BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039362
(440 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 558 bits (1438), Expect = e-158, Method: Compositional matrix adjust.
Identities = 269/440 (61%), Positives = 349/440 (79%), Gaps = 1/440 (0%)
Query: 2 LSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP 61
LSFSALS G++DY+ K LS LS+P + WN VIRG+S S+NP KSIS++++MLR G+ P
Sbjct: 47 LSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLP 106
Query: 62 DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121
DH+TYPFL K+S RL+ R+L ++H + K+G E DLFI N+LIHMYGS D AR++F
Sbjct: 107 DHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLF 166
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
D MP K V+WNS+LD YAK G++ AR VF+ M ER+VV+WS++IDGYVK G+Y +AL
Sbjct: 167 DEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALE 226
Query: 182 IFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
IF++M +GS KANEVT+VSV+CACAHLGAL++G+ + RY++D L LT+ LQTSLIDMY
Sbjct: 227 IFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMY 286
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
AKCG+I +A VF+ ++D L+WNA+IGGLA HGF++ESL+LF +M+ I PDEIT
Sbjct: 287 AKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEIT 346
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360
FL LL+AC+HGGLV EAW+FFKSL + G PKSEHYACMVD LSRAG V +A++FI +MP
Sbjct: 347 FLCLLAACSHGGLVKEAWHFFKSLKESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMP 406
Query: 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420
++PT SMLG+LL GC+NHG L+LAE VGKKL+ELQP +DGRYVGL+NVYAI K++ AR+
Sbjct: 407 IKPTGSMLGALLNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARS 466
Query: 421 TREAMETRGVKKYPGWSFVE 440
REAME +GVKK G S ++
Sbjct: 467 MREAMEKKGVKKIAGHSILD 486
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 171/429 (39%), Positives = 282/429 (65%), Gaps = 3/429 (0%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+ Y+ + S + NP +F +N +IR +S P+K+ + +ML++ + PD++T+PFL KA
Sbjct: 67 LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 126
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
S + + H+QI + G+++D+++ NSL+HMY +CG I A +F M + VSW
Sbjct: 127 SSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSW 186
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
SM+ GY KCG + AR++F+ MP RN+ +WS +I+GY K +++A+ +FE M+ G
Sbjct: 187 TSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV 246
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
ANE +VSV+ +CAHLGAL+ G Y++ +++ L L T+L+DM+ +CG I++A+ V
Sbjct: 247 ANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHV 306
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F G+ ++D L W+++I GLA+HG +++ F++M +G P ++TF +LSAC+HGG
Sbjct: 307 FEGLP--ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGG 364
Query: 313 LVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
LV + ++++ K G+ P+ EHY C+VD L RAG++ EA FI +M ++P A +LG+L
Sbjct: 365 LVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGAL 424
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
L C + ++AE VG L++++P+H G YV LSN+YA +WD+ + R+ M+ + VK
Sbjct: 425 LGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVK 484
Query: 432 KYPGWSFVE 440
K PGWS +E
Sbjct: 485 KPPGWSLIE 493
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 32/240 (13%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ++ + ++ + + +F W+ +I GY+K+ K+I LF M R GV + +
Sbjct: 197 GMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVI 256
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ L E + + K+ +L + +L+ M+ CGDI A VF+G+P S+
Sbjct: 257 SSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSL 316
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW+S++ G A G + +A+ F +M +G
Sbjct: 317 SWSSIIKGLAVHGHAH-------------------------------KAMHYFSQMISLG 345
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
+VT +VL AC+H G +++G + M D G+ L ++DM + G + EA
Sbjct: 346 FIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEA 405
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I+ + V L W+++I+G + + +K++ F +M+ G P +T+ +
Sbjct: 298 GDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVL 357
Query: 71 KASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
A E + ++ + K G E L ++ M G G + A M K
Sbjct: 358 SACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVK 415
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 345 bits (886), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 177/428 (41%), Positives = 259/428 (60%), Gaps = 3/428 (0%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+ Y+ V P F WN +IRG+S S P +S+ L+ +ML + + T+P L KA
Sbjct: 65 LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKA 124
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
L+ E +HAQI K GYE+D++ NSLI+ Y G+ A +FD +P VSW
Sbjct: 125 CSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSW 184
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
NS++ GY K G+M++A +F M E+N +SW+ +I GYV+ KEAL +F EM++ +
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE 244
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ V+L + L ACA LGAL+QG+ + Y+ + + L LIDMYAKCG ++EAL V
Sbjct: 245 PDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEV 304
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F ++K V W A+I G A HG +E++ F EMQ +GI P+ ITF +L+AC++ G
Sbjct: 305 FKNIKK--KSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTG 362
Query: 313 LVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371
LV E F S+ + + P EHY C+VD L RAG + EA FI +MPL+P A + G+L
Sbjct: 363 LVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGAL 422
Query: 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431
L C H ++L E +G+ L+ + P H GRYV +N++A+ K+WD+A TR M+ +GV
Sbjct: 423 LKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVA 482
Query: 432 KYPGWSFV 439
K PG S +
Sbjct: 483 KVPGCSTI 490
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 130/319 (40%), Gaps = 68/319 (21%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-------------- 56
GN + + + P WN+VI+GY K+ + +++LF KM
Sbjct: 164 GNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYV 223
Query: 57 -----------------AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99
+ V PD+++ A +L E +H+ + KT D
Sbjct: 224 QADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV 283
Query: 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERN 159
+ LI MY CG++ A EVF + K +W
Sbjct: 284 LGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAW--------------------------- 316
Query: 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLR 219
+ALI GY G +EA+ F EM+ +G K N +T +VL AC++ G +++G+++
Sbjct: 317 ----TALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFY 372
Query: 220 YM-IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGF 278
M D L T+ ++D+ + G + EA + + + +IW A++ +H
Sbjct: 373 SMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPL-KPNAVIWGALLKACRIH-- 429
Query: 279 VKESLELFTEMQIVGITPD 297
+++EL E+ + I D
Sbjct: 430 --KNIELGEEIGEILIAID 446
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 136/312 (43%), Gaps = 14/312 (4%)
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIH--MYGSCGDIV-YAREVFDGMPTKMSVS 131
R +K+E +HA++ KTG D + + + + D + YA+ VFDG +
Sbjct: 23 RCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFL 82
Query: 132 WNSMLDGYAKCGEMNMARQVFELM----PERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
WN M+ G++ E + +++ M N ++ +L+ ++E I ++
Sbjct: 83 WNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQIT 142
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
+G + + + S++ + A G ++ D+ S+I Y K G +
Sbjct: 143 KLGYENDVYAVNSLINSYAVTGNFKLAHLLF----DRIPEPDDVSWNSVIKGYVKAGKMD 198
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
AL +F + + + + W MI G KE+L+LF EMQ + PD ++ LSA
Sbjct: 199 IALTLFRKMA--EKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSA 256
Query: 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
CA G + + + L K + S ++D ++ G++ EA E + + +
Sbjct: 257 CAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIK-KKSVQA 315
Query: 368 LGSLLTGCMNHG 379
+L++G HG
Sbjct: 316 WTALISGYAYHG 327
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 343 bits (881), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 176/468 (37%), Positives = 269/468 (57%), Gaps = 34/468 (7%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHL 64
A+S + Y+ ++L P F +NT++RGYS+S P+ S+++FV+M+R G V PD
Sbjct: 48 AISISDALPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSF 107
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG------------ 112
++ F+ KA +H Q K G ES LF+ +LI MYG CG
Sbjct: 108 SFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEM 167
Query: 113 -------------------DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFE 153
D+ ARE+FD M + SWN ML GY K GE+ A+++F
Sbjct: 168 HQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFS 227
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
MP R+ VSWS +I G G + E+ + F E++ G NEV+L VL AC+ G+ +
Sbjct: 228 EMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEF 287
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
G+++ ++ G S + + +LIDMY++CG + A +VF G+++ + ++ W +MI GL
Sbjct: 288 GKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRC-IVSWTSMIAGL 346
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PK 332
AMHG +E++ LF EM G+TPD I+F+ LL AC+H GL+ E +F + + + P+
Sbjct: 347 AMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPE 406
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV 392
EHY CMVD R+G++ +AY+FICQMP+ PTA + +LL C +HG ++LAE V ++L
Sbjct: 407 IEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLN 466
Query: 393 ELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
EL P++ G V LSN YA +W + + R++M + +KK WS VE
Sbjct: 467 ELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVE 514
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 340 bits (871), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 167/432 (38%), Positives = 266/432 (61%), Gaps = 4/432 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D +CKV + + + WN++I G+ + +P+K++ LF KM V H+T +
Sbjct: 180 GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 239
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A ++ E V + I + +L ++N+++ MY CG I A+ +FD M K +V
Sbjct: 240 SACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNV 299
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DV 189
+W +MLDGYA + AR+V MP++++V+W+ALI Y + G EAL++F E++
Sbjct: 300 TWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQK 359
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
K N++TLVS L ACA +GAL+ GR + Y+ G+ + + ++LI MY+KCG ++++
Sbjct: 360 NMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKS 419
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
VF+ VEK DV +W+AMIGGLAMHG E++++F +MQ + P+ +TF + AC+
Sbjct: 420 REVFNSVEKR--DVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACS 477
Query: 310 HGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV EA F + G+VP+ +HYAC+VD L R+G + +A +FI MP+ P+ S+
Sbjct: 478 HTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVW 537
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
G+LL C H L+LAE+ +L+EL+P +DG +V LSN+YA +W+ R+ M
Sbjct: 538 GALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVT 597
Query: 429 GVKKYPGWSFVE 440
G+KK PG S +E
Sbjct: 598 GLKKEPGCSSIE 609
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 199/414 (48%), Gaps = 66/414 (15%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-RAGV 59
+ + +ALS +++Y+ KV + P F WNT+IR Y+ +P SI F+ M+ +
Sbjct: 68 LFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQC 127
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T+PFL KA+ ++ L ++H K+ SD+F++NSLIH Y SCGD+ A +
Sbjct: 128 YPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACK 187
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VF + K VSWNSM++G +V+ G +A
Sbjct: 188 VFTTIKEKDVVSWNSMING-------------------------------FVQKGSPDKA 216
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F++M KA+ VT+V VL ACA + L+ GR + Y+ + +++ L L +++DM
Sbjct: 217 LELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDM 276
Query: 240 YAKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNAMI 270
Y KCG+I++A +F +E+ Q D++ WNA+I
Sbjct: 277 YTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALI 336
Query: 271 GGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329
+G E+L +F E+Q+ + ++IT + LSACA G + + + K G+
Sbjct: 337 SAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGI 396
Query: 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT---ASMLGSL-LTGCMNHG 379
+ ++ S+ G + ++ E + ++M+G L + GC N
Sbjct: 397 RMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEA 450
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 7/191 (3%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+++ S +V + + +F W+ +I G + N+++ +F KM A V P+ +T+
Sbjct: 411 SKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFT 470
Query: 68 FLAKASGRLAKRELAVAVHAQI-AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A + A ++ Q+ + G + ++ + G G + A + + MP
Sbjct: 471 NVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPI 530
Query: 127 KMSVS-WNSMLDGYAKCGEMNMAR----QVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
S S W ++L +N+A ++ EL P RN + L + Y K G ++
Sbjct: 531 PPSTSVWGALLGACKIHANLNLAEMACTRLLELEP-RNDGAHVLLSNIYAKLGKWENVSE 589
Query: 182 IFEEMRDVGSK 192
+ + MR G K
Sbjct: 590 LRKHMRVTGLK 600
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 333 bits (854), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 175/432 (40%), Positives = 269/432 (62%), Gaps = 5/432 (1%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML--RAGVSPDHLTYPFL 69
+++Y+ V + +++ F WNT+IRG+S+S P +IS+F+ ML V P LTYP +
Sbjct: 73 DMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSV 132
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
KA GRL + +H + K G E D FI N+++HMY +CG ++ A +F GM
Sbjct: 133 FKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDV 192
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
V+WNSM+ G+AKCG ++ A+ +F+ MP+RN VSW+++I G+V+ G +K+AL +F EM++
Sbjct: 193 VAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEK 252
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
K + T+VS+L ACA+LGA +QGR + Y++ L + T+LIDMY KCG I+E
Sbjct: 253 DVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEG 312
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
L VF K Q + WN+MI GLA +GF + +++LF+E++ G+ PD ++F+G+L+ACA
Sbjct: 313 LNVFECAPKKQ--LSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACA 370
Query: 310 HGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H G V A FF+ + ++ M+ P +HY MV+ L AG + EA I MP+E +
Sbjct: 371 HSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIW 430
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
SLL+ C G +++A+ K L +L PD YV LSN YA + ++EA R M+ R
Sbjct: 431 SSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKER 490
Query: 429 GVKKYPGWSFVE 440
++K G S +E
Sbjct: 491 QMEKEVGCSSIE 502
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 129/309 (41%), Gaps = 36/309 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G ID + + + WN++I G+ ++ ++ +F +M V PD T L
Sbjct: 206 GLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLL 265
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L E +H I + +E + + +LI MY CG I VF+ P K
Sbjct: 266 NACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLS 325
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
WNSM+ G A G FE + A+ +F E+ G
Sbjct: 326 CWNSMILGLANNG--------FE-----------------------ERAMDLFSELERSG 354
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
+ + V+ + VL ACAH G + + R M +K + ++ T ++++ G ++EA
Sbjct: 355 LEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEA 414
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS-AC 308
+ + + D +IW++++ G V+ + ++ + PDE LLS A
Sbjct: 415 EALIKNMPVEE-DTVIWSSLLSACRKIGNVEMAKRAAKCLK--KLDPDETCGYVLLSNAY 471
Query: 309 AHGGLVMEA 317
A GL EA
Sbjct: 472 ASYGLFEEA 480
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 34/291 (11%)
Query: 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGSKANEVT 197
A +MN A VF + +N W+ +I G+ + + A+ IF +M K +T
Sbjct: 69 ASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLT 128
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV- 256
SV A LG GR + +I +GL ++ +++ MY CG + EA +F G+
Sbjct: 129 YPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMI 188
Query: 257 ----------------------------EKHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288
E Q + + WN+MI G +G K++L++F E
Sbjct: 189 GFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFRE 248
Query: 289 MQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQ 348
MQ + PD T + LL+ACA+ G + + + + + S ++D + G
Sbjct: 249 MQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGC 308
Query: 349 VTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVE--LQPD 397
+ E P + S S++ G N+G + A + +L L+PD
Sbjct: 309 IEEGLNVFECAP-KKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPD 358
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 333 bits (853), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 180/422 (42%), Positives = 254/422 (60%), Gaps = 11/422 (2%)
Query: 29 FYWNTVIRGYS---KSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAV 85
F WN +IR S + IS++++M VSPD T+PFL + L
Sbjct: 25 FLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRT 84
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
