VFD +
Sbjct: 622 IAMADLKLGKR-----AHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRD 676
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
V+WNS+L YA+ + S+ +++G+ +F +R+
Sbjct: 677 LVTWNSILAAYAQFAD----------------SSYENVLEGF----------RLFGLLRE 710
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G +TL +L C G + + Y + G L L + +L+++Y K G + +
Sbjct: 711 FGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQ 770
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
A ++F + + D ++WN M+ + F E+L F+ G PD
Sbjct: 771 ARLLFDKMP--ERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPD 817
>gi|293332303|ref|NP_001170755.1| uncharacterized protein LOC100384848 [Zea mays]
gi|238007354|gb|ACR34712.1| unknown [Zea mays]
Length = 464
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/432 (36%), Positives = 232/432 (53%), Gaps = 17/432 (3%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD-----------HLTYPFLAK 71
+ +P + + R ++ S +++++F M+ GV PD H T
Sbjct: 1 MPDPGLVSRTAMARAHAASGQAAQALAVFRDMIADGVLPDNVALAVALAACHTTASL--P 58
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A+G A R VHA I +G D+F+S LI +YG G++ +R +FD MP + +VS
Sbjct: 59 AAGMAAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGEYGELALSRRLFDAMPVRSTVS 118
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
WN+M+ Y + + A ++F MP R+VVSW+ +I GY G + EAL + +M S
Sbjct: 119 WNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISPSS 178
Query: 192 ---KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
N T+ +VL ACA G L+ G + ++ ++ L SLIDMY KCG+I++
Sbjct: 179 CPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRNRMNDDGSLDRSLIDMYVKCGSIEK 238
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
AL VF + + D+ W MI GLAMHG ++L++F MQ GI PD++T +G+L+AC
Sbjct: 239 ALQVFEKAPEAR-DLYSWTTMICGLAMHGRAADALKMFGMMQDNGIHPDDVTLVGVLNAC 297
Query: 309 AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
AH GLV E F SL K + PK EHY C++D L R G++ EAY I M ++P A +
Sbjct: 298 AHCGLVDEGLRHFYSLEKYAITPKIEHYGCVIDLLGRVGRLQEAYNIIRTMRMKPNAVIW 357
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+ L C H ++L EI +L L P V LS++YA + W+ R M
Sbjct: 358 GAFLNACKVHSNVELGEIAAAELTRLDPGDPWAKVMLSSLYAKLQDWNSLARERREMNNL 417
Query: 429 GVKKYPGWSFVE 440
+KK PG S +E
Sbjct: 418 QIKKTPGCSSIE 429
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 137/428 (32%), Positives = 242/428 (56%), Gaps = 7/428 (1%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V + + WN +I Y ++ + ++++ L+ K+ G T+ + A +
Sbjct: 263 EVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVK 322
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
VH+ I + G +S++ ++ +L++MY CG + AR+VF+ M + +V+W++++
Sbjct: 323 ALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIG 382
Query: 138 GYAKCG---EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV-GSKA 193
YA G + AR+VF+ + R+ + W+A+I YV+ G A+ IF EM G K
Sbjct: 383 AYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKP 442
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+ VT ++VL ACA LG L + + + + + L + + +LI+MYA+CG+++EA +F
Sbjct: 443 DAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLF 502
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313
+ + V+ W AM+ + +G E+L+LF EM + G+ PD++T+ +L C HGG
Sbjct: 503 AAAK--EKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGS 560
Query: 314 VMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
+ + W +F + + G+ P ++H+A MVD L R+G++ +A E + MP EP + L
Sbjct: 561 LEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFL 620
Query: 373 TGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432
T C HGKL+L E +++ EL P Y+ +SN+YA W++ + R+ ME RG+KK
Sbjct: 621 TACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKK 680
Query: 433 YPGWSFVE 440
PG SF+E
Sbjct: 681 LPGLSFIE 688
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 170/409 (41%), Gaps = 82/409 (20%)
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD++T+ + + A+H +I + +E D + N+LI MYG C
Sbjct: 5 PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKC--------- 55
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDYKE 178
+S++D AR VFE M +RNVVSW+A+I Y + G E
Sbjct: 56 ------------DSLVD----------ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTE 93
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
ALV++ M G + VT VSVL AC+ L QGR + + GL L +L+
Sbjct: 94 ALVLYWRMNLQGLGTDHVTFVSVLGACSSLA---QGREIHNRVFYSGLDSFQSLANALVT 150
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MYA+ G++ +A +F ++ D WNA+I + G +L +F EM+ + P+
Sbjct: 151 MYARFGSVGDAKRMFQSLQTR--DETSWNAVILAHSQSGDWSGALRIFKEMK-CDMKPNS 207
Query: 299 ITFLGLLSA-----------------CAHG------------------GLVMEAWYFFKS 323
T++ ++S A+G G EA F
Sbjct: 208 TTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDK 267
Query: 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE---PTASMLGSLLTGCMNHGK 380
+ KR MV + C V + G EA E ++ +E T + S+L C +
Sbjct: 268 MKKRDMVSWNVMIGCYV----QNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKA 323
Query: 381 LDLAEIVGKKLVELQPDHD-GRYVGLSNVYAIFKRWDEARTTREAMETR 428
L +V ++E D + L N+YA +EAR AM+ R
Sbjct: 324 LAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNR 372
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 88/190 (46%), Gaps = 11/190 (5%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP--- 67
G+++ + ++ + + W ++ +S+ +++ LF +M GV PD +TY
Sbjct: 493 GSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSIL 552
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
F+ G L + A++ +D F +++ + G G + A+E+ + MP +
Sbjct: 553 FVCTHGGSLEQGWRYFTDMAELHGLAPTADHFA--AMVDLLGRSGRLFDAKELLESMPFE 610
Query: 128 MS-VSWNSMLDGYAKCGEMNM----ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
V+W + L G++ + A +V+EL P + + A+ + Y G +++ +
Sbjct: 611 PDPVAWMTFLTACRIHGKLELGEAAAERVYELDPS-STAPYIAMSNIYAAHGMWEKVASV 669
Query: 183 FEEMRDVGSK 192
++M + G K
Sbjct: 670 RKKMEERGLK 679
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 146/410 (35%), Positives = 231/410 (56%), Gaps = 33/410 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I GY +S K++ LF KM + + DH TY + A L L VHA+
Sbjct: 343 WNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAI 402
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K+G E + ++S S N++ + YAKCG + R+
Sbjct: 403 KSGLEVN-YVSIS-----------------------------NAVANAYAKCGSLEDVRK 432
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
VF M +R+++SW++L+ Y +C ++ +A+ IF MR G N+ T SVL +CA+L
Sbjct: 433 VFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCL 492
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L+ G+ + + GL + ++++L+DMYAKCG + +A VF+ + +D + W A+I
Sbjct: 493 LEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRIS--NADTVSWTAII 550
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GM 329
G A HG V ++L+LF M +G+ P+ +TFL +L AC+HGGLV E +FK + K G+
Sbjct: 551 AGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGL 610
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
VP+ EHYAC+VD LSR G + +A EFI +MP+EP + +LL C HG ++L E+ +
Sbjct: 611 VPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQ 670
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
K++ + ++ YV LSN Y + + + R M+ +GVKK PG S++
Sbjct: 671 KILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCSWI 720
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 109/462 (23%), Positives = 200/462 (43%), Gaps = 76/462 (16%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A S +ID +C++ +S F W +I G +++ F +M G+ PD
Sbjct: 114 AYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFA 173
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
Y + + L EL VHAQI G+ S F+S +L++MY +I + +VF+ M
Sbjct: 174 YSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMT 233
Query: 126 TKMSVSWNSMLDGYAKCG-----------------------------------EMNMARQ 150
VSWN+M+ G+ ++N A++
Sbjct: 234 EVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKE 293
Query: 151 V----FELMPERNVVSWSALIDGYVKCGDYKEALVIF----------------------- 183
V EL + N + +ALID KCG +EA IF
Sbjct: 294 VSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRS 353
Query: 184 ---EEMRDVGSK--ANEV-----TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT-LPL 232
E+ ++ +K N++ T SV A A L L G+ + I GL + + +
Sbjct: 354 GFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSI 413
Query: 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292
++ + YAKCG++++ VF+ +E D++ W +++ + +++E+F+ M+
Sbjct: 414 SNAVANAYAKCGSLEDVRKVFNRMEDR--DLISWTSLVTAYSQCSEWDKAIEIFSNMRAE 471
Query: 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352
GI P++ TF +L +CA+ L+ + K G+ + +VD ++ G + +A
Sbjct: 472 GIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDA 531
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVEL 394
+ ++ T S +++ G HG +D A + +++V+L
Sbjct: 532 KKVFNRISNADTVSWT-AIIAGHAQHGIVDDALQLFRRMVQL 572
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A + G+++ KV + + + + W +++ YS+ +K+I +F M G++P+
Sbjct: 419 NAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQF 478
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T+ + + L E VH I K G + D I ++L+ MY CG + A++VF+ +
Sbjct: 479 TFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRI 538
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+VSW +++ G+A+ G ++D +AL +F
Sbjct: 539 SNADTVSWTAIIAGHAQHG----------------------IVD---------DALQLFR 567
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKC 243
M +G + N VT + VL AC+H G +++G + M GL + ++D+ ++
Sbjct: 568 RMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRV 627
Query: 244 GAIKEAL--IVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G + +A+ I VE ++ ++W ++G +HG V+
Sbjct: 628 GHLNDAMEFISRMPVEPNE---MVWQTLLGACRVHGNVE 663
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
N + Y+KC +++ A ++F+ M +RN SW+ LI G + G + + F EM+ G
Sbjct: 109 NHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIF 168
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
++ +L C L +++ G M+ ++ +G + + T+L++MYAK I+++ V
Sbjct: 169 PDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKV 228
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
F+ + + +V+ WNAMI G + ++ +LF M G+TPD TF+G+ A
Sbjct: 229 FNTMT--EVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKA 281
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/411 (36%), Positives = 229/411 (55%), Gaps = 34/411 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN ++ GY KS K++ F M G+ D +T KASG L + + A
Sbjct: 1067 WNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAI 1126
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G+ +DL++S+ + LD Y KCG+M A +
Sbjct: 1127 KLGFNNDLWVSSGV-------------------------------LDMYIKCGDMPNALE 1155
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F + + V+W+ +I GY++ GD AL ++ MR G + +E T +++ A + L A
Sbjct: 1156 LFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTA 1215
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L+QG+ + ++ SL + TSL+DMY KCG++++A VF ++ + V+ WNAM+
Sbjct: 1216 LEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK--VVFWNAML 1273
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GM 329
GLA HG V E+L LF MQ GI PD++TF+G+LSAC+H GL EA+ +F ++ K G+
Sbjct: 1274 LGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGI 1333
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P+ EHY+C+VDAL RAG++ EA I MP + +ASM +LL C G + A+ V
Sbjct: 1334 TPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVAD 1393
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
KL+ L P YV LSN+YA ++WD+ R M+ + VKK PG+S+++
Sbjct: 1394 KLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWID 1444
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 172/372 (46%), Gaps = 39/372 (10%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WNT+I Y+++ ++I F +LR G+ PD T + +A
Sbjct: 963 WNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRA-----------------C 1005
Query: 91 KTGYESDLFISNSLIHMYG-SCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
TG E + F S +H+Y CG I S +++D Y+K G+M+ A
Sbjct: 1006 STGDEGEYFTLGSQVHVYAIKCGII------------NDSFVSTALIDLYSKGGKMDEAE 1053
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
+ + ++ SW+A++ GY+K ++AL F M ++G +E+TL + + A L
Sbjct: 1054 FLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLI 1113
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
L QG+ + Y I G + L + + ++DMY KCG + AL +F + + D + W M
Sbjct: 1114 NLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISR--PDEVAWTTM 1171
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
I G +G +L ++ M++ G+ PDE TF L+ A + + + ++ K +
Sbjct: 1172 ISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVK--L 1229
Query: 330 VPKSEHY--ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+H+ +VD + G V +AY +M + ++L G HG +D A +
Sbjct: 1230 DYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVV-FWNAMLLGLAQHGHVDEALNL 1288
Query: 388 GKKLVE--LQPD 397
+ + +QPD
Sbjct: 1289 FRTMQSNGIQPD 1300
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 170/407 (41%), Gaps = 66/407 (16%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGY-----SKSKNPNKSISLFVKMLRAGVSPD 62
S G++ + +V S+ + WN+++ Y S +N + LF + G S
Sbjct: 657 SKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSIT 716
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
LT L K +++ VH K G+E DLF+S +L+++Y G + AR +FD
Sbjct: 717 RLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFD 776
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFE------LMPE------------------- 157
MP + +V WN ML Y + + A + F P+
Sbjct: 777 KMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNR 836
Query: 158 --------------------RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
N+ +W+ + ++ G A+ F+ + + VT
Sbjct: 837 KRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVT 896
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
LV +L A LD G + +I + +P+ SL++MY+K G + A F +
Sbjct: 897 LVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF--IN 954
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+ D++ WN MI A + E++ F ++ G+ PD+ T +L AC+ G E
Sbjct: 955 SPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGD---EG 1011
Query: 318 WYFFKSLGKR--------GMVPKSEHYACMVDALSRAGQVTEAYEFI 356
YF +LG + G++ S ++D S+ G++ EA EF+
Sbjct: 1012 EYF--TLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA-EFL 1055
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 32/240 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + ++ +S P W T+I GY ++ + + ++S++ M +GV PD T+ L
Sbjct: 1148 GDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLI 1207
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KAS L E +HA + K Y D F+ SL+ MY CG + A VF M + V
Sbjct: 1208 KASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVV 1267
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
WN+ML G A+ G ++ EAL +F M+ G
Sbjct: 1268 FWNAMLLGLAQHGHVD-------------------------------EALNLFRTMQSNG 1296
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
+ ++VT + VL AC+H G + M G++ + + L+D + G I+EA
Sbjct: 1297 IQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEA 1356
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 36/296 (12%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y+ K+ IF WN + + + +I F +LR+ + D +T + A+
Sbjct: 846 YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAV 905
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
+L +HA + K+ + + +SNSL++MY
Sbjct: 906 GADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMY-------------------------- 939
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
+K G + A + F PE +++SW+ +I Y + EA+ F ++ G K +
Sbjct: 940 -----SKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPD 994
Query: 195 EVTLVSVLCACAHLGA---LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ TL SVL AC+ G + Y I G+ + T+LID+Y+K G + EA
Sbjct: 995 QFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEF 1054
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
+ HG K+ D+ WNA++ G +++LE F+ M +GI DEIT + A
Sbjct: 1055 LLHG--KYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA 1108
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 33/229 (14%)
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+A A +L KR HA+I +G D +++N+LI MY CG + AR+VFD +
Sbjct: 622 IAMADLKLGKR-----AHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRD 676
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
V+WNS+L YA+ + S+ +++G+ +F +R+
Sbjct: 677 LVTWNSILAAYAQFAD----------------SSYENVLEGF----------RLFGLLRE 710
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G +TL +L C G + + Y + G L L + +L+++Y K G + +
Sbjct: 711 FGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQ 770
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
A ++F + + D ++WN M+ + F E+L F+ G PD
Sbjct: 771 ARLLFDKMP--ERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD 817
>gi|297744558|emb|CBI37820.3| unnamed protein product [Vitis vinifera]
Length = 504
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 140/347 (40%), Positives = 209/347 (60%), Gaps = 3/347 (0%)
Query: 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
E D N++I Y D+ A +F MP +++WNSM+ G+A+ G + +AR +F
Sbjct: 155 ERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFAT 214
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQG 214
+P++N+VSW+++I GY GDYK A ++ +M G K + TL SVL C+ AL G
Sbjct: 215 IPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLG 274
Query: 215 RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLA 274
M + I K + +P+ SLI MY++CGAI EA +F V K Q +V+ WNAMIGG A
Sbjct: 275 -MQIHQQITKTVIPDIPINNSLITMYSRCGAIVEARTIFDEV-KLQKEVISWNAMIGGYA 332
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG-KRGMVPKS 333
HGF ++LELF M+ + + P ITF+ +L+ACAH G V E FKS+ + G+ P+
Sbjct: 333 FHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRI 392
Query: 334 EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
EH+A +VD + R GQ+ EA + I MP EP ++ G+LL C H ++LA + + L++
Sbjct: 393 EHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMK 452
Query: 394 LQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L+P+ YV L N+YA +WD A R ME ++K PG+S+V+
Sbjct: 453 LEPESSAPYVLLHNMYADVGQWDNATEMRMMMERNNIRKQPGYSWVD 499
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 132/278 (47%), Gaps = 35/278 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S + GN++ + + + + + WN++I GY + + + L+ +ML G PD
Sbjct: 197 SGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRH 256
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T + A L + +H QI KT D+ I+NSLI MY CG IV AR +FD +
Sbjct: 257 TLSSVLSVCSGFAALHLGMQIHQQITKTVI-PDIPINNSLITMYSRCGAIVEARTIFDEV 315
Query: 125 P-TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
K +SWN+M+ GYA G+ +AL +F
Sbjct: 316 KLQKEVISWNAMIGGYA--------------------------FHGFA-----ADALELF 344
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAK 242
E M+ + + +T +SVL ACAH G + +GRM + M + G+ + SL+D+ +
Sbjct: 345 ELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGR 404
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G ++EA+ + + + + D +W A++G +H V+
Sbjct: 405 HGQLEEAMDLINSM-PFEPDKAVWGALLGACRVHNNVE 441
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 134/295 (45%), Gaps = 24/295 (8%)
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
A ++FD M + VSWN+M+ G+ + G++ A + F MPER+ S SAL+ G ++ G+
Sbjct: 4 ALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGEL 63
Query: 177 KEA-LVIFEEMRDVGSKANEVTLVSVLCAC-AHLGALDQGRMMLRYM--IDKG------L 226
EA ++ R K + V ++L A G +D+ R + + D G
Sbjct: 64 DEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRF 123
Query: 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELF 286
+ S+I Y K I A ++F ++ + D + WN MI G ++E+ LF
Sbjct: 124 ERNVVSWNSMIMCYVKARDIFSARVLFDQMK--ERDTISWNTMISGYVRMSDMEEAWMLF 181
Query: 287 TEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA 346
EM PD +T+ ++S A G + A F ++ ++ +V + M+
Sbjct: 182 QEMP----NPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVS----WNSMIAGYENN 233
Query: 347 GQVTEAYEFICQMPLE---PTASMLGSLLTGCMNHGKLDLAEIVGKKLVE-LQPD 397
G A E QM L+ P L S+L+ C L L + +++ + + PD
Sbjct: 234 GDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIPD 288
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/364 (21%), Positives = 162/364 (44%), Gaps = 66/364 (18%)
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN- 146
Q+ + E ++ N+++ + GD+ A E F MP + S S ++++ G + GE++
Sbjct: 6 QLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGELDE 65
Query: 147 ------------------------------------MARQVFELMP------------ER 158
ARQ+F+ +P ER
Sbjct: 66 AKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFER 125
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
NVVSW+++I YVK D A V+F++M++ + ++ +++ + +++ M+
Sbjct: 126 NVVSWNSMIMCYVKARDIFSARVLFDQMKE----RDTISWNTMISGYVRMSDMEEAWMLF 181
Query: 219 RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGF 278
+ M + +LT S+I +A+ G ++ A +F + Q +++ WN+MI G +G
Sbjct: 182 QEMPNPD-TLTW---NSMISGFAQKGNLELARALFATIP--QKNLVSWNSMIAGYENNGD 235
Query: 279 VKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYAC 338
K + EL+ +M + G PD T +LS C+ + + + K ++P
Sbjct: 236 YKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKT-VIPDIPINNS 294
Query: 339 MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG----KLDLAEIVGKKLVEL 394
++ SR G + EA ++ L+ +++ G HG L+L E++ K +++
Sbjct: 295 LITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELM--KRLKV 352
Query: 395 QPDH 398
+P +
Sbjct: 353 RPTY 356
>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
Length = 653
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/432 (35%), Positives = 241/432 (55%), Gaps = 8/432 (1%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPDHLTYPF--LAK 71
Y+ V S LS P F ++R ++ P ++ +F + RA G L + F LAK
Sbjct: 95 YAVAVFSSLSPPDPFLAAALLRFAHLTQPPLETFRVFSGLRRAHGRDLPFLPFAFSPLAK 154
Query: 72 ASGRLAKRELAVAVHA-QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
++ A HA + G++ F+ NSLI Y +CGD+ AR+V D M K +
Sbjct: 155 SAAAARSLPAAAGAHAVSLLLGGFDKHRFVENSLIGAYVACGDVGAARKVLDEMVVKDVI 214
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW S++ Y++ +M A +VF L P +++V+W+A++ GY + +AL FE+M G
Sbjct: 215 SWTSIVAAYSRSRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAG 274
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+EV+L + ACA LGA+ + + GL + + + L+DMYAKCG I EA
Sbjct: 275 MPIDEVSLTGAISACAQLGAVRRAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEAC 334
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLSACA 309
VF G++ + +V +++MI GLA HG +++ LF +M + + P+ +TF+G+L+AC+
Sbjct: 335 RVFEGMQ--EKNVYTYSSMIVGLASHGRANDAIALFNDMVRRADVEPNHVTFIGVLTACS 392
Query: 310 HGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H G+V E Y+F + R G++P ++HY CMVD L RAG V EA + + M +EP +
Sbjct: 393 HAGMVKEGRYYFAQMKDRYGILPSADHYTCMVDLLGRAGLVIEALDLVKSMTVEPHGGVW 452
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C HG +A++ + L +L+P+ G YV LSN A WDE R+ M R
Sbjct: 453 GALLGACRIHGNTKVAKVAAQHLFKLEPEGIGNYVLLSNTLASAGEWDEVSKVRKLMRIR 512
Query: 429 GVKKYPGWSFVE 440
G+KK P S E
Sbjct: 513 GLKKDPAVSSFE 524
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 124/305 (40%), Gaps = 69/305 (22%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKN--------------------------- 43
G++ + KVL + + W +++ YS+S++
Sbjct: 196 GDVGAARKVLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVFALCPVKDMVAWTAMVTGYA 255
Query: 44 ----PNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
P K++ F +M AG+ D ++ A +L AV + ++G ++
Sbjct: 256 QNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRRAVWIQEIADRSGLGRNVV 315
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
+ + L+ MY CG I A VF+GM K +++SM+ G A G N
Sbjct: 316 VGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHGRAN------------- 362
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEM-RDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
+A+ +F +M R + N VT + VL AC+H G + +GR
Sbjct: 363 ------------------DAIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYF 404
Query: 219 RYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHG--VEKHQSDVLIWNAMIGGLAM 275
M D+ G+ + T ++D+ + G + EAL + VE H +W A++G +
Sbjct: 405 AQMKDRYGILPSADHYTCMVDLLGRAGLVIEALDLVKSMTVEPHGG---VWGALLGACRI 461
Query: 276 HGFVK 280
HG K
Sbjct: 462 HGNTK 466
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 84/191 (43%), Gaps = 8/191 (4%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPFL 69
G ID +C+V + ++ ++++I G + N +I+LF M+ RA V P+H+T+ +
Sbjct: 328 GLIDEACRVFEGMQEKNVYTYSSMIVGLASHGRANDAIALFNDMVRRADVEPNHVTFIGV 387
Query: 70 AKASGRLAKRELAVAVHAQIA-KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A + AQ+ + G ++ + G G ++ A ++ M +
Sbjct: 388 LTACSHAGMVKEGRYYFAQMKDRYGILPSADHYTCMVDLLGRAGLVIEALDLVKSMTVEP 447
Query: 129 SVS-WNSMLDGYAKCGEMNMAR----QVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
W ++L G +A+ +F+L PE + ++ L + G++ E +
Sbjct: 448 HGGVWGALLGACRIHGNTKVAKVAAQHLFKLEPE-GIGNYVLLSNTLASAGEWDEVSKVR 506
Query: 184 EEMRDVGSKAN 194
+ MR G K +
Sbjct: 507 KLMRIRGLKKD 517
>gi|115479089|ref|NP_001063138.1| Os09g0407800 [Oryza sativa Japonica Group]
gi|51091508|dbj|BAD36246.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|51091564|dbj|BAD36301.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113631371|dbj|BAF25052.1| Os09g0407800 [Oryza sativa Japonica Group]
gi|215740507|dbj|BAG97163.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 612
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/426 (37%), Positives = 251/426 (58%), Gaps = 14/426 (3%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
++L+ + P WNT++R + + LF +M P+ + + +G +A
Sbjct: 147 RLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEM------PERDVVSYNSMVAGYVA 200
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+ +LA A + D+ NS+I Y GD+ AR++FD MP + VSWNSMLD
Sbjct: 201 EGDLAGA--RNLFDGMARRDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLD 258
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK-ANEV 196
GYA+ G++ MAR VF+ MP+R++VSW+ ++ Y K D++E L +F+ M G+ NE
Sbjct: 259 GYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEK 318
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT--LPLQTSLIDMYAKCGAIKEALIVFH 254
T VSVL ACA+LG L++GR + + ++ L + L T+L+ MYAKCG ++ A +F+
Sbjct: 319 TFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFN 378
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
+ + V WN+MI G +HG +++LELF EM+ G P+E TF+ +LS+CAHGGLV
Sbjct: 379 SM--GEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLV 436
Query: 315 MEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
+E W+ F + + + PKSEH+ CM+D L RAG + ++ I + + + ++ G L++
Sbjct: 437 LEGWWCFDRMVRFYSIEPKSEHFGCMMDLLGRAGLLEQSENLIENLQGKVSEALWGILMS 496
Query: 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
+ L E VGKKL+E++P G Y+ LSN+YA RWD+ R+ ME +GV+K
Sbjct: 497 ASQTQNNIKLGEFVGKKLIEMRPTEVGPYILLSNIYAAEGRWDDVEKVRKVMEEKGVEKD 556
Query: 434 PGWSFV 439
G S V
Sbjct: 557 AGLSLV 562
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 129/304 (42%), Gaps = 46/304 (15%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS-PDHLTYPFL 69
G+++ + V + I WN ++ Y+K ++ + + LF M+ G + P+ T+ +
Sbjct: 264 GDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSV 323
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYE--SDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
A L E VH + + D+ + +L+ MY CG + ARE+F+ M K
Sbjct: 324 LTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEK 383
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
SWNSM+ GY G+ ++AL +F EM
Sbjct: 384 SVPSWNSMIIGYGLHGQ-------------------------------SEKALELFLEME 412
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQG-----RMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
G + NE T + VL +CAH G + +G RM+ Y I+ ++D+ +
Sbjct: 413 RDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYSIEPKSEHF----GCMMDLLGR 468
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
G ++++ + ++ S+ L W ++ +K L F +++ + P E+
Sbjct: 469 AGLLEQSENLIENLQGKVSEAL-WGILMSASQTQNNIK--LGEFVGKKLIEMRPTEVGPY 525
Query: 303 GLLS 306
LLS
Sbjct: 526 ILLS 529
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 227/397 (57%), Gaps = 3/397 (0%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ WN++I GYS+ + ++LF M V D +T + A L +A +
Sbjct: 1006 VVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVR 1065
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
I E D+++ N+LI Y G + A +VF M K +V+ N+M+ YAK G +
Sbjct: 1066 YIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVS 1125
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
A+++F+ +P ++++SWS++I Y + + ++L +F +M+ K + V + SVL ACAH
Sbjct: 1126 AKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAH 1185
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
LGALD G+ + Y+ + ++ SLIDM+AKCG ++EAL VF +E + D L WN
Sbjct: 1186 LGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDME--EKDTLSWN 1243
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK- 326
++I GLA +GF E+L++F M G P+E+TFLG+L ACA+ LV E F+ +
Sbjct: 1244 SIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIACANRQLVEEGLDHFERMKSV 1303
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
+ P+ +HY C+VD LSRAGQ+ +A FI +MPL P + LL C HG + +AE+
Sbjct: 1304 HNLEPQMKHYGCVVDILSRAGQLEKAVSFISEMPLAPDPVVWRILLGACRTHGNVAVAEM 1363
Query: 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
KKL EL P + + LSN+YA RW +A R
Sbjct: 1364 ATKKLSELDPGNSADSMLLSNIYASADRWSDAMNVRR 1400
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 144/403 (35%), Positives = 234/403 (58%), Gaps = 3/403 (0%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W ++ YS P +++ LF K R ++ D + F+ KA L +HA +
Sbjct: 448 WRAFLKAYSHGPFPLEALHLF-KHARQHLADDTFVFTFVLKACAGLGWHRAGAQLHALVV 506
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ G+E ++ +LI++Y +V AR+VFD MP K VSWN M+ G+A GE+ AR
Sbjct: 507 QKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARL 566
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F+ MP RNVVSW+ LIDGY + Y EAL + M G +E+T+++V+ A ++LG
Sbjct: 567 LFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGG 626
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
+ G M+ Y KG+ + SLID+YAK G+++ +L VF + + +++ W ++I
Sbjct: 627 ILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRR-NLVSWTSII 685
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG-KRGM 329
G AMHG E+LELF EM+ GI P+ ITFL +++AC+HGGLV + FFKS+ + +
Sbjct: 686 SGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNI 745
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P+ +H+ C++D L RAG++ EA + I +P+E ++ LL C +G++ + E K
Sbjct: 746 DPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIK 805
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432
+ +L+ + G + LSNV R+ +A R+ ++ R + K
Sbjct: 806 MISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVK 848
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 183/396 (46%), Gaps = 61/396 (15%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
KV + +P F WNT++RG ++S P +I + K G+ PD+LT+PF+ KA +
Sbjct: 895 KVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTC 954
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+ +H + K G+ D+F+SNSLI++Y +CG + AR VF+ M K VSWNS++
Sbjct: 955 APKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIG 1014
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
GY++ + KE L +F+ M+ +A++VT
Sbjct: 1015 GYSQHNRL-------------------------------KEVLTLFKLMQAEEVQADKVT 1043
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+V V+ AC HLG M+RY+ + + + L +LID Y + G ++ A VF ++
Sbjct: 1044 MVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMK 1103
Query: 258 KHQS-----------------------------DVLIWNAMIGGLAMHGFVKESLELFTE 288
+ D++ W++MI + +SLELF +
Sbjct: 1104 DKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQ 1163
Query: 289 MQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQ 348
MQ + PD + +LSACAH G + + + + + + ++D ++ G
Sbjct: 1164 MQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGC 1223
Query: 349 VTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
V EA + M + T S S++ G N+G D A
Sbjct: 1224 VQEALQVFTDMEEKDTLSW-NSIILGLANNGFEDEA 1258
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 124/252 (49%), Gaps = 7/252 (2%)
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
A +VF+ + W+ L+ G + K+A+V +++ ++ G K + +T VL ACA
Sbjct: 893 AHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAK 952
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
A +G M ++I G L + + SLI +YA CGA+ A VF+ E DV+ WN
Sbjct: 953 TCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFN--EMLVKDVVSWN 1010
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327
++IGG + H +KE L LF MQ + D++T + ++SAC H G A + +
Sbjct: 1011 SLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHN 1070
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ ++D R GQ+ A + QM + T + L +++T G L +
Sbjct: 1071 HIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVT-LNAMITAYAKGGNL----VS 1125
Query: 388 GKKLVELQPDHD 399
KK+ + P+ D
Sbjct: 1126 AKKIFDQIPNKD 1137
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 122/270 (45%), Gaps = 33/270 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN+ + K+ + N + W+++I YS++ + + S+ LF +M RA V PD + +
Sbjct: 1121 GNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVL 1180
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L +L +H + + ++D + NSLI M+ CG + A +VF M K ++
Sbjct: 1181 SACAHLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTL 1240
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS++ G A G FE EAL IF M G
Sbjct: 1241 SWNSIILGLANNG--------FE-----------------------DEALDIFHSMLTEG 1269
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ NEVT + VL ACA+ +++G M L + ++D+ ++ G +++A
Sbjct: 1270 PRPNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKA 1329
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
+ F D ++W ++G HG V
Sbjct: 1330 -VSFISEMPLAPDPVVWRILLGACRTHGNV 1358
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 122/271 (45%), Gaps = 34/271 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++Y+ + + + W +I GY+++ ++++L M+ G+SP +T +
Sbjct: 559 GEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVI 618
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS- 129
A L + ++ K G SD + NSLI +Y G + + +VFD M + +
Sbjct: 619 PAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNL 678
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSW S++ G+A G EAL +F EMR
Sbjct: 679 VSWTSIISGFAMHGL-------------------------------SVEALELFAEMRRA 707
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKE 248
G K N +T +SV+ AC+H G ++QG + M+ + + + +IDM + G + E
Sbjct: 708 GIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCE 767
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279
A + G+ + +V +W ++G + +G V
Sbjct: 768 AEQIIEGLPM-EVNVTVWRILLGCCSKYGEV 797
>gi|125605648|gb|EAZ44684.1| hypothetical protein OsJ_29310 [Oryza sativa Japonica Group]
Length = 612
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/426 (37%), Positives = 251/426 (58%), Gaps = 14/426 (3%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
++L+ + P WNT++R + + LF +M P+ + + +G +A
Sbjct: 147 RLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEM------PERDVVSYNSMVAGYVA 200
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+ +LA A + D+ NS+I Y GD+ AR++FD MP + VSWNSMLD
Sbjct: 201 EGDLAGA--RNLFDGMARRDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLD 258
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK-ANEV 196
GYA+ G++ MAR VF+ MP+R++VSW+ ++ Y K D++E L +F+ M G+ NE
Sbjct: 259 GYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEK 318
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT--LPLQTSLIDMYAKCGAIKEALIVFH 254
T VSVL ACA+LG L++GR + + ++ L + L T+L+ MYAKCG ++ A +F+
Sbjct: 319 TFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFN 378
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
+ + V WN+MI G +HG +++LELF EM+ G P+E TF+ +LS+CAHGGLV
Sbjct: 379 SM--GEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLV 436
Query: 315 MEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
+E W+ F + + + PKSEH+ CM+D L RAG + ++ I + + + ++ G L++
Sbjct: 437 LEGWWCFDRMVRFYSIEPKSEHFGCMMDLLGRAGLLEQSENLIENLQGKVSEALWGILMS 496
Query: 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
+ L E VGKKL+E++P G Y+ LSN+YA RWD+ R+ ME +GV+K
Sbjct: 497 ASQTQNNIKLGEFVGKKLIEMRPTEVGPYILLSNIYAAEGRWDDVEKVRKVMEEKGVEKD 556
Query: 434 PGWSFV 439
G S V
Sbjct: 557 AGLSLV 562
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 129/304 (42%), Gaps = 46/304 (15%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS-PDHLTYPFL 69
G+++ + V + I WN ++ Y+K ++ + + LF M+ G + P+ T+ +
Sbjct: 264 GDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSV 323
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYE--SDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
A L E VH + + D+ + +L+ MY CG + ARE+F+ M K
Sbjct: 324 LTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEK 383
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
SWNSM+ GY G+ ++AL +F EM
Sbjct: 384 SVPSWNSMIIGYGLHGQ-------------------------------SEKALELFLEME 412
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQG-----RMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
G + NE T + VL +CAH G + +G RM+ Y I+ ++D+ +
Sbjct: 413 RDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYSIEPKSEHF----GCMMDLLGR 468
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
G ++++ + ++ S+ L W ++ +K L F +++ + P E+
Sbjct: 469 AGLLEQSENLIENLQGKVSEAL-WGILMSASQTQNNIK--LGEFVGKKLIEMRPTEVGPY 525
Query: 303 GLLS 306
LLS
Sbjct: 526 ILLS 529
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/432 (35%), Positives = 240/432 (55%), Gaps = 8/432 (1%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPDHLTYPFLAKAS 73
Y+ V S +S P F ++R ++ P +F + RA G L + F A
Sbjct: 90 YALNVFSAVSPPDPFLAAALLRFAFLTQPPLLPFRVFSHLRRAHGAELPFLPFAFSTLAK 149
Query: 74 GRLAKRELAVAVHAQIAKT---GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A R L A A G++ F+ NSLI Y +CGD+ AR+VFD M K +
Sbjct: 150 SATASRSLPAAAAAHAVSVLVGGFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVI 209
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW S++ Y + G+M A +VF P +++V+W+A++ GY + +AL +F+ M ++G
Sbjct: 210 SWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELG 269
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+EV+L + ACA LGAL + + G + + + L+DMYAKCG I EA
Sbjct: 270 MVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEAS 329
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLSACA 309
VF+G++ + +V +++MI GLA HG E++ LF EM + P+ +TF+G+L+AC+
Sbjct: 330 KVFYGMQ--EKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACS 387
Query: 310 HGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H G+V E Y+F + K G++P ++HYACMVD L RAG V EA + + M + P +
Sbjct: 388 HAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVW 447
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C HGK ++A++V + L +L+P+ G YV LSN+ A +W+E R M +
Sbjct: 448 GALLGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSNILASAGKWEEVSKVRILMRKQ 507
Query: 429 GVKKYPGWSFVE 440
+KK P S E
Sbjct: 508 RLKKDPAVSLFE 519
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/423 (36%), Positives = 234/423 (55%), Gaps = 35/423 (8%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
+ +S +F WN +IRGY+ + +ISL+ +M G+ PD T+PF+ KA L+
Sbjct: 58 LFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSA 117
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
E +H + ++G ESD+F+ +LI MY
Sbjct: 118 MEEGKKIHKDVIRSGLESDVFVGAALIDMY------------------------------ 147
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
AKCG + ARQVF+ + ER+VV W++++ Y + G E+L + M G K E T
Sbjct: 148 -AKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTF 206
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
V + A A G L QG+ + Y G ++T+L+DMYAK G++ A +F +E+
Sbjct: 207 VISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEE 266
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
+ V+ WNAMI G AMHG E+L+LF EM+ + PD ITF+G+L+AC+HGGL+ E
Sbjct: 267 KR--VVSWNAMITGYAMHGHANEALDLFKEMK-GKVLPDHITFVGVLAACSHGGLLNEGK 323
Query: 319 YFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
F+S+ + P +HY CM+D L G++ EAY+ I +M +EP A + G+LL C
Sbjct: 324 MHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKI 383
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
HG +++ E+ +KLVEL+PD G YV LSN+YA +WD R+ M +G+KK S
Sbjct: 384 HGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACS 443
Query: 438 FVE 440
++E
Sbjct: 444 WIE 446
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 144/282 (51%), Gaps = 17/282 (6%)
Query: 127 KMSVSWNSML-----DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
++ +S+N +L + Y C + A +F+ + +RN+ W+ +I GY G Y+ A+
Sbjct: 29 QVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAIS 88
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
++ +MRD G ++ T VL AC+ L A+++G+ + + +I GL + + +LIDMYA
Sbjct: 89 LYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYA 148
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
KCG ++ A VF ++ + DV+ WN+M+ + +G ESL L M G+ P E TF
Sbjct: 149 KCGCVESARQVFDKID--ERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTF 206
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+ ++A A GL+ + + G + ++D +++G V A ++
Sbjct: 207 VISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLF-ELLE 265
Query: 362 EPTASMLGSLLTGCMNHGK----LDL-AEIVGKKLVELQPDH 398
E +++TG HG LDL E+ GK L PDH
Sbjct: 266 EKRVVSWNAMITGYAMHGHANEALDLFKEMKGKVL----PDH 303
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 137/291 (47%), Gaps = 40/291 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + +V + + WN+++ YS++ P++S++L M G+ P T+
Sbjct: 151 GCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISI 210
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
AS +H + G+ES+ + +L+ MY G + AR +F+ + K V
Sbjct: 211 AASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVV 270
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+M+ GYA G N EAL +F+EM+
Sbjct: 271 SWNAMITGYAMHGHAN-------------------------------EALDLFKEMKG-K 298
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ +T V VL AC+H G L++G+M R MI D + T+ T +ID+ CG ++EA
Sbjct: 299 VLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEA 358
Query: 250 --LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
LI+ VE D +W A++ +HG V E EL E ++V + PD+
Sbjct: 359 YKLIMEMRVE---PDAGVWGALLHSCKIHGNV-EMGELALE-KLVELEPDD 404
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/388 (37%), Positives = 226/388 (58%), Gaps = 3/388 (0%)
Query: 54 MLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113
M R+ V PD + + A+H+ + + D +S +L++MY SC D
Sbjct: 1 MKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCAD 60
Query: 114 IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKC 173
+ A ++++ + K V +M+ GYAK G++ +A +F MP ++VVSWSA+I GY +
Sbjct: 61 MEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAES 120
Query: 174 GDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
EAL +F +M+ G K +E+T++SV+ ACA++GAL++ R + ++ + + LP+
Sbjct: 121 SKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIG 180
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
+LIDM++KCG++ AL VF+ + Q +V+ W ++I AMHG + +L LF M+ G
Sbjct: 181 NALIDMFSKCGSLTLALDVFNAMP--QKNVVTWTSIITASAMHGDGRSALTLFENMKSEG 238
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEA 352
I P+ +TFLGLL AC H GLV E FK + ++ + P EHY CMVD L RA + +A
Sbjct: 239 IQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQA 298
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412
+ I M L P + GSLL C HG L+L KK++EL P+H G V LSN+YA +
Sbjct: 299 ADLIQSMHLRPNVVIWGSLLAACRMHGDLELGTFAAKKILELDPNHGGAQVLLSNIYAEY 358
Query: 413 KRWDEARTTREAMETRGVKKYPGWSFVE 440
W++ + R ME +G K G S++E
Sbjct: 359 GNWNDVKEVRGVMEVQGTWKKKGCSWME 386
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 138/290 (47%), Gaps = 39/290 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + + + + + W+ +I GY++S P ++++LF M R+GV PD +T +
Sbjct: 90 GKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVI 149
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + E A +H+ + L I N+LI M+ CG + A +VF+ MP K V
Sbjct: 150 SACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVV 209
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W S +++ SA+ GD + AL +FE M+ G
Sbjct: 210 TWTS-------------------------IITASAMH------GDGRSALTLFENMKSEG 238
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT---SLIDMYAKCGAIK 247
+ N VT + +L AC H G +++GR++ + M+ + P+ ++D+ + +
Sbjct: 239 IQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQ--YRIEPMHEHYGCMVDLLGRAKLLG 296
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
+A + + + +V+IW +++ MHG ++ L F +I+ + P+
Sbjct: 297 QAADLIQSMHL-RPNVVIWGSLLAACRMHGDLE--LGTFAAKKILELDPN 343
>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
Length = 841
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 172/520 (33%), Positives = 252/520 (48%), Gaps = 101/520 (19%)
Query: 4 FSALSYLGNI-DYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD 62
SA +Y + Y VL H +P F W IR ++ ++ +L+V+M R G+ P
Sbjct: 41 JSASNYSATVAQYVHSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLWPT 100
Query: 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGY---------------------------- 94
KA R+A R +++H Q+ K G+
Sbjct: 101 TFALSSALKACARIAYRMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARK 160
Query: 95 ------ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
E ++ NS++ Y GD+V A+ VFD +P K +SWNSM+ GYA+ G+M A
Sbjct: 161 MFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKA 220
Query: 149 RQVFELMPERNVVSWSALIDGYV-------------------------------KCGDY- 176
+F+ MPERN SW+A+I GYV KCGD
Sbjct: 221 LSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQXNNVSWMTMISGYSKCGDVD 280
Query: 177 ------------------------------KEALVIFEEM--RDVGSKANEVTLVSVLCA 204
KEAL +F M DV + +E+TL SV+ A
Sbjct: 281 SACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISA 340
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
C+ LG L G + YM G+ + L T+L+D+YAKCG+I +A +FHG+ K D++
Sbjct: 341 CSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRK--KDLV 398
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
