Query 039362
Match_columns 440
No_of_seqs 684 out of 1741
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 08:57:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 6.7E-69 1.5E-73 524.9 47.6 434 1-440 228-732 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.4E-68 2.9E-73 511.0 45.2 431 2-440 94-569 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.1E-63 2.3E-68 488.4 45.3 427 1-434 127-625 (857)
4 PLN03218 maturation of RBCL 1; 100.0 9.6E-63 2.1E-67 473.5 47.8 362 11-372 420-796 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.4E-62 3E-67 472.4 46.4 424 5-434 380-847 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 7E-58 1.5E-62 437.3 37.4 426 1-435 164-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 7.1E-32 1.5E-36 270.3 45.3 416 4-429 440-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.2E-31 9.2E-36 264.7 46.1 413 5-426 475-898 (899)
9 PRK11447 cellulose synthase su 100.0 8.5E-24 1.8E-28 212.8 47.0 406 10-427 282-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1.2E-23 2.6E-28 211.8 45.0 317 106-430 277-702 (1157)
11 TIGR00990 3a0801s09 mitochondr 100.0 2.3E-23 4.9E-28 197.3 43.7 394 30-429 129-572 (615)
12 KOG4626 O-linked N-acetylgluco 99.9 2.9E-25 6.2E-30 191.9 27.0 369 30-409 118-500 (966)
13 KOG4626 O-linked N-acetylgluco 99.9 2E-24 4.3E-29 186.8 29.3 414 9-430 60-487 (966)
14 PRK11788 tetratricopeptide rep 99.9 1.3E-23 2.9E-28 189.3 30.8 294 140-436 46-355 (389)
15 PRK11788 tetratricopeptide rep 99.9 1.2E-22 2.6E-27 183.1 31.4 296 35-334 42-354 (389)
16 TIGR00990 3a0801s09 mitochondr 99.9 5.6E-21 1.2E-25 181.1 42.2 385 11-400 141-577 (615)
17 PRK15174 Vi polysaccharide exp 99.9 2.8E-21 6E-26 182.5 39.7 325 69-398 48-385 (656)
18 PRK09782 bacteriophage N4 rece 99.9 7.5E-20 1.6E-24 176.8 45.3 391 28-430 181-708 (987)
19 PRK15174 Vi polysaccharide exp 99.9 1.1E-20 2.3E-25 178.6 37.2 327 100-431 44-384 (656)
20 PRK10049 pgaA outer membrane p 99.9 6.3E-20 1.4E-24 177.0 42.2 92 337-428 363-456 (765)
21 PRK10049 pgaA outer membrane p 99.9 4.4E-20 9.6E-25 178.1 40.7 388 11-402 29-464 (765)
22 PRK09782 bacteriophage N4 rece 99.9 3.9E-19 8.5E-24 171.9 42.1 197 229-430 476-674 (987)
23 PRK14574 hmsH outer membrane p 99.9 3.9E-18 8.4E-23 161.8 41.9 415 9-430 46-515 (822)
24 PRK14574 hmsH outer membrane p 99.9 1E-16 2.3E-21 152.2 42.8 389 35-428 41-479 (822)
25 KOG2002 TPR-containing nuclear 99.8 8.4E-18 1.8E-22 153.4 31.1 417 12-430 251-747 (1018)
26 KOG2002 TPR-containing nuclear 99.8 2.2E-17 4.9E-22 150.7 33.7 420 5-430 207-677 (1018)
27 KOG2003 TPR repeat-containing 99.8 2.8E-17 6E-22 138.0 27.0 272 139-414 429-709 (840)
28 KOG0547 Translocase of outer m 99.8 2.9E-16 6.3E-21 133.0 32.7 388 30-427 117-565 (606)
29 KOG4422 Uncharacterized conser 99.8 1.2E-15 2.5E-20 127.4 31.7 353 19-433 198-595 (625)
30 PF13429 TPR_15: Tetratricopep 99.8 2.2E-19 4.8E-24 153.4 9.9 259 165-427 13-276 (280)
31 KOG0495 HAT repeat protein [RN 99.8 7.4E-15 1.6E-19 128.9 37.0 420 11-438 420-888 (913)
32 KOG1915 Cell cycle control pro 99.8 2.3E-14 4.9E-19 121.3 37.5 410 11-429 87-537 (677)
33 KOG2076 RNA polymerase III tra 99.8 1.2E-15 2.5E-20 138.7 31.2 358 71-438 147-522 (895)
34 KOG2076 RNA polymerase III tra 99.8 2.1E-14 4.6E-19 130.7 36.8 414 11-428 153-695 (895)
35 KOG0495 HAT repeat protein [RN 99.8 7.2E-14 1.6E-18 122.9 37.4 347 42-394 420-782 (913)
36 PRK10747 putative protoheme IX 99.7 1.1E-14 2.4E-19 130.1 31.1 277 41-326 97-389 (398)
37 KOG1915 Cell cycle control pro 99.7 2.5E-13 5.4E-18 115.2 35.9 404 28-436 73-508 (677)
38 KOG1155 Anaphase-promoting com 99.7 1.7E-13 3.8E-18 115.7 34.6 327 95-427 161-494 (559)
39 KOG1126 DNA-binding cell divis 99.7 1.4E-15 3E-20 134.0 21.8 279 143-430 333-622 (638)
40 PRK10747 putative protoheme IX 99.7 2.8E-14 6E-19 127.6 29.9 285 76-395 97-391 (398)
41 PF13429 TPR_15: Tetratricopep 99.7 4.2E-17 9E-22 139.4 11.1 260 33-325 13-275 (280)
42 KOG1155 Anaphase-promoting com 99.7 6.4E-14 1.4E-18 118.3 29.2 297 25-325 161-493 (559)
43 KOG4422 Uncharacterized conser 99.7 2.8E-13 6.1E-18 113.4 32.0 384 28-429 116-552 (625)
44 KOG2003 TPR repeat-containing 99.7 4.6E-14 1E-18 119.0 27.7 185 242-428 502-689 (840)
45 TIGR00540 hemY_coli hemY prote 99.7 4E-14 8.8E-19 127.2 29.1 288 74-394 95-399 (409)
46 KOG0547 Translocase of outer m 99.7 3.7E-13 8E-18 114.5 31.2 383 5-397 125-569 (606)
47 KOG1173 Anaphase-promoting com 99.7 4.4E-13 9.6E-18 116.1 32.2 394 28-428 49-518 (611)
48 TIGR00540 hemY_coli hemY prote 99.7 1.6E-13 3.5E-18 123.4 30.1 285 39-326 95-398 (409)
49 KOG1126 DNA-binding cell divis 99.7 2.2E-14 4.7E-19 126.6 23.3 282 43-328 334-621 (638)
50 COG2956 Predicted N-acetylgluc 99.7 2.7E-13 6E-18 109.3 25.1 230 202-434 114-353 (389)
51 COG2956 Predicted N-acetylgluc 99.7 5.9E-13 1.3E-17 107.5 26.5 281 41-325 48-345 (389)
52 COG3071 HemY Uncharacterized e 99.6 3.8E-12 8.2E-17 106.0 28.3 284 40-331 96-394 (400)
53 COG3071 HemY Uncharacterized e 99.6 6.2E-12 1.4E-16 104.7 29.5 279 111-395 97-391 (400)
54 KOG1129 TPR repeat-containing 99.6 9.9E-14 2.1E-18 112.0 17.4 229 198-430 226-460 (478)
55 TIGR02521 type_IV_pilW type IV 99.6 1.5E-12 3.3E-17 108.7 23.1 198 230-428 31-232 (234)
56 KOG2376 Signal recognition par 99.6 7.2E-11 1.6E-15 103.2 33.3 403 11-425 26-517 (652)
57 PRK12370 invasion protein regu 99.6 3.3E-12 7.2E-17 119.4 26.5 263 159-430 255-537 (553)
58 KOG1173 Anaphase-promoting com 99.5 3.4E-11 7.4E-16 104.7 29.0 400 4-409 58-533 (611)
59 KOG4318 Bicoid mRNA stability 99.5 2.4E-12 5.2E-17 117.3 22.3 271 49-345 11-283 (1088)
60 KOG4162 Predicted calmodulin-b 99.5 1.9E-10 4.1E-15 103.8 33.8 371 57-430 317-785 (799)
61 KOG1840 Kinesin light chain [C 99.5 5.9E-11 1.3E-15 106.0 28.7 233 195-427 199-478 (508)
62 PF12569 NARP1: NMDA receptor- 99.5 2.4E-10 5.2E-15 103.4 32.4 401 11-424 18-516 (517)
63 KOG1129 TPR repeat-containing 99.5 3.3E-12 7.1E-17 103.4 17.7 233 164-400 227-464 (478)
64 KOG1156 N-terminal acetyltrans 99.5 1.6E-09 3.5E-14 96.0 35.2 393 30-430 43-470 (700)
65 PRK12370 invasion protein regu 99.5 8.9E-12 1.9E-16 116.5 22.7 229 194-428 255-502 (553)
66 TIGR02521 type_IV_pilW type IV 99.5 3.9E-11 8.4E-16 100.2 23.7 163 161-326 32-197 (234)
67 KOG1174 Anaphase-promoting com 99.5 3.6E-09 7.7E-14 88.9 33.3 273 128-405 231-511 (564)
68 KOG1174 Anaphase-promoting com 99.5 3E-10 6.6E-15 95.2 26.8 266 94-365 228-504 (564)
69 KOG2047 mRNA splicing factor [ 99.5 4E-09 8.7E-14 93.5 34.5 112 313-425 565-684 (835)
70 KOG4340 Uncharacterized conser 99.4 1E-09 2.2E-14 88.1 27.8 389 31-429 13-444 (459)
71 PRK11189 lipoprotein NlpI; Pro 99.4 1.9E-11 4.2E-16 104.6 19.3 224 170-400 36-271 (296)
72 KOG2047 mRNA splicing factor [ 99.4 1.7E-08 3.8E-13 89.6 37.3 390 30-427 104-614 (835)
73 KOG3785 Uncharacterized conser 99.4 7.6E-09 1.6E-13 85.3 31.9 376 11-397 36-493 (557)
74 PRK11189 lipoprotein NlpI; Pro 99.4 6.9E-10 1.5E-14 95.2 26.8 127 162-290 66-192 (296)
75 PF12569 NARP1: NMDA receptor- 99.4 2.1E-10 4.6E-15 103.8 24.6 257 168-430 12-293 (517)
76 KOG1156 N-terminal acetyltrans 99.4 5E-09 1.1E-13 93.0 31.1 395 27-430 7-436 (700)
77 KOG3785 Uncharacterized conser 99.4 1.5E-08 3.2E-13 83.6 31.0 382 35-430 29-492 (557)
78 PF13041 PPR_2: PPR repeat fam 99.4 1.2E-12 2.5E-17 78.6 5.7 50 26-75 1-50 (50)
79 COG3063 PilF Tfp pilus assembl 99.4 7.6E-10 1.7E-14 85.7 22.0 201 198-400 38-242 (250)
80 KOG1840 Kinesin light chain [C 99.4 2.6E-10 5.6E-15 102.0 22.4 233 161-393 200-478 (508)
81 PF13041 PPR_2: PPR repeat fam 99.4 2.6E-12 5.7E-17 77.1 6.3 50 261-310 1-50 (50)
82 KOG4318 Bicoid mRNA stability 99.4 1.1E-09 2.5E-14 100.3 25.8 206 24-244 21-285 (1088)
83 KOG0548 Molecular co-chaperone 99.4 1.7E-09 3.6E-14 94.0 25.4 96 10-108 15-114 (539)
84 KOG3616 Selective LIM binding 99.4 1.1E-09 2.4E-14 98.5 24.9 311 69-423 621-932 (1636)
85 KOG2376 Signal recognition par 99.3 6.1E-08 1.3E-12 85.4 34.2 387 35-430 19-489 (652)
86 KOG4162 Predicted calmodulin-b 99.3 1.7E-08 3.6E-13 91.6 30.5 371 26-400 321-789 (799)
87 KOG0624 dsRNA-activated protei 99.3 1.8E-08 3.9E-13 82.8 26.7 300 101-403 41-379 (504)
88 COG3063 PilF Tfp pilus assembl 99.3 4.1E-09 8.8E-14 81.7 21.8 193 163-359 38-233 (250)
89 PF04733 Coatomer_E: Coatomer 99.3 1.1E-10 2.3E-15 98.5 14.4 250 137-399 9-270 (290)
90 KOG1125 TPR repeat-containing 99.3 2.9E-10 6.3E-15 99.4 17.2 222 204-428 294-527 (579)
91 KOG0624 dsRNA-activated protei 99.3 7.3E-09 1.6E-13 85.0 23.9 295 132-431 41-373 (504)
92 KOG4340 Uncharacterized conser 99.3 6.2E-09 1.3E-13 83.8 21.5 79 343-422 251-333 (459)
93 cd05804 StaR_like StaR_like; a 99.2 7.1E-08 1.5E-12 86.0 30.8 260 167-429 50-337 (355)
94 PF04733 Coatomer_E: Coatomer 99.1 8.7E-09 1.9E-13 87.1 18.9 244 37-291 10-264 (290)
95 KOG3617 WD40 and TPR repeat-co 99.1 1.6E-06 3.4E-11 79.8 33.5 226 3-257 736-994 (1416)
96 PRK04841 transcriptional regul 99.1 5.1E-07 1.1E-11 91.1 34.2 323 107-429 383-761 (903)
97 cd05804 StaR_like StaR_like; a 99.1 1E-06 2.3E-11 78.6 32.4 198 28-257 6-213 (355)
98 KOG0548 Molecular co-chaperone 99.1 1.6E-07 3.5E-12 81.9 25.4 375 35-430 9-457 (539)
99 KOG3616 Selective LIM binding 99.1 4.7E-07 1E-11 82.2 28.6 26 402-427 998-1023(1636)
100 PLN02789 farnesyltranstransfer 99.1 2E-07 4.4E-12 79.9 23.9 214 209-425 51-299 (320)
101 KOG1070 rRNA processing protei 99.1 3.6E-08 7.7E-13 95.0 20.5 202 227-431 1455-1666(1710)
102 PRK10370 formate-dependent nit 99.0 2.9E-08 6.2E-13 79.3 16.6 120 311-431 52-176 (198)
103 KOG1125 TPR repeat-containing 99.0 4.8E-08 1E-12 85.9 18.2 250 167-420 292-563 (579)
104 KOG1128 Uncharacterized conser 99.0 6.9E-08 1.5E-12 87.2 19.5 218 196-430 399-618 (777)
105 TIGR03302 OM_YfiO outer membra 99.0 5.5E-08 1.2E-12 81.0 18.1 184 227-429 30-233 (235)
106 PRK04841 transcriptional regul 99.0 3E-06 6.5E-11 85.6 33.4 366 30-398 343-764 (903)
107 KOG3617 WD40 and TPR repeat-co 99.0 2.3E-06 5E-11 78.8 28.1 356 24-425 722-1106(1416)
108 KOG0985 Vesicle coat protein c 99.0 1.1E-05 2.4E-10 76.1 32.6 258 132-424 1107-1366(1666)
109 KOG1127 TPR repeat-containing 99.0 4.5E-07 9.7E-12 84.9 23.4 386 43-435 473-922 (1238)
110 KOG1127 TPR repeat-containing 98.9 1.1E-06 2.3E-11 82.5 23.7 411 12-426 473-950 (1238)
111 KOG1914 mRNA cleavage and poly 98.9 3.5E-05 7.6E-10 67.9 36.8 396 25-428 17-501 (656)
112 KOG0985 Vesicle coat protein c 98.9 1.7E-05 3.6E-10 75.0 30.7 341 26-412 982-1326(1666)
113 PLN02789 farnesyltranstransfer 98.9 4.9E-06 1.1E-10 71.5 25.9 231 169-403 46-311 (320)
114 TIGR03302 OM_YfiO outer membra 98.9 4.2E-07 9.2E-12 75.7 18.8 183 193-396 31-234 (235)
115 KOG3081 Vesicle coat complex C 98.9 1.7E-06 3.7E-11 69.0 20.4 157 235-399 113-276 (299)
116 KOG1128 Uncharacterized conser 98.9 3.7E-07 8.1E-12 82.7 18.4 236 95-344 395-634 (777)
117 PRK15359 type III secretion sy 98.9 8.7E-08 1.9E-12 72.4 12.4 105 303-408 29-135 (144)
118 COG5010 TadD Flp pilus assembl 98.8 6.2E-07 1.3E-11 71.4 17.1 163 227-392 64-229 (257)
119 PRK10370 formate-dependent nit 98.8 6.5E-07 1.4E-11 71.5 17.6 118 208-327 52-173 (198)
120 PRK14720 transcript cleavage f 98.8 2.8E-06 6E-11 81.5 24.3 235 128-410 30-268 (906)
121 KOG1070 rRNA processing protei 98.8 2.2E-06 4.8E-11 83.2 23.4 165 163-331 1500-1667(1710)
122 PRK15359 type III secretion sy 98.8 4.3E-07 9.4E-12 68.6 14.2 99 162-262 26-124 (144)
123 KOG3060 Uncharacterized conser 98.8 2.4E-06 5.3E-11 67.6 17.6 196 208-405 25-231 (289)
124 COG5010 TadD Flp pilus assembl 98.7 1.2E-05 2.6E-10 64.3 21.0 158 199-359 70-228 (257)
125 KOG3081 Vesicle coat complex C 98.7 7E-06 1.5E-10 65.6 19.6 151 136-292 115-271 (299)
126 PRK15179 Vi polysaccharide bio 98.7 2.7E-06 5.9E-11 80.6 20.7 129 297-427 85-216 (694)
127 PRK14720 transcript cleavage f 98.7 2.5E-05 5.5E-10 75.1 25.9 57 26-84 29-86 (906)
128 COG4783 Putative Zn-dependent 98.7 5.3E-06 1.1E-10 72.1 19.0 112 309-421 317-430 (484)
129 PF12854 PPR_1: PPR repeat 98.6 5.7E-08 1.2E-12 52.2 4.1 32 93-124 2-33 (34)
130 PF12854 PPR_1: PPR repeat 98.6 4.6E-08 9.9E-13 52.5 3.7 32 293-324 2-33 (34)
131 TIGR02552 LcrH_SycD type III s 98.6 6E-07 1.3E-11 67.5 10.8 97 302-399 21-119 (135)
132 PRK15179 Vi polysaccharide bio 98.6 1.9E-05 4.2E-10 75.0 22.9 129 160-291 86-216 (694)
133 COG4783 Putative Zn-dependent 98.6 5.4E-05 1.2E-09 66.1 21.9 107 275-384 318-427 (484)
134 PRK15363 pathogenicity island 98.6 1.1E-06 2.4E-11 65.2 10.1 95 335-429 37-133 (157)
135 PF07079 DUF1347: Protein of u 98.5 0.00045 9.8E-09 59.9 28.5 414 3-426 12-522 (549)
136 KOG3060 Uncharacterized conser 98.5 4.1E-05 8.9E-10 60.9 18.9 187 173-363 25-222 (289)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.4E-06 5.1E-11 74.9 13.5 120 303-426 174-295 (395)
138 TIGR02552 LcrH_SycD type III s 98.5 7.6E-06 1.6E-10 61.5 14.2 90 201-291 23-113 (135)
139 KOG1914 mRNA cleavage and poly 98.5 0.00067 1.4E-08 60.2 32.7 368 60-431 17-467 (656)
140 KOG0550 Molecular chaperone (D 98.5 4.4E-06 9.5E-11 70.9 13.3 158 272-432 178-354 (486)
141 KOG2053 Mitochondrial inherita 98.5 0.0012 2.6E-08 62.2 35.2 406 11-433 23-507 (932)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.6E-05 3.4E-10 69.8 16.0 123 133-257 173-295 (395)
143 PF09976 TPR_21: Tetratricopep 98.4 3.7E-05 8.1E-10 58.3 15.8 124 163-288 15-143 (145)
144 PF09976 TPR_21: Tetratricopep 98.4 2.9E-05 6.3E-10 58.9 14.8 85 306-390 56-143 (145)
145 cd00189 TPR Tetratricopeptide 98.4 6E-06 1.3E-10 57.6 9.8 94 336-429 3-98 (100)
146 PF12895 Apc3: Anaphase-promot 98.3 3.5E-07 7.7E-12 62.0 3.1 78 346-424 2-83 (84)
147 TIGR02795 tol_pal_ybgF tol-pal 98.3 6.5E-06 1.4E-10 60.3 10.1 59 370-428 44-105 (119)
148 PF13414 TPR_11: TPR repeat; P 98.3 1.5E-06 3.3E-11 56.4 5.7 66 364-429 2-68 (69)
149 TIGR00756 PPR pentatricopeptid 98.3 1.3E-06 2.8E-11 47.7 4.2 34 30-63 2-35 (35)
150 COG3898 Uncharacterized membra 98.3 0.0017 3.8E-08 55.3 26.2 251 171-436 131-398 (531)
151 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.3E-05 2.9E-10 58.6 10.7 103 300-402 4-113 (119)
152 KOG0550 Molecular chaperone (D 98.3 0.00018 3.9E-09 61.5 18.1 335 72-427 58-422 (486)
153 PF13812 PPR_3: Pentatricopept 98.3 1.4E-06 3.1E-11 47.2 4.0 33 29-61 2-34 (34)
154 PF13432 TPR_16: Tetratricopep 98.3 2.6E-06 5.6E-11 54.5 5.7 60 371-430 3-62 (65)
155 COG4235 Cytochrome c biogenesi 98.3 1.9E-05 4.1E-10 64.9 11.7 109 331-439 154-267 (287)
156 KOG2041 WD40 repeat protein [G 98.2 0.004 8.6E-08 57.3 27.0 201 25-256 689-904 (1189)
157 COG5107 RNA14 Pre-mRNA 3'-end 98.2 0.0028 6E-08 55.2 28.5 405 17-428 29-531 (660)
158 TIGR00756 PPR pentatricopeptid 98.2 2.9E-06 6.4E-11 46.3 4.5 33 265-297 2-34 (35)
159 PRK15363 pathogenicity island 98.2 0.00011 2.4E-09 54.7 13.3 100 157-258 32-131 (157)
160 PLN03088 SGT1, suppressor of 98.2 8.2E-06 1.8E-10 71.9 8.6 105 304-409 8-114 (356)
161 KOG0553 TPR repeat-containing 98.2 2E-05 4.3E-10 64.4 9.9 100 309-409 92-193 (304)
162 PF13812 PPR_3: Pentatricopept 98.2 4.9E-06 1.1E-10 45.0 4.4 33 264-296 2-34 (34)
163 cd00189 TPR Tetratricopeptide 98.2 5.9E-05 1.3E-09 52.4 11.2 92 164-257 4-95 (100)
164 PRK02603 photosystem I assembl 98.1 4.9E-05 1.1E-09 59.7 10.1 94 336-429 38-150 (172)
165 PF14938 SNAP: Soluble NSF att 98.1 0.0011 2.3E-08 56.8 18.9 128 232-359 116-263 (282)
166 PF14559 TPR_19: Tetratricopep 98.0 6.3E-06 1.4E-10 53.3 3.9 55 376-430 2-56 (68)
167 PF08579 RPM2: Mitochondrial r 98.0 0.0001 2.2E-09 50.9 9.6 81 30-110 27-116 (120)
168 PRK10866 outer membrane biogen 98.0 0.0022 4.7E-08 53.2 19.6 175 236-426 38-239 (243)
169 PF13371 TPR_9: Tetratricopept 98.0 2.5E-05 5.5E-10 51.2 6.5 58 373-430 3-60 (73)
170 PLN03088 SGT1, suppressor of 98.0 0.00025 5.3E-09 62.7 14.5 98 167-266 9-106 (356)
171 PRK10153 DNA-binding transcrip 98.0 0.00017 3.6E-09 66.6 13.9 63 366-429 421-483 (517)
172 PRK10866 outer membrane biogen 98.0 0.003 6.5E-08 52.4 19.9 59 34-94 38-100 (243)
173 CHL00033 ycf3 photosystem I as 98.0 6.3E-05 1.4E-09 58.8 9.5 93 333-425 35-139 (168)
174 KOG2280 Vacuolar assembly/sort 98.0 0.014 3.1E-07 54.2 29.4 114 295-423 681-794 (829)
175 PF14938 SNAP: Soluble NSF att 98.0 0.0021 4.6E-08 55.0 19.3 201 30-257 37-264 (282)
176 PF13432 TPR_16: Tetratricopep 97.9 3.2E-05 6.9E-10 49.3 5.8 61 339-399 3-65 (65)
177 PF10037 MRP-S27: Mitochondria 97.9 0.00023 4.9E-09 63.1 12.6 122 190-311 61-186 (429)
178 PF12895 Apc3: Anaphase-promot 97.9 6E-05 1.3E-09 51.0 7.3 15 272-286 67-81 (84)
179 PRK02603 photosystem I assembl 97.9 0.00071 1.5E-08 53.1 14.4 90 160-250 35-126 (172)
180 COG4700 Uncharacterized protei 97.9 0.0015 3.3E-08 49.7 14.9 126 295-421 86-215 (251)
181 PF05843 Suf: Suppressor of fo 97.9 0.00063 1.4E-08 57.9 15.0 142 161-306 2-148 (280)
182 PF01535 PPR: PPR repeat; Int 97.9 1.4E-05 3E-10 42.1 3.2 29 30-58 2-30 (31)
183 PRK10153 DNA-binding transcrip 97.9 0.00052 1.1E-08 63.4 15.2 138 261-400 335-488 (517)
184 KOG2053 Mitochondrial inherita 97.9 0.024 5.1E-07 54.0 37.8 410 4-421 50-563 (932)
185 PF05843 Suf: Suppressor of fo 97.9 0.00035 7.5E-09 59.5 13.1 131 265-397 3-139 (280)
186 PF12688 TPR_5: Tetratrico pep 97.9 0.0015 3.2E-08 47.1 13.5 57 167-223 8-66 (120)
187 PF14559 TPR_19: Tetratricopep 97.8 0.00011 2.3E-09 47.4 7.1 60 207-267 3-62 (68)
188 KOG0553 TPR repeat-containing 97.8 0.00032 7E-09 57.6 11.0 100 168-269 89-188 (304)
189 PF01535 PPR: PPR repeat; Int 97.8 3.1E-05 6.8E-10 40.7 3.6 29 265-293 2-30 (31)
190 PF12688 TPR_5: Tetratrico pep 97.8 0.00057 1.2E-08 49.1 10.8 56 368-423 41-99 (120)
191 COG4700 Uncharacterized protei 97.8 0.0054 1.2E-07 46.8 16.1 133 260-392 86-220 (251)
192 PRK10803 tol-pal system protei 97.8 0.00024 5.1E-09 59.3 10.2 59 369-427 184-245 (263)
193 CHL00033 ycf3 photosystem I as 97.8 0.0013 2.9E-08 51.3 13.9 80 161-241 36-117 (168)
194 PF04840 Vps16_C: Vps16, C-ter 97.8 0.02 4.4E-07 49.4 25.9 106 300-421 179-284 (319)
195 PRK15331 chaperone protein Sic 97.8 0.00033 7.2E-09 52.5 9.4 85 343-427 47-133 (165)
196 PF10037 MRP-S27: Mitochondria 97.8 0.00086 1.9E-08 59.5 13.6 119 158-276 64-186 (429)
197 PF08579 RPM2: Mitochondrial r 97.7 0.00095 2.1E-08 46.2 10.3 80 163-242 28-116 (120)
198 PF04840 Vps16_C: Vps16, C-ter 97.7 0.024 5.3E-07 48.9 30.9 103 237-357 184-286 (319)
199 PF13525 YfiO: Outer membrane 97.7 0.003 6.5E-08 51.0 14.9 165 237-419 12-198 (203)
200 KOG2796 Uncharacterized conser 97.6 0.022 4.8E-07 46.2 19.8 134 266-399 180-320 (366)