HAQI G + D F+ SL++MY SCGD+ A+ VFD +K +WNS+++ YAK G +
Sbjct: 85 HAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLI 144
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-----DVGSKANEVTLVS 200
+ AR++F+ MPERNV+SWS LI+GYV CG YKEAL +F EM+ + + NE T+ +
Sbjct: 145 DDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMST 204
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
VL AC LGAL+QG+ + Y+ + + + L T+LIDMYAKCG+++ A VF+ + +
Sbjct: 205 VLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGS-K 263
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACAHGGLVMEAWY 319
DV ++AMI LAM+G E +LF+EM I P+ +TF+G+L AC H GL+ E
Sbjct: 264 KDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKS 323
Query: 320 FFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNH 378
+FK + + G+ P +HY CMVD R+G + EA FI MP+EP + GSLL+G
Sbjct: 324 YFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRML 383
Query: 379 GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSF 438
G + E K+L+EL P + G YV LSNVYA RW E + R ME +G+ K PG S+
Sbjct: 384 GDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSY 443
Query: 439 VE 440
VE
Sbjct: 444 VE 445
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 38/283 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML-----RAGV 59
+A + G ID + K+ + + W+ +I GY +++ LF +M A V
Sbjct: 136 NAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFV 195
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T + A GRL E VHA I K E D+ + +LI MY CG + A+
Sbjct: 196 RPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKR 255
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VF+ + +K ++V ++SA+I G E
Sbjct: 256 VFNALGSK------------------------------KDVKAYSAMICCLAMYGLTDEC 285
Query: 180 LVIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLI 237
+F EM + N VT V +L AC H G +++G+ + MI++ G++ ++ ++
Sbjct: 286 FQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMV 345
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
D+Y + G IKEA F + DVLIW +++ G M G +K
Sbjct: 346 DLYGRSGLIKEAE-SFIASMPMEPDVLIWGSLLSGSRMLGDIK 387
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 333 bits (853), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 172/431 (39%), Positives = 255/431 (59%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+++ + KV + WN +I GY K K+I ++ M GV PD +T L
Sbjct: 205 GDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLV 264
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
+ L + + + G + + N+L+ M+ CGDI AR +FD + + V
Sbjct: 265 SSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIV 324
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW +M+ GYA+CG ++++R++F+ M E++VV W+A+I G V+ ++AL +F+EM+
Sbjct: 325 SWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSN 384
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+K +E+T++ L AC+ LGALD G + RY+ LSL + L TSL+DMYAKCG I EAL
Sbjct: 385 TKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEAL 444
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VFHG++ S L + A+IGGLA+HG ++ F EM GI PDEITF+GLLSAC H
Sbjct: 445 SVFHGIQTRNS--LTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCH 502
Query: 311 GGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GG++ +F + R + P+ +HY+ MVD L RAG + EA + MP+E A++ G
Sbjct: 503 GGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWG 562
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
+LL GC HG ++L E KKL+EL P G YV L +Y W++A+ R M RG
Sbjct: 563 ALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERG 622
Query: 430 VKKYPGWSFVE 440
V+K PG S +E
Sbjct: 623 VEKIPGCSSIE 633
Score = 213 bits (541), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 189/384 (49%), Gaps = 63/384 (16%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV- 59
+++F ALS +DYS K+L + NP IF WN IRG+S+S+NP +S L+ +MLR G
Sbjct: 91 LIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCC 150
Query: 60 --SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYA 117
PDH TYP L K L L + + K E + N+ IHM+ SCGD+ A
Sbjct: 151 ESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENA 210
Query: 118 REVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYK 177
R+VFD P + VSWN +++GY K GE A V++LM
Sbjct: 211 RKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESE------------------- 251
Query: 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
G K ++VT++ ++ +C+ LG L++G+ Y+ + GL +T+PL +L+
Sbjct: 252 ------------GVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALM 299
Query: 238 DMYAKCGAIKEALIVFHGVEKH-----------------------------QSDVLIWNA 268
DM++KCG I EA +F +EK + DV++WNA
Sbjct: 300 DMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNA 359
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328
MIGG +++L LF EMQ PDEIT + LSAC+ G + + + + K
Sbjct: 360 MIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYS 419
Query: 329 MVPKSEHYACMVDALSRAGQVTEA 352
+ +VD ++ G ++EA
Sbjct: 420 LSLNVALGTSLVDMYAKCGNISEA 443
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 123/278 (44%), Gaps = 33/278 (11%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
S + G +D S K+ + + WN +I G ++K +++LF +M + PD
Sbjct: 330 ISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDE 389
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
+T A +L ++ + +H I K ++ + SL+ MY CG+I A VF G
Sbjct: 390 ITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHG 449
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+ T+ S+ +++A+I G GD A+ F
Sbjct: 450 IQTRNSL-------------------------------TYTAIIGGLALHGDASTAISYF 478
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAK 242
EM D G +E+T + +L AC H G + GR M + L+ L + ++D+ +
Sbjct: 479 NEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGR 538
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
G ++EA + + ++D +W A++ G MHG V+
Sbjct: 539 AGLLEEADRLMESMPM-EADAAVWGALLFGCRMHGNVE 575
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 325 bits (832), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 164/431 (38%), Positives = 257/431 (59%), Gaps = 4/431 (0%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS-PDHLTYPFLA 70
++DY+ ++ + +SNP +F +N++IR Y+ + I ++ ++LR PD T+PF+
Sbjct: 57 DMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMF 116
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
K+ L L VH + K G + N+LI MY D+V A +VFD M + +
Sbjct: 117 KSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVI 176
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS+L GYA+ G+M A+ +F LM ++ +VSW+A+I GY G Y EA+ F EM+ G
Sbjct: 177 SWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAG 236
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ +E++L+SVL +CA LG+L+ G+ + Y +G + +LI+MY+KCG I +A+
Sbjct: 237 IEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAI 296
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F +E DV+ W+ MI G A HG ++E F EMQ + P+ ITFLGLLSAC+H
Sbjct: 297 QLFGQMEG--KDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSH 354
Query: 311 GGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
G+ E +F + + + PK EHY C++D L+RAG++ A E MP++P + + G
Sbjct: 355 VGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWG 414
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SLL+ C G LD+A + LVEL+P+ G YV L+N+YA +W++ R+ +
Sbjct: 415 SLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNEN 474
Query: 430 VKKYPGWSFVE 440
+KK PG S +E
Sbjct: 475 MKKTPGGSLIE 485
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 87/192 (45%), Gaps = 9/192 (4%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G I + ++ + + W+T+I GY+ N + +I F +M RA V P+ +T+
Sbjct: 287 SKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFL 346
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISN--SLIHMYGSCGDIVYAREVFDGMP 125
L A + + + + + + Y+ + I + LI + G + A E+ MP
Sbjct: 347 GLLSACSHVGMWQEGLR-YFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMP 405
Query: 126 TKM-SVSWNSMLDGYAKCGEMNMA----RQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
K S W S+L G +++A + EL PE ++ ++ L + Y G +++
Sbjct: 406 MKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPE-DMGNYVLLANIYADLGKWEDVS 464
Query: 181 VIFEEMRDVGSK 192
+ + +R+ K
Sbjct: 465 RLRKMIRNENMK 476
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 323 bits (827), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 174/473 (36%), Positives = 271/473 (57%), Gaps = 40/473 (8%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
++LS G + Y+ K+ + P + N V+RG ++S P K++SL+ +M + GVSPD
Sbjct: 54 ASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRY 113
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T+ F+ KA +L R A H ++ + G+ + ++ N+LI + +CGD+ A E+FD
Sbjct: 114 TFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDS 173
Query: 125 PTKMSVSWNSMLDGYA-------------------------------KCGEMNMARQVFE 153
V+W+SM GYA KC EM+ AR++F+
Sbjct: 174 AKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFD 233
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
E++VV+W+A+I GYV CG KEAL IF+EMRD G + VT++S+L ACA LG L+
Sbjct: 234 RFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLET 293
Query: 214 GRMMLRYMIDKG-----LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
G+ + Y+++ + + P+ +LIDMYAKCG+I A+ VF GV+ D+ WN
Sbjct: 294 GKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVK--DRDLSTWNT 351
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR- 327
+I GLA+H + S+E+F EMQ + + P+E+TF+G++ AC+H G V E +F +
Sbjct: 352 LIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMY 410
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ P +HY CMVD L RAGQ+ EA+ F+ M +EP A + +LL C +G ++L +
Sbjct: 411 NIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYA 470
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+KL+ ++ D G YV LSN+YA +WD + R+ + VKK G S +E
Sbjct: 471 NEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIE 523
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 320 bits (821), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 166/434 (38%), Positives = 255/434 (58%), Gaps = 3/434 (0%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G +D + V +F WN +I GY++ K +SI L V+M R VSP +T
Sbjct: 181 SLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLL 240
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ A ++ ++L VH +++ E L + N+L++ Y +CG++ A +F M +
Sbjct: 241 LVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKAR 300
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
+SW S++ GY + G + +AR F+ MP R+ +SW+ +IDGY++ G + E+L IF EM+
Sbjct: 301 DVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQ 360
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
G +E T+VSVL ACAHLG+L+ G + Y+ + + + +LIDMY KCG +
Sbjct: 361 SAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSE 420
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
+A VFH ++ Q D W AM+ GLA +G +E++++F +MQ + I PD+IT+LG+LSA
Sbjct: 421 KAQKVFHDMD--QRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSA 478
Query: 308 CAHGGLVMEAWYFF-KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C H G+V +A FF K + P HY CMVD L RAG V EAYE + +MP+ P +
Sbjct: 479 CNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSI 538
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ G+LL H +AE+ KK++EL+PD+ Y L N+YA KRW + R R +
Sbjct: 539 VWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIV 598
Query: 427 TRGVKKYPGWSFVE 440
+KK PG+S +E
Sbjct: 599 DVAIKKTPGFSLIE 612
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 191/455 (41%), Gaps = 104/455 (22%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPF-- 68
G++ Y+ K+ + P + WN +I+G+SK + + L++ ML+ GV+PD T+PF
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 69 --LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
L + G LA +H + K G S+L++ N+L+ MY CG + AR VFD
Sbjct: 142 NGLKRDGGALA---CGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCK 198
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ SWN M+ GY + E Y+E++ + EM
Sbjct: 199 EDVFSWNLMISGYNRMKE-------------------------------YEESIELLVEM 227
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
VTL+ VL AC+ + D + + Y+ + +L L+ +L++ YA CG +
Sbjct: 228 ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEM 287
Query: 247 KEALIVFHGVEKHQ-----------------------------SDVLIWNAMIGGLAMHG 277
A+ +F ++ D + W MI G G
Sbjct: 288 DIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAG 347
Query: 278 FVKESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAW---YFFKSLGKRGMVPKS 333
ESLE+F EMQ G+ PDE T + +L+ACAH G L + W Y K+ K +V +
Sbjct: 348 CFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGN 407
Query: 334 E----HYAC-----------------------MVDALSRAGQVTEAYEFICQ---MPLEP 363
++ C MV L+ GQ EA + Q M ++P
Sbjct: 408 ALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQP 467
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398
+L+ C + G +D A K +++ DH
Sbjct: 468 DDITYLGVLSACNHSGMVDQAR---KFFAKMRSDH 499
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 137/333 (41%), Gaps = 66/333 (19%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKN-----------P--------- 44
+A + G +D + ++ + + W ++++GY + N P
Sbjct: 279 NAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTI 338
Query: 45 -----------NKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTG 93
N+S+ +F +M AG+ PD T + A L E+ + I K
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNK 398
Query: 94 YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFE 153
++D+ + N+LI MY CG A++VF M + +W +M+ G A G+
Sbjct: 399 IKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQG-------- 450
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
+EA+ +F +M+D+ + +++T + VL AC H G +DQ
Sbjct: 451 -----------------------QEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQ 487
Query: 214 GRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272
R M D + +L ++DM + G +KEA + + + + + +W A++G
Sbjct: 488 ARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSI-VWGALLGA 546
Query: 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
+H E + +I+ + PD LL
Sbjct: 547 SRLHN--DEPMAELAAKKILELEPDNGAVYALL 577
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 320 bits (820), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 166/438 (37%), Positives = 266/438 (60%), Gaps = 5/438 (1%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG--VSPDH 63
ALS +DY+ ++L P +F N++IR + KS P KS + ++L +G + PD+
Sbjct: 49 ALSDHKYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDN 108
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T FL +A L RE + VH + G+++D + LI +Y G + +VF+
Sbjct: 109 YTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNS 168
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
+P V +M+ A+CG++ AR++FE MPER+ ++W+A+I GY + G+ +EAL +F
Sbjct: 169 IPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVF 228
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
M+ G K N V ++SVL AC LGALDQGR Y+ + +T+ L T+L+D+YAKC
Sbjct: 229 HLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKC 288
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G +++A+ VF G+E + +V W++ + GLAM+GF ++ LELF+ M+ G+TP+ +TF+
Sbjct: 289 GDMEKAMEVFWGME--EKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVS 346
Query: 304 LLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+L C+ G V E F S+ G+ P+ EHY C+VD +RAG++ +A I QMP++
Sbjct: 347 VLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMK 406
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P A++ SLL + L+L + KK++EL+ + G YV LSN+YA WD R
Sbjct: 407 PHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVR 466
Query: 423 EAMETRGVKKYPGWSFVE 440
++M+++GV+K PG S +E
Sbjct: 467 QSMKSKGVRKQPGCSVME 484
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 129/282 (45%), Gaps = 37/282 (13%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A + G++ ++ K+ + WN +I GY++ +++++F M GV + +
Sbjct: 182 TACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGV 241
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
+ A +L + H+ I + + + ++ +L+ +Y CGD+ A EVF GM
Sbjct: 242 AMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGM 301
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
K +W+S L+G A MN G ++ L +F
Sbjct: 302 EEKNVYTWSSALNGLA----MN---------------------------GFGEKCLELFS 330
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKC 243
M+ G N VT VSVL C+ +G +D+G+ M ++ G+ L L+D+YA+
Sbjct: 331 LMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARA 390
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLEL 285
G +++A+ + + + +W++++ M+ ++LEL
Sbjct: 391 GRLEDAVSIIQQMPM-KPHAAVWSSLLHASRMY----KNLEL 427
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 318 bits (814), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 172/443 (38%), Positives = 258/443 (58%), Gaps = 8/443 (1%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNK---SISLFVKMLRAGVS 60
A S G++ Y+ V +H P + NT+IR S PN +I+++ K+
Sbjct: 54 IEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLWALCAK 113
Query: 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
PD T+PF+ K + R++ +H Q+ G++S + + LI MY SCG + AR++
Sbjct: 114 PDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKM 173
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDYKE 178
FD M K WN++L GY K GEM+ AR + E+MP RN VSW+ +I GY K G E
Sbjct: 174 FDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASE 233
Query: 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
A+ +F+ M + +EVTL++VL ACA LG+L+ G + Y+ +G++ + L ++ID