+ AMI G ++G ++++LF EM I P+ ITF+GLL+A H GLV E + F S+
Sbjct: 399 AYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNLITFIGLLTAYNHAGLVEEGYRCFTSM 458
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
K +VP +HY MVD L RAG++ EA E I MP++P A + G+LL C H ++
Sbjct: 459 KKYNLVPSVDHYGIMVDLLGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFG 518
Query: 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
EI + EL+PD G LSN+YA +RWD+ + R++
Sbjct: 519 EIAAQHCFELEPDTTGYXSLLSNIYASGERWDDVKRLRKS 558
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/410 (36%), Positives = 227/410 (55%), Gaps = 34/410 (8%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK 91
N++IR Y S+ +F M + + PD T+P + KA+ +L + +H + +
Sbjct: 58 NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117
Query: 92 TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQV 151
G+ D++ S +L+H+Y +C +S+S A Q+
Sbjct: 118 MGFICDVYTSTALVHLYCTC----------------LSIS---------------DASQL 146
Query: 152 FELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGAL 211
F+ MPERN V+W+ALI GY + +A+ F M G++ +E T+V VL AC+HLGA
Sbjct: 147 FDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAF 206
Query: 212 DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIG 271
+QG+ + ++ L L + + T+LIDMYAKCGA+ E VF E + +V WN +I
Sbjct: 207 NQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFE--EIREKNVYTWNVLIS 264
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMV 330
G AM+G +L+ F+ M + PDE+TFLG+L AC H GLV E + F S+ ++ G+
Sbjct: 265 GYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQ 324
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKK 390
P+ EHY CMVD L RAG + EA E I M +EP + +LL C HG L E + K+
Sbjct: 325 PRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKR 384
Query: 391 LVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L+EL+P++ YV LSN+Y+ +RW E R M RG++K PG S +E
Sbjct: 385 LIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIE 434
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 105/251 (41%), Gaps = 33/251 (13%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I GY+ ++ K+I F ML G P T + A L +H I
Sbjct: 158 WNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIY 217
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
++F+ +LI MY CG + +VF+ + K +WN ++ GYA G+ + A Q
Sbjct: 218 HNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQ 277
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
F M N K +EVT + VLCAC H G
Sbjct: 278 AFSRMLMENF-------------------------------KPDEVTFLGVLCACCHQGL 306
Query: 211 LDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
+ +GR M + GL + ++D+ + G ++EAL + + + D +IW A+
Sbjct: 307 VTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSI-EPDPIIWRAL 365
Query: 270 IGGLAMHGFVK 280
+ +HG K
Sbjct: 366 LCACRVHGNTK 376
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/410 (36%), Positives = 227/410 (55%), Gaps = 34/410 (8%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK 91
N++IR Y S+ +F M + + PD T+P + KA+ +L + +H + +
Sbjct: 58 NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117
Query: 92 TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQV 151
G+ D++ S +L+H+Y +C +S+S A Q+
Sbjct: 118 MGFICDVYTSTALVHLYCTC----------------LSIS---------------DASQL 146
Query: 152 FELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGAL 211
F+ MPERN V+W+ALI GY + +A+ F M G++ +E T+V VL AC+HLGA
Sbjct: 147 FDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAF 206
Query: 212 DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIG 271
+QG+ + ++ L L + + T+LIDMYAKCGA+ E VF E + +V WN +I
Sbjct: 207 NQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFE--EIREKNVYTWNVLIS 264
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMV 330
G AM+G +L+ F+ M + PDE+TFLG+L AC H GLV E + F S+ ++ G+
Sbjct: 265 GYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQ 324
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKK 390
P+ EHY CMVD L RAG + EA E I M +EP + +LL C HG L E + K+
Sbjct: 325 PRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKR 384
Query: 391 LVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L+EL+P++ YV LSN+Y+ +RW E R M RG++K PG S +E
Sbjct: 385 LIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIE 434
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 105/251 (41%), Gaps = 33/251 (13%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I GY+ ++ K+I F ML G P T + A L +H I
Sbjct: 158 WNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIY 217
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
++F+ +LI MY CG + +VF+ + K +WN ++ GYA G+ + A Q
Sbjct: 218 HNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQ 277
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
F M N K +EVT + VLCAC H G
Sbjct: 278 AFSRMLMENF-------------------------------KPDEVTFLGVLCACCHQGL 306
Query: 211 LDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
+ +GR M + GL + ++D+ + G ++EAL + + + D +IW A+
Sbjct: 307 VTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSI-EPDPIIWRAL 365
Query: 270 IGGLAMHGFVK 280
+ +HG K
Sbjct: 366 LCACRVHGNTK 376
>gi|255567729|ref|XP_002524843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535903|gb|EEF37563.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 524
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 163/436 (37%), Positives = 241/436 (55%), Gaps = 13/436 (2%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
++ + SH ++NT+ R Y ++ LF ML P+ T+P L KA+
Sbjct: 38 FNPTISSHSKWKSTLFYNTLTRAYLNFGQTYNTVYLFTLMLAHQTPPNSHTFPSLIKAA- 96
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
L+ + ++H Q+ K G D F+ SL+ Y G + A +VFDG+ V +N+
Sbjct: 97 TLSFPSIGTSLHTQVIKRGVLCDPFVQTSLLAFYSQIGCLYNAHKVFDGILHPWIVEYNA 156
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM---RDVG- 190
MLD YAK +M A +F+ M +R+VVSW+ +I G+ + G ++EA+ F M DV
Sbjct: 157 MLDAYAKNNDMGSAILLFKRMLKRDVVSWTTVISGFSRSGLFREAINFFRVMIAHEDVSL 216
Query: 191 --SKANEVTLVSVLCACAHL---GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
K NE T VSVL +CA L G+L G+ M +I + LT+ + T+LID Y K G
Sbjct: 217 GLVKPNEATYVSVLSSCASLDEGGSLFLGKQMHGSIIRNEVVLTVFIGTALIDFYGKVGC 276
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
+ A+ VF+ + Q + WNAMI LA +G K++L++F M+ G +P+E+TF+ +L
Sbjct: 277 LNSAIRVFNSMTIKQ--ICSWNAMISCLANNGREKQALDMFEMMEEKGPSPNEVTFVVVL 334
Query: 306 SACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
+AC LV F+S+ + P EHY C+VD L RAG + EA E I MP EP
Sbjct: 335 TACTRAKLVQFGMRLFQSMWSDYSVKPIMEHYGCVVDLLGRAGLLREASEIIRSMPFEPD 394
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
AS+LG+LL C HG LA VG +L+ LQP H G++V LSN+ A ++W A R+A
Sbjct: 395 ASVLGALLGACKIHGANKLANEVGGRLLRLQPLHCGQFVLLSNINAGLEKWSVAADVRKA 454
Query: 425 METRGVKKYPGWSFVE 440
M G+ K P +S +
Sbjct: 455 MVEAGISKVPAYSLIN 470
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 119/319 (37%), Gaps = 73/319 (22%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML------------ 55
S +G + + KV + +P I +N ++ Y+K+ + +I LF +ML
Sbjct: 131 SQIGCLYNAHKVFDGILHPWIVEYNAMLDAYAKNNDMGSAILLFKRMLKRDVVSWTTVIS 190
Query: 56 ---RAG----------------------VSPDHLTYPFLAKASGRL---AKRELAVAVHA 87
R+G V P+ TY + + L L +H
Sbjct: 191 GFSRSGLFREAINFFRVMIAHEDVSLGLVKPNEATYVSVLSSCASLDEGGSLFLGKQMHG 250
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
I + +FI +LI YG G + A VF+ M K SWN+M+ A G
Sbjct: 251 SIIRNEVVLTVFIGTALIDFYGKVGCLNSAIRVFNSMTIKQICSWNAMISCLANNGREKQ 310
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
A +FE+M E+ G NEVT V VL AC
Sbjct: 311 ALDMFEMMEEK-------------------------------GPSPNEVTFVVVLTACTR 339
Query: 208 LGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
+ G + + M D + + ++D+ + G ++EA + + + D +
Sbjct: 340 AKLVQFGMRLFQSMWSDYSVKPIMEHYGCVVDLLGRAGLLREASEIIRSM-PFEPDASVL 398
Query: 267 NAMIGGLAMHGFVKESLEL 285
A++G +HG K + E+
Sbjct: 399 GALLGACKIHGANKLANEV 417
>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
Length = 607
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 160/418 (38%), Positives = 239/418 (57%), Gaps = 38/418 (9%)
Query: 29 FYWNTVIRGYSKSKNPN---KSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE-LAVA 84
F NT+IR ++ S P+ ++ + F MLR+ V P+ T+PFL KA L + +
Sbjct: 94 FLVNTLIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQ 153
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
HA K G+ +D ++SN+LIHMY G GE
Sbjct: 154 AHAAALKFGFATDQYVSNTLIHMYSCFG------------------------------GE 183
Query: 145 -MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
+ AR VF+ M + +VV+WSA+I GYV+ G +A+ +F EM+ G + +EVT++ VL
Sbjct: 184 FLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVLA 243
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
A A LGAL+ R + R++ +G+ ++ L +LID AKCG + A+ VF G+E + V
Sbjct: 244 AAADLGALELARWVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGME--ERTV 301
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
+ W ++I LAM G KE++ +F M+ G+ PD++ F+G+L+AC+H G+V E + +F S
Sbjct: 302 VSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDS 361
Query: 324 LG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ + G+ PK EHY CMVD RAG V A EFI MP++P + +L+ C HG+L+
Sbjct: 362 MKMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLE 421
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L E + + L+ P H+ YV LSNVYA+ +RW E R M RG+KK PG S VE
Sbjct: 422 LGESITRNLLNEYPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVE 479
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 114/261 (43%), Gaps = 33/261 (12%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
V + + W+ +I GY + + ++ LF +M +GV PD +T + A+ L
Sbjct: 190 NVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLG 249
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
ELA V + + G + + N+LI CGD+ A VF GM + VSW S++D
Sbjct: 250 ALELARWVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVID 309
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
A G KEA+ +FE M+ G + ++V
Sbjct: 310 ALAMEGR-------------------------------GKEAVAVFEAMKTAGVRPDDVV 338
Query: 198 LVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
+ VL AC+H G +D+G M ++ G+ + ++DM+ + G ++ A+ H +
Sbjct: 339 FIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTM 398
Query: 257 EKHQSDVLIWNAMIGGLAMHG 277
+ + +IW ++ HG
Sbjct: 399 PM-KPNPIIWRTLVAACRAHG 418
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 31/205 (15%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
AL+ G++D + V + + W +VI + +++++F M AGV PD +
Sbjct: 279 ALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVV 338
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGY------------ESDLFISNSLIHMYGSCGD 113
+ + L HA + GY + + ++ M+G G
Sbjct: 339 FIGV-----------LTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGM 387
Query: 114 IVYAREVFDGMPTKMS-VSWNSML-----DGYAKCGEMNMARQVFELMPERNVVSWSALI 167
+ A E MP K + + W +++ G + GE ++ R + P ++ L
Sbjct: 388 VERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLELGE-SITRNLLNEYPAHE-ANYVMLS 445
Query: 168 DGYVKCGDYKEALVIFEEMRDVGSK 192
+ Y +KE I EM G K
Sbjct: 446 NVYALTQRWKEKSEIRREMSKRGIK 470
>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 785
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 151/434 (34%), Positives = 249/434 (57%), Gaps = 5/434 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS-PDHLTYPFL 69
G +D + + + WN +I GY++ +++ +F KML S PD T
Sbjct: 225 GLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASA 284
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD-GMPTKM 128
A L +L +HA I +T +++ + N+LI MY G + A+++ + M + +
Sbjct: 285 LSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNL 344
Query: 129 SV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
V ++ ++LDGY K G++N AR++F+ + R+VV+W+A+I GYV+ G ++A+ +F M
Sbjct: 345 DVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMI 404
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G K N TL ++L + L +LD GR + G + ++ + +LI MYAK G+I
Sbjct: 405 KEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSIN 464
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
+A VF+ + + D + W +MI LA HG +E+L LF M GI PD IT++G+LSA
Sbjct: 465 DARWVFNLIH-WKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSA 523
Query: 308 CAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C H GLV + ++ + ++P HYACM+D RAG + EA+ FI MP+EP
Sbjct: 524 CTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVI 583
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
GSLL C H ++LAE+ ++L+ ++P++ G Y L+NVY+ +W+ A R++M+
Sbjct: 584 AWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMK 643
Query: 427 TRGVKKYPGWSFVE 440
+GVKK G+S+V+
Sbjct: 644 DKGVKKDQGFSWVQ 657
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 137/257 (53%), Gaps = 30/257 (11%)
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
++HA+I K G +F+ N+L++ Y G I A VFD MP K SWN +L GYAK G
Sbjct: 34 SIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGG 93
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
+ A +VFE MPE + VSW+A+I GY + G ++ A+ +F EM + TL +VL
Sbjct: 94 RLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLA 153
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG-------- 255
+CA + L GR + +++ GLS + + SL++MYAK G A IVF
Sbjct: 154 SCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSS 213
Query: 256 ----VEKH-----------------QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
+ H + DV+ WNAMI G HGF +E+L++F++M +
Sbjct: 214 WNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSS 273
Query: 295 T-PDEITFLGLLSACAH 310
+ PD+ T LSACA+
Sbjct: 274 SKPDKFTLASALSACAN 290
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 165/330 (50%), Gaps = 5/330 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + +V + P W +I GY++ +I +F +M+ V P T +
Sbjct: 93 GRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVL 152
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ + + VH+ + K G S + ++NSL++MY GD V A+ VFD M K +
Sbjct: 153 ASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTS 212
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDV 189
SWN+M+ + + G +++A+ FE M ER+VVSW+A+I GY + G +EAL IF +M D
Sbjct: 213 SWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDS 272
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
SK ++ TL S L ACA+L L G+ + ++I + +LI MY+K G ++ A
Sbjct: 273 SSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIA 332
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ DV+ + A++ G G + + +F +++ D + + ++
Sbjct: 333 QKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRV----RDVVAWTAMIVGYV 388
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACM 339
G +A F+S+ K G P + A M
Sbjct: 389 QNGFNQDAMELFRSMIKEGPKPNNYTLATM 418
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 133/286 (46%), Gaps = 38/286 (13%)
Query: 1 MLSFSAL----SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR 56
+++F+AL LG+I+ + ++ L + W +I GY ++ ++ LF M++
Sbjct: 346 VIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIK 405
Query: 57 AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
G P++ T + S LA + +HA ++G S + +SN+LI MY G I
Sbjct: 406 EGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSIND 465
Query: 117 AREVFDGMPTKM-SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
AR VF+ + K +++W SM+ A+ G G+
Sbjct: 466 ARWVFNLIHWKRDTITWTSMIIALAQHG-----------------------------LGE 496
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
EAL +FE M + G K + +T V VL AC H+G ++QGR M + + P +
Sbjct: 497 --EALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYA 554
Query: 236 -LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+ID++ + G ++EA + + DV+ W +++ +H V+
Sbjct: 555 CMIDLFGRAGLLQEAHAFIENMPI-EPDVIAWGSLLASCKVHKNVE 599
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 155/438 (35%), Positives = 236/438 (53%), Gaps = 41/438 (9%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G++D + V +S+ + + ++I GY++ +++ LF +M G+SPD T
Sbjct: 342 SKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVT 401
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ R + VH I + D+F+SN+L+ MY
Sbjct: 402 AVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMY------------------- 442
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF---- 183
AKCG M A VF M ++++SW+ +I GY K EAL +F
Sbjct: 443 ------------AKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 490
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
EE R +E T+ VL ACA L A D+GR + Y++ G + SL+DMYAKC
Sbjct: 491 EEKR---FSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKC 547
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
GA+ A ++F + D++ W MI G MHGF KE++ LF +M+ GI DEI+F+
Sbjct: 548 GALLLAHMLFDDIA--SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVS 605
Query: 304 LLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
LL AC+H GLV E W FF + + P EHYAC+VD L+R G + +AY FI MP+
Sbjct: 606 LLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIP 665
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P A++ G+LL GC H + LAE V +K+ EL+P++ G YV ++N+YA ++W++ + R
Sbjct: 666 PDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLR 725
Query: 423 EAMETRGVKKYPGWSFVE 440
+ + RG++K PG S++E
Sbjct: 726 KRIGQRGLRKNPGCSWIE 743
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 98/370 (26%), Positives = 167/370 (45%), Gaps = 73/370 (19%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + +V + + +WN ++ +KS + + SI LF KM+ +GV D T+ ++
Sbjct: 143 GDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVS 202
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
K+ L +H I K+G+ + NSL+ Y + AR+VFD M + +
Sbjct: 203 KSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVI 262
Query: 131 SWNSMLDGYAKCG-----------------EMNMAR--QVFELMPERNVVSW-------- 163
SWNS+++GY G E+++A VF + ++S
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIG 322
Query: 164 ------------SALIDGYVKCGDYK-------------------------------EAL 180
+ L+D Y KCGD EA+
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAV 382
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+FEEM + G + T+ +VL CA LD+G+ + ++ + L + + +L+DMY
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMY 442
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFT-EMQIVGITPDEI 299
AKCG+++EA +VF E D++ WN +IGG + + + E+L LF ++ +PDE
Sbjct: 443 AKCGSMQEAELVFS--EMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDER 500
Query: 300 TFLGLLSACA 309
T +L ACA
Sbjct: 501 TVACVLPACA 510
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/431 (23%), Positives = 165/431 (38%), Gaps = 89/431 (20%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK 91
NT +R + +S N ++ L + + P L A + K V I
Sbjct: 65 NTQLRRFCESGNLENAVKLLCVSGKWDIDPRTLCSVLQLCADSKSLKD--GKEVDNFIRG 122
Query: 92 TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQV 151
G+ D + + L MY +CGD+ A VFD + + ++ WN +++ AK G+ + + +
Sbjct: 123 NGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGL 182
Query: 152 FELM----------------------------------------PERNVVSWSALIDGYV 171
F+ M ERN V ++L+ Y+
Sbjct: 183 FKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG-NSLVAFYL 241
Query: 172 KCGDYKEALVIFEEM--RDV-----------------------------GSKANEVTLVS 200
K A +F+EM RDV G + + T+VS
Sbjct: 242 KNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVS 301
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
V CA + GR + + S +L+DMY+KCG + A VF E
Sbjct: 302 VFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFR--EMSD 359
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA--- 317
V+ + +MI G A G E+++LF EM+ GI+PD T +L+ CA L+ E
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV 419
Query: 318 --WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS---MLGSLL 372
W LG V + ++D ++ G + EA +M ++ S ++G
Sbjct: 420 HEWIKENDLGFDIFVSNA-----LMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 474
Query: 373 TGCMNHGKLDL 383
C + L L
Sbjct: 475 KNCYANEALSL 485
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 235/431 (54%), Gaps = 35/431 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + V +S + W ++I Y++ +++I LF +M R GVSPD T +
Sbjct: 47 GVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVL 106
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A E VH I + +S++F+ N+L+ MY
Sbjct: 107 HACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMY---------------------- 144
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
AKCG M A VF MP ++++SW+ +I GY K EAL +F +M +
Sbjct: 145 ---------AKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMV-LE 194
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K + TL +L ACA L +LD+G+ + +++ G + +L+DMY KCG A
Sbjct: 195 MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLAR 254
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
++F + D++ W MI G MHGF ++ F EM+ GI PDE++F+ +L AC+H
Sbjct: 255 LLFDMIP--TKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSH 312
Query: 311 GGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GL+ E W FF + V PK EHYAC+VD L+R+G++ AY+FI MP+EP A++ G
Sbjct: 313 SGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWG 372
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL+GC H + LAE V + + EL+P++ G YV L+N YA ++W+E + R+ + RG
Sbjct: 373 ALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRG 432
Query: 430 VKKYPGWSFVE 440
+KK PG S++E
Sbjct: 433 LKKNPGCSWIE 443
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 12/205 (5%)
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+VS+L ACA+ G + GR + + + +L+DMYAKCG + A++VF +
Sbjct: 1 MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
V+ W ++I A G E++ LF EM G++PD T +L ACA G +
Sbjct: 61 VRT--VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENG 118
Query: 318 WYFFKSLGKRGMVPKSEHYAC--MVDALSRAGQVTEAYEFICQMPLEPTAS---MLGSLL 372
+ + M +S + C ++D ++ G + +A +MP++ S M+G
Sbjct: 119 KDVHNYIRENDM--QSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYS 176
Query: 373 TGCMNHGKLDLAEIVGKKLVELQPD 397
+ + L L G ++E++PD
Sbjct: 177 KNSLPNEALSL---FGDMVLEMKPD 198
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 136/279 (48%), Positives = 187/279 (67%), Gaps = 3/279 (1%)
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
SW+++I GYV+CG KEA+ +F +M + G K NEVT+V+VL ACA LGALD G + Y
Sbjct: 194 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS 253
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
G + + +LIDMY KCG ++EA VF +E + V+ W+AMIGGLAMHG +E
Sbjct: 254 NRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME--ERTVVSWSAMIGGLAMHGRAEE 311
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMV 340
+L LF++M VGI P+ +TF+GLL AC+H GL+ E FF S+ + G++P+ EHY CMV
Sbjct: 312 ALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMV 371
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400
D LSRAG + EA+EFI MP++P + G+LL C H +++AE K L+EL P +DG
Sbjct: 372 DLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDG 431
Query: 401 RYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
YV LSN+YA RW++ R+ M+ R VKK PGWS +
Sbjct: 432 YYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSI 470
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 131/300 (43%), Gaps = 47/300 (15%)
Query: 26 PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAV 85
P F WN+ ++ ++ +P +I LF ++ + V PD T + +A L +
Sbjct: 124 PETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRIL 183
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF------------------------ 121
H + K G+ S S+I Y CG A +F
Sbjct: 184 HGVVEKVGFRS----WTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACAD 239
Query: 122 ----------------DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSA 165
G + +S N+++D Y KCG + A +VFE M ER VVSWSA
Sbjct: 240 LGALDLGMRIHEYSNRHGFKRNVRIS-NTLIDMYVKCGCLEEACKVFEEMEERTVVSWSA 298
Query: 166 LIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DK 224
+I G G +EAL +F +M VG + N VT + +L AC+H+G + +GR M D
Sbjct: 299 MIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDY 358
Query: 225 GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLE 284
G+ + ++D+ ++ G + EA + + V +W A++G +H V+ + E
Sbjct: 359 GIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGV-VWGALLGACRVHKNVEMAEE 417
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 16/187 (8%)
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
+F VEK + + +WN+ + LA +++ LF ++ + PD T +L AC +
Sbjct: 115 IFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNL 174
Query: 312 GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTASML 368
+ + K G + M+ + G+ EA +M ++ +
Sbjct: 175 LDLSNGRILHGVVEKVGF----RSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTV 230
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHD-GRYVGLSN----VYAIFKRWDEARTTRE 423
++L C + G LDL G ++ E H R V +SN +Y +EA E
Sbjct: 231 VAVLAACADLGALDL----GMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFE 286
Query: 424 AMETRGV 430
ME R V
Sbjct: 287 EMEERTV 293
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 79/192 (41%), Gaps = 23/192 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ +CKV + + W+ +I G + +++ LF M + G+ P+ +T+ L
Sbjct: 276 GCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLL 335
Query: 71 KASGRL-----AKRELA-----VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
A + +R A + QI G DL L+H A E
Sbjct: 336 HACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLH---------EAHEF 386
Query: 121 FDGMPTKMS-VSWNSMLDGYAKCGEMNMARQVFELMPERNVVS---WSALIDGYVKCGDY 176
MP K + V W ++L + MA + + + E + ++ + L + Y + G +
Sbjct: 387 ILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRW 446
Query: 177 KEALVIFEEMRD 188
++ + + M+D
Sbjct: 447 EDTARVRKFMKD 458
>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/433 (35%), Positives = 240/433 (55%), Gaps = 5/433 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFL 69
G + + + + I WN++I GYS+ +++ +F KML + PD+ T +
Sbjct: 222 GQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASI 281
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM- 128
A L K + +HA I + E+ + N+LI MY G + AR + + T
Sbjct: 282 LSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNL 341
Query: 129 -SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+++ S+LDGY K G + AR++F + +R+VV+W+A+I GYV+ G + +AL +F M
Sbjct: 342 NIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMV 401
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
+ G + N TL ++L + L L+ G+ + I G S T + +LI MYAK G I
Sbjct: 402 NEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNIN 461
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VF + + +++ W +MI LA HG KE++ LF M VG+ PD IT++G+LSA
Sbjct: 462 VAKRVF-DLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSA 520
Query: 308 CAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C H GLV + ++ + + + P HYACM+D RAG + EAY FI MP+EP
Sbjct: 521 CTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNI 580
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
GSLL C H DLA++ ++L+ + P + G Y+ L+NVY+ +W+ A TR+ M+
Sbjct: 581 AWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMK 640
Query: 427 TRGVKKYPGWSFV 439
RGV+K G S++
Sbjct: 641 DRGVRKEKGISWI 653
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 171/335 (51%), Gaps = 5/335 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN + S ++L + + W +I GY++ + +I +F KM+ V P T +
Sbjct: 90 GNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVL 149
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ ++ +H+ + K G S + ++ SL++MY CGD V A+ VFD M K
Sbjct: 150 SSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNIS 209
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+WN+++ Y + G+ +A FE MP+R++VSW+++I GY + G EALVIF +M +
Sbjct: 210 TWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEP 269
Query: 191 S-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
S K + TL S+L ACA+L L+ G+ + Y++ + + +LI MYAK G ++ A
Sbjct: 270 SLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIA 329
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
++ +++ + +++ G G VK + E+F +++ D + + ++
Sbjct: 330 RLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLR----DRDVVAWTAMIVGYV 385
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS 344
GL +A F+ + G P S A M+ S
Sbjct: 386 QNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSS 420
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 142/275 (51%), Gaps = 30/275 (10%)
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ + + S R+ +VH QI K G +++ N+L+ Y G + +A VFD MP
Sbjct: 13 FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
K + SWN+++ GYAK G ++R++ MP+ + VSW+A+I GY + G + A+ +F +
Sbjct: 73 LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M ++ T+ +VL +CA LD GR + +++ GL +P+ TSL++MYAKCG
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192
Query: 246 IKEALIVFHGV----------------------------EK-HQSDVLIWNAMIGGLAMH 276
A +VF + EK D++ WN+MI G +
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252
Query: 277 GFVKESLELFTEM-QIVGITPDEITFLGLLSACAH 310
G+ E+L +F++M + PD T +LSACA+
Sbjct: 253 GYNLEALVIFSKMLNEPSLKPDNFTLASILSACAN 287
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 131/283 (46%), Gaps = 40/283 (14%)
Query: 1 MLSFSAL----SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR 56
+++F++L + LGN+ + ++ + L + + W +I GY ++ N ++ LF M+
Sbjct: 343 IIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVN 402
Query: 57 AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
G P+ T + S L E +HA K G S ++N+LI MY G+I
Sbjct: 403 EGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINV 462
Query: 117 AREVFDGMPT--KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
A+ VFD +P K VSW SM+ M +A+ G
Sbjct: 463 AKRVFD-LPNGKKEIVSWTSMI--------MALAQH-----------------------G 490
Query: 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQ 233
KEA+ +FE M VG K + +T V VL AC H+G ++QGR M + + TL
Sbjct: 491 LGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHY 550
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ID+Y + G ++EA + + + D + W +++ +H
Sbjct: 551 ACMIDLYGRAGLLQEAYLFIESMPI-EPDNIAWGSLLASCKIH 592
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 13/184 (7%)
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
GR + +I KGL L + L +L+ YAK G+++ A VF E WN +I G
Sbjct: 29 GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFD--EMPLKSTFSWNTLISGY 86
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA-WYFFKSLGKRGMVPK 332
A G + S L EM D +++ ++ GL A W F K + +R VP
Sbjct: 87 AKQGNFEVSRRLLYEMP----DCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISER--VPP 140
Query: 333 SEHYACMVDALSRAGQVTE----AYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
S+ V + A Q + + F+ ++ L + SLL G +A++V
Sbjct: 141 SQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVF 200
Query: 389 KKLV 392
++
Sbjct: 201 DRMT 204
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/431 (34%), Positives = 231/431 (53%), Gaps = 34/431 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + +L L + W +I GY++ +++ LF +M G+ D++ +
Sbjct: 464 GELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAI 523
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + +HAQ +GY DL I N+L+ +Y
Sbjct: 524 SACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLY---------------------- 561
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
A+CG A FE + ++ +SW+ALI G+ + G +EAL +F +M G
Sbjct: 562 ---------ARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAG 612
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+AN T S + A A+ + QG+ + MI G LI +Y+KCG+I++A
Sbjct: 613 VEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAK 672
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
F E + +V+ WNAMI G + HG+ E++ LF EM+ +G+ P+ +TF+G+LSAC+H
Sbjct: 673 REF--FEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSH 730
Query: 311 GGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E +F+S+ K G+VPK EHY C+VD L RA + A EFI +MP+EP A +
Sbjct: 731 VGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWR 790
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL+ C H +++ E + L+EL+P+ YV LSN+YA+ +WD TR+ M+ RG
Sbjct: 791 TLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRG 850
Query: 430 VKKYPGWSFVE 440
VKK PG S++E
Sbjct: 851 VKKEPGRSWIE 861
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 175/353 (49%), Gaps = 34/353 (9%)
Query: 27 RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVH 86
+ WN ++ Y + N ++S +F++M G+ P+ TYP + + L +L +H
Sbjct: 379 NVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIH 438
Query: 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
Q+ K+G++ ++++ + LI MY AK GE++
Sbjct: 439 TQVIKSGFQFNVYVCSVLIDMY-------------------------------AKHGELD 467
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
AR + + + E +VVSW+A+I GY + + EAL +F+EM + G +++ + S + ACA
Sbjct: 468 TARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACA 527
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
+ AL+QG+ + G S L + +L+ +YA+CG ++A + F ++ D + W
Sbjct: 528 GIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDA--KDNISW 585
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
NA+I G A G +E+L++F++M G+ + TF +SA A+ + + + K
Sbjct: 586 NALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIK 645
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
G ++E ++ S+ G + +A +MP E +++TG HG
Sbjct: 646 TGYDSETEASNVLITLYSKCGSIEDAKREFFEMP-EKNVVSWNAMITGYSQHG 697
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 104/418 (24%), Positives = 183/418 (43%), Gaps = 68/418 (16%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + K+ + + + +WN VI G K ++ + LF M+ V+PD T+ +
Sbjct: 59 GEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVL 118
Query: 71 KA-SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+A SG A ++ +HA+I G+ S + N LI +Y G + A+ VF+ + K S
Sbjct: 119 RACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDS 178
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
VSW +M+ G ++ G + EA+++F +M
Sbjct: 179 VSWVAMISGLSQNGRED-------------------------------EAILLFCQMHKS 207
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
SVL AC + G + +++ GLS + +L+ +Y++ G + A
Sbjct: 208 AVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAA 267
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+F + H+ D + +N++I GLA GF +L+LF +MQ+ + PD +T LLSACA
Sbjct: 268 EQIFSKM--HRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACA 325
Query: 310 HGGLVMEAWYFFKSLGKRGM----------------------------VPKSEH---YAC 338
G + + K GM ++E+ +
Sbjct: 326 SVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNV 385
Query: 339 MVDALSRAGQVTEAYEFICQMPLE---PTASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
M+ A + G ++E+Y QM +E P S+L C + G LDL E + ++++
Sbjct: 386 MLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIK 443
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 172/370 (46%), Gaps = 38/370 (10%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D + V L W +I G S++ +++I LF +M ++ V P + +
Sbjct: 161 GHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVL 220
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A ++ +L +H I K G S+ F+ N+L+ +Y G+++
Sbjct: 221 SACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLI--------------- 265
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
A Q+F M R+ +S+++LI G + G AL +FE+M+
Sbjct: 266 ----------------AAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDC 309
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K + VT+ S+L ACA +GA +G+ + Y+I G+S L ++ SL+D+Y KC I+ A
Sbjct: 310 MKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAH 369
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
F E +V++WN M+ G + ES +F +MQI G+ P++ T+ +L C
Sbjct: 370 EYFLTTETE--NVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTS 427
Query: 311 GGLVMEAWYFFKSLGKRGMVPKSEHYAC--MVDALSRAGQVTEAYEFICQMPLEPTASML 368
G + + K G + Y C ++D ++ G++ A + ++ E S
Sbjct: 428 LGALDLGEQIHTQVIKSGF--QFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWT 485
Query: 369 GSLLTGCMNH 378
+++ G H
Sbjct: 486 -AMIAGYTQH 494
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 37/225 (16%)
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M + G +AN T + + C + G+L + + + G L + LID+Y G
Sbjct: 1 MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
+ A+ +F + S+V WN +I GL + L LF+ M +TPDE TF +L
Sbjct: 61 VDNAIKLFDDIPS--SNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVL 118
Query: 306 SACA------------HGGLVMEAW--------------------YFFKSLGKRGMVPKS 333
AC+ H ++ + K + +R + S
Sbjct: 119 RACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDS 178
Query: 334 EHYACMVDALSRAGQVTEAYEFICQM---PLEPTASMLGSLLTGC 375
+ M+ LS+ G+ EA CQM + PT + S+L+ C
Sbjct: 179 VSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSAC 223
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 86/192 (44%), Gaps = 9/192 (4%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+I+ + + + + WN +I GYS+ ++++SLF +M + G+ P+H+T+
Sbjct: 663 SKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFV 722
Query: 68 FLAKASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A + ++ ++K G ++ + G + ARE + MP
Sbjct: 723 GVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPI 782
Query: 127 KM-SVSWNSMLDGYA-----KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
+ ++ W ++L + GE AR + EL PE + ++ L + Y G +
Sbjct: 783 EPDAMIWRTLLSACTVHKNIEIGEF-AARHLLELEPE-DSATYVLLSNMYAVSGKWDYRD 840
Query: 181 VIFEEMRDVGSK 192
+ M+D G K
Sbjct: 841 RTRQMMKDRGVK 852
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 146/410 (35%), Positives = 231/410 (56%), Gaps = 33/410 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I GY +S K++ LF KM + + DH TY + A L L VHA+
Sbjct: 343 WNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAI 402
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K+G E + +S+S N++ + YAKCG + R+
Sbjct: 403 KSGLEVNY-----------------------------VSIS-NAVANAYAKCGSLEDVRK 432
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
VF M +R+++SW++L+ Y +C ++ +A+ IF MR G N+ T SVL +CA+L
Sbjct: 433 VFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCL 492
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L+ G+ + + GL + ++++L+DMYAKCG + +A VF+ + +D + W A+I
Sbjct: 493 LEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRIS--NADTVSWTAII 550
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GM 329
G A HG V ++L+LF M +G+ P+ +TFL +L AC+HGGLV E +FK + K G+
Sbjct: 551 AGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGL 610
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
VP+ EHYAC+VD LSR G + +A EFI +MP+EP + +LL C HG ++L E+ +
Sbjct: 611 VPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQ 670
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
K++ + ++ YV LSN Y + + + R M+ +GVKK PG S++
Sbjct: 671 KILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSWI 720
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 109/462 (23%), Positives = 200/462 (43%), Gaps = 76/462 (16%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A S +ID +C++ +S F W +I G +++ F +M G+ PD
Sbjct: 114 AYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFA 173
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
Y + + L EL VHAQI G+ S F+S +L++MY +I + +VF+ M
Sbjct: 174 YSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMT 233
Query: 126 TKMSVSWNSMLDGYAKCG-----------------------------------EMNMARQ 150
VSWN+M+ G+ ++N A++
Sbjct: 234 EVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKE 293
Query: 151 V----FELMPERNVVSWSALIDGYVKCGDYKEALVIF----------------------- 183
V EL + N + +ALID KCG +EA IF
Sbjct: 294 VSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRS 353
Query: 184 ---EEMRDVGSK--ANEV-----TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT-LPL 232
E+ ++ +K N++ T SV A A L L G+ + I GL + + +
Sbjct: 354 GFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSI 413
Query: 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292
++ + YAKCG++++ VF+ +E D++ W +++ + +++E+F+ M+
Sbjct: 414 SNAVANAYAKCGSLEDVRKVFNRMEDR--DLISWTSLVTAYSQCSEWDKAIEIFSNMRAE 471
Query: 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352
GI P++ TF +L +CA+ L+ + K G+ + +VD ++ G + +A
Sbjct: 472 GIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDA 531
Query: 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVEL 394
+ ++ T S +++ G HG +D A + +++V+L
Sbjct: 532 KKVFNRISNADTVSWT-AIIAGHAQHGIVDDALQLFRRMVQL 572
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A + G+++ KV + + + + W +++ YS+ +K+I +F M G++P+
Sbjct: 419 NAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQF 478
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T+ + + L E VH I K G + D I ++L+ MY CG + A++VF+ +
Sbjct: 479 TFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRI 538
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+VSW +++ G+A+ G ++D +AL +F
Sbjct: 539 SNADTVSWTAIIAGHAQHG----------------------IVD---------DALQLFR 567
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKC 243
M +G + N VT + VL AC+H G +++G + M GL + ++D+ ++
Sbjct: 568 RMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRV 627
Query: 244 GAIKEAL--IVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G + +A+ I VE ++ ++W ++G +HG V+
Sbjct: 628 GHLNDAMEFISRMPVEPNE---MVWQTLLGACRVHGNVE 663
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
N + Y+KC +++ A ++F+ M +RN SW+ LI G + G + + F EM+ G
Sbjct: 109 NHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIF 168
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
++ +L C L +++ G M+ ++ +G + + T+L++MYAK I+++ V
Sbjct: 169 PDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKV 228
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
F+ + + +V+ WNAMI G + ++ +LF M G+TPD TF+G+ A
Sbjct: 229 FNTMT--EVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKA 281
>gi|115450020|ref|NP_001048611.1| Os02g0830000 [Oryza sativa Japonica Group]
gi|48716334|dbj|BAD22946.1| pentatricopeptide repeat-containing protein-like [Oryza sativa
Japonica Group]
gi|113538142|dbj|BAF10525.1| Os02g0830000 [Oryza sativa Japonica Group]
gi|125584254|gb|EAZ25185.1| hypothetical protein OsJ_08985 [Oryza sativa Japonica Group]
Length = 500
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/431 (36%), Positives = 237/431 (54%), Gaps = 21/431 (4%)
Query: 29 FYWNTVIRGY---SKSKNPNKSISLFVKMLRAGVS----PDHLTYPFLAKASGRLAK--- 78
F+ N+++R S S +P +++ LF ++ R + P+ T+ FL AS LA
Sbjct: 39 FFPNSLLRSLLPPSHSHSPLRALRLFPRLRRIIATNPFFPNAYTFSFLLTASASLAPLPH 98
Query: 79 ----RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD-GMPTKMSVSWN 133
R L ++HA ++ ++SN LIH Y SC + AR VFD + + SW
Sbjct: 99 AASPRVLVESLHALAILVACDAHAYVSNGLIHAYASCALLCSARRVFDVNVSCRDVCSWT 158
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
S+L Y + ++ AR +F+ MP + ++W+A++ YV G + EA+ +F+EM +
Sbjct: 159 SLLTAYGRAARLHHARALFDAMPHKTTIAWAAILSAYVGAGSFAEAVDVFQEMLRARVRP 218
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP--LQTSLIDMYAKCGAIKEALI 251
N ++SVL AC LGAL+QGR + +++ ++ + T+L+DMYAKCG+++ A
Sbjct: 219 NRAVILSVLAACGALGALEQGRWVHAHLVAAHGAMAKDGMVATALVDMYAKCGSLETARQ 278
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF G+ + DV + AM+ GL+ HG E++ELF MQ G+ P+E+TF+ +LSAC
Sbjct: 279 VFSGMA--ERDVFAYTAMVSGLSDHGRCVEAIELFGRMQEEGVRPNEVTFICVLSACGRA 336
Query: 312 GLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GLV A S+ GM EHY MVD L RAG V EA E + +MP+ P + +LG+
Sbjct: 337 GLVGRAREILGSMSAVHGMEAGVEHYGSMVDVLGRAGMVEEALEVVRRMPMRPDSYVLGA 396
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQ-PDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
LL C+ G + E V + EL D G V LSN+YA +W+E R ME R
Sbjct: 397 LLNACVARGDTEGGEEVAAMMAELGLDDRSGVQVQLSNLYAGRGKWEEVVGVRRGMEERK 456
Query: 430 VKKYPGWSFVE 440
V K PG S VE
Sbjct: 457 VVKVPGCSMVE 467
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 159/434 (36%), Positives = 239/434 (55%), Gaps = 40/434 (9%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
IDY+ ++ + NP ++ + +I G+ S N ++I L+ +ML + PD+ + KA
Sbjct: 87 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKA 146
Query: 73 SG-RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
G +LA RE VH++ K G+ S+ + ++ +YG
Sbjct: 147 CGSQLALRE-GREVHSRALKLGFSSNRLVRLRIMELYG---------------------- 183
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPE----RNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
KCGE+ AR+VFE MPE ++ V W+A+IDG+V+ + AL F M+
Sbjct: 184 ---------KCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQ 234
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
+ NE T+V VL AC+ LGAL+ GR + YM + L L + +LI+MY++CG+I
Sbjct: 235 GENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSID 294
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
EA VF E DV+ +N MI GL+M+G ++++ELF M + P +TF+G+L+A
Sbjct: 295 EAQTVFD--EMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNA 352
Query: 308 CAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+HGGLV + F S+ + V P+ EHY CMVD L R G++ EAY+ I M + P
Sbjct: 353 CSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHI 412
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
MLG+LL+ C H L+L E V K+L + G YV LS+VYA +W EA R M+
Sbjct: 413 MLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMK 472
Query: 427 TRGVKKYPGWSFVE 440
G++K PG S +E
Sbjct: 473 EAGMQKEPGCSSIE 486
>gi|147816693|emb|CAN62262.1| hypothetical protein VITISV_013985 [Vitis vinifera]
Length = 531
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 161/435 (37%), Positives = 236/435 (54%), Gaps = 6/435 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+ I Y+ V + + +P +F +N +IRG + P S+ L+ K+L G++PD+ TY F+
Sbjct: 70 MSQIYYALLVFNRIPSPDVFAYNAMIRGLTLGNCPYDSLLLYNKLLLGGLTPDNYTYTFV 129
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
K L VH Q+ K G D I SLIHMY + A V +
Sbjct: 130 LKVCSHLKAIFEGKQVHCQVIKAGVAPDTHIHTSLIHMYAKSDCLACAEGVLAECSQENV 189
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--- 186
++ NSM+ GY G + AR +F+ M ++ +WS +I GY K G ++EALV+F EM
Sbjct: 190 LAINSMISGYMSQGHVEKARAMFDKMGAKDAATWSGMITGYTKNGMHEEALVMFREMMMV 249
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ G + NE LVS L A A LGALDQGR + Y+ G +++ L T L+DMYAKCG+I
Sbjct: 250 SNSGVQPNESALVSSLSATACLGALDQGRWIHAYIRRIGAKISITLGTGLVDMYAKCGSI 309
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ +F E Q DV+ W M+ G AMHG ++ +LF EM G P+E+ F+ +LS