201 PF06239 ECSIT: Evolutionarily 97.6 0.00066 1.4E-08 53.2 9.7 98 16-113 33-153 (228)
202 KOG2796 Uncharacterized conser 97.6 0.0072 1.6E-07 48.8 15.3 130 163-292 180-315 (366)
203 PF13525 YfiO: Outer membrane 97.6 0.0095 2.1E-07 48.1 16.4 63 31-95 8-74 (203)
204 PF13414 TPR_11: TPR repeat; P 97.6 0.00042 9.1E-09 44.7 7.0 54 235-288 8-63 (69)
205 KOG1130 Predicted G-alpha GTPa 97.6 0.00078 1.7E-08 57.8 9.8 127 301-427 198-343 (639)
206 COG4235 Cytochrome c biogenesi 97.6 0.0076 1.7E-07 50.0 15.2 100 227-327 153-256 (287)
207 PF13428 TPR_14: Tetratricopep 97.5 0.00019 4.1E-09 41.3 3.9 42 366-407 2-43 (44)
208 PF06239 ECSIT: Evolutionarily 97.5 0.0013 2.7E-08 51.7 9.4 99 250-348 34-153 (228)
209 COG3898 Uncharacterized membra 97.5 0.056 1.2E-06 46.6 27.1 241 111-359 133-389 (531)
210 PRK10803 tol-pal system protei 97.5 0.0016 3.6E-08 54.4 10.6 98 300-399 145-251 (263)
211 PF13431 TPR_17: Tetratricopep 97.5 9.4E-05 2E-09 39.6 2.1 34 387-420 1-34 (34)
212 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00076 1.6E-08 59.4 8.3 97 332-431 74-177 (453)
213 KOG1538 Uncharacterized conser 97.4 0.049 1.1E-06 50.1 19.5 255 100-393 558-845 (1081)
214 PF13281 DUF4071: Domain of un 97.4 0.055 1.2E-06 47.3 19.2 163 235-399 146-339 (374)
215 KOG2114 Vacuolar assembly/sort 97.4 0.14 3.1E-06 48.7 27.8 163 12-186 349-516 (933)
216 PF07079 DUF1347: Protein of u 97.3 0.098 2.1E-06 46.1 27.9 201 196-403 299-529 (549)
217 PF13424 TPR_12: Tetratricopep 97.3 0.00074 1.6E-08 44.8 5.7 62 366-427 6-74 (78)
218 KOG1130 Predicted G-alpha GTPa 97.3 0.0034 7.3E-08 54.0 10.4 130 197-326 197-343 (639)
219 KOG1538 Uncharacterized conser 97.3 0.027 5.9E-07 51.6 16.5 90 194-292 746-846 (1081)
220 PF13371 TPR_9: Tetratricopept 97.3 0.0021 4.5E-08 42.0 7.5 50 207-257 7-56 (73)
221 PF03704 BTAD: Bacterial trans 97.3 0.00094 2E-08 50.8 6.6 69 366-434 63-136 (146)
222 KOG2041 WD40 repeat protein [G 97.3 0.16 3.5E-06 47.3 24.9 156 41-220 747-903 (1189)
223 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.13 2.8E-06 45.3 24.3 68 2-73 49-119 (660)
224 COG4105 ComL DNA uptake lipopr 97.2 0.086 1.9E-06 43.0 17.4 172 241-432 45-236 (254)
225 PRK15331 chaperone protein Sic 97.2 0.027 5.8E-07 42.6 12.7 92 165-258 42-133 (165)
226 PF03704 BTAD: Bacterial trans 97.1 0.021 4.6E-07 43.3 12.8 69 266-335 65-138 (146)
227 PF13512 TPR_18: Tetratricopep 97.1 0.015 3.2E-07 42.8 11.0 89 340-428 17-128 (142)
228 KOG1585 Protein required for f 97.1 0.06 1.3E-06 43.3 14.8 204 161-389 32-251 (308)
229 PF13424 TPR_12: Tetratricopep 97.1 0.0013 2.9E-08 43.6 4.9 60 335-394 7-75 (78)
230 COG1729 Uncharacterized protei 97.0 0.0064 1.4E-07 49.8 9.4 98 301-399 145-249 (262)
231 PF09205 DUF1955: Domain of un 97.0 0.014 3.1E-07 41.7 9.8 141 273-431 12-152 (161)
232 COG0457 NrfG FOG: TPR repeat [ 97.0 0.15 3.2E-06 42.3 26.2 222 174-397 37-268 (291)
233 KOG0543 FKBP-type peptidyl-pro 96.9 0.0052 1.1E-07 53.0 7.8 126 303-428 213-355 (397)
234 COG4785 NlpI Lipoprotein NlpI, 96.8 0.18 3.8E-06 39.9 14.4 27 401-427 239-265 (297)
235 PF13281 DUF4071: Domain of un 96.7 0.39 8.5E-06 42.2 19.5 98 165-262 146-258 (374)
236 COG1729 Uncharacterized protei 96.7 0.049 1.1E-06 44.8 11.7 91 335-428 144-244 (262)
237 PRK11906 transcriptional regul 96.7 0.1 2.3E-06 46.5 14.5 108 313-422 319-430 (458)
238 KOG0543 FKBP-type peptidyl-pro 96.7 0.034 7.5E-07 48.2 11.3 64 198-262 260-323 (397)
239 KOG4555 TPR repeat-containing 96.6 0.029 6.3E-07 40.1 8.4 51 308-359 53-103 (175)
240 KOG1941 Acetylcholine receptor 96.6 0.055 1.2E-06 46.1 11.5 224 170-393 16-274 (518)
241 KOG1258 mRNA processing protei 96.6 0.62 1.3E-05 42.9 31.7 382 27-413 44-489 (577)
242 PF04053 Coatomer_WDAD: Coatom 96.5 0.3 6.5E-06 44.5 16.9 157 36-219 269-426 (443)
243 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.1 2.2E-06 46.5 13.3 61 196-257 76-139 (453)
244 COG0457 NrfG FOG: TPR repeat [ 96.5 0.4 8.6E-06 39.6 26.4 196 231-427 60-264 (291)
245 PF10300 DUF3808: Protein of u 96.4 0.21 4.5E-06 46.2 15.5 116 311-428 246-376 (468)
246 PF04053 Coatomer_WDAD: Coatom 96.4 0.2 4.4E-06 45.6 15.0 166 168-365 269-434 (443)
247 KOG2610 Uncharacterized conser 96.4 0.24 5.2E-06 42.0 14.0 148 242-391 115-273 (491)
248 PRK11906 transcriptional regul 96.4 0.054 1.2E-06 48.2 10.9 118 313-430 273-403 (458)
249 COG3118 Thioredoxin domain-con 96.3 0.51 1.1E-05 39.5 16.4 121 169-291 143-264 (304)
250 PF12921 ATP13: Mitochondrial 96.3 0.048 1E-06 39.8 8.7 48 294-341 48-96 (126)
251 PF09205 DUF1955: Domain of un 96.3 0.27 5.8E-06 35.5 14.6 137 171-330 13-152 (161)
252 PF07719 TPR_2: Tetratricopept 96.3 0.013 2.9E-07 31.1 4.4 32 367-398 3-34 (34)
253 PF12921 ATP13: Mitochondrial 96.3 0.078 1.7E-06 38.7 9.5 98 297-412 1-101 (126)
254 KOG3941 Intermediate in Toll s 96.2 0.051 1.1E-06 44.6 9.0 109 17-125 54-186 (406)
255 PF00515 TPR_1: Tetratricopept 96.2 0.011 2.4E-07 31.5 3.7 32 366-397 2-33 (34)
256 PF07035 Mic1: Colon cancer-as 96.1 0.32 7E-06 37.3 12.5 57 163-223 92-148 (167)
257 KOG1586 Protein required for f 96.1 0.56 1.2E-05 37.7 15.3 23 376-398 165-187 (288)
258 PF13512 TPR_18: Tetratricopep 96.1 0.2 4.3E-06 37.0 10.9 117 269-400 16-134 (142)
259 COG3118 Thioredoxin domain-con 96.0 0.77 1.7E-05 38.5 17.5 140 203-347 142-286 (304)
260 COG4649 Uncharacterized protei 96.0 0.5 1.1E-05 36.0 12.9 52 275-326 144-195 (221)
261 smart00299 CLH Clathrin heavy 95.9 0.49 1.1E-05 35.5 14.8 125 267-410 11-136 (140)
262 PF02259 FAT: FAT domain; Int 95.9 1.2 2.6E-05 39.7 21.6 149 262-412 145-305 (352)
263 KOG3941 Intermediate in Toll s 95.9 0.077 1.7E-06 43.6 8.6 99 250-348 54-173 (406)
264 PF10300 DUF3808: Protein of u 95.9 1.4 3E-05 40.9 18.0 161 163-326 191-375 (468)
265 COG4105 ComL DNA uptake lipopr 95.8 0.87 1.9E-05 37.4 19.3 79 29-109 36-117 (254)
266 KOG4234 TPR repeat-containing 95.8 0.041 9E-07 42.7 6.4 99 307-407 104-210 (271)
267 KOG0890 Protein kinase of the 95.8 3.8 8.3E-05 44.6 23.9 311 103-431 1388-1734(2382)
268 PF08631 SPO22: Meiosis protei 95.7 1.2 2.5E-05 38.2 23.7 18 375-392 256-273 (278)
269 COG4649 Uncharacterized protei 95.7 0.32 7E-06 37.0 10.6 120 274-393 69-195 (221)
270 KOG4555 TPR repeat-containing 95.7 0.045 9.8E-07 39.2 5.9 91 340-430 50-146 (175)
271 KOG2610 Uncharacterized conser 95.6 0.38 8.1E-06 40.9 11.8 152 206-359 114-273 (491)
272 PF04184 ST7: ST7 protein; In 95.6 0.98 2.1E-05 40.8 14.8 56 304-359 265-321 (539)
273 PF13428 TPR_14: Tetratricopep 95.4 0.051 1.1E-06 31.0 4.7 28 234-261 5-32 (44)
274 KOG1941 Acetylcholine receptor 95.4 1.6 3.5E-05 37.7 15.6 221 139-359 16-272 (518)
275 smart00299 CLH Clathrin heavy 95.3 0.87 1.9E-05 34.1 16.0 44 67-111 11-54 (140)
276 KOG1585 Protein required for f 95.2 1.4 3.1E-05 35.8 16.9 56 301-357 193-251 (308)
277 PF04184 ST7: ST7 protein; In 95.1 0.59 1.3E-05 42.2 12.2 64 336-399 262-330 (539)
278 PRK09687 putative lyase; Provi 95.1 1.9 4.1E-05 36.9 26.1 137 158-308 140-277 (280)
279 PF08631 SPO22: Meiosis protei 95.1 1.9 4.2E-05 36.9 24.3 21 406-426 253-273 (278)
280 PF13176 TPR_7: Tetratricopept 95.1 0.05 1.1E-06 29.4 3.6 26 401-426 1-26 (36)
281 COG3629 DnrI DNA-binding trans 95.0 0.31 6.8E-06 40.9 9.7 77 231-307 154-236 (280)
282 KOG1920 IkappaB kinase complex 94.9 4.8 0.00011 40.7 21.1 89 192-290 932-1026(1265)
283 PF13176 TPR_7: Tetratricopept 94.9 0.051 1.1E-06 29.4 3.4 28 367-394 1-28 (36)
284 COG3629 DnrI DNA-binding trans 94.9 0.17 3.6E-06 42.5 7.8 60 368-427 156-215 (280)
285 PF13181 TPR_8: Tetratricopept 94.8 0.061 1.3E-06 28.5 3.6 30 367-396 3-32 (34)
286 PF04097 Nic96: Nup93/Nic96; 94.8 4.1 8.9E-05 39.4 18.5 87 339-425 420-531 (613)
287 PF02259 FAT: FAT domain; Int 94.7 2.9 6.3E-05 37.2 18.5 66 363-428 144-213 (352)
288 KOG1258 mRNA processing protei 94.7 3.7 8E-05 38.2 29.2 360 14-379 62-489 (577)
289 PF00637 Clathrin: Region in C 94.7 0.067 1.4E-06 40.4 4.8 84 69-155 13-96 (143)
290 PF09613 HrpB1_HrpK: Bacterial 94.6 1.5 3.2E-05 33.3 13.3 55 207-262 22-76 (160)
291 PRK09687 putative lyase; Provi 94.5 2.7 5.8E-05 35.9 26.5 26 370-396 240-265 (280)
292 PF13170 DUF4003: Protein of u 94.5 2.8 6.1E-05 36.0 16.5 127 213-341 80-225 (297)
293 PF09613 HrpB1_HrpK: Bacterial 94.4 0.38 8.2E-06 36.4 7.9 72 344-415 21-94 (160)
294 TIGR02561 HrpB1_HrpK type III 94.4 0.35 7.6E-06 35.9 7.5 70 345-414 22-93 (153)
295 PRK11619 lytic murein transgly 94.4 5.4 0.00012 38.7 30.8 115 276-392 254-373 (644)
296 PRK15180 Vi polysaccharide bio 94.2 1 2.2E-05 40.5 11.2 124 274-400 300-426 (831)
297 PF07035 Mic1: Colon cancer-as 94.1 2.1 4.6E-05 32.9 14.1 133 48-188 14-148 (167)
298 KOG2280 Vacuolar assembly/sort 94.0 6.1 0.00013 37.9 33.9 310 93-425 427-770 (829)
299 KOG4648 Uncharacterized conser 93.9 0.79 1.7E-05 39.1 9.5 88 238-326 105-193 (536)
300 KOG4648 Uncharacterized conser 93.8 0.15 3.3E-06 43.2 5.3 95 304-400 103-200 (536)
301 PF13174 TPR_6: Tetratricopept 93.7 0.15 3.3E-06 26.6 3.7 27 371-397 6-32 (33)
302 PF10602 RPN7: 26S proteasome 93.4 2.9 6.3E-05 32.8 11.7 61 266-326 39-101 (177)
303 PF10602 RPN7: 26S proteasome 93.4 2.6 5.7E-05 33.1 11.5 63 161-223 37-101 (177)
304 KOG2114 Vacuolar assembly/sort 93.3 8.6 0.00019 37.5 25.9 136 11-157 382-518 (933)
305 PF00515 TPR_1: Tetratricopept 93.2 0.24 5.2E-06 26.2 4.0 27 233-259 4-30 (34)
306 PF13431 TPR_17: Tetratricopep 93.0 0.19 4E-06 26.7 3.2 23 227-249 10-32 (34)
307 PF07719 TPR_2: Tetratricopept 92.9 0.27 5.9E-06 25.8 4.0 29 233-261 4-32 (34)
308 TIGR02561 HrpB1_HrpK type III 92.9 3 6.4E-05 31.2 12.3 52 208-260 23-74 (153)
309 PF13374 TPR_10: Tetratricopep 92.8 0.29 6.3E-06 27.3 4.1 27 367-393 4-30 (42)
310 KOG0890 Protein kinase of the 92.5 20 0.00044 39.7 24.3 313 68-395 1388-1732(2382)
311 PF13170 DUF4003: Protein of u 92.5 6.5 0.00014 33.9 15.6 131 176-308 78-227 (297)
312 PF00637 Clathrin: Region in C 92.4 0.21 4.5E-06 37.7 4.1 84 270-360 14-97 (143)
313 KOG2066 Vacuolar assembly/sort 92.3 11 0.00025 36.4 26.1 68 301-379 637-704 (846)
314 KOG4570 Uncharacterized conser 92.2 1.9 4.1E-05 36.5 9.4 101 225-327 59-164 (418)
315 KOG4234 TPR repeat-containing 92.0 2.7 5.9E-05 33.1 9.4 93 168-262 103-200 (271)
316 KOG2066 Vacuolar assembly/sort 92.0 12 0.00027 36.1 25.5 101 70-172 363-467 (846)
317 KOG1586 Protein required for f 92.0 5.8 0.00013 32.3 14.1 16 171-186 25-40 (288)
318 KOG2396 HAT (Half-A-TPR) repea 91.7 10 0.00022 34.6 30.3 98 330-427 456-558 (568)
319 PF07721 TPR_4: Tetratricopept 91.7 0.25 5.5E-06 24.3 2.6 23 401-423 3-25 (26)
320 COG4785 NlpI Lipoprotein NlpI, 91.7 6 0.00013 31.8 16.0 179 208-395 78-267 (297)
321 PF13174 TPR_6: Tetratricopept 91.6 0.32 7E-06 25.3 3.1 29 401-429 2-30 (33)
322 PF13374 TPR_10: Tetratricopep 91.5 0.39 8.5E-06 26.7 3.6 28 401-428 4-31 (42)
323 KOG1920 IkappaB kinase complex 91.4 19 0.00041 36.9 19.4 136 106-257 916-1053(1265)
324 PRK10941 hypothetical protein; 91.3 1.4 3E-05 37.2 8.0 64 367-430 183-246 (269)
325 PF06552 TOM20_plant: Plant sp 90.9 6.3 0.00014 30.7 10.6 24 248-271 98-121 (186)
326 KOG0276 Vesicle coat complex C 90.9 8.6 0.00019 36.0 12.7 100 242-360 649-748 (794)
327 cd00923 Cyt_c_Oxidase_Va Cytoc 90.8 2.6 5.7E-05 28.7 7.2 45 178-222 25-69 (103)
328 COG4455 ImpE Protein of avirul 90.7 1.1 2.4E-05 35.7 6.3 63 337-399 5-69 (273)
329 PF11207 DUF2989: Protein of u 90.7 3.3 7.1E-05 32.8 8.9 68 80-148 123-197 (203)
330 PF13181 TPR_8: Tetratricopept 90.6 0.65 1.4E-05 24.4 3.8 29 401-429 3-31 (34)
331 smart00028 TPR Tetratricopepti 90.5 0.6 1.3E-05 23.6 3.7 27 370-396 6-32 (34)
332 PF06552 TOM20_plant: Plant sp 90.4 0.72 1.6E-05 35.6 5.0 108 314-430 7-138 (186)
333 TIGR03504 FimV_Cterm FimV C-te 90.4 0.54 1.2E-05 26.7 3.3 26 404-429 4-29 (44)
334 cd00923 Cyt_c_Oxidase_Va Cytoc 90.3 2.5 5.5E-05 28.7 6.8 60 46-106 25-84 (103)
335 COG2909 MalT ATP-dependent tra 90.2 20 0.00044 35.4 27.7 218 204-424 424-684 (894)
336 KOG1464 COP9 signalosome, subu 90.2 9.8 0.00021 31.7 14.0 48 209-256 41-91 (440)
337 KOG1550 Extracellular protein 90.1 18 0.00039 34.7 23.2 275 145-428 228-538 (552)
338 PF02284 COX5A: Cytochrome c o 90.1 3 6.5E-05 28.7 7.1 46 179-224 29-74 (108)
339 PF07163 Pex26: Pex26 protein; 89.9 6.9 0.00015 32.8 10.4 88 166-253 89-181 (309)
340 PF10345 Cohesin_load: Cohesin 89.8 21 0.00045 34.8 25.6 48 376-423 372-428 (608)
341 PF11207 DUF2989: Protein of u 89.8 3.1 6.7E-05 33.0 8.1 71 281-352 124-197 (203)
342 COG2976 Uncharacterized protei 89.4 9.2 0.0002 30.2 16.2 90 305-397 96-191 (207)
343 PF14853 Fis1_TPR_C: Fis1 C-te 89.1 1.1 2.5E-05 26.7 4.2 33 369-401 5-37 (53)
344 COG4455 ImpE Protein of avirul 88.9 11 0.00024 30.4 10.4 75 267-342 5-81 (273)
345 KOG1550 Extracellular protein 88.8 23 0.00049 34.0 20.5 175 176-359 228-423 (552)
346 COG3947 Response regulator con 88.5 14 0.00031 31.2 15.3 62 366-427 280-341 (361)
347 KOG4507 Uncharacterized conser 88.4 2.1 4.6E-05 39.6 7.2 95 311-405 620-716 (886)
348 KOG0276 Vesicle coat complex C 88.3 23 0.0005 33.4 13.6 26 299-324 667-692 (794)
349 KOG1464 COP9 signalosome, subu 88.2 14 0.0003 30.8 20.4 89 234-323 149-256 (440)
350 KOG0545 Aryl-hydrocarbon recep 88.1 2.5 5.4E-05 34.5 6.7 57 372-428 237-293 (329)
351 PRK11619 lytic murein transgly 88.0 28 0.0006 34.0 35.9 117 208-325 254-373 (644)
352 COG2976 Uncharacterized protei 88.0 12 0.00025 29.7 14.6 90 204-293 98-189 (207)
353 KOG4642 Chaperone-dependent E3 87.8 1.7 3.7E-05 35.2 5.6 85 308-394 20-107 (284)
354 TIGR02508 type_III_yscG type I 87.4 7.4 0.00016 26.8 9.3 87 210-302 20-106 (115)
355 COG1747 Uncharacterized N-term 87.3 24 0.00052 32.6 23.1 63 194-259 65-127 (711)
356 PF02284 COX5A: Cytochrome c o 87.2 7.9 0.00017 26.8 9.0 60 212-271 27-87 (108)
357 TIGR02508 type_III_yscG type I 87.0 7.9 0.00017 26.7 8.4 58 138-198 48-105 (115)
358 KOG4570 Uncharacterized conser 86.8 6.8 0.00015 33.4 8.7 95 263-359 64-161 (418)
359 PF14561 TPR_20: Tetratricopep 86.6 2.3 5E-05 28.9 5.1 53 364-416 21-75 (90)
360 PRK13800 putative oxidoreducta 86.6 42 0.00091 34.6 27.4 247 60-326 632-880 (897)
361 KOG1308 Hsp70-interacting prot 86.6 0.77 1.7E-05 39.2 3.3 117 309-427 125-243 (377)
362 COG3947 Response regulator con 86.2 20 0.00043 30.4 13.8 58 267-325 283-340 (361)
363 PF09477 Type_III_YscG: Bacter 85.7 9.9 0.00021 26.6 9.5 86 210-301 21-106 (116)
364 TIGR03504 FimV_Cterm FimV C-te 85.5 2.5 5.5E-05 24.0 4.0 24 166-189 5-28 (44)
365 KOG3364 Membrane protein invol 85.4 6.1 0.00013 29.0 6.8 70 331-400 30-106 (149)
366 smart00386 HAT HAT (Half-A-TPR 85.0 1.9 4.2E-05 22.0 3.4 30 379-408 1-30 (33)
367 KOG0889 Histone acetyltransfer 84.7 69 0.0015 37.6 16.7 20 36-55 2490-2509(3550)
368 smart00028 TPR Tetratricopepti 84.6 2.1 4.5E-05 21.3 3.6 29 400-428 2-30 (34)
369 PF09986 DUF2225: Uncharacteri 84.1 7 0.00015 31.8 7.6 66 367-432 120-198 (214)
370 PF04190 DUF410: Protein of un 83.3 27 0.00058 29.6 15.6 82 332-428 89-170 (260)
371 PF10579 Rapsyn_N: Rapsyn N-te 83.0 3.1 6.7E-05 27.1 4.1 46 377-422 18-66 (80)
372 PRK13800 putative oxidoreducta 82.6 63 0.0014 33.3 26.9 19 332-350 788-806 (897)
373 KOG2063 Vacuolar assembly/sort 82.5 58 0.0013 32.9 17.1 123 13-140 494-637 (877)
374 PF09670 Cas_Cas02710: CRISPR- 82.3 31 0.00067 31.2 11.7 52 240-291 141-197 (379)
375 KOG0376 Serine-threonine phosp 82.3 1.1 2.4E-05 40.2 2.6 98 305-404 11-111 (476)
376 cd08819 CARD_MDA5_2 Caspase ac 81.8 12 0.00027 25.0 6.6 65 82-148 21-85 (88)
377 PF04190 DUF410: Protein of un 81.4 32 0.00069 29.1 17.9 85 94-189 86-170 (260)
378 COG5159 RPN6 26S proteasome re 81.2 23 0.0005 29.9 9.3 33 269-301 9-41 (421)
379 KOG4642 Chaperone-dependent E3 81.0 30 0.00064 28.5 9.8 83 205-289 20-104 (284)
380 PF14669 Asp_Glu_race_2: Putat 80.8 26 0.00056 27.7 12.1 54 201-254 138-205 (233)
381 PRK15180 Vi polysaccharide bio 80.6 46 0.001 30.5 25.9 113 75-189 301-420 (831)
382 KOG2471 TPR repeat-containing 80.5 48 0.001 30.6 14.6 44 369-412 339-382 (696)
383 COG1747 Uncharacterized N-term 80.2 50 0.0011 30.6 21.6 177 159-343 65-249 (711)
384 PF08311 Mad3_BUB1_I: Mad3/BUB 79.9 18 0.00039 26.5 7.8 42 383-424 81-124 (126)
385 PF12862 Apc5: Anaphase-promot 78.5 8.8 0.00019 26.3 5.6 53 376-428 9-70 (94)
386 cd08819 CARD_MDA5_2 Caspase ac 78.1 8.8 0.00019 25.6 5.0 39 141-180 48-86 (88)
387 PF04910 Tcf25: Transcriptiona 77.8 52 0.0011 29.5 13.7 56 372-427 110-167 (360)
388 KOG2471 TPR repeat-containing 77.6 38 0.00082 31.2 10.2 41 40-80 29-69 (696)
389 KOG2396 HAT (Half-A-TPR) repea 77.4 61 0.0013 30.0 29.8 101 295-397 456-563 (568)
390 KOG4507 Uncharacterized conser 77.2 8.7 0.00019 35.8 6.4 88 343-430 617-707 (886)
391 COG4976 Predicted methyltransf 77.0 4.8 0.0001 32.6 4.3 58 343-400 5-64 (287)
392 KOG4077 Cytochrome c oxidase, 76.8 24 0.00052 25.6 7.1 43 181-223 70-112 (149)
393 KOG0686 COP9 signalosome, subu 76.0 59 0.0013 29.2 14.2 15 312-326 318-332 (466)
394 PF04097 Nic96: Nup93/Nic96; 75.9 82 0.0018 30.8 23.4 59 33-92 116-181 (613)
395 KOG3824 Huntingtin interacting 75.4 6 0.00013 33.5 4.6 46 377-422 128-173 (472)
396 KOG0292 Vesicle coat complex C 75.3 49 0.0011 33.0 10.9 178 173-395 606-783 (1202)
397 KOG4077 Cytochrome c oxidase, 75.3 20 0.00044 26.0 6.5 44 82-125 68-111 (149)
398 PF07163 Pex26: Pex26 protein; 74.8 34 0.00073 28.9 8.6 87 67-153 87-182 (309)
399 PF14689 SPOB_a: Sensor_kinase 74.5 9.9 0.00021 23.6 4.4 23 268-290 28-50 (62)
400 PF14863 Alkyl_sulf_dimr: Alky 74.4 15 0.00032 27.5 6.1 63 349-414 57-119 (141)
401 COG2909 MalT ATP-dependent tra 74.3 1E+02 0.0022 31.0 30.0 217 140-359 426-685 (894)
402 PF10366 Vps39_1: Vacuolar sor 74.3 26 0.00056 24.8 7.0 28 161-188 40-67 (108)
403 PF11846 DUF3366: Domain of un 74.1 13 0.00028 29.7 6.3 37 360-396 139-175 (193)
404 PF06957 COPI_C: Coatomer (COP 73.3 74 0.0016 29.1 12.4 46 354-399 287-334 (422)
405 PF10345 Cohesin_load: Cohesin 73.3 96 0.0021 30.3 36.3 398 28-427 59-605 (608)
406 PF12862 Apc5: Anaphase-promot 73.1 16 0.00036 25.0 5.8 26 370-395 46-71 (94)
407 PF10579 Rapsyn_N: Rapsyn N-te 72.3 13 0.00028 24.3 4.6 13 303-315 48-60 (80)
408 KOG0686 COP9 signalosome, subu 72.3 74 0.0016 28.6 14.5 59 131-189 152-216 (466)
409 PF00244 14-3-3: 14-3-3 protei 72.2 56 0.0012 27.2 11.0 18 376-393 180-197 (236)
410 KOG0403 Neoplastic transformat 71.6 81 0.0018 28.8 16.0 64 367-430 511-574 (645)
411 PF14853 Fis1_TPR_C: Fis1 C-te 71.5 14 0.00031 22.0 4.5 26 237-262 8-33 (53)