Sbjct: 234 AIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVID 293
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MYAK G I +AL VF V ++ +V+ W +I GLA HG E+L +F M G+ P++
Sbjct: 294 MYAKSGNITKALDVFECV--NERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPND 351
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
+TF+ +LSAC+H G V F S+ K G+ P EHY CM+D L RAG++ EA E I
Sbjct: 352 VTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIK 411
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
MP + A++ GSLL H L+L E +L++L+P++ G Y+ L+N+Y+ RWDE
Sbjct: 412 SMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDE 471
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
+R R M+ GVKK G S +E
Sbjct: 472 SRMMRNMMKGIGVKKMAGESSIE 494
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 313 bits (801), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 167/432 (38%), Positives = 260/432 (60%), Gaps = 37/432 (8%)
Query: 13 IDYSCKVLSHLSNP-RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFLA 70
+ Y+ KV S + P +F WNT+IRGY++ N + SL+ +M +G V PD TYPFL
Sbjct: 69 MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA +A L +H+ + ++G+ S +++ NSL+H+Y
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLY---------------------- 166
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
A CG++ A +VF+ MPE+++V+W+++I+G+ + G +EAL ++ EM G
Sbjct: 167 ---------ANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKG 217
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K + T+VS+L ACA +GAL G+ + YMI GL+ L L+D+YA+CG ++EA
Sbjct: 218 IKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAK 277
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACA 309
+F E + + W ++I GLA++GF KE++ELF M+ G+ P EITF+G+L AC+
Sbjct: 278 TLFD--EMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335
Query: 310 HGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H G+V E + +F+ + + + P+ EH+ CMVD L+RAGQV +AYE+I MP++P +
Sbjct: 336 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 395
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+LL C HG DLAE ++++L+P+H G YV LSN+YA +RW + + R+ M
Sbjct: 396 RTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD 455
Query: 429 GVKKYPGWSFVE 440
GVKK PG S VE
Sbjct: 456 GVKKVPGHSLVE 467
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 133/288 (46%), Gaps = 34/288 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + KV + + WN+VI G++++ P ++++L+ +M G+ PD T L
Sbjct: 170 GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLL 229
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A ++ L VH + K G +L SN L+ +Y CG + A+ +FD M K SV
Sbjct: 230 SACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSV 289
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SW S++ G A G A ++F+ M +G + C
Sbjct: 290 SWTSLIVGLAVNGFGKEAIELFKYMES---------TEGLLPC----------------- 323
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEA 249
E+T V +L AC+H G + +G R M ++ + + ++D+ A+ G +K+A
Sbjct: 324 ----EITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKA 379
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
+ Q +V+IW ++G +HG L F +QI+ + P+
Sbjct: 380 YEYIKSMPM-QPNVVIWRTLLGACTVHG--DSDLAEFARIQILQLEPN 424
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 308 bits (790), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 173/436 (39%), Positives = 259/436 (59%), Gaps = 8/436 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
LGN + KV + + +P + +N +I GY+K +++ L+ KM+ G+ PD T L
Sbjct: 179 LGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSL 238
Query: 70 AKASGRLAKRELAVAVHAQIAKTG--YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
G L+ L VH I + G Y S+L +SN+L+ MY C + A+ FD M K
Sbjct: 239 LVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKK 298
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCG-DYKEALVIFEEM 186
SWN+M+ G+ + G+M A+ VF+ MP+R++VSW++L+ GY K G D + +F EM
Sbjct: 299 DMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEM 358
Query: 187 RDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
V K + VT+VS++ A+ G L GR + +I L L ++LIDMY KCG
Sbjct: 359 TIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGI 418
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305
I+ A +VF + DV +W +MI GLA HG +++L+LF MQ G+TP+ +T L +L
Sbjct: 419 IERAFMVFKTAT--EKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVL 476
Query: 306 SACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQ-MPLEP 363
+AC+H GLV E + F + K G P++EHY +VD L RAG+V EA + + + MP+ P
Sbjct: 477 TACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRP 536
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ SM GS+L+ C ++ AE+ +L++L+P+ +G YV LSN+YA RW + TRE
Sbjct: 537 SQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTRE 596
Query: 424 AMETRGVKKYPGWSFV 439
AME RGVKK G+S V
Sbjct: 597 AMENRGVKKTAGYSSV 612
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 109/416 (26%), Positives = 190/416 (45%), Gaps = 74/416 (17%)
Query: 1 MLSFSALSYLGNIDYS-CKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
++ FSA++Y N+D + L+ NP +F +NT+I S SKN + L+ M+R V
Sbjct: 72 LIFFSAITYPENLDLAKLLFLNFTPNPNVFVYNTMISAVSSSKN--ECFGLYSSMIRHRV 129
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
SPD T+ +L KAS L++ + +H I +G L + N L
Sbjct: 130 SPDRQTFLYLMKASSFLSEVK---QIHCHIIVSGC---LSLGNYL--------------- 168
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
WNS++ Y + G +A +VF MP +V S++ +I GY K G EA
Sbjct: 169 ------------WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEA 216
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG--LSLTLPLQTSLI 237
L ++ +M G + +E T++S+L C HL + G+ + ++ +G S L L +L+
Sbjct: 217 LKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALL 276
Query: 238 DMYAKC-------------------------------GAIKEALIVFHGVEKHQSDVLIW 266
DMY KC G ++ A VF + K D++ W
Sbjct: 277 DMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKR--DLVSW 334
Query: 267 NAMIGGLAMHGFVKESL-ELFTEMQIV-GITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
N+++ G + G + ++ ELF EM IV + PD +T + L+S A+ G + + +
Sbjct: 335 NSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLV 394
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGK 380
+ + + + ++D + G + A+ + + E ++ S++TG HG
Sbjct: 395 IRLQLKGDAFLSSALIDMYCKCGIIERAF-MVFKTATEKDVALWTSMITGLAFHGN 449
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 255/434 (58%), Gaps = 4/434 (0%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
+ N+ Y+ K+ H N F +N +I+ Y P++SI L+ + G+ P H T+ F+
Sbjct: 29 IPNLVYARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFI 88
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
AS + +H+Q ++G+ESD F +LI Y G + AR VFD M +
Sbjct: 89 FAASASFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDV 148
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RD 188
WN+M+ GY + G+M A ++F+ MP +NV SW+ +I G+ + G+Y EAL +F M +D
Sbjct: 149 PVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKD 208
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
K N +T+VSVL ACA+LG L+ GR + Y + G + + + I+MY+KCG I
Sbjct: 209 KSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDV 268
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
A +F + +Q ++ WN+MIG LA HG E+L LF +M G PD +TF+GLL AC
Sbjct: 269 AKRLFEEL-GNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLAC 327
Query: 309 AHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
HGG+V++ FKS+ + + PK EHY CM+D L R G++ EAY+ I MP++P A +
Sbjct: 328 VHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVV 387
Query: 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427
G+LL C HG +++AEI + L +L+P + G V +SN+YA ++WD R+ M+
Sbjct: 388 WGTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKK 447
Query: 428 RGVKKYPGWS-FVE 440
+ K G+S FVE
Sbjct: 448 ETMTKAAGYSYFVE 461
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 304 bits (778), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 161/434 (37%), Positives = 258/434 (59%), Gaps = 7/434 (1%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S L ++DY+ V S++SNP ++ + +I G+ S +SL+ +M+ V PD+
Sbjct: 72 STLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVIT 131
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ KA RE +HAQ+ K G+ S + ++ +YG G++V A+++FD MP +
Sbjct: 132 SVLKACDLKVCRE----IHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDR 187
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR 187
V+ M++ Y++CG + A ++F+ + ++ V W+A+IDG V+ + +AL +F EM+
Sbjct: 188 DHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQ 247
Query: 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247
ANE T V VL AC+ LGAL+ GR + ++ ++ + L+ + +LI+MY++CG I
Sbjct: 248 MENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDIN 307
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
EA VF + DV+ +N MI GLAMHG E++ F +M G P+++T + LL+A
Sbjct: 308 EARRVFRVM--RDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNA 365
Query: 308 CAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+HGGL+ F S+ + V P+ EHY C+VD L R G++ EAY FI +P+EP
Sbjct: 366 CSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHI 425
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
MLG+LL+ C HG ++L E + K+L E + G YV LSN+YA +W E+ RE+M
Sbjct: 426 MLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMR 485
Query: 427 TRGVKKYPGWSFVE 440
G++K PG S +E
Sbjct: 486 DSGIEKEPGCSTIE 499
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 139/297 (46%), Gaps = 9/297 (3%)
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
++HA+I +T ++ D F+ LI + + + YA +VF + + +M+DG+ G
Sbjct: 47 SIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSG 106
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
++ M +V+ + +I +K D K I ++ +G ++ + ++
Sbjct: 107 RSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREIHAQVLKLGFGSSRSVGLKMME 166
Query: 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
G L + M M D+ T +I+ Y++CG IKEAL +F V+ D
Sbjct: 167 IYGKSGELVNAKKMFDEMPDRDHVAA----TVMINCYSECGFIKEALELFQDVKI--KDT 220
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVMEAWYFFK 322
+ W AMI GL + + ++LELF EMQ+ ++ +E T + +LSAC+ G L + W
Sbjct: 221 VCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSF 280
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379
+R + A +++ SR G + EA M + S ++++G HG
Sbjct: 281 VENQRMELSNFVGNA-LINMYSRCGDINEARRVFRVMRDKDVIS-YNTMISGLAMHG 335
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 303 bits (776), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/438 (36%), Positives = 251/438 (57%), Gaps = 35/438 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S S G D++ ++ + + W +I G+ ++ + ++++ FV+M + GV+ + +
Sbjct: 146 SGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEM 205
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + KA+G++ +VH +TG + D+FI +SL+ MYG
Sbjct: 206 TVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYG-------------- 251
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
KC + A++VF+ MP RNVV+W+ALI GYV+ + + +++F
Sbjct: 252 -----------------KCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVF 294
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
EEM NE TL SVL ACAH+GAL +GR + YMI + + T+LID+Y KC
Sbjct: 295 EEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKC 354
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
G ++EA++VF + H+ +V W AMI G A HG+ +++ +LF M ++P+E+TF+
Sbjct: 355 GCLEEAILVFERL--HEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMA 412
Query: 304 LLSACAHGGLVMEAWYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
+LSACAHGGLV E F S+ G+ M PK++HYACMVD R G + EA I +MP+E
Sbjct: 413 VLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPME 472
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
PT + G+L C+ H +L + ++++LQP H GRY L+N+Y+ + WDE R
Sbjct: 473 PTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVR 532
Query: 423 EAMETRGVKKYPGWSFVE 440
+ M+ + V K PG+S++E
Sbjct: 533 KQMKDQQVVKSPGFSWIE 550
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 145/301 (48%), Gaps = 37/301 (12%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISL--FVKMLRAGVSPDHLTYPFLAKA 72
Y+ ++L L I W+++I +S N+ +S + M R GV P T+P L KA
Sbjct: 54 YARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKA 113
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+L HA I K G +SD F+ NSLI
Sbjct: 114 VFKLRDSN-PFQFHAHIVKFGLDSDPFVRNSLI--------------------------- 145
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
GY+ G + A ++F+ +++VV+W+A+IDG+V+ G EA+V F EM+ G
Sbjct: 146 ----SGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVA 201
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG-LSLTLPLQTSLIDMYAKCGAIKEALI 251
ANE+T+VSVL A + + GR + ++ G + + + +SL+DMY KC +A
Sbjct: 202 ANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQK 261
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
VF E +V+ W A+I G + + +F EM + P+E T +LSACAH
Sbjct: 262 VFD--EMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHV 319
Query: 312 G 312
G
Sbjct: 320 G 320
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 302 bits (774), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 172/504 (34%), Positives = 265/504 (52%), Gaps = 69/504 (13%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SALS + + +V + + P + N++IR ++++ P ++ +F +M R G+ D+
Sbjct: 58 ISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADN 117
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG----------- 112
TYPFL KA + + +H I K G SD+++ N+LI Y CG
Sbjct: 118 FTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLF 177
Query: 113 ----------------------DIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
++ AR +FD MP + +SWN+MLDGYA+C EM+ A +
Sbjct: 178 EKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFE 237
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM----RDV----------------- 189
+FE MPERN VSWS ++ GY K GD + A V+F++M ++V
Sbjct: 238 LFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLK 297
Query: 190 ------------GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237
G K + ++S+L AC G L G + + L + +L+
Sbjct: 298 EADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALL 357
Query: 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297
DMYAKCG +K+A VF+ + K D++ WN M+ GL +HG KE++ELF+ M+ GI PD
Sbjct: 358 DMYAKCGNLKKAFDVFNDIPK--KDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPD 415
Query: 298 EITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFI 356
++TF+ +L +C H GL+ E +F S+ K +VP+ EHY C+VD L R G++ EA + +
Sbjct: 416 KVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVV 475
Query: 357 CQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWD 416
MP+EP + G+LL C H ++D+A+ V LV+L P G Y LSN+YA + W+
Sbjct: 476 QTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWE 535
Query: 417 EARTTREAMETRGVKKYPGWSFVE 440
R M++ GV+K G S VE
Sbjct: 536 GVADIRSKMKSMGVEKPSGASSVE 559
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ + C + N+A +VF + E NV ++LI + + +A +F EM+ G A+
Sbjct: 57 LISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFAD 116
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG--AIKEALIV 252
T +L AC+ L +MM ++ GLS + + +LID Y++CG +++A+ +
Sbjct: 117 NFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKL 176
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F + + D + WN+M+GGL G ++++ LF EM D I++ +L A
Sbjct: 177 FEKMS--ERDTVSWNSMLGGLVKAGELRDARRLFDEMP----QRDLISWNTMLDGYARCR 230
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
+ +A+ F+ + +R V ++ MV S+AG + A +MPL
Sbjct: 231 EMSKAFELFEKMPERNTV----SWSTMVMGYSKAGDMEMARVMFDKMPL 275
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 302 bits (773), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 161/507 (31%), Positives = 265/507 (52%), Gaps = 74/507 (14%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A S G+I ++ +V L P+IF WN +IRGYS++ + ++ ++ M A VSPD T
Sbjct: 62 ASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFT 121
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG-- 123
+P L KA L+ ++ VHAQ+ + G+++D+F+ N LI +Y C + AR VF+G
Sbjct: 122 FPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLP 181
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNV-VSWSALID-------------- 168
+P + VSW +++ YA+ GE A ++F M + +V W AL+
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241
Query: 169 ------------------------GYVKCGDYKEALVIFEEMR----------------- 187
Y KCG A ++F++M+
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301
Query: 188 --------------DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
+ + + +++ S + ACA +G+L+Q R M Y+ + +
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS 361
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
++LIDM+AKCG+++ A +VF DV++W+AMI G +HG +E++ L+ M+ G
Sbjct: 362 SALIDMFAKCGSVEGARLVFD--RTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGG 419
Query: 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAY 353
+ P+++TFLGLL AC H G+V E W+FF + + P+ +HYAC++D L RAG + +AY
Sbjct: 420 VHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAY 479
Query: 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413
E I MP++P ++ G+LL+ C H ++L E ++L + P + G YV LSN+YA +
Sbjct: 480 EVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAAR 539
Query: 414 RWDEARTTREAMETRGVKKYPGWSFVE 440
WD R M+ +G+ K G S+VE
Sbjct: 540 LWDRVAEVRVRMKEKGLNKDVGCSWVE 566
Score = 131 bits (330), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 160/368 (43%), Gaps = 75/368 (20%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG- 143
+HA++ G + F+ LIH S GDI +AR+VFD +P WN+++ GY++