Sbjct: 310 HCSYKLFR--EMQQRDVVTWGVMMSGFAMHGQARKCFQLFDEMVAGGTRPNEVIFVAILS 367
Query: 307 ACAHGG-LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC+H G L + YF + + G+ P EHY CMVD L RAGQ+ EA E I MP EPTA
Sbjct: 368 ACSHAGYLELGHHYFNQMVTDFGIRPSVEHYGCMVDLLGRAGQLAEAEELIISMPEEPTA 427
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
+ G+LL+ C H L ++L++L+P RY +++ +EA +
Sbjct: 428 VIWGALLSACRIHKDLRRGRRAFRQLMQLEPLRGDRYKLAGQMFSSAGEKEEADNVTRFI 487
Query: 426 ETRGVKKYPGWSFVE 440
+ ++ G SF+E
Sbjct: 488 KENELETTRGSSFIE 502
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 10/192 (5%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
+LD Y ++ A VF +P +V +++A+I G ++L+++ ++ G +
Sbjct: 63 LLDSYVSMSQIYYALLVFNRIPSPDVFAYNAMIRGLTLGNCPYDSLLLYNKLLLGGLTPD 122
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK--CGAIKEALIV 252
T VL C+HL A+ +G+ + +I G++ + TSLI MYAK C A E ++
Sbjct: 123 NYTYTFVLKVCSHLKAIFEGKQVHCQVIKAGVAPDTHIHTSLIHMYAKSDCLACAEGVL- 181
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
E Q +VL N+MI G G V+++ +F +M D T+ G+++ G
Sbjct: 182 ---AECSQENVLAINSMISGYMSQGHVEKARAMFDKMG----AKDAATWSGMITGYTKNG 234
Query: 313 LVMEAWYFFKSL 324
+ EA F+ +
Sbjct: 235 MHEEALVMFREM 246
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 3/177 (1%)
Query: 215 RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLA 274
R + I GL P L+D Y I AL+VF+ + DV +NAMI GL
Sbjct: 42 RQIHAQFIVSGLLARPPNAGRLLDSYVSMSQIYYALLVFNRIPS--PDVFAYNAMIRGLT 99
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSE 334
+ +SL L+ ++ + G+TPD T+ +L C+H + E + K G+ P +
Sbjct: 100 LGNCPYDSLLLYNKLLLGGLTPDNYTYTFVLKVCSHLKAIFEGKQVHCQVIKAGVAPDTH 159
Query: 335 HYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL 391
+ ++ +++ + A + + E + + S+++G M+ G ++ A + K+
Sbjct: 160 IHTSLIHMYAKSDCLACAEGVLAECSQENVLA-INSMISGYMSQGHVEKARAMFDKM 215
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 160/436 (36%), Positives = 240/436 (55%), Gaps = 39/436 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA--GVSPDHLTYPF 68
N+ + + +HL++P IF N ++ +++ + +I F + + +PD T+
Sbjct: 38 ANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTS 97
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
+ KA LA +HA + K G+ES+LF+ NSLI M
Sbjct: 98 VLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDM--------------------- 136
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELM--PERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
Y K G + +AR +F+ M +RNVV W+A+I GY + Y +A+ +F M
Sbjct: 137 ----------YFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMM 186
Query: 187 RDVGSKA-NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
+ G N+VTLVSVL ACAHLGALD G+ + ++ + ++L L L +L DMYAKCG
Sbjct: 187 QQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGC 246
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
I EA VF+ +E + DV+ W+ +I GLAM+G E+ F EM G P+++ F+GLL
Sbjct: 247 ITEARRVFNKME--ERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLL 304
Query: 306 SACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
+AC H GLV + F ++ K G+ PK EHY C+VD LSRAG++ +A + I MP++P
Sbjct: 305 TACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPN 364
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
+ G+LL GC + + V + ++EL DH G YV L+NVY+ R D+A R
Sbjct: 365 VIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLR 424
Query: 425 METRGVKKYPGWSFVE 440
M GV K PG S++E
Sbjct: 425 MRENGVLKTPGCSWIE 440
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 6/224 (2%)
Query: 142 CGEMNMARQ---VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN--EV 196
C + RQ +F + N+ + +A + + + A+ F + N E
Sbjct: 34 CADHANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEF 93
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
T SVL ACA L + G+ + + +G L ++ SLIDMY K G + A +F +
Sbjct: 94 TFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEM 153
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACAHGGLVM 315
+V+ WNAMI G A + +++E+F MQ G+ P+++T + +L ACAH G +
Sbjct: 154 FVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALD 213
Query: 316 EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
+ + +R M + D ++ G +TEA +M
Sbjct: 214 LGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKM 257
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/432 (34%), Positives = 238/432 (55%), Gaps = 35/432 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I + + L + W +I GY++ + ++ L M +A V+P+ +T+ +
Sbjct: 197 GDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASIL 256
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ A E VH I ++GY +L++ NSLI MY
Sbjct: 257 QGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMY---------------------- 294
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
KCG + AR++F +P R+VV+W+A++ GY + G + EA+ +F M+ G
Sbjct: 295 ---------CKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQG 345
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K +++T SVL +C+ L +G+ + + ++ G +L + LQ++L+ MYAKCG++ +A
Sbjct: 346 IKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDAS 405
Query: 251 IVFHGVEKHQSDVLIWNAMIGG-LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+VF+ + + +V+ W A+I G A HG +E+LE F +M+ GI PD++TF +LSAC
Sbjct: 406 LVFN--QMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACT 463
Query: 310 HGGLVMEAWYFFKSLG-KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E F+S+ G+ P EHY+C VD L RAG + EA I MP P S+
Sbjct: 464 HVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVW 523
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL+ C H ++ E + +++L PD DG YV LS++YA R+++A R+ ME R
Sbjct: 524 GALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKR 583
Query: 429 GVKKYPGWSFVE 440
V K PG S++E
Sbjct: 584 DVVKEPGQSWIE 595
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/378 (28%), Positives = 172/378 (45%), Gaps = 35/378 (9%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S + G++ + +V + + I W +I + ++ + M AG PD
Sbjct: 89 LSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDK 148
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T+ L A +L VH +I + G E + + SL+ MY
Sbjct: 149 VTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMY--------------- 193
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
AKCG+++ AR +F+ +PE+NVV+W+ LI GY + G AL +
Sbjct: 194 ----------------AKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELL 237
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
E M+ N++T S+L C AL+ G+ + RY+I G L + SLI MY KC
Sbjct: 238 ETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKC 297
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G ++EA +F + DV+ W AM+ G A GF E++ LF MQ GI PD++TF
Sbjct: 298 GGLEEARKLFSDLP--HRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTS 355
Query: 304 LLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
+L++C+ + E + L G + +V ++ G + +A QM E
Sbjct: 356 VLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMS-ER 414
Query: 364 TASMLGSLLTG-CMNHGK 380
+++TG C HG+
Sbjct: 415 NVVAWTAIITGCCAQHGR 432
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 110/402 (27%), Positives = 174/402 (43%), Gaps = 78/402 (19%)
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
L + RL E VHA I K+G + + ++ N+L+ MY
Sbjct: 53 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMY-------------------- 92
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
AKCG + AR+VF+ + +RN+VSW+A+I+ +V EA +E M+
Sbjct: 93 -----------AKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKL 141
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G K ++VT VS+L A + L G+ + +++ GL L + TSL+ MYAKCG I +
Sbjct: 142 AGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISK 201
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A ++F + + +V+ W +I G A G V +LEL MQ + P++ITF +L C
Sbjct: 202 ARVIFDRLP--EKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGC 259
Query: 309 A------HG-----------------------------GLVMEAWYFFKSLGKRGMVPKS 333
HG G + EA F L R +V
Sbjct: 260 TTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVT-- 317
Query: 334 EHYACMVDALSRAGQVTEA---YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKK 390
+ MV ++ G EA + + Q ++P S+LT C + L + + ++
Sbjct: 318 --WTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQ 375
Query: 391 LVELQPDHDGRYV--GLSNVYAIFKRWDEARTTREAMETRGV 430
LV + D Y+ L ++YA D+A M R V
Sbjct: 376 LVHAGYNLD-VYLQSALVSMYAKCGSMDDASLVFNQMSERNV 416
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 101/213 (47%), Gaps = 3/213 (1%)
Query: 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
K G KEAL I M G++ +L CA L +L+QGR + ++ G+
Sbjct: 24 KTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 83
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
L+ +L+ MYAKCG++ +A VF + +++ W AMI E+ + + M++
Sbjct: 84 LENTLLSMYAKCGSLTDARRVFDSIRDR--NIVSWTAMIEAFVAGNKNLEAFKCYETMKL 141
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTE 351
G PD++TF+ LL+A + L+ + + G+ + +V ++ G +++
Sbjct: 142 AGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISK 201
Query: 352 AYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
A ++P E L+ G G++D+A
Sbjct: 202 ARVIFDRLP-EKNVVTWTLLIAGYAQQGQVDVA 233
>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 610
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/421 (35%), Positives = 230/421 (54%), Gaps = 7/421 (1%)
Query: 25 NPR--IFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPDHLTYPFLAKASGRLAKREL 81
PR I+ +++++ S S +P ++ + ML A + PDH +A RL R L
Sbjct: 64 TPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRL 123
Query: 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
+HA + Y D + +SL+ MY CG R+VFD M K SV W +++ GYA
Sbjct: 124 GRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYAS 183
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS- 200
G A Q+F MP RN+ +W+ALI G V G+ A+ +F EMR G + ++ ++S
Sbjct: 184 NGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSI 243
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
V+ A L A GR + + G + + +LIDMY+KC I A VF G+
Sbjct: 244 VIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFR- 302
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
DV+ W M+ G A HG +E+L L+ M + G P+E+TF+GL+ AC+H GLV +
Sbjct: 303 -DVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQL 361
Query: 321 FKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
F+S+ + G+ P+ +HY C +D LSR+G + EA E + MP EP + G+LL+ C +
Sbjct: 362 FESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYK 421
Query: 380 KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
++ + KL+EL+P Y+ LSNVYA+ +WD R+ M ++K PG+S++
Sbjct: 422 DAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWI 481
Query: 440 E 440
E
Sbjct: 482 E 482
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 123/295 (41%), Gaps = 65/295 (22%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNK------------------------ 46
G+ D KV +S W ++ GY+ + +
Sbjct: 154 GSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLV 213
Query: 47 -------SISLFVKMLRAGVS-PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDL 98
++ LFV+M R GV D + S LA L +H + G+ S++
Sbjct: 214 NTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNM 273
Query: 99 FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
+ N+LI MY C DI+ AREVF+G+ + +SW +M+ G A+ G
Sbjct: 274 IVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRA------------- 320
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
+EAL +++ M G+K NEVT V ++ AC+H G + +GR +
Sbjct: 321 ------------------EEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLF 362
Query: 219 RYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
M ++ G++ L T +D+ ++ G + EA + + ++ D W A++
Sbjct: 363 ESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTM-PYEPDEATWGALLSA 416
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 3/157 (1%)
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS-K 192
+++ YAK + A +F+ P R++ +S+L+ + AL I M +
Sbjct: 43 ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALH 102
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ + SV A L + GR + + + + +++SL+DMY KCG+ + V
Sbjct: 103 PDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKV 162
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
F + S ++W A++ G A +G +E+L+LF M
Sbjct: 163 FDSMSAKNS--VVWTALVSGYASNGRSEEALQLFRSM 197
>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g37310-like [Cucumis sativus]
Length = 635
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/412 (36%), Positives = 237/412 (57%), Gaps = 4/412 (0%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPDHLTYPFLAKASGRLAKRELAVAVHAQI 89
WN ++ GYS+ + + LF ML + V P+ LT + +A + + VH +
Sbjct: 177 WNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFV 236
Query: 90 AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
++ + D+ + N++I +Y CG + YARE+F+ MP K +++ SM+ GY G +N A
Sbjct: 237 NESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAM 296
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
+F + +W+A+I G V+ + A+ IF M+ G + N VTL S+L +H
Sbjct: 297 DLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFS 356
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
L G+ + Y I + + T++ID YAKCG + A +VF ++ ++ W ++
Sbjct: 357 TLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRS--LIAWTSI 414
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS-LGKRG 328
I A+HG +L LF EM GI PD++TF +L+ACAH G + EAW F L + G
Sbjct: 415 ISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYG 474
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
+ P EHYACMV LSRAG++++A EFI +MPLEPTA + G+LL G G ++L + V
Sbjct: 475 IQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVF 534
Query: 389 KKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+L E++P++ G YV ++N+Y+ RW +A T R+ M+ +KK PG S++E
Sbjct: 535 DRLFEIEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIE 586
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 159/348 (45%), Gaps = 42/348 (12%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-- 58
++SF + S G+I + V + IF WN + Y+ + LF ++ +
Sbjct: 44 LISFYSKS--GSIRDAYNVFGKIPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNST 101
Query: 59 -VSPDHLTYPFLAKASGRL-AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
V PD T KA L + LA VH+ I + G E D+F+ N+LI Y C ++V
Sbjct: 102 DVKPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVL 161
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
AR +FD MP + +VSWN+ML GY++ G +++F +M
Sbjct: 162 ARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVM--------------------- 200
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
+ V K N +T VSVL ACA L G + R++ + + + + L ++
Sbjct: 201 ---------LSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAV 251
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
I +YAKCG + A +F E + D + + +MI G +HGFV ++++LF E + P
Sbjct: 252 IGLYAKCGILDYARELFE--EMPEKDGITYCSMISGYMVHGFVNQAMDLFREQE----RP 305
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS 344
T+ ++S A F+++ G P + A ++ S
Sbjct: 306 RLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFS 353
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 117/271 (43%), Gaps = 33/271 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + + PR+ WN VI G ++ ++ +F M G P+ +T +
Sbjct: 290 GFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASIL 349
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ + +H + Y+ +++++ ++I Y CG + A+ VFD + + +
Sbjct: 350 PVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLI 409
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W S++ YA G+ N+ AL +F EM G
Sbjct: 410 AWTSIISAYAVHGDANV-------------------------------ALSLFYEMLTNG 438
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ ++VT SVL ACAH G LD+ + ++ + G+ + ++ + ++ G + +A
Sbjct: 439 IQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDA 498
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+ F + +W A++ G ++ G V+
Sbjct: 499 -VEFISKMPLEPTAKVWGALLNGASVAGDVE 528
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 130/284 (45%), Gaps = 9/284 (3%)
Query: 106 HMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSA 165
H++ G ++AR V + + + ++ Y+K G + A VF +P +N+ SW+A
Sbjct: 16 HLFFRVGKQLHARLVLSSVVPDNFLG-SKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNA 74
Query: 166 LIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR----YM 221
L Y + + L +F + + S + +V C+ L +L + + ++
Sbjct: 75 LFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKEVHSFI 134
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
+ +GL + + +LI Y++C + A I+F + + D + WNAM+ G + G +E
Sbjct: 135 LRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMP--ERDTVSWNAMLAGYSQGGSYEE 192
Query: 282 SLELFTEM-QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMV 340
ELF M V + P+ +T + +L ACA + + + + + + ++
Sbjct: 193 CKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVI 252
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
++ G + A E +MP E S+++G M HG ++ A
Sbjct: 253 GLYAKCGILDYARELFEEMP-EKDGITYCSMISGYMVHGFVNQA 295
>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
Length = 987
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/440 (33%), Positives = 249/440 (56%), Gaps = 5/440 (1%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDH 63
S ++ G ++ + + ++ I WNT+I GY+++ ++ F +ML A + PD
Sbjct: 421 SLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDA 480
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD- 122
T + A L ++ +H+ I +TG I N+LI Y G + AR + D
Sbjct: 481 FTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQ 540
Query: 123 GMPTKMSV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
+ ++V S+ ++L+GY K G+ AR++F++M R+V++W+A+I GY + G EA+
Sbjct: 541 AVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAME 600
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+F M +G + N TL +VL ACA L LD G+ + I ++ + ++I +YA
Sbjct: 601 LFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYA 660
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
+ G++ A VF + + + + W +MI +A HG ++++ LF EM VG+ PD IT+
Sbjct: 661 RSGSVPLARRVFDQI-CWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITY 719
Query: 302 LGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
+G+LSACAH G V + +++ + + G+VP+ HYACMVD +RAG +TEA+EFI +MP
Sbjct: 720 VGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMP 779
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
+ P + GSLL C DLAE+ KL+ + P + G Y L+NVY+ RW++A
Sbjct: 780 VAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAAR 839
Query: 421 TREAMETRGVKKYPGWSFVE 440
+ + +GVKK G+S+
Sbjct: 840 IWKLRKDKGVKKETGFSWTH 859
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/447 (26%), Positives = 203/447 (45%), Gaps = 43/447 (9%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
V + + + W +I G ++S ++ F+ M+ G +P T + + +
Sbjct: 303 VFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEA 362
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
+ VH + K G S + ++NS+++MYG CGD AR VF+ M + SWN M+
Sbjct: 363 CGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSL 422
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS-KANEVT 197
Y G M +A +FE M ER++VSW+ +I GY + G AL F M S + + T
Sbjct: 423 YTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFT 482
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA-------- 249
+ SVL ACA+L L G+ M Y++ G+ + + +LI YAK G+++ A
Sbjct: 483 VTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAV 542
Query: 250 -----LIVFHGVEK------------------HQSDVLIWNAMIGGLAMHGFVKESLELF 286
+I F + + + DV+ W AMI G +G E++ELF
Sbjct: 543 VADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELF 602
Query: 287 TEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDAL--- 343
M ++G P+ T +LSACA + + K + + + E + +A+
Sbjct: 603 RSMILIGPEPNSHTLAAVLSACAS----LAYLDYGKQIHCKAIRSLQEQSVSVSNAIITV 658
Query: 344 -SRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPDHDG 400
+R+G V A Q+ S++ HG + A ++ +++V ++PDH
Sbjct: 659 YARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHI- 717
Query: 401 RYVGLSNVYAIFKRWDEARTTREAMET 427
YVG+ + A D+ + E M+
Sbjct: 718 TYVGVLSACAHAGFVDKGKRYYEQMQN 744
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 144/311 (46%), Gaps = 36/311 (11%)
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGD----IVYAREVFDGMP--TKMSVSWNSMLD 137
A+HA K G ++ N+L+ Y S G AR +FD +P + + +WNS+L
Sbjct: 230 AIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWNSLLS 289
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
YAK G + A VF MP+R+ VSW+ +I G + G + +A+ F +M G ++ T
Sbjct: 290 LYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFT 349
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
L +VL +CA + A GR + +++ GLS +P+ S++ MY KCG + A VF ++
Sbjct: 350 LTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQ 409
Query: 258 --------------KHQS---------------DVLIWNAMIGGLAMHGFVKESLELFTE 288
HQ ++ WN +I G +G +L+ F+
Sbjct: 410 VRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSR 469
Query: 289 M-QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347
M + PD T +LSACA+ ++ + + GM S+ ++ +++G
Sbjct: 470 MLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSG 529
Query: 348 QVTEAYEFICQ 358
V A + Q
Sbjct: 530 SVETARRIMDQ 540
>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
Length = 596
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 145/435 (33%), Positives = 254/435 (58%), Gaps = 12/435 (2%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S LG+++ + KV L+ + WN+++ G+ KS N ++ +F ++ + D +++
Sbjct: 170 SKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQISK----KDVISWN 225
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ ++ + A + Q+ + Y S N+LI Y +CGDI A FD MP +
Sbjct: 226 SMISGYAKIGDMDRACVLFQQMPEKNYSS----WNALISGYVNCGDIKSAWRFFDAMPER 281
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
SVSW +M+ GY+KCG+++ A ++F+ + ++++++++A+I + + ++AL +F EM
Sbjct: 282 NSVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMISCFAQNSQPRKALWLFSEML 341
Query: 188 DVGS--KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
+ + +++TL SV+ AC+ LG L + Y+ D G + L T+L+D+YAKCG+
Sbjct: 342 KAYANIQPDQMTLASVVSACSQLGDLRFASWIESYVNDLGTEIDDQLVTALLDLYAKCGS 401
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
+ +A +FHG+ K DV+ ++AMI G ++G V ++++LF M I P+ TF GLL
Sbjct: 402 VDKAYELFHGLNK--KDVVAYSAMISGCGINGKVADAIKLFDMMVDAQIHPNLATFTGLL 459
Query: 306 SACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
+AC H GLV E + FF S+ G+VP ++HYA MVD L RAG++ +AYE I MP++P +
Sbjct: 460 TACNHAGLVKEGYRFFSSMKDHGLVPSTDHYAIMVDLLGRAGRLQDAYELIKSMPMQPHS 519
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
+ G+LL C H ++L EI + L+ + Y L+N+Y+ RWD+ R+
Sbjct: 520 GVWGALLLACNVHNNVELGEIAAQHCFNLETNATAYYSLLANIYSSAGRWDDVGRLRKLW 579
Query: 426 ETRGVKKYPGWSFVE 440
+ + + K G S+ E
Sbjct: 580 KEKKLAKLSGCSWTE 594
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 198/383 (51%), Gaps = 13/383 (3%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y +L HL +P F W IR +S+ +++ L+V+M R G+ P +A
Sbjct: 76 YVHSILYHLPHPDSFSWGWAIRYFSQQGQFKEALYLYVQMQRQGLCPSTFAVSSALRAYA 135
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
R + +++HA+ K G+ + +++ +L+ +Y GD+ A++VFD + K VSWNS
Sbjct: 136 RTTYKMGGMSIHAESYKYGFSNCVYVQTALVDLYSKLGDMNTAQKVFDELAEKNVVSWNS 195
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
+L G+ K G + A++VF+ + +++V+SW+++I GY K GD A V+F++M + N
Sbjct: 196 ILSGHLKSGNLLEAQRVFDQISKKDVISWNSMISGYAKIGDMDRACVLFQQM----PEKN 251
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
+ +++ + G + M ++ S++ ++I Y+KCG + A +F
Sbjct: 252 YSSWNALISGYVNCGDIKSAWRFFDAMPERN-SVSW---ITMIAGYSKCGDVDSASKLFD 307
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM--QIVGITPDEITFLGLLSACAHGG 312
+ K D+L +NAMI A + +++L LF+EM I PD++T ++SAC+ G
Sbjct: 308 QIAK--KDLLTFNAMISCFAQNSQPRKALWLFSEMLKAYANIQPDQMTLASVVSACSQLG 365
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
+ A + + G + ++D ++ G V +AYE + + + +++
Sbjct: 366 DLRFASWIESYVNDLGTEIDDQLVTALLDLYAKCGSVDKAYELFHGLNKKDVVA-YSAMI 424
Query: 373 TGCMNHGKLDLAEIVGKKLVELQ 395
+GC +GK+ A + +V+ Q
Sbjct: 425 SGCGINGKVADAIKLFDMMVDAQ 447
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 131/321 (40%), Gaps = 58/321 (18%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S + +G++D +C + + WN +I GY + + F M P+
Sbjct: 229 SGYAKIGDMDRACVLFQQMPEKNYSSWNALISGYVNCGDIKSAWRFFDAM------PERN 282
Query: 65 TYPFLAKASG--RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
+ ++ +G + + A + QIAK DL N++I + A +F
Sbjct: 283 SVSWITMIAGYSKCGDVDSASKLFDQIAK----KDLLTFNAMISCFAQNSQPRKALWLFS 338
Query: 123 GM--------PTKMSV----------------SW-----------------NSMLDGYAK 141
M P +M++ SW ++LD YAK
Sbjct: 339 EMLKAYANIQPDQMTLASVVSACSQLGDLRFASWIESYVNDLGTEIDDQLVTALLDLYAK 398
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
CG ++ A ++F + +++VV++SA+I G G +A+ +F+ M D N T +
Sbjct: 399 CGSVDKAYELFHGLNKKDVVAYSAMISGCGINGKVADAIKLFDMMVDAQIHPNLATFTGL 458
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA--LIVFHGVEKH 259
L AC H G + +G M D GL + ++D+ + G +++A LI ++ H
Sbjct: 459 LTACNHAGLVKEGYRFFSSMKDHGLVPSTDHYAIMVDLLGRAGRLQDAYELIKSMPMQPH 518
Query: 260 QSDVLIWNAMIGGLAMHGFVK 280
+W A++ +H V+
Sbjct: 519 SG---VWGALLLACNVHNNVE 536
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/426 (34%), Positives = 238/426 (55%), Gaps = 36/426 (8%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
KVL + + W +I YS++ + ++++S+F +M+R+ P+ T+ + + R +
Sbjct: 107 KVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRAS 166
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
L +H I K Y+S +F+ +SL LD
Sbjct: 167 GLALGKQIHGLIVKWNYDSHIFVGSSL-------------------------------LD 195
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
YAK G++ AR++FE +PER+VVS +A+I GY + G +EAL +F+ ++ G + N VT
Sbjct: 196 MYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVT 255
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
S+L A + L LD G+ +++ + L LQ SLIDMY+KCG + A +F +
Sbjct: 256 YASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMP 315
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACAHGGLVME 316
+ + + WNAM+ G + HG +E LELF M+ + PD +T L +LS C+HG +
Sbjct: 316 ERTA--ISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDT 373
Query: 317 AWYFFKSL--GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
+ + G+ G+ P +EHY C+VD L RAG++ EA+EFI +MP +PTA +LGSLL
Sbjct: 374 GLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGA 433
Query: 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
C H +D+ E VG +L+E++P++ G YV LSN+YA RW++ R M + V K P
Sbjct: 434 CRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEP 493
Query: 435 GWSFVE 440
G S+++
Sbjct: 494 GRSWIQ 499
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 132/256 (51%), Gaps = 10/256 (3%)
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
Y KC + AR+V + MPE+NVVSW+A+I Y + G EAL +F EM K NE T
Sbjct: 96 YGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTF 155
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
+VL +C L G+ + ++ + + +SL+DMYAK G I+EA +F +
Sbjct: 156 ATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLP- 214
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
+ DV+ A+I G A G +E+LE+F +Q G+ P+ +T+ LL+A + L+
Sbjct: 215 -ERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGK 273
Query: 319 YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNH 378
+ +R + + ++D S+ G ++ A MP E TA ++L G H
Sbjct: 274 QAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMP-ERTAISWNAMLVGYSKH 332
Query: 379 GKLDLAEIVGKKLVEL 394
G +G++++EL
Sbjct: 333 G-------LGREVLEL 341
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 34/243 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + ++ L + +I GY++ +++ +F ++ G+ P+++TY L
Sbjct: 201 GQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLL 260
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A LA + H + + + NSLI MY CG++ YA+ +FD MP + ++
Sbjct: 261 TALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAI 320
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+ML GY+K G + R+V EL F MRD
Sbjct: 321 SWNAMLVGYSKHG---LGREVLEL----------------------------FRLMRDEK 349
Query: 191 S-KANEVTLVSVLCACAHLGALDQGRMMLRYMI--DKGLSLTLPLQTSLIDMYAKCGAIK 247
K + VTL++VL C+H D G + M+ + G+ ++DM + G I
Sbjct: 350 RVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRID 409
Query: 248 EAL 250
EA
Sbjct: 410 EAF 412
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 23/196 (11%)
Query: 174 GDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
G +EAL+ EM +G + ++L AC AL +G+ + +MI L+
Sbjct: 33 GRLQEALL---EMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLR 89
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
T L+ Y KC +++A V E + +V+ W AMI + G E+L +F EM
Sbjct: 90 TRLLIFYGKCDCLEDARKVLD--EMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSD 147
Query: 294 ITPDEITFLGLLSACAHG-GLVMEAWYFFKSLGKR--GMVPK---SEHY---ACMVDALS 344
P+E TF +L++C GL +LGK+ G++ K H + ++D +
Sbjct: 148 GKPNEFTFATVLTSCIRASGL---------ALGKQIHGLIVKWNYDSHIFVGSSLLDMYA 198
Query: 345 RAGQVTEAYEFICQMP 360
+AGQ+ EA E +P
Sbjct: 199 KAGQIEEAREIFECLP 214
>gi|225435933|ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14170-like [Vitis vinifera]
Length = 455
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/432 (34%), Positives = 240/432 (55%), Gaps = 34/432 (7%)
Query: 8 SYLGNID-YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
S LG + +S V H+ + I+ WN +I +S+S P+KSI LF++M PD T
Sbjct: 54 SQLGKLSPHSLSVFLHMPHRNIYSWNIIIGEFSRSHLPHKSIDLFLQMRHFNQPPDVFTL 113
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
P + +A +L V+VH + G E LF++++L+ MY + G ++ AR +FD
Sbjct: 114 PLVLRACAASGSVKLGVSVHGLCVEMGMEKSLFVASALVFMYVTFGKVLDARVLFDE--- 170
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
MPER+ V W+A++ GY + + AL +F +M
Sbjct: 171 ----------------------------MPERDAVLWTAMLAGYAQHEEPMLALSVFRQM 202
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
G + V ++S+L AC LG L G+ + ++ + L+L L L +L+ Y KC A+
Sbjct: 203 VSAGVALDGVVMISLLLACGQLGWLKHGKSVHGWITRRCLALGLNLGNALVYFYVKCAAL 262
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ +F + + DV+ W+++I G + G V +L+LF M++ G+ P+++TFLG LS
Sbjct: 263 GYSYNLFDKMP--ERDVISWSSIILGYGLSGNVDIALDLFDRMRVAGVKPNDVTFLGALS 320
Query: 307 ACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
AC H G+V A +F+ + + G+ P+ +HYACMVD L RAG + +A FI +MP+E +
Sbjct: 321 ACTHTGMVERAHTYFEMMKEYGVAPELKHYACMVDCLGRAGMLEDAERFIEEMPVEADGA 380
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+LG+LL GC HG ++ E V KKL+ L+P+ YV L+N+YA R+++A R+ M+
Sbjct: 381 VLGALLGGCRVHGNAEVGERVAKKLMGLEPEKASNYVMLANIYAGAGRFEDAEKVRQLMK 440
Query: 427 TRGVKKYPGWSF 438
R + K PG SF
Sbjct: 441 QRKLSKVPGCSF 452
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/431 (33%), Positives = 229/431 (53%), Gaps = 4/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + ++ + W +I GY+++ +++ L + R G+ P +
Sbjct: 366 GMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSF 425
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + E VH+ K G + + ++ N+LI MYG C ++ Y R+VF+ M K +V
Sbjct: 426 LACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTV 485
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS + + + AR +F+ M R+VVSW+ +I Y + EA+ F+ M
Sbjct: 486 SWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEH 545
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K N L +L C LG+ G+ + I G+ L + +L+ MY KCG ++
Sbjct: 546 EKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGC-ADSH 604
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF +E + D+ WN I G A HG +E+++++ M+ VG+ P+E+TF+GLL+AC+H
Sbjct: 605 KVFDSME--ERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSH 662
Query: 311 GGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E W FFKS+ + G+ P EHYACMVD L R G V A +FI MP+EP +
Sbjct: 663 AGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWS 722
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL C H ++ +KL +P + G YV LSN+Y+ W E R+ M+ RG
Sbjct: 723 ALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRG 782
Query: 430 VKKYPGWSFVE 440
V K PG S+++
Sbjct: 783 VSKEPGCSWMQ 793
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 22/380 (5%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
L+ LG + + +V + + I WN++I Y S + LF + V T
Sbjct: 43 LARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR----TA 98
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
L RL + A V + E + N+++ Y GDI AR +FD MP+
Sbjct: 99 TILLSGYARLGRVLDARRVFDGMP----ERNTVAWNAMVSCYVQNGDITMARRLFDAMPS 154
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ SWNSM+ GY +M A +F+ MP+RN+V+W+ +I GYV+ + + IF M
Sbjct: 155 RDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMM 214
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK-CGA 245
G+ ++ SVL A L L ++ ++ G + + TS++++Y + A
Sbjct: 215 HHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASA 274
Query: 246 IKEALIVFHG-VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+ A+ F G VE+++ W+ MI L+ G + ++ ++ + I P + L
Sbjct: 275 LDIAIKFFDGMVERNE---YTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALLTG 330
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT 364
L+ C G + EA F+ + P + M+ + G V EA E +MP T
Sbjct: 331 LARC---GRITEARILFEQIPD----PIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNT 383
Query: 365 ASMLGSLLTGCMNHGKLDLA 384
S G ++ G +G+ + A
Sbjct: 384 ISWAG-MIAGYAQNGRSEEA 402
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 142/287 (49%), Gaps = 10/287 (3%)
Query: 47 SISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIH 106
++ + +K V + T+ + A + + A+AV+ + S +L+
Sbjct: 274 ALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPS----QTALLT 329
Query: 107 MYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSAL 166
CG I AR +F+ +P + VSWN+M+ GY + G ++ A+++F+ MP RN +SW+ +
Sbjct: 330 GLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGM 389
Query: 167 IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL 226
I GY + G +EAL + + + G + +L S AC+H+GAL+ GR + + G
Sbjct: 390 IAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGC 449
Query: 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELF 286
+ +LI MY KC ++ VF+ + D + WN+ I L + ++++ +F
Sbjct: 450 QFNSYVCNALISMYGKCRNMEYVRQVFNRMRV--KDTVSWNSFIAALVQNNMLEDARHIF 507
Query: 287 TEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS 333
M ++ D +++ ++SA A EA FFK++ P S
Sbjct: 508 DNM----LSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNS 550
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 148/414 (35%), Positives = 236/414 (57%), Gaps = 11/414 (2%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ WNT+I GY++S +++ LF + SP + + A SG + R + A
Sbjct: 250 VVSWNTIITGYAQSGKIDEARQLFDE------SPVQDVFTWTAMVSGYIQNRMVEEA--R 301
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
++ E + N+++ Y + A+E+FD MP + +WN+M+ GYA+CG+++
Sbjct: 302 ELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISE 361
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
A+ +F+ MP+R+ VSW+A+I GY + G EAL +F +M G + N + S L CA
Sbjct: 362 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCAD 421
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
+ AL+ G+ + ++ G + +L+ MY KCG+I+EA +F E D++ WN
Sbjct: 422 VVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFK--EMAGKDIVSWN 479
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA-WYFFKSLGK 326
MI G + HGF + +L F M+ G+ PD+ T + +LSAC+H GLV + YF+
Sbjct: 480 TMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQD 539
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
G++P S+HYACMVD L RAG + +A+ + MP EP A++ G+LL HG +LAE
Sbjct: 540 YGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAET 599
Query: 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
K+ ++P++ G YV LSN+YA RW + R M +GVKK PG+S++E
Sbjct: 600 AADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 653
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 186/409 (45%), Gaps = 58/409 (14%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFLAKASGRL 76
K L + I WN I Y ++ N+++ +F +M R + VS + + +L R
Sbjct: 54 KPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYL-----RN 108
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
+ ELA + ++ E DL N +I Y ++ ARE+F+ MP + SWN+ML
Sbjct: 109 GEFELARKLFDEMP----ERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTML 164
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
GYA+ G ++ AR VF+ MPE+N VSW+AL+ YV+ +EA ++F+ S+ N
Sbjct: 165 SGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFK------SREN-W 217
Query: 197 TLVSVLCACAHLGALDQGRMML--RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
LVS C LG + + ++ R D + ++I YA+ G I EA +F
Sbjct: 218 ALVSWNCL---LGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFD 274
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM------------------------- 289
E DV W AM+ G + V+E+ ELF +M
Sbjct: 275 --ESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAK 332
Query: 290 QIVGITP--DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347
++ + P + T+ +++ A G + EA F + KR V +A M+ S++G
Sbjct: 333 ELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVS----WAAMIAGYSQSG 388
Query: 348 QVTEAYEFICQMPLEP---TASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
EA QM E S S L+ C + L+L + + +LV+
Sbjct: 389 HSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVK 437
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 139/295 (47%), Gaps = 19/295 (6%)
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV 161
N +I Y G+ AR++FD MP + VSWN M+ GY + + AR++FE+MPER+V
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
SW+ ++ GY + G +A +F+ M + N+V+ ++L A +++ M+ +
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRM----PEKNDVSWNALLSAYVQNSKMEEACMLFKSR 214
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
+ L L+ + K I EA F + + DV+ WN +I G A G + E
Sbjct: 215 EN----WALVSWNCLLGGFVKKKKIVEARQFFDSM--NVRDVVSWNTIITGYAQSGKIDE 268
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
+ +LF E + D T+ ++S +V EA F + +R V + M+
Sbjct: 269 ARQLFDESPV----QDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVS----WNAMLA 320
Query: 342 ALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQP 396
+ ++ A E MP S +++TG GK+ A+ + K+ + P
Sbjct: 321 GYVQGERMEMAKELFDVMPCR-NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP 374
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 15/192 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I+ + + ++ I WNT+I GYS+ ++ F M R G+ PD T +
Sbjct: 458 GSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVL 517
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNS-----LIHMYGSCGDIVYAREVFDGMP 125
A V Q T + + NS ++ + G G + A + MP
Sbjct: 518 SACSHTG----LVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMP 573
Query: 126 TKMSVS-WNSMLDGYAKCGEMNMAR----QVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
+ + W ++L G +A ++F + PE N + L + Y G + +
Sbjct: 574 FEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPE-NSGMYVLLSNLYASSGRWGDVG 632
Query: 181 VIFEEMRDVGSK 192
+ MRD G K
Sbjct: 633 KLRVRMRDKGVK 644
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 155/412 (37%), Positives = 236/412 (57%), Gaps = 6/412 (1%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W T++ + + ++++ +FV+M R GV PD +T L RL + H +
Sbjct: 86 WTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMV 145
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G N+++ MY G + AR VF M + VSW +LDG + + R
Sbjct: 146 KMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRV 205
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDVGSKANEVTLVSVLCACAHLG 209
VF+ MPERN V+W+ +I GY+ G +E+ + EM D+ + N VTL S+L AC+ G
Sbjct: 206 VFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSG 265
Query: 210 ALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
L GR + Y + K L + + T+++DMYAKCG I A F + Q +V+ WNA
Sbjct: 266 DLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMP--QRNVVSWNA 323
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-R 327
M+ GLAMHG + +L++F +M PD++TF +LSAC+H GLV + ++F +L
Sbjct: 324 MLSGLAMHGLGRAALDIFPQM-FKEAKPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVY 382
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
G+ PK EHYACMVD L RAG++ EA + +MP+ P +LGSLL C HGKL L E +
Sbjct: 383 GITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHL 442
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
++LV+L P + ++ LSN+YA+ + + A + R+ ++ RG+KK PG S +
Sbjct: 443 LQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSI 494
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 155/366 (42%), Gaps = 64/366 (17%)
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
Y FL ++ R + ++ +HA I TG I A E F
Sbjct: 16 YRFLLRSCARESSLDIGERLHATIITTG--------------------IAGAPETF---- 51
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPE--RNVVSWSALIDGYVKCGDYKEALVIF 183
N++L YA CG AR+VF+ +P ++ V W+ L+ +V+ EAL+IF
Sbjct: 52 -----LHNALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIF 106
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
EMR G K +EVTLV + CA LG + G M+ GL +++DMYAK
Sbjct: 107 VEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKS 166
Query: 244 GAIKEALIVFH---------------GV--------------EKHQSDVLIWNAMIGGLA 274
G + EA VF+ GV E + + + W MI G
Sbjct: 167 GLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYL 226
Query: 275 MHGFVKESLELFTEMQI-VGITPDEITFLGLLSACAHGG-LVMEAWYFFKSLGKRGMVPK 332
G +ES L EM + + + +T +L+AC+ G L+M W +L +
Sbjct: 227 DSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELN 286
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA-EIVGKKL 391
MVD ++ G++ A++F +MP S ++L+G HG A +I +
Sbjct: 287 IMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVS-WNAMLSGLAMHGLGRAALDIFPQMF 345
Query: 392 VELQPD 397
E +PD
Sbjct: 346 KEAKPD 351
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 230/431 (53%), Gaps = 10/431 (2%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V + + WN++I Y ++ +++ LFV+M+ G PD +T + A LA
Sbjct: 207 RVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLA 266
Query: 78 KRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
VHA + K D+ ++N+L+ MY CG AR +FD MP++ VS S+L
Sbjct: 267 AEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSIL 326
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
GYAK + A+ VF M E+NV++W+ LI Y + G+ +EA+ +F +++
Sbjct: 327 AGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHY 386
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT------SLIDMYAKCGAIKEAL 250
T +VL AC ++ L G+ +++ +G ++ SL+DMY K G+I +
Sbjct: 387 TYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGA 446
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + D + WNAMI G A +G K++L LF M PD +T +G+LSAC H
Sbjct: 447 KVFERMAAR--DNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGH 504
Query: 311 GGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E F + + G+ P +HY CMVD L RAG + EA E I MP EP + +
Sbjct: 505 SGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWA 564
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL C H ++L E +L EL P++ G YV LSN+YA +W + R +M+ RG
Sbjct: 565 SLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRG 624
Query: 430 VKKYPGWSFVE 440
V K PG S++E
Sbjct: 625 VSKQPGCSWIE 635
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 151/319 (47%), Gaps = 14/319 (4%)
Query: 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
A A H + K+ + F+ N+L+ Y G + AR VFDG+P + + S+N++L YA+
Sbjct: 36 ARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYAR 95
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKC--GDYKEALVIFEEMRDVGSKANEVTLV 199
G + AR +FE +P+ + S++A++ + G +AL M N +
Sbjct: 96 LGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFA 155
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
S L ACA L G + + + + + T+L+DMYAKC +A VF +
Sbjct: 156 SALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMP-- 213
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
+ +V+ WN++I +G V E+L LF EM G PDE+T ++SACA E
Sbjct: 214 ERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQ 273
Query: 320 FFKSLGKR-----GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
+ KR MV + +VD ++ G+ EA MP S S+L G
Sbjct: 274 VHAHMVKRDRLRDDMVLNN----ALVDMYAKCGRTWEARCIFDSMPSRSVVSET-SILAG 328
Query: 375 CMNHGKLDLAEIVGKKLVE 393
++ A++V ++VE
Sbjct: 329 YAKSANVEDAQVVFSQMVE 347
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 162/346 (46%), Gaps = 48/346 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S + LG + + +V + F +N ++ Y++ P+++ +LF A PD
Sbjct: 60 STYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALF----EAIPDPDQC 115
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISN--SLIHMYGSCG---DIVYARE 119
+Y + A R + A+ A +D F+ N S +C D+ +
Sbjct: 116 SYNAVVAALARHGRGHAGDALRFLAA---MHADDFVLNAYSFASALSACAAEKDLRTGEQ 172
Query: 120 VFDGMPTKMSVSWN-----SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG 174
V G+ + + + +++D YAKC AR+VF+ MPERNVVSW++LI Y + G
Sbjct: 173 VH-GLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNG 231
Query: 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG-LSLTLPLQ 233
EALV+F EM G +EVTL SV+ ACA L A +GR + +M+ + L + L
Sbjct: 232 PVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLN 291
Query: 234 TSLIDMYAKCGAIKEALIVFH---------------------GVEKHQ--------SDVL 264
+L+DMYAKCG EA +F VE Q +V+
Sbjct: 292 NALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVI 351
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
WN +I A +G +E++ LF +++ I P T+ +L+AC +
Sbjct: 352 AWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGN 397
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 132/277 (47%), Gaps = 39/277 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
N++ + V S + + WN +I Y+++ ++I LFV++ R + P H TY +
Sbjct: 333 ANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVL 392
Query: 71 KASGRLAKRELAVAVHAQIAKTGY------ESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
A G +A +L H + K G+ ESD+F+ NSL+ MY G I +VF+ M
Sbjct: 393 NACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERM 452
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ +VSWN+M+ GYA+ G K+AL +FE
Sbjct: 453 AARDNVSWNAMIVGYAQNGRA-------------------------------KDALHLFE 481
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKC 243
M + VT++ VL AC H G +D+GR +M D G++ + T ++D+ +