412 COG0790 FOG: TPR repeat, SEL1 71.1 67 0.0015 27.6 18.3 49 379-430 205-268 (292)
413 PF04910 Tcf25: Transcriptiona 70.8 80 0.0017 28.4 13.5 57 270-326 110-167 (360)
414 KOG0551 Hsp90 co-chaperone CNS 70.0 21 0.00045 30.9 6.6 80 342-421 90-175 (390)
415 KOG3364 Membrane protein invol 69.8 43 0.00093 24.8 8.6 71 192-262 29-103 (149)
416 PF07720 TPR_3: Tetratricopept 69.6 16 0.00034 19.7 4.3 17 371-387 7-23 (36)
417 PF13762 MNE1: Mitochondrial s 68.9 47 0.001 25.0 10.7 50 262-311 78-128 (145)
418 KOG4279 Serine/threonine prote 68.4 1.3E+02 0.0027 29.7 14.7 187 212-400 180-401 (1226)
419 COG2912 Uncharacterized conser 67.7 26 0.00057 29.4 6.7 60 370-429 186-245 (269)
420 COG5108 RPO41 Mitochondrial DN 67.7 32 0.00069 33.0 7.8 74 268-344 33-114 (1117)
421 COG4259 Uncharacterized protei 67.6 38 0.00082 23.4 6.3 53 214-266 56-108 (121)
422 smart00777 Mad3_BUB1_I Mad3/BU 67.3 47 0.001 24.3 7.5 41 383-423 81-123 (125)
423 PRK10941 hypothetical protein; 67.0 68 0.0015 27.3 9.2 19 205-223 191-209 (269)
424 COG0735 Fur Fe2+/Zn2+ uptake r 66.8 28 0.0006 26.3 6.2 63 50-113 8-70 (145)
425 PF11663 Toxin_YhaV: Toxin wit 66.0 11 0.00023 27.7 3.6 30 41-72 108-137 (140)
426 PF13934 ELYS: Nuclear pore co 65.9 75 0.0016 26.2 11.8 21 339-359 114-134 (226)
427 KOG1308 Hsp70-interacting prot 65.7 9.6 0.00021 33.0 3.9 48 174-222 128-175 (377)
428 COG2256 MGS1 ATPase related to 64.6 1.1E+02 0.0024 27.7 12.8 51 159-209 245-298 (436)
429 KOG2908 26S proteasome regulat 64.5 99 0.0022 27.1 9.7 17 206-222 86-102 (380)
430 PF14689 SPOB_a: Sensor_kinase 64.2 26 0.00057 21.7 4.8 19 202-220 30-48 (62)
431 PF11817 Foie-gras_1: Foie gra 63.3 54 0.0012 27.5 8.0 19 35-53 17-35 (247)
432 PF11846 DUF3366: Domain of un 62.8 25 0.00054 28.1 5.8 30 330-359 141-170 (193)
433 KOG4567 GTPase-activating prot 62.7 1E+02 0.0022 26.6 10.3 73 283-360 263-345 (370)
434 cd08326 CARD_CASP9 Caspase act 62.0 21 0.00046 23.8 4.3 31 113-143 45-75 (84)
435 COG4259 Uncharacterized protei 61.8 34 0.00074 23.6 5.1 29 371-399 78-106 (121)
436 PRK10564 maltose regulon perip 61.4 16 0.00035 31.1 4.5 32 30-61 259-290 (303)
437 PRK10564 maltose regulon perip 60.9 22 0.00047 30.4 5.1 39 162-200 259-297 (303)
438 PRK13342 recombination factor 60.9 1.4E+02 0.003 27.5 18.4 117 95-226 173-301 (413)
439 KOG2300 Uncharacterized conser 60.4 1.5E+02 0.0032 27.7 28.3 82 41-122 60-151 (629)
440 COG4976 Predicted methyltransf 60.0 18 0.00039 29.5 4.2 57 308-365 5-62 (287)
441 PF10255 Paf67: RNA polymerase 59.8 99 0.0021 28.2 9.2 56 131-186 124-190 (404)
442 KOG4814 Uncharacterized conser 59.7 34 0.00073 32.6 6.4 88 343-430 364-459 (872)
443 PF11817 Foie-gras_1: Foie gra 59.3 67 0.0014 27.0 7.9 56 369-424 182-243 (247)
444 PF08311 Mad3_BUB1_I: Mad3/BUB 59.1 69 0.0015 23.5 8.9 43 281-323 81-124 (126)
445 PF11663 Toxin_YhaV: Toxin wit 58.9 12 0.00027 27.4 2.9 32 275-308 107-138 (140)
446 PF08424 NRDE-2: NRDE-2, neces 58.6 1.3E+02 0.0028 26.5 16.0 56 215-271 51-107 (321)
447 PF14561 TPR_20: Tetratricopep 58.5 55 0.0012 22.2 8.6 32 227-258 19-50 (90)
448 KOG2422 Uncharacterized conser 58.1 1.7E+02 0.0038 27.8 13.0 115 10-124 251-404 (665)
449 COG5191 Uncharacterized conser 57.9 22 0.00048 30.4 4.6 76 332-407 106-184 (435)
450 COG0735 Fur Fe2+/Zn2+ uptake r 57.2 69 0.0015 24.2 6.9 63 285-348 8-70 (145)
451 KOG0545 Aryl-hydrocarbon recep 56.8 1.2E+02 0.0025 25.4 8.6 61 232-292 232-293 (329)
452 PRK14700 recombination factor 56.6 1.3E+02 0.0029 26.0 12.6 122 94-227 63-198 (300)
453 KOG2659 LisH motif-containing 56.5 1.1E+02 0.0024 25.1 9.5 96 295-392 23-130 (228)
454 PF11838 ERAP1_C: ERAP1-like C 56.0 1.4E+02 0.0031 26.1 18.1 151 280-435 147-311 (324)
455 PF09670 Cas_Cas02710: CRISPR- 55.8 1.6E+02 0.0035 26.7 11.9 57 167-224 138-198 (379)
456 PF11848 DUF3368: Domain of un 55.2 40 0.00086 19.6 5.1 31 172-202 14-44 (48)
457 KOG0376 Serine-threonine phosp 54.7 39 0.00084 31.0 5.9 97 137-237 12-112 (476)
458 PHA02537 M terminase endonucle 54.5 1.2E+02 0.0027 25.0 9.4 115 266-399 86-212 (230)
459 PRK09857 putative transposase; 54.0 1.3E+02 0.0028 26.1 8.9 63 370-432 211-273 (292)
460 PF15469 Sec5: Exocyst complex 53.5 88 0.0019 24.7 7.4 27 413-439 153-179 (182)
461 cd00280 TRFH Telomeric Repeat 53.4 1.1E+02 0.0024 24.2 7.6 68 211-279 85-159 (200)
462 PF04762 IKI3: IKI3 family; I 53.1 2E+02 0.0042 30.0 11.2 195 165-360 699-928 (928)
463 PF07575 Nucleopor_Nup85: Nup8 53.0 1.6E+02 0.0035 28.5 10.3 247 42-307 277-539 (566)
464 PHA02875 ankyrin repeat protei 52.5 1.9E+02 0.0041 26.5 12.0 202 169-389 8-223 (413)
465 KOG2659 LisH motif-containing 52.3 1.3E+02 0.0029 24.7 9.4 63 228-290 24-91 (228)
466 PF13762 MNE1: Mitochondrial s 52.0 1E+02 0.0022 23.3 9.5 83 29-111 40-128 (145)
467 KOG4567 GTPase-activating prot 50.5 1.7E+02 0.0037 25.4 9.8 86 84-170 264-359 (370)
468 KOG2422 Uncharacterized conser 49.5 2.4E+02 0.0053 26.9 14.9 153 270-427 349-515 (665)
469 PF10255 Paf67: RNA polymerase 49.0 51 0.0011 29.9 5.8 61 299-359 123-190 (404)
470 PF08424 NRDE-2: NRDE-2, neces 48.9 1.9E+02 0.0041 25.5 18.0 114 280-395 48-184 (321)
471 PF03745 DUF309: Domain of unk 47.7 67 0.0015 20.0 5.6 17 343-359 9-25 (62)
472 PF12968 DUF3856: Domain of Un 47.6 1.1E+02 0.0023 22.3 8.0 58 368-425 58-126 (144)
473 KOG2581 26S proteasome regulat 47.4 2.2E+02 0.0048 25.9 11.7 23 337-359 213-235 (493)
474 PRK13341 recombination factor 46.7 3.2E+02 0.0069 27.5 13.4 75 171-245 269-348 (725)
475 PRK11639 zinc uptake transcrip 46.4 1.2E+02 0.0025 23.7 6.8 60 54-114 17-76 (169)
476 KOG1498 26S proteasome regulat 46.2 2.3E+02 0.0049 25.6 14.1 93 338-430 136-243 (439)
477 PF05944 Phage_term_smal: Phag 46.2 90 0.002 23.1 5.7 37 362-399 46-82 (132)
478 COG4941 Predicted RNA polymera 45.7 2.1E+02 0.0046 25.2 11.7 117 279-399 272-399 (415)
479 KOG0292 Vesicle coat complex C 45.3 1.6E+02 0.0034 29.8 8.5 98 4-101 998-1122(1202)
480 PF07678 A2M_comp: A-macroglob 45.2 1.5E+02 0.0033 24.8 7.9 44 247-290 116-159 (246)
481 cd08332 CARD_CASP2 Caspase act 45.1 57 0.0012 22.2 4.3 27 113-139 49-75 (90)
482 PF02184 HAT: HAT (Half-A-TPR) 44.9 47 0.001 17.4 3.5 22 44-67 3-24 (32)
483 KOG0530 Protein farnesyltransf 43.4 2.1E+02 0.0045 24.3 12.4 137 299-437 44-185 (318)
484 KOG2034 Vacuolar sorting prote 43.3 3.7E+02 0.0081 27.3 23.6 266 5-290 368-688 (911)
485 COG5159 RPN6 26S proteasome re 43.1 2.2E+02 0.0047 24.5 19.6 93 234-326 129-234 (421)
486 PF11768 DUF3312: Protein of u 43.1 3E+02 0.0065 26.2 10.2 60 267-327 412-473 (545)
487 KOG4814 Uncharacterized conser 42.9 2.1E+02 0.0046 27.7 8.7 84 206-290 365-455 (872)
488 PRK09462 fur ferric uptake reg 42.9 1.1E+02 0.0024 23.1 6.2 61 53-114 7-68 (148)
489 PF09454 Vps23_core: Vps23 cor 42.6 86 0.0019 19.8 5.2 48 61-109 6-53 (65)
490 COG5191 Uncharacterized conser 42.6 77 0.0017 27.4 5.4 70 361-430 103-173 (435)
491 PF09986 DUF2225: Uncharacteri 41.8 1.9E+02 0.0042 23.6 8.3 31 367-397 167-197 (214)
492 KOG1839 Uncharacterized protei 41.6 4.4E+02 0.0096 28.2 11.3 155 203-357 940-1123(1236)
493 PF02847 MA3: MA3 domain; Int 40.9 83 0.0018 22.2 5.0 21 166-186 8-28 (113)
494 cd08323 CARD_APAF1 Caspase act 40.6 92 0.002 21.0 4.7 29 112-140 42-70 (86)
495 KOG4521 Nuclear pore complex, 40.2 4.8E+02 0.01 27.7 14.1 83 198-280 986-1071(1480)
496 PRK14962 DNA polymerase III su 40.1 3.3E+02 0.0071 25.7 11.5 23 173-195 256-278 (472)
497 KOG1463 26S proteasome regulat 39.8 2.7E+02 0.0058 24.7 8.8 136 305-440 11-169 (411)
498 PF11768 DUF3312: Protein of u 39.7 2.8E+02 0.006 26.4 8.9 59 336-394 411-473 (545)
499 COG5187 RPN7 26S proteasome re 38.9 2.6E+02 0.0055 24.1 10.1 29 299-327 116-144 (412)
500 COG0790 FOG: TPR repeat, SEL1 38.7 2.5E+02 0.0055 24.1 20.1 81 175-258 128-219 (292)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.7e-69 Score=524.95 Aligned_cols=434 Identities=35% Similarity=0.646 Sum_probs=399.5
Q ss_pred CcccccccccCChhhHHHHhhhcCCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHH
Q 039362 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE 80 (440)
Q Consensus 1 l~~~y~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (440)
||.+|+++ |++++|.++|++|+.||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+
T Consensus 228 Li~~y~k~--g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 228 LITMYVKC--GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred HHHHHhcC--CCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 46789999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhC-----
Q 039362 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELM----- 155 (440)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----- 155 (440)
.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|..+|+.++.+|++.|++++|.++|++|
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999998888888888888876666666666555554
Q ss_pred -----------------------------------------------------------------CCCchhhHHHHHHHH
Q 039362 156 -----------------------------------------------------------------PERNVVSWSALIDGY 170 (440)
Q Consensus 156 -----------------------------------------------------------------~~~~~~~~~~l~~~~ 170 (440)
.++|..+|+.++.+|
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 344555566666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 039362 171 VKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250 (440)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 250 (440)
++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+++.+.+++..+.+.|+.++..++++|+.+|+++|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 666666666666666654 4788888888888888888888888889888888898899999999999999999999999
Q ss_pred HHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHh-hcCC
Q 039362 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG-KRGM 329 (440)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~ 329 (440)
.+|+.+ .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+
T Consensus 545 ~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 545 NQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 999988 789999999999999999999999999999999999999999999999999999999999999999 5599
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039362 330 VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409 (440)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (440)
.|+..+|+.++.+|.+.|++++|.+++++|+++||..+|+.|+.+|..+|+.+.++...+++.++.|++...|..+...|
T Consensus 622 ~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccChHHHHHHHHHHHhcCCccCCCCCCCC
Q 039362 410 AIFKRWDEARTTREAMETRGVKKYPGWSFVE 440 (440)
Q Consensus 410 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 440 (440)
...|+|++|.++.+.|.+.|+.+.||+||||
T Consensus 702 a~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 702 ADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred HHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 9999999999999999999999999999997
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-68 Score=510.98 Aligned_cols=431 Identities=27% Similarity=0.487 Sum_probs=399.9
Q ss_pred cccccccccCChhhHHHHhhhcC-----CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhch
Q 039362 2 LSFSALSYLGNIDYSCKVLSHLS-----NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRL 76 (440)
Q Consensus 2 ~~~y~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 76 (440)
|..|.+. |++++|.++|+.+. .||..+|+.++.++.+.++++.+..++..|.+.|+.||..+|+.++..|++.
T Consensus 94 i~~l~~~--g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 94 IEKLVAC--GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHHHcC--CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 3445666 88888888888774 4678888888888888888888888888888888888888888888888888
Q ss_pred hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCC-------------------------------
Q 039362 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP------------------------------- 125 (440)
Q Consensus 77 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------------------------- 125 (440)
|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.
T Consensus 172 g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 172 GMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred CCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 88888888888773 4677888888888888888888888887773
Q ss_pred --------CCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 039362 126 --------TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197 (440)
Q Consensus 126 --------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (440)
.+|..+|+.|+.+|++.|++++|.++|+.|.++|..+||.++.+|++.|++++|+++|++|.+.|+.||..|
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 235567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcC
Q 039362 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277 (440)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (440)
|+.++.+|++.|++++|.+++..|.+.|++|+..+++.|+.+|++.|++++|.++|++|. .||..+||.||.+|++.|
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--RKNLISWNALIAGYGNHG 405 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--CCCeeeHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999998 799999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc-CCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 039362 278 FVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFI 356 (440)
Q Consensus 278 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 356 (440)
+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+. |+.|+..+|+.++..|++.|++++|.+++
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999875 99999999999999999999999999999
Q ss_pred hcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCCccCCCC
Q 039362 357 CQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436 (440)
Q Consensus 357 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 436 (440)
++|+..|+..+|+.++.+|...|+.+.|..+++++.+.+|.+..+|..++.+|.+.|++++|.+++++|.+.|+.+.||+
T Consensus 486 ~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~ 565 (697)
T PLN03081 486 RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPAC 565 (697)
T ss_pred HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 039362 437 SFVE 440 (440)
Q Consensus 437 ~~~~ 440 (440)
||||
T Consensus 566 s~i~ 569 (697)
T PLN03081 566 TWIE 569 (697)
T ss_pred eEEE
Confidence 9986
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-63 Score=488.42 Aligned_cols=427 Identities=31% Similarity=0.515 Sum_probs=393.3
Q ss_pred CcccccccccCChhhHHHHhhhcCCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHH
Q 039362 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE 80 (440)
Q Consensus 1 l~~~y~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (440)
|+.+|+++ |+++.|.++|++|++||+.+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|+..++++
T Consensus 127 li~~~~~~--g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 127 MLSMFVRF--GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHHhC--CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 46778899 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHH---------------------
Q 039362 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY--------------------- 139 (440)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~--------------------- 139 (440)
.+.+++..+.+.|+.||..+++.|+.+|++.|+++.|.++|++|..+|..+|++++.+|
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999988877666666666655
Q ss_pred -------------------------------------------------HhcCChHHHHHHHhhCCCCchhhHHHHHHHH
Q 039362 140 -------------------------------------------------AKCGEMNMARQVFELMPERNVVSWSALIDGY 170 (440)
Q Consensus 140 -------------------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 170 (440)
++.|++++|.++|+.|..||..+|+.++.+|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 4566666666777777778888999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 039362 171 VKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250 (440)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 250 (440)
.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.|+.+|++.|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCC
Q 039362 251 IVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330 (440)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 330 (440)
++|++|. .+|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.
T Consensus 445 ~vf~~m~--~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 445 EVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHHHhCC--CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 9999998 78999999999999999999999999999986 58999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCchHHHHHHHH
Q 039362 331 PKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ-PDHDGRYVGLSNVY 409 (440)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~ 409 (440)
++..+++.|+..|.++|++++|.++|+++ .||..+|+.++.+|++.|+.++|.++|++|.+.+ .++..+|..++.+|
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 99999999999999999999999999998 7899999999999999999999999999999877 56777899999999
Q ss_pred HhccChHHHHHHHHHHH-hcCCccCC
Q 039362 410 AIFKRWDEARTTREAME-TRGVKKYP 434 (440)
Q Consensus 410 ~~~g~~~~A~~~~~~~~-~~~~~~~~ 434 (440)
.+.|++++|.++|++|. +.|+.|+.
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCch
Confidence 99999999999999998 56776653
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.6e-63 Score=473.47 Aligned_cols=362 Identities=16% Similarity=0.307 Sum_probs=171.8
Q ss_pred CChhhHHHHhhhcCCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHH
Q 039362 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90 (440)
Q Consensus 11 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 90 (440)
|.+++|.++|+.|..||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.
T Consensus 420 g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~ 499 (1060)
T PLN03218 420 RAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499 (1060)
T ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCC----CCchhhHHHHHHHHHhcCChHHHHHHHhhCC------CCch
Q 039362 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP----TKMSVSWNSMLDGYAKCGEMNMARQVFELMP------ERNV 160 (440)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~ 160 (440)
+.|+.||..+|+.+|.+|++.|++++|.++|+.|. .||..+|+.++.+|++.|++++|.++|++|. .||.