Sbjct: 40 IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNH 99
Query: 144 ---------EMNMAR-----------------------------QVFELMPERNVVSWSA 165
M +AR QVF L + +V +
Sbjct: 100 FQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNG 159
Query: 166 LIDGYVKC---------------------------------GDYKEALVIFEEMRDVGSK 192
LI Y KC G+ EAL IF +MR + K
Sbjct: 160 LIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVK 219
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+ V LVSVL A L L QGR + ++ GL + L SL MYAKCG + A I+
Sbjct: 220 PDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKIL 279
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F ++ ++++WNAMI G A +G+ +E++++F EM + PD I+ +SACA G
Sbjct: 280 FDKMKS--PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337
Query: 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLL 372
+ +A ++ +G+ + ++D ++ G V E + L+ + +++
Sbjct: 338 SLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV-EGARLVFDRTLDRDVVVWSAMI 396
Query: 373 TGCMNHGK 380
G HG+
Sbjct: 397 VGYGLHGR 404
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 161/437 (36%), Positives = 260/437 (59%), Gaps = 17/437 (3%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I +S + +P +F + I S + +++ L+V++L + ++P+ T+ L
Sbjct: 78 GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLL 137
Query: 71 KA----SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
K+ SG+L +H + K G D +++ L+ +Y GD+V A++VFD MP
Sbjct: 138 KSCSTKSGKL--------IHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPE 189
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ VS +M+ YAK G + AR +F+ M ER++VSW+ +IDGY + G +AL++F+++
Sbjct: 190 RSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKL 249
Query: 187 RDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245
G K +E+T+V+ L AC+ +GAL+ GR + ++ + L + + T LIDMY+KCG+
Sbjct: 250 LAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGS 309
Query: 246 IKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ-IVGITPDEITFLGL 304
++EA++VF+ + D++ WNAMI G AMHG+ +++L LF EMQ I G+ P +ITF+G
Sbjct: 310 LEEAVLVFNDTPR--KDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGT 367
Query: 305 LSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
L ACAH GLV E F+S+G+ G+ PK EHY C+V L RAGQ+ AYE I M ++
Sbjct: 368 LQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDA 427
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ + S+L C HG L + + + L+ L + G YV LSN+YA ++ R
Sbjct: 428 DSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRN 487
Query: 424 AMETRGVKKYPGWSFVE 440
M+ +G+ K PG S +E
Sbjct: 488 LMKEKGIVKEPGISTIE 504
Score = 35.8 bits (81), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 77/189 (40%), Gaps = 6/189 (3%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTY 66
S G+++ + V + I WN +I GY+ ++ LF +M G+ P +T+
Sbjct: 305 SKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITF 364
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+A + + + + G + + L+ + G G + A E M
Sbjct: 365 IGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMN 424
Query: 126 TKM-SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVS---WSALIDGYVKCGDYKEALV 181
SV W+S+L G+ + +++ E + N+ + + L + Y GDY+
Sbjct: 425 MDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAK 484
Query: 182 IFEEMRDVG 190
+ M++ G
Sbjct: 485 VRNLMKEKG 493
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 298 bits (762), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 165/460 (35%), Positives = 264/460 (57%), Gaps = 22/460 (4%)
Query: 1 MLSFSALSYLG--NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNK--SISLFVKMLR 56
+L F A S L ++DY+ K+ + + F WNT+IRG+S+S +I+LF +M+
Sbjct: 61 ILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMS 120
Query: 57 AG-VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV 115
V P+ T+P + KA + K + +H K G+ D F+ ++L+ MY CG +
Sbjct: 121 DEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMK 180
Query: 116 YAREVF--DGMPTKMSVS------------WNSMLDGYAKCGEMNMARQVFELMPERNVV 161
AR +F + + M V WN M+DGY + G+ AR +F+ M +R+VV
Sbjct: 181 DARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVV 240
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
SW+ +I GY G +K+A+ +F EM+ + N VTLVSVL A + LG+L+ G + Y
Sbjct: 241 SWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYA 300
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
D G+ + L ++LIDMY+KCG I++A+ VF + + +V+ W+AMI G A+HG +
Sbjct: 301 EDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPR--ENVITWSAMINGFAIHGQAGD 358
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA-WYFFKSLGKRGMVPKSEHYACMV 340
+++ F +M+ G+ P ++ ++ LL+AC+HGGLV E YF + + G+ P+ EHY CMV
Sbjct: 359 AIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMV 418
Query: 341 DALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400
D L R+G + EA EFI MP++P + +LL C G +++ + V L+++ P G
Sbjct: 419 DLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSG 478
Query: 401 RYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
YV LSN+YA W E R M+ + ++K PG S ++
Sbjct: 479 AYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLID 518
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 297 bits (761), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 164/453 (36%), Positives = 248/453 (54%), Gaps = 35/453 (7%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
+ Y+ +L+ + +P F N+VIR Y+ S P ++++F +ML V PD ++ F+ KA
Sbjct: 90 VSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKA 149
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
E +H K+G +D+F+ N+L+++YG G AR+V D MP + +VSW
Sbjct: 150 CAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSW 209
Query: 133 NS-------------------------------MLDGYAKCGEMNMARQVFELMPERNVV 161
NS M+ GYA G + A++VF+ MP R+VV
Sbjct: 210 NSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVV 269
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRY 220
SW+A++ Y G Y E L +F +M D + K + TLVSVL ACA LG+L QG + Y
Sbjct: 270 SWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVY 329
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
+ G+ + L T+L+DMY+KCG I +AL VF K DV WN++I L++HG K
Sbjct: 330 IDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKR--DVSTWNSIISDLSVHGLGK 387
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACM 339
++LE+F+EM G P+ ITF+G+LSAC H G++ +A F+ + V P EHY CM
Sbjct: 388 DALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCM 447
Query: 340 VDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399
VD L R G++ EA E + ++P + + +L SLL C G+L+ AE + +L+EL
Sbjct: 448 VDLLGRMGKIEEAEELVNEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLRDS 507
Query: 400 GRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432
Y +SN+YA RW++ R M V +
Sbjct: 508 SGYAQMSNLYASDGRWEKVIDGRRNMRAERVNR 540
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 295 bits (755), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 157/441 (35%), Positives = 246/441 (55%), Gaps = 10/441 (2%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S GN++ + +V + + + WN++I + ++ +++ +F ML + V PD +T
Sbjct: 198 SKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLA 257
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTG-YESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ A L+ ++ VH ++ K +D+ +SN+ + MY C I AR +FD MP
Sbjct: 258 SVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ ++ SM+ GYA AR +F M ERNVVSW+ALI GY + G+ +EAL +F +
Sbjct: 318 RNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLL 377
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT------LPLQTSLIDMY 240
+ + ++L ACA L L G +++ G + + SLIDMY
Sbjct: 378 KRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMY 437
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300
KCG ++E +VF + + D + WNAMI G A +G+ E+LELF EM G PD IT
Sbjct: 438 VKCGCVEEGYLVFRKM--MERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHIT 495
Query: 301 FLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359
+G+LSAC H G V E ++F S+ + G+ P +HY CMVD L RAG + EA I +M
Sbjct: 496 MIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEM 555
Query: 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419
P++P + + GSLL C H + L + V +KL+E++P + G YV LSN+YA +W++
Sbjct: 556 PMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVM 615
Query: 420 TTREAMETRGVKKYPGWSFVE 440
R++M GV K PG S+++
Sbjct: 616 NVRKSMRKEGVTKQPGCSWIK 636
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 132/226 (58%), Gaps = 4/226 (1%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
VHA + K+G+ +++FI N LI Y CG + R+VFD MP + +WNS++ G K G
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
++ A +F MPER+ +W++++ G+ + +EAL F M G NE + SVL A
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLT-LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263
C+ L +++G + + +I K L+ + + ++L+DMY+KCG + +A VF E +V
Sbjct: 162 CSGLNDMNKG-VQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFD--EMGDRNV 218
Query: 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+ WN++I +G E+L++F M + PDE+T ++SACA
Sbjct: 219 VSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACA 264
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/436 (24%), Positives = 194/436 (44%), Gaps = 78/436 (17%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+ L+ LG +D + + + WN+++ G+++ +++ F M + G +
Sbjct: 94 TGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEY 153
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
++ + A L V VH+ IAK+ + SD++I ++L+ MY CG++ A+ VFD M
Sbjct: 154 SFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEM 213
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
+ VSWNS++ C E N G EAL +F+
Sbjct: 214 GDRNVVSWNSLI----TCFEQN---------------------------GPAVEALDVFQ 242
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMML-RYMIDKGLSLTLPLQTSLIDMYAKC 243
M + + +EVTL SV+ ACA L A+ G+ + R + + L + L + +DMYAKC
Sbjct: 243 MMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKC 302
Query: 244 GAIKEALIVFHGV-----------------------------EKHQSDVLIWNAMIGGLA 274
IKEA +F + + + +V+ WNA+I G
Sbjct: 303 SRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYT 362
Query: 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACA-----HGGL-----VMEAWYFFKSL 324
+G +E+L LF ++ + P +F +L ACA H G+ V++ + F+S
Sbjct: 363 QNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSG 422
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
+ + + ++D + G V E Y +M +E +++ G +G + A
Sbjct: 423 EEDDIFVGNS----LIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMIIGFAQNGYGNEA 477
Query: 385 EIVGKKLVEL--QPDH 398
+ ++++E +PDH
Sbjct: 478 LELFREMLESGEKPDH 493
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 294 bits (753), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 163/472 (34%), Positives = 250/472 (52%), Gaps = 38/472 (8%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S S L + DYS + + F N +IRG +++ S+ F+ MLR GV PD L
Sbjct: 68 SCSSLLKSPDYSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRL 127
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFD-- 122
T+PF+ K++ +L R L A+HA K + D F+ SL+ MY G + +A +VF+
Sbjct: 128 TFPFVLKSNSKLGFRWLGRALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEES 187
Query: 123 ---------------------------------GMPTKMSVSWNSMLDGYAKCGEMNMAR 149
MP + S SW++++ GY GE+N A+
Sbjct: 188 PDRIKKESILIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAK 247
Query: 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209
Q+FELMPE+NVVSW+ LI+G+ + GDY+ A+ + EM + G K NE T+ +VL AC+ G
Sbjct: 248 QLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSG 307
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269
AL G + Y++D G+ L + T+L+DMYAKCG + A VF + + D+L W AM
Sbjct: 308 ALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNM--NHKDILSWTAM 365
Query: 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG-KRG 328
I G A+HG ++++ F +M G PDE+ FL +L+AC + V FF S+
Sbjct: 366 IQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYA 425
Query: 329 MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388
+ P +HY +VD L RAG++ EA+E + MP+ P + +L C H AE V
Sbjct: 426 IEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVS 485
Query: 389 KKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ L+EL P+ G Y+ L +A + R +++ R ++ GWS++E
Sbjct: 486 QNLLELDPELCGSYIFLDKTHASKGNIQDVEKRRLSLQKRIKERSLGWSYIE 537
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 291 bits (744), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 157/468 (33%), Positives = 255/468 (54%), Gaps = 37/468 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A + +D + ++ + P +F +N + +G+ +P +S+ L+V+MLR VSP
Sbjct: 68 TACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSY 127
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
TY L KAS A R ++ A I K G+ + I +LI Y + G I AR+VFD M
Sbjct: 128 TYSSLVKASS-FASR-FGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEM 185
Query: 125 PTKMSVSW-------------------------------NSMLDGYAKCGEMNMARQVFE 153
P + ++W N +++GY G + A +F
Sbjct: 186 PERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFN 245
Query: 154 LMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213
MP ++++SW+ +I GY + Y+EA+ +F +M + G +EVT+ +V+ ACAHLG L+
Sbjct: 246 QMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEI 305
Query: 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273
G+ + Y + G L + + ++L+DMY+KCG+++ AL+VF + K ++ WN++I GL
Sbjct: 306 GKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPK--KNLFCWNSIIEGL 363
Query: 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL-GKRGMVPK 332
A HGF +E+L++F +M++ + P+ +TF+ + +AC H GLV E ++S+ +V
Sbjct: 364 AAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSN 423
Query: 333 SEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV 392
EHY MV S+AG + EA E I M EP A + G+LL GC H L +AEI KL+
Sbjct: 424 VEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLM 483
Query: 393 ELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY-PGWSFV 439
L+P + G Y L ++YA RW + R M G++K PG S +
Sbjct: 484 VLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSI 531
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 164/449 (36%), Positives = 250/449 (55%), Gaps = 12/449 (2%)
Query: 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSK--NPNKSISLFVKMLRAG 58
+L F L L N+ Y+ + S P + V+ YS S + + + S F M+
Sbjct: 62 LLRFCTLR-LCNLSYARFIFDRFSFPNTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRS 120
Query: 59 VS-PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGS-CGDIVY 116
V P+H YP + K++ L+ VH + K+G+ + + +L+H Y S I
Sbjct: 121 VPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITL 180
Query: 117 AREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDY 176
AR++FD M + VSW +ML GYA+ G+++ A +FE MPER+V SW+A++ + G +
Sbjct: 181 ARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLF 240
Query: 177 KEALVIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235
EA+ +F M + S + NEVT+V VL ACA G L + + + + LS + + S
Sbjct: 241 LEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNS 300
Query: 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM---QIV 292
L+D+Y KCG ++EA VF K + WN+MI A+HG +E++ +F EM I
Sbjct: 301 LVDLYGKCGNLEEASSVFKMASK--KSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNIN 358
Query: 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTE 351
I PD ITF+GLL+AC HGGLV + +F + R G+ P+ EHY C++D L RAG+ E
Sbjct: 359 DIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDE 418
Query: 352 AYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI 411
A E + M ++ ++ GSLL C HG LDLAE+ K LV L P++ G ++N+Y
Sbjct: 419 ALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGE 478
Query: 412 FKRWDEARTTREAMETRGVKKYPGWSFVE 440
W+EAR R+ ++ + K PGWS +E
Sbjct: 479 MGNWEEARRARKMIKHQNAYKPPGWSRIE 507
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 288 bits (736), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 171/434 (39%), Positives = 248/434 (57%), Gaps = 38/434 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+ + K+ + + WN +I GY+++ N +++ LF M++ V PD T +
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A + EL VH I G+ S+L I N+LI
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALI------------------------- 308
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
D Y+KCGE+ A +FE +P ++V+SW+ LI GY YKEAL++F+EM G
Sbjct: 309 ------DLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 362
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLTLPLQTSLIDMYAKCGAIK 247
N+VT++S+L ACAHLGA+D GR + Y IDK G++ L+TSLIDMYAKCG I+
Sbjct: 363 ETPNDVTMLSILPACAHLGAIDIGRWIHVY-IDKRLKGVTNASSLRTSLIDMYAKCGDIE 421
Query: 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307
A VF+ + H+S + WNAMI G AMHG S +LF+ M+ +GI PD+ITF+GLLSA
Sbjct: 422 AAHQVFNSI-LHKS-LSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSA 479
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C+H G++ + F+++ + M PK EHY CM+D L +G EA E I M +EP
Sbjct: 480 CSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGV 539
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
+ SLL C HG ++L E + L++++P++ G YV LSN+YA RW+E TR +
Sbjct: 540 IWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLN 599
Query: 427 TRGVKKYPGWSFVE 440
+G+KK PG S +E
Sbjct: 600 DKGMKKVPGCSSIE 613
Score = 233 bits (593), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 229/410 (55%), Gaps = 9/410 (2%)
Query: 1 MLSFSALS-YLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV 59
++ F LS + + Y+ V + P + WNT+ RG++ S +P ++ L+V M+ G+