Sbjct: 482 RMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRA 541
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G +KEA + + + D ++W +++G +H V+
Sbjct: 542 GHLKEAEELIKDMPT-EPDSVLWASLLGACRLHKNVE 577
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 9/187 (4%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+ID KV ++ WN +I GY+++ ++ LF +ML + +PD +T +
Sbjct: 440 GSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVL 499
Query: 71 KASGRLA-KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM- 128
A G E H G ++ + G G + A E+ MPT+
Sbjct: 500 SACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPD 559
Query: 129 SVSWNSMLDG-----YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
SV W S+L + GE R +FEL PE N + L + Y + G + + +
Sbjct: 560 SVLWASLLGACRLHKNVELGERTAGR-LFELDPE-NSGPYVLLSNMYAEMGKWADVFRVR 617
Query: 184 EEMRDVG 190
M+D G
Sbjct: 618 RSMKDRG 624
>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 158/433 (36%), Positives = 243/433 (56%), Gaps = 6/433 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + ++ + W+ +I YS+S +++ LF KM++ G P+ +
Sbjct: 264 GDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTL 323
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L + +H + K G + D+FI +SLI +Y CG R VFD + K V
Sbjct: 324 SALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVV 383
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
WNSM+ GY+ G + ++FEL+PE+N VSW +I GY++ ++ L +F + G
Sbjct: 384 CWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSG 443
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
N+ T SVLCACA + +LD+G + +I G+ + + T+L DMYAKCG I +
Sbjct: 444 QTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSK 503
Query: 251 IVFHGV-EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSAC 308
VF + EK++ + W MI GLA GF ESL LF EM+ + P+E+ L +L AC
Sbjct: 504 QVFERMPEKNE---ISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFAC 560
Query: 309 AHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
+H GLV + ++F S+ K G+ PK +HY C+VD LSR+G++ EA EFI +P +P A+
Sbjct: 561 SHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANA 620
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
+LL+GC + +AE KKL +L ++ YV LSN+YA RW + R+ M
Sbjct: 621 WAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMRE 680
Query: 428 RGVKKYPGWSFVE 440
+G+KK G S+VE
Sbjct: 681 KGLKKSGGCSWVE 693
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 165/318 (51%), Gaps = 35/318 (11%)
Query: 25 NP--RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82
NP + W I G+ ++ +++ LF ++L +GV P+ +T+ + +A G L L
Sbjct: 144 NPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLG 203
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+++ + K G+E L +SNSLI + G+I AR VFD M + VSW ++LD Y +
Sbjct: 204 MSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVET 263
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
G++ AR++F+ MPERN +SWSA+I Y + G +EAL +F +M G K N L
Sbjct: 264 GDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTL 323
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
A A L AL G + ++ G+ + + +SLID+Y KCG + +VF + + +
Sbjct: 324 SALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLI--LEKN 381
Query: 263 VLIWNAMIGGLAMHGF-------------------------------VKESLELFTEMQI 291
V+ WN+M+GG +++G ++ LE+F + +
Sbjct: 382 VVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLV 441
Query: 292 VGITPDEITFLGLLSACA 309
G TP++ TF +L ACA
Sbjct: 442 SGQTPNKSTFSSVLCACA 459
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 134/257 (52%), Gaps = 6/257 (2%)
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
QI K SDL +SN +I Y G++V AR +FD MP + VSW++++ G K G +
Sbjct: 77 QIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEE 136
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
+ FE P +NVVSW+A I G+V+ G EAL +F + + G + N+VT SV+ AC
Sbjct: 137 SMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGE 196
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
LG G +L ++ G L + SLI + + G I A VF +EK DV+ W
Sbjct: 197 LGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKR--DVVSWT 254
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327
A++ G ++E+ +F EM +EI++ +++ + G EA F + +
Sbjct: 255 AILDAYVETGDLREARRIFDEMP----ERNEISWSAMIARYSQSGYAEEALKLFSKMVQE 310
Query: 328 GMVPKSEHYACMVDALS 344
G P +AC + AL+
Sbjct: 311 GFKPNISCFACTLSALA 327
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 152/416 (36%), Positives = 230/416 (55%), Gaps = 39/416 (9%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
IF WN +IRGY+ + ++ L+ +M G+ PD+ T+PF+ KA L+ E +H
Sbjct: 141 IFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHE 200
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
+ +TG+E D+F+ +LI MY AKCG +
Sbjct: 201 HVVQTGWEKDVFVGAALIDMY-------------------------------AKCGCVGS 229
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
AR+VF+ + R+ V W++++ Y + G L + EM G + E TLV+ + A A
Sbjct: 230 AREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASAD 289
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH--GVEKHQSDVLI 265
AL QGR + + ++T+L+DMYAKCG+++ A +F GV++ V+
Sbjct: 290 NAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKR----VVS 345
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
WNAMI G AMHG E+L+LF EM V PD ITF+G+LSAC+HGGL+ E W FF+++
Sbjct: 346 WNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMI 404
Query: 326 KRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
+ + P +HY CMVD L +G++ EAY I QM + P + + G+LL C H ++L
Sbjct: 405 RDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELG 464
Query: 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
EI ++L+EL+PD G YV LSN+YA +W+ R+ M R +KK S++E
Sbjct: 465 EIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIE 520
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 131/268 (48%), Gaps = 10/268 (3%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
+++ Y C ++ AR +F+ +P+ N+ W+ LI GY G Y+ A+ ++ +M D G +
Sbjct: 116 LVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPD 175
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
T VL ACA L A++ GR + +++ G + + +LIDMYAKCG + A VF
Sbjct: 176 NFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFD 235
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
+ D ++WN+M+ + +G L L +EM + G+ P E T + +SA A +
Sbjct: 236 KILVR--DAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAAL 293
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
+ ++ + +VD ++ G V A ++ ++ S +++TG
Sbjct: 294 PQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSW-NAMITG 352
Query: 375 CMNHGK----LDLAEIVGKKLVELQPDH 398
HG LDL E + + +PDH
Sbjct: 353 YAMHGHATEALDLFEEMNRV---AKPDH 377
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/430 (34%), Positives = 238/430 (55%), Gaps = 11/430 (2%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
I+ + K+ + + + WNT++ GY++ + ++ LF V+P + + A
Sbjct: 277 QIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF------DVAPIRDVFTWTAI 330
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
SG L A ++ + + N+++ Y + A+E+FD MP + S
Sbjct: 331 VSGYAQNGMLEEA--KRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVAS 388
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
WN+ML GYA+ G ++ AR +F +MP+++ VSW+A++ Y + G +E L +F+EM G
Sbjct: 389 WNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGE 448
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
N VL CA + AL+ G + +I G + + +L+ MY KCG+++EA
Sbjct: 449 WVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHS 508
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
F +E + DV+ WN MI G A HGF KE+LE+F M+ PD+IT +G+L+AC+H
Sbjct: 509 AFEEME--ERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHS 566
Query: 312 GLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GLV + +F S+ + G+ K EHY CM+D L RAG++ EA + MP EP ++M G+
Sbjct: 567 GLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGA 626
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL H +L +K+ EL+P++ G YV LSN+YA +W + R M RGV
Sbjct: 627 LLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGV 686
Query: 431 KKYPGWSFVE 440
KK PG+S++E
Sbjct: 687 KKVPGFSWIE 696
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 116/215 (53%), Gaps = 10/215 (4%)
Query: 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
E D N+L+ Y I A+++F+ MP + VSWN+M+ GYA+ G+M AR++F++
Sbjct: 259 EWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDV 318
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQG 214
P R+V +W+A++ GY + G +EA +F+ M D N V+ +++ A +++
Sbjct: 319 APIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPD----KNAVSWNAMMAAYVQRRMMEEA 374
Query: 215 RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLA 274
+ + M + ++ +++ YA+ G + EA +F + Q D + W AM+ +
Sbjct: 375 KELFDAMPCRNVA----SWNTMLTGYAQAGMLDEARAIFGMMP--QKDAVSWAAMLAAYS 428
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
GF +E+L+LF EM G + F +LS CA
Sbjct: 429 QIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCA 463
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 153/356 (42%), Gaps = 58/356 (16%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK 91
N I + ++ + LF M R S + A A+GRL + A++ I +
Sbjct: 111 NRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYA-ANGRLPQ---ALSFFRSIPR 166
Query: 92 TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQV 151
D F N+L+H G + R +FD MP K SVS+N M+ +A G +++AR
Sbjct: 167 P----DSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHY 222
Query: 152 FELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGAL 211
F+L PE++ VSW+ ++ YV+ G +EA +F D ++ + ++
Sbjct: 223 FDLAPEKDAVSWNGMLAAYVRNGRIQEARELF----DSRTEWDAISW------------- 265
Query: 212 DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIG 271
+L+ Y + I+EA +F+ + Q DV+ WN M+
Sbjct: 266 ----------------------NALMAGYVQRSQIEEAQKMFNKMP--QRDVVSWNTMVS 301
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
G A G + E+ LF V D T+ ++S A G++ EA F ++ + V
Sbjct: 302 GYARRGDMAEARRLFD----VAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAV- 356
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ M+ A + + EA E MP AS ++LTG G LD A +
Sbjct: 357 ---SWNAMMAAYVQRRMMEEAKELFDAMPCRNVAS-WNTMLTGYAQAGMLDEARAI 408
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 120/267 (44%), Gaps = 33/267 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + + + W ++ YS+ +++ LF +M R G + + +
Sbjct: 400 GMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVL 459
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+A E + +H+++ K GY F+ N+L+ MY CG + A F+ M + V
Sbjct: 460 STCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVV 519
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+M+ GYA+ G KEAL +F+ MR
Sbjct: 520 SWNTMIAGYARHGFG-------------------------------KEALEVFDTMRKTS 548
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+K +++TLV VL AC+H G +++G M D G++ T +ID+ + G + EA
Sbjct: 549 TKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEA 608
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMH 276
+ + + + D +W A++G +H
Sbjct: 609 VNLMKDM-PFEPDSTMWGALLGASRIH 634
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 131/317 (41%), Gaps = 34/317 (10%)
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
G P + N + + + G + A ++F MP R+ +++ ++ GY G +AL
Sbjct: 101 GKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSF 160
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS-----LI 237
F + S + TL+ L + L +R + D+ +P++ S +I
Sbjct: 161 FRSIPRPDSFSYN-TLLHALGVSSSLAD-------VRALFDE-----MPVKDSVSYNVMI 207
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
+A G + A F + D + WN M+ +G ++E+ ELF D
Sbjct: 208 SSHANHGLVSLARHYFDLAP--EKDAVSWNGMLAAYVRNGRIQEARELFDSR----TEWD 261
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
I++ L++ + EA F + +R +V + MV +R G + EA
Sbjct: 262 AISWNALMAGYVQRSQIEEAQKMFNKMPQRDVV----SWNTMVSGYARRGDMAEARRLFD 317
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG-RYVGLSNVYAIFKRWD 416
P+ + ++++G +G L+ A K++ + PD + + + Y + +
Sbjct: 318 VAPIRDVFTWT-AIVSGYAQNGMLEEA----KRVFDAMPDKNAVSWNAMMAAYVQRRMME 372
Query: 417 EARTTREAMETRGVKKY 433
EA+ +AM R V +
Sbjct: 373 EAKELFDAMPCRNVASW 389
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 166/504 (32%), Positives = 249/504 (49%), Gaps = 76/504 (15%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ Y+ + + F WN++IRGY+ + +P++++ L++KML G PD+ TYPF+
Sbjct: 72 GHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVL 131
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA G L RE+ VHA + G E D+++ NS++ MY GD+ AR VFD M +
Sbjct: 132 KACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLT 191
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVS---------------------------- 162
SWN+M+ G+ K GE A +VF M V
Sbjct: 192 SWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYV 251
Query: 163 --------------WSALIDGYVKCGDYKEALVIFEEMR--DV----------------- 189
+++ID Y C A +FE +R DV
Sbjct: 252 VRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAF 311
Query: 190 ------------GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
G+ +EVT++SVL AC + AL G + Y++ +G + + + T+LI
Sbjct: 312 QALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALI 371
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
MYA CG++ A VF E + ++ M+ G +HG +E++ +F EM G+TPD
Sbjct: 372 GMYANCGSLVCACRVFD--EMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPD 429
Query: 298 EITFLGLLSACAHGGLVMEA-WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFI 356
E F +LSAC+H GLV E F+K + P+ HY+C+VD L RAG + EAY I
Sbjct: 430 EGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVI 489
Query: 357 CQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWD 416
M L+P + +LL+ C H + LA I +KL EL PD YV LSN+YA +RW+
Sbjct: 490 ENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWE 549
Query: 417 EARTTREAMETRGVKKYPGWSFVE 440
+ R + R ++K P +SFVE
Sbjct: 550 DVENVRALVAKRRLRKPPSYSFVE 573
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/373 (24%), Positives = 153/373 (41%), Gaps = 77/373 (20%)
Query: 82 AVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
A+ +HA + G + +++ L Y CG + YA+ +FD + K S WNSM+ GYA
Sbjct: 41 ALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYA 100
Query: 141 --------------------------------KCGEM---NMARQVFELMP----ERNVV 161
CG++ M R+V L+ E +V
Sbjct: 101 CNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVY 160
Query: 162 SWSALIDGYVKCGDYKEALVIFE-------------------------------EMRDVG 190
++++ Y K GD + A V+F+ +MR G
Sbjct: 161 VGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDG 220
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP---LQTSLIDMYAKCGAIK 247
+ TL+++L AC + L G+ + Y++ G S + L S+IDMY C ++
Sbjct: 221 FVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVS 280
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A +F G+ DV+ WN++I G G ++LELF M +VG PDE+T + +L+A
Sbjct: 281 CARKLFEGLR--VKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAA 338
Query: 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
C + + KRG V ++ + G + A +MP E
Sbjct: 339 CNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMP-EKNLPA 397
Query: 368 LGSLLTGCMNHGK 380
++TG HG+
Sbjct: 398 CTVMVTGFGIHGR 410
>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Glycine max]
Length = 805
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 157/474 (33%), Positives = 250/474 (52%), Gaps = 48/474 (10%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G I+ + V +++ + WN V+ GY++ K++ + M G+ D +T L
Sbjct: 304 VGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSAL 363
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF-------- 121
+ L + HA K +E D+ +S+ +I MY CG + AR VF
Sbjct: 364 LAVAADTRDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDI 423
Query: 122 ----------------------------DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFE 153
+ +P + VSWNS++ G+ K G++ AR +F
Sbjct: 424 VLWNTMLAACAEQGLSGEALKLFFQMQLESVPPNV-VSWNSLIFGFFKNGQVAEARNMFA 482
Query: 154 ------LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
+MP N+++W+ ++ G V+ G A+++F EM+DVG + N +++ S L C
Sbjct: 483 EMCSSGVMP--NLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTS 540
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
+ L GR + Y++ + LS ++ + TS++DMYAKCG++ A VF ++ ++N
Sbjct: 541 MALLKHGRAIHGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVFKMCST--KELYVYN 598
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GK 326
AMI A HG +E+L LF +M+ GI PD IT +LSAC+HGGL+ E FK + +
Sbjct: 599 AMISAYASHGQAREALVLFKQMEKEGIVPDHITLTSVLSACSHGGLMKEGIKVFKYMVSE 658
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
M P EHY C+V L+ GQ+ EA I MP P A +LGSLLT C + ++LA+
Sbjct: 659 LQMKPSEEHYGCLVKLLANDGQLDEALRTILTMPSHPDAHILGSLLTACGQNNDIELADY 718
Query: 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ K L++L PD+ G YV LSNVYA +WD+ R M+ +G++K PG S++E
Sbjct: 719 IAKWLLKLDPDNSGNYVALSNVYAAVGKWDKVSNLRGLMKEKGLRKIPGCSWIE 772
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 111/435 (25%), Positives = 187/435 (42%), Gaps = 81/435 (18%)
Query: 25 NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVA 84
+P +F W +I ++++ +++ ++KM + G+ PD+ P + KA G L
Sbjct: 116 SPNVFSWAAIIGLHTRTGFCEEALFGYIKMQQDGLPPDNFVLPNVLKACGVLKWVRFGKG 175
Query: 85 VHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
VHA + KT G + ++++ SL+ MYG CG + A +VFD M + V+WNSM+ YA+ G
Sbjct: 176 VHAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGKVFDEMSERNDVTWNSMVVTYAQNG 235
Query: 144 EMNMARQVFELMPERNV---------------------------------------VSWS 164
A +VF M + V V S
Sbjct: 236 MNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAVGEGRQGHGLAVVGGLELDNVLGS 295
Query: 165 ALIDGYVKCGDYKEALVIFEE-------------------------------MRDVGSKA 193
++++ Y K G +EA V+F MR+ G +
Sbjct: 296 SIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRF 355
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+ VTL ++L A L G Y + + + + +IDMYAKCG + A VF
Sbjct: 356 DCVTLSALLAVAADTRDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVF 415
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313
V K D+++WN M+ A G E+L+LF +MQ+ + P+ +++ L+ G
Sbjct: 416 SCVRK--KDIVLWNTMLAACAEQGLSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQ 473
Query: 314 VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTASMLGS 370
V EA F + G++P + M+ L + G + A +M + P + + S
Sbjct: 474 VAEARNMFAEMCSSGVMPNLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITS 533
Query: 371 LLTGC-----MNHGK 380
L+GC + HG+
Sbjct: 534 ALSGCTSMALLKHGR 548
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 99/179 (55%), Gaps = 3/179 (1%)
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
YAKCG A ++F P NV SW+A+I + + G +EAL + +M+ G + L
Sbjct: 98 YAKCGASEPATRLFRDSPSPNVFSWAAIIGLHTRTGFCEEALFGYIKMQQDGLPPDNFVL 157
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+VL AC L + G+ + +++ GL + + TSL+DMY KCGA+++A VF E
Sbjct: 158 PNVLKACGVLKWVRFGKGVHAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGKVFD--E 215
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
+ + + WN+M+ A +G +E++ +F EM++ G+ + G +ACA+ V E
Sbjct: 216 MSERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAVGE 274
>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 810
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 152/424 (35%), Positives = 238/424 (56%), Gaps = 34/424 (8%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V + + WN +I G +++ +P K+++L+++M +G+ PD T L AS L
Sbjct: 292 RVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLK 351
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
VH + + G E D FI SL+ +Y CG+ AR +FDGM K SVSWN+M+
Sbjct: 352 SLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMIS 411
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
GY++ G +PE +AL++F ++ G + +++
Sbjct: 412 GYSQNG-----------LPE--------------------DALILFRKLVSDGFQPSDIA 440
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+VSVL AC+ AL G+ Y + L + + S IDMYAK G IKE+ VF G++
Sbjct: 441 VVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLK 500
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
D+ WNA+I +HG +ES+ELF M+ VG PD TF+G+L+ C+H GLV E
Sbjct: 501 --NKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEG 558
Query: 318 WYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
+F + G+ PK EHYAC++D L RAG++ +A + +MP +P + + SLL+ C
Sbjct: 559 LKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCR 618
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436
N G+L++ +IV +KL+EL+P + YV LSN+YA RWD+ R R+ ++ G++K G
Sbjct: 619 NFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGC 678
Query: 437 SFVE 440
S++E
Sbjct: 679 SWIE 682
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 133/266 (50%), Gaps = 37/266 (13%)
Query: 47 SISLFVKMLR-AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLI 105
+I +FVK++ + D+ T+P + KA R L +H + K G D+F+ N+LI
Sbjct: 14 AIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALI 73
Query: 106 HMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSA 165
MYG K G ++ A +VF MP RN+VSW++
Sbjct: 74 AMYG-------------------------------KFGFVDAAVKVFHYMPVRNLVSWNS 102
Query: 166 LIDGYVKCGDYKEALVIFEEMR--DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
+I G+ + G K+ + EM + G + TLV+VL CA + G + +
Sbjct: 103 IISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVK 162
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
GLS + + SL+DMY+KCG + EA ++F + ++ + + WN MIGGL G++ E+
Sbjct: 163 LGLSEDVRVNNSLVDMYSKCGYLTEAQMLFD--KNNRKNAVSWNTMIGGLCTKGYIFEAF 220
Query: 284 ELFTEMQIV-GITPDEITFLGLLSAC 308
LF EMQ+ I +E+T L +L AC
Sbjct: 221 NLFREMQMQEDIEVNEVTVLNILPAC 246
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 140/306 (45%), Gaps = 40/306 (13%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML--RAGVSPDHLTYP 67
G +D + KV ++ + WN++I G+S++ + V+M+ G+ PD T
Sbjct: 79 FGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLV 138
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ R ++ + +H K G D+ ++NSL+ MY CG + A+ +FD K
Sbjct: 139 TVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRK 198
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+VSWN+M+ G GY+ EA +F EM+
Sbjct: 199 NAVSWNTMIGGLC--------------------------TKGYI-----FEAFNLFREMQ 227
Query: 188 ---DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
D+ + NEVT++++L AC + L + + Y I G + + YAKCG
Sbjct: 228 MQEDI--EVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCG 285
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+ A VF+ +E V WNA+IGG A +G +++L L+ +M G+ PD T L
Sbjct: 286 MLICAERVFYSMETKT--VNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSL 343
Query: 305 LSACAH 310
L A AH
Sbjct: 344 LLASAH 349
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 133/281 (47%), Gaps = 34/281 (12%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQI 89
WNT+I G ++ +LF +M ++ + + +T + A +++ +H
Sbjct: 203 WNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYS 262
Query: 90 AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
+ G++ D ++N + YAKCG + A
Sbjct: 263 IRHGFQYDELVANGFVA-------------------------------AYAKCGMLICAE 291
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
+VF M + V SW+ALI G + GD ++AL ++ +M G + T+ S+L A AHL
Sbjct: 292 RVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLK 351
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
+L G+ + +++ GL + + SL+ +Y CG A ++F G+E+ S + WNAM
Sbjct: 352 SLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSS--VSWNAM 409
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
I G + +G +++L LF ++ G P +I + +L AC+
Sbjct: 410 ISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQ 450
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 9/182 (4%)
Query: 176 YKEALVIFEEM-RDVGSKANEVTLVSVLCACAHLGALDQG--RMMLRYMIDKGLSLTLPL 232
Y +A+ +F ++ D A+ T V+ AC G+LD+G ++ +I GL L + +
Sbjct: 11 YSDAIDMFVKLITDTEFNADNFTFPCVIKACT--GSLDRGLGEVIHGMVIKMGLLLDVFV 68
Query: 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI- 291
+LI MY K G + A+ VFH + +++ WN++I G + +GF K+ ++ EM
Sbjct: 69 GNALIAMYGKFGFVDAAVKVFHYMPVR--NLVSWNSIISGFSENGFSKDCFDMLVEMMAG 126
Query: 292 -VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVT 350
G+ PD T + +L CA V K G+ +VD S+ G +T
Sbjct: 127 EEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLT 186
Query: 351 EA 352
EA
Sbjct: 187 EA 188
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 7/186 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I S V L N + WN +I Y + +SI LF +M + G PD T+ +
Sbjct: 487 GCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGIL 546
Query: 71 KASGRLAKRELAVAVHAQIAK-TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM- 128
E + ++ G E L ++ M G G + A + MP +
Sbjct: 547 TVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPD 606
Query: 129 SVSWNSMLDGYAKCGEMNM----ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
S W+S+L GE+ + A ++ EL P +NV ++ +L + Y G + + + +
Sbjct: 607 SRVWSSLLSFCRNFGELEIGQIVAEKLLELEP-KNVENYVSLSNLYAGSGRWDDVRRVRQ 665
Query: 185 EMRDVG 190
++D+G
Sbjct: 666 MIKDIG 671
>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
Length = 533
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 139/424 (32%), Positives = 232/424 (54%), Gaps = 32/424 (7%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPDHLTYPFLAKASGRL 76
K+ +S + W +I Y +++ P +++ LF KM + G+ D + +A A G+L
Sbjct: 13 KIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQL 72
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
+ A VH + +L + NS++ M+
Sbjct: 73 GDVKNAHTVHGYAFRKSLIEELCVGNSILAMH---------------------------- 104
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
KCG AR VF++M ER+V+SW++++ GY + G EAL++F+EMRD + V
Sbjct: 105 ---TKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPV 161
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
T + ++ ACA+LG GR +++D + + L +L+DMYAKCG +++A+ +F+G+
Sbjct: 162 TALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGI 221
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
+ + WN +I G MHG KE+LELF+ MQ G+ P+ TF +LSAC+H GL+ E
Sbjct: 222 PPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDE 281
Query: 317 AWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
F + + + + +H+AC+VD L RAG + EA++ I +MP P+ + G+LL C
Sbjct: 282 GRKCFAEMKRLSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACK 341
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436
HG ++L + L++L+P+H G YV +SN+YA +W E R+ M+ +G+KK +
Sbjct: 342 IHGNMELGKTAASNLLQLEPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAF 401
Query: 437 SFVE 440
S +E
Sbjct: 402 SMIE 405
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 135/266 (50%), Gaps = 10/266 (3%)
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDVGSKANEVT 197
YAKCG R++F+ M +++V W+A+I Y + +EAL++F++M ++ G A+ +
Sbjct: 2 YAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIA 61
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+VSV A LG + + Y K L L + S++ M+ KCG ++A +VF +
Sbjct: 62 VVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMM- 120
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
+ DV+ WN+M+ G +G E+L LF EM+ P +T L ++SACA+ G
Sbjct: 121 -MERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLG 179
Query: 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS---LLTG 374
F + M + ++D ++ G + +A + +P PT GS L++G
Sbjct: 180 RKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIP--PTERNAGSWNVLISG 237
Query: 375 CMNHGKLDLAEIVGKKLVE--LQPDH 398
HG A + ++ E ++P+H
Sbjct: 238 YGMHGHGKEALELFSRMQEEGVEPNH 263
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 140/322 (43%), Gaps = 37/322 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN + + V + + WN+++ GY+++ +++ LF +M + P +T +
Sbjct: 108 GNTEKARLVFDMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMV 167
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP--TKM 128
A L R L H I + E D +SN+L+ MY CGD+ A ++F+G+P +
Sbjct: 168 SACAYLGFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERN 227
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
+ SWN ++ GY G KEAL +F M++
Sbjct: 228 AGSWNVLISGYGMHGHG-------------------------------KEALELFSRMQE 256
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G + N T S+L AC+H G +D+GR M ++L ++DM + G ++E
Sbjct: 257 EGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHACVVDMLGRAGLLQE 316
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A + + SD +W A++ +HG ++ L ++ + P+ + L+S
Sbjct: 317 AFDLIKEMPSPPSDG-VWGALLLACKIHGNME--LGKTAASNLLQLEPNHTGYYVLMSNI 373
Query: 309 -AHGGLVMEAWYFFKSLGKRGM 329
A E W + + +G+
Sbjct: 374 YAASNKWKEVWKLRQDMKNKGL 395
>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 145/413 (35%), Positives = 237/413 (57%), Gaps = 5/413 (1%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I G+++S + ++ +F M G+ PD + + A G L + + +H +
Sbjct: 178 WNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVI 237
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G D F+ ++LI MYG C VF+ M + N+++ G ++ G ++ A +
Sbjct: 238 KQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALE 297
Query: 151 VFELMP--ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
VF+ + NVVSW+++I + G EAL +F EM+ G K N VT+ +L AC ++
Sbjct: 298 VFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNI 357
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
AL G+ + + G+ + + ++LIDMYAKCG + + + F + +++ WN+
Sbjct: 358 AALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNR--NLVSWNS 415
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR- 327
++ G AMHG E++ +F MQ G PD ++F +LSAC GGL E W++F S+ +
Sbjct: 416 LMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNH 475
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
G+ + EHY+CMV L R+G++ EAY I QMP EP + + G+LL+ C H ++DL EI
Sbjct: 476 GVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIA 535
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
K++ EL+P + G Y+ LSN+YA W E R+ M +RG+KK PG+S++E
Sbjct: 536 AKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIE 588
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 160/313 (51%), Gaps = 8/313 (2%)
Query: 34 VIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTG 93
I+ +SK + I +F ML G+ PD P + K L+ + +H +G
Sbjct: 45 TIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSG 104
Query: 94 YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVF- 152
D + +SL+HMY + AR VFD +P V+ ++++ +A+ G + +++F
Sbjct: 105 LGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFY 164
Query: 153 ---ELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
+L E N+VSW+ +I G+ + G Y +A+++F+ M G K + ++ SVL A L
Sbjct: 165 QTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLD 224
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
G + Y+I +GL + ++LIDMY KC E VF+ E + DV NA+
Sbjct: 225 MPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFN--EMDEVDVGACNAL 282
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
+ GL+ +G V +LE+F Q G+ + +++ ++++C+ G MEA F+ + G+
Sbjct: 283 VTGLSRNGLVDNALEVFK--QFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGV 340
Query: 330 VPKSEHYACMVDA 342
P S C++ A
Sbjct: 341 KPNSVTIPCLLPA 353
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 89/183 (48%), Gaps = 2/183 (1%)
Query: 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY 220
+S I + K + + +F M G + L +V+ CA L AL G+ M +
Sbjct: 40 ISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCF 99
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+ GL L + +SL+ MY + +K+A VF + Q V+ +A+I A G VK
Sbjct: 100 ALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLP--QPGVVTSSALISRFARKGRVK 157
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMV 340
E+ ELF + + +G+ + +++ G++S G ++A F+++ G+ P + ++
Sbjct: 158 ETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVL 217
Query: 341 DAL 343
A+
Sbjct: 218 PAV 220
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 108/250 (43%), Gaps = 16/250 (6%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82
+ N + WN+++ GY+ ++I++F M R G PDH+++ + A + E
Sbjct: 405 MPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEG 464
Query: 83 VAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM-SVSWNSMLDGYA 140
+++ G E+ + + ++ + G G + A + MP + S W ++L
Sbjct: 465 WFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCR 524
Query: 141 KCGEMNM----ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE- 195
+++ A++VFEL P RN ++ L + Y + E ++ + MR G K N
Sbjct: 525 VHNRVDLGEIAAKRVFELEP-RNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPG 583
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
+ + + L A D + +I+K LT+ ++ S G + V
Sbjct: 584 YSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAKLTVEMKKS--------GYVPHTDFVLQD 635
Query: 256 VEKHQSDVLI 265
VE+ + ++
Sbjct: 636 VEEQDKEQIL 645
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 157/428 (36%), Positives = 236/428 (55%), Gaps = 49/428 (11%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA-SGRLA 77
V + + + W T+I YS +K +K++ V MLR GV P+ TY + +A G
Sbjct: 22 VFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRACDGLFN 81
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
R+L H I K G +SD+F+ ++LI D
Sbjct: 82 LRQL----HCCIIKIGLDSDVFVRSALI-------------------------------D 106
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
Y++ GE+ A +VF+ M ++V WS++I G+ + D EAL +F+ M+ G A + T
Sbjct: 107 VYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTT 166
Query: 198 LVSVLCACAHLGALDQGRMM----LRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
L SVL AC L L+ GR + L+Y D L L +L+DMY KCG++++A VF
Sbjct: 167 LTSVLRACTGLALLELGRQVHVHVLKYDQD------LILNNALLDMYCKCGSLEDANAVF 220
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313
V + DV+ W+ MI GLA +G+ KE+L+LF M+++GI P+ +T +G+L AC+H GL
Sbjct: 221 --VRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGL 278
Query: 314 VMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
V E Y+F S+ + G+ P EHY CM+D L RAG+++EA + I +M EP A +LL
Sbjct: 279 VEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALL 338
Query: 373 TGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432
C H +D+A K+++ L P G YV LSN+YA +RW++ R M RG+KK
Sbjct: 339 NACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKK 398
Query: 433 YPGWSFVE 440
PG S++E
Sbjct: 399 EPGCSWIE 406
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 143/300 (47%), Gaps = 37/300 (12%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G ++ + +V + + W+++I G++++ + ++++ LF +M RAG T
Sbjct: 109 SRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLT 168
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ +A LA EL VH + K Y+ DL ++N+L+ MY CG + A VF M K
Sbjct: 169 SVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEK 226
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+SW++M+ G A+ +GY KEAL +FE M+
Sbjct: 227 DVISWSTMIAGLAQ--------------------------NGY-----SKEALKLFESMK 255
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAI 246
+G K N VT+V VL AC+H G +++G M + G+ +ID+ + G +
Sbjct: 256 VLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRL 315
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
EA+ + + +E + D + W A++ +H V + + QI+ + P + LLS
Sbjct: 316 SEAVDLINEMEC-EPDAVTWRALLNACRVHRNV--DVAIHAAKQILRLDPQDAGTYVLLS 372
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
N +++ Y K G ++ A+ VF+ MP+RNVVSW+ +I Y +AL M G +
Sbjct: 4 NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
N T SVL AC L L R + +I GL + ++++LID+Y++ G ++ AL V
Sbjct: 64 PNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
F E D+++W+++I G A + E+L LF M+ G + T +L AC
Sbjct: 121 FD--EMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACT 175
>gi|449469438|ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 528
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 160/432 (37%), Positives = 237/432 (54%), Gaps = 11/432 (2%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y+C + +L IF +N++IRGY S+ P ++I ++ ++ G + T+P L KA
Sbjct: 62 YACGIFKNLQQRNIFMYNSMIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIKACA 121
Query: 75 RLAKREL---AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
L REL VHA + GYE+D F+ ++L+ Y S D+ AR +FD K V
Sbjct: 122 -LVYRELKRIGYLVHAHVIVLGYENDAFVVSALVEFY-SLFDLKVARVLFDKSSGKDVVV 179
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
W M+DGY K G++ AR +F+ MPERNV+SWSA++ Y + D++E L +F +M+
Sbjct: 180 WTVMVDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNI 239
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
N+ + SVL ACAHLGA+ QG M Y GL L T+L+DMY+KCG I+ AL
Sbjct: 240 VPNDSVIASVLTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALE 299
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF G+ D WNAMI G AM G V +SLELF +M G E TF+ +L+AC H
Sbjct: 300 VFEGIS--NKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATFVSILAACTHA 357
Query: 312 GLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTASM 367
+V FF + V P+ EHYAC+VD ++RAG V +A +F+ + A++
Sbjct: 358 KMVERGLEFFDQMYPVYRVQPQFEHYACVVDLMARAGMVEDAEKFVEEKMGGFSNVDANV 417
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
G++L+ C + +++ + + KL L G V N+++ R A+ R+
Sbjct: 418 WGAILSACRQYRNIEIGDRIWTKLSALGLLDGGTQVLSYNIFSEAGREMAAKEVRKKFSE 477
Query: 428 RGVKKYPGWSFV 439
KK PG S +
Sbjct: 478 ARSKKIPGCSVI 489
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 128/290 (44%), Gaps = 38/290 (13%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G+I+ + + + + W+ ++ YS+ + + + LF +M + + P+ +
Sbjct: 190 VGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDSVIASV 249
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L + +H+ + G +S+ ++ +L+ MY CG I A EVF+G+ K +
Sbjct: 250 LTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALEVFEGISNKDA 309
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+WN+M+ G+A G NVV ++L +F++M
Sbjct: 310 GAWNAMISGFAMTG---------------NVV----------------KSLELFDKMIAS 338
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKE 248
G++A E T VS+L AC H +++G M + ++D+ A+ G +++
Sbjct: 339 GTQATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQPQFEHYACVVDLMARAGMVED 398
Query: 249 ALIVFHGVEK----HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
A EK D +W A++ + ++ ++T++ +G+
Sbjct: 399 AEKFVE--EKMGGFSNVDANVWGAILSACRQYRNIEIGDRIWTKLSALGL 446
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G I+ + +V +SN WN +I G++ + N KS+ LF KM+ +G T+
Sbjct: 289 SKCGYIESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATFV 348
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYE 95
+ LA HA++ + G E
Sbjct: 349 SI-----------LAACTHAKMVERGLE 365
>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 635
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 150/437 (34%), Positives = 245/437 (56%), Gaps = 34/437 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A S G ++ + +V + + WNT+I Y++++ ++++ +F++M G
Sbjct: 104 NAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEF 163
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T + A G +H KT + +L++ +L
Sbjct: 164 TISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTAL-------------------- 203
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
LD YAKCG + A QVFE M +++ V+WS+++ GYV+ +Y+EAL+++
Sbjct: 204 -----------LDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYR 252
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+ + + N+ TL SV+CAC++L AL +G+ M + G + + +S +DMYAKCG
Sbjct: 253 RAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCG 312
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+++E+ I+F V+ + ++ +WN +I G A H KE + LF +MQ G+ P+E+TF L
Sbjct: 313 SLRESYIIFSEVQ--EKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSL 370
Query: 305 LSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LS C H GLV E FFK + G+ P HY+CMVD L RAG ++EAYE I +P +P
Sbjct: 371 LSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDP 430
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
TAS+ GSLL C + L+LAE+ +KL EL+P++ G +V LSN+YA K+W+E +R+
Sbjct: 431 TASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRK 490
Query: 424 AMETRGVKKYPGWSFVE 440
+ VKK G S+++
Sbjct: 491 LLRDCDVKKVRGKSWID 507
>gi|147809483|emb|CAN60147.1| hypothetical protein VITISV_041924 [Vitis vinifera]
Length = 480
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 148/363 (40%), Positives = 219/363 (60%), Gaps = 12/363 (3%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+H + K G DLFI SL+ +Y + A VF+ + VS N+MLD K G+
Sbjct: 25 LHTHVIKRGLSHDLFIQTSLVVLYARLCKVSDACXVFEEISRPCVVSSNAMLDALGKNGD 84
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF------EEMRDVGSKANEVTL 198
M A +FE MPER+VVSW+++I+G+ + ++EA+ F E++R K NE T
Sbjct: 85 MGSALFLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRSCLVKPNEATF 144
Query: 199 VSVLCACAHL---GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
VSVL +C +L GAL QG+ + Y+I + T+ + T+LI +Y K G ++ + +F+G
Sbjct: 145 VSVLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGCLENXMKIFNG 204
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
+ V WNAMI LA +G K++L+LF +M++ G+ PDE+TF+ +++ACA V+
Sbjct: 205 MVV--KGVCTWNAMISSLACNGREKQALDLFEKMKMXGLCPDEVTFVAVITACARSKFVV 262
Query: 316 EAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
FF+S+ G+VP+ HY C+VD L RAG + EA EFI MP EP A++LG+LL
Sbjct: 263 LGLGFFQSMWCDFGVVPRMXHYGCVVDLLGRAGLLEEATEFIKXMPFEPDATVLGALLGA 322
Query: 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYP 434
C HG ++L VG++L+E QP H GRYV LSN+YA + W A R+AM G+ K P
Sbjct: 323 CKVHGAIELGNEVGRRLLEXQPHHCGRYVTLSNIYAGGEIWGHAADWRKAMTEAGISKIP 382
Query: 435 GWS 437
+S
Sbjct: 383 AYS 385
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 119/285 (41%), Gaps = 42/285 (14%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML------RAGV 59
AL G++ + + + + W ++I G+ +++ ++I FVKM+ V
Sbjct: 78 ALGKNGDMGSALFLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRSCLV 137
Query: 60 SPDHLTYPFLAKASGRL---AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
P+ T+ + + L +H I + E +F+ +LI +YG G +
Sbjct: 138 KPNEATFVSVLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGCLEN 197
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
++F+GM K +WN+M+ A C G
Sbjct: 198 XMKIFNGMVVKGVCTWNAMISSLA-CN------------------------------GRE 226
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTS 235
K+AL +FE+M+ G +EVT V+V+ ACA + G + M D G+ +
Sbjct: 227 KQALDLFEKMKMXGLCPDEVTFVAVITACARSKFVVLGLGFFQSMWCDFGVVPRMXHYGC 286
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
++D+ + G ++EA F + D + A++G +HG ++
Sbjct: 287 VVDLLGRAGLLEEA-TEFIKXMPFEPDATVLGALLGACKVHGAIE 330
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 35/135 (25%)
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK------------ 258
L QG + ++I +GLS L +QTSL+ +YA+ + +A VF + +
Sbjct: 19 LLQGTPLHTHVIKRGLSHDLFIQTSLVVLYARLCKVSDACXVFEEISRPCVVSSNAMLDA 78
Query: 259 -----------------HQSDVLIWNAMIGGLAMHGFVKESLELFTEM------QIVGIT 295
+ DV+ W ++I G + +E+++ F +M + +
Sbjct: 79 LGKNGDMGSALFLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRSCLVK 138
Query: 296 PDEITFLGLLSACAH 310
P+E TF+ +LS+C +
Sbjct: 139 PNEATFVSVLSSCTN 153
>gi|147777522|emb|CAN64813.1| hypothetical protein VITISV_024998 [Vitis vinifera]
Length = 513
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 151/419 (36%), Positives = 240/419 (57%), Gaps = 8/419 (1%)
Query: 27 RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP--DHLTYPFLAKASGRLAKRELAVA 84
R+ + ++ + + ++SLF M A +P D +P K+ + L A
Sbjct: 10 RLLSYTKLLASHVNQGRHHDALSLFHHM-HASSAPALDAFVFPLALKSCAAAHRPNLGAA 68
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+HA + K S+ F++ +L+ MYG C + AR +FD +P + V WN+M+ Y G
Sbjct: 69 IHAHVTKFSLVSNPFVACALVDMYGKCVSVSSARHLFDEIPHRNIVVWNAMISIYTHSGR 128
Query: 145 MNMARQVFELMP-ERNVVSWSALIDGY--VKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
+ A +FE+M E N +++A+I G ++ G +K AL + M +VG K N +TL+++
Sbjct: 129 VADALGLFEVMDVEPNASTFNAIISGLSGLEDGSFK-ALSFYRRMGEVGLKQNLITLLAL 187
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
L AC L AL + + Y I G+ L++ L++ Y +CG I + VF + +
Sbjct: 188 LPACVDLAALTLIKEIHGYAIRNGIDPHPHLRSCLVEAYGRCGCIVNSQCVFQSISMSER 247
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321
DV+ W+++I A+HG + +LE F +M++ + PD ITFLG+L AC+H GL EA +F
Sbjct: 248 DVVAWSSLISAYALHGDARTALETFEQMEMAKVQPDGITFLGVLKACSHAGLADEALGYF 307
Query: 322 KSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
+ K G+ S+HY+C+VDALSRAG++ EAYE I MP++ TA G+LL C +G+
Sbjct: 308 GRMCKDYGVEASSDHYSCVVDALSRAGRLYEAYEIIQGMPVKATAKTWGALLGACRTYGE 367
Query: 381 LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
++LAEI G+ L EL+PD+ YV L+ +YA R +EA+ R M GVK PG S++
Sbjct: 368 VELAEIAGRALFELEPDNAANYVLLARIYASVGRHEEAQRMRREMNEMGVKAAPGSSWM 426
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 7/177 (3%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82
+S + W+++I Y+ + ++ F +M A V PD +T+ + KA + A
Sbjct: 244 MSERDVVAWSSLISAYALHGDARTALETFEQMEMAKVQPDGITFLGVLKACSHAGLADEA 303
Query: 83 VAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV-SWNSMLDGYA 140
+ ++ K G E+ + ++ G + A E+ GMP K + +W ++L
Sbjct: 304 LGYFGRMCKDYGVEASSDHYSCVVDALSRAGRLYEAYEIIQGMPVKATAKTWGALLGACR 363
Query: 141 KCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
GE+ +A R +FEL P+ N ++ L Y G ++EA + EM ++G KA
Sbjct: 364 TYGEVELAEIAGRALFELEPD-NAANYVLLARIYASVGRHEEAQRMRREMNEMGVKA 419
>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 149/421 (35%), Positives = 230/421 (54%), Gaps = 7/421 (1%)
Query: 25 NPR--IFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPDHLTYPFLAKASGRLAKREL 81
PR I+ +++++ S S +P ++ + ML A + PDH +A RL R L
Sbjct: 146 TPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRL 205
Query: 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
+HA + Y D + +SL+ MY CG R+VFD M K SV W +++ GYA
Sbjct: 206 GRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYAS 265
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS- 200
G A Q+F MP RN+ +W+ALI G V G+ A+ +F EMR G + ++ ++S
Sbjct: 266 NGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSI 325
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
V+ A L A GR + + G + + +LIDMY+KC I A VF G+
Sbjct: 326 VIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFR- 384
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
DV+ W M+ G A HG +E+L L+ M + G P+E+TF+GL+ AC+H GLV +