T Consensus 500 ~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 44444444444444444444444444444444442 2344444444444444444444444444442 1344
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 039362 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240 (440)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 240 (440)
.+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HhcCCHHHHHHHHhhhhhc--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHH
Q 039362 241 AKCGAIKEALIVFHGVEKH--QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318 (440)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 318 (440)
++.|++++|.++|+.|.+. .|+..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAl 739 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4444444444444444432 34444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC---CCCccHhHHHHHH
Q 039362 319 YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM---PLEPTASMLGSLL 372 (440)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~p~~~~~~~l~ 372 (440)
++|++|.+.|+.||..+|+.++.+|.+.|++++|.+++++| ++.||..+|+.++
T Consensus 740 elf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44444444444444444444444444444444444444444 3444444444443
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-62 Score=472.41 Aligned_cols=424 Identities=17% Similarity=0.250 Sum_probs=397.7
Q ss_pred ccccccCChhhHHHHhhhcCC-----CChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcH
Q 039362 5 SALSYLGNIDYSCKVLSHLSN-----PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKR 79 (440)
Q Consensus 5 y~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (440)
++++ |++++|.++|+.|+. ++...++.++..|.+.|.++.|..+|+.|.. ||..+|+.++.+|++.|++
T Consensus 380 l~r~--G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 380 LLRD--GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred HHHC--cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCH
Confidence 4455 999999999999974 4566788889999999999999999999864 9999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCC----CCchhhHHHHHHHHHhcCChHHHHHHHhhC
Q 039362 80 ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP----TKMSVSWNSMLDGYAKCGEMNMARQVFELM 155 (440)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 155 (440)
+.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|+.|
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M 533 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 479999999999999999999999999999
Q ss_pred CC----CchhhHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 039362 156 PE----RNVVSWSALIDGYVKCGDYKEALVIFEEMRD--VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229 (440)
Q Consensus 156 ~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 229 (440)
.+ ||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.+++|+
T Consensus 534 ~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~ 613 (1060)
T PLN03218 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 64 8999999999999999999999999999976 67899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhhhhc--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHH
Q 039362 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKH--QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307 (440)
Q Consensus 230 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 307 (440)
..+|+.++.+|++.|++++|.++|++|.+. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++.+
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~a 693 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999876 789999999999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC---CCCccHhHHHHHHHHHHhcCChhHH
Q 039362 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM---PLEPTASMLGSLLTGCMNHGKLDLA 384 (440)
Q Consensus 308 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a 384 (440)
|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++| ++.||..+|+.++.+|.+.|++++|
T Consensus 694 y~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A 773 (1060)
T PLN03218 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999998 7899999999999999999999999
Q ss_pred HHHHHHHHhcC-CCCCchHHHHHHHHHh----c-------------------cChHHHHHHHHHHHhcCCccCC
Q 039362 385 EIVGKKLVELQ-PDHDGRYVGLSNVYAI----F-------------------KRWDEARTTREAMETRGVKKYP 434 (440)
Q Consensus 385 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~~ 434 (440)
.+++++|.+.+ .++..+|+.++..|.+ + +..++|..+|++|++.|+.|+.
T Consensus 774 ~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 774 LDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 99999999988 5566688888765432 1 2346799999999999998764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7e-58 Score=437.34 Aligned_cols=426 Identities=21% Similarity=0.309 Sum_probs=388.4
Q ss_pred CcccccccccCChhhHHHHhhhcCCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHH
Q 039362 1 MLSFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE 80 (440)
Q Consensus 1 l~~~y~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (440)
|+.+|+++ |++++|.++|++|+.||..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|..++.+|++.|..+
T Consensus 164 Li~~y~k~--g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 164 VLLMHVKC--GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHhcC--CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 46789999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCC----
Q 039362 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMP---- 156 (440)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---- 156 (440)
.+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|.++|.++|+.++.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH
Q 039362 157 ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236 (440)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 236 (440)
.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|. .+|..+|+.+
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~l 397 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNAL 397 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999986 4788999999
Q ss_pred HHHHHhcCCHHHHHHHHhhhhhc--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCccHhhHHHHHHHHHcCCC
Q 039362 237 IDMYAKCGAIKEALIVFHGVEKH--QSDVLIWNAMIGGLAMHGFVKESLELFTEMQI-VGITPDEITFLGLLSACAHGGL 313 (440)
Q Consensus 237 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~ 313 (440)
+.+|++.|+.++|.++|++|.+. .||..+|+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++.++++.|+
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence 99999999999999999999864 79999999999999999999999999999976 6999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHH
Q 039362 314 VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPT-ASMLGSLLTGCMNHGKLDLAEIVGKKL 391 (440)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 391 (440)
+++|.++++++ ++.|+..+|+.++.+|...|+++.|..+++++ +..|+ ..+|..++..|++.|++++|.++++.|
T Consensus 478 ~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 478 LDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred HHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999998765 56899999999999999999999999999988 77775 579999999999999999999999999
Q ss_pred HhcC-C-CCCchHHHHHHH---H--------HhccChHHHHHHHHHHHhcCCccCCC
Q 039362 392 VELQ-P-DHDGRYVGLSNV---Y--------AIFKRWDEARTTREAMETRGVKKYPG 435 (440)
Q Consensus 392 ~~~~-~-~~~~~~~~l~~~---~--------~~~g~~~~A~~~~~~~~~~~~~~~~~ 435 (440)
.+.+ . .+...|..+... + ....-++...++.++|.+.|..++..
T Consensus 555 ~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 555 KRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9987 2 222222211100 0 00112455667788888888766543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.1e-32 Score=270.29 Aligned_cols=416 Identities=13% Similarity=0.057 Sum_probs=248.4
Q ss_pred cccccccCChhhHHHHhhhcC---CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHH
Q 039362 4 FSALSYLGNIDYSCKVLSHLS---NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE 80 (440)
Q Consensus 4 ~y~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (440)
.|... |++++|.++++.+. +++..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++
T Consensus 440 ~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 440 SYLRS--GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHhc--CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 34455 88888888877664 4556677777888888888888888888777642 234455666777777777777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCC---CchhhHHHHHHHHHhcCChHHHHHHHhhCCC
Q 039362 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT---KMSVSWNSMLDGYAKCGEMNMARQVFELMPE 157 (440)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 157 (440)
+|.+.++.+.+.++ .+..++..+...+.+.|+.++|...++++.. .+...+..++..+...|++++|..+++.+.+
T Consensus 517 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 517 DAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777776643 3566677777777777777777777766543 2334555666666667777777766666543
Q ss_pred ---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHH
Q 039362 158 ---RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT 234 (440)
Q Consensus 158 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (440)
.+...|..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+.
T Consensus 596 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 345566666666666666666666666665543 3344555566666666666666666666666554 44455555
Q ss_pred HHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCC
Q 039362 235 SLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL 313 (440)
Q Consensus 235 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 313 (440)
.++..+...|++++|..+++.+.+..| +...+..+...+...|++++|...|+.+...+ |+..++..+..++.+.|+
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCC
Confidence 666666666666666666666554433 34445555555556666666666666555442 333444455555555555
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCC-ccHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 039362 314 VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLE-PTASMLGSLLTGCMNHGKLDLAEIVGKKL 391 (440)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 391 (440)
+++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++ ... ++..++..++..+...|+ ++|+..++++
T Consensus 752 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 752 TAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 555555555555532 223444555555555555555555555554 222 233444555555555555 4455555555
Q ss_pred HhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 392 VELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
.+..|.++..+..++.++...|++++|.++++++++.+
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.2e-31 Score=264.73 Aligned_cols=413 Identities=14% Similarity=0.103 Sum_probs=315.4
Q ss_pred ccccccCChhhHHHHhhhcC---CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHH
Q 039362 5 SALSYLGNIDYSCKVLSHLS---NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKREL 81 (440)
Q Consensus 5 y~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (440)
|... |++++|.+.|+++. +.+...+..+...+...|++++|...|+++.+.+ +.+..++..+...+.+.|+.++
T Consensus 475 ~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 475 YLGK--GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHhC--CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHH
Confidence 4444 88888888887653 4556677777788888888888888888887653 3456677777788888888888
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCC---CchhhHHHHHHHHHhcCChHHHHHHHhhCCC-
Q 039362 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT---KMSVSWNSMLDGYAKCGEMNMARQVFELMPE- 157 (440)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 157 (440)
|..+++++.+.++ .+...+..++..+...|++++|..+++.+.+ .+...|..+..++...|++++|...|+.+.+
T Consensus 552 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 630 (899)
T TIGR02917 552 AVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL 630 (899)
T ss_pred HHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888877653 3566677788888888888888888877653 3556778888888888888888888887654
Q ss_pred --CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHH
Q 039362 158 --RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235 (440)
Q Consensus 158 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (440)
.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+...+..
T Consensus 631 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 708 (899)
T TIGR02917 631 QPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFEL 708 (899)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHH
Confidence 345667777888888888888888888877653 4456777777888888888888888888887765 566677777
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChH
Q 039362 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315 (440)
Q Consensus 236 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 315 (440)
+...+...|++++|...|+.+....|+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|+++
T Consensus 709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 8888888888888888888887777766777777888888888888888888877654 556667777777888888888
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039362 316 EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393 (440)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 393 (440)
+|...|+++.+.. +++..++..++..+...|+ ++|+..++++ ...| +..++..+...+...|++++|.++++++++
T Consensus 788 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 788 KAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888887754 3456677778888888888 7788888876 4444 345666777778888888888888888888
Q ss_pred cCCCCCchHHHHHHHHHhccChHHHHHHHHHHH
Q 039362 394 LQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426 (440)
Q Consensus 394 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 426 (440)
.+|.++.++..++.++.+.|++++|.+++++|+
T Consensus 866 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 866 IAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888888888888888888888888888775
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=8.5e-24 Score=212.84 Aligned_cols=406 Identities=11% Similarity=0.029 Sum_probs=324.2
Q ss_pred cCChhhHHHHhhhcC---CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcc---hHH------------HHHH
Q 039362 10 LGNIDYSCKVLSHLS---NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL---TYP------------FLAK 71 (440)
Q Consensus 10 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~------------~l~~ 71 (440)
.|++++|+..|++.. +.+..++..+...+.+.|++++|+..|++..+.. |+.. .+. ....
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHH
Confidence 399999999999764 4577899999999999999999999999988753 4321 121 2244
Q ss_pred HhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCC---chhhHHHHHHHHHhcCChHHH
Q 039362 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK---MSVSWNSMLDGYAKCGEMNMA 148 (440)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 148 (440)
.+.+.|++++|...++++.+..+ .+...+..+..++...|++++|++.|+++.+. +...+..+...+. .++.++|
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHH
Confidence 56788999999999999999864 36777888999999999999999999988742 3445666666664 4678999
Q ss_pred HHHHhhCCCCc------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 039362 149 RQVFELMPERN------------VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRM 216 (440)
Q Consensus 149 ~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 216 (440)
...++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998876421 2235566778889999999999999998874 3356677788889999999999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc--h---------hhHHHHHHHHHhcCChHHHHHH
Q 039362 217 MLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD--V---------LIWNAMIGGLAMHGFVKESLEL 285 (440)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~---------~~~~~l~~~~~~~~~~~~a~~~ 285 (440)
.++++.+.. +.+...+..+...+...++.++|+..++.+.....+ . ..+..+...+...|+.++|..+
T Consensus 517 ~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 999998765 556666666677778899999999999987643221 1 1123456678889999999999
Q ss_pred HHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc
Q 039362 286 FTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPT 364 (440)
Q Consensus 286 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~ 364 (440)
++. .+++...+..+...+.+.|++++|+..|+++.+.. +.+...+..++..|...|++++|++.++.. ...|+
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 872 25566677888899999999999999999999864 236778889999999999999999999987 45554
Q ss_pred -HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 365 -ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG------RYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 365 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
..++..+..++...|++++|.+++++++...|+++. .+..++..+...|++++|...+++...
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466777888899999999999999999998765543 566678899999999999999999864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.2e-23 Score=211.78 Aligned_cols=317 Identities=13% Similarity=0.075 Sum_probs=193.8
Q ss_pred HHHHhcCCHHHHHHHhhCCCC---CchhhHHHHHHHHHhcCChHHHHHHHhhCCC--Cch---hhHH------------H
Q 039362 106 HMYGSCGDIVYAREVFDGMPT---KMSVSWNSMLDGYAKCGEMNMARQVFELMPE--RNV---VSWS------------A 165 (440)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~---~~~~------------~ 165 (440)
..+...|++++|+..|++... .+...+..+..++.+.|++++|+..|++..+ |+. ..|. .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 344555666666666555432 2344555555555666666666666555443 211 1111 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhH------------
Q 039362 166 LIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ------------ 233 (440)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 233 (440)
....+.+.|++++|...|+++.... +.+...+..+..++...|++++|++.|+++.+.. +.+...+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCH
Confidence 1233445555666666665555542 2233444445555555566666665555555443 2222221
Q ss_pred ------------------------------HHHHHHHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCChHHH
Q 039362 234 ------------------------------TSLIDMYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGFVKES 282 (440)
Q Consensus 234 ------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 282 (440)
..+...+...|++++|+..|++..+..|+ ...+..+...|.+.|++++|
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 12334445667777777777777766663 45566677777777777777
Q ss_pred HHHHHHHHHcCCCccHhhHHHH--------------------------------------------HHHHHcCCChHHHH
Q 039362 283 LELFTEMQIVGITPDEITFLGL--------------------------------------------LSACAHGGLVMEAW 318 (440)
Q Consensus 283 ~~~~~~m~~~~~~p~~~~~~~l--------------------------------------------~~~~~~~~~~~~a~ 318 (440)
...++++.+.. +.+...+..+ ...+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 77777776542 2222222222 22333445555555
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039362 319 YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQP 396 (440)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 396 (440)
.+++. .+.+...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|++++|+..++++.+..|
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 54441 1334556677888888889999999988887 4555 457778888888889999999999998888888
Q ss_pred CCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 397 DHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 397 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
.++..+..++.++...|++++|.+++++++....
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 8888888888888889999999999998877543
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=2.3e-23 Score=197.28 Aligned_cols=394 Identities=16% Similarity=0.052 Sum_probs=296.9
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 039362 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYG 109 (440)
Q Consensus 30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (440)
.+......+.+.|++++|+..|++.++ +.|+...|..+..++...|++++|++.++..++.++. +...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 455677889999999999999999887 4678888999999999999999999999999987643 6778888999999
Q ss_pred hcCCHHHHHHHhhCCCCC---chhhHHHHHHHHHhcCChHHHHHHHhhCCC-----------------------------
Q 039362 110 SCGDIVYAREVFDGMPTK---MSVSWNSMLDGYAKCGEMNMARQVFELMPE----------------------------- 157 (440)
Q Consensus 110 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------------------- 157 (440)
..|++++|...|..+... +......++...........+...++.-..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999998877544321 111111111111111111122222211110
Q ss_pred Cc---hhhHHHHHHH---HHhcCCHHHHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 039362 158 RN---VVSWSALIDG---YVKCGDYKEALVIFEEMRDVG-SKA-NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229 (440)
Q Consensus 158 ~~---~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 229 (440)
.+ ...+..+... ....+++++|.+.|++....+ ..| ....+..+...+...|++++|...+++..+.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 00 0011111111 122468999999999998764 233 34567777788889999999999999998875 555
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHH
Q 039362 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308 (440)
Q Consensus 230 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 308 (440)
...+..+..++...|++++|...|+++.+..| +...|..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 77888999999999999999999999987766 57788999999999999999999999998764 44566777888889
Q ss_pred HcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccH-h-------HHHHHHHHHHhcC
Q 039362 309 AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTA-S-------MLGSLLTGCMNHG 379 (440)
Q Consensus 309 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~g 379 (440)
.+.|++++|+..|++..+.. +.+...++.+...+...|++++|++.|++. .+.|+. . .++..+..+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999998753 235678889999999999999999999986 444432 1 1122222334479
Q ss_pred ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 380 KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
++++|..+++++++.+|.+...+..++.++.+.|++++|.+.|++..+..
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 99999999999999999998899999999999999999999999987653
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=2.9e-25 Score=191.93 Aligned_cols=369 Identities=16% Similarity=0.200 Sum_probs=169.8
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCC-CcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcH-HHHHHHHHH
Q 039362 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP-DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDL-FISNSLIHM 107 (440)
Q Consensus 30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 107 (440)
+|..+.+.+-..|+++.|+.+++.+.+. +| ....|..+..++...|+.+.|.+.|.+.++.+ |+. ...+.+...
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnL 193 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHH
Confidence 3444444444555555555555554442 22 23344444445555555555555554444432 221 122223333
Q ss_pred HHhcCCHHHHHHHhhCCCCC---chhhHHHHHHHHHhcCChHHHHHHHhhCCCCc---hhhHHHHHHHHHhcCCHHHHHH
Q 039362 108 YGSCGDIVYAREVFDGMPTK---MSVSWNSMLDGYAKCGEMNMARQVFELMPERN---VVSWSALIDGYVKCGDYKEALV 181 (440)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~ 181 (440)
+...|++.+|...+.+..+. -.+.|+.|...+...|+...|++.|++..+-| ...|-.|...|...+.+++|..
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 33344444444444433321 12344444445555555555555555444311 2344444555555555555555
Q ss_pred HHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcC
Q 039362 182 IFEEMRDVGSKA-NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260 (440)
Q Consensus 182 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 260 (440)
.|.+.... .| ....+..+...|..+|.++.|+..|++.++.. |.-+..|+.|..++-..|+..+|.+.|.+.....
T Consensus 274 ~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 274 CYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 55444433 22 22334444444445555555555555554443 3333445555555555555555555555544444
Q ss_pred Cc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcc-HhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCC-cchHH
Q 039362 261 SD-VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD-EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPK-SEHYA 337 (440)
Q Consensus 261 ~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 337 (440)
|+ ....+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|+..|++.++ +.|+ ...|+
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~ 426 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALS 426 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHH
Confidence 42 344445555555555555555555544432 222 22344444455555555555555555444 2332 23444
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC-CCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039362 338 CMVDALSRAGQVTEAYEFICQM-PLEPTA-SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409 (440)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (440)
.+...|...|+.+.|.+.+.+. .+.|.. ..++.|...+...|+..+|+.-|+.++++.|+.+.++-.++.++
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 4455555555555555555444 344432 34444555555555555555555555555555555444444443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=2e-24 Score=186.78 Aligned_cols=414 Identities=13% Similarity=0.081 Sum_probs=348.2
Q ss_pred ccCChhhHHHHhhhcC---CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHH
Q 039362 9 YLGNIDYSCKVLSHLS---NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAV 85 (440)
Q Consensus 9 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 85 (440)
+.|++++|++.-...- +.+....-.+-..+.+..++++...--....+. .+--..+|..+...+-..|++++|+.+
T Consensus 60 q~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~ 138 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALAL 138 (966)
T ss_pred hccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHH
Confidence 3499999998765443 222223333445566767777666544444443 233467899999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCch--hh-HHHHHHHHHhcCChHHHHHHHhhCCC--Cc-
Q 039362 86 HAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS--VS-WNSMLDGYAKCGEMNMARQVFELMPE--RN- 159 (440)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~-~~~l~~~~~~~~~~~~a~~~~~~~~~--~~- 159 (440)
++.+++..+. ....|..+..++...|+.+.|.+.|.+..+-++ .. .+.+...+...|++++|...|.+..+ |.
T Consensus 139 y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f 217 (966)
T KOG4626|consen 139 YRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF 217 (966)
T ss_pred HHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce
Confidence 9999998644 688999999999999999999999988876444 32 23345556678999999999988775 43
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 039362 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN-EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (440)
...|+.|...+-.+|+.-.|++.|++..+. .|+ ...|..+...|...+.++.|...|.+..... +....++..+..
T Consensus 218 AiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~ 294 (966)
T KOG4626|consen 218 AIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLAC 294 (966)
T ss_pred eeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEE
Confidence 467999999999999999999999999876 444 4688899999999999999999999988775 667788899999
Q ss_pred HHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHH
Q 039362 239 MYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317 (440)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 317 (440)
.|...|.++-|++.|++..+.+|+ ...|+.|..++-..|+..+|+..+.+..... +.-....+.|...+...|.++.|
T Consensus 295 iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred EEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHH
Confidence 999999999999999999998887 6789999999999999999999999988763 33456888999999999999999
Q ss_pred HHHHHHHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039362 318 WYFFKSLGKRGMVPK-SEHYACMVDALSRAGQVTEAYEFICQM-PLEPTA-SMLGSLLTGCMNHGKLDLAEIVGKKLVEL 394 (440)
Q Consensus 318 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 394 (440)
..+|....+- .|. ....+.|...|...|++++|+..+++. .++|+. ..++.+...|-..|+.+.|++.+.+++..
T Consensus 374 ~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 374 TRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999884 454 456788999999999999999999998 889976 78999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 395 QPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
+|.-..++..|+..|...|+..+|+.-+++.+....
T Consensus 452 nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 452 NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999987654
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.3e-23 Score=189.32 Aligned_cols=294 Identities=15% Similarity=0.124 Sum_probs=183.6
Q ss_pred HhcCChHHHHHHHhhCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCChHH
Q 039362 140 AKCGEMNMARQVFELMPE---RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN---EVTLVSVLCACAHLGALDQ 213 (440)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 213 (440)
...|++++|...|.++.+ .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 344444444444444433 1334555666666666666666666666655421111 1345555666666666666
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCch------hhHHHHHHHHHhcCChHHHHHHHH
Q 039362 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV------LIWNAMIGGLAMHGFVKESLELFT 287 (440)
Q Consensus 214 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~ 287 (440)
|..+|+++.+.. +.+..++..++.++...|++++|.+.++.+.+..|+. ..+..+...+...|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 666666666543 4455566666666666777777776666665543321 123455566667777777777777
Q ss_pred HHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccHh
Q 039362 288 EMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTAS 366 (440)
Q Consensus 288 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~ 366 (440)
++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++ ...|+..
T Consensus 205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 776543 23344566666777777777777777777776432222345666777777777777777777776 4566666
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHh---ccChHHHHHHHHHHHhcCCccCCCC
Q 039362 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI---FKRWDEARTTREAMETRGVKKYPGW 436 (440)
Q Consensus 367 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~ 436 (440)
.+..++..+.+.|++++|..+++++.+..|++. .+..++..+.. .|+.+++..+++++.++++.++|.+
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 667777777778888888888888777777665 44444444432 4577788888888887777777763
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.2e-22 Score=183.08 Aligned_cols=296 Identities=16% Similarity=0.129 Sum_probs=196.0
Q ss_pred HHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhc
Q 039362 35 IRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESD---LFISNSLIHMYGSC 111 (440)
Q Consensus 35 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 111 (440)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334566788888888888887753 23445677777778888888888888888776532221 24566777777778
Q ss_pred CCHHHHHHHhhCCCC---CchhhHHHHHHHHHhcCChHHHHHHHhhCCCC--c------hhhHHHHHHHHHhcCCHHHHH
Q 039362 112 GDIVYAREVFDGMPT---KMSVSWNSMLDGYAKCGEMNMARQVFELMPER--N------VVSWSALIDGYVKCGDYKEAL 180 (440)
Q Consensus 112 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~a~ 180 (440)
|++++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+.+. + ...+..+...+.+.|++++|.
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 888888888777754 34456677777777777777777777766541 1 113445566666777777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcC
Q 039362 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260 (440)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 260 (440)
..++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777776543 333445566666777777777777777777665422224456667777777777777777777776666
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHc---CCChHHHHHHHHHHhhcCCCCCcc
Q 039362 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH---GGLVMEAWYFFKSLGKRGMVPKSE 334 (440)
Q Consensus 261 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 334 (440)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 66656666677777777777777777776654 5666666666655543 346677777777777665555544
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=5.6e-21 Score=181.09 Aligned_cols=385 Identities=11% Similarity=-0.017 Sum_probs=288.4
Q ss_pred CChhhHHHHhhhcC--CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHH
Q 039362 11 GNIDYSCKVLSHLS--NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88 (440)
Q Consensus 11 g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 88 (440)
|++++|++.|++.. .|+...|..+..++.+.|++++|++.++...+.. +.+...|..+..++...|++++|+.-+..
T Consensus 141 ~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~ 219 (615)
T TIGR00990 141 KDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTA 219 (615)
T ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999865 5788889999999999999999999999998853 23456788899999999999999988877
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCC-----------------------------ch---hhHHHHH
Q 039362 89 IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK-----------------------------MS---VSWNSML 136 (440)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------------------------~~---~~~~~l~ 136 (440)
+...+...+... ..++..+........+...++.-... +. ..+..+.
T Consensus 220 ~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (615)
T TIGR00990 220 SCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLG 298 (615)
T ss_pred HHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHH
Confidence 665432222221 11111111111112222222221110 00 0111111
Q ss_pred HH---HHhcCChHHHHHHHhhCCC-----C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 039362 137 DG---YAKCGEMNMARQVFELMPE-----R-NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH 207 (440)
Q Consensus 137 ~~---~~~~~~~~~a~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (440)
.. ....+++++|.+.|+...+ | ....|+.+...+...|++++|+..+++..... +-....+..+...+..
