BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039362
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RIM|A Chain A, Crystal Structure Of Rtt109
Length = 457
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFIC--QMPLEPTASMLGSLLTGCMNHGKLDLAE 385
G+VP+ H + D LS V+E +E++ +PLE A ++T + ++ +
Sbjct: 13 GLVPRGSHXXSLNDFLSSVLPVSEQFEYLSLQSIPLETHA-----VVTPNKDDKRVPKST 67
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
I + L H G+ VY WDEA R
Sbjct: 68 IKTQHFFSLF--HQGKVFFSLEVYVYVTLWDEADAER 102
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
P + +W ++ + Y K G+ + A ++ EL P N +W L + Y K GDY EA+
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN-NAEAWYNLGNAYYKQGDYDEAI 63
Query: 181 VIFEE 185
+++
Sbjct: 64 EYYQK 68
Score = 32.3 bits (72), Expect = 0.51, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 114 IVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDG 169
I Y ++ + P +W ++ + Y K G+ + A ++ EL P N +W L +
Sbjct: 29 IEYYQKALELYPNNAE-AWYNLGNAYYKQGDYDEAIEYYQKALELYPN-NAEAWYNLGNA 86
Query: 170 YVKCGDYKEALVIFEE 185
Y K GDY EA+ +++
Sbjct: 87 YYKQGDYDEAIEYYQK 102
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
P + +W ++ + Y K G+ A ++ EL P N +W L + Y K GDY++A+
Sbjct: 5 PGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN-NASAWYNLGNAYYKQGDYQKAI 63
Query: 181 VIFEE 185
+++
Sbjct: 64 EYYQK 68
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 131 SWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+W ++ + Y K G+ + A ++ EL P R+ +W L + Y K GDY EA+ +++
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 187 RDVGSKANE 195
++ ++ E
Sbjct: 62 LELDPRSAE 70
Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 131 SWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+W ++ + Y K G+ + A ++ EL P R+ +W L + Y K GDY EA+ +++
Sbjct: 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKA 95
Query: 187 RDVGSKANE 195
++ ++ E
Sbjct: 96 LELDPRSAE 104
Score = 31.6 bits (70), Expect = 0.82, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 131 SWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+W ++ + Y K G+ + A ++ EL P R+ +W L + Y K GDY EA+ +++
Sbjct: 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129
Query: 187 RDVGSKA 193
++ ++
Sbjct: 130 LELDPRS 136
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
P + +W ++ + Y K G+ + A ++ EL P N +W L + Y K GDY EA+
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAI 63
Query: 181 VIFEE 185
+++
Sbjct: 64 EYYQK 68
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 33.1 bits (74), Expect = 0.33, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
P + +W ++ + Y K G+ + A ++ EL P N +W L + Y K GDY EA+
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAI 63
Query: 181 VIFEE 185
+++
Sbjct: 64 EYYQK 68
Score = 32.0 bits (71), Expect = 0.74, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 131 SWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
+W ++ + Y K G+ + A ++ EL P N +W L + Y K GDY EA+ +++
Sbjct: 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQK 102
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 31.6 bits (70), Expect = 0.88, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 131 SWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+W ++ + Y K G+ + A ++ EL P R+ +W L + Y K GDY EA+ +++
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 187 RDVGSKA 193
++ ++
Sbjct: 64 LELDPRS 70
>pdb|3CV8|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84f Mutant)
Length = 412
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGL----LSACAHGGLVMEAWYFFKSLGKRGMV 330
+HGF+ E M G T D ++ L + C G+ FF+ KR +V
Sbjct: 130 VHGFLDE-------MLAAGPTADLVSQFALPVPSMVICRLLGVPYADHEFFQDASKR-LV 181
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKK 390
++ + + AG + I Q EP A ++G+L+ + +G++D E++
Sbjct: 182 QSTDAQSALTARNDLAGYLDG---LITQFQTEPGAGLVGALVADQLANGEIDREELISTA 238
Query: 391 LVELQPDHD 399
++ L H+
Sbjct: 239 MLLLIAGHE 247
>pdb|2ZBY|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84a Mutant)
pdb|2ZBZ|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84a Mutant) In Complex With
1,25-Dihydroxyvitamin D3
Length = 412
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGL----LSACAHGGLVMEAWYFFKSLGKRGMV 330
+HGF+ E M G T D ++ L + C G+ FF+ KR +V
Sbjct: 130 VHGFLDE-------MLAAGPTADLVSQFALPVPSMVICRLLGVPYADHEFFQDASKR-LV 181
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKK 390
++ + + AG + I Q EP A ++G+L+ + +G++D E++
Sbjct: 182 QSTDAQSALTARNDLAGYLDG---LITQFQTEPGAGLVGALVADQLANGEIDREELISTA 238
Query: 391 LVELQPDHD 399
++ L H+
Sbjct: 239 MLLLIAGHE 247
>pdb|3CV9|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R73aR84A MUTANT) IN COMPLEX WITH 1ALPHA,25-
Dihydroxyvitamin D3
Length = 412
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGL----LSACAHGGLVMEAWYFFKSLGKRGMV 330
+HGF+ E M G T D ++ L + C G+ FF+ KR +V
Sbjct: 130 VHGFLDE-------MLAAGPTADLVSQFALPVPSMVICRLLGVPYADHEFFQDASKR-LV 181
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKK 390
++ + + AG + I Q EP A ++G+L+ + +G++D E++
Sbjct: 182 QSTDAQSALTARNDLAGYLDG---LITQFQTEPGAGLVGALVADQLANGEIDREELISTA 238
Query: 391 LVELQPDHD 399
++ L H+
Sbjct: 239 MLLLIAGHE 247
>pdb|2ZBX|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (Wild Type) With Imidazole Bound
Length = 412
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGL----LSACAHGGLVMEAWYFFKSLGKRGMV 330
+HGF+ E M G T D ++ L + C G+ FF+ KR +V
Sbjct: 130 VHGFLDE-------MLAAGPTADLVSQFALPVPSMVICRLLGVPYADHEFFQDASKR-LV 181
Query: 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKK 390
++ + + AG + I Q EP A ++G+L+ + +G++D E++
Sbjct: 182 QSTDAQSALTARNDLAGYLDG---LITQFQTEPGAGLVGALVADQLANGEIDREELISTA 238
Query: 391 LVELQPDHD 399
++ L H+
Sbjct: 239 MLLLIAGHE 247
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 250 LIVFHGVEKHQSDVL---IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
L+V HG ++ + +L ++NA++ G A G KE + + ++ G+TPD +++ L
Sbjct: 150 LVVHHG-QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,913,344
Number of Sequences: 62578
Number of extensions: 513105
Number of successful extensions: 1170
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1153
Number of HSP's gapped (non-prelim): 31
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)