Sbjct: 385 -DVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQL 443
Query: 321 FKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
F+S+ + G+ P+ +HY C +D LSR+G + EA E + MP EP + G+LL+ C +
Sbjct: 444 FESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYK 503
Query: 380 KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
++ + KL+EL+P Y+ LSNVYA+ +WD R+ M ++K PG+S++
Sbjct: 504 DAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWI 563
Query: 440 E 440
E
Sbjct: 564 E 564
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 123/295 (41%), Gaps = 65/295 (22%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNK------------------------ 46
G+ D KV +S W ++ GY+ + +
Sbjct: 236 GSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLV 295
Query: 47 -------SISLFVKMLRAGVS-PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDL 98
++ LFV+M R GV D + S LA L +H + G+ S++
Sbjct: 296 NTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNM 355
Query: 99 FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
+ N+LI MY C DI+ AREVF+G+ + +SW +M+ G A+ G
Sbjct: 356 IVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRA------------- 402
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
+EAL +++ M G+K NEVT V ++ AC+H G + +GR +
Sbjct: 403 ------------------EEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLF 444
Query: 219 RYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
M ++ G++ L T +D+ ++ G + EA + + ++ D W A++
Sbjct: 445 ESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTM-PYEPDEATWGALLSA 498
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 3/157 (1%)
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS-K 192
+++ YAK + A +F+ P R++ +S+L+ + AL I M +
Sbjct: 125 ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALH 184
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ + SV A L + GR + + + + +++SL+DMY KCG+ + V
Sbjct: 185 PDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKV 244
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
F + S ++W A++ G A +G +E+L+LF M
Sbjct: 245 FDSMSAKNS--VVWTALVSGYASNGRSEEALQLFRSM 279
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 146/349 (41%), Positives = 220/349 (63%), Gaps = 5/349 (1%)
Query: 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
E D+ + N+++ Y G+++ AR +FD MP + +SWN++L+GYA G+M +VF+
Sbjct: 84 ERDIVLWNTMVAGYIEMGNMMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDE 143
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK-ANEVTLVSVLCACAHLGALDQ 213
M ERNV SW+ LI GY + G E L F+ M D GS N+ TL VL ACA LGA D
Sbjct: 144 MLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDF 203
Query: 214 GRMMLRYMIDKGLS-LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
G+ + +Y + G + + + ++ +LIDMY KCGAI+ A+ VF G+++ D++ WN MI G
Sbjct: 204 GKRVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRR--DLISWNTMING 261
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVP 331
LA HG E+L+LF EM+ GI+PD++TF+G+L AC H GLV + +F S+ + P
Sbjct: 262 LAAHGHGTEALDLFHEMKNCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITP 321
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL 391
+ EH C+VD LSRAG +T+A EFI +MP++ A + +LL + K+D E+ K+L
Sbjct: 322 QIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDTGELALKEL 381
Query: 392 VELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++L+P + +V LSN+Y R+D+A + AM G KK G S++E
Sbjct: 382 IKLEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGISWIE 430
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 124/266 (46%), Gaps = 35/266 (13%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPF 68
+G+++ +V + +F WN +I+GY+++ ++ + F +M+ G V P+ T
Sbjct: 131 IGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTL 190
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYES-DLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A +L + VH GY D+ + N+LI MYG CG I A EVF G+ +
Sbjct: 191 VLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRR 250
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+SWN+M++G A G EAL +F EM+
Sbjct: 251 DLISWNTMINGLAAHGHGT-------------------------------EALDLFHEMK 279
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAI 246
+ G ++VT V VLCAC H+G ++ G M D ++ + ++D+ ++ G +
Sbjct: 280 NCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFL 339
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGG 272
+A + F ++D +IW ++G
Sbjct: 340 TQA-VEFINKMPVKADAVIWATLLGA 364
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 25/197 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + +V + + WNT+I G + + +++ LF +M G+SPD +T+ +
Sbjct: 235 GAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISPDKVTFVGVL 294
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV----------YAREV 120
A + E +A Y + +F S+ CG +V A E
Sbjct: 295 CACKHMGLVEDGLA---------YFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEF 345
Query: 121 FDGMPTKM-SVSWNSMLDG---YAKCGEMNMA-RQVFELMPERNVVSWSALIDGYVKCGD 175
+ MP K +V W ++L Y K +A +++ +L P RN ++ L + Y G
Sbjct: 346 INKMPVKADAVIWATLLGASKVYKKVDTGELALKELIKLEP-RNPANFVMLSNIYGDAGR 404
Query: 176 YKEALVIFEEMRDVGSK 192
+ +A + MRD G K
Sbjct: 405 FDDAARLKVAMRDTGFK 421
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 152/437 (34%), Positives = 239/437 (54%), Gaps = 45/437 (10%)
Query: 9 YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY-- 66
YLG++ KV + I WNTVI G +++ ++ + +M A + PD T
Sbjct: 185 YLGSLR---KVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSS 241
Query: 67 --PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
P A+ L +E +H + GY++D+FI +SLI MY
Sbjct: 242 VLPIFAEYVNLLKGKE----IHGYAIRNGYDADVFIGSSLIDMY---------------- 281
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
AKC ++ + +VF ++P+ + +SW+++I G V+ G + E L F+
Sbjct: 282 ---------------AKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQ 326
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+M K N V+ S++ ACAHL L G+ + Y+I + + ++L+DMYAKCG
Sbjct: 327 QMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCG 386
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
I+ A +F +E + D++ W AMI G A+HG +++ LF M++ G+ P+ + F+ +
Sbjct: 387 NIRTARWIFDKMELY--DMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAV 444
Query: 305 LSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L+AC+H GLV EAW +F S+ + ++P EHYA + D L R G++ EAYEFI M +EP
Sbjct: 445 LTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEP 504
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
T S+ +LL C H ++LAE V KKL + P + G YV LSN+Y+ RW +AR R
Sbjct: 505 TGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRI 564
Query: 424 AMETRGVKKYPGWSFVE 440
AM +G+KK P S++E
Sbjct: 565 AMRDKGMKKKPACSWIE 581
>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 805
Score = 270 bits (691), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 165/511 (32%), Positives = 254/511 (49%), Gaps = 75/511 (14%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
M+SF L G I + +V + N + WN++I GY ++ + + LF +M +G+
Sbjct: 171 MISF--LVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIK 228
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P +T L +A G + +L +H + G +D+ + S + MY GDI AR V
Sbjct: 229 PSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWV 288
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP------------------------ 156
F MPT+ VSWN+M+ G + G + + +F +
Sbjct: 289 FYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASL 348
Query: 157 --------------ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV------------- 189
E N++ +A++D Y KCG K+A +F M+D
Sbjct: 349 ATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLA 408
Query: 190 ------------------GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
G AN VT VS++ +CAHLG+L +GR + ++ G + +
Sbjct: 409 QNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIV 468
Query: 232 LQTSLIDMYAKCGAIKEALIVF-HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ 290
T+L+DMYAKCG I A +F HG DV++WN+MI G MHG +++ ++ +M
Sbjct: 469 NMTALVDMYAKCGKINLAERIFSHG--SISKDVVLWNSMITGYGMHGHGYQAVGIYHKMI 526
Query: 291 IVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQV 349
G+ P++ TFL LLSAC+H LV + F S+ + + P +HYAC+VD LSRAG+
Sbjct: 527 EEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRF 586
Query: 350 TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409
EA I +MP +P ++L +LL+GC H ++L KL+ L + G Y+ LSN+Y
Sbjct: 587 EEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIY 646
Query: 410 AIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
A +RWD+ R M RG+KK PG+S VE
Sbjct: 647 AEARRWDKVDYIRGLMRNRGLKKTPGYSLVE 677
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 106/426 (24%), Positives = 179/426 (42%), Gaps = 74/426 (17%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A S L +++ + V P+ N ++ GY +S +++ LF M + D +
Sbjct: 73 AYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCS 132
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
F KA E+ + + + + G E + F+ +S+I
Sbjct: 133 CTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMI-------------------- 172
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
S L + K GE A++VF+ MP ++VV W+++I GYV+ G + A +F E
Sbjct: 173 --------SFLVKFGKIGE---AQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFE 221
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M G K + +T+ S++ AC +G L G+ M Y++ GL + + TS +DMY+K G
Sbjct: 222 MHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGD 281
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
I+ A VF+ + +++ WNAMI G +G V ES +LF + D T + LL
Sbjct: 282 IESARWVFYKMPTR--NLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLL 339
Query: 306 SACA-----------HG-----------------------GLVMEAWYFFKSLGKRGMVP 331
C+ HG G + +A + F + R ++
Sbjct: 340 QGCSQTASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVIT 399
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS---MLGSLLTGCMNHGKLDLAEIVG 388
+ M+ L++ G +A QM E A+ SL+ C + G L +
Sbjct: 400 ----WTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIH 455
Query: 389 KKLVEL 394
L L
Sbjct: 456 GHLFRL 461
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 122/301 (40%), Gaps = 44/301 (14%)
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
+ HAQI +D F++ L+ Y + AR VFD + N+ML CG
Sbjct: 50 STHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAML-----CG 104
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
Y++ G Y+E L +F MR + + + L
Sbjct: 105 --------------------------YLQSGRYRETLELFGLMRSRNLEVDSCSCTFALK 138
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
ACA + G ++ ++KG+ + +S+I K G I EA VF G+ DV
Sbjct: 139 ACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMP--NKDV 196
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA-----HGGLVMEAW 318
+ WN++IGG G + +LF EM GI P IT L+ AC G M +
Sbjct: 197 VCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGY 256
Query: 319 YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNH 378
LG +V S VD S+ G + A +MP S ++++GC+ +
Sbjct: 257 VLGLGLGNDILVLTS-----FVDMYSKMGDIESARWVFYKMPTRNLVSW-NAMISGCVRN 310
Query: 379 G 379
G
Sbjct: 311 G 311
>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 741
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 153/428 (35%), Positives = 236/428 (55%), Gaps = 7/428 (1%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V L + W ++ Y P +++F +M GV P+ +T + A L
Sbjct: 188 RVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELK 247
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+ A+H + G ++F+ ++L+ +Y C + AR VFD MP + VSWN +L
Sbjct: 248 DLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLT 307
Query: 138 GYAKCGEMNMARQVFELMPERNV----VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
Y E + +F M + V +W+A+I G ++ G ++A+ + +M+++G K
Sbjct: 308 AYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKP 367
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
N++T+ S L AC+ L +L G+ + Y+ L L T+L+ MYAKCG + + VF
Sbjct: 368 NQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVF 427
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313
+ + DV+ WN MI AMHG +E L LF M GI P+ +TF G+LS C+H L
Sbjct: 428 DMICR--KDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRL 485
Query: 314 VMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
V E F S+G+ +V P + HYACMVD SRAG++ EAYEFI +MP+EPTAS G+LL
Sbjct: 486 VEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALL 545
Query: 373 TGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432
C + ++LA+I KL E++P++ G YV L N+ K W EA R M+ RG+ K
Sbjct: 546 GACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITK 605
Query: 433 YPGWSFVE 440
PG S+++
Sbjct: 606 TPGCSWLQ 613
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 161/351 (45%), Gaps = 38/351 (10%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G+ + ++ ++ P +T+I ++ PN++I L+ + G+ P + + +
Sbjct: 79 VGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTV 138
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
AKA G VH + G SD F+ N+LIH YG C
Sbjct: 139 AKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKC------------------ 180
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
KC E AR+VF+ + ++VVSW+++ YV CG + L +F EM
Sbjct: 181 -----------KCVEG--ARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWN 227
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G K N VTL S+L AC+ L L GR + + + G+ + + ++L+ +YA+C ++K+A
Sbjct: 228 GVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQA 287
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+VF + H+ DV+ WN ++ + + L LF++M G+ DE T+ ++ C
Sbjct: 288 RLVF-DLMPHR-DVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCM 345
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS-----RAGQVTEAYEF 355
G +A + + G P + + A S R G+ Y F
Sbjct: 346 ENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVF 396
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 97/237 (40%), Gaps = 2/237 (0%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
+L G+ A+Q+F+ +P+ + + S LI + G EA+ ++ +R G K +
Sbjct: 72 LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPH 131
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
++V AC G + + + I G+ L +LI Y KC ++ A VF
Sbjct: 132 NSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFD 191
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
+ DV+ W +M G + L +F EM G+ P+ +T +L AC+ +
Sbjct: 192 DLV--VKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDL 249
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
+ GM+ + +V +R V +A MP S G L
Sbjct: 250 KSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVL 306
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
Length = 1401
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 159/422 (37%), Positives = 236/422 (55%), Gaps = 10/422 (2%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPN-KSISLFVKMLRAGVSPDHLTYPFLAK 71
+ Y+ VL ++NP F +NT+IR Y+ + + S FV+M R V PD TYPF+ K
Sbjct: 478 VSYATSVLRFITNPSTFCFNTIIRIYTLHEPLSLSSQRFFVEMRRRSVPPDFHTYPFVFK 537
Query: 72 ASGRLAKRELAV--AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A +L++ +H Q + G SDLF N+LI Y I A ++FD P +
Sbjct: 538 ACAAKKNGDLSLVKTLHCQALRFGLLSDLFTLNTLIRAYSLMAPIGSALQLFDENPQRDV 597
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
V++N ++DG K E+ AR++F+ MP R++VSW++LI GY + +EA+ +F+EM +
Sbjct: 598 VTYNVLIDGLVKACEIVRARELFDSMPFRDLVSWNSLIAGYAQMNQCREAISLFDEMIGL 657
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G K + V +VS L ACA G L++G+ + Y K L + L T L+D YAKCG I A
Sbjct: 658 GLKPDNVAIVSTLSACAQSGDLEKGKAIHDYTKKKRLFIDSFLATGLVDFYAKCGFIDTA 717
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ +FH + WNAMI GLAMHG + +++ F +M GI PD ++F+ +L C+
Sbjct: 718 MEIFH--LSSDKTLFTWNAMITGLAMHGNGELTVDYFHKMVSSGIKPDGVSFISVLVGCS 775
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKS-EHYACMVDALSRAGQVTEAYEFICQMPLE--PTAS 366
H GLV EA F + V + +HY CM D L RAG + EA E I QMP +
Sbjct: 776 HSGLVGEARKLFDQMRSLYDVDREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGKREK 835
Query: 367 MLG--SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
+L LL GC HG +++AE K++ L P+ G Y + +YA +RW++ RE
Sbjct: 836 LLAWSGLLGGCRIHGNIEVAEKAAKRVKALSPEDGGVYKVMVEMYANAERWEDVVKVREM 895
Query: 425 ME 426
+E
Sbjct: 896 IE 897
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 137/428 (32%), Positives = 241/428 (56%), Gaps = 7/428 (1%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
+V + + WN +I Y + + ++++ L+ K+ G T+ + A +
Sbjct: 263 EVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVK 322
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
VH+ I + G +S++ ++ +L++MY CG + AR+VF+ M + +V+W++++
Sbjct: 323 ALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIG 382
Query: 138 GYAKCG---EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV-GSKA 193
YA G + AR+VF+ + R+ +SW+A+I YV+ G A+ IF EM G K
Sbjct: 383 AYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKP 442
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+ VT ++VL ACA LG L + + + + + L + + +LI+MYA+CG+++EA +F
Sbjct: 443 DAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLF 502
Query: 254 HGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313
+ + V+ W AM+ + +G E+L+LF EM + G+ PD++T+ +L C HGG
Sbjct: 503 AAAK--EKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGS 560
Query: 314 VMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
+ + W +F + + + P ++H+A MVD L R+G++ +A E + MP EP + L
Sbjct: 561 LEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFL 620
Query: 373 TGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432
T C HGKL+L E +++ EL P Y+ +SN+YA W++ + R+ ME RG+KK
Sbjct: 621 TACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKK 680
Query: 433 YPGWSFVE 440
PG SF+E
Sbjct: 681 LPGLSFIE 688
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/426 (24%), Positives = 211/426 (49%), Gaps = 42/426 (9%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
G++ + ++ L WN VI +S+S + + ++ +F K ++ V P+ TY +
Sbjct: 155 FGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIF-KEMKCDVKPNSTTYINV 213
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+HA+I G+++DL ++ +LI+MYG
Sbjct: 214 ISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYG-------------------- 253
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
KCG + AR+VF+ M +R++VSW+ +I YV GD+ EAL +++++
Sbjct: 254 -----------KCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDME 302
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G K + T VS+L AC+ + AL QGR++ +++++GL + + T+L++MYAKCG+++EA
Sbjct: 303 GFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEA 362
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF+ ++ D + W+ +IG A +G+ K++ + +G + D I++ +++
Sbjct: 363 RKVFNAMKNR--DAVAWSTLIGAYASNGYGKDARKARKVFDRLG-SRDTISWNAMITTYV 419
Query: 310 HGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEA---YEFICQMPLEPTA 365
G + A F+ + G G+ P + + +++A + G+++E + I + LE
Sbjct: 420 QNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNV 479
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
+ +L+ G L+ AE + + + + ++ + R+ EA + M
Sbjct: 480 VVTNTLINMYARCGSLEEAE---RLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEM 536
Query: 426 ETRGVK 431
+ GVK
Sbjct: 537 DLEGVK 542
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 102/364 (28%), Positives = 159/364 (43%), Gaps = 55/364 (15%)
Query: 110 SCGDIVYAREVFDGMP----TKMSVSWNSMLDGYAKCGEMNMARQVFELMP--ERNVVSW 163
SCGD+V R + + + + ++ N+++ Y KC + AR VFE M +RNVVSW
Sbjct: 19 SCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSW 78
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
+A+I Y + G EALV++ M G + VT VSVL AC+ L QGR + +
Sbjct: 79 NAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA---QGREIHNRVFY 135
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
GL L +L+ MYA+ G++ +A +F ++ D WNA+I + G +L
Sbjct: 136 SGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR--DETSWNAVILAHSQSGDWSGAL 193
Query: 284 ELFTEMQIVGITPDEITFLGLLSA-----------------CAHG--------------- 311
+F EM+ + P+ T++ ++S A+G
Sbjct: 194 RIFKEMK-CDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMY 252
Query: 312 ---GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE---PTA 365
G EA F + KR MV + C V G EA E ++ +E T
Sbjct: 253 GKCGSSHEAREVFDKMKKRDMVSWNVMIGCYV----LNGDFHEALELYQKLDMEGFKRTK 308
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD-GRYVGLSNVYAIFKRWDEARTTREA 424
+ S+L C + L +V ++E D + L N+YA +EAR A
Sbjct: 309 ATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNA 368
Query: 425 METR 428
M+ R
Sbjct: 369 MKNR 372
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 86/367 (23%), Positives = 155/367 (42%), Gaps = 70/367 (19%)
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD++T+ + + A+H +I + +E D + N+LI MYG C +V AR V
Sbjct: 5 PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64
Query: 121 FDGMPTKMS--VSWNSMLDGYAK--------------------------------CGEMN 146
F+ M + VSWN+M+ YA+ C +
Sbjct: 65 FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA 124
Query: 147 MARQVFELMPERNVVSW----SALIDGYVKCGDYKEALVIFE--EMRDVGS--------- 191
R++ + + S+ +AL+ Y + G +A +F+ + RD S
Sbjct: 125 QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHS 184
Query: 192 -------------------KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPL 232
K N T ++V+ + L +GR + ++ G L +
Sbjct: 185 QSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVV 244
Query: 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292
T+LI+MY KCG+ EA VF ++K D++ WN MIG ++G E+LEL+ ++ +
Sbjct: 245 ATALINMYGKCGSSHEAREVFDKMKKR--DMVSWNVMIGCYVLNGDFHEALELYQKLDME 302
Query: 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352
G + TF+ +L AC+ + + + +RG+ + +V+ ++ G + EA
Sbjct: 303 GFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEA 362
Query: 353 YEFICQM 359
+ M
Sbjct: 363 RKVFNAM 369
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 66/118 (55%)
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ + VT ++VLC+C+ G + +GR + + + +LI MY KC ++ +A
Sbjct: 4 QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF ++ Q +V+ WNAMI A +G E+L L+ M + G+ D +TF+ +L AC+
Sbjct: 64 VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 88/190 (46%), Gaps = 11/190 (5%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP--- 67
G+++ + ++ + + W ++ +S+ +++ LF +M GV PD +TY
Sbjct: 493 GSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSIL 552
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
F+ G L + A++ +D F +++ + G G + A+E+ + MP +
Sbjct: 553 FVCTHGGSLEQGWRYFTDMAELHALAPTADHFA--AMVDLLGRSGRLFDAKELLESMPFE 610
Query: 128 MS-VSWNSMLDGYAKCGEMNM----ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
V+W + L G++ + A +V+EL P + + A+ + Y G +++ +
Sbjct: 611 PDPVAWMTFLTACRIHGKLELGEAAAERVYELDPS-STAPYIAMSNIYAAHGMWEKVASV 669
Query: 183 FEEMRDVGSK 192
++M + G K
Sbjct: 670 RKKMEERGLK 679
>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Cucumis sativus]
Length = 595
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 150/415 (36%), Positives = 238/415 (57%), Gaps = 4/415 (0%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPDHLTYPFLAKASGRLAKRELAVAVH 86
I WN ++ GYS+ + K LF ML + V P+ LT + +A + + VH
Sbjct: 174 IVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIFGIEVH 233
Query: 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
+ ++ + D+ + N++I +Y CG + YARE+F+ M K ++++ SM+ GY G +N
Sbjct: 234 RFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVN 293
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
A +F + +W+A+I G V+ + A+ IF M+ G + N VTL S+L +
Sbjct: 294 QAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFS 353
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
H L G+ + Y I + + T++ID YAKCG + A +VF ++ ++ W
Sbjct: 354 HFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRS--LIAW 411
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-G 325
++I A+HG +L LF EM GI PD++TF +L+ACAH G + EAW F L
Sbjct: 412 TSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLP 471
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
+ G+ P EHYACMV LSRAG++++A EFI +MPLEPTA + G+LL G G ++L +
Sbjct: 472 EYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGK 531
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
V +L E++P++ G YV ++N+Y+ RW +A T R+ M+ +KK PG S++E
Sbjct: 532 YVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIE 586
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 160/348 (45%), Gaps = 42/348 (12%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-- 58
++SF + S G+I + V + IF WN ++ Y+ + LF ++ +
Sbjct: 44 LISFYSKS--GSIRDAYNVFGKIPRKNIFSWNALLISYTLHNMHTDLLKLFSSLVNSNST 101
Query: 59 -VSPDHLTYPFLAKASGRL-AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116
V PD T KA L + LA VH+ I + G E D+F+ N+LI Y C ++V
Sbjct: 102 DVKPDRFTVTCALKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVL 161
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
AR +FD MP + VSWN+ML GY++ G +++F +M
Sbjct: 162 ARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVM--------------------- 200
Query: 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236
+ + K N +T VSVL ACA L G + R++ + + + + L ++
Sbjct: 201 ---------LSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLWNAV 251
Query: 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296
I +YAKCG++ A +F E + D + + +MI G +HGFV ++++LF E + P
Sbjct: 252 IGLYAKCGSLDYARELFE--EMLEKDAITYCSMISGYMVHGFVNQAMDLFREQE----RP 305
Query: 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS 344
T+ ++S A F+++ G P + A ++ S
Sbjct: 306 RLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFS 353
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 120/280 (42%), Gaps = 33/280 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + + PR+ WN VI G ++ ++ +F M G P+ +T +
Sbjct: 290 GFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASIL 349
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ + +H + Y+ +++++ ++I Y CG + A+ VFD + + +
Sbjct: 350 PVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLI 409
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W S++ YA G+ N+ AL +F EM G
Sbjct: 410 AWTSIISAYAVHGDANV-------------------------------ALSLFYEMLTNG 438
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ ++VT SVL ACAH G LD+ + ++ + G+ + ++ + ++ G + +A
Sbjct: 439 IQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDA 498
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
+ F + +W A++ G ++ G V+ +F +
Sbjct: 499 -VEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRL 537
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 134/284 (47%), Gaps = 9/284 (3%)
Query: 106 HMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSA 165
H++ G ++AR V + + + ++ Y+K G + A VF +P +N+ SW+A
Sbjct: 16 HLFFRVGKQLHARLVLSSVVPDNFLG-SKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNA 74
Query: 166 LIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR----YM 221
L+ Y + + L +F + + S + +V CA L +L + + ++
Sbjct: 75 LLISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSNSGLAKEVHSFI 134
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
+ +GL + + +LI Y++C + A I+F + + D++ WNAM+ G + G ++
Sbjct: 135 LRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMP--ERDIVSWNAMLAGYSQGGSYEK 192
Query: 282 SLELFTEM-QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMV 340
ELF M + + P+ +T + +L ACA ++ + + + + + ++
Sbjct: 193 CKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLWNAVI 252
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
++ G + A E +M LE A S+++G M HG ++ A
Sbjct: 253 GLYAKCGSLDYARELFEEM-LEKDAITYCSMISGYMVHGFVNQA 295
>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 173/498 (34%), Positives = 252/498 (50%), Gaps = 70/498 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM-------LRAGVS--- 60
G +D + ++ + + + WN ++ GY + + K+I F M LRA VS
Sbjct: 166 GTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGLI 225
Query: 61 -PDHLTYP--FLAKASGRLAKRELAVAVHAQIA----------------------KTGYE 95
D L L + G + K +L A + IA GY
Sbjct: 226 QNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYS 285
Query: 96 SDLFIS-NSLIHMYGSCGDIVYAREVFDGM------------------------------ 124
IS NS+I Y GDIV ARE+FD M
Sbjct: 286 RRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSR 345
Query: 125 -PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
P ++SWN M+ G+++ G + +A +F+ +PE+++VSW+++I GY K DYK A+ IF
Sbjct: 346 MPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIF 405
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
+M+ G K + TL S+L ACA L L G + ++ K LP+ SL+ MY++C
Sbjct: 406 LQMQLEGKKPDRHTLSSILSACAGLVDLVLG-TQIHQLVTKAFIADLPINNSLVTMYSRC 464
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
GAI EA +VF + Q DV+ WNAMIGG A HGF E+L+LF M+ + P ITF+
Sbjct: 465 GAIVEARMVFDEM-NLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFIS 523
Query: 304 LLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+L+ACAH GL+ E F S+ G+ P+ EHYA +VD + R GQ+ EA I MP E
Sbjct: 524 VLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCE 583
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P ++ G+LL C H +++A + L++LQP+ YV L N+YA RWD+A R
Sbjct: 584 PDKAVWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMR 643
Query: 423 EAMETRGVKKYPGWSFVE 440
ME V+K G+S V+
Sbjct: 644 TMMEKNNVQKDAGYSRVD 661
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 136/278 (48%), Gaps = 35/278 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S S +G++ + + + + WN++I GY K+++ ++++F++M G PD
Sbjct: 359 SGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRH 418
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T + A L L +H Q+ + +DL I+NSL+ MY CG IV AR VFD M
Sbjct: 419 TLSSILSACAGLVDLVLGTQIH-QLVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEM 477
Query: 125 PTKMSV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+ V SWN+M+ GYA G A Q+F+LM + NV
Sbjct: 478 NLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNV----------------------- 514
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAK 242
+ + +T +SVL ACAH G +++GR M++ G+ + +L+D+ +
Sbjct: 515 --------QPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGR 566
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G ++EA+ + + + + D +W A++G +H V+
Sbjct: 567 HGQLEEAMSLINSM-PCEPDKAVWGALLGACKVHNNVE 603
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 165/357 (46%), Gaps = 51/357 (14%)
Query: 76 LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD--IVYAREVFDGMPTKMSVSWN 133
+ +RE+ A Q+ + D+ N ++ Y SCG + AR +FD MP VSWN
Sbjct: 99 VKRREMLKA--RQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWN 156
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
+ML GYAK G M+ A ++F MPERNVVSW+A++ GY+ G ++A+ F+ M S A
Sbjct: 157 TMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDS-A 215
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253
+ LVS L L ++ R++L+Y + G + +LI Y + G EA +F
Sbjct: 216 SLRALVSGLIQNDKL--VEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLF 273
Query: 254 HGVE------KHQSDVLIWNAMIGGLAMHGFVKESLELFTEM----------------QI 291
+ + +V+ WN+MI G + + ELF +M QI
Sbjct: 274 DRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQI 333
Query: 292 VGIT-----------PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMV 340
+ + PD +++ ++S + G + A FK + ++ +V + M+
Sbjct: 334 LDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVS----WNSMI 389
Query: 341 DALSRAGQVTEAYEFICQMPLE---PTASMLGSLLTGCMNHGKLDLAEIVGKKLVEL 394
+ A QM LE P L S+L+ C G +DL ++G ++ +L
Sbjct: 390 SGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACA--GLVDL--VLGTQIHQL 442
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 110/253 (43%), Gaps = 48/253 (18%)
Query: 112 GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV 171
G I ARE+FD +++WN M+ Y K EM ARQ+FE MP R++VSW+ ++ GY+
Sbjct: 71 GRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYI 130
Query: 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
CG E R++ + E VS
Sbjct: 131 SCGGK-----FVERARNMFDQMPETDCVS------------------------------- 154
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
+++ YAK G + +A +F+ E + +V+ WNAM+ G M+G V++++E F M
Sbjct: 155 -WNTMLSGYAKSGTMDKAEELFN--EMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMP- 210
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS---EHYACMVDALSRAGQ 348
D + L+S ++EA G G V K + Y ++ + G
Sbjct: 211 ---KRDSASLRALVSGLIQNDKLVEAERILLQYG--GNVGKGDLVDAYNTLIAGYGQKGM 265
Query: 349 VTEAYEFICQMPL 361
EA + ++PL
Sbjct: 266 AYEARKLFDRIPL 278
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 164/503 (32%), Positives = 251/503 (49%), Gaps = 66/503 (13%)
Query: 2 LSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG--V 59
L+ SA L I+++ + + F N++I + ++ ++ +LF + R
Sbjct: 62 LAASAKRPLAIINHARRFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPF 121
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMY----------- 108
+PD T+ L K +H + K G DL+++ +L+ MY
Sbjct: 122 TPDGYTFTALVKGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARK 181
Query: 109 --------------------GSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
CGD+ AR +FD M + V++N+M+DGY K G + +A
Sbjct: 182 VFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKMGCVGLA 241
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYK------------------------------- 177
R++F M ERNVVSW++++ GY GD +
Sbjct: 242 RELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSH 301
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
+AL +F EM+ + NEVT+V VL A A LGALD GR + R+ + K L + + T+LI
Sbjct: 302 DALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALI 361
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
DMYAKCG I +A + F G+ + ++ WNA+I G A++G KE+LE+F M G P+
Sbjct: 362 DMYAKCGEITKAKLAFEGMTERETAS--WNALINGFAVNGCAKEALEVFARMIEEGFGPN 419
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
E+T +G+LSAC H GLV E +F ++ + G+ P+ EHY CMVD L RAG + EA I
Sbjct: 420 EVTMIGVLSACNHCGLVEEGRRWFNAMERFGIAPQVEHYGCMVDLLGRAGCLDEAENLIQ 479
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
MP + +L S L C + AE V K++V++ D G YV L N+YA +RW +
Sbjct: 480 TMPYDANGIILSSFLFACGYFNDVLRAERVLKEVVKMDEDVAGNYVMLRNLYATRQRWTD 539
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
++ M+ RG K S +E
Sbjct: 540 VEDVKQMMKKRGTSKEVACSVIE 562
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 146/431 (33%), Positives = 241/431 (55%), Gaps = 35/431 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN+ S +V S + WN++I Y ++ + ++++ LF KM++ V PD +TY L
Sbjct: 365 GNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLL 423
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
S +L L +H +AK G+ S++ +SN+L+ MY
Sbjct: 424 SMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMY---------------------- 461
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
AKCGEM + +VFE M R++++W+ +I V D L + MR G
Sbjct: 462 ---------AKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEG 512
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ T++S+L C+ L A QG+ + + GL +P+ LI+MY+KCG+++ +
Sbjct: 513 VTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSF 572
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF ++ DV+ W A+I M+G K+++ F EM+ GI PD + F+ ++ AC+H
Sbjct: 573 QVFKLMK--TKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSH 630
Query: 311 GGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E +F + K + P+ EHYAC+VD LSR+ + +A +FI MPL+P +S+ G
Sbjct: 631 SGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWG 690
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL+ C G ++AE V ++++EL PD G YV +SN+YA +WD+ R+ R++++ RG
Sbjct: 691 ALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARG 750
Query: 430 VKKYPGWSFVE 440
+KK PG S++E
Sbjct: 751 LKKDPGCSWME 761
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 99/378 (26%), Positives = 181/378 (47%), Gaps = 38/378 (10%)
Query: 23 LSNP--RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE 80
L++P ++ WN++IR + + ++++SL+ + R + PD T+P + A L E
Sbjct: 73 LASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFE 132
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
+A ++H ++ G+ SDL+I N+LI MY D+ AR+VF+ MP + VSWNS++ GY
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 192
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
+GY + EAL I+ R++G + T+ S
Sbjct: 193 A--------------------------NGY-----WNEALEIYYRFRNLGVVPDSYTMSS 221
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
VL AC LG++++G ++ + G+ + + L+ MY K + + +F +
Sbjct: 222 VLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLR- 280
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320
D + WN MI G + G +ES++LF EM + PD +T +L AC H G + Y
Sbjct: 281 -DAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYV 338
Query: 321 FKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
+ G + +++ ++ G + + E M + + S S++ + +G
Sbjct: 339 HDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSW-NSMINVYIQNGS 397
Query: 381 LDLAEIVGKKL-VELQPD 397
D A + K + +++PD
Sbjct: 398 FDEAMKLFKMMKTDVKPD 415
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/369 (27%), Positives = 169/369 (45%), Gaps = 46/369 (12%)
Query: 2 LSFSALSYLGN--IDYSC---------KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISL 50
+ F + Y+GN ID C KV + + WN++I GY+ + N+++ +
Sbjct: 144 MGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEI 203
Query: 51 FVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGS 110
+ + GV PD T + +A G L E +H I K G + D+ ++N L+ MY
Sbjct: 204 YYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCK 263
Query: 111 CGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGY 170
++ R +FD M + +VSWN+M+ GY++ G
Sbjct: 264 FNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGL-------------------------- 297
Query: 171 VKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTL 230
Y+E++ +F EM + K + +T+ S+L AC HLG L+ G+ + YMI G
Sbjct: 298 -----YEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDT 351
Query: 231 PLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ 290
LI+MYAKCG + + VF G++ D + WN+MI +G E+++LF M+
Sbjct: 352 TASNILINMYAKCGNLLASQEVFSGMK--CKDSVSWNSMINVYIQNGSFDEAMKLFKMMK 409
Query: 291 IVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVT 350
+ PD +T++ LLS G + L K G +VD ++ G++
Sbjct: 410 -TDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMG 468
Query: 351 EAYEFICQM 359
++ + M
Sbjct: 469 DSLKVFENM 477
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 3/180 (1%)
Query: 139 YAKCGEMNMARQVFELM-PERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
YA + + VF L P NV W+++I G + EAL ++ E + + + + T
Sbjct: 58 YAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYT 117
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
SV+ ACA L + + + ++D G L + +LIDMY + + +A VF E
Sbjct: 118 FPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFE--E 175
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
DV+ WN++I G +G+ E+LE++ + +G+ PD T +L AC G V E
Sbjct: 176 MPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG 235
>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 688
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 141/414 (34%), Positives = 227/414 (54%), Gaps = 6/414 (1%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN++I GY +++ SLF +L+ G+ PD T + +A H+
Sbjct: 237 WNSMISGYVDGSLFDEAYSLFRDLLKEGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAI 296
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
G +S+ + +L+ MY C DIV A+ FDG+ + +WN+++ GYA+C + R+
Sbjct: 297 VRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGVSERDLPTWNALISGYARCNQAEKIRE 356
Query: 151 VFELMP----ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
+ + M E NV +W+ +I GYV+ Y A+ +F EM+ + + T+ +L AC+
Sbjct: 357 LHQKMRRDGFEPNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACS 416
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
L + +G+ + Y I G + + +L+DMYAKCG +K V++ + +++
Sbjct: 417 RLATIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKCGDVKHCYRVYNMIS--NPNLVSH 474
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
NAM+ AMHG +E + LF M + PD +TFL +LS+C H G + +
Sbjct: 475 NAMLTAYAMHGHGEEGIALFRRMLASKVRPDHVTFLAVLSSCVHAGSLEIGHECLALMVA 534
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
++P +HY CMVD LSRAGQ+ EAYE I +P E A +LL GC H ++DL EI
Sbjct: 535 YNVMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEADAVTWNALLGGCFIHNEVDLGEI 594
Query: 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+KL+EL+P++ G YV L+N+YA +W TR+ M+ G++K PG S++E
Sbjct: 595 AAEKLIELEPNNPGNYVMLANLYASAGKWHYLTQTRQLMKDMGMQKRPGCSWIE 648
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 103/430 (23%), Positives = 183/430 (42%), Gaps = 64/430 (14%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP--DHLTYPFL 69
+ + +C V + + W ++R Y + ++ LF ++L GV D +P +
Sbjct: 98 SFENACHVFDTMPLRNLHSWTALLRVYIEMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVV 157
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
K L EL +H K GD+ A E+F K +
Sbjct: 158 LKICCGLCAVELGRQMHGMALKHD------------------GDMKSAFEMFSRFSRKSA 199
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNV----VSWSALIDGYVKCGDYKEALVIFEE 185
S+N+M+ GY + G + A+++F+ M + V +SW+++I GYV + EA +F +
Sbjct: 200 ASYNAMIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRD 259
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
+ G + + TL SVL CA + ++ +G+ I +GL + +L++MY+KC
Sbjct: 260 LLKEGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQD 319
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLA------------------------------M 275
I A + F GV + D+ WNA+I G A +
Sbjct: 320 IVAAQMAFDGVS--ERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWNGII 377
Query: 276 HGFVKE-----SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
G+V+ +++LFTEMQI + PD T +L+AC+ + + G
Sbjct: 378 AGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQVHAYSIRAGHD 437
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKK 390
A +VD ++ G V Y + M P ++LT HG + + ++
Sbjct: 438 SDVHIGAALVDMYAKCGDVKHCYR-VYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRR 496
Query: 391 LV--ELQPDH 398
++ +++PDH
Sbjct: 497 MLASKVRPDH 506
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 32/254 (12%)
Query: 26 PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAV 85
P ++ WN +I GY ++K + ++ LF +M A + PD T + A RLA + V
Sbjct: 368 PNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQV 427
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
HA + G++SD+ I +L+ MY CGD+ + V++ + VS N+ML YA G
Sbjct: 428 HAYSIRAGHDSDVHIGAALVDMYAKCGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHG 487
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
+E + +F M + + VT ++VL +C
Sbjct: 488 -------------------------------EEGIALFRRMLASKVRPDHVTFLAVLSSC 516
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
H G+L+ G L M+ + +L T ++D+ ++ G + EA + + ++D +
Sbjct: 517 VHAGSLEIGHECLALMVAYNVMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPT-EADAVT 575
Query: 266 WNAMIGGLAMHGFV 279
WNA++GG +H V
Sbjct: 576 WNALLGGCFIHNEV 589
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 123/284 (43%), Gaps = 37/284 (13%)
Query: 61 PDHLTYPFLAKASGRLA---------KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSC 111
P L++P ++S A L + H + T Y S L S I
Sbjct: 12 PPLLSHPPRTRSSSNRASLSLLPSNLNPHLTLLYHEPPSSTTYASILDSCGSPI-----L 66
Query: 112 GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV 171
G ++A + G V+ +L YA+ A VF+ MP RN+ SW+AL+ Y+
Sbjct: 67 GKQLHAHSIKSGFNAHEFVT-TKLLQMYARNCSFENACHVFDTMPLRNLHSWTALLRVYI 125
Query: 172 KCGDYKEALVIFEEM--RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229
+ G ++EA +FE++ V + + VL C L A++ GR M G++L
Sbjct: 126 EMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVELGRQM------HGMALK 179
Query: 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289
G +K A +F + + +NAMI G +G + ++ ELF M
Sbjct: 180 ------------HDGDMKSAFEMFSRFSRKSAAS--YNAMIAGYWENGNLFKAKELFDRM 225
Query: 290 QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS 333
+ G+ D I++ ++S G L EA+ F+ L K G+ P S
Sbjct: 226 EQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDLLKEGIEPDS 269
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 28/196 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + +V + +SNP + N ++ Y+ + + I+LF +ML + V PDH+T FLA
Sbjct: 454 GDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRRMLASKVRPDHVT--FLA 511
Query: 71 KASGRLAKRELAVAVHAQIAKTGYE-----------SDLFISNSLIHMYGSCGDIVYARE 119
L+ VHA + G+E L ++ + G + A E
Sbjct: 512 V---------LSSCVHAGSLEIGHECLALMVAYNVMPSLKHYTCMVDLLSRAGQLYEAYE 562
Query: 120 VFDGMPTKM-SVSWNSMLDGYAKCGEMNM----ARQVFELMPERNVVSWSALIDGYVKCG 174
+ +PT+ +V+WN++L G E+++ A ++ EL P N ++ L + Y G
Sbjct: 563 LIKNLPTEADAVTWNALLGGCFIHNEVDLGEIAAEKLIELEPN-NPGNYVMLANLYASAG 621
Query: 175 DYKEALVIFEEMRDVG 190
+ + M+D+G
Sbjct: 622 KWHYLTQTRQLMKDMG 637
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 218/327 (66%), Gaps = 8/327 (2%)
Query: 116 YAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGD 175
Y++E+ G+ +SV+ N++LD Y KC ++ A++VF + E++V+SW++++ G K G
Sbjct: 36 YSKEL--GLDENLSVN-NAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGY 92
Query: 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQT 234
++E+L +F +M+ + +E+TLV VL ACA GALDQG+ + +IDK ++ L L+T
Sbjct: 93 FQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKY-IHLLIDKFEINCDLVLET 151
Query: 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
+L+DMYAKCG+I AL VF + +V WNAMIGGLAMHG ++++ LF +M+ +
Sbjct: 152 ALVDMYAKCGSIDLALQVFRRMRVR--NVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKL 209
Query: 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAY 353
PD++TF+ LL AC+H GLV E F+++ + + P+ EHY C+VD L RA +V +A
Sbjct: 210 MPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDAL 269
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413
FI MP++ + + +LL C + G DLAE + ++++EL+PD GRYV LSN+YA
Sbjct: 270 AFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVS 329
Query: 414 RWDEARTTREAMETRGVKKYPGWSFVE 440
+WD A R+ M+ +G++K PG S++E
Sbjct: 330 QWDHALKLRKQMKNKGIEKTPGCSWIE 356
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 8/240 (3%)
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ +EVT+VS++ ACA LG L++G+++ Y + GL L + +++DMY KC I+ A
Sbjct: 8 RPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQE 67