T Consensus 299 ~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~ 377 (615)
T TIGR00990 299 LKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLE 377 (615)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHH
Confidence 11 1234678999999988764 2 34568888889999999999999999998763 3345678888888999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCChHHHHHHH
Q 039362 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGFVKESLELF 286 (440)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 286 (440)
.|++++|...++++.+.. +.+..++..+..++...|++++|+..|++..+..|+ ...+..+...+.+.|++++|+..|
T Consensus 378 ~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999998876 677889999999999999999999999999988774 667888889999999999999999
Q ss_pred HHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcch------HHHHHHHHHhcCCHHHHHHHHhcC-
Q 039362 287 TEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEH------YACMVDALSRAGQVTEAYEFICQM- 359 (440)
Q Consensus 287 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~- 359 (440)
++..+.. +.+...+..+...+...|++++|+..|++........+... ++.....+...|++++|.+++++.
T Consensus 457 ~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 457 RRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9988753 44567888899999999999999999999988632211111 122222344579999999999996
Q ss_pred CCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 039362 360 PLEPTA-SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400 (440)
Q Consensus 360 ~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (440)
.+.|+. ..+..++..+.+.|++++|+..|+++.++.+....
T Consensus 536 ~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 536 IIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 666655 56888999999999999999999999998766443
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=2.8e-21 Score=182.50 Aligned_cols=325 Identities=11% Similarity=-0.007 Sum_probs=152.7
Q ss_pred HHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCC---CchhhHHHHHHHHHhcCCh
Q 039362 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT---KMSVSWNSMLDGYAKCGEM 145 (440)
Q Consensus 69 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 145 (440)
++..+.+.|+++.|..+++......+. +......++.+....|+++.|...|+++.. .+...+..+...+...|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 333344444444444444444443322 222223333333344444444444444432 1223344444444444444
Q ss_pred HHHHHHHhhCCC--C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039362 146 NMARQVFELMPE--R-NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI 222 (440)
Q Consensus 146 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (440)
++|...++++.. | +...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.
T Consensus 127 ~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 127 ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 444444444432 1 2334445555555555555555555554433211 11122111 22445555555555555554
Q ss_pred HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCcc
Q 039362 223 DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKE----SLELFTEMQIVGITPD 297 (440)
Q Consensus 223 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~p~ 297 (440)
+....++......+..++...|++++|+..++++....| +...+..+...+...|++++ |...|++..+.. +.+
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~ 283 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDN 283 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCC
Confidence 443222223333334455555555555555555554444 23444555555555555553 555555555432 223
Q ss_pred HhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccHhH-HHHHHHHH
Q 039362 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTASM-LGSLLTGC 375 (440)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~-~~~l~~~~ 375 (440)
...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++ ...|+... +..+..++
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al 362 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAAL 362 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3455555555555566666666666555532 112333444555555666666666666555 33444322 22234455
Q ss_pred HhcCChhHHHHHHHHHHhcCCCC
Q 039362 376 MNHGKLDLAEIVGKKLVELQPDH 398 (440)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~~~~~~ 398 (440)
...|++++|...|+++.+..|.+
T Consensus 363 ~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 363 LQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhChhh
Confidence 55666666666666666665554
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=7.5e-20 Score=176.81 Aligned_cols=391 Identities=10% Similarity=-0.021 Sum_probs=262.0
Q ss_pred hHHHHHH-HHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhc-hhcHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 039362 28 IFYWNTV-IRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGR-LAKRELAVAVHAQIAKTGYESDLFISNSLI 105 (440)
Q Consensus 28 ~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (440)
..+.... ...|.+.|++++|+.++.++.+.+ +.+......|..+|.. .++ +.+..++.. .++.++.+...++
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala 254 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYA 254 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHH
Confidence 4433333 777778888888888888887764 2333445556666666 355 666666442 2335677778888
Q ss_pred HHHHhcCCHHHHHHHhhCCCC-----CchhhHHH------------------------------HHHHH-----------
Q 039362 106 HMYGSCGDIVYAREVFDGMPT-----KMSVSWNS------------------------------MLDGY----------- 139 (440)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~------------------------------l~~~~----------- 139 (440)
..|.+.|+.++|.++++++.. +...+|.- ++..+
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 888888888888888887752 11111111 12222
Q ss_pred ----------------------------------------------------HhcCChHHHHHHHhhCCC-C-----chh
Q 039362 140 ----------------------------------------------------AKCGEMNMARQVFELMPE-R-----NVV 161 (440)
Q Consensus 140 ----------------------------------------------------~~~~~~~~a~~~~~~~~~-~-----~~~ 161 (440)
.+.|+.++|.++|+.... + +..
T Consensus 335 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 335 LLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred HhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 344444444444444432 0 111
Q ss_pred hHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHhc-CC-CC--CHHHHHHHHHHHHhcCChH
Q 039362 162 SWSALIDGYVKCGD---YKEALVI----------------------FEEMRDV-GS-KA--NEVTLVSVLCACAHLGALD 212 (440)
Q Consensus 162 ~~~~l~~~~~~~~~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~ 212 (440)
...-++..|.+.+. ..++..+ +...... +. ++ +...+..+..++.. ++++
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 22234444444433 2222221 1111000 11 22 34455555555554 6777
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039362 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292 (440)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 292 (440)
+|...+....... |+......+...+...|++++|...|+++....|+...+..+...+.+.|++++|...+++..+.
T Consensus 494 eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 494 VALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7888777766553 44444444455557889999999999988766666666777778888899999999999998876
Q ss_pred CCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc-HhHHHH
Q 039362 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPT-ASMLGS 370 (440)
Q Consensus 293 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~ 370 (440)
. +++...+..+.......|++++|...+++..+. .|+...+..+...+.+.|++++|...+++. ...|+ ...+..
T Consensus 572 ~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~n 648 (987)
T PRK09782 572 G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAA 648 (987)
T ss_pred C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4 333333334444555669999999999999885 467778888999999999999999999998 66665 467778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 371 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
+..++...|++++|+..++++++..|.++..+..++.++...|++++|...+++..+...
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888899999999999999999999999999999999999999999999999999987653
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.1e-20 Score=178.57 Aligned_cols=327 Identities=10% Similarity=-0.064 Sum_probs=269.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhCCCC---CchhhHHHHHHHHHhcCChHHHHHHHhhCCC--C-chhhHHHHHHHHHhc
Q 039362 100 ISNSLIHMYGSCGDIVYAREVFDGMPT---KMSVSWNSMLDGYAKCGEMNMARQVFELMPE--R-NVVSWSALIDGYVKC 173 (440)
Q Consensus 100 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~ 173 (440)
-...++..+.+.|++++|..+++.... .+...+..++.+....|++++|...|+++.. | +...+..+...+...
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 344566778899999999999988754 3455667777788889999999999999875 3 566788889999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 039362 174 GDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253 (440)
Q Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 253 (440)
|++++|...++++.... +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999998763 4456678888899999999999999999887765 3444444444 3478899999999999
Q ss_pred hhhhhcCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHH----HHHHHHHHhhc
Q 039362 254 HGVEKHQS--DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME----AWYFFKSLGKR 327 (440)
Q Consensus 254 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~ 327 (440)
+.+.+..| +...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...++++.+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 99876543 33444556778889999999999999998764 4456678888999999999986 89999999885
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHH
Q 039362 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPT-ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGL 405 (440)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 405 (440)
. +.+...+..+...+...|++++|...+++. ...|+ ...+..+..++.+.|++++|+..++++.+.+|.+...+..+
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 4 225667889999999999999999999998 55665 45677788999999999999999999999999887667777
Q ss_pred HHHHHhccChHHHHHHHHHHHhcCCc
Q 039362 406 SNVYAIFKRWDEARTTREAMETRGVK 431 (440)
Q Consensus 406 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 431 (440)
+.++...|++++|...|++..+....
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 88999999999999999999877543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=6.3e-20 Score=177.04 Aligned_cols=92 Identities=13% Similarity=0.054 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 039362 337 ACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414 (440)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (440)
..+...+...|++++|++.++++ ...| +...+..++..+...|++++|+..++++++..|++...+...+..+...|+
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Confidence 34444555555555555555554 2223 334445555555555555556666665555555555555555555555555
Q ss_pred hHHHHHHHHHHHhc
Q 039362 415 WDEARTTREAMETR 428 (440)
Q Consensus 415 ~~~A~~~~~~~~~~ 428 (440)
+++|..+++++++.
T Consensus 443 ~~~A~~~~~~ll~~ 456 (765)
T PRK10049 443 WRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHHh
Confidence 66655555555543
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=4.4e-20 Score=178.10 Aligned_cols=388 Identities=11% Similarity=0.009 Sum_probs=298.8
Q ss_pred CChhhHHHHhhhcC---CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHH
Q 039362 11 GNIDYSCKVLSHLS---NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87 (440)
Q Consensus 11 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 87 (440)
|+.++|++++++.. +.+...+..+...+...|++++|..+|++..+.. +.+...+..++..+...|++++|...++
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999865 3455579999999999999999999999998852 3345667788888999999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCC--C-chhhHHHHHHHHHhcCChHHHHHHHhhCCC-Cch---
Q 039362 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT--K-MSVSWNSMLDGYAKCGEMNMARQVFELMPE-RNV--- 160 (440)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~--- 160 (440)
++.+..+. +.. +..+..++...|+.++|...++++.+ | +...+..+...+...+..++|++.++.+.. |+.
T Consensus 108 ~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~ 185 (765)
T PRK10049 108 QLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRD 185 (765)
T ss_pred HHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHH
Confidence 99988543 566 88889999999999999999998875 3 445666778888889999999999998876 221
Q ss_pred ---hhHHHHHHHHHhc-----CCH---HHHHHHHHHHHhc-CCCCCHH-HHHHH----HHHHHhcCChHHHHHHHHHHHH
Q 039362 161 ---VSWSALIDGYVKC-----GDY---KEALVIFEEMRDV-GSKANEV-TLVSV----LCACAHLGALDQGRMMLRYMID 223 (440)
Q Consensus 161 ---~~~~~l~~~~~~~-----~~~---~~a~~~~~~~~~~-~~~~~~~-~~~~l----~~~~~~~~~~~~a~~~~~~~~~ 223 (440)
.....++...... +++ ++|++.++.+.+. ...|+.. .+... +..+...|++++|+..|+.+.+
T Consensus 186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~ 265 (765)
T PRK10049 186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA 265 (765)
T ss_pred HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 1222233333222 234 7788899988754 2234332 22221 3445677999999999999988
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCch-----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC----
Q 039362 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV-----LIWNAMIGGLAMHGFVKESLELFTEMQIVGI---- 294 (440)
Q Consensus 224 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---- 294 (440)
.+.+........+..+|...|++++|+..|+++....|.. .....+..++...|++++|..+++.+.....
T Consensus 266 ~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~ 345 (765)
T PRK10049 266 EGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLR 345 (765)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEe
Confidence 7632111223335789999999999999999987655532 3456667788999999999999999987531
Q ss_pred -------CccH---hhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc
Q 039362 295 -------TPDE---ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP 363 (440)
Q Consensus 295 -------~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p 363 (440)
.|+. ..+..+...+...|+.++|+..++++.... +.+...+..+...+...|++++|++.+++. ...|
T Consensus 346 ~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P 424 (765)
T PRK10049 346 LYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP 424 (765)
T ss_pred ecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 1232 244567778889999999999999998863 335677888999999999999999999998 6677
Q ss_pred c-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchH
Q 039362 364 T-ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRY 402 (440)
Q Consensus 364 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 402 (440)
+ ...+...+..+...|++++|+.+++++++..|+++.+.
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 6 46666777788899999999999999999999998543
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=3.9e-19 Score=171.90 Aligned_cols=197 Identities=14% Similarity=0.052 Sum_probs=157.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHH
Q 039362 229 TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308 (440)
Q Consensus 229 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 308 (440)
+...+..+..++.. ++.++|...+.+.....|+......+...+...|++++|...|+++... +|+...+..+..++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 45556666666665 6777888878777766776544444455556899999999999987654 45555566777788
Q ss_pred HcCCChHHHHHHHHHHhhcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHhcC-CCCccHhHHHHHHHHHHhcCChhHHHH
Q 039362 309 AHGGLVMEAWYFFKSLGKRGMVPKS-EHYACMVDALSRAGQVTEAYEFICQM-PLEPTASMLGSLLTGCMNHGKLDLAEI 386 (440)
Q Consensus 309 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~ 386 (440)
.+.|+.++|...++...+.. |+. ..+..+.......|++++|...+++. ...|+...+..+..++.+.|++++|+.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 89999999999999998864 332 23333344445669999999999998 778888889999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
.++++++.+|+++..+..++.++...|++++|++.+++.++..+
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999988654
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=3.9e-18 Score=161.79 Aligned_cols=415 Identities=10% Similarity=0.023 Sum_probs=300.7
Q ss_pred ccCChhhHHHHhhhcC--CCCh--HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCc-chHHHH--HHHhhchhcHHH
Q 039362 9 YLGNIDYSCKVLSHLS--NPRI--FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH-LTYPFL--AKASGRLAKREL 81 (440)
Q Consensus 9 ~~g~~~~A~~~~~~~~--~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l--~~~~~~~~~~~~ 81 (440)
+.|+++.|+..|++.. .|+. ..+ .++..+...|+.++|+..+++.. .|+. ..+..+ ...+...|++++
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3499999999999876 3442 234 78888888999999999999987 2432 333333 557788899999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHH--HhcCChHHHHHHHhhCCC--
Q 039362 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY--AKCGEMNMARQVFELMPE-- 157 (440)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~-- 157 (440)
|.++++++.+..+. ++..+..++..+...++.++|++.++++...++.....+..++ ...++..+|++.++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 99999999998755 5777788889999999999999999998865444322243444 345666569999998875
Q ss_pred C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH------HHHHHHHH-----HhcCCh---HHHHHHHHHHH
Q 039362 158 R-NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT------LVSVLCAC-----AHLGAL---DQGRMMLRYMI 222 (440)
Q Consensus 158 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~-----~~~~~~---~~a~~~~~~~~ 222 (440)
| +...+..++.++.+.|-...|.++..+-...- .+.... ....++.- ....++ +.|..-++.+.
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 4 56677888888999999988888776533221 111110 11111100 011222 34445555554
Q ss_pred HcC--CCCchhh----HHHHHHHHHhcCCHHHHHHHHhhhhhcCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-
Q 039362 223 DKG--LSLTLPL----QTSLIDMYAKCGAIKEALIVFHGVEKHQS--DVLIWNAMIGGLAMHGFVKESLELFTEMQIVG- 293 (440)
Q Consensus 223 ~~~--~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~- 293 (440)
..- .|+.... ..-.+-++...|+..++++.|+.+..... ...+-..+..+|...+++++|..+++.+....
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 421 1222222 23345677888999999999999985432 34566788899999999999999999986643
Q ss_pred ----CCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCC-----------CCCcc---hHHHHHHHHHhcCCHHHHHHH
Q 039362 294 ----ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM-----------VPKSE---HYACMVDALSRAGQVTEAYEF 355 (440)
Q Consensus 294 ----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~---~~~~l~~~~~~~~~~~~a~~~ 355 (440)
.+++......|.-++...+++++|..+++.+.+... .|+.. .+..++..+...|+..+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 122333357788899999999999999999987411 12221 234567788899999999999
Q ss_pred HhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 356 ICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 356 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
++++ ...| |......+...+...|.+.+|+..++.+..++|.+..+....+.++...|+|++|..+.+.+.+..+
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 9998 4445 6788888999999999999999999999999999999999999999999999999999988876543
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=1e-16 Score=152.19 Aligned_cols=389 Identities=12% Similarity=0.038 Sum_probs=284.9
Q ss_pred HHHHHccCChhhHHHHHHHHHHcCCCCCc--chHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 039362 35 IRGYSKSKNPNKSISLFVKMLRAGVSPDH--LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG 112 (440)
Q Consensus 35 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 112 (440)
+-...+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|+..+++..... .........+...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcC
Confidence 33578999999999999999885 4654 244 88888888899999999999998321 223444455567889999
Q ss_pred CHHHHHHHhhCCCCC---chhhHHHHHHHHHhcCChHHHHHHHhhCCC--CchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039362 113 DIVYAREVFDGMPTK---MSVSWNSMLDGYAKCGEMNMARQVFELMPE--RNVVSWSALIDGYVKCGDYKEALVIFEEMR 187 (440)
Q Consensus 113 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (440)
++++|.++|+++.+. ++..+..++..+...++.++|++.++++.. |+...+..++..+...++..+|++.++++.
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999998753 455677778889999999999999999987 444444334444444666767999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhH-HHHHHHHH---------hcCC---HHHHHHHHh
Q 039362 188 DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ-TSLIDMYA---------KCGA---IKEALIVFH 254 (440)
Q Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~---------~~g~---~~~A~~~~~ 254 (440)
+.+ +-+...+..+..++.+.|-...|.++..+-.+.--+.+..-. ...+.-.. ...+ .+.|+.-++
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 884 446777788888999999998888777653321111110000 00001111 1122 344555555
Q ss_pred hhhhc---CCch-h----hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhh
Q 039362 255 GVEKH---QSDV-L----IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326 (440)
Q Consensus 255 ~~~~~---~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 326 (440)
.+... .|.. . ..--.+.++...|++.++++.++.+...+.+....+-..+.++|...+.+++|+.+|+.+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 54432 2321 1 22234567888999999999999999888654556788899999999999999999999977
Q ss_pred cCC-----CCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCC-------------cc--H-hHHHHHHHHHHhcCChhHH
Q 039362 327 RGM-----VPKSEHYACMVDALSRAGQVTEAYEFICQM-PLE-------------PT--A-SMLGSLLTGCMNHGKLDLA 384 (440)
Q Consensus 327 ~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-------------p~--~-~~~~~l~~~~~~~g~~~~a 384 (440)
... .++......|.-+|...+++++|..+++++ ... |+ - .....++..+.-.|+..+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 521 122333567889999999999999999988 212 22 2 2234456678889999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
++.++++....|.|+.....++.++...|+..+|.+.++.....
T Consensus 436 e~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 436 QKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999877665
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=8.4e-18 Score=153.39 Aligned_cols=417 Identities=12% Similarity=0.079 Sum_probs=244.2
Q ss_pred ChhhHHHHhhhc---CCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCC--CCcchHHHHHHHhhchhcHHHHHHHH
Q 039362 12 NIDYSCKVLSHL---SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVS--PDHLTYPFLAKASGRLAKRELAVAVH 86 (440)
Q Consensus 12 ~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 86 (440)
.+..+..++... .+.|+.+.+.|.+.+.-.|++..++.+...+...... .-...|-.+.+++...|++++|...|
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 345556665543 2566777788888888888888888888777664211 12334777778888888888888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCC---chhhHHHHHHHHHhcC----ChHHHHHHHhhCCCC-
Q 039362 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK---MSVSWNSMLDGYAKCG----EMNMARQVFELMPER- 158 (440)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~- 158 (440)
.+..+.....-...+..+...+.+.|+++.+...|+.+.+. +..+...|...|...+ ..+.|..++.+..++
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 77776543322344556777788888888888888776542 3344455555555443 456666666665542
Q ss_pred --chhhHHHHHHHHHhcCCHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCc
Q 039362 159 --NVVSWSALIDGYVKCGDYKEALVIFEEM----RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK---GLSLT 229 (440)
Q Consensus 159 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 229 (440)
|...|-.+...+....-+.. +..|... ...+-.+.....+.+...+...|.+..|...|...... ...++
T Consensus 411 ~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 44455555555444433333 5554433 23344455566666666666666666666666665443 11111
Q ss_pred h------hhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc-----------------------------------hhhHHH
Q 039362 230 L------PLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD-----------------------------------VLIWNA 268 (440)
Q Consensus 230 ~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------------------------------~~~~~~ 268 (440)
. .+--.+..++-..++.+.|.+.|..+.+..|. +..++.
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence 1 12223444444455555555555555544443 333333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCccHhhHHHHHHHHHc------------CCChHHHHHHHHHHhhcCCCCCcch
Q 039362 269 MIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACAH------------GGLVMEAWYFFKSLGKRGMVPKSEH 335 (440)
Q Consensus 269 l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~ 335 (440)
+...+.....+..|.+-|....+.- ..+|..+...|...|.. .+..++|+++|.++++.. +-|...
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yA 648 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYA 648 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhh
Confidence 3334444444444444333332211 12344444444443331 234567777777777653 225566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcC--CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCCchHHHHHHHHHh
Q 039362 336 YACMVDALSRAGQVTEAYEFICQM--PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ--PDHDGRYVGLSNVYAI 411 (440)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 411 (440)
-|.+.-.++..|++.+|..+|.+. .......+|..+.++|...|++-.|++.|+...+.. .+++.+...|+.++.+
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 666777777788888888888777 222345677778888888888888888888777654 3344567778888888
Q ss_pred ccChHHHHHHHHHHHhcCC
Q 039362 412 FKRWDEARTTREAMETRGV 430 (440)
Q Consensus 412 ~g~~~~A~~~~~~~~~~~~ 430 (440)
.|++.+|.+.+.......+
T Consensus 729 ~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred hhhHHHHHHHHHHHHHhCC
Confidence 8888888777766665543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.2e-17 Score=150.67 Aligned_cols=420 Identities=13% Similarity=0.043 Sum_probs=272.9
Q ss_pred ccccccCChhhHHHHhhhcC---CCChHHHHHHHHHHHc---cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhc
Q 039362 5 SALSYLGNIDYSCKVLSHLS---NPRIFYWNTVIRGYSK---SKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK 78 (440)
Q Consensus 5 y~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (440)
|+-.+.|+.+.|+..|++.. |.++.++-.|...-.. ...+..+..++...-... .-++...+.|...+.-.|+
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKD 285 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhccc
Confidence 44334599999999999875 3344455444444333 344567777777765542 3577888999999999999
Q ss_pred HHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCC--c--hhhHHHHHHHHHhcCChHHHHHHH
Q 039362 79 RELAVAVHAQIAKTGYE--SDLFISNSLIHMYGSCGDIVYAREVFDGMPTK--M--SVSWNSMLDGYAKCGEMNMARQVF 152 (440)
Q Consensus 79 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~a~~~~ 152 (440)
++.+..+...+...... .-...|..+.++|-..|++++|...|.+.... + ...+--+...+.+.|+++.+...|
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHH
Confidence 99999999999876422 12345788999999999999999999877653 2 234556788999999999999999
Q ss_pred hhCCC--C-chhhHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----
Q 039362 153 ELMPE--R-NVVSWSALIDGYVKCG----DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYM---- 221 (440)
Q Consensus 153 ~~~~~--~-~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---- 221 (440)
+.+.+ | +..+...+...|...+ ..+.|..++.+....- +.|...|..+...+.. +++..+..+|..+
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L 443 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDIL 443 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHH
Confidence 99876 3 4567777777777664 5677888888776653 5567777777766654 4444446666554
Q ss_pred HHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc-----CCch------hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 039362 222 IDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH-----QSDV------LIWNAMIGGLAMHGFVKESLELFTEMQ 290 (440)
Q Consensus 222 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~ 290 (440)
...+.++.+...|.+...+...|++++|...|...... .++. .+--.+...+-..++++.|.+.|..+.
T Consensus 444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il 523 (1018)
T KOG2002|consen 444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL 523 (1018)
T ss_pred HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45566688899999999999999999999999987654 2222 122334445556677788888887777
Q ss_pred HcCCCccHh-hHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHh----cCCCCccH
Q 039362 291 IVGITPDEI-TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC----QMPLEPTA 365 (440)
Q Consensus 291 ~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~p~~ 365 (440)
.. .|+-. .|.-++......++..+|...++...... ..++..+..+...+.+...+.-|.+-|+ +....+|.
T Consensus 524 ke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~ 600 (1018)
T KOG2002|consen 524 KE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDA 600 (1018)
T ss_pred HH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCch
Confidence 65 34432 33333322223455666666666665542 2233444445555555555555555332 22223444
Q ss_pred hHHHHHHHHHHh------------cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 366 SMLGSLLTGCMN------------HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 366 ~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
.+...|...|.+ .+..++|+++|.++++.+|.|..+-+.++.+++..|++.+|+.+|.++.+...
T Consensus 601 YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 601 YSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred hHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 444444443321 23345566666666666666655556666666666666666666666655443
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=2.8e-17 Score=138.05 Aligned_cols=272 Identities=13% Similarity=0.117 Sum_probs=195.8
Q ss_pred HHhcCChHHHHHHHhhCCCCchhhH----HHHHHH-HHh-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 039362 139 YAKCGEMNMARQVFELMPERNVVSW----SALIDG-YVK-CGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD 212 (440)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~l~~~-~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 212 (440)
+.+.|+++.|+++++-..+.|..+- +.|-.. |.+ ..++..|.+.-+...... .-+......-.......|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 3566666666666666555433221 111111 111 224555555544443322 222222222223334568999
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039362 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH-QSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291 (440)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 291 (440)
+|.+.+++.+...-.-....| .+.-.+-..|++++|+++|-++... ..+..+.-.+...|-...+...|++++.+...
T Consensus 508 ka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 999999998866533333333 3445577889999999999888755 44667777888899999999999999988765
Q ss_pred cCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccHhHHHH
Q 039362 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTASMLGS 370 (440)
Q Consensus 292 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~ 370 (440)
. ++.|+..+..|...|-+.|+-.+|.+.+-.--+ -++-+..+...|...|....-+++++.+|++. -++|+..-|..