Sbjct: 71 LIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGL 130
Query: 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119
P+ T+PF+ K+ + + +H + K G + DL++ SLI MY G + A +
Sbjct: 131 LPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHK 190
Query: 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179
VFD P + VS+ +++ GYA G + A+++F+ +P ++VVSW+A+I GY + G+YKEA
Sbjct: 191 VFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEA 250
Query: 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239
L +F++M + +E T+V+V+ ACA G+++ GR + ++ D G L + +LID+
Sbjct: 251 LELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDL 310
Query: 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299
Y+KCG ++ A +F + DV+ WN +IGG KE+L LF EM G TP+++
Sbjct: 311 YSKCGELETACGLFERLP--YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 368
Query: 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
T L +L ACAH G + + + KR G+ S ++D ++ G + A++
Sbjct: 369 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 428
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL--VELQPDHDGRYVGL 405
+ L + S +++ G HG+ D + + ++ + +QPD D +VGL
Sbjct: 429 SI-LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPD-DITFVGL 476
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 285 bits (730), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/431 (37%), Positives = 240/431 (55%), Gaps = 34/431 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
++ Y+ + +S P I +N++ RGYS+ NP + SLFV++L G+ PD+ T+P L
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA E +H K G + ++++ +LI+MY C D+
Sbjct: 137 KACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDV---------------- 180
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+ AR VF+ + E VV ++A+I GY + EAL +F EM+
Sbjct: 181 ---------------DSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKY 225
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K NE+TL+SVL +CA LG+LD G+ + +Y + + T+LIDM+AKCG++ +A+
Sbjct: 226 LKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAV 285
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
+F + D W+AMI A HG ++S+ +F M+ + PDEITFLGLL+AC+H
Sbjct: 286 SIFEKMR--YKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSH 343
Query: 311 GGLVMEAW-YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
G V E YF + + K G+VP +HY MVD LSRAG + +AYEFI ++P+ PT +
Sbjct: 344 TGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWR 403
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
LL C +H LDLAE V +++ EL H G YV LSN+YA K+W+ + R+ M+ R
Sbjct: 404 ILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRK 463
Query: 430 VKKYPGWSFVE 440
K PG S +E
Sbjct: 464 AVKVPGCSSIE 474
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 285 bits (728), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 149/431 (34%), Positives = 240/431 (55%), Gaps = 3/431 (0%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G I+Y+ V +S+ + WNT+I Y + +++ LF +M + V PD + +
Sbjct: 160 GRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIV 219
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A GR A++ + + D + +L+ MY G + ARE F M +
Sbjct: 220 SACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLF 279
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
+M+ GY+KCG ++ A+ +F+ ++++V W+ +I YV+ +EAL +FEEM G
Sbjct: 280 VSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSG 339
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
K + V++ SV+ ACA+LG LD+ + + + GL L + +LI+MYAKCG +
Sbjct: 340 IKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATR 399
Query: 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
VF + + +V+ W++MI L+MHG ++L LF M+ + P+E+TF+G+L C+H
Sbjct: 400 DVFEKMPRR--NVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSH 457
Query: 311 GGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369
GLV E F S+ + PK EHY CMVD RA + EA E I MP+ + G
Sbjct: 458 SGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWG 517
Query: 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429
SL++ C HG+L+L + K+++EL+PDHDG V +SN+YA +RW++ R R ME +
Sbjct: 518 SLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKN 577
Query: 430 VKKYPGWSFVE 440
V K G S ++
Sbjct: 578 VFKEKGLSRID 588
Score = 135 bits (340), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 109/483 (22%), Positives = 193/483 (39%), Gaps = 111/483 (22%)
Query: 15 YSCKVLSHL-SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS 73
Y+ V S + S P +N +R S+S P +I + ++ G D ++ + KA
Sbjct: 62 YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAV 121
Query: 74 GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN 133
+++ + +H K D F+ + MY S
Sbjct: 122 SKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYAS----------------------- 158
Query: 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193
CG +N AR VF+ M R+VV+W+ +I+ Y + G EA +FEEM+D
Sbjct: 159 --------CGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMP 210
Query: 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA------------ 241
+E+ L +++ AC G + R + ++I+ + + L T+L+ MYA
Sbjct: 211 DEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFF 270
Query: 242 -------------------KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKES 282
KCG + +A ++F EK D++ W MI + +E+
Sbjct: 271 RKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEK--KDLVCWTTMISAYVESDYPQEA 328
Query: 283 LELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY----------------------- 319
L +F EM GI PD ++ ++SACA+ G++ +A +
Sbjct: 329 LRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINM 388
Query: 320 ------------FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP---LEPT 364
F+ + +R +V ++ M++ALS G+ ++A +M +EP
Sbjct: 389 YAKCGGLDATRDVFEKMPRRNVVS----WSSMINALSMHGEASDALSLFARMKQENVEPN 444
Query: 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
+L GC + G ++ GKK+ D L + + + A REA
Sbjct: 445 EVTFVGVLYGCSHSGLVE----EGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREA 500
Query: 425 MET 427
+E
Sbjct: 501 LEV 503
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 146/305 (47%), Gaps = 39/305 (12%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
S S G +D + + + W T+I Y +S P +++ +F +M +G+ PD +
Sbjct: 286 SGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVV 345
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
+ + A L + A VH+ I G ES+L I+N+LI+MY CG + R+VF+ M
Sbjct: 346 SMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKM 405
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
P + VSW+SM++ + GE + A +F M + NV
Sbjct: 406 PRRNVVSWSSMINALSMHGEASDALSLFARMKQENV------------------------ 441
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKC 243
+ NEVT V VL C+H G +++G+ + M D+ ++ L ++D++ +
Sbjct: 442 -------EPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRA 494
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLEL--FTEMQIVGITPDEITF 301
++EAL V + S+V+IW +++ +HG LEL F +I+ + PD
Sbjct: 495 NLLREALEVIESMPV-ASNVVIWGSLMSACRIHG----ELELGKFAAKRILELEPDHDGA 549
Query: 302 LGLLS 306
L L+S
Sbjct: 550 LVLMS 554
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 284 bits (727), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 156/415 (37%), Positives = 243/415 (58%), Gaps = 7/415 (1%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVA--VHAQ 88
W + I +++ ++ F M AGV P+H+T+ L G A+ +H
Sbjct: 39 WTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGY 98
Query: 89 IAKTGYESD-LFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
K G + + + + ++I MY G AR VFD M K SV+WN+M+DGY + G+++
Sbjct: 99 ACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDN 158
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
A ++F+ MPER+++SW+A+I+G+VK G +EAL+ F EM+ G K + V +++ L AC +
Sbjct: 159 AAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTN 218
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
LGAL G + RY++ + + + SLID+Y +CG ++ A VF+ +EK V+ WN
Sbjct: 219 LGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRT--VVSWN 276
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG-K 326
++I G A +G ESL F +MQ G PD +TF G L+AC+H GLV E +F+ +
Sbjct: 277 SVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCD 336
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG-KLDLAE 385
+ P+ EHY C+VD SRAG++ +A + + MP++P ++GSLL C NHG + LAE
Sbjct: 337 YRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAE 396
Query: 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
+ K L +L YV LSN+YA +W+ A R M+ G+KK PG+S +E
Sbjct: 397 RLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIE 451
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 126/268 (47%), Gaps = 33/268 (12%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G +D + K+ + + W +I G+ K +++ F +M +GV PD++
Sbjct: 154 GQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAAL 213
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
A L + VH + +++++ +SNSLI +Y CG + +AR+VF M + V
Sbjct: 214 NACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVV 273
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
SWNS++ G+A G + E+LV F +M++ G
Sbjct: 274 SWNSVIVGFAANGNAH-------------------------------ESLVYFRKMQEKG 302
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYM-IDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
K + VT L AC+H+G +++G + M D +S + L+D+Y++ G +++A
Sbjct: 303 FKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDA 362
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHG 277
L + + ++V+I +++ + HG
Sbjct: 363 LKLVQSMPMKPNEVVI-GSLLAACSNHG 389
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 283 bits (723), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 172/510 (33%), Positives = 257/510 (50%), Gaps = 100/510 (19%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
F WN VI+ +S K+P +++ L ML GVS D + + KA RL + + +H
Sbjct: 87 FLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGF 146
Query: 89 IAKTGYESDLFISNSLIHMY-------------------------------GSCGDIVYA 117
+ KTG SDLF+ N LI +Y CG IV A
Sbjct: 147 LKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSA 206
Query: 118 REVFDGMPTKMS----------------------------------VSWNSMLDGYAKCG 143
RE+FD MP +M +SWNSM+DGY K G
Sbjct: 207 RELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHG 266
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM--RDVGSK--------- 192
+ A+ +F++MP R+VV+W+ +IDGY K G A +F++M RDV +
Sbjct: 267 RIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQ 326
Query: 193 ---------------------ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
++ TLV VL A A LG L + M Y+++K L
Sbjct: 327 NKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGK 386
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
L +LIDMY+KCG+I+ A++VF G+E D WNAMIGGLA+HG + + ++ +++
Sbjct: 387 LGVALIDMYSKCGSIQHAMLVFEGIENKSIDH--WNAMIGGLAIHGLGESAFDMLLQIER 444
Query: 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVT 350
+ + PD+ITF+G+L+AC+H GLV E F+ + ++ + P+ +HY CMVD LSR+G +
Sbjct: 445 LSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIE 504
Query: 351 EAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410
A I +MP+EP + + LT C +H + + E+V K L+ + YV LSN+YA
Sbjct: 505 LAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYA 564
Query: 411 IFKRWDEARTTREAMETRGVKKYPGWSFVE 440
F W + R R M+ R ++K PG S++E
Sbjct: 565 SFGMWKDVRRVRTMMKERKIEKIPGCSWIE 594
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 74/187 (39%), Gaps = 7/187 (3%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G+I ++ V + N I +WN +I G + + + +++ R + PD +T+
Sbjct: 396 SKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFV 455
Query: 68 FLAKASGR--LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ A L K L + K E L ++ + G I A+ + + MP
Sbjct: 456 GVLNACSHSGLVKEGL-LCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMP 514
Query: 126 TKMS-VSWNSMLDGYAKCGEMNMARQVFE---LMPERNVVSWSALIDGYVKCGDYKEALV 181
+ + V W + L + E V + L N S+ L + Y G +K+
Sbjct: 515 VEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMWKDVRR 574
Query: 182 IFEEMRD 188
+ M++
Sbjct: 575 VRTMMKE 581
>sp|Q9SY75|PPR30_ARATH Putative pentatricopeptide repeat-containing protein At1g10330
OS=Arabidopsis thaliana GN=PCMP-E71 PE=3 SV=1
Length = 467
Score = 280 bits (717), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 162/414 (39%), Positives = 242/414 (58%), Gaps = 10/414 (2%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
+NT+IR Y + S++LF ML + V P++LT+P L KA+ VA+H Q
Sbjct: 54 YNTLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIKAACSSFSVSYGVALHGQAL 113
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G+ D F+ S + YG GD+ +R++FD + V+ NS+LD + GEM+ A +
Sbjct: 114 KRGFLWDPFVQTSFVRFYGEVGDLESSRKMFDDILNPCVVACNSLLDACGRNGEMDYAFE 173
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM----RDVGSKANEVTLVSVLCACA 206
F+ MP +VVSW+ +I+G+ K G + +AL++F EM R V + NE T VSVL +CA
Sbjct: 174 YFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITP-NEATFVSVLSSCA 232
Query: 207 HL--GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
+ G + G+ + Y++ K + LT L T+L+DMY K G ++ AL +F + + V
Sbjct: 233 NFDQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQIRDKK--VC 290
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
WNA+I LA +G K++LE+F M+ + P+ IT L +L+ACA LV F S+
Sbjct: 291 AWNAIISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACARSKLVDLGIQLFSSI 350
Query: 325 -GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDL 383
+ ++P SEHY C+VD + RAG + +A FI +P EP AS+LG+LL C H +L
Sbjct: 351 CSEYKIIPTSEHYGCVVDLIGRAGLLVDAANFIQSLPFEPDASVLGALLGACKIHENTEL 410
Query: 384 AEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437
VGK+L+ LQP H G+YV LS A+ W EA R+AM G++K P +S
Sbjct: 411 GNTVGKQLIGLQPQHCGQYVALSTFNALDSNWSEAEKMRKAMIEAGIRKIPAYS 464
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 121/295 (41%), Gaps = 44/295 (14%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKML---RAGVSPDHLTYP 67
G +DY+ + + + W TVI G+SK K++ +F +M+ RA ++P+ T+
Sbjct: 166 GEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITPNEATFV 225
Query: 68 FLAKASGRLAKR--ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+ + + L +H + + +L+ MYG GD+ A +FD +
Sbjct: 226 SVLSSCANFDQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQIR 285
Query: 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185
K +WN+++ A G K+AL +FE
Sbjct: 286 DKKVCAWNAIISALASNGRP-------------------------------KQALEMFEM 314
Query: 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCG 244
M+ N +TL+++L ACA +D G + + + + T ++D+ + G
Sbjct: 315 MKSSYVHPNGITLLAILTACARSKLVDLGIQLFSSICSEYKIIPTSEHYGCVVDLIGRAG 374
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM--QIVGITPD 297
+ +A + + D + A++G +H E+ EL + Q++G+ P
Sbjct: 375 LLVDAANFIQSL-PFEPDASVLGALLGACKIH----ENTELGNTVGKQLIGLQPQ 424
Score = 35.4 bits (80), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 1/120 (0%)
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
++N +I G K SL LFT M + P+ +TF L+ A V
Sbjct: 53 VYNTLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIKAACSSFSVSYGVALHGQA 112
Query: 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384
KRG + V G + + + + L P SLL C +G++D A
Sbjct: 113 LKRGFLWDPFVQTSFVRFYGEVGDLESSRKMFDDI-LNPCVVACNSLLDACGRNGEMDYA 171
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 279 bits (714), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 154/437 (35%), Positives = 250/437 (57%), Gaps = 9/437 (2%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV-SPDHLTYPF 68
+G +D + ++ I WN++I G+++ +++ +F KMLR + SPD T
Sbjct: 225 VGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLAS 284
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK- 127
+ A L K + +H+ I TG++ + N+LI MY CG + AR + + TK
Sbjct: 285 VLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKD 344
Query: 128 MSVS-WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
+ + + ++LDGY K G+MN A+ +F + +R+VV+W+A+I GY + G Y EA+ +F M
Sbjct: 345 LKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSM 404
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
G + N TL ++L + L +L G+ + + G ++ + +LI MYAK G I
Sbjct: 405 VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNI 464
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
A F + + + D + W +MI LA HG +E+LELF M + G+ PD IT++G+ S
Sbjct: 465 TSASRAFDLI-RCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFS 523
Query: 307 ACAHGGLVMEAWYFF---KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
AC H GLV + +F K + K ++P HYACMVD RAG + EA EFI +MP+EP
Sbjct: 524 ACTHAGLVNQGRQYFDMMKDVDK--IIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEP 581
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
GSLL+ C H +DL ++ ++L+ L+P++ G Y L+N+Y+ +W+EA R+
Sbjct: 582 DVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRK 641
Query: 424 AMETRGVKKYPGWSFVE 440
+M+ VKK G+S++E
Sbjct: 642 SMKDGRVKKEQGFSWIE 658
Score = 166 bits (419), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 125/436 (28%), Positives = 199/436 (45%), Gaps = 35/436 (8%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
SA S G++D +C+ L W T+I GY +K+I + M++ G+ P
Sbjct: 87 LSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQ 146
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
T + + E VH+ I K G ++ +SNSL++MY CGD + A+ VFD
Sbjct: 147 FTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDR 206
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
M + SWN+M+ + + G+M++A FE M ER++V+W+++I G+ + G AL IF
Sbjct: 207 MVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIF 266