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF+ + + DVL W +M+ GLA G+ +ESL LF +MQ+ I PDEIT +G+LSACA
Sbjct: 68 VFNRIR--EKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQT 125
Query: 312 GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT---ASML 368
G + + Y + K + +VD ++ G + A + +M + +M+
Sbjct: 126 GALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMI 185
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G L HG+ ++ + +L PD D ++ L + DE +AM+ +
Sbjct: 186 GGL--AMHGHGEDAISLFDQMEXDKLMPD-DVTFIALLCACSHAGLVDEGLAMFQAMKNK 242
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 115/262 (43%), Gaps = 33/262 (12%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
+I+ + +V + + + W +++ G +KS +S++LF KM + PD +T +
Sbjct: 61 DIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLS 120
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A + + +H I K DL + +L+ MY CG I A +VF M + +
Sbjct: 121 ACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFT 180
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
WN+M+ G A G ++A+ +F++M
Sbjct: 181 WNAMIGGLAMHGH-------------------------------GEDAISLFDQMEXDKL 209
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEAL 250
++VT +++LCAC+H G +D+G M + M +K + + ++D+ + + +AL
Sbjct: 210 MPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDAL 269
Query: 251 IVFHGVEKHQSDVLIWNAMIGG 272
+ + VL W ++G
Sbjct: 270 AFIENMPIKANSVL-WATLLGA 290
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 19/192 (9%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+ID + +V + +F WN +I G + + +ISLF +M + PD +T+ L
Sbjct: 161 GSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALL 220
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV-YAREVFDG------ 123
A + +A+ Q K ++ I + H YG D++ AR+V D
Sbjct: 221 CACSHAGLVDEGLAMF-QAMKNKFQ----IEPRMEH-YGCVVDLLCRARKVDDALAFIEN 274
Query: 124 MPTKM-SVSWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKE 178
MP K SV W ++L G ++A R+V EL P+ + + L + Y +
Sbjct: 275 MPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPD-SCGRYVMLSNLYAGVSQWDH 333
Query: 179 ALVIFEEMRDVG 190
AL + ++M++ G
Sbjct: 334 ALKLRKQMKNKG 345
>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
Length = 864
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 150/437 (34%), Positives = 245/437 (56%), Gaps = 34/437 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A S G ++ + +V + + WNT+I Y++++ ++++ +F++M G
Sbjct: 96 NAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEF 155
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T + A G +H KT + +L++ +L
Sbjct: 156 TISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTAL-------------------- 195
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
LD YAKCG + A QVFE M +++ V+WS+++ GYV+ +Y+EAL+++
Sbjct: 196 -----------LDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYR 244
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+ + + N+ TL SV+CAC++L AL +G+ M + G + + +S +DMYAKCG
Sbjct: 245 RAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCG 304
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+++E+ I+F V+ + ++ +WN +I G A H KE + LF +MQ G+ P+E+TF L
Sbjct: 305 SLRESYIIFSEVQ--EKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSL 362
Query: 305 LSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LS C H GLV E FFK + G+ P HY+CMVD L RAG ++EAYE I +P +P
Sbjct: 363 LSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDP 422
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
TAS+ GSLL C + L+LAE+ +KL EL+P++ G +V LSN+YA K+W+E +R+
Sbjct: 423 TASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRK 482
Query: 424 AMETRGVKKYPGWSFVE 440
+ VKK G S+++
Sbjct: 483 LLRDCDVKKVRGKSWID 499
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 146/410 (35%), Positives = 233/410 (56%), Gaps = 33/410 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I GYS+S +++ L+V+M + G++ D TY + A + VH +
Sbjct: 393 WNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVL 452
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G DL + +SV+ N++ D Y+KCG + R+
Sbjct: 453 KCGL--DLMV---------------------------VSVN-NAIADAYSKCGFLEDVRK 482
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
VF+ M ER++VSW+ L+ Y + +EAL F MR+ G N+ T SVL +CA L
Sbjct: 483 VFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCF 542
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L+ GR + + GL ++++LIDMYAKCG+I EA VF + D++ W A+I
Sbjct: 543 LEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS--NPDIVSWTAII 600
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGM 329
G A HG V+++L+LF M++ GI + +T L +L AC+HGG+V E ++F+ + G+
Sbjct: 601 SGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGV 660
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
VP+ EHYAC++D L R G++ +A EFI +MP+EP + +LL GC HG ++L EI +
Sbjct: 661 VPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAAR 720
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
K++ ++P++ YV LSN Y +++ + R M+ +GVKK PG+S++
Sbjct: 721 KILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWI 770
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 136/294 (46%), Gaps = 31/294 (10%)
Query: 16 SCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGR 75
+C V + +F W +I G ++ F +ML +G+ PD Y + ++
Sbjct: 174 ACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIG 233
Query: 76 LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSM 135
L EL VHAQI G+ + +F+S S+
Sbjct: 234 LDSLELGKMVHAQIVMRGFATHIFVST-------------------------------SL 262
Query: 136 LDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE 195
L+ YAK G + + VF +M E N VSW+A+I G G + EA +F M++ N
Sbjct: 263 LNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNM 322
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
TLVSV A L ++ G+ + + G+ + + T+LIDMY+KCG++ +A VF
Sbjct: 323 YTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDT 382
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ WNAMI G + G +E+LEL+ +M GIT D T+ + +A A
Sbjct: 383 NFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIA 436
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 133/293 (45%), Gaps = 35/293 (11%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A S G ++ KV + I W T++ YS+S ++++ F M G +P+ T
Sbjct: 470 AYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFT 529
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ + + L E VH + K G +++ I ++LI MY CG I A +VFD +
Sbjct: 530 FSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS 589
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
VSW +++ GYA+ G + ++AL +F
Sbjct: 590 NPDIVSWTAIISGYAQHGLV-------------------------------EDALQLFRR 618
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCG 244
M G KAN VTL+ VL AC+H G +++G + M D G+ + +ID+ + G
Sbjct: 619 MELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVG 678
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
+ +A+ + ++ ++W ++GG +HG V+ L +I+ I P+
Sbjct: 679 RLDDAMEFIRKMPMEPNE-MVWQTLLGGCRVHGNVE--LGEIAARKILSIRPE 728
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 99/178 (55%), Gaps = 2/178 (1%)
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
V +N Y+KC E A VF+ MP+RNV SW+ +I G + G + + F EM +
Sbjct: 156 VLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNS 215
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G ++ +++ +C L +L+ G+M+ ++ +G + + + TSL++MYAK G+I+++
Sbjct: 216 GILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDS 275
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
VF+ + +H + WNAMI G +G E+ +LF M+ TP+ T + + A
Sbjct: 276 YWVFNMMTEHNQ--VSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKA 331
>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 237/431 (54%), Gaps = 34/431 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D S +V ++ W+ +I GY++S + +K++ LF +M AG++P T +
Sbjct: 261 GSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVL 320
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A E VH + K G+ES L+I +L+ MY
Sbjct: 321 NACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMY---------------------- 358
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
AK G AR+ F + + ++V W+++I GYV+ G+ ++AL ++ M+ G
Sbjct: 359 ---------AKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEG 409
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
NE+T+ SVL AC++L A DQGR + I GL L + + ++L MYAKCG ++E
Sbjct: 410 ILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGN 469
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
IVF + + D++ WNAMI GL+ +G+ KE+LELF EM+ PD++TF+ +LSAC+H
Sbjct: 470 IVFRRMP--ERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSH 527
Query: 311 GGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV W +F+ + + G++PK EHYACMVD LSRAG++ EA EFI ++ +
Sbjct: 528 MGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFIESTTIDHGLCLWR 587
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
LL C N+ +L G+KL+EL YV LS +Y R ++ R M+ RG
Sbjct: 588 ILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIYTALGRPEDVERVRSMMKVRG 647
Query: 430 VKKYPGWSFVE 440
V K PG S++E
Sbjct: 648 VSKEPGCSWIE 658
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 166/371 (44%), Gaps = 40/371 (10%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKS---ISLFVKMLRAGVSPDHLTYPFLAKASGR 75
V + N + WN +I GYS+ + P S + LF +M + P+ T+ + A+
Sbjct: 65 VFDRIHNKDVISWNCLINGYSQ-QGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASN 123
Query: 76 LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSM 135
L+ HA K D+F+ +SL++MY G + AREVFD MP + V+W +M
Sbjct: 124 LSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATM 183
Query: 136 LDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE 195
+ GYA +A + FE +FE MR NE
Sbjct: 184 ISGYAI---QRLAGEAFE----------------------------VFELMRREEEDVNE 212
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
SVL A A +D G+ + + GL + L + +L+ MYAKCG++ ++L VF
Sbjct: 213 FAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEM 272
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315
S + W+AMI G A G ++L+LF+ M GI P E T +G+L+AC+ V
Sbjct: 273 SNDKNS--ITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVE 330
Query: 316 EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA---YEFICQMPLEPTASMLGSLL 372
E L K G + +VD +++G +A + ++ Q L SM+ +
Sbjct: 331 EGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYV 390
Query: 373 TGCMNHGKLDL 383
N L L
Sbjct: 391 QNGENEDALSL 401
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 140/280 (50%), Gaps = 33/280 (11%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W T+I GY+ + ++ +F M R + + + A + +H
Sbjct: 180 WATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAV 239
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
KTG L I N+L+ MY AKCG ++ + Q
Sbjct: 240 KTGLLVFLSILNALVTMY-------------------------------AKCGSLDDSLQ 268
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
VFE+ ++N ++WSA+I GY + GD +AL +F M G +E TLV VL AC+ A
Sbjct: 269 VFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACA 328
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
+++G+ + Y++ G L + T+L+DMYAK G ++A F+ ++ Q D+++W +MI
Sbjct: 329 VEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQ--QPDLVLWTSMI 386
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
G +G +++L L+ MQ+ GI P+E+T +L AC++
Sbjct: 387 AGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSN 426
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 146/410 (35%), Positives = 233/410 (56%), Gaps = 33/410 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I GYS+S +++ L+V+M + G++ D TY + A + VH +
Sbjct: 339 WNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVL 398
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G DL + +SV+ N++ D Y+KCG + R+
Sbjct: 399 KCGL--DLMV---------------------------VSVN-NAIADAYSKCGFLEDVRK 428
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
VF+ M ER++VSW+ L+ Y + +EAL F MR+ G N+ T SVL +CA L
Sbjct: 429 VFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCF 488
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L+ GR + + GL ++++LIDMYAKCG+I EA VF + D++ W A+I
Sbjct: 489 LEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS--NPDIVSWTAII 546
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGM 329
G A HG V+++L+LF M++ GI + +T L +L AC+HGG+V E ++F+ + G+
Sbjct: 547 SGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGV 606
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
VP+ EHYAC++D L R G++ +A EFI +MP+EP + +LL GC HG ++L EI +
Sbjct: 607 VPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAAR 666
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
K++ ++P++ YV LSN Y +++ + R M+ +GVKK PG+S++
Sbjct: 667 KILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWI 716
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 136/294 (46%), Gaps = 31/294 (10%)
Query: 16 SCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGR 75
+C V + +F W +I G ++ F +ML +G+ PD Y + ++
Sbjct: 120 ACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIG 179
Query: 76 LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSM 135
L EL VHAQI G+ + +F+S S+
Sbjct: 180 LDSLELGKMVHAQIVMRGFATHIFVST-------------------------------SL 208
Query: 136 LDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE 195
L+ YAK G + + VF +M E N VSW+A+I G G + EA +F M++ N
Sbjct: 209 LNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNM 268
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
TLVSV A L ++ G+ + + G+ + + T+LIDMY+KCG++ +A VF
Sbjct: 269 YTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDT 328
Query: 256 VEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ WNAMI G + G +E+LEL+ +M GIT D T+ + +A A
Sbjct: 329 NFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIA 382
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 133/293 (45%), Gaps = 35/293 (11%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A S G ++ KV + I W T++ YS+S ++++ F M G +P+ T
Sbjct: 416 AYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFT 475
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ + + L E VH + K G +++ I ++LI MY CG I A +VFD +
Sbjct: 476 FSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS 535
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
VSW +++ GYA+ G + ++AL +F
Sbjct: 536 NPDIVSWTAIISGYAQHGLV-------------------------------EDALQLFRR 564
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCG 244
M G KAN VTL+ VL AC+H G +++G + M D G+ + +ID+ + G
Sbjct: 565 MELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVG 624
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
+ +A+ + ++ ++W ++GG +HG V+ L +I+ I P+
Sbjct: 625 RLDDAMEFIRKMPMEPNE-MVWQTLLGGCRVHGNVE--LGEIAARKILSIRPE 674
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 99/178 (55%), Gaps = 2/178 (1%)
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
V +N Y+KC E A VF+ MP+RNV SW+ +I G + G + + F EM +
Sbjct: 102 VLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNS 161
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G ++ +++ +C L +L+ G+M+ ++ +G + + + TSL++MYAK G+I+++
Sbjct: 162 GILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDS 221
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
VF+ + +H + WNAMI G +G E+ +LF M+ TP+ T + + A
Sbjct: 222 YWVFNMMTEHNQ--VSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKA 277
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 147/414 (35%), Positives = 234/414 (56%), Gaps = 11/414 (2%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ WNT+I GY++ + +++ LF + SP + + A SG + +
Sbjct: 232 VISWNTMISGYAQVGDLSQAKRLFNE------SPIRDVFTWTAMVSG-YVQNGMVDEARK 284
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
+ ++++ N+++ Y +V A E+F+ MP + SWN+M+ GY + G +
Sbjct: 285 YFDEMPVKNEISY-NAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQ 343
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
AR++F++MP+R+ VSW+A+I GY + G Y+EAL +F EM+ G +N T L CA
Sbjct: 344 ARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCAD 403
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
+ AL+ G+ + ++ G + +L+ MY KCG+ EA VF G+E + DV+ WN
Sbjct: 404 IAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIE--EKDVVSWN 461
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327
MI G A HGF +++L LF M+ G+ PDEIT +G+LSAC+H GL+ +F S+ +
Sbjct: 462 TMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRD 521
Query: 328 GMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
V P S+HY CM+D L RAG++ EA + MP +P A+ G+LL HG +L E
Sbjct: 522 YNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEK 581
Query: 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ + +++P + G YV LSN+YA RW + R M GV+K G+S+VE
Sbjct: 582 AAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVE 635
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 130/269 (48%), Gaps = 35/269 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I + K+ + W +I GY+++ + +++++FV+M R G S + T+
Sbjct: 339 GGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCAL 398
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+A EL VH Q+ K G+E+ F+ N+L+ MY CG A +VF+G+ K V
Sbjct: 399 STCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVV 458
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+M+ GYA+ G RQ ALV+FE M+ G
Sbjct: 459 SWNTMIAGYARHG---FGRQ----------------------------ALVLFESMKKAG 487
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL--TLPLQTSLIDMYAKCGAIKE 248
K +E+T+V VL AC+H G +D+G Y +D+ ++ T T +ID+ + G ++E
Sbjct: 488 VKPDEITMVGVLSACSHSGLIDRGTEYF-YSMDRDYNVKPTSKHYTCMIDLLGRAGRLEE 546
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
A + + W A++G +HG
Sbjct: 547 AENLMRNM-PFDPGAASWGALLGASRIHG 574
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 174/365 (47%), Gaps = 33/365 (9%)
Query: 23 LSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYPFLAKASGRLAKREL 81
+P I WN I + ++ + + ++ +F M R+ VS + + +L R AK L
Sbjct: 41 FKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYL-----RNAKFSL 95
Query: 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
A + ++ E DLF N ++ Y + A ++FD MP K VSWN+ML GYA+
Sbjct: 96 ARDLFDKMP----ERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQ 151
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
G ++ AR+VF MP RN +SW+ L+ YV G KEA +FE S++N L+S
Sbjct: 152 NGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFE------SQSN-WELISW 204
Query: 202 LCACAHLGALDQGRMM--LRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259
C +G + M+ R + D+ + ++I YA+ G + +A +F+ E
Sbjct: 205 NCL---MGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFN--ESP 259
Query: 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319
DV W AM+ G +G V E+ + F EM + +EI++ +L+ ++ A
Sbjct: 260 IRDVFTWTAMVSGYVQNGMVDEARKYFDEMPV----KNEISYNAMLAGYVQYKKMVIAGE 315
Query: 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
F+++ R + + M+ + G + +A + MP S ++++G +G
Sbjct: 316 LFEAMPCRNI----SSWNTMITGYGQNGGIAQARKLFDMMPQRDCVS-WAAIISGYAQNG 370
Query: 380 KLDLA 384
+ A
Sbjct: 371 HYEEA 375
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 146/293 (49%), Gaps = 20/293 (6%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYPFLAKASGRL 76
K+ + + WN ++ GY+++ +++ +F KM R +S + L ++ +
Sbjct: 129 KLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKE 188
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
A+R +++ +E L N L+ Y + AR++FD MP + +SWN+M+
Sbjct: 189 ARRLFE-------SQSNWE--LISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMI 239
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
GYA+ G+++ A+++F P R+V +W+A++ GYV+ G EA F+EM NE+
Sbjct: 240 SGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM----PVKNEI 295
Query: 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256
+ ++L + + M + +S ++I Y + G I +A +F +
Sbjct: 296 SYNAMLAGYVQYKKMVIAGELFEAMPCRNIS----SWNTMITGYGQNGGIAQARKLFDMM 351
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
Q D + W A+I G A +G +E+L +F EM+ G + + TF LS CA
Sbjct: 352 P--QRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCA 402
>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 147/439 (33%), Positives = 240/439 (54%), Gaps = 37/439 (8%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A Y NI+ + KV L + +F WNT+I+GY+ ++++++ M +GV+ + T
Sbjct: 50 AQCYESNIEDARKVFDCLPDRDVFVWNTIIQGYANLGPFMEALNIYEYMRCSGVAANRYT 109
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+PF+ KA G + + A+H + K G + DLF+ N+L+ Y
Sbjct: 110 FPFVLKACGAMKDGKKGQAIHGHVVKHGLDLDLFVGNALVAFY----------------- 152
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
AKC E+ +R+VF+++ E+++V+W+++I GY G +ALV+F
Sbjct: 153 --------------AKCNEIGASRRVFDMISEKDIVTWNSMISGYAINGCADDALVLFHN 198
Query: 186 MRDVGSKA----NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
M V + TLV++L ACA A+ +G + Y+I G+ L L + LI MYA
Sbjct: 199 MLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGIELDAALGSGLIAMYA 258
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
CG + A VF ++ ++++WNA+I MHG E+L++F+ + G+ PD + F
Sbjct: 259 NCGLLNSARDVFDRID--DKNIVVWNAIIRCYGMHGHADEALKMFSGLIDSGLHPDGVIF 316
Query: 302 LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
L LLSA +H G+V E F+ +G G+ SEHYA +VD L RAG + EA EF+ MP+
Sbjct: 317 LCLLSAFSHAGMVAEGMELFEKMGDYGVEKSSEHYASVVDILGRAGFLHEAVEFVKNMPV 376
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
+P + G+LL C H ++LAE + +KL L PD+ GRY+ L +Y +W+ A
Sbjct: 377 QPGKDVYGALLGACRIHNNIELAEEIAEKLFVLDPDNAGRYIILVKMYEDAGKWENAARL 436
Query: 422 REAMETRGVKKYPGWSFVE 440
R+A++ + ++K G S +E
Sbjct: 437 RKALKEKNIRKPLGCSAIE 455
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 118/252 (46%), Gaps = 39/252 (15%)
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSC--GDIVYAREVFDGMPTKMSVSWNSMLDGYAK 141
++HAQI G+E + F+ L+ Y C +I AR+VFD +P + WN+++ GYA
Sbjct: 25 SIHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDARKVFDCLPDRDVFVWNTIIQGYAN 84
Query: 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
G + EAL I+E MR G AN T V
Sbjct: 85 LGP-------------------------------FMEALNIYEYMRCSGVAANRYTFPFV 113
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
L AC + +G+ + +++ GL L L + +L+ YAKC I + VF + +
Sbjct: 114 LKACGAMKDGKKGQAIHGHVVKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMIS--EK 171
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEM-QIVGIT---PDEITFLGLLSACAHGGLVMEA 317
D++ WN+MI G A++G ++L LF M Q+ G T PD T + +L ACA + E
Sbjct: 172 DIVTWNSMISGYAINGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEG 231
Query: 318 WYFFKSLGKRGM 329
+ + K G+
Sbjct: 232 LWIHSYVIKSGI 243
>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
Length = 679
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/437 (34%), Positives = 239/437 (54%), Gaps = 45/437 (10%)
Query: 9 YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY-- 66
YLG++ KV + I WNTVI G +++ ++ + +M A + PD T
Sbjct: 145 YLGSLR---KVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSS 201
Query: 67 --PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
P A+ L +E +H + GY++D+FI +SLI MY
Sbjct: 202 VLPIFAEYVNLLKGKE----IHGYAIRNGYDADVFIGSSLIDMY---------------- 241
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
AKC ++ + +VF ++P+ + +SW+++I G V+ G + E L F+
Sbjct: 242 ---------------AKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQ 286
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+M K N V+ S++ ACAHL L G+ + Y+I + + ++L+DMYAKCG
Sbjct: 287 QMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCG 346
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
I+ A +F +E + D++ W AMI G A+HG +++ LF M++ G+ P+ + F+ +
Sbjct: 347 NIRTARWIFDKMELY--DMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAV 404
Query: 305 LSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L+AC+H GLV EAW +F S+ + ++P EHYA + D L R G++ EAYEFI M +EP
Sbjct: 405 LTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEP 464
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
T S+ +LL C H ++LAE V KKL + P + G YV LSN+Y+ RW +AR R
Sbjct: 465 TGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRI 524
Query: 424 AMETRGVKKYPGWSFVE 440
AM +G+KK P S++E
Sbjct: 525 AMRDKGMKKKPACSWIE 541
>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g37570
gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 550
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/486 (31%), Positives = 246/486 (50%), Gaps = 67/486 (13%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS-PDHLTYPFLAKASGRLA 77
V + +P + WN +I+GYS +++S+ ++M+R G++ PD T+P + K
Sbjct: 65 VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNG 124
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+ + +VH + + G++ D+ + S + YG C D+ AR+VF MP + +VSW +++
Sbjct: 125 QVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVV 184
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSAL------------------------------- 166
Y K GE+ A+ +F+LMPERN+ SW+AL
Sbjct: 185 AYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSM 244
Query: 167 IDGYVKCGDYKEALVIFEEMRDVGSKA-------------------------------NE 195
IDGY K GD A +FEE R V +A +E
Sbjct: 245 IDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDE 304
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP-LQTSLIDMYAKCGAIKEALIVFH 254
+V ++ AC+ +G + + Y+ + + + +LIDM AKCG + A +F
Sbjct: 305 FIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFE 364
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
E Q D++ + +M+ G+A+HG E++ LF +M GI PDE+ F +L C LV
Sbjct: 365 --EMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLV 422
Query: 315 MEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
E +F+ + K+ ++ +HY+C+V+ LSR G++ EAYE I MP E AS GSLL
Sbjct: 423 EEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLG 482
Query: 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
GC HG ++AE+V + L EL+P G YV LSN+YA RW + R+ M G+ K
Sbjct: 483 GCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKI 542
Query: 434 PGWSFV 439
G S++
Sbjct: 543 CGRSWI 548
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 18/159 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D + K+ + + + +++ G + +++I LF KM+ G+ PD + + +
Sbjct: 354 GHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVIL 413
Query: 71 KASG--RLAKR-----ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
K G RL + EL ++ +A + S ++++ G + A E+
Sbjct: 414 KVCGQSRLVEEGLRYFELMRKKYSILASPDHYS------CIVNLLSRTGKLKEAYELIKS 467
Query: 124 MPTKMSVS-WNSMLDGYAKCGEMNM----ARQVFELMPE 157
MP + S W S+L G + G + AR +FEL P+
Sbjct: 468 MPFEAHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQ 506
>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
Length = 496
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/424 (37%), Positives = 238/424 (56%), Gaps = 13/424 (3%)
Query: 26 PR-IFYWNTVIRGYSKSKNPNKSISLFVKMLR--AGVSPDHLTYPFLAKA-----SGRLA 77
PR + W + I ++ + + + + M+ A +P+ +T + A S LA
Sbjct: 29 PRDVVSWTSTISRAARQGDLHAAAASLCAMVSSPAAPAPNDVTLLTVLSACADSPSSPLA 88
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
LA+ +HA+ K + S L +S L Y + A ++FD MP + V++N+M+
Sbjct: 89 S-PLALTLHARALKL-FPSHLLLSTCLARFYLASRLPHLALQLFDSMPVRSVVTYNTMIS 146
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
G + G ++ A +VF+ MP + VSW+ALIDG+VK G + EA+ F M G + + +T
Sbjct: 147 GLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDGVETDYIT 206
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
LV+V+ ACA +GAL G + R ++ + L + + SLIDMYA+CG + A VF +
Sbjct: 207 LVAVVSACAEVGALGLGMWVHRLVLRQRLERNVRVANSLIDMYARCGQVNLAAQVFRSIR 266
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
K V+ WN+MI G A +G +++ELF EM+ G PD +T G+L+AC+H GL
Sbjct: 267 KRT--VVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHG 324
Query: 318 WYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
++ + G+ + EHY C+VD L RAG++ EA + MP+ P +LG+LL GC
Sbjct: 325 LRYYDLMTTEYGVAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCR 384
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436
HG LD+AE + + L EL P D YV LSN+YA +WD A R M+ RGVKK PG
Sbjct: 385 THGNLDMAEQMMQHLFELDPQGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGVKKRPGH 444
Query: 437 SFVE 440
S VE
Sbjct: 445 STVE 448
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 127/278 (45%), Gaps = 39/278 (14%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S L G +D + +V + P W +I G+ K+ +++I F ML GV D+
Sbjct: 145 ISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDGVETDY 204
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T + A + L + VH + + E ++ ++NSLI MY CG + A +VF
Sbjct: 205 ITLVAVVSACAEVGALGLGMWVHRLVLRQRLERNVRVANSLIDMYARCGQVNLAAQVFRS 264
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+ + VSWNSM+ G+A G +C D A+ +F
Sbjct: 265 IRKRTVVSWNSMIVGFAANG----------------------------RCTD---AIELF 293
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY----MIDKGLSLTLPLQTSLIDM 239
EEMR G K + VTL VL AC+H G + G LRY + G++ + ++D+
Sbjct: 294 EEMRRQGFKPDAVTLTGVLTACSHAGLTEHG---LRYYDLMTTEYGVAARMEHYGCVVDL 350
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
+ G + EA+ V + ++V++ A++ G HG
Sbjct: 351 LGRAGRLDEAMHVVETMPMRPNEVVL-GALLAGCRTHG 387
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 82/188 (43%), Gaps = 7/188 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + +V + + WN++I G++ + +I LF +M R G PD +T +
Sbjct: 253 GQVNLAAQVFRSIRKRTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPDAVTLTGVL 312
Query: 71 KASGRLAKRELAVAVHA-QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A E + + + G + + ++ + G G + A V + MP + +
Sbjct: 313 TACSHAGLTEHGLRYYDLMTTEYGVAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPN 372
Query: 130 -VSWNSMLDGYAKCGEMNMARQ----VFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
V ++L G G ++MA Q +FEL P+ + ++ L + Y G + A +
Sbjct: 373 EVVLGALLAGCRTHGNLDMAEQMMQHLFELDPQGD-ANYVLLSNIYAAVGKWDGAGKVRS 431
Query: 185 EMRDVGSK 192
M+ G K
Sbjct: 432 LMKARGVK 439
>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
Length = 1984
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/433 (36%), Positives = 243/433 (56%), Gaps = 6/433 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + ++ + W+ +I YS+S +++ LF KM++ G P+ +
Sbjct: 264 GDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTL 323
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L + +H + K G + D+FI +SLI +Y CG R VFD + K V
Sbjct: 324 SALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVV 383
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
WNSM+ GY+ G + ++FEL+PE+N VSW +I GY++ ++ L +F + G
Sbjct: 384 CWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSG 443
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
N+ T SVLCACA + +LD+G + +I G+ + + T+L DMYAKCG I +
Sbjct: 444 QTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSK 503
Query: 251 IVFHGV-EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSAC 308
VF + EK++ + W MI GLA GF ESL LF EM+ + P+E+ L +L AC
Sbjct: 504 QVFERMPEKNE---ISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFAC 560
Query: 309 AHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
+H GLV + ++F S+ K G+ PK +HY C+VD LSR+G++ EA EFI +P +P A+
Sbjct: 561 SHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANA 620
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
+LL+GC + +AE KKL +L ++ YV LSN+YA RW + R+ M
Sbjct: 621 WAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMRE 680
Query: 428 RGVKKYPGWSFVE 440
+G+KK G S+VE
Sbjct: 681 KGLKKSGGCSWVE 693
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 165/318 (51%), Gaps = 35/318 (11%)
Query: 25 NP--RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82
NP + W I G+ ++ +++ LF ++L +GV P+ +T+ + +A G L L
Sbjct: 144 NPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLG 203
Query: 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142
+++ + K G+E L +SNSLI + G+I AR VFD M + VSW ++LD Y +
Sbjct: 204 MSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVET 263
Query: 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202
G++ AR++F+ MPERN +SWSA+I Y + G +EAL +F +M G K N L
Sbjct: 264 GDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTL 323
Query: 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
A A L AL G + ++ G+ + + +SLID+Y KCG + +VF + + +
Sbjct: 324 SALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLI--LEKN 381
Query: 263 VLIWNAMIGGLAMHGF-------------------------------VKESLELFTEMQI 291
V+ WN+M+GG +++G ++ LE+F + +
Sbjct: 382 VVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLV 441
Query: 292 VGITPDEITFLGLLSACA 309
G TP++ TF +L ACA
Sbjct: 442 SGQTPNKSTFSSVLCACA 459
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 134/257 (52%), Gaps = 6/257 (2%)
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
QI K SDL +SN +I Y G++V AR +FD MP + VSW++++ G K G +
Sbjct: 77 QIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEE 136
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
+ FE P +NVVSW+A I G+V+ G EAL +F + + G + N+VT SV+ AC
Sbjct: 137 SMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGE 196
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
LG G +L ++ G L + SLI + + G I A VF +EK DV+ W
Sbjct: 197 LGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKR--DVVSWT 254
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327
A++ G ++E+ +F EM +EI++ +++ + G EA F + +
Sbjct: 255 AILDAYVETGDLREARRIFDEMP----ERNEISWSAMIARYSQSGYAEEALKLFSKMVQE 310
Query: 328 GMVPKSEHYACMVDALS 344
G P +AC + AL+
Sbjct: 311 GFKPNISCFACTLSALA 327
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/431 (34%), Positives = 242/431 (56%), Gaps = 35/431 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+++ + ++ + WN++I Y+ ++++LF +MLR G SP+ +T +
Sbjct: 254 GDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVF 313
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ + A I E DL N ++H
Sbjct: 314 SICAKTGDLDTGRRARAWI----REEDL--QNVIVH------------------------ 343
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
++++ Y KC ++ AR F+ MP R+VV+WS +I GY + G E+L +FE M+
Sbjct: 344 --TALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATN 401
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K NEVTLV VL ACA LG+ + G + Y+ + L LT L ++LIDMY KCG + A
Sbjct: 402 CKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARAR 461
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF+ +E Q V+ WN+MI GLA++GF ++++ L+ +M GI P+E+TF+ LL+AC H
Sbjct: 462 SVFNRME--QKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTH 519
Query: 311 GGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV + FF+ + K+ V P+ EH AC+VD L ++G++ EAY+FIC M +EP A +
Sbjct: 520 AGLVDKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWS 579
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL+ C H ++LA++ KLV L+P++ YV LSN+YA W + R R+ M ++
Sbjct: 580 TLLSACRAHADVELAKLAAGKLVALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKN 639
Query: 430 VKKYPGWSFVE 440
++K +S++E
Sbjct: 640 LQKLSAYSWIE 650
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 145/278 (52%), Gaps = 3/278 (1%)
Query: 35 IRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGY 94
+ G SK + I + + R G + P + K+ + A H G
Sbjct: 146 LSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCAQSAASCQGSQTHCHALVRGM 205
Query: 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154
D+F+ +L+ Y GD+ A F MP K + N ++ GY+K G++ AR++F+
Sbjct: 206 LGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDS 265
Query: 155 MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQG 214
MP R SW+++I Y G+++EAL +F++M G+ N +T+ +V CA G LD G
Sbjct: 266 MPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSICAKTGDLDTG 325
Query: 215 RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLA 274
R ++ ++ L + + T+L++MY KC AI EA F + + DV+ W+ MI G +
Sbjct: 326 RRARAWIREEDLQNVI-VHTALMEMYVKCRAIDEARHEFDRMPRR--DVVAWSTMIAGYS 382
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
+G ESLELF M+ P+E+T +G+LSACA G
Sbjct: 383 QNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLG 420
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 133/351 (37%), Gaps = 73/351 (20%)
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
AR +F+++P A + G K ++E + + + G + VL +CA
Sbjct: 127 ARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCAQ 186
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS---DVL 264
A QG + + +G+ + +QT+L+D YAK G + AL+ F + + L
Sbjct: 187 SAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCL 246
Query: 265 I--------------------------WNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
I WN+MI A G +E+L LF +M G +P+
Sbjct: 247 ITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNA 306
Query: 299 ITFLGLLSACAHGG----------------------------------LVMEAWYFFKSL 324
IT + S CA G + EA + F +
Sbjct: 307 ITITTVFSICAKTGDLDTGRRARAWIREEDLQNVIVHTALMEMYVKCRAIDEARHEFDRM 366
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTASMLGSLLTGCMNHGKL 381
+R +V ++ M+ S+ G+ E+ E +M +P L +L+ C G
Sbjct: 367 PRRDVVA----WSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 422
Query: 382 DLAEIVGKKLVELQPDHDGRYVG--LSNVYAIFKRWDEARTTREAMETRGV 430
+L E +G +E Q Y+G L ++Y AR+ ME + V
Sbjct: 423 ELGEQIG-NYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVV 472
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 165/498 (33%), Positives = 251/498 (50%), Gaps = 72/498 (14%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
ID + K+ + + + W T++ GY+++ + +++ L ++M AG PD +T + A
Sbjct: 196 IDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPA 255
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+ + ++H ++G+ES + ++N+L+ MY CG AR VF GM +K VSW
Sbjct: 256 VADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSW 315
Query: 133 NSMLDGYAKCGEMNMARQVFELM------PER---------------------------- 158
N+M+DG A+ GE A F M P R
Sbjct: 316 NTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDK 375
Query: 159 -----NVVSWSALIDGYVKC------------------------------GDYKEALVIF 183
NV ++LI Y KC G KEAL +F
Sbjct: 376 LKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNVTWNAMILGYAQNGCVKEALNLF 435
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
M+ G K + TLV V+ A A Q + + + + + + T+L+DMYAKC
Sbjct: 436 CMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKC 495
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
GAIK A +F +++ V+ WNAMI G HG KE+L+LF EMQ + P++ITFL
Sbjct: 496 GAIKTARKLFDMMQERH--VITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLS 553
Query: 304 LLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
++SAC+H G V E FKS+ + + P +HY+ MVD L RAGQ+ +A+ FI +MP++
Sbjct: 554 VISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIK 613
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P S+LG++L C H ++L E +KL +L PD G +V L+N+YA WD+ R
Sbjct: 614 PGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVR 673
Query: 423 EAMETRGVKKYPGWSFVE 440
AME +G+ K PG S+VE
Sbjct: 674 TAMEDKGLHKTPGCSWVE 691
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 169/375 (45%), Gaps = 36/375 (9%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S G+ + +V H+ ++ +++GY+K+ + ++ F++M+ V
Sbjct: 87 SLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVG 146
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
Y L + G + +H I G+ES+LF+ +++ +Y C I A ++F+ M
Sbjct: 147 DYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERM 206
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
K VSW +++ GYA+ G K AL +
Sbjct: 207 QHKDLVSWTTLVAGYAQNGHA-------------------------------KRALQLVL 235
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+M++ G K + VTLVS+L A A + AL GR + Y G + + +L+DMY KCG
Sbjct: 236 QMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCG 295
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+ + A +VF G+ V+ WN MI G A +G +E+ F +M G P +T +G+
Sbjct: 296 SARIARLVFKGMR--SKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGV 353
Query: 305 LSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA---YEFICQMPL 361
L ACA+ G + W+ K L K + ++ S+ +V A + + + +
Sbjct: 354 LLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNV 413
Query: 362 EPTASMLGSLLTGCM 376
A +LG GC+
Sbjct: 414 TWNAMILGYAQNGCV 428
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/412 (36%), Positives = 227/412 (55%), Gaps = 13/412 (3%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQI 89
WNT+I GY++ + +++ LF + +R + + Y ++ G L + Q
Sbjct: 222 WNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQ--DGMLDEARRVFDEMPQK 279
Query: 90 AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMAR 149
+ Y N +I Y + RE+F+ MP SWN M+ GY + G++ AR
Sbjct: 280 REMSY-------NVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQAR 332
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
+F++MP+R+ VSW+A+I GY + G Y+EA+ + EM+ G N T L ACA +
Sbjct: 333 NLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIA 392
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
AL+ G+ + ++ G + +L+ MY KCG I EA VF GV+ D++ WN M
Sbjct: 393 ALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQ--HKDIVSWNTM 450
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-G 328
+ G A HGF +++L +F M G+ PDEIT +G+LSAC+H GL +F S+ K G
Sbjct: 451 LAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYG 510
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
+ P S+HYACM+D L RAG + EA I MP EP A+ G+LL HG ++L E
Sbjct: 511 ITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAA 570
Query: 389 KKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ + +++P + G YV LSN+YA RW + R M GV+K PG+S+VE
Sbjct: 571 EMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVE 622
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 126/297 (42%), Gaps = 64/297 (21%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLF--------------------- 51
+D ++ + P I WN +I GY ++ + ++ +LF
Sbjct: 297 MDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQN 356
Query: 52 ----------VKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFIS 101
V+M R G S + T+ A +A EL VH Q+ +TGYE +
Sbjct: 357 GLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVG 416
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV 161
N+L+ MY CG I A +VF G+ K VSWN+ML GYA+ G RQ
Sbjct: 417 NALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHG---FGRQ----------- 462
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
AL +FE M G K +E+T+V VL AC+H G D+G M
Sbjct: 463 -----------------ALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSM 505
Query: 222 -IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
D G++ +ID+ + G ++EA + + + D W A++G +HG
Sbjct: 506 NKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNM-PFEPDAATWGALLGASRIHG 561
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 163/380 (42%), Gaps = 38/380 (10%)
Query: 22 HLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKM-LRAGVSPDHLTYPFLAKASGRLAKRE 80
H +P I + ++ + + ++ +F M LR VS + + +L A LA+
Sbjct: 27 HFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDL 86
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
H DLF N ++ Y + AR +FD MP K VSWN+ML GY
Sbjct: 87 FDKMPH---------KDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYV 137
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
+ G ++ AR VF+ MP +N +SW+ L+ YV+ G +EA +FE D L+S
Sbjct: 138 RSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSD-------WELIS 190
Query: 201 VLCACAHLGALDQGRMML---RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
C C G + R ML R + D+ L ++I YA+ G + +A +F E
Sbjct: 191 --CNCLMGGYVK--RNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFE--E 244
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
DV W AM+ G + E+ +F EM E+++ +++ A +
Sbjct: 245 SPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMP----QKREMSYNVMIAGYAQYKRMDMG 300
Query: 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
F+ + P + M+ + G + +A MP + S +++ G
Sbjct: 301 RELFEEMP----FPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVS-WAAIIAGYAQ 355
Query: 378 HGKLDLAEIVGKKLVELQPD 397
+G L E LVE++ D
Sbjct: 356 NG---LYEEAMNMLVEMKRD 372
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 5/185 (2%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ID + V + + I WNT++ GY++ +++++F M+ AGV PD +T +
Sbjct: 427 GCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVL 486
Query: 71 KASGRLAKRELAVA-VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM- 128
A + H+ G + +I + G G + A+ + MP +
Sbjct: 487 SACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPD 546
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFEL---MPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+ +W ++L G M + Q E+ M N + L + Y G + + + +
Sbjct: 547 AATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLK 606
Query: 186 MRDVG 190
MR +G
Sbjct: 607 MRQIG 611
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/441 (34%), Positives = 242/441 (54%), Gaps = 40/441 (9%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
S L +D + KV I+ WN + R + + N + L+ +M GVS D TY
Sbjct: 114 FSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTY 173
Query: 67 PFLAKA----SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122
+L KA ++ + +HA I + GY + + + +L+ MY G + Y
Sbjct: 174 TYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSY------ 227
Query: 123 GMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI 182
A VF+ MP +NVVSWSA+I Y K G EAL +
Sbjct: 228 -------------------------ASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALEL 262
Query: 183 FEEM--RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
F EM S N VT+VSVL ACA AL+QG+++ Y++ +GL LP+ ++LI MY
Sbjct: 263 FREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMY 322
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
A+CG ++ ++F + H+ DV++WN++I +HG+ ++++++F EM G +P I+
Sbjct: 323 ARCGKLESGQLIFDRM--HKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHIS 380
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
F+ +L AC+H GLV E F+S+ K G+ P EHYACMVD L RA ++ EA + I +
Sbjct: 381 FISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDL 440
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
+EP + GSLL C H ++LAE K+L +L+P + G YV L+++YA + WDE +
Sbjct: 441 RIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVK 500
Query: 420 TTREAMETRGVKKYPGWSFVE 440
++ +++R ++K PG S++E
Sbjct: 501 RVKKLLDSRELQKVPGRSWIE 521