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 4 566788999999999999999999887665443 24457888888999999999999999999998 68999999998
Q ss_pred HHHHHH-hcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 039362 371 LLTGCM-NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414 (440)
Q Consensus 371 l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (440)
++..|. +.|++.+|..+|+...+..|.+...+..|+..+...|-
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 887765 68999999999999999999999999999998877773
No 28
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.9e-16 Score=133.01 Aligned_cols=388 Identities=16% Similarity=0.088 Sum_probs=267.0
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 039362 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD-HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMY 108 (440)
Q Consensus 30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (440)
.+-...+-|.++|++++|++.|.+.+. ..|| +..|.....+|...|+++++.+--...++.++. -+..+..-..++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAH 193 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHH
Confidence 455667789999999999999999998 4688 788999999999999999999888777775432 244666677788
Q ss_pred HhcCCHHHHHHH------hhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC---Cchh------------------
Q 039362 109 GSCGDIVYAREV------FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE---RNVV------------------ 161 (440)
Q Consensus 109 ~~~g~~~~a~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~------------------ 161 (440)
-..|++++|+.= ++....... ..++.-..+.--..++.+-+..-.. |+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~---~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASI---EPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchh---HHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 888988887542 222211111 1111111111111222222221000 1111
Q ss_pred -----hHHHHHHHHHh--c---CCHHHHHHHHHHHHhc-CCCC-----CHH------HHHHHHHHHHhcCChHHHHHHHH
Q 039362 162 -----SWSALIDGYVK--C---GDYKEALVIFEEMRDV-GSKA-----NEV------TLVSVLCACAHLGALDQGRMMLR 219 (440)
Q Consensus 162 -----~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~-~~~~-----~~~------~~~~l~~~~~~~~~~~~a~~~~~ 219 (440)
....+..++.. . ..+..|...+.+-... ...+ |.. +.......+.-.|+.-.+..-|+
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 11122211111 1 1344444443332111 0011 111 11111122344578889999999
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccH
Q 039362 220 YMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298 (440)
Q Consensus 220 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 298 (440)
...+.. +.+...|..+..+|....+.++-...|.......| ++.+|..-.+.+.-.+++++|..=|++.+... +-+.
T Consensus 351 ~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~ 428 (606)
T KOG0547|consen 351 AAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENA 428 (606)
T ss_pred HHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhh
Confidence 998876 44444588888999999999999999999998876 67888888888888999999999999988753 3345
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc-------Hh--HH
Q 039362 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPT-------AS--ML 368 (440)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-------~~--~~ 368 (440)
..|..+.-+..+.+.+++++..|++.++. ++..+.+|+.....+...++++.|.+.|+.. .+.|+ .. +-
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 56777777777889999999999999885 4557789999999999999999999999987 44554 11 11
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 369 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
..++. +.-.+++..|..+++++++++|....++.+|+..-.+.|+.++|+++|++...
T Consensus 508 Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 508 KALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12222 22358999999999999999999999999999999999999999999988654
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.2e-15 Score=127.36 Aligned_cols=353 Identities=13% Similarity=0.090 Sum_probs=197.5
Q ss_pred HhhhcCCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcH
Q 039362 19 VLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDL 98 (440)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 98 (440)
++-+..+.+..++..||.++++--..++|.+++++......+.+..+||.+|.+-.- ....+++.+|......||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCch
Confidence 444555566778888888888888888888888887777677788888888766432 2236777788887788888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHH
Q 039362 99 FISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKE 178 (440)
Q Consensus 99 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (440)
.|+|+++.+..+.|+++.|...
T Consensus 274 ~TfNalL~c~akfg~F~~ar~a---------------------------------------------------------- 295 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKA---------------------------------------------------------- 295 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHH----------------------------------------------------------
Confidence 8888888888877777665432
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHc----CC----CCchhhHHHHHHHHHhcCCHHHH
Q 039362 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ-GRMMLRYMIDK----GL----SLTLPLQTSLIDMYAKCGAIKEA 249 (440)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~~~~l~~~~~~~g~~~~A 249 (440)
|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++..+... .+ +.+...|...+..+.+..+.+-|
T Consensus 296 alqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA 375 (625)
T KOG4422|consen 296 ALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELA 375 (625)
T ss_pred HHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHH
Confidence 33444455555555555555555555554444432 22222222211 11 11222333344444444444444
Q ss_pred HHHHhhhhhc------CCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHH
Q 039362 250 LIVFHGVEKH------QSD---VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320 (440)
Q Consensus 250 ~~~~~~~~~~------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 320 (440)
..+-.-.... +|+ ..-|..+....++....+.....++.|...-.-|+..+...++++..-.|.++-..++
T Consensus 376 ~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRi 455 (625)
T KOG4422|consen 376 YQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRI 455 (625)
T ss_pred HHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHH
Confidence 4433332211 111 1223444444555555555555555555554555555555555555555555555555
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHhcC-CH--------H-----HHHHHH-------hcC-CCCccHhHHHHHHHHHHhc
Q 039362 321 FKSLGKRGMVPKSEHYACMVDALSRAG-QV--------T-----EAYEFI-------CQM-PLEPTASMLGSLLTGCMNH 378 (440)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~-----~a~~~~-------~~~-~~~p~~~~~~~l~~~~~~~ 378 (440)
|..++..|..........+...+++.. +. . -|..++ .++ ..+......+..+..+.+.
T Consensus 456 w~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~ 535 (625)
T KOG4422|consen 456 WKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRA 535 (625)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHc
Confidence 555554443333333222333333222 00 0 011111 111 2334455667777778899
Q ss_pred CChhHHHHHHHHHHhcC---CCCCc--hHHHHHHHHHhccChHHHHHHHHHHHhcCCccC
Q 039362 379 GKLDLAEIVGKKLVELQ---PDHDG--RYVGLSNVYAIFKRWDEARTTREAMETRGVKKY 433 (440)
Q Consensus 379 g~~~~a~~~~~~~~~~~---~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 433 (440)
|..++|-+++....+.+ |..|. +..-+.+.-.+.++...|..+++-|...+.++.
T Consensus 536 G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~ 595 (625)
T KOG4422|consen 536 GRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPIC 595 (625)
T ss_pred chHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhh
Confidence 99999999999886544 33332 334566666777888899999988887766543
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=2.2e-19 Score=153.37 Aligned_cols=259 Identities=16% Similarity=0.130 Sum_probs=114.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 039362 165 ALIDGYVKCGDYKEALVIFEEMRDVGSKANE-VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243 (440)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 243 (440)
.+...+.+.|++++|++++++......+|+. ..+..+...+...++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 4577888899999999999765544323444 344445556677899999999999998876 4466777778877 789
Q ss_pred CCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCccHhhHHHHHHHHHcCCChHHHHHHHH
Q 039362 244 GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACAHGGLVMEAWYFFK 322 (440)
Q Consensus 244 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 322 (440)
+++++|..++...-+..++...+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|+..++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998876666777888889999999999999999999987543 34566778888889999999999999999
Q ss_pred HHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHhcC--CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039362 323 SLGKRGMVP-KSEHYACMVDALSRAGQVTEAYEFICQM--PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 323 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (440)
+..+.. | |......++..+...|+.+++.++++.. ....++..+..+..++...|++++|...++++.+.+|.|+
T Consensus 171 ~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 999964 5 5677888999999999999988888877 2245667888999999999999999999999999999999
Q ss_pred chHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 400 GRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
.+...++.++...|+.++|.++.+++.+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887654
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=7.4e-15 Score=128.93 Aligned_cols=420 Identities=14% Similarity=0.069 Sum_probs=230.7
Q ss_pred CChhhHHHHhhhc---CCCChHHHHHHHHHHHccCChhhHHHHHHHH----HHcCCCCCcchHHHHHHHhhchhcHHHHH
Q 039362 11 GNIDYSCKVLSHL---SNPRIFYWNTVIRGYSKSKNPNKSISLFVKM----LRAGVSPDHLTYPFLAKASGRLAKRELAV 83 (440)
Q Consensus 11 g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 83 (440)
--++.|..++.+. .+.+...|.+-...--.+|+.+...+++.+. ...|+..+...|..=...|-..|..-.+.
T Consensus 420 etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence 4455555555433 2445555555555555566666655555542 23355555555555555555555555555
Q ss_pred HHHHHHHHcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHhhCCCC---CchhhHHHHHHHHHhcCChHHHHHHHhhCCC-
Q 039362 84 AVHAQIAKTGYESD--LFISNSLIHMYGSCGDIVYAREVFDGMPT---KMSVSWNSMLDGYAKCGEMNMARQVFELMPE- 157 (440)
Q Consensus 84 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 157 (440)
.+....+..|+... ..++..-...|.+.+.++-|..+|....+ .+...|......--..|..+....+|++...
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 55555555443311 23455555555566666666665554443 1223343333333344445555555544432
Q ss_pred -C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHH
Q 039362 158 -R-NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235 (440)
Q Consensus 158 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (440)
| ....|-..+..+...|+...|..++....+.. +.+...+...+..-.....++.|..+|.+.... .++..+|..
T Consensus 580 ~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mK 656 (913)
T KOG0495|consen 580 CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMK 656 (913)
T ss_pred CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHH
Confidence 1 22334444444555566666666655555443 224445555555555555556666555555432 345555555
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccH-hhHHHHHHHHHcCCC
Q 039362 236 LIDMYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE-ITFLGLLSACAHGGL 313 (440)
Q Consensus 236 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~ 313 (440)
-+....-.++.++|++++++..+..|+ .-.|..+.+.+-+.++.+.|.+.|..-.+. -|+. ..|..|...=.+.|.
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcc
Confidence 555555555555666555555555554 234444455555555555555555443322 2332 233333333344455
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-------C-------------------------C
Q 039362 314 VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-------P-------------------------L 361 (440)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~-------------------------~ 361 (440)
+-.|..++++..-.+ +-+...|...|+.-.+.|..+.|..++.++ + .
T Consensus 735 ~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc 813 (913)
T KOG0495|consen 735 LVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC 813 (913)
T ss_pred hhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc
Confidence 556666665555443 124455555555555666655555444332 0 2
Q ss_pred CccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCCccCCCCCC
Q 039362 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSF 438 (440)
Q Consensus 362 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 438 (440)
.-|+.+...+...+....++++|.+.|++++..+|++..+|..+...+.+.|.-++-.+++++..... |.-|..|
T Consensus 814 e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W 888 (913)
T KOG0495|consen 814 EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELW 888 (913)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHH
Confidence 23555666777778888899999999999999999999999999999999999999889988876643 3444444
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.3e-14 Score=121.31 Aligned_cols=410 Identities=12% Similarity=0.080 Sum_probs=308.2
Q ss_pred CChhhHHHHhhhcC---CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCc-chHHHHHHHhhchhcHHHHHHHH
Q 039362 11 GNIDYSCKVLSHLS---NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH-LTYPFLAKASGRLAKRELAVAVH 86 (440)
Q Consensus 11 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~ 86 (440)
+++..|+++|++.. ..++..|...+..-.++.+...|..++++.... -|-+ ..|-..+..--..|++..|.++|
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 67788999999865 567778999999999999999999999998874 3432 33444455556679999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCC--CCchhhHHHHHHHHHhcCChHHHHHHHhhCCC------C
Q 039362 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP--TKMSVSWNSMLDGYAKCGEMNMARQVFELMPE------R 158 (440)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~ 158 (440)
+...+ ..|+...+.+.|..-.+-..++.|..+++... .|+..+|.-...-=.+.|....|..+|+...+ .
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 99877 57899999999999999999999999999864 68888888888888899999999999988775 1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHH--------HHHHHHHcCCCC
Q 039362 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN--EVTLVSVLCACAHLGALDQGRM--------MLRYMIDKGLSL 228 (440)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~--------~~~~~~~~~~~~ 228 (440)
+...+.+.+.--.++..++.|.-+|+-.++. ++.+ ...|......=-+-|+...... -++.+++.+ +.
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~ 320 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CC
Confidence 3345666666566777888898888887765 2323 3344444433334454433322 245555555 67
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCch---hhHHHHH--------HHHHhcCChHHHHHHHHHHHHcCCCcc
Q 039362 229 TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV---LIWNAMI--------GGLAMHGFVKESLELFTEMQIVGITPD 297 (440)
Q Consensus 229 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~--------~~~~~~~~~~~a~~~~~~m~~~~~~p~ 297 (440)
|-.+|-..+..-...|+.+...++|+++....|.. ..|...| -.-....+.+.+.++++...+. ++-.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 77788888888888899999999999987654422 1222222 1123467889999999998873 4445
Q ss_pred HhhHHHHHHHH----HcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHH
Q 039362 298 EITFLGLLSAC----AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSL 371 (440)
Q Consensus 298 ~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l 371 (440)
..||..+--.| .++.++..|.+++..++. ..|...+|...|..-.+.+.++.+..++++. ...| +..+|...
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 56766554444 367888999999887764 5688889999999889999999999999998 6667 45788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCC--chHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 372 LTGCMNHGKLDLAEIVGKKLVELQPDHD--GRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 372 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
...-...|+.+.|..+|+-+++....+. ..|-+.+..-...|.++.|+.+++++++..
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 8888889999999999999987663322 257778888888999999999999998864
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=1.2e-15 Score=138.72 Aligned_cols=358 Identities=17% Similarity=0.135 Sum_probs=235.1
Q ss_pred HHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhC---CCCCchhhHHHHHHHHHhcCChHH
Q 039362 71 KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDG---MPTKMSVSWNSMLDGYAKCGEMNM 147 (440)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 147 (440)
..+...|+.++|.+++.++++..+. +...|..|...|-..|+.+++...+-. +...|...|..+.....+.|.+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3344458888999998888887644 677788888888888888888776533 334466677777777777788888
Q ss_pred HHHHHhhCCCC---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHhcCChHHHHHHHHH
Q 039362 148 ARQVFELMPER---NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT----LVSVLCACAHLGALDQGRMMLRY 220 (440)
Q Consensus 148 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~ 220 (440)
|.-.|.++.+. +...+-.-+..|.+.|+...|...|.++.....+.|..- ...+++.+...++-+.|.+.++.
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888777653 333334445667777888888888888776642222222 22334455556666777777766
Q ss_pred HHHcC-CCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcc
Q 039362 221 MIDKG-LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH--QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297 (440)
Q Consensus 221 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 297 (440)
....+ -..+...++.++..|.+...++.|.......... .+|..-|.+-= .++ ..-..++. ...++.++
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~-~~~~~~~~--~~~~~s~~ 377 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRR-EEPNALCE--VGKELSYD 377 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hcc-cccccccc--CCCCCCcc
Confidence 65521 1344556666777777777777776666655431 22222111000 000 00000000 01122333
Q ss_pred HhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCC--CcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc--cHhHHHHHH
Q 039362 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP--KSEHYACMVDALSRAGQVTEAYEFICQM-PLEP--TASMLGSLL 372 (440)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p--~~~~~~~l~ 372 (440)
...+ .+.-++.+.+..+....+...+.+..+.| +...|.-+..+|...|++.+|+.+|..+ ...+ +...|..++
T Consensus 378 l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 3331 22223445555555555666666655333 5667889999999999999999999998 2222 456899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCCccCCCCCC
Q 039362 373 TGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSF 438 (440)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 438 (440)
.+|...|.+++|++.|++++...|.+..+-.+|...+.+.|+.++|.+.++.+..-+....+++.|
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999999999999999887444334455554
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=2.1e-14 Score=130.65 Aligned_cols=414 Identities=14% Similarity=0.134 Sum_probs=268.3
Q ss_pred CChhhHHHHhhhcC---CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHH
Q 039362 11 GNIDYSCKVLSHLS---NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87 (440)
Q Consensus 11 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 87 (440)
|++++|.+++.++. +.+..+|.+|...|-+.|+.+++...+-.+-.. .+-|...|..+.....+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999999999875 567789999999999999999998876544332 34466889999999999999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCch----h----hHHHHHHHHHhcCChHHHHHHHhhCCC--
Q 039362 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMS----V----SWNSMLDGYAKCGEMNMARQVFELMPE-- 157 (440)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 157 (440)
++++..+. +...+---+..|-+.|+...|...|.++...++ . .-...+..+...++-+.|.+.++....
T Consensus 232 rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 99998644 666666677889999999999998888765322 1 223345667777777888888877654
Q ss_pred ---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------------------------CHHHHHHHHHHHHh
Q 039362 158 ---RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA---------------------------NEVTLVSVLCACAH 207 (440)
Q Consensus 158 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~l~~~~~~ 207 (440)
-+...++.++..+.+..+++.+......+......+ +... ..+.-++..
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhc
Confidence 245578888999999999999988887776521111 1111 112223344
Q ss_pred cCChHHHHHHHHHHHHcC--CCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC--chhhHHHHHHHHHhcCChHHHH
Q 039362 208 LGALDQGRMMLRYMIDKG--LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS--DVLIWNAMIGGLAMHGFVKESL 283 (440)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 283 (440)
.+..+....+.....+.+ ...+...|.-+..+|.+.|++.+|+.+|..+....+ +...|-.+..+|...|.++.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 444444444555555554 233455666677777777777777777777765533 3456667777777777777777
Q ss_pred HHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc--------CCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 039362 284 ELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR--------GMVPKSEHYACMVDALSRAGQVTEAYEF 355 (440)
Q Consensus 284 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (440)
+.++...... +.+...-..|...+.+.|+.++|.+.+..+..- +..|+..........+...|+.++-+..
T Consensus 470 e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 470 EFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7777766542 223334445555566677777777776664321 2223333333334444455554432222
Q ss_pred HhcC------------------------------------------------------------------CCCcc--HhH
Q 039362 356 ICQM------------------------------------------------------------------PLEPT--ASM 367 (440)
Q Consensus 356 ~~~~------------------------------------------------------------------~~~p~--~~~ 367 (440)
...| ++.-+ ...
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 1111 00001 123
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCCc----hHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQ--PDHDG----RYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 368 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
+..++.++.+.+++++|..+...+.+.. -.++. .-...+.+....+++.+|...+..|...
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4455667778888888888888887754 11111 2233445556778888888888887765
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=7.2e-14 Score=122.88 Aligned_cols=347 Identities=11% Similarity=0.069 Sum_probs=170.4
Q ss_pred CChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHH----HcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 039362 42 KNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA----KTGYESDLFISNSLIHMYGSCGDIVYA 117 (440)
Q Consensus 42 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a 117 (440)
.-++.|..+++...+. ++.+...|.+....--.+|+.+.+.+++++.. ..|+..+..-|-.=...|-..|..-.+
T Consensus 420 etYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~Tc 498 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITC 498 (913)
T ss_pred HHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhH
Confidence 3344444444444433 33344444444444444444444444433322 234444444444444444444444444
Q ss_pred HHHhhCCCC-----C-chhhHHHHHHHHHhcCChHHHHHHHhhCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039362 118 REVFDGMPT-----K-MSVSWNSMLDGYAKCGEMNMARQVFELMPE---RNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188 (440)
Q Consensus 118 ~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (440)
..+...+.. . -..+|..-...|.+.+.++-|+.+|....+ .+...|...+..--..|..+....+|++...
T Consensus 499 QAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~ 578 (913)
T KOG0495|consen 499 QAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE 578 (913)
T ss_pred HHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 333333221 1 122455555555555555555555555443 2333444444444445555555555655554
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHH
Q 039362 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA 268 (440)
Q Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 268 (440)
. ++-....+......+-..|+...|..++..+.+.+ +.+..++..-+........++.|..+|.+.....|+...|.-
T Consensus 579 ~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mK 656 (913)
T KOG0495|consen 579 Q-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMK 656 (913)
T ss_pred h-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHH
Confidence 4 12233333333444445566666666666655554 345555555555555666666666666665555555555555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcc-HhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC
Q 039362 269 MIGGLAMHGFVKESLELFTEMQIVGITPD-EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347 (440)
Q Consensus 269 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (440)
-+...--.++.++|.+++++..+. -|+ ...|..+.+.+.+.++.+.|...|..=.+. ++.....|..|.+.--+.|
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhc
Confidence 554444555566666666555543 333 234555555555555555555555443332 1223334555555555555
Q ss_pred CHHHHHHHHhcC--CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039362 348 QVTEAYEFICQM--PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVEL 394 (440)
Q Consensus 348 ~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 394 (440)
.+..|..++++. +...+...|...++.-.+.|..+.|..+..++++.
T Consensus 734 ~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666655 22234455555566555666666666555555543
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=1.1e-14 Score=130.12 Aligned_cols=277 Identities=13% Similarity=0.084 Sum_probs=166.3
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcch-HHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 039362 41 SKNPNKSISLFVKMLRAGVSPDHLT-YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119 (440)
Q Consensus 41 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 119 (440)
.|+++.|.+.+....+.+ +++.. |.....+..+.|+++.|.+.+.++.+..+.+...........+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 567777776666544431 22222 222233346667777777777776654322222222233556666777777777
Q ss_pred HhhCCCC---CchhhHHHHHHHHHhcCChHHHHHHHhhCCCC---ch--------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 039362 120 VFDGMPT---KMSVSWNSMLDGYAKCGEMNMARQVFELMPER---NV--------VSWSALIDGYVKCGDYKEALVIFEE 185 (440)
Q Consensus 120 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--------~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (440)
.++.+.+ .++.....+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 7666553 24445666666777777777777666666541 11 1233333333344455555555555
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc-hh
Q 039362 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD-VL 264 (440)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 264 (440)
+.+. .+.+......+...+...|+.++|..+++...+. +++.... ++.+....++.++++...+...+..|+ ..
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~ 329 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPL 329 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHH
Confidence 5333 2445566667777777777777777777777663 3444222 223333457777777777777766664 44
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhh
Q 039362 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326 (440)
Q Consensus 265 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 326 (440)
.+..+...+.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++...
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667777777778888888888777764 57777777777777778888888777776654
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.5e-13 Score=115.16 Aligned_cols=404 Identities=14% Similarity=0.128 Sum_probs=308.0
Q ss_pred hHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039362 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHM 107 (440)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (440)
...|-....--...+++..|.++|++.+.-. ..+...|..-+.+-.+...+..|..+++..+..-+..| ..+...+.+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHH
Confidence 3345555555556788899999999998754 45666788888888899999999999999988644434 344555556
Q ss_pred HHhcCCHHHHHHHhhCCC--CCchhhHHHHHHHHHhcCChHHHHHHHhhCC--CCchhhHHHHHHHHHhcCCHHHHHHHH
Q 039362 108 YGSCGDIVYAREVFDGMP--TKMSVSWNSMLDGYAKCGEMNMARQVFELMP--ERNVVSWSALIDGYVKCGDYKEALVIF 183 (440)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 183 (440)
--..|++..|.++|+.-. +|+...|.+.++.=.+-+.++.|..++++.. .|++.+|-..+..-.+.|+...+..+|
T Consensus 151 EE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 667899999999999876 5899999999999999999999999999865 499999999999899999999999999
Q ss_pred HHHHhc-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcCCHHHHHHH-------
Q 039362 184 EEMRDV-GS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT--LPLQTSLIDMYAKCGAIKEALIV------- 252 (440)
Q Consensus 184 ~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~------- 252 (440)
+...+. |- ..+...+.+...-=.+.+.++.|.-+|+..++.- |.+ ...|..+...--+-|+.....+.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 988664 10 1122334444444456778899999999988764 433 45566665555556664443332
Q ss_pred -HhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHh-------hHHHHHHHH---HcCCChHHHHHH
Q 039362 253 -FHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI-------TFLGLLSAC---AHGGLVMEAWYF 320 (440)
Q Consensus 253 -~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~~~---~~~~~~~~a~~~ 320 (440)
|+...+..| |-.+|-..+..-...|+.+...+++++.... ++|-.. .|..+=-+| ....+.+.+.++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 233333334 6778888888888889999999999999865 455321 122221122 256899999999
Q ss_pred HHHHhhcCCCCCcchHHH----HHHHHHhcCCHHHHHHHHhcC-CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039362 321 FKSLGKRGMVPKSEHYAC----MVDALSRAGQVTEAYEFICQM-PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ 395 (440)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 395 (440)
|+..++. ++....||.. ....-.++.++..|.+++... |.-|...++...+..-.+.++++....++++.++.+
T Consensus 389 yq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 389 YQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 9999883 3334455443 344456889999999999988 899999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCCccCCCC
Q 039362 396 PDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGW 436 (440)
Q Consensus 396 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 436 (440)
|.+..+|...+..-...|+++.|+.+|+-.+++..-..|..
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 99999999999999999999999999999998876555543
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.7e-13 Score=115.72 Aligned_cols=327 Identities=13% Similarity=0.066 Sum_probs=236.4
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchh-hHHHHHHHHHhc
Q 039362 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVV-SWSALIDGYVKC 173 (440)
Q Consensus 95 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~ 173 (440)
..|...+-.....+.+.|..+.|+..|......-+..|.+.+....-..+.+.+..+.......+.. .=-.+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 3455544444555666777777777777666544555555444443344444444443333322111 111234566666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---chhhHHHHHHHHHhcCCHH-HH
Q 039362 174 GDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL---TLPLQTSLIDMYAKCGAIK-EA 249 (440)
Q Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~-~A 249 (440)
.+.+++..-.+.....|++.+...-+....+.-...++++|+.+|+++.+.. |. |..+|..++-.-.....+. -|
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 7888888888888888876666666666666678889999999999998874 43 3455555443322211111 11
Q ss_pred HHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCC
Q 039362 250 LIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM 329 (440)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 329 (440)
..++ .+. +-.+.|...+..-|.-.++.++|+..|++..+.+ +.....|+.+.+-|....+...|++-++++++..