Query: 184 EEM-RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
+M RD + TL SVL ACA+L L G+ + +++ G ++ + +LI MY++
Sbjct: 267 SKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSR 326
Query: 243 CGAIKEA--LIVFHG-----------------------------VEKHQSDVLIWNAMIG 271
CG ++ A LI G V DV+ W AMI
Sbjct: 327 CGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIV 386
Query: 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331
G HG E++ LF M G P+ T +LS + + S K G +
Sbjct: 387 GYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIY 446
Query: 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA-EIVGKK 390
++ ++AG +T A + E S++ HG + A E+
Sbjct: 447 SVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETM 506
Query: 391 LVE-LQPDHDGRYVGL 405
L+E L+PDH YVG+
Sbjct: 507 LMEGLRPDHI-TYVGV 521
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 172/357 (48%), Gaps = 44/357 (12%)
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
L L K+ + R A VH ++ K+G +++ N+L+++Y G ++AR++FD
Sbjct: 15 LCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDE 74
Query: 124 MPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183
MP + + SWN++L Y+K G+M+ + F+ +P+R+ VSW+ +I GY G Y +A+ +
Sbjct: 75 MPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVM 134
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
+M G + + TL +VL + A ++ G+ + +++ GL + + SL++MYAKC
Sbjct: 135 GDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKC 194
Query: 244 GAIKEALIVFHGV-----------------------------EKHQSDVLIWNAMIGGLA 274
G A VF + + + D++ WN+MI G
Sbjct: 195 GDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFN 254
Query: 275 MHGFVKESLELFTEM-QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS 333
G+ +L++F++M + ++PD T +LSACA+ +E K + +
Sbjct: 255 QRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACAN----LEKLCIGKQIHSHIVTTGF 310
Query: 334 EHYACMVDAL----SRAGQVTEAYEFICQMPLEP------TASMLGSLLTGCMNHGK 380
+ +++AL SR G V A I Q + TA + G + G MN K
Sbjct: 311 DISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAK 367
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 276 bits (705), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 152/429 (35%), Positives = 242/429 (56%), Gaps = 6/429 (1%)
Query: 15 YSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74
Y+ +V+ + F W VIRGY+ +++I+++ M + ++P T+ L KA G
Sbjct: 101 YARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACG 160
Query: 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNS 134
+ L HAQ + +++ N++I MY C I AR+VFD MP + +SW
Sbjct: 161 TMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTE 220
Query: 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
++ YA+ G M A ++FE +P +++V+W+A++ G+ + +EAL F+ M G +A+
Sbjct: 221 LIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRAD 280
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT--LPLQTSLIDMYAKCGAIKEALIV 252
EVT+ + ACA LGA ++ G S + + + ++LIDMY+KCG ++EA+ V
Sbjct: 281 EVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNV 340
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI-VGITPDEITFLGLLSACAHG 311
F + + +V +++MI GLA HG +E+L LF M I P+ +TF+G L AC+H
Sbjct: 341 F--MSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHS 398
Query: 312 GLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GLV + F S+ + G+ P +HY CMVD L R G++ EA E I M +EP + G+
Sbjct: 399 GLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGA 458
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL C H ++AEI + L EL+PD G Y+ LSNVYA W R+ ++ +G+
Sbjct: 459 LLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGL 518
Query: 431 KKYPGWSFV 439
KK P S+V
Sbjct: 519 KKTPAVSWV 527
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 135/308 (43%), Gaps = 40/308 (12%)
Query: 4 FSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63
+A + +GN++ + ++ L + W ++ G++++ P +++ F +M ++G+ D
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281
Query: 64 LTYPFLAKASGRLAKRELAVAVHAQIAKTGYE-SD-LFISNSLIHMYGSCGDIVYAREVF 121
+T A +L + A K+GY SD + I ++LI MY CG++ A VF
Sbjct: 282 VTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVF 341
Query: 122 DGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV 181
M K +++SM+ G A G A +F M + +
Sbjct: 342 MSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEI-------------------- 381
Query: 182 IFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMY 240
K N VT V L AC+H G +DQGR + M G+ T T ++D+
Sbjct: 382 ----------KPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLL 431
Query: 241 AKCGAIKEA--LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
+ G ++EA LI VE H +W A++G +H E E+ E + + PD
Sbjct: 432 GRTGRLQEALELIKTMSVEPHGG---VWGALLGACRIHN-NPEIAEIAAE-HLFELEPDI 486
Query: 299 ITFLGLLS 306
I LLS
Sbjct: 487 IGNYILLS 494
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 275 bits (702), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 159/443 (35%), Positives = 244/443 (55%), Gaps = 46/443 (10%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S LG++DY+ KV I+ WN + R + + + + + L+ KM R GV D TY
Sbjct: 123 SDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYT 182
Query: 68 FLAKASGRLAKRELAV-------AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREV 120
++ KA E V +HA + + GY S ++I +L+ MY
Sbjct: 183 YVLKAC---VASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMY------------ 227
Query: 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
A+ G ++ A VF MP RNVVSWSA+I Y K G EAL
Sbjct: 228 -------------------ARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEAL 268
Query: 181 VIFEEM-RDV-GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238
F EM R+ S N VT+VSVL ACA L AL+QG+++ Y++ +GL LP+ ++L+
Sbjct: 269 RTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVT 328
Query: 239 MYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298
MY +CG ++ VF + H DV+ WN++I +HG+ K+++++F EM G +P
Sbjct: 329 MYGRCGKLEVGQRVFDRM--HDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTP 386
Query: 299 ITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357
+TF+ +L AC+H GLV E F+++ + G+ P+ EHYACMVD L RA ++ EA + +
Sbjct: 387 VTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQ 446
Query: 358 QMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417
M EP + GSLL C HG ++LAE ++L L+P + G YV L+++YA + WDE
Sbjct: 447 DMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDE 506
Query: 418 ARTTREAMETRGVKKYPGWSFVE 440
+ ++ +E RG++K PG ++E
Sbjct: 507 VKRVKKLLEHRGLQKLPGRCWME 529
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 118/264 (44%), Gaps = 39/264 (14%)
Query: 52 VKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSC 111
+++L SP TY L G + A+ VH I G + D F++ LI MY
Sbjct: 66 IRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDL 125
Query: 112 GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV 171
G + YA R+VF+ +R + W+AL
Sbjct: 126 GSVDYA-------------------------------RKVFDKTRKRTIYVWNALFRALT 154
Query: 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACA----HLGALDQGRMMLRYMIDKGLS 227
G +E L ++ +M +G +++ T VL AC + L +G+ + ++ +G S
Sbjct: 155 LAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYS 214
Query: 228 LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFT 287
+ + T+L+DMYA+ G + A VF G+ +V+ W+AMI A +G E+L F
Sbjct: 215 SHVYIMTTLVDMYARFGCVDYASYVFGGMPVR--NVVSWSAMIACYAKNGKAFEALRTFR 272
Query: 288 EM--QIVGITPDEITFLGLLSACA 309
EM + +P+ +T + +L ACA
Sbjct: 273 EMMRETKDSSPNSVTMVSVLQACA 296
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 10/210 (4%)
Query: 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRY 220
+S + LI K G K+A+ + + + E+ +LC C H +L + R+
Sbjct: 47 ISNNQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELL---ILC-CGHRSSLSDALRVHRH 102
Query: 221 MIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280
++D G L T LI MY+ G++ A VF K + +WNA+ L + G +
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRT--IYVWNALFRALTLAGHGE 160
Query: 281 ESLELFTEMQIVGITPDEITFLGLLSACAHG----GLVMEAWYFFKSLGKRGMVPKSEHY 336
E L L+ +M +G+ D T+ +L AC +M+ L +RG
Sbjct: 161 EVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIM 220
Query: 337 ACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
+VD +R G V A MP+ S
Sbjct: 221 TTLVDMYARFGCVDYASYVFGGMPVRNVVS 250
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 273 bits (698), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/433 (34%), Positives = 245/433 (56%), Gaps = 5/433 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFL 69
L N DY+ +V SH+ NP + +N +I+ YS P +S+S F M G+ D TY L
Sbjct: 49 LSNSDYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPL 108
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS 129
K+ L+ VH ++ +TG+ I ++ +Y S G + A++VFD M +
Sbjct: 109 LKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNV 168
Query: 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189
V WN M+ G+ G++ +F+ M ER++VSW+++I KCG +EAL +F EM D
Sbjct: 169 VVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQ 228
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT-LPLQTSLIDMYAKCGAIKE 248
G +E T+V+VL A LG LD G+ + GL + + +L+D Y K G ++
Sbjct: 229 GFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEA 288
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSA 307
A +F +++ +V+ WN +I G A++G + ++LF M G + P+E TFLG+L+
Sbjct: 289 ATAIFRKMQRR--NVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLAC 346
Query: 308 CAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS 366
C++ G V F + +R + ++EHY MVD +SR+G++TEA++F+ MP+ A+
Sbjct: 347 CSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAA 406
Query: 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426
M GSLL+ C +HG + LAE+ +LV+++P + G YV LSN+YA RW + R M+
Sbjct: 407 MWGSLLSACRSHGDVKLAEVAAMELVKIEPGNSGNYVLLSNLYAEEGRWQDVEKVRTLMK 466
Query: 427 TRGVKKYPGWSFV 439
++K G S +
Sbjct: 467 KNRLRKSTGQSTI 479
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 99/247 (40%), Gaps = 37/247 (14%)
Query: 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGE 144
+HA + + + I + GS + YA VF + + +N+M+ Y+ G
Sbjct: 23 IHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQNPNVLVFNAMIKCYSLVG- 81
Query: 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204
P E+L F M+ G A+E T +L +
Sbjct: 82 -----------PPL-------------------ESLSFFSSMKSRGIWADEYTYAPLLKS 111
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL 264
C+ L L G+ + +I G ++ ++++Y G + +A VF E + +V+
Sbjct: 112 CSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFD--EMSERNVV 169
Query: 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324
+WN MI G G V+ L LF +M I +++ ++S+ + G EA F +
Sbjct: 170 VWNLMIRGFCDSGDVERGLHLFKQMSERSI----VSWNSMISSLSKCGRDREALELFCEM 225
Query: 325 GKRGMVP 331
+G P
Sbjct: 226 IDQGFDP 232
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/439 (34%), Positives = 246/439 (56%), Gaps = 11/439 (2%)
Query: 11 GNIDYSCKVLSHLSNP----RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
G ++ ++LS + + I WN ++ G+++S +++ +F K+ G PD +T
Sbjct: 196 GCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTV 255
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
+ + G + +H + K G D + +++I MYG G + +F+
Sbjct: 256 SSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEM 315
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPER----NVVSWSALIDGYVKCGDYKEALVI 182
+ N+ + G ++ G ++ A ++FEL E+ NVVSW+++I G + G EAL +
Sbjct: 316 MEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALEL 375
Query: 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242
F EM+ G K N VT+ S+L AC ++ AL GR + + L + + ++LIDMYAK
Sbjct: 376 FREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAK 435
Query: 243 CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302
CG I + IVF+ + +++ WN+++ G +MHG KE + +F + + PD I+F
Sbjct: 436 CGRINLSQIVFNMMPT--KNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFT 493
Query: 303 GLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPL 361
LLSAC GL E W +FK + + G+ P+ EHY+CMV+ L RAG++ EAY+ I +MP
Sbjct: 494 SLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPF 553
Query: 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421
EP + + G+LL C +DLAEI +KL L+P++ G YV LSN+YA W E +
Sbjct: 554 EPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSI 613
Query: 422 REAMETRGVKKYPGWSFVE 440
R ME+ G+KK PG S+++
Sbjct: 614 RNKMESLGLKKNPGCSWIQ 632
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 198/376 (52%), Gaps = 9/376 (2%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78
VL + +P I+ ++++I +K+K +SI +F +M G+ PD P L K L+
Sbjct: 72 VLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSA 131
Query: 79 RELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDG 138
++ +H +G + D F+ S+ HMY CG + AR+VFD M K V+ +++L
Sbjct: 132 FKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCA 191
Query: 139 YAKCGEMNMARQVFELMP----ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194
YA+ G + ++ M E N+VSW+ ++ G+ + G +KEA+V+F+++ +G +
Sbjct: 192 YARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPD 251
Query: 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
+VT+ SVL + L+ GR++ Y+I +GL + +++IDMY K G + + +F+
Sbjct: 252 QVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFN 311
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
E ++ V NA I GL+ +G V ++LE+F + + + +++ +++ CA G
Sbjct: 312 QFEMMEAGVC--NAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKD 369
Query: 315 MEAWYFFKSLGKRGMVPKSEHYACMVDA---LSRAGQVTEAYEFICQMPLEPTASMLGSL 371
+EA F+ + G+ P M+ A ++ G + F ++ L + +L
Sbjct: 370 IEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSAL 429
Query: 372 LTGCMNHGKLDLAEIV 387
+ G+++L++IV
Sbjct: 430 IDMYAKCGRINLSQIV 445
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 33/246 (13%)
Query: 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEM 145
HA+I K+G ++D +IS LI Y + +N D
Sbjct: 38 HARILKSGAQNDGYISAKLIASYSN---------------------YNCFND-------- 68
Query: 146 NMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205
A V + +P+ + S+S+LI K + +++ +F M G + L ++ C
Sbjct: 69 --ADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVC 126
Query: 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265
A L A G+ + GL + +Q S+ MY +CG + +A VF + DV+
Sbjct: 127 AELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMS--DKDVVT 184
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325
+A++ A G ++E + + +EM+ GI + +++ G+LS G EA F+ +
Sbjct: 185 CSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIH 244
Query: 326 KRGMVP 331
G P
Sbjct: 245 HLGFCP 250
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 272 bits (695), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 155/438 (35%), Positives = 236/438 (53%), Gaps = 41/438 (9%)
Query: 8 SYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYP 67
S G++D + V +S+ + + ++I GY++ +++ LF +M G+SPD T
Sbjct: 342 SKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVT 401
Query: 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK 127
+ R + VH I + D+F+SN+L+ MY
Sbjct: 402 AVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMY------------------- 442
Query: 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF---- 183
AKCG M A VF M ++++SW+ +I GY K EAL +F
Sbjct: 443 ------------AKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 490
Query: 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243
EE R +E T+ VL ACA L A D+GR + Y++ G + SL+DMYAKC
Sbjct: 491 EEKR---FSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKC 547
Query: 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303
GA+ A ++F + D++ W MI G MHGF KE++ LF +M+ GI DEI+F+
Sbjct: 548 GALLLAHMLFDDIA--SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVS 605
Query: 304 LLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362
LL AC+H GLV E W FF + + P EHYAC+VD L+R G + +AY FI MP+
Sbjct: 606 LLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIP 665
Query: 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422
P A++ G+LL GC H + LAE V +K+ EL+P++ G YV ++N+YA ++W++ + R
Sbjct: 666 PDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLR 725
Query: 423 EAMETRGVKKYPGWSFVE 440
+ + RG++K PG S++E
Sbjct: 726 KRIGQRGLRKNPGCSWIE 743
Score = 135 bits (339), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 98/370 (26%), Positives = 167/370 (45%), Gaps = 73/370 (19%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++ + +V + + +WN ++ +KS + + SI LF KM+ +GV D T+ ++
Sbjct: 143 GDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVS 202
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
K+ L +H I K+G+ + NSL+ Y + AR+VFD M + +
Sbjct: 203 KSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVI 262
Query: 131 SWNSMLDGYAKCG-----------------EMNMAR--QVFELMPERNVVSW-------- 163
SWNS+++GY G E+++A VF + ++S
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIG 322
Query: 164 ------------SALIDGYVKCGDYK-------------------------------EAL 180
+ L+D Y KCGD EA+
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAV 382
Query: 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240
+FEEM + G + T+ +VL CA LD+G+ + ++ + L + + +L+DMY
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMY 442
Query: 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFT-EMQIVGITPDEI 299
AKCG+++EA +VF E D++ WN +IGG + + + E+L LF ++ +PDE
Sbjct: 443 AKCGSMQEAELVFS--EMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDER 500
Query: 300 TFLGLLSACA 309
T +L ACA
Sbjct: 501 TVACVLPACA 510