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 152/354 (42%), Gaps = 44/354 (12%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK 91
N +I+ K N +++ L L +P T L ++ R A+ VH +
Sbjct: 42 NHLIQSLCKQGNLKQALYL----LSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVD 97
Query: 92 TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQV 151
G++ D F++ LI+M+ S LD ++ AR+V
Sbjct: 98 GGFDQDPFLATKLINMF-------------------------SELD------TVDNARKV 126
Query: 152 FELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH---- 207
F+ +R + W+AL G + L ++ M +G ++ T +L AC
Sbjct: 127 FDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECL 186
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
+ L +G+ + +++ G + + T+L+DMYA+ G + A VF E +V+ W+
Sbjct: 187 VSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFD--EMPVKNVVSWS 244
Query: 268 AMIGGLAMHGFVKESLELFTEMQIV--GITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
AMI A +G E+LELF EM + P+ +T + +L ACA + + +
Sbjct: 245 AMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYIL 304
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+RG+ + ++ +R G++ E+ + I + + SL++ HG
Sbjct: 305 RRGLDSILPVISALITMYARCGKL-ESGQLIFDRMHKKDVVLWNSLISSYGLHG 357
>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Cucumis sativus]
Length = 649
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 253/461 (54%), Gaps = 41/461 (8%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
I+ + ++ + + WNT+I GY++ ++++ LF KM P+ +
Sbjct: 145 IEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKM------PERNVVSWNTVI 198
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+ + +R + A ++ E D+ +++ G I AR +FD MP + VSW
Sbjct: 199 TAFMQRRRVDEA--QELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSW 256
Query: 133 NSMLDGYAKCGEMNMARQVFELMPER-------------------------------NVV 161
N+M+ GYA+ ++ A ++FE MPER NVV
Sbjct: 257 NTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVV 316
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRY 220
+W+A+I G+V+ G +EAL IF EM+ + K NE T VSVL AC+ L AL +G+ + +
Sbjct: 317 TWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQI 376
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+ + ++LI+MY+KCG ++ A +F DV+ WN MI A HG
Sbjct: 377 ISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGH 436
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACM 339
+++ LF EMQ +G PD +T++ LLSAC+H GLV E F++L + R + + +H+ C+
Sbjct: 437 KAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCL 496
Query: 340 VDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399
VD RAG++ EA++FI + ++P+AS+ +LL GC HG +DL ++ +KL+E +P++
Sbjct: 497 VDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKLLETEPENA 556
Query: 400 GRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
G Y+ LSN+YA +W EA R M+ +G+KK PG S++E
Sbjct: 557 GTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIE 597
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/379 (24%), Positives = 173/379 (45%), Gaps = 67/379 (17%)
Query: 16 SCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV----------SPDHLT 65
+C+V+ +S+P +R +S + N +S L ++ + G PD
Sbjct: 46 TCQVVPKISSP--------VRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDV 97
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISN-----SLIHMYGSCGDIVYAREV 120
+ A +G + + + AKT ++ + I N +L+ Y I AR +
Sbjct: 98 VSWTAVITGYIKCGMI------EEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRL 151
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
FD MP K +SWN+M++GYA+ G ++ A +FE MPERNVVSW+ +I +++ EA
Sbjct: 152 FDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQ 211
Query: 181 VIFEEM--RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM----------------- 221
+F M RDV ++ +++ + G +D R++ M
Sbjct: 212 ELFNRMPERDV------ISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQ 265
Query: 222 ---IDKGLSL-------TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIG 271
+D+ L L ++I + + G ++ A+ F+ + +V+ W A+I
Sbjct: 266 NMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMS--NKNVVTWTAVIS 323
Query: 272 GLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330
G G +E+L++F+EMQ + P+E TF+ +L AC+ + E + + K
Sbjct: 324 GHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQ 383
Query: 331 PKSEHYACMVDALSRAGQV 349
++ + +++ S+ G++
Sbjct: 384 EVADVVSALINMYSKCGEL 402
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/353 (22%), Positives = 165/353 (46%), Gaps = 47/353 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+ LS G ID + + + + WNT+I GY+++ +++ LF +M +S +
Sbjct: 230 AGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNT 289
Query: 65 -------------TYPFLAKASGR-LAKRELAVAVHAQIAKTGYESDLFI---------- 100
F K S + + ++ H Q ++ +F
Sbjct: 290 MITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKP 349
Query: 101 -SNSLIHMYGSCGDI-----------VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
+ + + G+C + + ++ V+ + +S ++++ Y+KCGE+ +A
Sbjct: 350 NEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVS----ALINMYSKCGELELA 405
Query: 149 RQVFE--LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
R++F+ + R+VVSW+ +I Y G +A+ +F+EM+ +G + + VT +++L AC+
Sbjct: 406 RKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACS 465
Query: 207 HLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
H G +D+G + ++ D+ + L T L+D++ + G ++EA G+E S +
Sbjct: 466 HAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPS-ASV 524
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI-TFLGLLSACAHGGLVMEA 317
W A++ G +HG + L T +++ P+ T+L L + A G EA
Sbjct: 525 WAALLAGCNVHGHI--DLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREA 575
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 136/292 (46%), Gaps = 55/292 (18%)
Query: 96 SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELM 155
S++ SN LI G G I AR+VF+ MP + VSW +++ GY KCG + A+ +F+
Sbjct: 64 SNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRN 123
Query: 156 PE-RNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGSKANEVTLVSVLCACAHLGALD 212
+NVV+W+AL+ GYV+ +EA +F+ M ++V S
Sbjct: 124 DAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVIS--------------------- 162
Query: 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
++I+ YA+ G I +AL +F + + +V+ WN +I
Sbjct: 163 --------------------WNTMIEGYARKGWIDQALDLFEKMP--ERNVVSWNTVITA 200
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPK 332
V E+ ELF M D I++ +++ + G + +A F + R +V
Sbjct: 201 FMQRRRVDEAQELFNRMP----ERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVS- 255
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
+ M+ ++ ++ EA++ QMP E S +++TG + +GKL+ A
Sbjct: 256 ---WNTMIIGYAQNMRLDEAFKLFEQMP-ERELSSWNTMITGFIQNGKLERA 303
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/423 (34%), Positives = 243/423 (57%), Gaps = 19/423 (4%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGR-------------LAK 78
N ++R ++ P + + F ++ ++PDH ++ FL +A+ +A
Sbjct: 83 NGLLRALARGPCPGLAFAAFREL---PLAPDHYSFTFLVRAATSLAAAASATPVPTDVAV 139
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
LA +VHA + G+ +D + + + MY + GD+ R F + + V +ML
Sbjct: 140 NLLAGSVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGA 199
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
+ G+++ AR++F+ MP+R+ V+W+A++ GYV+ G +EAL +F+EM+ G +EVTL
Sbjct: 200 LSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTL 259
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
VSVL ACA +GAL++G + Y+ +G+ +++ L T+L+DMY+KCG + ++ VF +
Sbjct: 260 VSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMR- 318
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
+ ++ W + + GLAM+G +E LELF M+ G+ P+ +TF+ +L C+ GLV E
Sbjct: 319 -ERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGR 377
Query: 319 YFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
F S+ + V P EHY CMVD RAG++ +A +FI MP+EP + G+LL
Sbjct: 378 ACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRI 437
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
H +DL + KL E++ +D +V LSN+YA W R M+++GVKK PG S
Sbjct: 438 HNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCS 497
Query: 438 FVE 440
+E
Sbjct: 498 AIE 500
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 129/293 (44%), Gaps = 40/293 (13%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
ALS G++D + ++ + WN ++ GY + +++ LF +M +AGV+
Sbjct: 197 LGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSE 256
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T + A ++ E + VH+ + G + + +L+ MY CG + + EVF+
Sbjct: 257 VTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFET 316
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + +W S L G A MN G +E L +F
Sbjct: 317 MRERNIYTWTSALSGLA----MN---------------------------GMGEECLELF 345
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAK 242
+ M G + N VT V+VL C+ G +++GR M DK + L ++D+Y +
Sbjct: 346 KRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGR 405
Query: 243 CGAIKEALIVFHG--VEKHQSDVLIWNAMIGGLAMHGFV---KESLELFTEMQ 290
G + +A+ + VE H+ +W A++ +H V K ++ TE++
Sbjct: 406 AGRLDDAVDFINSMPVEPHEG---VWGALLNASRIHNNVDLGKHAMHKLTEIE 455
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/363 (40%), Positives = 212/363 (58%), Gaps = 14/363 (3%)
Query: 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVYARE--VFDGMPTKMSVS------WNSMLDG 138
+++ ++G+E D F+ LI +CG++ +E F G+ K + S++D
Sbjct: 203 SRMRRSGFELDPFVVEGLIQ---ACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDM 259
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
Y KCG ++ A ++FE + R+VV WSA+I G+ + G E++ +F +M N VT
Sbjct: 260 YMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTF 319
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
S++ AC+ LG+L QGR + YMI G+ L + TS IDMYAKCG I A VF +
Sbjct: 320 ASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIP- 378
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
+ +V W+ MI G MHG E+L LF EM+ V P+ +TF+ +LSAC+H G + E W
Sbjct: 379 -EKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGW 437
Query: 319 YFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377
FKS+ + G+ P EHYACMVD L RAG++ EA FI MP EP AS G+LL C
Sbjct: 438 SHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRI 497
Query: 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
H + +LAE V KKL+ L+ D G YV LSN+YA W+ + TR M +G+ K G++
Sbjct: 498 HRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFT 557
Query: 438 FVE 440
+E
Sbjct: 558 SIE 560
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 173/377 (45%), Gaps = 35/377 (9%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
F A LG++ + K +H++ + WNT++ +SK+K + LF +ML+ G D
Sbjct: 54 FGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDS 113
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
F KA L+ + A H+ K E D +++ +L+++Y
Sbjct: 114 FNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVY--------------- 158
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+ G + A +VFE +P +N V W +I G++ + +F
Sbjct: 159 ----------------TELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELF 202
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG-LSLTLPLQTSLIDMYAK 242
MR G + + + ++ AC ++ A +G+ I K + LQTSL+DMY K
Sbjct: 203 SRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMK 262
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG + AL +F E DV++W+A+I G A +G ES+ +F +M +TP+ +TF
Sbjct: 263 CGFLDFALKLFE--EISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFA 320
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
++ AC+ G + + + + G+ ++Y +D ++ G + AY CQ+P E
Sbjct: 321 SIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIP-E 379
Query: 363 PTASMLGSLLTGCMNHG 379
+++ G HG
Sbjct: 380 KNVFSWSTMINGFGMHG 396
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 33/267 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D++ K+ +S + W+ +I G++++ +SIS+F +ML V+P+ +T+ +
Sbjct: 264 GFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIV 323
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L + +VH + + G E D+ S I MY CG IV A VF +P K
Sbjct: 324 LACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVF 383
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW++M++G+ G C EAL +F EMR V
Sbjct: 384 SWSTMINGFGMHG----------------------------LCA---EALNLFYEMRSVN 412
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
N VT VSVL AC+H G +++G + M D G++ ++D+ + G I EA
Sbjct: 413 QLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEA 472
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMH 276
L + + + W A++G +H
Sbjct: 473 LSFINNMPT-EPGASAWGALLGACRIH 498
>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
Length = 705
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/424 (35%), Positives = 226/424 (53%), Gaps = 11/424 (2%)
Query: 26 PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAV 85
P W +++ +++ + +++ LF KM GV P + LA +
Sbjct: 238 PNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMI 297
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
H + K G+ LF N+LI +YG G + A ++F M K VSWN+++ +A+ G
Sbjct: 298 HGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVY 357
Query: 146 NMARQVF------ELMPER--NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
+ A ++ E PE NV++WSA+I G+ G +E+L +F +M+ KAN VT
Sbjct: 358 DKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVT 417
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+ SVL CA L AL+ GR M ++I + + + LI+MY KCG+ K +VF +E
Sbjct: 418 IASVLSICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLE 477
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
D + WN+MI G HG K++L F M G PD +TF+ LSAC+H GLV E
Sbjct: 478 NR--DSISWNSMIAGYGTHGLGKDALATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEG 535
Query: 318 WYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
+ F + + + P+ EHYACMVD L RAG V EA I MP+EP A + SLL C
Sbjct: 536 HWLFSQMRQNFKIEPEIEHYACMVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLNSCR 595
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436
H DLAE K+ L G ++ LSN++A RW+++ R + +G+KK PGW
Sbjct: 596 MHKDTDLAEEAAAKISNLNSKITGSHMLLSNIFAASCRWEDSARVRISARAKGLKKVPGW 655
Query: 437 SFVE 440
S++E
Sbjct: 656 SWIE 659
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 158/320 (49%), Gaps = 41/320 (12%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN++IR +++ L+ KM GV D T+P L +AS L + +H +
Sbjct: 107 WNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVV 166
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
+ G+++ L + N LI MY + AR+VFD M K VSWN+M+ GYA ++N A +
Sbjct: 167 QFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYNYDVNGASR 226
Query: 151 VFELMP----ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
+F M E N V+W++L+ + +CG +E +V+F +MR G L VL CA
Sbjct: 227 MFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCA 286
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH------------ 254
L L+ G+M+ YM+ G + L + +LI +Y K G + +A +FH
Sbjct: 287 DLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNA 346
Query: 255 -------------------GVEKHQS------DVLIWNAMIGGLAMHGFVKESLELFTEM 289
+EK ++ +V+ W+A+I G A G +ESLE+F +M
Sbjct: 347 LISSFAESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKM 406
Query: 290 QIVGITPDEITFLGLLSACA 309
Q+ + + +T +LS CA
Sbjct: 407 QLANVKANSVTIASVLSICA 426
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 139/287 (48%), Gaps = 20/287 (6%)
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS------ 134
L++ H+Q + Y+ DL + H+ C I ++++V T ++ ++ S
Sbjct: 20 LSINFHSQFSSITYDEDL--PDFFDHLLRQCNGIQHSKQVHSA--TVVTGAYCSAFVSAR 75
Query: 135 MLDGYAKCGEMNMARQVFELMP---ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
++ Y++ G ++ AR+VF P N + W+++I V G EAL ++ +MR+ G
Sbjct: 76 LVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGV 135
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
+ T +L A ++LGA + + + +++ G L + LI MYAK + +A
Sbjct: 136 LGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARK 195
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF + V+ WN M+ G A + V + +F +M++ G+ P+ +T+ LLS+ A
Sbjct: 196 VFDKMRI--KSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARC 253
Query: 312 GLVMEAWYFFKSLGKRGMVPKSEHYA-----CMVDALSRAGQVTEAY 353
G + E F + +G+ P +E A C A +GQ+ Y
Sbjct: 254 GHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGY 300
>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 599
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 159/444 (35%), Positives = 249/444 (56%), Gaps = 15/444 (3%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS 60
+L+F A G + Y+ ++L+H +P +N + S P+ + + ML +
Sbjct: 39 LLAFLARDPAG-VPYAARLLAHHPDPHPALFNPLF----ASLPPHHAAAFLALMLSLPLH 93
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PDH F A LA +HA + K + S N+L+ Y + G A +
Sbjct: 94 PDH----FTLPRLLPAAPLPLAAQLHALLLKLNFHSHAHSFNALLAAYLANGRADLASRL 149
Query: 121 FDGM--PTKMSV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
F P + V SW +M+ G + G ++ AR++F+ MPERN++SW+A+I GYVK G +
Sbjct: 150 FGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFL 209
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
+AL +F++MR +G + N S + AC G L +GR + R++ G+++ L T+++
Sbjct: 210 DALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREVHRWVEQSGITMDEKLATAVV 269
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
DMY KCG+++EA VF + + WN MIGGLA+HG K+++ELF EM+ + PD
Sbjct: 270 DMYCKCGSVEEAWHVFKVLP--TKGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDVAPD 327
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFI 356
++T + +L+ACAH G+V + +F + +R G+ PK EHY CMVD RAG + EA + I
Sbjct: 328 DVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKMEHYGCMVDLFGRAGLLDEAKKVI 387
Query: 357 CQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWD 416
MP+EP +LG+L C H LDL E +G +++EL P + GRYV L+N+ A +W
Sbjct: 388 DDMPMEPDIGVLGALFGACKIHRDLDLGEAIGWRVIELDPQNSGRYVLLANLLASAGQWV 447
Query: 417 EARTTREAMETRGVKKYPGWSFVE 440
+ R M+ R V K G S +E
Sbjct: 448 DVAKVRRLMDERNVSKEAGRSVIE 471
>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 939
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 227/411 (55%), Gaps = 35/411 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN++I GY++S + + F KM++ PD +T+ L +LA +H +
Sbjct: 391 WNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVI 449
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G+E++L I NSL LD YAKCGEM+ +
Sbjct: 450 KFGFEAELIIGNSL-------------------------------LDVYAKCGEMDDLLK 478
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
VF M +++SW+ +I V D + EMR G +E T++ +L C+ L
Sbjct: 479 VFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAV 538
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
QG+ + Y+ G +P+ +LI+MY+KCG+++ + VF ++ + DV+ W A+I
Sbjct: 539 RRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMK--EKDVVTWTALI 596
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GM 329
M+G K++L+ F +M++ G+ PD + F+ + AC+H G+V E FF + +
Sbjct: 597 SAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNL 656
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P+ EHYAC+VD L+R+G + +A EFI MP++P AS+ G+LL+ C G ++A+ V K
Sbjct: 657 EPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSK 716
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
K++EL D G YV +SN+YA +WD+ +T R +M+T+G+KK PG S++E
Sbjct: 717 KILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIE 767
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 154/367 (41%), Gaps = 72/367 (19%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
++D + V +SN WN++I GY + ++ ++ K G+ PD T +
Sbjct: 171 DLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLL 230
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A G L + VAVH I K G D+ I N L+ MY + AR VF M K SV+
Sbjct: 231 ACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVT 290
Query: 132 WNSMLDGYAKCGEMNMARQVFELMP----------------------------------- 156
WN+M+ GYA+ G + ++F M
Sbjct: 291 WNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIG 350
Query: 157 ---ERNVVSWSALIDGYVKCGD-------------------------------YKEALVI 182
E + V+ + LID Y KCGD YKE L
Sbjct: 351 SGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLES 410
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F+ M+ + K + VT V +L + L ++QGR + +I G L + SL+D+YAK
Sbjct: 411 FKMMK-MERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAK 469
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG + + L VF + H D++ WN +I ++ EM+ G+ PDE T L
Sbjct: 470 CGEMDDLLKVFSYMSAH--DIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVL 527
Query: 303 GLLSACA 309
G+L C+
Sbjct: 528 GILPMCS 534
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 149/328 (45%), Gaps = 34/328 (10%)
Query: 27 RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVH 86
++ WN++IR + + +++ + +M + PD T+P + + R+ EL VH
Sbjct: 85 NVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVH 144
Query: 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
+ G+ESDL+I N+LI MY D+ AR VF+ M + SVSWNS
Sbjct: 145 EHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNS------------ 192
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
LI GY G +++AL ++ + R G + T+ SVL AC
Sbjct: 193 -------------------LISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACG 233
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
L A+ +G + + G++ + + L+ MY K ++EA VF + D + W
Sbjct: 234 SLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMA--VKDSVTW 291
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
N MI G A G + S++LF +M I G PD ++ + AC G + + K L
Sbjct: 292 NTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIG 350
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYE 354
G + ++D ++ G + A E
Sbjct: 351 SGFECDTVACNILIDMYAKCGDLLAAQE 378
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 110/268 (41%), Gaps = 33/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D KV S++S I WNTVI + + +M G+ PD T +
Sbjct: 471 GEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGIL 530
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
LA R +H I K+G+ES++ I N+LI MY CG + +VF M K V
Sbjct: 531 PMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVV 590
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W +ALI + G+ K+AL F++M G
Sbjct: 591 TW-------------------------------TALISAFGMYGEGKKALKAFQDMELSG 619
Query: 191 SKANEVTLVSVLCACAHLGALDQG-RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ V ++ + AC+H G + +G R R D L + ++D+ A+ G + +A
Sbjct: 620 VLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQA 679
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
+ + D +W A++ G
Sbjct: 680 EEFILSM-PMKPDASLWGALLSACRARG 706
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 112/228 (49%), Gaps = 7/228 (3%)
Query: 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK---MSVSWN-SMLDGYAKC 142
+ T S F+ +SL+ S + R V + T +SV ++ ++ YA+
Sbjct: 8 SNFNNTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQV 67
Query: 143 GEMNMARQVFE-LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSV 201
+ + VF + P NV W+++I G + +AL + EMR+ + + T SV
Sbjct: 68 KDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSV 127
Query: 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
+ +CA + L+ G ++ + ++ G L + +LIDMY++ + A VF E
Sbjct: 128 INSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFE--EMSNR 185
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
D + WN++I G +GF +++L+++ + ++ G+ PD T +L AC
Sbjct: 186 DSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACG 233
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/436 (34%), Positives = 246/436 (56%), Gaps = 8/436 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPF 68
LG ++ + KV + + WN +I Y +IS+F +M R + + D T
Sbjct: 78 LGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQRMSRESNLKADEGTIVS 137
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A L E+ ++ + T +E + N+L+ M+ CG + AR +FD M K
Sbjct: 138 TLSACSVLKNLEIGERIYRYVV-TEFEMSVRTGNALVDMFCKCGCLDKARAIFDSMRDKN 196
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
W SM+ GY G + AR++FE P ++VV W+A+++GYV+ + EAL +F M+
Sbjct: 197 VKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQT 256
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
+ + LVS+L CA GAL+QG+ + Y+ + +++ + T+L+DMYAKCG I+
Sbjct: 257 ARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKVVGTALVDMYAKCGCIET 316
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
AL VF+ E + D W ++I GLA +G +L+L+ EM+ VG+ D+ITF+ +L+AC
Sbjct: 317 ALGVFY--EMKERDTASWTSLIYGLATNGMSGRALDLYYEMENVGVRLDDITFVAVLTAC 374
Query: 309 AHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
+HGG V E F S+ +R + PKSEHY+C++D L RAG + EA E I +M E ++
Sbjct: 375 SHGGFVAEGRRIFYSMTERHKIQPKSEHYSCLIDLLCRAGLLDEAEELIDKMHGERDKTL 434
Query: 368 LG---SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
+ SLL+ N+G + +AE V +KL +++ + L++VYA RW++ R
Sbjct: 435 VPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRK 494
Query: 425 METRGVKKYPGWSFVE 440
M+ G++K+PG S +E
Sbjct: 495 MKDLGIRKFPGCSSIE 510
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 177/397 (44%), Gaps = 68/397 (17%)
Query: 34 VIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTG 93
+++ ++SK+ K ++LF ++ G+ PD+ T P + K+ GRL K VH KTG
Sbjct: 1 MLKSLAESKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60
Query: 94 YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFE 153
ESD ++ NSL+ MY + G + +VFD MP + VSWN +
Sbjct: 61 LESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGL------------------ 102
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDVGSKANEVTLVSVLCACAHLGALD 212
I YV G +++A+ +F+ M R+ KA+E T+VS L AC+ L L+
Sbjct: 103 -------------ISSYVGHGRFEDAISVFQRMSRESNLKADEGTIVSTLSACSVLKNLE 149
Query: 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ------------ 260
G + RY++ + +++ +L+DM+ KCG + +A +F +
Sbjct: 150 IGERIYRYVVTE-FEMSVRTGNALVDMFCKCGCLDKARAIFDSMRDKNVKCWTSMVSGYV 208
Query: 261 -----------------SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
DV++W AM+ G E+LELF MQ I PD +
Sbjct: 209 SNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTARIRPDNFVLVS 268
Query: 304 LLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LL+ CA G + + + + + + +VD ++ G + A +M
Sbjct: 269 LLTGCAQTGALEQGKWIHGYIRENRVTVDKVVGTALVDMYAKCGCIETALGVFYEMKERD 328
Query: 364 TA---SMLGSLLTGCMNHGKLDL---AEIVGKKLVEL 394
TA S++ L T M+ LDL E VG +L ++
Sbjct: 329 TASWTSLIYGLATNGMSGRALDLYYEMENVGVRLDDI 365
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/431 (34%), Positives = 235/431 (54%), Gaps = 34/431 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + ++ + + W+ +I Y K++ LF ML +G+ PD +T L
Sbjct: 180 GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLL 239
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L ++ +H + K G + D F+ +L+ MYG
Sbjct: 240 YACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYG--------------------- 278
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
KC E+ AR +F+ MPER++V+W+ +I GY +CG+ E+LV+F++MR+ G
Sbjct: 279 ----------KCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEG 328
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
++V +V+V+ ACA LGA+ + R + Y+ K L + L T++IDM+AKCG ++ A
Sbjct: 329 VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAR 388
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F +E + +V+ W+AMI HG +++L+LF M GI P++IT + LL AC+H
Sbjct: 389 EIFDRME--EKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSH 446
Query: 311 GGLVMEAWYFFKSLGKRGMVPKS-EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E FF + + V +HY C+VD L RAG++ EA + I M +E + G
Sbjct: 447 AGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWG 506
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+ L C H + LAE L+ELQP + G Y+ LSN+YA RW++ TR+ M R
Sbjct: 507 AFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRR 566
Query: 430 VKKYPGWSFVE 440
+KK PGW+++E
Sbjct: 567 LKKIPGWTWIE 577
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 170/329 (51%), Gaps = 37/329 (11%)
Query: 34 VIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTG 93
++ G++K + F +++R G PD+ T PF+ +A L ++ +H + K G
Sbjct: 1 MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60
Query: 94 YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFE 153
+ D F+ +L+ MY KC E+ AR +F+
Sbjct: 61 LDLDHFVCAALVDMY-------------------------------VKCREIEDARFLFD 89
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
M ER++V+W+ +I GY +CG E+LV+FE+MR+ G ++V +V+V+ ACA LGA+ +
Sbjct: 90 KMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHK 149
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
R++ Y+ K L + L T++IDMYAKCG ++ A +F +E + +V+ W+AMI
Sbjct: 150 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRME--EKNVISWSAMIAAY 207
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS 333
HG +++L+LF M G+ PD+IT LL AC+ + + K G+
Sbjct: 208 GYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGL--DL 265
Query: 334 EHYAC--MVDALSRAGQVTEAYEFICQMP 360
+H+ C +VD + ++ +A +MP
Sbjct: 266 DHFVCAALVDMYGKCREIEDARFLFDKMP 294
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 160/475 (33%), Positives = 249/475 (52%), Gaps = 46/475 (9%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G +D + KV ++ WNT++ GY+ + + + + +F M AG+ P+ +T+ L
Sbjct: 183 IGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSL 242
Query: 70 AKASGR-----------------------------------LAKRELAVAVHAQIAKTGY 94
+ R LA + +H + K G+
Sbjct: 243 LSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGF 302
Query: 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVF-E 153
E+ LF+ NSLI +YG G++ AR +F + TK VSWN+++ YA G + A +F +
Sbjct: 303 ENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQ 362
Query: 154 L-------MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
L M NVVSWSA+I G+ G +EAL +F M+ KAN VT+ SVL CA
Sbjct: 363 LEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCA 422
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
L AL GR + +++ + + + LI+MY K G+ KE +VF +E D++ W
Sbjct: 423 ELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIE--NKDLISW 480
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
N M+ G +HG + ++ F +M G PD +TF+ +LSAC+H GLV E F + K
Sbjct: 481 NTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIK 540
Query: 327 RGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
V P+ EHYACMVD L RAG + EA + + MP+EP A + G+LL C H ++AE
Sbjct: 541 EFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAE 600
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++ L + G Y+ LSN+YA RW+++ R + +T+G+KK PG S+++
Sbjct: 601 ETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQ 655
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 162/323 (50%), Gaps = 41/323 (12%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ WN+++R +++ ++ +M + GVS D T+P + +A + R+L +VH
Sbjct: 100 LLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHG 159
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
+ + G++ +L + N L+ MYG G + AR+VF+ M + VSWN+M+ GYA + +
Sbjct: 160 HVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHG 219
Query: 148 ARQVFELMP----ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
A ++F +M E N+V+W++L+ + +CG + E + +F MR G A L VL
Sbjct: 220 ASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLS 279
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK---------------- 247
L A D+G+++ Y++ G L ++ SLI +Y K G +
Sbjct: 280 VSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVS 339
Query: 248 ---------------EALIVFHGVEKH------QSDVLIWNAMIGGLAMHGFVKESLELF 286
EA +F +EK + +V+ W+A+IGG A G +E+LELF
Sbjct: 340 WNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELF 399
Query: 287 TEMQIVGITPDEITFLGLLSACA 309
MQ+ + + +T +LS CA
Sbjct: 400 RRMQLAKVKANSVTIASVLSVCA 422
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 156/363 (42%), Gaps = 40/363 (11%)
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P++ F + +K L+ +H+QI TG F++ ++ +Y G + A+ V
Sbjct: 29 PNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRV 88
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
F+ P + F N++ W++++ V G +EAL
Sbjct: 89 FEVSPI-----------------------ECFS-----NLLLWNSILRANVAHGYCEEAL 120
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
I+ MR +G A+ T V+ ACA +G+ R + ++++ G L + L+ MY
Sbjct: 121 EIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMY 180
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
K G + +A VF + + WN M+ G A++ + E+F M G+ P+ +T
Sbjct: 181 GKIGRMDDARKVFERMAVR--SCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVT 238
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD-----ALSRAGQVTEAYEF 355
+ LLS+ A G +E F + RG+ +E A ++ A G+V Y
Sbjct: 239 WTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGY-- 296
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
+ + E + SL+ HG ++ A I+ +E++ + + L + YA
Sbjct: 297 VVKGGFENYLFVKNSLICLYGKHGNVNAARIL---FLEIKTKNIVSWNALISSYADLGWC 353
Query: 416 DEA 418
DEA
Sbjct: 354 DEA 356
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/435 (34%), Positives = 245/435 (56%), Gaps = 4/435 (0%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S + I Y+ ++ S NP IF +N++I+ +S S ++S+ LF M + PD
Sbjct: 49 SVCASFNRIAYADRLFSQSHNPNIFLFNSIIKAHSLSVPFHQSLLLFSSMKNHRIVPDQY 108
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T+ L K+ L + L V +++ + G+ I ++ +Y C + A ++FD M
Sbjct: 109 TFAPLLKSCANLCEYSLGQCVISEVFRRGFYCFGSIRIGVVELYVCCEKMEDAWKMFDEM 168
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ V WN M+ G+ K G ++ +F M ER++VSW+ +I + EAL +F+
Sbjct: 169 SHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISCLAQNRRDVEALELFQ 228
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG-LSLTLPLQTSLIDMYAKC 243
+M + G K +EVT+V++L C+ LGAL+ G+ + Y KG L + SLID Y KC
Sbjct: 229 QMEEHGFKPDEVTVVTMLPVCSRLGALEVGQRIHSYASSKGNLVGITTVGNSLIDFYCKC 288
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G I++A +F + V+ WN +I G A++G + +++LF EM+ + P++ TF+
Sbjct: 289 GNIEKAYNIFQKMT--CKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEYLKPNDATFVA 346
Query: 304 LLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+L+AC H GL+ + F S+ + + PK EH+ CMVD L R G V EA++ I MP++
Sbjct: 347 VLTACVHSGLLEKGRELFSSMAEDYEIQPKLEHFGCMVDLLGRGGCVEEAHKLIKSMPMQ 406
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P A++ G++L C HG L LAE+ K+L+ L+P + G YV LSN+ A RW+E R
Sbjct: 407 PNATLWGAVLGACRTHGNLKLAEMAVKELISLEPWNSGNYVLLSNMLAEEGRWEEVENVR 466
Query: 423 EAMETRGVKKYPGWS 437
+ M + VKK PG S
Sbjct: 467 QWMREKSVKKAPGQS 481
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/332 (20%), Positives = 125/332 (37%), Gaps = 69/332 (20%)
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
R +HA + G I I + S I YA +F S S N
Sbjct: 22 RTHLTQIHAHFLRHGLHQSNQILAHFISVCASFNRIAYADRLF-------SQSHNP---- 70
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
N+ ++++I + + ++L++F M++ ++ T
Sbjct: 71 --------------------NIFLFNSIIKAHSLSVPFHQSLLLFSSMKNHRIVPDQYTF 110
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
+L +CA+L G+ ++ + +G ++ ++++Y C +++A +F E
Sbjct: 111 APLLKSCANLCEYSLGQCVISEVFRRGFYCFGSIRIGVVELYVCCEKMEDAWKMFD--EM 168
Query: 259 HQSDVLIWNAMIGGLAMHGFVK-------------------------------ESLELFT 287
DV++WN MI G G V E+LELF
Sbjct: 169 SHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISCLAQNRRDVEALELFQ 228
Query: 288 EMQIVGITPDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA 346
+M+ G PDE+T + +L C+ G L + + K +V + ++D +
Sbjct: 229 QMEEHGFKPDEVTVVTMLPVCSRLGALEVGQRIHSYASSKGNLVGITTVGNSLIDFYCKC 288
Query: 347 GQVTEAYEFICQMPLEPTAS----MLGSLLTG 374
G + +AY +M + S +LG L G
Sbjct: 289 GNIEKAYNIFQKMTCKSVVSWNTIILGFALNG 320
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/430 (35%), Positives = 237/430 (55%), Gaps = 13/430 (3%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+D + K + + W ++I GY K+ + ++ LF M P +
Sbjct: 183 VDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSM------PVKDLASWNVMV 236
Query: 73 SGRLAKRELAVAVHAQIAKTGYE-SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
SG + ++ V+A+I D N +I + G++ A++ FD MP K +S
Sbjct: 237 SGYM---DIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVIS 293
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
W MLDGY K G+ N AR +F+ MP +N+V+WS +I GY + G +AL +FE ++
Sbjct: 294 WGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDI 353
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
K +E ++ ++ AC+ LG +D ++ + L L + TSLIDMYAKCG+I++AL
Sbjct: 354 KPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQ 413
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
+F H D+L ++ MI LA HG ++++ LF +MQ I PD +TFLG+L+AC HG
Sbjct: 414 MFEMA--HPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHG 471
Query: 312 GLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GLV E +FK + + G+ P +HYAC+VD L R G + EAY I MP+ P + + G+
Sbjct: 472 GLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGA 531
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL C H + LAE+ +L +++PD+ G Y+ LSN+YA RW R + V
Sbjct: 532 LLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRV 591
Query: 431 KKYPGWSFVE 440
+K G S++E
Sbjct: 592 RKNRGSSWIE 601
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 192/404 (47%), Gaps = 44/404 (10%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G DY+ KV ++ P + W ++I GY +++ +++ SLF++M R +S + T
Sbjct: 46 SRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTIS 105
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ KA RL + + AV+ + K G+ DL + NS++ ++ C + AR+ FD M K
Sbjct: 106 SVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEK 165
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM- 186
VSWN M+ GY +++AR+ F+ MPERNVVSW+++I GYVK GD EA V+F+ M
Sbjct: 166 DIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMP 225
Query: 187 --------------RDVGSKANEV---------------TLVSVLCACAHLGALDQ--GR 215
D+G N ++S C L + R
Sbjct: 226 VKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDR 285
Query: 216 MMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAM 275
M + +I G+ ++D Y K G A +F + +++ W+ MIGG A
Sbjct: 286 MPNKNVISWGI---------MLDGYIKNGDTNGARCLFD--QMPMKNLVTWSTMIGGYAR 334
Query: 276 HGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEH 335
+G ++LELF + I PDE LG++SAC+ G++ A + ++
Sbjct: 335 NGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRV 394
Query: 336 YACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+ ++D ++ G + +A + +M +++ NHG
Sbjct: 395 FTSLIDMYAKCGSIEKALQMF-EMAHPKDLLCYSTMIAALANHG 437
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 16/287 (5%)
Query: 104 LIHMYGSCGDI-----VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER 158
++H+ +C + ++AR + + N +L Y++ G + A +VF+ + +
Sbjct: 5 ILHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQP 64
Query: 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMML 218
N W++LI GYV+ Y EA +F +MR T+ SVL A A L G+ +
Sbjct: 65 NAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVY 124
Query: 219 RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGF 278
+++ G + L +Q S++D++ +C + A F E + D++ WN MI G +
Sbjct: 125 GFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFD--EMCEKDIVSWNMMISGYGNNDR 182
Query: 279 VKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYAC 338
V + + F M + +++ ++ G + EA F S+ + + +
Sbjct: 183 VDIARKFFDRMPERNV----VSWTSMICGYVKAGDMAEAQVLFDSMPVKDLAS----WNV 234
Query: 339 MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
MV G A +MP+ T S +++G G+L+ A+
Sbjct: 235 MVSGYMDIGDCVNARIIFGKMPIHDTGS-WNIMISGFCKAGELESAK 280
>gi|242059647|ref|XP_002458969.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
gi|241930944|gb|EES04089.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
Length = 530
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 217/340 (63%), Gaps = 3/340 (0%)
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV 161
N+++ +Y S GD+V AR VFD MPT+ + SW+ ++ GY K G + AR++F+ MP +N+V
Sbjct: 184 NAMVVLYVSAGDLVSARRVFDEMPTRDTASWSVLIAGYCKGGLVQNARELFDKMPSKNLV 243
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
+ +A+I+GY + G K AL +F ++ G + + T+V V+ A + +G+ + + Y+
Sbjct: 244 ARTAMINGYAQTGQPKAALALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYV 303
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
K + + + T+L+DM+AKCG I++AL F E Q D + A+I GLA HG K
Sbjct: 304 DRKKIERNVKVLTALVDMHAKCGNIEQALSAFR--EIPQPDAYPYTALISGLATHGHEKL 361
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMV 340
+L +F MQ+ + PD ITF+G+L+AC+H GLV + +++++ + G+V +++HYAC++
Sbjct: 362 ALSVFERMQVQAVKPDPITFVGVLTACSHTGLVDKGLEYWEAMVRDYGIVRRADHYACVI 421
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400
D L RAG++ EA+E + MP+ P LG+LL+ C + +++AEIV KL EL+P + G
Sbjct: 422 DMLGRAGRIEEAFEMVQTMPMGPHPGALGALLSACKTYENVEIAEIVANKLFELEPWNTG 481
Query: 401 RYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
Y+ LSN+YA + W+EA R M T+ K PG ++ E
Sbjct: 482 NYILLSNIYAGKELWEEAERVRSLMRTKLPFKNPGSTWFE 521
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 103/241 (42%), Gaps = 32/241 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G + + ++ + + + +I GY+++ P +++LF + AG+ PD T +
Sbjct: 225 GLVQNARELFDKMPSKNLVARTAMINGYAQTGQPKAALALFRDLEAAGIEPDGATMVGVI 284
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A ++ ELA V A + + E ++ + +L+ M+ CG+I A F +P +
Sbjct: 285 SAVSQIGSTELAGWVGAYVDRKKIERNVKVLTALVDMHAKCGNIEQALSAFREIPQPDAY 344
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+ +++ G A G K AL +FE M+
Sbjct: 345 PYTALISGLATHGH-------------------------------EKLALSVFERMQVQA 373
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMI-DKGLSLTLPLQTSLIDMYAKCGAIKEA 249
K + +T V VL AC+H G +D+G M+ D G+ +IDM + G I+EA
Sbjct: 374 VKPDPITFVGVLTACSHTGLVDKGLEYWEAMVRDYGIVRRADHYACVIDMLGRAGRIEEA 433
Query: 250 L 250
Sbjct: 434 F 434
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 139/338 (41%), Positives = 213/338 (63%), Gaps = 6/338 (1%)
Query: 107 MYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSAL 166
MY CG + AR++FD MP K + W SM+ GY GE++ AR++FE P ++VV W+A+
Sbjct: 1 MYCKCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAM 60
Query: 167 IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL 226
I+GYV+ + EA+ +F+EM+ K ++ LV++L CA +GAL+QG + Y+ +KG+
Sbjct: 61 INGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGI 120
Query: 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELF 286
+ + TSLI+MY+KCG I++AL +F G+ + D W ++I GLAM+G ++LELF
Sbjct: 121 PVDAVVGTSLIEMYSKCGCIEKALRIFCGL--REKDTATWTSIICGLAMNGKTSKALELF 178
Query: 287 TEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSR 345
++M+ V PDE+TF+G+LSAC+HGGLV E FF S+ + PK EHY C++D L R
Sbjct: 179 SKMKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGR 238
Query: 346 AGQVTEAYEFICQM---PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRY 402
AGQ+ EA E I ++ E + GSLL+ C + + + E V ++LV+++ +
Sbjct: 239 AGQLDEAEELIKKIVNANNEIIVPLYGSLLSACRIYKNVQMGERVAEQLVKIESRDSSVH 298
Query: 403 VGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L+N+YA RW + R M+ GVKK PG S +E
Sbjct: 299 TLLANIYASAGRWVDVNRVRREMKDLGVKKVPGCSSIE 336
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 108/256 (42%), Gaps = 32/256 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + ++ + W +I GY + + +++++LF +M V PD L
Sbjct: 37 GELDKARELFERSPVKDVVLWTAMINGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALL 96
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
++ E +H I + G D + SLI MY CG I A +F G+ K +
Sbjct: 97 TGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTA 156
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+W S++ G A MN G +AL +F +M+ V
Sbjct: 157 TWTSIICGLA----MN---------------------------GKTSKALELFSKMKQVE 185
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKEA 249
+ +EVT + VL AC+H G +++GR M + L LID+ + G + EA
Sbjct: 186 AIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAGQLDEA 245
Query: 250 LIVFHGVEKHQSDVLI 265
+ + +++++
Sbjct: 246 EELIKKIVNANNEIIV 261
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 160/475 (33%), Positives = 249/475 (52%), Gaps = 46/475 (9%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G +D + KV ++ WNT++ GY+ + + + + +F M AG+ P+ +T+ L
Sbjct: 183 IGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSL 242
Query: 70 AKASGR-----------------------------------LAKRELAVAVHAQIAKTGY 94
+ R LA + +H + K G+
Sbjct: 243 LSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGF 302
Query: 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVF-E 153
E+ LF+ NSLI +YG G++ AR +F + TK VSWN+++ YA G + A +F +
Sbjct: 303 ENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQ 362
Query: 154 L-------MPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
L M NVVSWSA+I G+ G +EAL +F M+ KAN VT+ SVL CA
Sbjct: 363 LEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCA 422
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
L AL GR + +++ + + + LI+MY K G+ KE +VF +E D++ W
Sbjct: 423 ELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIE--NKDLISW 480
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326
N M+ G +HG + ++ F +M G PD +TF+ +LSAC+H GLV E F + K
Sbjct: 481 NTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIK 540
Query: 327 RGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
V P+ EHYACMVD L RAG + EA + + MP+EP A + G+LL C H ++AE
Sbjct: 541 EFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAE 600
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++ L + G Y+ LSN+YA RW+++ R + +T+G+KK PG S+++
Sbjct: 601 ETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQ 655
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 162/323 (50%), Gaps = 41/323 (12%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ WN+++R +++ ++ +M + GVS D T+P + +A + R+L +VH
Sbjct: 100 LLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHG 159
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
+ + G++ +L + N L+ MYG G + AR+VF+ M + VSWN+M+ GYA + +
Sbjct: 160 HVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHG 219
Query: 148 ARQVFELMP----ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
A ++F +M E N+V+W++L+ + +CG + E + +F MR G A L VL
Sbjct: 220 ASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLS 279
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK---------------- 247
L A D+G+++ Y++ G L ++ SLI +Y K G +
Sbjct: 280 VSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVS 339