T Consensus 320 ~~v~-~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~- 394 (559)
T KOG1155|consen 320 QNVS-NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN- 394 (559)
T ss_pred HHHH-Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-
Confidence 1111 111 2345667777888888899999999999999875 3345678888889999999999999999999864
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 039362 330 VPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSN 407 (440)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 407 (440)
+.|-..|..|.++|.-.+...-|+-.|++. ..+| |...|..|+.+|.+.++.++|++.|.++...+..+...+..++.
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 347888999999999999999999999998 6677 67899999999999999999999999999999888889999999
Q ss_pred HHHhccChHHHHHHHHHHHh
Q 039362 408 VYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 408 ~~~~~g~~~~A~~~~~~~~~ 427 (440)
.|-+.++.++|...+++-++
T Consensus 475 Lye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999988876
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.4e-15 Score=133.95 Aligned_cols=279 Identities=15% Similarity=0.082 Sum_probs=226.0
Q ss_pred CChHHHHHHHhhCCC--C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCChHHHHHH
Q 039362 143 GEMNMARQVFELMPE--R-NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS--KANEVTLVSVLCACAHLGALDQGRMM 217 (440)
Q Consensus 143 ~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 217 (440)
-+..+|...|..+++ + +..+...+..+|...+++++|.++|+.+.+... .-+..+|.+.+..+-+ +-+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 356788888888654 2 335566778999999999999999999977521 1255678887766532 223333
Q ss_pred H-HHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039362 218 L-RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT 295 (440)
Q Consensus 218 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 295 (440)
+ +.+.+.. +..+.+|.++..+|.-.++.+.|++.|++..+..| ...+|+.+..-+.....+|.|...|+..... .
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--D 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--C
Confidence 3 3344444 77889999999999999999999999999998888 6889999999999999999999999988743 3
Q ss_pred cc-HhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHH
Q 039362 296 PD-EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP-KSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSL 371 (440)
Q Consensus 296 p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l 371 (440)
|. -..|..+...|.+.++++.|+-.|+++.+.+ | +.+....+...+.+.|+.++|+++++++ .+.| |+..-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 33 2466778888999999999999999999854 4 5667778888999999999999999998 5555 44455566
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 372 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
+..+...+++++|+..++++.+.-|++..++..++..|.+.|+.+.|+.-|.-+.+...
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 77778899999999999999999999999999999999999999999999888877544
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=2.8e-14 Score=127.57 Aligned_cols=285 Identities=12% Similarity=-0.002 Sum_probs=172.5
Q ss_pred hhcHHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHHhcCCHHHHHHHhhCCCCCchh--hHH--HHHHHHHhcCChHHHHH
Q 039362 76 LAKRELAVAVHAQIAKTGYESDLFIS-NSLIHMYGSCGDIVYAREVFDGMPTKMSV--SWN--SMLDGYAKCGEMNMARQ 150 (440)
Q Consensus 76 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~--~l~~~~~~~~~~~~a~~ 150 (440)
.|+++.|.+.+....+... ++..+ ........+.|+++.|...+.++.+.++. ... .....+...|++++|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 5999999988887655432 23333 33345558899999999999998753321 111 12344455555555555
Q ss_pred HHhhCCC--C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039362 151 VFELMPE--R-NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS 227 (440)
Q Consensus 151 ~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (440)
.++.+.+ | ++.....+...|.+.|+|++|.+++..+.+.+..++. ....+-
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------- 228 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------- 228 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-------------------------
Confidence 5555443 1 3344444555555555555555555555444322111 111000
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHH
Q 039362 228 LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306 (440)
Q Consensus 228 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 306 (440)
...+..++.......+.+...++++.+.+..| ++.....+...+...|+.++|.+++++..+. +|+.... ++.
T Consensus 229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~ 302 (398)
T PRK10747 229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLI 302 (398)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHH
Confidence 01122222223333445555566666554433 5666777777788888888888888777663 4444222 233
Q ss_pred HHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccHhHHHHHHHHHHhcCChhHHH
Q 039362 307 ACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTASMLGSLLTGCMNHGKLDLAE 385 (440)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~ 385 (440)
+....++.+++.+..+...+.. +-|...+..+.+.+.+.+++++|.+.|+.. ...|+...+..+...+.+.|+.++|.
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred hhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3345578888888888777753 224555677788888888888888888887 67788888778888888888888888
Q ss_pred HHHHHHHhcC
Q 039362 386 IVGKKLVELQ 395 (440)
Q Consensus 386 ~~~~~~~~~~ 395 (440)
.++++...+-
T Consensus 382 ~~~~~~l~~~ 391 (398)
T PRK10747 382 AMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhh
Confidence 8888876643
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=4.2e-17 Score=139.39 Aligned_cols=260 Identities=16% Similarity=0.153 Sum_probs=79.1
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHcC-CCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 039362 33 TVIRGYSKSKNPNKSISLFVKMLRAG-VSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSC 111 (440)
Q Consensus 33 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (440)
.+...+.+.|++++|+++++...... .+.|...|..+...+...++++.|.+.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33555666666666666664433332 1223344444555555666666666666666655433 44455555554 455
Q ss_pred CCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Q 039362 112 GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG- 190 (440)
Q Consensus 112 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 190 (440)
+++++|.++++..-+.+ ++...+...+..+...++++++.++++.+....
T Consensus 91 ~~~~~A~~~~~~~~~~~-----------------------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 141 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD-----------------------------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA 141 (280)
T ss_dssp --------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-
T ss_pred ccccccccccccccccc-----------------------------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence 66666665554432211 233444455555666666666666666654322
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcC-CchhhHHHH
Q 039362 191 SKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ-SDVLIWNAM 269 (440)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l 269 (440)
.+.+...|..+...+.+.|+.++|...+++.++.. |.+..+...++..+...|+.+++..++....+.. .|...+..+
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 220 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDAL 220 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 23344555555566666666666666666666654 4455566666666666666666666666555442 344555666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHh
Q 039362 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325 (440)
Q Consensus 270 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 325 (440)
..++...|+.++|...|++..... +.|+.....+..++...|+.++|..+.+++.
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 666666666677777666666543 4455566666666666677766666666554
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.4e-14 Score=118.27 Aligned_cols=297 Identities=11% Similarity=0.083 Sum_probs=130.1
Q ss_pred CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHH-----------------------------hhc
Q 039362 25 NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA-----------------------------SGR 75 (440)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----------------------------~~~ 75 (440)
..|...+-.....+.+.|....|++.|...... .+-.-..|..|... +..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 445555555555566777778888777776542 12222223322222 222
Q ss_pred hhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCc------hhhHHHHHHHHHhcCChHHHH
Q 039362 76 LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM------SVSWNSMLDGYAKCGEMNMAR 149 (440)
Q Consensus 76 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~ 149 (440)
....+++..-.+.....|++.+...-+....+.-...|+++|+.+|+++.+.| ..+|..++-.-.....+.---
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 23334444444444444444333333333334444455555555555554322 223333322211111111111
Q ss_pred HHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 039362 150 QVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229 (440)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 229 (440)
+..-.+.+-.+.|+..+.+-|.-.++.++|...|++..+.+ +.....++.+..-|...++...|.+-++..++.+ |.|
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~D 397 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRD 397 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chh
Confidence 11111112223334444444444444445555554444432 2223344444444444444444444444444444 444
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHH
Q 039362 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308 (440)
Q Consensus 230 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 308 (440)
-..|-.|.++|.-.+...=|+-+|++.....| |...|.+|..+|.+.++.++|++.|+.....| ..+...+..|...|
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLy 476 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLY 476 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHH
Confidence 44444444444444444444444444444433 34444444444444445555555444444433 22334444444444
Q ss_pred HcCCChHHHHHHHHHHh
Q 039362 309 AHGGLVMEAWYFFKSLG 325 (440)
Q Consensus 309 ~~~~~~~~a~~~~~~~~ 325 (440)
.+.++..+|...|.+-+
T Consensus 477 e~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 44444444444444433
No 43
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2.8e-13 Score=113.43 Aligned_cols=384 Identities=11% Similarity=0.077 Sum_probs=259.9
Q ss_pred hHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHh--hchhcHH-HHHHHHHHHHHcCCCCcHHHHHHH
Q 039362 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS--GRLAKRE-LAVAVHAQIAKTGYESDLFISNSL 104 (440)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l 104 (440)
+.+-|.|+. +..+|....+.-+|+.|.+.|++.++..-..|++.- ....++- .-.+.|-.|...|-. +..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 345555554 456788888888899998888777666554444332 2222222 222334444444322 22222
Q ss_pred HHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC----CchhhHHHHHHHHHhcCCHHHHH
Q 039362 105 IHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE----RNVVSWSALIDGYVKCGDYKEAL 180 (440)
Q Consensus 105 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~ 180 (440)
+.|++.+ ++-+.......++..+|.++|+--..+.|.+++++... -+..+||.+|.+-.-. .-.
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 4455444 44445555677999999999999999999999998764 4667888887654322 237
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH----HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH-HHHHHhh
Q 039362 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQG----RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE-ALIVFHG 255 (440)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~ 255 (440)
+++.+|....+.||..|++.++.+..+.|+++.| .+++.+|.+.|+.|...+|..++..+.+.++..+ +..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 7899999999999999999999999999988755 5788899999999999999999999999888754 4445554
Q ss_pred hhhc---------CC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCccH---hhHHHHHHHHHcCCChHHHH
Q 039362 256 VEKH---------QS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVG----ITPDE---ITFLGLLSACAHGGLVMEAW 318 (440)
Q Consensus 256 ~~~~---------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~---~~~~~l~~~~~~~~~~~~a~ 318 (440)
+... .| +...|...+..|.+..+.+-|.++-.-+.... +.|+. .-|..+....+.....+.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4322 23 45567778888888888888888766554321 33442 34667777788888899999
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC---CCCccHhHHHHHHHHHHhcC----------------
Q 039362 319 YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM---PLEPTASMLGSLLTGCMNHG---------------- 379 (440)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~p~~~~~~~l~~~~~~~g---------------- 379 (440)
..|+.|+-.-+-|+..+...++++..-.|+++-.-+++..+ +..-+......++..+++..
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~a 498 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFA 498 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 99999998867788888888999988888888877777766 21112222222222222221
Q ss_pred ----ChhHHH-HHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 380 ----KLDLAE-IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 380 ----~~~~a~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
++.++. ..-.++.+. .-.+......+..+.+.|+.++|.+++.-+.+.+
T Consensus 499 k~aad~~e~~e~~~~R~r~~-~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 499 KCAADIKEAYESQPIRQRAQ-DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHHHHHHhhHHHHHhc-cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 111111 111122222 2233467788888999999999999999887654
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=4.6e-14 Score=118.99 Aligned_cols=185 Identities=9% Similarity=0.084 Sum_probs=140.7
Q ss_pred hcCCHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHH
Q 039362 242 KCGAIKEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320 (440)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 320 (440)
..|++++|.+.|++....... ....-.+.-.+-..|+.++|++.|-++..- +..+...+..+...|.-..+..+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 468899999999988843221 222222334566789999999999887543 245667778888889889999999999
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 039362 321 FKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398 (440)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 398 (440)
+...... ++.|+.+...|...|-+.|+-..|.+..-+- ..-| +..+..-|..-|....=+++++.+|+++.-..|..
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 9887663 4457788899999999999999998876554 4444 56666666666777777899999999998888876
Q ss_pred CchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 399 DGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 399 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
...-..++.++.+.|++.+|.++++...++
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 655556677778899999999999988665
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=4e-14 Score=127.24 Aligned_cols=288 Identities=14% Similarity=0.017 Sum_probs=160.0
Q ss_pred hchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCC--Cch--hhHHHHHHHHHhcCChHHHH
Q 039362 74 GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT--KMS--VSWNSMLDGYAKCGEMNMAR 149 (440)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~ 149 (440)
...|+++.|.+.+....+..+.| ...+-....++.+.|+.+.|.+.+.+..+ |+. .........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 45688999999888877754332 23334456677788999999998888643 221 11122233444444444444
Q ss_pred HHHhhCCC--C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 039362 150 QVFELMPE--R-NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL 226 (440)
Q Consensus 150 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 226 (440)
+.++.+.+ | +...+..+...+...|++++|.+.+..+.+.++.++......-..++
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~--------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE--------------------- 232 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------------------
Confidence 44444432 1 23344444444555555555555555544443221111100000000
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhh---HH
Q 039362 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH-QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT---FL 302 (440)
Q Consensus 227 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~ 302 (440)
..++..-......+.....+...... ..+...+..+...+...|+.++|.+++++..+. .||... ..
T Consensus 233 -------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 233 -------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred -------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 00000000111122222222222211 125566666777777777777777777777665 233321 11
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhcCCCCC-c--chHHHHHHHHHhcCCHHHHHHHHhc--C-CCCccHhHHHHHHHHHH
Q 039362 303 GLLSACAHGGLVMEAWYFFKSLGKRGMVPK-S--EHYACMVDALSRAGQVTEAYEFICQ--M-PLEPTASMLGSLLTGCM 376 (440)
Q Consensus 303 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~--~~~~~l~~~~~~~~~~~~a~~~~~~--~-~~~p~~~~~~~l~~~~~ 376 (440)
.........++.+.+.+.++...+.. |+ . ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~--p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNV--DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 11122234466777788887777652 33 3 4556788888889999999998884 3 66788888888888888
Q ss_pred hcCChhHHHHHHHHHHhc
Q 039362 377 NHGKLDLAEIVGKKLVEL 394 (440)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~ 394 (440)
+.|+.++|.+++++....
T Consensus 382 ~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 382 QAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999887653
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=3.7e-13 Score=114.55 Aligned_cols=383 Identities=13% Similarity=0.012 Sum_probs=257.3
Q ss_pred ccccccCChhhHHHHhhhcC--CCC-hHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHhhchhcHH
Q 039362 5 SALSYLGNIDYSCKVLSHLS--NPR-IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD-HLTYPFLAKASGRLAKRE 80 (440)
Q Consensus 5 y~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 80 (440)
|.+. |.+++|++.+.+.. .|| +..|.....+|...|+|+++++--.+..+ +.|+ ...+..-..++-..|+++
T Consensus 125 ~f~~--kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 125 FFRN--KKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhc--ccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhccHH
Confidence 4455 99999999999865 566 88899999999999999999998888777 4465 334555566777778887
Q ss_pred HHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCC---Cchh-----------------------hHH
Q 039362 81 LAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT---KMSV-----------------------SWN 133 (440)
Q Consensus 81 ~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~-----------------------~~~ 133 (440)
+|+.=..-..-. |+. |..+--.+=+.+-+.| ..++.+-+.+-.. |+.. +..
T Consensus 201 eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQ-NASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 765322222111 111 2111111111111111 1222222221111 1111 111
Q ss_pred HHHHHH----Hh-cCChHHHHHHHhhCCC-----C-----c------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 039362 134 SMLDGY----AK-CGEMNMARQVFELMPE-----R-----N------VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSK 192 (440)
Q Consensus 134 ~l~~~~----~~-~~~~~~a~~~~~~~~~-----~-----~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 192 (440)
.+..++ .. ...+.+|...+.+-.. + | ..+.......+.-.|+.-.|...|+..+.....
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~ 358 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA 358 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc
Confidence 111111 00 0123333333322110 1 1 111222222344568889999999999887533
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHH
Q 039362 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIG 271 (440)
Q Consensus 193 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 271 (440)
++. .|..+...|....+.++....|+...+.+ +.++.+|..-.+.+.-.+++++|..-|++.....| +...|-.+..
T Consensus 359 ~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~ 436 (606)
T KOG0547|consen 359 FNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCC 436 (606)
T ss_pred cch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH
Confidence 333 37778888999999999999999999988 77888888888888889999999999999998877 5778888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCC-------CCcchHHHHHHHHH
Q 039362 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-------PKSEHYACMVDALS 344 (440)
Q Consensus 272 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~ 344 (440)
+..+.+.+++++..|++..+. ++..+..|+.....+...++++.|.+.|+..++.... +.+.+-..++..-.
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence 888999999999999999876 4555678999999999999999999999999875211 11112222322222
Q ss_pred hcCCHHHHHHHHhcC-CCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 039362 345 RAGQVTEAYEFICQM-PLEPTA-SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397 (440)
Q Consensus 345 ~~~~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 397 (440)
.+++..|..++++. .+.|.. ..+..|...-.+.|+.++|+++|++...+-..
T Consensus 516 -k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 516 -KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred -hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 38999999999998 778865 56888999999999999999999999876543
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.4e-13 Score=116.13 Aligned_cols=394 Identities=14% Similarity=0.041 Sum_probs=277.7
Q ss_pred hHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHH----HHcC---------C
Q 039362 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQI----AKTG---------Y 94 (440)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~---------~ 94 (440)
+..--.+.+++.-.|++++|..+...-.-. ..|..+......++.+..++++|..++... .... +
T Consensus 49 p~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l 126 (611)
T KOG1173|consen 49 PADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTL 126 (611)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhcee
Confidence 333334667777777888777777654322 245666666677777778888887777621 1100 0
Q ss_pred CCcHH-----------HHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHH---HHHH-----------------hc-
Q 039362 95 ESDLF-----------ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML---DGYA-----------------KC- 142 (440)
Q Consensus 95 ~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~-----------------~~- 142 (440)
.+|.. .+-.-...|....+.++|...|.+....|...+..+. .... -.
T Consensus 127 ~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ 206 (611)
T KOG1173|consen 127 ELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTK 206 (611)
T ss_pred ccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhh
Confidence 01100 0001112333444566676666665544444333221 1110 01
Q ss_pred CChHHHHHHHhhCC--------------------CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 039362 143 GEMNMARQVFELMP--------------------ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202 (440)
Q Consensus 143 ~~~~~a~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 202 (440)
.+.+.....|+... +.+........+-+...+++.+..++.+...+.. ++....+..-|
T Consensus 207 ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~i 285 (611)
T KOG1173|consen 207 EDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHI 285 (611)
T ss_pred hHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHH
Confidence 11122222232110 0233445555667778899999999999998875 66777777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCChHH
Q 039362 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGFVKE 281 (440)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 281 (440)
.++...|+..+-..+-..+++.- |..+.+|-++...|...|+..+|+++|.+.....|. ...|-....+|+-.|..++
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQ 364 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQ 364 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHH
Confidence 78889999888888888888775 778889999999999999999999999999876664 6789999999999999999
Q ss_pred HHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039362 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP-KSEHYACMVDALSRAGQVTEAYEFICQMP 360 (440)
Q Consensus 282 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 360 (440)
|+..+....+. ++-....+..+.--|.+.++.+.|.++|.++... .| |+...+.+.-.....+.+.+|..+|+..-
T Consensus 365 AmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 365 AMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 99999887654 1222223444555678899999999999998874 44 66777777777778899999999998761
Q ss_pred -----C---Cc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 361 -----L---EP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 361 -----~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
+ .+ -..+++.|++++.+.+.+++|+..+++++.+.|.+..++.+++-.|...|+++.|.+.|.+.+-.
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 1 11 34678999999999999999999999999999999999999999999999999999999887654
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=1.6e-13 Score=123.41 Aligned_cols=285 Identities=12% Similarity=0.014 Sum_probs=175.6
Q ss_pred HccCChhhHHHHHHHHHHcCCCCCcch-HHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 039362 39 SKSKNPNKSISLFVKMLRAGVSPDHLT-YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYA 117 (440)
Q Consensus 39 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 117 (440)
...|+++.|.+.+.+..+. .|++.. +.....+..+.|+++.|.+.+.+..+..+.+...+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4567777777777766553 344333 3333455666777777777777776654333333444456667777777777
Q ss_pred HHHhhCCCC---CchhhHHHHHHHHHhcCChHHHHHHHhhCCC---CchhhHHH----HHHHHHhcCCHHHHHHHHHHHH
Q 039362 118 REVFDGMPT---KMSVSWNSMLDGYAKCGEMNMARQVFELMPE---RNVVSWSA----LIDGYVKCGDYKEALVIFEEMR 187 (440)
Q Consensus 118 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~ 187 (440)
...++.+.+ .+......+...+...|++++|.+.+..+.+ .+...+.. ........+..++..+.+..+.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777776654 2445666777777777777777777777664 22222211 1111122233333334444444
Q ss_pred hcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhh--HHHHHHHHHhcCCHHHHHHHHhhhhhcCCc
Q 039362 188 DVGS---KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPL--QTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262 (440)
Q Consensus 188 ~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 262 (440)
.... +.+...+..+...+...|+.++|...+++..+.. +.+... ...........++.+.+...++...+..|+
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 3321 1366677777777888888888888888877764 222211 111122223346777788888777766664
Q ss_pred h---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhh
Q 039362 263 V---LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326 (440)
Q Consensus 263 ~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 326 (440)
. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 445677778888888888888888544433467777777888888888888888888887654
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=2.2e-14 Score=126.55 Aligned_cols=282 Identities=11% Similarity=0.069 Sum_probs=167.2
Q ss_pred ChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHhcCCHHHHHHH
Q 039362 43 NPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGY--ESDLFISNSLIHMYGSCGDIVYAREV 120 (440)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~ 120 (440)
+..+|+..|+....+ +.-+......+..+|...+++++|.++|+.+.+..+ ..+..+|.+.+.-+-+.-...---+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 456777777774443 333445556667777777788888888877776532 12455666665533322211111111
Q ss_pred hhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCC---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 039362 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPER---NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197 (440)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (440)
+-......+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+... +-+-..
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnA 491 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNA 491 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHH
Confidence 11222234567777777777777777777777776652 34556666666666667777777776665321 112233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhc
Q 039362 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMH 276 (440)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 276 (440)
|.-+...|.+.++++.|+-.|+++.+.+ |.+.+....+...+.+.|+.++|+.+++++...+| |+..--..+..+...
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 4445556667777777777777776665 55566666666666777777777777776665544 444444555566666
Q ss_pred CChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 039362 277 GFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328 (440)
Q Consensus 277 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 328 (440)
+++++|+..++++++. ++-+...|..+...|.+.|+.+.|..-|.-+.+..
T Consensus 571 ~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 571 GRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred cchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 6777777777776654 12233456666666666777777766666665543
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=2.7e-13 Score=109.34 Aligned_cols=230 Identities=14% Similarity=0.093 Sum_probs=102.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCch------hhHHHHHHHHHh
Q 039362 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV------LIWNAMIGGLAM 275 (440)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~ 275 (440)
..-|...|-+|.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.++.. ..|..+...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 334444444555555554444433 2223344444555555555555555544444332211 123334444444
Q ss_pred cCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 039362 276 HGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355 (440)
Q Consensus 276 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (440)
..+.+.|..++++..+.+ +.....=..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++...+
T Consensus 193 ~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 455555555555554432 1122222233444445555555555555555543322333444555555555555555555
Q ss_pred HhcC-CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH-H--hccChHHHHHHHHHHHhcCCc
Q 039362 356 ICQM-PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY-A--IFKRWDEARTTREAMETRGVK 431 (440)
Q Consensus 356 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~--~~g~~~~A~~~~~~~~~~~~~ 431 (440)
+.++ ...+.......+........-.+.|..++.+-+...|.-.. +..++..- . ..|++.+-+..+..|+...++
T Consensus 272 L~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g-f~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 272 LRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG-FHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred HHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH-HHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 5554 33333333333333333333344455554444444444322 22222222 1 124455555556666555444
Q ss_pred cCC
Q 039362 432 KYP 434 (440)
Q Consensus 432 ~~~ 434 (440)
..|
T Consensus 351 ~~~ 353 (389)
T COG2956 351 RKP 353 (389)
T ss_pred hcC
Confidence 444
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=5.9e-13 Score=107.46 Aligned_cols=281 Identities=14% Similarity=0.136 Sum_probs=143.1
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCCHHHH
Q 039362 41 SKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESD---LFISNSLIHMYGSCGDIVYA 117 (440)
Q Consensus 41 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a 117 (440)
+.++++|+++|-+|.+.. +-+..+..+|.+.|.+.|..+.|+++.+.+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 456677777777776631 22334455566667777777777777776665421111 12334455556666666666
Q ss_pred HHHhhCCCCCc---hhhHHHHHHHHHhcCChHHHHHHHhhCCCCch--------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039362 118 REVFDGMPTKM---SVSWNSMLDGYAKCGEMNMARQVFELMPERNV--------VSWSALIDGYVKCGDYKEALVIFEEM 186 (440)
Q Consensus 118 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (440)
+.+|..+.+.+ ......|+..|....+|++|+++-+++.+-+. ..|-.+...+....+++.|..++.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 66666665522 22444555566666666666655554433211 12333344444445555566665555
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhH
Q 039362 187 RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266 (440)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 266 (440)
.+.+ +.....-..+.......|+++.|.+.++.+.+.+...-+.+...|..+|...|+.++....+.++.+..+....-
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 5442 112222223334455556666666666666555544445555555566666666666666555555544444444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHc---CCChHHHHHHHHHHh
Q 039362 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH---GGLVMEAWYFFKSLG 325 (440)
Q Consensus 267 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 325 (440)
..+...-....-.+.|...+.+-... +|+...+..++..... .|...+....++.|.