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 101/431 (23%), Positives = 165/431 (38%), Gaps = 89/431 (20%)
Query: 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAK 91
NT +R + +S N ++ L + + P L A + K V I
Sbjct: 65 NTQLRRFCESGNLENAVKLLCVSGKWDIDPRTLCSVLQLCADSKSLKD--GKEVDNFIRG 122
Query: 92 TGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQV 151
G+ D + + L MY +CGD+ A VFD + + ++ WN +++ AK G+ + + +
Sbjct: 123 NGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGL 182
Query: 152 FELM----------------------------------------PERNVVSWSALIDGYV 171
F+ M ERN V ++L+ Y+
Sbjct: 183 FKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG-NSLVAFYL 241
Query: 172 KCGDYKEALVIFEEM--RDV-----------------------------GSKANEVTLVS 200
K A +F+EM RDV G + + T+VS
Sbjct: 242 KNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVS 301
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
V CA + GR + + S +L+DMY+KCG + A VF E
Sbjct: 302 VFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFR--EMSD 359
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA--- 317
V+ + +MI G A G E+++LF EM+ GI+PD T +L+ CA L+ E
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV 419
Query: 318 --WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS---MLGSLL 372
W LG V + ++D ++ G + EA +M ++ S ++G
Sbjct: 420 HEWIKENDLGFDIFVSNA-----LMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 474
Query: 373 TGCMNHGKLDL 383
C + L L
Sbjct: 475 KNCYANEALSL 485
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 271 bits (694), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 164/509 (32%), Positives = 247/509 (48%), Gaps = 82/509 (16%)
Query: 12 NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK 71
N+ Y+ V + P ++ WN++IRGYS S NP+K++ + +MLR G SPD+ T+P++ K
Sbjct: 56 NLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLK 115
Query: 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVS 131
A L + VH + KTG+E ++++S L+HMY CG++ Y VF+ +P V+
Sbjct: 116 ACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVA 175
Query: 132 WNSMLDGYAKCGEMNMARQVFELMPER--------------------------------- 158
W S++ G+ + A + F M
Sbjct: 176 WGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQ 235
Query: 159 --------------NVVSWSALIDGYVKCGDYK--------------------------- 177
NV+ ++LID Y KCGD +
Sbjct: 236 GLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQN 295
Query: 178 ----EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ 233
EAL +F +M D+G ++VT +SV+ A G G+ + Y+ G +
Sbjct: 296 GDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIV 355
Query: 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293
+L++MYAK G + A F +EK D + W +I GLA HG E+L +F MQ G
Sbjct: 356 CALVNMYAKTGDAESAKKAFEDLEK--KDTIAWTVVIIGLASHGHGNEALSIFQRMQEKG 413
Query: 294 -ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTE 351
TPD IT+LG+L AC+H GLV E +F + G+ P EHY CMVD LSRAG+ E
Sbjct: 414 NATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEE 473
Query: 352 AYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI 411
A + MP++P ++ G+LL GC H L+L + + + E + G YV LSN+YA
Sbjct: 474 AERLVKTMPVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAK 533
Query: 412 FKRWDEARTTREAMETRGVKKYPGWSFVE 440
RW + + RE+M+++ V K G S VE
Sbjct: 534 AGRWADVKLIRESMKSKRVDKVLGHSSVE 562
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 271 bits (694), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 148/414 (35%), Positives = 236/414 (57%), Gaps = 11/414 (2%)
Query: 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87
+ WNT+I GY++S +++ LF + SP + + A SG + R + A
Sbjct: 250 VVSWNTIITGYAQSGKIDEARQLFDE------SPVQDVFTWTAMVSGYIQNRMVEEA--R 301
Query: 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNM 147
++ E + N+++ Y + A+E+FD MP + +WN+M+ GYA+CG+++
Sbjct: 302 ELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISE 361
Query: 148 ARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207
A+ +F+ MP+R+ VSW+A+I GY + G EAL +F +M G + N + S L CA
Sbjct: 362 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCAD 421
Query: 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267
+ AL+ G+ + ++ G + +L+ MY KCG+I+EA +F E D++ WN
Sbjct: 422 VVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFK--EMAGKDIVSWN 479
Query: 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA-WYFFKSLGK 326
MI G + HGF + +L F M+ G+ PD+ T + +LSAC+H GLV + YF+
Sbjct: 480 TMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQD 539
Query: 327 RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEI 386
G++P S+HYACMVD L RAG + +A+ + MP EP A++ G+LL HG +LAE
Sbjct: 540 YGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAET 599
Query: 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
K+ ++P++ G YV LSN+YA RW + R M +GVKK PG+S++E
Sbjct: 600 AADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 653
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 186/409 (45%), Gaps = 58/409 (14%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFLAKASGRL 76
K L + I WN I Y ++ N+++ +F +M R + VS + + +L R
Sbjct: 54 KPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYL-----RN 108
Query: 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML 136
+ ELA + ++ E DL N +I Y ++ ARE+F+ MP + SWN+ML
Sbjct: 109 GEFELARKLFDEMP----ERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTML 164
Query: 137 DGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEV 196
GYA+ G ++ AR VF+ MPE+N VSW+AL+ YV+ +EA ++F+ S+ N
Sbjct: 165 SGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFK------SREN-W 217
Query: 197 TLVSVLCACAHLGALDQGRMML--RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254
LVS C LG + + ++ R D + ++I YA+ G I EA +F
Sbjct: 218 ALVSWNCL---LGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFD 274
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM------------------------- 289
E DV W AM+ G + V+E+ ELF +M
Sbjct: 275 --ESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAK 332
Query: 290 QIVGITP--DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347
++ + P + T+ +++ A G + EA F + KR V +A M+ S++G
Sbjct: 333 ELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVS----WAAMIAGYSQSG 388
Query: 348 QVTEAYEFICQMPLEP---TASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393
EA QM E S S L+ C + L+L + + +LV+
Sbjct: 389 HSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVK 437
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 139/295 (47%), Gaps = 19/295 (6%)
Query: 102 NSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV 161
N +I Y G+ AR++FD MP + VSWN M+ GY + + AR++FE+MPER+V
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158
Query: 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM 221
SW+ ++ GY + G +A +F+ M + N+V+ ++L A +++ M+ +
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRM----PEKNDVSWNALLSAYVQNSKMEEACMLFKSR 214
Query: 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281
+ L L+ + K I EA F + + DV+ WN +I G A G + E
Sbjct: 215 EN----WALVSWNCLLGGFVKKKKIVEARQFFDSM--NVRDVVSWNTIITGYAQSGKIDE 268
Query: 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341
+ +LF E + D T+ ++S +V EA F + +R V + M+
Sbjct: 269 ARQLFDESPV----QDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVS----WNAMLA 320
Query: 342 ALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQP 396
+ ++ A E MP S +++TG GK+ A+ + K+ + P
Sbjct: 321 GYVQGERMEMAKELFDVMPCR-NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP 374
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 15/192 (7%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G+I+ + + ++ I WNT+I GYS+ ++ F M R G+ PD T +
Sbjct: 458 GSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVL 517
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNS-----LIHMYGSCGDIVYAREVFDGMP 125
A V Q T + + NS ++ + G G + A + MP
Sbjct: 518 SACSHTG----LVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMP 573
Query: 126 TKMSVS-WNSMLDGYAKCGEMNMAR----QVFELMPERNVVSWSALIDGYVKCGDYKEAL 180
+ + W ++L G +A ++F + PE N + L + Y G + +
Sbjct: 574 FEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPE-NSGMYVLLSNLYASSGRWGDVG 632
Query: 181 VIFEEMRDVGSK 192
+ MRD G K
Sbjct: 633 KLRVRMRDKGVK 644
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 150/437 (34%), Positives = 245/437 (56%), Gaps = 34/437 (7%)
Query: 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL 64
+A S G ++ + +V + + WNT+I Y++++ ++++ +F++M G
Sbjct: 104 NAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEF 163
Query: 65 TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
T + A G +H KT + +L++ +L
Sbjct: 164 TISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTAL-------------------- 203
Query: 125 PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFE 184
LD YAKCG + A QVFE M +++ V+WS+++ GYV+ +Y+EAL+++
Sbjct: 204 -----------LDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYR 252
Query: 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244
+ + + N+ TL SV+CAC++L AL +G+ M + G + + +S +DMYAKCG
Sbjct: 253 RAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCG 312
Query: 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304
+++E+ I+F V+ + ++ +WN +I G A H KE + LF +MQ G+ P+E+TF L
Sbjct: 313 SLRESYIIFSEVQ--EKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSL 370
Query: 305 LSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
LS C H GLV E FFK + G+ P HY+CMVD L RAG ++EAYE I +P +P
Sbjct: 371 LSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDP 430
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
TAS+ GSLL C + L+LAE+ +KL EL+P++ G +V LSN+YA K+W+E +R+
Sbjct: 431 TASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRK 490
Query: 424 AMETRGVKKYPGWSFVE 440
+ VKK G S+++
Sbjct: 491 LLRDCDVKKVRGKSWID 507
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 270 bits (690), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 155/486 (31%), Positives = 246/486 (50%), Gaps = 67/486 (13%)
Query: 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS-PDHLTYPFLAKASGRLA 77
V + +P + WN +I+GYS +++S+ ++M+R G++ PD T+P + K
Sbjct: 65 VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNG 124
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
+ + +VH + + G++ D+ + S + YG C D+ AR+VF MP + +VSW +++
Sbjct: 125 QVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVV 184
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSAL------------------------------- 166
Y K GE+ A+ +F+LMPERN+ SW+AL
Sbjct: 185 AYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSM 244
Query: 167 IDGYVKCGDYKEALVIFEEMRDVGSKA-------------------------------NE 195
IDGY K GD A +FEE R V +A +E
Sbjct: 245 IDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDE 304
Query: 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP-LQTSLIDMYAKCGAIKEALIVFH 254
+V ++ AC+ +G + + Y+ + + + +LIDM AKCG + A +F
Sbjct: 305 FIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFE 364
Query: 255 GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314
E Q D++ + +M+ G+A+HG E++ LF +M GI PDE+ F +L C LV
Sbjct: 365 --EMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLV 422
Query: 315 MEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLT 373
E +F+ + K+ ++ +HY+C+V+ LSR G++ EAYE I MP E AS GSLL
Sbjct: 423 EEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLG 482
Query: 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKY 433
GC HG ++AE+V + L EL+P G YV LSN+YA RW + R+ M G+ K
Sbjct: 483 GCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKI 542
Query: 434 PGWSFV 439
G S++
Sbjct: 543 CGRSWI 548
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 18/159 (11%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
G++D + K+ + + + +++ G + +++I LF KM+ G+ PD + + +
Sbjct: 354 GHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVIL 413
Query: 71 KASG--RLAKR-----ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG 123
K G RL + EL ++ +A + S ++++ G + A E+
Sbjct: 414 KVCGQSRLVEEGLRYFELMRKKYSILASPDHYS------CIVNLLSRTGKLKEAYELIKS 467
Query: 124 MPTKMSVS-WNSMLDGYAKCGEMNM----ARQVFELMPE 157
MP + S W S+L G + G + AR +FEL P+
Sbjct: 468 MPFEAHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQ 506
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 269 bits (688), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 152/430 (35%), Positives = 243/430 (56%), Gaps = 4/430 (0%)
Query: 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72
ID + ++ + N + Y + +++ +F M+ +GV PD ++ +
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346
Query: 73 SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSW 132
+L + H + + G+ES I N+LI MY C A +FD M K V+W
Sbjct: 347 CSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTW 406
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV-GS 191
NS++ GY + GE++ A + FE MPE+N+VSW+ +I G V+ ++EA+ +F M+ G
Sbjct: 407 NSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGV 466
Query: 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251
A+ VT++S+ AC HLGALD + + Y+ G+ L + L T+L+DM+++CG + A+
Sbjct: 467 NADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMS 526
Query: 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311
+F+ + DV W A IG +AM G + ++ELF +M G+ PD + F+G L+AC+HG
Sbjct: 527 IFNSLTNR--DVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHG 584
Query: 312 GLVMEAWYFFKSLGK-RGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGS 370
GLV + F S+ K G+ P+ HY CMVD L RAG + EA + I MP+EP + S
Sbjct: 585 GLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNS 644
Query: 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430
LL C G +++A +K+ L P+ G YV LSNVYA RW++ R +M+ +G+
Sbjct: 645 LLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGL 704
Query: 431 KKYPGWSFVE 440
+K PG S ++
Sbjct: 705 RKPPGTSSIQ 714
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 146/282 (51%), Gaps = 32/282 (11%)
Query: 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88
F +N++IRGY+ S N++I LF++M+ +G+SPD T+PF A + + + +H
Sbjct: 100 FMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGL 159
Query: 89 IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148
I K GY DLF+ NSL+H Y CG++ AR+VFD M + VSW SM+ GYA+ + A
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYAR---RDFA 216
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
+ +L F +RD N VT+V V+ ACA L
Sbjct: 217 KDAVDL---------------------------FFRMVRDEEVTPNSVTMVCVISACAKL 249
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
L+ G + ++ + G+ + + ++L+DMY KC AI A +F E S++ + NA
Sbjct: 250 EDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFD--EYGASNLDLCNA 307
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310
M G +E+L +F M G+ PD I+ L +S+C+
Sbjct: 308 MASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 161/375 (42%), Gaps = 66/375 (17%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPFL 69
G +D + KV +S + W ++I GY++ ++ LF +M+R V+P+ +T +
Sbjct: 183 GELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCV 242
Query: 70 AKASGRLAKRELAVAVHAQIAKTGYE-SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A +L E V+A I +G E +DL +S
Sbjct: 243 ISACAKLEDLETGEKVYAFIRNSGIEVNDLMVS--------------------------- 275
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
+++D Y KC +++A+++F+ N+ +A+ YV+ G +EAL +F M D
Sbjct: 276 -----ALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMD 330
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G + + ++++S + +C+ L + G+ Y++ G + +LIDMY KC
Sbjct: 331 SGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDT 390
Query: 249 ALIVFHGVEKH-----------------------------QSDVLIWNAMIGGLAMHGFV 279
A +F + + +++ WN +I GL
Sbjct: 391 AFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLF 450
Query: 280 KESLELFTEMQIV-GITPDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHYA 337
+E++E+F MQ G+ D +T + + SAC H G L + W ++ + K G+
Sbjct: 451 EEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYY-IEKNGIQLDVRLGT 509
Query: 338 CMVDALSRAGQVTEA 352
+VD SR G A
Sbjct: 510 TLVDMFSRCGDPESA 524
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI----VFHGVEKHQSDVLI 265
+D+ +M R + +GL + T L+ + G +E+L VF E + + +
Sbjct: 44 TIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGT-RESLSFAKEVFENSESYGT-CFM 101
Query: 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
+N++I G A G E++ LF M GI+PD+ TF LSACA
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACA 145
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 9/191 (4%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
S G+ + + + + L+N + W I + + N ++I LF M+ G+ PD + +
Sbjct: 515 FSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAF 574
Query: 67 --PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124
A + G L ++ + ++ + G + ++ + G G + A ++ + M
Sbjct: 575 VGALTACSHGGLVQQGKEI-FYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDM 633
Query: 125 PTKMS-VSWNSMLDGYAKCGEMNMARQVFE----LMPERNVVSWSALIDGYVKCGDYKEA 179
P + + V WNS+L G + MA E L PER S+ L + Y G + +
Sbjct: 634 PMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPER-TGSYVLLSNVYASAGRWNDM 692
Query: 180 LVIFEEMRDVG 190
+ M++ G
Sbjct: 693 AKVRLSMKEKG 703
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 269 bits (688), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 145/432 (33%), Positives = 239/432 (55%), Gaps = 35/432 (8%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
+++Y+ + + +P F +NT+IRGY + +++ + +M++ G PD+ TYP L
Sbjct: 80 NSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLL 139
Query: 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV 130
KA RL +H Q+ K G E+D+F+ NSLI+MYG