Query: 248 ---------------EALIVFHGVEKH------QSDVLIWNAMIGGLAMHGFVKESLELF 286
EA +F +EK + +V+ W+A+IGG A G +E+LELF
Sbjct: 340 WNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELF 399
Query: 287 TEMQIVGITPDEITFLGLLSACA 309
MQ+ + + +T +LS CA
Sbjct: 400 RRMQLAKVKANSVTIASVLSVCA 422
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 156/363 (42%), Gaps = 40/363 (11%)
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
P++ F + +K L+ +H+QI TG F++ ++ +Y G + A+ V
Sbjct: 29 PNNDVLDFFNDLLQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRV 88
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
F+ P + F N++ W++++ V G +EAL
Sbjct: 89 FEVSPI-----------------------ECFS-----NLLLWNSILRANVAHGYCEEAL 120
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
I+ MR +G A+ T V+ ACA +G+ R + ++++ G L + L+ MY
Sbjct: 121 EIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMY 180
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
K G + +A VF + + WN M+ G A++ + E+F M G+ P+ +T
Sbjct: 181 GKIGRMDDARKVFERMAVRS--CVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVT 238
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD-----ALSRAGQVTEAYEF 355
+ LLS+ A G +E F + RG+ +E A ++ A G+V Y
Sbjct: 239 WTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGY-- 296
Query: 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415
+ + E + SL+ HG ++ A I+ +E++ + + L + YA
Sbjct: 297 VVKGGFENYLFVKNSLICLYGKHGNVNAARIL---FLEIKTKNIVSWNALISSYADLGWC 353
Query: 416 DEA 418
DEA
Sbjct: 354 DEA 356
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 154/425 (36%), Positives = 237/425 (55%), Gaps = 44/425 (10%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
+ + + W T+I YS N +K++ + M R GV P+ TY + +A L
Sbjct: 112 LFDEMPERNVVSWTTMISAYSNKLN-DKALKCLILMFREGVRPNMFTYSSVLRACDGLPN 170
Query: 79 -RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
R+L H I KTG ESD+F+ ++LI D
Sbjct: 171 LRQL----HCGIIKTGLESDVFVRSALI-------------------------------D 195
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
Y+K +++ A VF+ MP R++V W+++I G+ + D EAL +F+ M+ G A++ T
Sbjct: 196 VYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQAT 255
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF-HGV 256
L SVL AC L L+ GR + +++ L L +LIDMY KCG++++A F V
Sbjct: 256 LTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMV 313
Query: 257 EKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
EK DV+ W+ M+ GLA +G+ +++LELF M+ G P+ IT LG+L AC+H GLV +
Sbjct: 314 EK---DVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEK 370
Query: 317 AWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
WY+F+S+ K G+ P EHY C++D L RAG++ EA + I +M EP + +LL C
Sbjct: 371 GWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGAC 430
Query: 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPG 435
H +DLA KK++EL+P+ G Y+ LSN+YA +RW++ R+ M RG++K PG
Sbjct: 431 RVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPG 490
Query: 436 WSFVE 440
S++E
Sbjct: 491 CSWIE 495
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 148/302 (49%), Gaps = 41/302 (13%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S ++D + V + + WN++I G++++ + N++++LF +M RAG D T
Sbjct: 198 SKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLT 257
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ +A LA EL VH + K ++ DL ++N+LI MY CG + A F M K
Sbjct: 258 SVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEK 315
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+SW++M+ G A+ +GY ++AL +FE M+
Sbjct: 316 DVISWSTMVAGLAQ--------------------------NGY-----SRQALELFESMK 344
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT---SLIDMYAKCG 244
+ GS+ N +T++ VL AC+H G +++G R M K L P + LID+ + G
Sbjct: 345 ESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSM--KKLFGVDPGREHYGCLIDLLGRAG 402
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+ EA+ + H +E + D + W ++G +H V L ++ +I+ + P++ L
Sbjct: 403 RLDEAVKLIHEME-CEPDSVTWRTLLGACRVHRNV--DLAIYAAKKIIELEPEDAGTYIL 459
Query: 305 LS 306
LS
Sbjct: 460 LS 461
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 6/156 (3%)
Query: 156 PERNVVSWSALIDGYVK-CG--DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD 212
P R V S L++ + C D A+ + M G A+ +T ++ C+ GA+
Sbjct: 13 PLRYVADPSPLVNEFANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQ 72
Query: 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
+G+ + ++ KG + + +L++MY K ++EA +F E + +V+ W MI
Sbjct: 73 EGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFD--EMPERNVVSWTTMISA 130
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
+ + ++L+ M G+ P+ T+ +L AC
Sbjct: 131 YS-NKLNDKALKCLILMFREGVRPNMFTYSSVLRAC 165
>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 149/415 (35%), Positives = 228/415 (54%), Gaps = 7/415 (1%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN +I GY ++++L KM G+ D +TY + A + ++ VHA I
Sbjct: 257 WNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYIL 316
Query: 91 KTGYESD----LFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146
K + L +SN+LI +Y + AR++F MP + ++WN++L GY G M
Sbjct: 317 KNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRME 376
Query: 147 MARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA 206
A+ FE MP +N+++ + +I G + G E L +F++MR G + + L AC+
Sbjct: 377 EAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACS 436
Query: 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266
LGAL+ GR + ++ G +L + ++I MYAKCG ++ A VF V D++ W
Sbjct: 437 VLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVF--VTMPSVDLVSW 494
Query: 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS-LG 325
N+MI L HG +++ELF +M G+ PD ITFL +L+AC+H GLV + ++F S L
Sbjct: 495 NSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLE 554
Query: 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
G+ P +HYA MVD RAG + A I MP +P A + +LL GC HG +DL
Sbjct: 555 SYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGI 614
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
++L +L P +DG YV LSN+YA RW+E R+ M + V+K P S++E
Sbjct: 615 EAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIE 669
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 124/460 (26%), Positives = 209/460 (45%), Gaps = 86/460 (18%)
Query: 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVA-VHAQ 88
++N +I GY+ + + + ++ LF M R PD T+ + A E +H
Sbjct: 114 FYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCA 173
Query: 89 IAKTGYES-DLFISNSLIHMYG--------SCGDIVYAREVFDGMPTKMSVSWNSMLDGY 139
+ KTG + N+L+ +Y SC +V AR++FD MP + ++W +M+ GY
Sbjct: 174 VVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGY 233
Query: 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLV 199
+ ++N AR+VFE M E +W+A+I GYV CG ++EAL + +MR +G + +++T
Sbjct: 234 VRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYT 293
Query: 200 SVLCACAHLGALDQGRMMLRYMIDKGL----SLTLPLQTSLIDMYAKCGAIKEALIVFHG 255
+++ ACA++G+ G+ + Y++ L S L + +LI +Y K + EA +F+
Sbjct: 294 TIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYA 353
Query: 256 VEKHQSDVLIWNA-------------------------------MIGGLAMHGFVKESLE 284
+ +++ WNA MI GLA +GF E L+
Sbjct: 354 MPVR--NIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLK 411
Query: 285 LFTEMQIVGITPDEITFLGLLSACA-----------HGGLVMEAWYFFKSLG-------- 325
LF +M++ G P + F G L+AC+ H LV + S+G
Sbjct: 412 LFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYA 471
Query: 326 KRGMVPKSE------------HYACMVDALSRAGQVTEAYEFICQMPLE---PTASMLGS 370
K G+V +E + M+ AL + G +A E QM E P +
Sbjct: 472 KCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLT 531
Query: 371 LLTGCMNHGKLDLAEIVGKKLVE---LQP--DHDGRYVGL 405
+LT C + G ++ ++E + P DH R V L
Sbjct: 532 VLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDL 571
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 161/354 (45%), Gaps = 46/354 (12%)
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
A LA AVHA + +G++ N L+ MY ++VYAR++F+ +P +++ +++
Sbjct: 27 ASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLI 86
Query: 137 DGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
Y G + + R++F P R+ V ++A+I GY GD AL +F MR + +
Sbjct: 87 TAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPD 146
Query: 195 EVTLVSVLCACA-HLGALDQGRMMLRYMIDKGLS-LTLPLQTSLIDMYAK--------CG 244
+ T SVL A +G Q M ++ G+ ++ + +L+ +Y K C
Sbjct: 147 DFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCS 206
Query: 245 AIKEALIVFHGVEKH-------------QSDVL----------------IWNAMIGGLAM 275
A+ A +F + K ++D L WNAMI G
Sbjct: 207 AMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVH 266
Query: 276 HGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEH 335
G +E+L L +M+ +GI D+IT+ ++SACA+ G + K + P
Sbjct: 267 CGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSF 326
Query: 336 YACMVDAL----SRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAE 385
+ +AL + +V EA + MP+ + ++L+G +N G+++ A+
Sbjct: 327 CLSVSNALITLYCKNNKVDEARKIFYAMPVRNIIT-WNAILSGYVNAGRMEEAK 379
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 154/425 (36%), Positives = 234/425 (55%), Gaps = 36/425 (8%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
V + + W +I GYS+ ++++ LFV+MLR+ P+ T+ + + +
Sbjct: 67 VFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSG 126
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
EL +H+ I K YE+ +F+ +SL LD
Sbjct: 127 FELGRQIHSHIFKRNYENHIFVGSSL-------------------------------LDM 155
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
YAK G ++ AR VFE +PER+VVS +A+I GY + G +EAL +F ++ G +N VT
Sbjct: 156 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTY 215
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
S+L A + L ALD G+ + +++ L + LQ SLIDMY+KCG + A +F+ +
Sbjct: 216 ASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPV 275
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACAHGGLVMEA 317
V+ WNAM+ G + HG E ++LF M+ + PD +TFL +LS C+HGGL +
Sbjct: 276 RT--VISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKG 333
Query: 318 WYFFKSL--GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC 375
F + G + EHY C++D L RAG+V EA+E I +MP EPTA++ GSLL C
Sbjct: 334 LEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGAC 393
Query: 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPG 435
H ++ E VG +L+E++P++ G YV LSN+YA RW++ R RE M + V K PG
Sbjct: 394 RVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPG 453
Query: 436 WSFVE 440
S++E
Sbjct: 454 RSWIE 458
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 126/246 (51%), Gaps = 11/246 (4%)
Query: 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
Y KC + AR VF+ M ERNVVSW+A+I GY + G EAL +F +M ++ NE T
Sbjct: 55 YTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTF 114
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
+VL +C + GR + ++ + + + +SL+DMYAK G I EA VF +
Sbjct: 115 ATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLP- 173
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318
+ DV+ A+I G A G +E+LELF +Q G++ + +T+ LL+A + G ++
Sbjct: 174 -ERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALS-GLAALDHG 231
Query: 319 YFFKSLGKRGMVPKSEHYAC----MVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374
S R +P Y ++D S+ G + A + MP+ S ++L G
Sbjct: 232 KQVHSHVLRCELP---FYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISW-NAMLVG 287
Query: 375 CMNHGK 380
HGK
Sbjct: 288 YSKHGK 293
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 39/291 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I + V L + +I GY++ +++ LF ++ R G+S +++TY L
Sbjct: 160 GRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLL 219
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A LA + VH+ + + + + NSLI MY CG++ YAR++F+ MP + +
Sbjct: 220 TALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVI 279
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+ML GY+K G+ ++F+LM E N V
Sbjct: 280 SWNAMLVGYSKHGKGIEVVKLFKLMREENKV----------------------------- 310
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT--SLIDMYAKCGAIKE 248
K + VT ++VL C+H G D+G M M++ G + ++ +ID+ + G ++E
Sbjct: 311 -KPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEE 369
Query: 249 ALIVFHGVEK--HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
A F ++K + IW +++G +H ++ F +++ I P+
Sbjct: 370 A---FELIKKMPFEPTAAIWGSLLGACRVHS--NTNIGEFVGCRLLEIEPE 415
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 92/223 (41%), Gaps = 49/223 (21%)
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
+L C + A+ +G+ + +MI + L T LI +Y KC + A VF E +
Sbjct: 16 LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFD--EMRE 73
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC------------ 308
+V+ W AMI G + GF E+L LF +M P+E TF +LS+C
Sbjct: 74 RNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQI 133
Query: 309 -----------------------AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSR 345
A G + EA F+ L +R +V + ++ ++
Sbjct: 134 HSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT----AIISGYAQ 189
Query: 346 AGQVTEAYEFICQMPLEPTAS---MLGSLLT-----GCMNHGK 380
G EA E C++ E +S SLLT ++HGK
Sbjct: 190 LGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGK 232
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 85/188 (45%), Gaps = 11/188 (5%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA--GVSPDHLT 65
S GN++Y+ K+ +++ + WN ++ GYSK + + LF K++R V PD +T
Sbjct: 258 SKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLF-KLMREENKVKPDSVT 316
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISN--SLIHMYGSCGDIVYAREVFDG 123
+ + + + + ++ G E + I + +I + G G + A E+
Sbjct: 317 FLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKK 376
Query: 124 MPTKMSVS-WNSMLDGYAKCGEMNMAR----QVFELMPERNVVSWSALIDGYVKCGDYKE 178
MP + + + W S+L N+ ++ E+ PE N ++ L + Y G +++
Sbjct: 377 MPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPE-NAGNYVILSNLYASAGRWED 435
Query: 179 ALVIFEEM 186
+ E M
Sbjct: 436 VRNVRELM 443
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/418 (36%), Positives = 233/418 (55%), Gaps = 7/418 (1%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ W ++ Y +++ F KM G P+ +T + A L + VH
Sbjct: 144 VISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHG 203
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
+ + G ++F+S++L++MY SC I A+ VFD M + +VSWN ++ Y E
Sbjct: 204 FVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEK 263
Query: 148 ARQVF-ELMPE---RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
VF +M E N SW+A+I G ++ G ++AL + M++ G K N++T+ SVL
Sbjct: 264 GLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLP 323
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
AC +L +L G+ + Y+ L T+L+ MYAKCG ++ + VF + K D
Sbjct: 324 ACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKR--DT 381
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323
+ WN MI +MHG +E+L LF EM G+ P+ +TF G+LS C+H LV E F S
Sbjct: 382 VSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDS 441
Query: 324 LGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
+ + V P ++H++CMVD LSRAG++ EAYEFI +MP+EPTA G+LL GC + ++
Sbjct: 442 MSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVE 501
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
L I +L E++ D+ G YV LSN+ K W EA TR+ M RGV K PG S+++
Sbjct: 502 LGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQ 559
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 114/464 (24%), Positives = 189/464 (40%), Gaps = 110/464 (23%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFL 69
G++ + + + P + W +I +K ++I + V PD L +
Sbjct: 25 GDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSV 84
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
AKA L A VH + G+ SD+ + N+LI MYG C
Sbjct: 85 AKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKC------------------ 126
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+C E AR VFE MP R+V+SW+++ YV CG +EAL F +M
Sbjct: 127 -----------RCSEG--ARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLN 173
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G + N VT+ S+L AC L L GR + +++ G+ + + ++L++MYA C +I++A
Sbjct: 174 GERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQA 233
Query: 250 LIVFHGVEKHQS---DVLI------------------------------WNAMIGGLAMH 276
+VF + + + +VLI WNA+IGG +
Sbjct: 234 QLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQN 293
Query: 277 GFVKESLELFTEMQIVGITPDEITFLGLLSACAH----------GGLVMEAWYF------ 320
G +++LE+ + MQ G P++IT +L AC + G + W+F
Sbjct: 294 GRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTT 353
Query: 321 -------------------FKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-- 359
F + KR V + M+ A S G EA +M
Sbjct: 354 TALVFMYAKCGDLELSRRVFSMMTKRDTVS----WNTMIIATSMHGNGEEALLLFREMVD 409
Query: 360 -PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE---LQPDHD 399
+ P + +L+GC + +D ++ + ++PD D
Sbjct: 410 SGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDAD 453
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 119/300 (39%), Gaps = 72/300 (24%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV------------------- 59
V +S WN +I Y +K K +S+F +M+ GV
Sbjct: 236 VFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGR 295
Query: 60 ----------------SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNS 103
P+ +T + A L +H I + + DL + +
Sbjct: 296 TEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTA 355
Query: 104 LIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSW 163
L+ MY CGD+ +R VF M + +VSWN+M+ +A +
Sbjct: 356 LVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMI----------IATSMH----------- 394
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI- 222
G+ +EAL++F EM D G + N VT VL C+H +D+G ++ M
Sbjct: 395 ----------GNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSR 444
Query: 223 DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH--QSDVLIWNAMIGGLAMHGFVK 280
D + + ++D+ ++ G ++EA + ++K + W A++GG ++ V+
Sbjct: 445 DHSVEPDADHHSCMVDVLSRAGRLEEA---YEFIKKMPIEPTAGAWGALLGGCRVYKNVE 501
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 7/190 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP-FL 69
G+++ S +V S ++ WNT+I S N +++ LF +M+ +GV P+ +T+ L
Sbjct: 364 GDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVL 423
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+ S E + + E D + ++ + G + A E MP + +
Sbjct: 424 SGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPT 483
Query: 130 V-SWNSMLDGYAKCGEMNMAR----QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+W ++L G + + R ++FE+ + N ++ L + V + EA +
Sbjct: 484 AGAWGALLGGCRVYKNVELGRIAANRLFEIESD-NPGNYVLLSNILVSAKLWSEASETRK 542
Query: 185 EMRDVGSKAN 194
MRD G N
Sbjct: 543 LMRDRGVTKN 552
>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
gi|194689034|gb|ACF78601.1| unknown [Zea mays]
gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
Length = 606
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/435 (36%), Positives = 237/435 (54%), Gaps = 39/435 (8%)
Query: 12 NIDYSCKVLSHLSNPRIFYW-NTVIRGYSKSKNPNKS-----ISLFVKMLRAGVSPDHLT 65
++ Y+ +V ++ P W NT++RGY++S + + S + +FV+ML GV+PD T
Sbjct: 76 HLAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYT 135
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ L KA E HA K G ++ +LI+MY
Sbjct: 136 FVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMY----------------- 178
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
A+CG+ AR F VVS++A+I V+ EALV+F E
Sbjct: 179 --------------AECGDARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFRE 224
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
M+ G VT++SVL ACA LGAL GR + Y+ GL + + T+L+DMYAKCG+
Sbjct: 225 MQAKGLNPTPVTVISVLSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGS 284
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
+++A+ VF G+E D W+ MI A HG+ +E++ LF EM+ G+ PD+ITFLGLL
Sbjct: 285 LEDAIAVFQGME--SRDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLL 342
Query: 306 SACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365
AC+H GLV E +F + G+VP +HY C+ D L+R+GQ+ AY+FI ++P+ PT
Sbjct: 343 YACSHSGLVSEGLRYFDDMKDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTP 402
Query: 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425
+ +LL+ C HG ++L + V ++++EL H G YV SN+ A W+E R+ M
Sbjct: 403 ILWRTLLSACGGHGDVELGKRVFERILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKLM 462
Query: 426 ETRGVKKYPGWSFVE 440
+GV K PG S +E
Sbjct: 463 SDKGVVKVPGCSSIE 477
>gi|449527549|ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 487
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 159/426 (37%), Positives = 235/426 (55%), Gaps = 11/426 (2%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y+C + +L IF +N++IRGY S+ P ++I ++ ++ G + T+P L KA
Sbjct: 62 YACGIFKNLQQRNIFMYNSMIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIKACA 121
Query: 75 RLAKREL---AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
L REL VHA + GYE+D F+ ++L+ Y S D+ AR +FD K V
Sbjct: 122 -LVYRELKRIGYLVHAHVIVLGYENDAFVVSALVEFY-SLFDLKVARVLFDKSSGKDVVV 179
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191
W M+DGY K G++ AR +F+ MPERNV+SWSA++ Y + D++E L +F +M+
Sbjct: 180 WTVMVDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNI 239
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
N+ +VSVL ACAHLGA+ QG M Y GL L T+L+DMY+KCG I+ AL
Sbjct: 240 VPNDSVIVSVLTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALE 299
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF G+ D WNAMI G AM G V +SLELF +M G E TF+ +L+AC H
Sbjct: 300 VFEGIS--NKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATFVSILAACTHA 357
Query: 312 GLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPTASM 367
+V FF + V P+ EHYAC+VD ++RAG V +A +F+ + A++
Sbjct: 358 KMVERGLEFFDQMYPVYRVQPQFEHYACVVDLMARAGMVEDAEKFVEEKMGGFSNVDANV 417
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
G++L+ C + +++ + + KL L G V N+++ R A+ R+
Sbjct: 418 WGAILSACRQYRNIEIGDRIWTKLSALGLLDGGTQVLSYNIFSEAGREMAAKEVRKKFSE 477
Query: 428 RGVKKY 433
KKY
Sbjct: 478 ARSKKY 483
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 128/290 (44%), Gaps = 38/290 (13%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+G+I+ + + + + W+ ++ YS+ + + + LF +M + + P+ +
Sbjct: 190 VGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDSVIVSV 249
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
A L + +H+ + G +S+ ++ +L+ MY CG I A EVF+G+ K +
Sbjct: 250 LTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALEVFEGISNKDA 309
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
+WN+M+ G+A G NVV ++L +F++M
Sbjct: 310 GAWNAMISGFAMTG---------------NVV----------------KSLELFDKMIAS 338
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQTSLIDMYAKCGAIKE 248
G++A E T VS+L AC H +++G M + ++D+ A+ G +++
Sbjct: 339 GTQATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQPQFEHYACVVDLMARAGMVED 398
Query: 249 ALIVFHGVEK----HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294
A EK D +W A++ + ++ ++T++ +G+
Sbjct: 399 AEKFVE--EKMGGFSNVDANVWGAILSACRQYRNIEIGDRIWTKLSALGL 446
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G I+ + +V +SN WN +I G++ + N KS+ LF KM+ +G T+
Sbjct: 289 SKCGYIESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATFV 348
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYE 95
+ LA HA++ + G E
Sbjct: 349 SI-----------LAACTHAKMVERGLE 365
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 159/434 (36%), Positives = 237/434 (54%), Gaps = 40/434 (9%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
IDY+ ++ + NP ++ + +I G+ S N +I L+ +ML + PD+ + KA
Sbjct: 80 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKA 139
Query: 73 SG-RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
G +LA RE VH++ K G S+ + ++ +YG
Sbjct: 140 CGSQLALRE-GREVHSRALKLGLSSNRLVRLRIMELYG---------------------- 176
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPE----RNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
KCGE+ AR+VFE MPE ++ V W+A+IDG+V+ + AL F M+
Sbjct: 177 ---------KCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQ 227
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
+ NE T+V VL AC+ LGAL+ GR + YM + L L + +LI+MY++CG+I
Sbjct: 228 GENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSID 287
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
EA VF E DV+ +N MI GL+M+G ++++ELF M + P +TF+G+L+A
Sbjct: 288 EAQTVFD--EMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNA 345
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+HGGLV + F S+ + G+ P+ EHY CMVD L R G++ EAY+ I M + P
Sbjct: 346 CSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHI 405
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
MLG+LL+ C H L+L E V K L + G YV LS+VYA +W EA R M+
Sbjct: 406 MLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMK 465
Query: 427 TRGVKKYPGWSFVE 440
G++K PG S +E
Sbjct: 466 EAGMQKEPGCSSIE 479
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 79/188 (42%), Gaps = 5/188 (2%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+ID + V + + + +NT+I G S + ++I LF M+ + P ++T+
Sbjct: 281 SRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFV 340
Query: 68 FLAKASGRLAKRELAVAV-HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP- 125
+ A + + H+ G E + ++ + G G + A ++ M
Sbjct: 341 GVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKM 400
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV---SWSALIDGYVKCGDYKEALVI 182
T + ++L + + QV +++ +R ++ L Y G +KEA +
Sbjct: 401 TPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQV 460
Query: 183 FEEMRDVG 190
+M++ G
Sbjct: 461 RAKMKEAG 468
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/430 (35%), Positives = 243/430 (56%), Gaps = 4/430 (0%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
ID + ++ + N + Y + +++ +F M+ +GV PD ++ +
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+L + H + + G+ES I N+LI MY C A +FD M K V+W
Sbjct: 347 CSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTW 406
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV-GS 191
NS++ GY + GE++ A + FE MPE+N+VSW+ +I G V+ ++EA+ +F M+ G
Sbjct: 407 NSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGV 466
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
A+ VT++S+ AC HLGALD + + Y+ G+ L + L T+L+DM+++CG + A+
Sbjct: 467 NADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMS 526
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
+F+ + DV W A IG +AM G + ++ELF +M G+ PD + F+G L+AC+HG
Sbjct: 527 IFNSLTNR--DVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHG 584
Query: 312 GLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GLV + F S+ K G+ P+ HY CMVD L RAG + EA + I MP+EP + S
Sbjct: 585 GLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNS 644
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL C G +++A +K+ L P+ G YV LSNVYA RW++ R +M+ +G+
Sbjct: 645 LLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGL 704
Query: 431 KKYPGWSFVE 440
+K PG S ++
Sbjct: 705 RKPPGTSSIQ 714
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 146/282 (51%), Gaps = 32/282 (11%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
F +N++IRGY+ S N++I LF++M+ +G+SPD T+PF A + + + +H
Sbjct: 100 FMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGL 159
Query: 89 IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
I K GY DLF+ NSL+H Y CG++ AR+VFD M + VSW SM+ GYA+ + A
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYAR---RDFA 216
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
+ +L F +RD N VT+V V+ ACA L
Sbjct: 217 KDAVDL---------------------------FFRMVRDEEVTPNSVTMVCVISACAKL 249
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
L+ G + ++ + G+ + + ++L+DMY KC AI A +F E S++ + NA
Sbjct: 250 EDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFD--EYGASNLDLCNA 307
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
M G +E+L +F M G+ PD I+ L +S+C+
Sbjct: 308 MASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 161/375 (42%), Gaps = 66/375 (17%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFL 69
G +D + KV +S + W ++I GY++ ++ LF +M+R V+P+ +T +
Sbjct: 183 GELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCV 242
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYE-SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A +L E V+A I +G E +DL +S
Sbjct: 243 ISACAKLEDLETGEKVYAFIRNSGIEVNDLMVS--------------------------- 275
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
+++D Y KC +++A+++F+ N+ +A+ YV+ G +EAL +F M D
Sbjct: 276 -----ALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMD 330
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G + + ++++S + +C+ L + G+ Y++ G + +LIDMY KC
Sbjct: 331 SGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDT 390
Query: 249 ALIVFHGVEKH-----------------------------QSDVLIWNAMIGGLAMHGFV 279
A +F + + +++ WN +I GL
Sbjct: 391 AFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLF 450
Query: 280 KESLELFTEMQIV-GITPDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHYA 337
+E++E+F MQ G+ D +T + + SAC H G L + W ++ + K G+
Sbjct: 451 EEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYY-IEKNGIQLDVRLGT 509
Query: 338 CMVDALSRAGQVTEA 352
+VD SR G A
Sbjct: 510 TLVDMFSRCGDPESA 524
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI----VFHGVEKHQSDVLI 265
+D+ +M R + +GL + T L+ + G +E+L VF E + + +
Sbjct: 44 TIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGT-RESLSFAKEVFENSESYGT-CFM 101
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+N++I G A G E++ LF M GI+PD+ TF LSACA
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACA 145
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 9/191 (4%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
S G+ + + + + L+N + W I + + N ++I LF M+ G+ PD + +
Sbjct: 515 FSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAF 574
Query: 67 --PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
A + G L ++ + ++ + G + ++ + G G + A ++ + M
Sbjct: 575 VGALTACSHGGLVQQGKEI-FYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDM 633
Query: 125 PTKMS-VSWNSMLDGYAKCGEMNMARQVFE----LMPERNVVSWSALIDGYVKCGDYKEA 179
P + + V WNS+L G + MA E L PER S+ L + Y G + +
Sbjct: 634 PMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPER-TGSYVLLSNVYASAGRWNDM 692
Query: 180 LVIFEEMRDVG 190
+ M++ G
Sbjct: 693 AKVRLSMKEKG 703
>gi|356501900|ref|XP_003519761.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g62890-like [Glycine max]
Length = 567
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 165/412 (40%), Positives = 240/412 (58%), Gaps = 44/412 (10%)
Query: 16 SCKVLSH------LSNPRI--FYWNTVIRGYSKS--KNPNKSISLFVKMLRAGVSPDHLT 65
S KV+S+ LS P I F WN +IR +++ K+ ++SL+++M V PD T
Sbjct: 4 SAKVISYTHPSLYLSYPNIESFVWNNLIRANTRNRVKSFPPALSLYLRMRHHAVLPDLHT 63
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+PFL ++ + +HAQI G +D F+ SLI+MY S G + +AR+VFD +
Sbjct: 64 FPFLLQS---INTPHPGRQLHAQIFLLGLANDPFVQTSLINMYSSRGTLTFARQVFDEIT 120
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
SWN+++ AK G +++AR++F+ MP RNV+SWS +I GY CG+YK AL +F
Sbjct: 121 QPDLPSWNAIIHANAKAGMIHIARKLFDQMPHRNVISWSCMIHGYASCGEYKAALSLFRS 180
Query: 186 MRDV-GSK--ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
++ + GSK NE CA LGAL+ G+ + Y+ G+ + + L TSLIDMYAK
Sbjct: 181 LQTLEGSKVQPNE--------XCARLGALEHGKWVHAYIDKTGMKIDVVLGTSLIDMYAK 232
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG I G EK DV+ W+AMI AMHG +E LELF M G+ P+ +TF+
Sbjct: 233 CGXI-------FGPEK---DVMAWSAMITAFAMHGLSEECLELFARMVNDGVRPNAVTFV 282
Query: 303 GLLSACAHGGLVMEA-WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
G+L AC HGGLV E YF K + + G+ P +HY C+VD SRAG++ +A+ + MP+
Sbjct: 283 GVLCACVHGGLVSEGNEYFKKRMKEYGVSPTIQHYGCIVDLYSRAGRIEDAWSVVKSMPV 342
Query: 362 EPTASMLGSLLT--GCMNHGKLDLAE-----IVGKKLVELQPDHDGRYVGLS 406
EP + G+LL+ GCM KL L + G+ L++L D +G+ LS
Sbjct: 343 EPDVMIWGALLSGLGCMGTLKLRLEKHGYERNTGEVLLDL--DEEGKEFALS 392
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 120/278 (43%), Gaps = 52/278 (18%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR---AGVSPDHLTYP 67
G I + K+ + + + W+ +I GY+ ++SLF + + V P+
Sbjct: 138 GMIHIARKLFDQMPHRNVISWSCMIHGYASCGEYKAALSLFRSLQTLEGSKVQPN----- 192
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ RL E VHA I KTG + D+ + SLI MY CG I P K
Sbjct: 193 ---EXCARLGALEHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGXIF--------GPEK 241
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
++W SA+I + G +E L +F M
Sbjct: 242 DVMAW-------------------------------SAMITAFAMHGLSEECLELFARMV 270
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMML-RYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ G + N VT V VLCAC H G + +G + M + G+S T+ ++D+Y++ G I
Sbjct: 271 NDGVRPNAVTFVGVLCACVHGGLVSEGNEYFKKRMKEYGVSPTIQHYGCIVDLYSRAGRI 330
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLE 284
++A V + + DV+IW A++ GL G +K LE
Sbjct: 331 EDAWSVVKSMPV-EPDVMIWGALLSGLGCMGTLKLRLE 367
>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 582
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/400 (37%), Positives = 218/400 (54%), Gaps = 3/400 (0%)
Query: 43 NPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISN 102
NP+ ++ LF +LR+G PD + Y R A +H AK G S + N
Sbjct: 55 NPHLALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRN 114
Query: 103 SLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVS 162
LIH Y CG + AR+VFD P ++WN +L GYA+ + R+ F MP R+ VS
Sbjct: 115 GLIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVS 174
Query: 163 WSALIDGYVKCGDYKEALVIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYM 221
W+ +I V G+++EA+ +F EM + + VTLVSV+ A A+LGAL QG Y+
Sbjct: 175 WNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYV 234
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
K + + L ++LI+MY+KCG I+ A+ VF +S V WNAM+ G G +
Sbjct: 235 CRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRS-VDTWNAMLAGFTASGCSER 293
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMV 340
+LELFT M+ G P++ITF LL+AC+HGG V E +F+ + + P HY CMV
Sbjct: 294 ALELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMV 353
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400
D RAG +A E I MP+EP A++ +L+ C + +L + G +L+E P+
Sbjct: 354 DLFCRAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPNDHA 413
Query: 401 RYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
YV LSN+YA+ W R+ M GV+K PG S +E
Sbjct: 414 GYVLLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIE 453
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 114/289 (39%), Gaps = 66/289 (22%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNP-------------------------------NK 46
KV H + WN ++RGY++ ++ +
Sbjct: 131 KVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSWNTVIAWCVANGEHEE 190
Query: 47 SISLFVKMLRAG-VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLI 105
++++F +ML + PD +T + A L + HA + + E D +S++LI
Sbjct: 191 AVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVCRKEIEVDEKLSSALI 250
Query: 106 HMYGSCGDIVYAREVFDGMPTKMSV-SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWS 164
+MY CG I A VF+ SV +WN+ML G+ G
Sbjct: 251 NMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASG--------------------- 289
Query: 165 ALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID- 223
C + AL +F M G N++T ++L AC+H G +++G M +
Sbjct: 290 --------CSE--RALELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNS 339
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
+ + ++D++ + G ++A + + + D +W A++G
Sbjct: 340 SSIEPDIAHYGCMVDLFCRAGLFEKAEEMIQ-MMPMEPDAAVWKALVGA 387
>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
Length = 1072
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/432 (34%), Positives = 243/432 (56%), Gaps = 38/432 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GN+ KV + I WNT+I ++++ P +++ LFV+M G+ PD +
Sbjct: 549 GNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSL 608
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A G ++ +L +H I KTG +D F+ N+LI MY
Sbjct: 609 SACGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMY---------------------- 645
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
AKCG ++ A ++FE + E+++V+W+++I G+ + G EA+ +F++M
Sbjct: 646 ---------AKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNC 696
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K +++T +SV+ AC+HLG L++G+ + +I GL L T+L DMY+KCG ++ A
Sbjct: 697 VKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMA- 755
Query: 251 IVFHGVEKHQSD--VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
HGV S+ ++ W+ MI G MHG + ++ LF +M GI P++ITF+ +LSAC
Sbjct: 756 ---HGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSAC 812
Query: 309 AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
+H G V E +F S+ + G+ PK +H+ACMVD LSRAG + AY+ I +P +S+
Sbjct: 813 SHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIW 872
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL GC H ++D+ + + K L+++ G Y LSN+YA WD+ R M+++
Sbjct: 873 GALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSK 932
Query: 429 GVKKYPGWSFVE 440
G++K PG+S +E
Sbjct: 933 GLRKVPGYSTIE 944
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/399 (22%), Positives = 186/399 (46%), Gaps = 33/399 (8%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPF 68
+G + S +V P F W +I+ Y +++SL+ +M+ + + +P
Sbjct: 393 IGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPS 452
Query: 69 LAKA---------SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI----- 114
+ KA G+ + + + +Q+ E D S +++ + +C ++
Sbjct: 453 VLKACSGFGDLSVGGKNGQASEGLDMFSQMISEAVEPD---SVTMLSVTEACSELGSLRL 509
Query: 115 -----------VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSW 163
V+ + M ++ ++++ YA G + +VFE + E+ ++SW
Sbjct: 510 GRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSW 569
Query: 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223
+ LI + + G +EAL++F +M+ G + +L S L AC + G + Y+I
Sbjct: 570 NTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIK 629
Query: 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESL 283
G + +Q +LIDMYAKCG + A +F ++ + ++ WN+MI G + +G+ E++
Sbjct: 630 TG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIK--EKSLVTWNSMICGFSQNGYSVEAI 686
Query: 284 ELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDAL 343
LF +M + + D++TFL ++ AC+H G + + + L G+ S + D
Sbjct: 687 TLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMY 746
Query: 344 SRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
S+ G++ A+ +M E + ++ G HG+++
Sbjct: 747 SKCGELQMAHGVFDRMS-ERSIVSWSVMIAGYGMHGQIN 784
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 104/249 (41%), Gaps = 31/249 (12%)
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
R A +HA + TG S LI Y G ++ VFD P S W
Sbjct: 357 RCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGV 416
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV--------------KCGDYKEAL 180
++ Y G A ++ M ++ S + V K G E L
Sbjct: 417 LIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGL 476
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRM------------MLRYMIDKGLSL 228
+F +M + + VT++SV AC+ LG+L GR+ ++R +D L
Sbjct: 477 DMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDF 536
Query: 229 TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288
P +L+++YA G +++ VF ++ + +L WN +I +G +E+L LF +
Sbjct: 537 LGP---ALMELYADTGNLRDCHKVFETIK--EKTILSWNTLISIFTRNGQPEEALLLFVQ 591
Query: 289 MQIVGITPD 297
MQ G+ PD
Sbjct: 592 MQTQGLMPD 600
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G + + V +S I W+ +I GY N +ISLF +ML +G+ P+ +T+
Sbjct: 747 SKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFM 806
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A E +++ G E ++ + GD+ A ++ +P
Sbjct: 807 HILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFP 866
Query: 128 MSVS-WNSMLDG 138
+ S W ++L+G
Sbjct: 867 ANSSIWGALLNG 878
>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1582
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/411 (36%), Positives = 227/411 (55%), Gaps = 34/411 (8%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
WN ++ GY S + K++ L++ M +G + +T AKA+G L + + A +
Sbjct: 1077 WNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVV 1136
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G+ DLF+ + +LD Y KCGEM AR+
Sbjct: 1137 KRGFNLDLFV-------------------------------ISGVLDMYLKCGEMESARR 1165
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA 210
+F +P + V+W+ +I G V+ G + AL + MR + +E T +++ AC+ L A
Sbjct: 1166 IFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTA 1225
Query: 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI 270
L+QGR + + + + TSL+DMYAKCG I++A +F + S + WNAMI
Sbjct: 1226 LEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFK--RTNTSRIASWNAMI 1283
Query: 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGM 329
GLA HG +E+L+ F EM+ G+TPD +TF+G+LSAC+H GLV EA+ F S+ K G+
Sbjct: 1284 VGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGI 1343
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389
P+ EHY+C+VDALSRAG++ EA + I MP E +ASM +LL C + + V +
Sbjct: 1344 EPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAE 1403
Query: 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
KL+ L+P YV LSNVYA +W+ + R M VKK PG+S+V+
Sbjct: 1404 KLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVD 1454
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 96/375 (25%), Positives = 169/375 (45%), Gaps = 35/375 (9%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + V ++ + WNT+I G + S S+ +FV +LR G+ PD T +
Sbjct: 955 GSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVL 1014
Query: 71 KASGRLAKR-ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
+A L LA +HA K G D F+S +LI
Sbjct: 1015 RACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLI------------------------ 1050
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
D Y+K G+M A +F ++ SW+A++ GY+ GD+ +AL ++ M++
Sbjct: 1051 -------DVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQES 1103
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
G +AN++TL + A L L QG+ + ++ +G +L L + + ++DMY KCG ++ A
Sbjct: 1104 GERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESA 1163
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+F+ E D + W MI G +G + +L + M++ + PDE TF L+ AC+
Sbjct: 1164 RRIFN--EIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACS 1221
Query: 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
+ + + K +VD ++ G + +A + AS
Sbjct: 1222 LLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASW-N 1280
Query: 370 SLLTGCMNHGKLDLA 384
+++ G HG + A
Sbjct: 1281 AMIVGLAQHGNAEEA 1295
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 101/241 (41%), Gaps = 34/241 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + ++ + + +P W T+I G ++ ++ + M + V PD T+ L
Sbjct: 1158 GEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLV 1217
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA L E +HA K D F+ SL+ MY CG+I AR +F T
Sbjct: 1218 KACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIA 1277
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWN+M+ G A+ G A Q FEEM+ G
Sbjct: 1278 SWNAMIVGLAQHGNAEEALQ-------------------------------FFEEMKSRG 1306
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK--GLSLTLPLQTSLIDMYAKCGAIKE 248
+ VT + VL AC+H G + + Y + K G+ + + L+D ++ G I+E
Sbjct: 1307 VTPDRVTFIGVLSACSHSGLVSEAYENF-YSMQKIYGIEPEIEHYSCLVDALSRAGRIRE 1365
Query: 249 A 249
A
Sbjct: 1366 A 1366
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 37/238 (15%)
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
L HA+I +G+ D F++N+LI MY +
Sbjct: 644 LGKRAHARILTSGHHPDRFLTNNLITMY-------------------------------S 672
Query: 141 KCGEMNMARQVFELMPE--RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198
KCG ++ AR++F+ P+ R++V+W+A++ + ++ +F +R A TL
Sbjct: 673 KCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADKA--RDGFHLFRLLRRSFVSATRHTL 730
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
V C + + Y + GL + + +L+++YAK G I+EA ++F G+
Sbjct: 731 APVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGL 790
Query: 259 HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316
DV++WN M+ G E+L LF+E G+ PD++T L V+E
Sbjct: 791 R--DVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLE 846
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/385 (22%), Positives = 143/385 (37%), Gaps = 78/385 (20%)
Query: 17 CKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRL 76
++L+ +P F N +I YSK + + + LF +PD S L
Sbjct: 650 ARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLF------DTTPD---------TSRDL 694
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY----------AREVFDGMPT 126
++ HA A+ G+ + S + V+ A E G
Sbjct: 695 VTWNAILSAHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAV 754
Query: 127 KMSVSWNSMLDG-----YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
K+ + W+ + G YAK G + AR +F+ M R+VV W+ ++ YV G EAL+
Sbjct: 755 KIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALL 814
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241
+F E G + ++VTL C A + Q L Q + Y
Sbjct: 815 LFSEFNRTGLRPDDVTL----CTLARVVKSKQN--------------VLEWQLKQLKAYG 856
Query: 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
+ + + SDV+ WN + G E+++ F +M + D +TF
Sbjct: 857 -------TKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTF 909
Query: 302 LGLLSACA-----------HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVT 350
+ +LS A HG +V S+G C+++ + G V+
Sbjct: 910 VVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGN-----------CLINMYVKTGSVS 958
Query: 351 EAYEFICQMPLEPTASMLGSLLTGC 375
A QM E ++++GC
Sbjct: 959 RARTVFWQMN-EVDLVSWNTMISGC 982
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,765,085,344
Number of Sequences: 23463169
Number of extensions: 269105977
Number of successful extensions: 776055
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10240
Number of HSP's successfully gapped in prelim test: 1630
Number of HSP's that attempted gapping in prelim test: 577945
Number of HSP's gapped (non-prelim): 62192
length of query: 440
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 294
effective length of database: 8,933,572,693
effective search space: 2626470371742
effective search space used: 2626470371742
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 78 (34.7 bits)