Sbjct: 140 KACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYG--------------------- 178
Query: 131 SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDV 189
+CGEM ++ VFE + + SWS+++ G + E L++F M +
Sbjct: 179 ----------RCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSET 228
Query: 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249
KA E +VS L ACA+ GAL+ G + +++ L + +QTSL+DMY KCG + +A
Sbjct: 229 NLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKA 288
Query: 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
L +F +EK + L ++AMI GLA+HG + +L +F++M G+ PD + ++ +L+AC+
Sbjct: 289 LHIFQKMEKRNN--LTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACS 346
Query: 310 HGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASML 368
H GLV E F + K G V P +EHY C+VD L RAG + EA E I +P+E +
Sbjct: 347 HSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIW 406
Query: 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428
+ L+ C ++L +I ++L++L + G Y+ +SN+Y+ + WD+ TR + +
Sbjct: 407 RTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIK 466
Query: 429 GVKKYPGWSFVE 440
G+K+ PG+S VE
Sbjct: 467 GLKQTPGFSIVE 478
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 269 bits (687), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 152/424 (35%), Positives = 237/424 (55%), Gaps = 34/424 (8%)
Query: 18 KVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLA 77
++L N + WN ++ GY++S + +K++ LF M + G D T + K G L
Sbjct: 472 EILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLF 531
Query: 78 KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLD 137
VHA K+GY+ DL++S+ + LD
Sbjct: 532 AINQGKQVHAYAIKSGYDLDLWVSSGI-------------------------------LD 560
Query: 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197
Y KCG+M+ A+ F+ +P + V+W+ +I G ++ G+ + A +F +MR +G +E T
Sbjct: 561 MYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFT 620
Query: 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257
+ ++ A + L AL+QGR + + + + TSL+DMYAKCG+I +A +F +E
Sbjct: 621 IATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIE 680
Query: 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317
++ WNAM+ GLA HG KE+L+LF +M+ +GI PD++TF+G+LSAC+H GLV EA
Sbjct: 681 --MMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEA 738
Query: 318 WYFFKSL-GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCM 376
+ +S+ G G+ P+ EHY+C+ DAL RAG V +A I M +E +ASM +LL C
Sbjct: 739 YKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACR 798
Query: 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436
G + + V KL+EL+P YV LSN+YA +WDE + R M+ VKK PG+
Sbjct: 799 VQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGF 858
Query: 437 SFVE 440
S++E
Sbjct: 859 SWIE 862
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 101/221 (45%), Gaps = 28/221 (12%)
Query: 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA 140
L HA+I + F+ N+LI MY CG + YAR VFD MP + VSWNS+L YA
Sbjct: 57 LGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYA 116
Query: 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200
+ E V E + ++A ++F +R + +TL
Sbjct: 117 QSSEC-----VVE---------------------NIQQAFLLFRILRQDVVYTSRMTLSP 150
Query: 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260
+L C H G + Y GL + +L+++Y K G +KE ++F E
Sbjct: 151 MLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFE--EMPY 208
Query: 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301
DV++WN M+ GF +E+++L + G+ P+EIT
Sbjct: 209 RDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/362 (23%), Positives = 154/362 (42%), Gaps = 36/362 (9%)
Query: 24 SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAV 83
S I + N + Y S + + F M+ + V D +T+ + + ++ L
Sbjct: 276 SVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQ 335
Query: 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143
VH K G + L +SNSLI+MY K
Sbjct: 336 QVHCMALKLGLDLMLTVSNSLINMY-------------------------------CKLR 364
Query: 144 EMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLC 203
+ AR VF+ M ER+++SW+++I G + G EA+ +F ++ G K ++ T+ SVL
Sbjct: 365 KFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLK 424
Query: 204 ACAHLG-ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
A + L L + + + I + T+LID Y++ +KEA I+F E+H D
Sbjct: 425 AASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF---ERHNFD 481
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
++ WNAM+ G ++L+LF M G D+ T + C + +
Sbjct: 482 LVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHA 541
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
K G + ++D + G ++ A +P+ P ++++GC+ +G+ +
Sbjct: 542 YAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGCIENGEEE 600
Query: 383 LA 384
A
Sbjct: 601 RA 602
Score = 39.7 bits (91), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG-----FVKESLELF 286
L +LI MY+KCG++ A VF + D++ WN+++ A ++++ LF
Sbjct: 76 LINNLISMYSKCGSLTYARRVFDKMPDR--DLVSWNSILAAYAQSSECVVENIQQAFLLF 133
Query: 287 TEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA 346
++ + +T +L C H G V + F K G+ +V+ +
Sbjct: 134 RILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKF 193
Query: 347 GQVTEAYEFICQMP 360
G+V E +MP
Sbjct: 194 GKVKEGKVLFEEMP 207
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 268 bits (686), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 154/436 (35%), Positives = 246/436 (56%), Gaps = 8/436 (1%)
Query: 10 LGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLR-AGVSPDHLTYPF 68
LG I+ + KV + + WN +I Y + +I +F +M + + + D T
Sbjct: 94 LGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVS 153
Query: 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128
A L E+ ++ + T +E + I N+L+ M+ CG + AR VFD M K
Sbjct: 154 TLSACSALKNLEIGERIY-RFVVTEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKN 212
Query: 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188
W SM+ GY G ++ AR +FE P ++VV W+A+++GYV+ + EAL +F M+
Sbjct: 213 VKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQT 272
Query: 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248
G + + LVS+L CA GAL+QG+ + Y+ + +++ + T+L+DMYAKCG I+
Sbjct: 273 AGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIET 332
Query: 249 ALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308
AL VF+ E + D W ++I GLAM+G +L+L+ EM+ VG+ D ITF+ +L+AC
Sbjct: 333 ALEVFY--EIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTAC 390
Query: 309 AHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASM 367
HGG V E F S+ +R V PKSEH +C++D L RAG + EA E I +M E ++
Sbjct: 391 NHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETL 450
Query: 368 LG---SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424
+ SLL+ N+G + +AE V +KL +++ + L++VYA RW++ R
Sbjct: 451 VPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRK 510
Query: 425 METRGVKKYPGWSFVE 440
M+ G++K+PG S +E
Sbjct: 511 MKDLGIRKFPGCSSIE 526
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 167/377 (44%), Gaps = 62/377 (16%)
Query: 20 LSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKR 79
+S L P + +N +++ + K+ K ++LF ++ G+ PD+ T P + K+ GRL K
Sbjct: 3 MSLLQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKV 62
Query: 80 ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY 139
VH K G E D ++SNSL+ MY S G I +VFD MP + VSWN
Sbjct: 63 IEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWN------ 116
Query: 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM-RDVGSKANEVTL 198
LI YV G +++A+ +F+ M ++ K +E T+
Sbjct: 117 -------------------------GLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTI 151
Query: 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258
VS L AC+ L L+ G + R+++ + +++ + +L+DM+ KCG + +A VF +
Sbjct: 152 VSTLSACSALKNLEIGERIYRFVVTE-FEMSVRIGNALVDMFCKCGCLDKARAVFDSMRD 210
Query: 259 HQ-----------------------------SDVLIWNAMIGGLAMHGFVKESLELFTEM 289
DV++W AM+ G E+LELF M
Sbjct: 211 KNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCM 270
Query: 290 QIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQV 349
Q GI PD + LL+ CA G + + + + + + +VD ++ G +
Sbjct: 271 QTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCI 330
Query: 350 TEAYEFICQMPLEPTAS 366
A E ++ TAS
Sbjct: 331 ETALEVFYEIKERDTAS 347
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 268 bits (685), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 163/473 (34%), Positives = 240/473 (50%), Gaps = 40/473 (8%)
Query: 6 ALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65
A + L ++ + KV + + N +IR Y + + + +F M V PDH T
Sbjct: 83 AYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYT 142
Query: 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125
+P + KA + +H K G S LF+ N L+ MYG CG + AR V D M
Sbjct: 143 FPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMS 202
Query: 126 TKMSVSWNSMLDGYAK----------CGEM----------NMA----------------- 148
+ VSWNS++ GYA+ C EM MA
Sbjct: 203 RRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYV 262
Query: 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL 208
+ +F M ++++VSW+ +I Y+K EA+ ++ M G + + V++ SVL AC
Sbjct: 263 KDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDT 322
Query: 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268
AL G+ + Y+ K L L L+ +LIDMYAKCG +++A VF ++ DV+ W A
Sbjct: 323 SALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSR--DVVSWTA 380
Query: 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR- 327
MI G +++ LF+++Q G+ PD I F+ L+AC+H GL+ E FK +
Sbjct: 381 MISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHY 440
Query: 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387
+ P+ EH ACMVD L RAG+V EAY FI M +EP + G+LL C H D+ +
Sbjct: 441 KITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLA 500
Query: 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440
KL +L P+ G YV LSN+YA RW+E R M+++G+KK PG S VE
Sbjct: 501 ADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVE 553
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 105/390 (26%), Positives = 175/390 (44%), Gaps = 28/390 (7%)
Query: 54 MLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113
M R V L +P K R L ++ + + +F+ ++ Y
Sbjct: 1 MKRINVDLHLLHFPKFRKFQSRKVSSSLP---KLELDQKSPQETVFLLGQVLDTYPDIRT 57
Query: 114 I--VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV 171
+ V++R + + + S+ ++ YA ++ AR+VF+ +PERNV+ + +I YV
Sbjct: 58 LRTVHSRIILEDLRCNSSLGVK-LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYV 116
Query: 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP 231
G Y E + +F M + + T VL AC+ G + GR + GLS TL
Sbjct: 117 NNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLF 176
Query: 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291
+ L+ MY KCG + EA +V E + DV+ WN+++ G A + ++LE+ EM+
Sbjct: 177 VGNGLVSMYGKCGFLSEARLVLD--EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMES 234
Query: 292 VGITPDEITFLGLLSACAHGGL--VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQV 349
V I+ D T LL A ++ VM F +GK+ +V + M+ +
Sbjct: 235 VKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVS----WNVMIGVYMKNAMP 290
Query: 350 TEAYEFICQMP---LEPTASMLGSLLTGCMNHGKLDLAE-----IVGKKLV-ELQPDHDG 400
EA E +M EP A + S+L C + L L + I KKL+ L ++
Sbjct: 291 VEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLEN-- 348
Query: 401 RYVGLSNVYAIFKRWDEARTTREAMETRGV 430
L ++YA ++AR E M++R V
Sbjct: 349 ---ALIDMYAKCGCLEKARDVFENMKSRDV 375
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/437 (35%), Positives = 233/437 (53%), Gaps = 36/437 (8%)
Query: 7 LSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTY 66
L +G++ Y+ +V + PRIF WNT+ +GY +++ P +S+ L+ KM GV PD TY
Sbjct: 53 LVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTY 112
Query: 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT 126
PF+ KA +L A+HA + K G+ ++ L+ MY
Sbjct: 113 PFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMY------------------ 154
Query: 127 KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEM 186
K GE++ A +FE M +++V+W+A + V+ G+ AL F +M
Sbjct: 155 -------------MKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKM 201
Query: 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246
+ + T+VS+L AC LG+L+ G + + + + ++ + +DM+ KCG
Sbjct: 202 CADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNT 261
Query: 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306
+ A ++F E Q +V+ W+ MI G AM+G +E+L LFT MQ G+ P+ +TFLG+LS
Sbjct: 262 EAARVLFE--EMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLS 319
Query: 307 ACAHGGLVMEAWYFFKSL---GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363
AC+H GLV E +F + + + P+ EHYACMVD L R+G + EAYEFI +MP+EP
Sbjct: 320 ACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEP 379
Query: 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423
+ G+LL C H + L + V LVE PD +V LSN+YA +WD R
Sbjct: 380 DTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRS 439
Query: 424 AMETRGVKKYPGWSFVE 440
M G KK +S VE
Sbjct: 440 KMRKLGTKKVAAYSSVE 456
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 2/180 (1%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192
+L+ G+M ARQVF+ M + + W+ L GYV+ E+L+++++MRD+G +
Sbjct: 47 TQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVR 106
Query: 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252
+E T V+ A + LG G + +++ G + T L+ MY K G + A +
Sbjct: 107 PDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFL 166
Query: 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG 312
F ++ D++ WNA + G +LE F +M + D T + +LSAC G
Sbjct: 167 FESMQ--VKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLG 224
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 267 bits (682), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/417 (36%), Positives = 232/417 (55%), Gaps = 11/417 (2%)
Query: 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90
W T++ +S+ S+ LFV+M R V D ++ L +L A H
Sbjct: 79 WTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAV 138
Query: 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQ 150
K G + + + N+L+ MYG CG + + +F+ + K VSW +LD K + R+
Sbjct: 139 KMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGRE 198
Query: 151 VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DVGSKANEVTLVSVLCACAHLG 209
VF MPERN V+W+ ++ GY+ G +E L + EM G N VTL S+L ACA G
Sbjct: 199 VFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSG 258
Query: 210 ALDQGRMMLRYMIDKGLSL-------TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262
L GR + Y + K + + + + T+L+DMYAKCG I ++ VF + K +
Sbjct: 259 NLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKR--N 316
Query: 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322
V+ WNA+ GLAMHG + +++F +M I + PD++TF +LSAC+H G+V E W F
Sbjct: 317 VVTWNALFSGLAMHGKGRMVIDMFPQM-IREVKPDDLTFTAVLSACSHSGIVDEGWRCFH 375
Query: 323 SLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLD 382
SL G+ PK +HYACMVD L RAG + EA + +MP+ P +LGSLL C HGK++
Sbjct: 376 SLRFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVE 435
Query: 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439
+AE + ++L+++ P + + +SN+Y R D A R ++ RG++K PG S +
Sbjct: 436 IAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSI 492
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 136/305 (44%), Gaps = 41/305 (13%)
Query: 133 NSMLDGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190
N++ YA GEM A+++F+ +P E++ V W+ L+ + + G ++ +F EMR
Sbjct: 47 NALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKR 106
Query: 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250
+ ++V++V + CA L L + + G+ ++ + +L+DMY KCG + E
Sbjct: 107 VEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVK 166
Query: 251 IVFHGVEKH-----------------------------QSDVLIWNAMIGGLAMHGFVKE 281
+F +E+ + + + W M+ G GF +E
Sbjct: 167 RIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTRE 226
Query: 282 SLELFTEMQI-VGITPDEITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHY--- 336
LEL EM G + +T +LSACA G LV+ W +L K M+ + Y
Sbjct: 227 VLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDV 286
Query: 337 ---ACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA-EIVGKKLV 392
+VD ++ G + + + ++ + +L +G HGK + ++ + +
Sbjct: 287 MVGTALVDMYAKCGNIDSSMN-VFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR 345
Query: 393 ELQPD 397
E++PD
Sbjct: 346 EVKPD 350
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 205 CAHLGALDQGRMMLRYMIDKGLSLTLP---LQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261
CAH L G+ + + GL P L +L YA G + A +F + +
Sbjct: 16 CAHRSFLRPGKELHAVLTTSGLK-KAPRSYLSNALFQFYASSGEMVTAQKLFDEIPLSEK 74
Query: 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309
D + W ++ + +G + S++LF EM+ + D+++ + L CA
Sbjct: 75 DNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCA 122
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLA 70
GNID S V + + WN + G + I +F +M+R V PD LT+ +
Sbjct: 300 GNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAVL 358
Query: 71 KA 72
A
Sbjct: 359 SA 360
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,103,954
Number of Sequences: 539616
Number of extensions: 6432167
Number of successful extensions: 22729
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 14200
Number of HSP's gapped (non-prelim): 2415
length of query: 440
length of database: 191,569,459
effective HSP length: 121
effective length of query: 319
effective length of database: 126,275,923
effective search space: 40282019437
effective search space used: 40282019437
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)