T Consensus 286 l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 286 LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 44444333333444444444443332 4555555555554432 223334444444444
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=3.8e-12 Score=106.01 Aligned_cols=284 Identities=13% Similarity=0.096 Sum_probs=204.0
Q ss_pred ccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 039362 40 KSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119 (440)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 119 (440)
-.|+|.+|.++..+..+.+-.| ...|..-+.+.-+.|+.+.+-.++.++.+....++....-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3688888888888877665322 233555566777788888888888888876445666677777788888888888887
Q ss_pred HhhCCC---CCchhhHHHHHHHHHhcCChHHHHHHHhhCCCC-----------chhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039362 120 VFDGMP---TKMSVSWNSMLDGYAKCGEMNMARQVFELMPER-----------NVVSWSALIDGYVKCGDYKEALVIFEE 185 (440)
Q Consensus 120 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (440)
-.+++. ..++........+|.+.|++.....++..+.+. ...+|+.+++-....+..+.-...++.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 776554 356677888888888888888888888887752 123677777666666666666666666
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chh
Q 039362 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVL 264 (440)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 264 (440)
.... .+.++.....++.-+.+.|+.++|.++..+..+++..++. ...-...+-++...-++..+.-.+..| ++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 5443 3445666667777788888888888888888887766551 112233455666666666666554444 567
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCC
Q 039362 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331 (440)
Q Consensus 265 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 331 (440)
.+.++...|.+.+.|.+|.+.|+...+. .|+..+|+.+..++.+.|+..+|.+..++....-..|
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 7888888888888888888888876664 7888888888888888888888888888776543333
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=6.2e-12 Score=104.72 Aligned_cols=279 Identities=15% Similarity=0.059 Sum_probs=193.8
Q ss_pred cCCHHHHHHHhhCCCCC---chhhHHHHHHHHHhcCChHHHHHHHhhCCCC----chhhHHHHHHHHHhcCCHHHHHHHH
Q 039362 111 CGDIVYAREVFDGMPTK---MSVSWNSMLDGYAKCGEMNMARQVFELMPER----NVVSWSALIDGYVKCGDYKEALVIF 183 (440)
Q Consensus 111 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 183 (440)
.|++.+|++...+..+. ....|..-..+..+.|+.+.+-..+.++.++ +....-.........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 46677777666554432 2334444455566667777777777666542 3344555666777788888888888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh-------hHHHHHHHHHhcCCHHHHHHHHhhh
Q 039362 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP-------LQTSLIDMYAKCGAIKEALIVFHGV 256 (440)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~ 256 (440)
.++.+.+ +.+.........+|.+.|++.....++..+.+.+.-.+.. ++..++.-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8877765 4456677777788888888888888888888877554433 4455555555555555556677766
Q ss_pred hhc-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcch
Q 039362 257 EKH-QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEH 335 (440)
Q Consensus 257 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 335 (440)
+.. ..++..-..++.-+.+.|+.++|.++.++..+.+..|+ ... .-.+.+.++...-++..+.-.+.. +-++..
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L 330 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLL 330 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhC-CCChhH
Confidence 644 33566667778888888888899888888888776665 222 224566777777777777666642 224467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcC-CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039362 336 YACMVDALSRAGQVTEAYEFICQM-PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ 395 (440)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 395 (440)
+..|...|.+.+.+.+|.+.|+.. +..|+..+|+.+..++.+.|++.+|.+..++.....
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 778888888888888888888876 778888888888888888888888888888877543
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=9.9e-14 Score=112.04 Aligned_cols=229 Identities=12% Similarity=0.003 Sum_probs=200.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhh-HHHHHHHHHhc
Q 039362 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI-WNAMIGGLAMH 276 (440)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 276 (440)
-..+..+|.+.|-+.+|.+.++..++. .|.+.+|..|..+|.+..++..|+.+|.+..+..|-.++ ...+...+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 456888999999999999999998876 567778999999999999999999999999888785554 45677788888
Q ss_pred CChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 039362 277 GFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFI 356 (440)
Q Consensus 277 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 356 (440)
++.++|.++++...+.. +.+.....++...|...++++-|..+|+++...|+. +...|+.+.-+|...++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988764 556667777888888999999999999999999864 7889999999999999999999998
Q ss_pred hcC---CCCcc--HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 357 CQM---PLEPT--ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 357 ~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
++. --.|+ ..+|..+.......||+..|.+.|+-++..++++...++.|+..-.+.|+.++|+.+++......+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 887 22343 478999999999999999999999999999999999999999999999999999999998877544
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.58 E-value=1.5e-12 Score=108.69 Aligned_cols=198 Identities=11% Similarity=0.049 Sum_probs=151.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHH
Q 039362 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308 (440)
Q Consensus 230 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 308 (440)
...+..+...+...|++++|...+++..+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566677777777888888888777766555 35566777777788888888888888877654 34455666777777
Q ss_pred HcCCChHHHHHHHHHHhhcCCC-CCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHH
Q 039362 309 AHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAE 385 (440)
Q Consensus 309 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 385 (440)
...|++++|...++++...... .....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888764221 23345666778888899999999988887 4444 3567778888899999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
..++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999888877778888889999999999999988877653
No 56
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=7.2e-11 Score=103.22 Aligned_cols=403 Identities=11% Similarity=0.066 Sum_probs=207.1
Q ss_pred CChhhHHHHhhhcC---CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHH
Q 039362 11 GNIDYSCKVLSHLS---NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHA 87 (440)
Q Consensus 11 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 87 (440)
|++++|.+...++. +.+..++.+-+-++++.++|+.|+.+.+.-... ..+...+--=..++.+.+..++|+..++
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 67777776666554 344555666666677777777777544432210 1111111112233345666666666665
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHH-HhcCChHHHHHHHhhCCC---CchhhH
Q 039362 88 QIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY-AKCGEMNMARQVFELMPE---RNVVSW 163 (440)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~---~~~~~~ 163 (440)
-.. +.+..+...-...+.+.|++++|..+|+.+.+.+...+...+.+- ...+.-..+. +.+..+. .+...+
T Consensus 104 ~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~syel~ 178 (652)
T KOG2376|consen 104 GLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSYELL 178 (652)
T ss_pred ccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchHHHH
Confidence 211 112234444455566666677777666666443332222221110 0000000110 1222221 112222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCH------H-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 039362 164 SALIDGYVKCGDYKEALVIFEEMRDVG-------SKANE------V-TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229 (440)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~------~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 229 (440)
......+...|++.+|+++++...+.+ -.-+. . .-.-+.-++...|+..+|..++..+.+.+ ++|
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D 257 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PAD 257 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCC
Confidence 233445556667777777666652211 00000 0 11123334455667777777666666655 233
Q ss_pred hhh----HHHHHHHH---------------------------------------------HhcCCHHHHHHHHhhhhhcC
Q 039362 230 LPL----QTSLIDMY---------------------------------------------AKCGAIKEALIVFHGVEKHQ 260 (440)
Q Consensus 230 ~~~----~~~l~~~~---------------------------------------------~~~g~~~~A~~~~~~~~~~~ 260 (440)
... .|.|+.+- .-.+.-+.+.++........
T Consensus 258 ~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~ 337 (652)
T KOG2376|consen 258 EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMS 337 (652)
T ss_pred chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccC
Confidence 211 11111110 01122222222222222222
Q ss_pred CchhhHHHHHHHH-H-hcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHH--------HHhhcCCC
Q 039362 261 SDVLIWNAMIGGL-A-MHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK--------SLGKRGMV 330 (440)
Q Consensus 261 ~~~~~~~~l~~~~-~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~ 330 (440)
|. ..+.+++... . +...+..+.+++....+....-........+......|+++.|.+++. .+.+.+..
T Consensus 338 p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~ 416 (652)
T KOG2376|consen 338 PE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL 416 (652)
T ss_pred ch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC
Confidence 22 2233333322 2 223466777777776655311123455566667778999999999999 55554444
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHhcC--------CCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 039362 331 PKSEHYACMVDALSRAGQVTEAYEFICQM--------PLEPT-ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR 401 (440)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 401 (440)
|. +...+...+.+.++.+.|..++.+. .-.+. ..++..++..-.+.|+.++|..+++++.+.+|++..+
T Consensus 417 P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~ 494 (652)
T KOG2376|consen 417 PG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDL 494 (652)
T ss_pred hh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHH
Confidence 43 4555667777777766666666654 11121 2334444455557899999999999999999999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHHH
Q 039362 402 YVGLSNVYAIFKRWDEARTTREAM 425 (440)
Q Consensus 402 ~~~l~~~~~~~g~~~~A~~~~~~~ 425 (440)
...++.+|++. +.+.|..+-+.+
T Consensus 495 l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 495 LVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999999877 467777665444
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.56 E-value=3.3e-12 Score=119.35 Aligned_cols=263 Identities=12% Similarity=-0.004 Sum_probs=188.9
Q ss_pred chhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH---------hcCChHHHHHHHHHHHH
Q 039362 159 NVVSWSALIDGYVK-----CGDYKEALVIFEEMRDVGSKAN-EVTLVSVLCACA---------HLGALDQGRMMLRYMID 223 (440)
Q Consensus 159 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 223 (440)
+...|...+.+-.. .+.+++|...|++..+. .|+ ...+..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34455555544321 23467999999999876 443 445555554443 22457899999999998
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccH-hhH
Q 039362 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE-ITF 301 (440)
Q Consensus 224 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~ 301 (440)
.+ +.+...+..+..++...|++++|...|+++.+..|+ ...+..+...+...|++++|+..+++..+.. |+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhH
Confidence 87 778888889999999999999999999999988775 5678888889999999999999999998864 442 233
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccHh-HHHHHHHHHHhc
Q 039362 302 LGLLSACAHGGLVMEAWYFFKSLGKRGMVP-KSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTAS-MLGSLLTGCMNH 378 (440)
Q Consensus 302 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~-~~~~l~~~~~~~ 378 (440)
..++..+...|++++|...++++.+.. .| +...+..+..++...|++++|...++++ ...|+.. ..+.+...+...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 344445666899999999999987753 24 3445677888899999999999999987 4455543 345555566777
Q ss_pred CChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 379 GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 379 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
| ++|...++++.+.....+.........|.-.|+.+.+... +++.+.+-
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 7 4788878877765422222223366666677877777666 77776643
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.4e-11 Score=104.70 Aligned_cols=400 Identities=12% Similarity=0.034 Sum_probs=279.8
Q ss_pred cccccccCChhhHHHHhhh--cCCCChHHHHHHHHHHHccCChhhHHHHHHH----HHHc---------CCCCCcch---
Q 039362 4 FSALSYLGNIDYSCKVLSH--LSNPRIFYWNTVIRGYSKSKNPNKSISLFVK----MLRA---------GVSPDHLT--- 65 (440)
Q Consensus 4 ~y~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~---------~~~~~~~~--- 65 (440)
.|... |+++.|..+... +.+.|..........+.+..+++.|..++.. +... -+.+|...
T Consensus 58 ~l~~~--~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~ 135 (611)
T KOG1173|consen 58 VLYLG--RQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDL 135 (611)
T ss_pred HHHhh--hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccc
Confidence 34444 677777776653 4578888888888999999999999999882 2110 01112111
Q ss_pred -HHHHH-------HHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc------------------CCHHHHHH
Q 039362 66 -YPFLA-------KASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSC------------------GDIVYARE 119 (440)
Q Consensus 66 -~~~l~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------g~~~~a~~ 119 (440)
-+.-. ..|....+.++|...|.+....++. ....+-.++....-. .+.+....
T Consensus 136 ~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~ 214 (611)
T KOG1173|consen 136 MINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEI 214 (611)
T ss_pred cccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHH
Confidence 11111 2244455677788777777655433 222222222221110 11122222
Q ss_pred HhhCC----C----------------CCchhhHHHHHHHHHhcCChHHHHHHHhhCCCC---chhhHHHHHHHHHhcCCH
Q 039362 120 VFDGM----P----------------TKMSVSWNSMLDGYAKCGEMNMARQVFELMPER---NVVSWSALIDGYVKCGDY 176 (440)
Q Consensus 120 ~~~~~----~----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 176 (440)
+|+-. . ..++........-+...+++.+..++++.+.+. ....+..-|.++...|+.
T Consensus 215 lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~ 294 (611)
T KOG1173|consen 215 LYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKS 294 (611)
T ss_pred HHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhccc
Confidence 23211 0 012333444455677889999999999988763 344566667788899998
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh
Q 039362 177 KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV 256 (440)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 256 (440)
.+-..+=.++.+.- |....+|..+.--|...|+..+|.+.|.+....+ +.-...|..+...|.-.|..++|+..|..+
T Consensus 295 n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tA 372 (611)
T KOG1173|consen 295 NKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTA 372 (611)
T ss_pred chHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHH
Confidence 88888888888763 5567788888888888999999999999987765 455678899999999999999999999988
Q ss_pred hhcCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc--CCCC--
Q 039362 257 EKHQSD-VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR--GMVP-- 331 (440)
Q Consensus 257 ~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~-- 331 (440)
.+.-|. ...+--+.--|.+.++...|.+.|.+..... +.|+..++-+.-.....+.+.+|..+|+..+.. .+.+
T Consensus 373 arl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 373 ARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred HHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 766442 2233445557888999999999999987642 555667776666666779999999999988733 1111
Q ss_pred --CcchHHHHHHHHHhcCCHHHHHHHHhcC-C-CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 039362 332 --KSEHYACMVDALSRAGQVTEAYEFICQM-P-LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSN 407 (440)
Q Consensus 332 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 407 (440)
-..+++.|..+|.+.+++++|+..+++. . .+.+..++..++-.+...|+++.|++.|.+++.+.|++..+-..|..
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3345888999999999999999999998 3 34478899999999999999999999999999999999755555544
Q ss_pred HH
Q 039362 408 VY 409 (440)
Q Consensus 408 ~~ 409 (440)
+.
T Consensus 532 ai 533 (611)
T KOG1173|consen 532 AI 533 (611)
T ss_pred HH
Confidence 43
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=2.4e-12 Score=117.26 Aligned_cols=271 Identities=13% Similarity=0.107 Sum_probs=138.3
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCc
Q 039362 49 SLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM 128 (440)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 128 (440)
..+..+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34556677778888888888888888888888777 7777777766777777888887777777766654 566
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHh
Q 039362 129 SVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMR-DVGSKANEVTLVSVLCACAH 207 (440)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 207 (440)
..+|..|+.+|...||+..-. ..++ ....+...+...|--.....++..+. ..+.-||..+. +.....
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe-~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv~ 151 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFE-VVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLVL 151 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHH-HHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHHH
Confidence 677888888887777765411 1111 11112223333333333333332221 11122222221 111222
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh-cCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHH
Q 039362 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK-CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELF 286 (440)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 286 (440)
.|-++.+.+++..+...... .+... .+.-... ...+++-..+.+...+ .|++.+|.+.+..-...|+.+.|..++
T Consensus 152 eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 23333333333322111100 00000 1111111 1122333333333333 455666666666656666666666666
Q ss_pred HHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh
Q 039362 287 TEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSR 345 (440)
Q Consensus 287 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (440)
.+|.+.|++.+...|..|+-+ .++..-++.+++-|.+.|+.|+..|+...+-.+..
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 666666655555555544433 45555555555566555666666665544444443
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.54 E-value=1.9e-10 Score=103.80 Aligned_cols=371 Identities=15% Similarity=0.047 Sum_probs=250.0
Q ss_pred cCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCc--h--h-h
Q 039362 57 AGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM--S--V-S 131 (440)
Q Consensus 57 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~--~-~ 131 (440)
..+.-|...|..+.-++...|+++.+.+.|++.....+. ....|+.+...|...|.-..|..+++.-.... + . .
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 345567788888888888999999999999988765433 56778888888999999889998887765322 2 2 2
Q ss_pred HHHHHHHH-HhcCChHHHHHHHhhCCC--------CchhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCC
Q 039362 132 WNSMLDGY-AKCGEMNMARQVFELMPE--------RNVVSWSALIDGYVKC-----------GDYKEALVIFEEMRDVGS 191 (440)
Q Consensus 132 ~~~l~~~~-~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~ 191 (440)
+-..-..| .+.+..++++..-.++.+ -.+..|..+.-+|... ....++++.+++..+.+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d- 474 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD- 474 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-
Confidence 22222222 344566666655555432 1233444444444321 13456777888877665
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHH
Q 039362 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMI 270 (440)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~ 270 (440)
+.|......+.--|+-.++++.|.+..++..+.+-..+...|..|.-++.-.+++.+|+.+.+......|+ ......-+
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 33333334444556777889999999999888866788888888888888889999998888876644332 11111111
Q ss_pred HHHHhcCChHHHHHH-------------------------------------------HHHH--------HHcC------
Q 039362 271 GGLAMHGFVKESLEL-------------------------------------------FTEM--------QIVG------ 293 (440)
Q Consensus 271 ~~~~~~~~~~~a~~~-------------------------------------------~~~m--------~~~~------ 293 (440)
..-...++.++++.. ...+ ...|
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 111111222222111 1111 0001
Q ss_pred ---CCccH--------hhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CC
Q 039362 294 ---ITPDE--------ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PL 361 (440)
Q Consensus 294 ---~~p~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~ 361 (440)
+.|.. ..|......+.+.++.++|...+.++.+.. ......|......+...|..++|.+.|... .+
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 01111 123344556667788888887777776642 335666777778888999999999999887 67
Q ss_pred CccH-hHHHHHHHHHHhcCChhHHHH--HHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 362 EPTA-SMLGSLLTGCMNHGKLDLAEI--VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 362 ~p~~-~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
.|+. .+...+...+.+.|+..-|.. ++..+.+.+|.++.+|..++.++.+.|+.++|.+.|+...+...
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 7755 778899999999999888887 99999999999999999999999999999999999999887643
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.52 E-value=5.9e-11 Score=106.01 Aligned_cols=233 Identities=18% Similarity=0.165 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCchh-hHHHHHHHHHhcCCHHHHHHHHhhhhhc-----C--
Q 039362 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDK-----G-LSLTLP-LQTSLIDMYAKCGAIKEALIVFHGVEKH-----Q-- 260 (440)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-- 260 (440)
..+...+...|...|+++.|...++..++. | ..|... ..+.+...|...+++++|..+|+++... +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555667777777777777777766544 1 122222 2344677788888888888888877543 2
Q ss_pred -Cc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CccH-hhHHHHHHHHHcCCChHHHHHHHHHHhhc---C
Q 039362 261 -SD-VLIWNAMIGGLAMHGFVKESLELFTEMQIV-----GI-TPDE-ITFLGLLSACAHGGLVMEAWYFFKSLGKR---G 328 (440)
Q Consensus 261 -~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 328 (440)
|. ..+++.|..+|.+.|++++|..+++...+- |. .|.. .-++.+...|...+++++|..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 22 346777777888888888887777765321 21 2222 23556667778888899998888876654 1
Q ss_pred CCCC----cchHHHHHHHHHhcCCHHHHHHHHhcC---------CCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHh-
Q 039362 329 MVPK----SEHYACMVDALSRAGQVTEAYEFICQM---------PLEPT-ASMLGSLLTGCMNHGKLDLAEIVGKKLVE- 393 (440)
Q Consensus 329 ~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 393 (440)
+.++ ..+++.|...|...|++++|.++++++ +..+. ...++.+...|.+.+++.+|..+|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 346888999999999999999998876 12232 35678888889999999999888887765
Q ss_pred ---cCCCCCc---hHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 394 ---LQPDHDG---RYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 394 ---~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
.+|..+. +|..|+.+|.+.|++++|.++.+.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3455544 688899999999999999999888874
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.51 E-value=2.4e-10 Score=103.41 Aligned_cols=401 Identities=12% Similarity=0.067 Sum_probs=210.5
Q ss_pred CChhhHHHHhhhcCC--CC-hHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhh-c-----hhcHHH
Q 039362 11 GNIDYSCKVLSHLSN--PR-IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG-R-----LAKREL 81 (440)
Q Consensus 11 g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-----~~~~~~ 81 (440)
|++++|++.++.... .| ..........+.+.|+.++|..+|..+++.+ |+...|...+..+. . ..+.+.
T Consensus 18 g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~ 95 (517)
T PF12569_consen 18 GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEK 95 (517)
T ss_pred CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHH
Confidence 777777777766442 23 4455666677777777777777777777764 55554444433332 1 124566
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH-HHHHHhhCCCCCch-hhHHHHHHHHHhcCChHHHHHHHhhCCC--
Q 039362 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV-YAREVFDGMPTKMS-VSWNSMLDGYAKCGEMNMARQVFELMPE-- 157 (440)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 157 (440)
..++++.+...-+ .......+.-.+.....+. .+...+..+...++ ..|+.+-..|......+-..+++.....
T Consensus 96 ~~~~y~~l~~~yp--~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l 173 (517)
T PF12569_consen 96 LLELYDELAEKYP--RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSL 173 (517)
T ss_pred HHHHHHHHHHhCc--cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhh
Confidence 6677777665532 2222222222222212222 23333333333332 3455555555544444444444433210
Q ss_pred ----------------Cch--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 039362 158 ----------------RNV--VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN-EVTLVSVLCACAHLGALDQGRMML 218 (440)
Q Consensus 158 ----------------~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 218 (440)
|+. .++..+...|...|++++|++++++.++. .|+ ...|..-...+-..|++.+|...+
T Consensus 174 ~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~ 251 (517)
T PF12569_consen 174 ESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAM 251 (517)
T ss_pred cccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 112 13355566677777777777777777766 343 456666667777777777777777
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcC--C--chh----hH--HHHHHHHHhcCChHHHHHHHHH
Q 039362 219 RYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ--S--DVL----IW--NAMIGGLAMHGFVKESLELFTE 288 (440)
Q Consensus 219 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~--~~~----~~--~~l~~~~~~~~~~~~a~~~~~~ 288 (440)
+...+.+ ..|..+-+..+..+.++|++++|..++....+.. | |.. .| .....+|.+.|++..|+..|..
T Consensus 252 ~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 252 DEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHA 330 (517)
T ss_pred HHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777665 5566666666777777777777777776665332 1 111 11 3345567777777777777766
Q ss_pred HHHc--CCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCC-CcchHHHHHHHHHhcCCH----------------
Q 039362 289 MQIV--GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP-KSEHYACMVDALSRAGQV---------------- 349 (440)
Q Consensus 289 m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~---------------- 349 (440)
..+. .+.-|..-|.. -|.+.+-+..=.++++---...-.| =......+++.|....+-
T Consensus 331 v~k~f~~~~~DQfDFH~---Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~ 407 (517)
T PF12569_consen 331 VLKHFDDFEEDQFDFHS---YCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENM 407 (517)
T ss_pred HHHHHHHHhcccccHHH---HHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccC
Confidence 5542 11222222221 1444444433333332111110001 011112223333221110
Q ss_pred --HHHHHHHhcC----------------------------------CCCccHhHHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 039362 350 --TEAYEFICQM----------------------------------PLEPTASMLGSLLTGCMNHG-KLDLAEIVGKKLV 392 (440)
Q Consensus 350 --~~a~~~~~~~----------------------------------~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~ 392 (440)
.+..+.-++. ....|.. .+..-+.+.. =.++|.++++.+.
T Consensus 408 ~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~D---p~GekL~~t~dPLe~A~kfl~pL~ 484 (517)
T PF12569_consen 408 SAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDD---PLGEKLLKTEDPLEEAMKFLKPLL 484 (517)
T ss_pred ChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCC---ccHHHHhcCCcHHHHHHHHHHHHH
Confidence 0000000000 0011111 1122223333 3578899999999
Q ss_pred hcCCCCCchHHHHHHHHHhccChHHHHHHHHH
Q 039362 393 ELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424 (440)
Q Consensus 393 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 424 (440)
+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 485 ~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 485 ELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 99999999999999999999999888887654
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=3.3e-12 Score=103.43 Aligned_cols=233 Identities=11% Similarity=0.065 Sum_probs=200.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 039362 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243 (440)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 243 (440)
+.+..+|.+.|.+.+|.+.++...+. .|-..||..+-.+|.+..++..|..++.+-++.- |.+..........+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56889999999999999999998876 6777889999999999999999999999988764 66666667788899999
Q ss_pred CCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHH
Q 039362 244 GAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFK 322 (440)
Q Consensus 244 g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 322 (440)
++.++|.++|+.+.+..| ++.....+...|.-.++++-|+..++++.+.|+ .++..|..+.-+|...++++-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999999988766 677777788889999999999999999999994 567788888889999999999999999
Q ss_pred HHhhcCCCCC--cchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 039362 323 SLGKRGMVPK--SEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398 (440)
Q Consensus 323 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 398 (440)
+....--.|+ ..+|..+.......|++.-|.+.|+-. ...| +...++.|...-.+.|+++.|..++..+....|.-
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 9887633343 456888888888999999999999987 3344 45789999998999999999999999999988875
Q ss_pred Cc
Q 039362 399 DG 400 (440)
Q Consensus 399 ~~ 400 (440)
..
T Consensus 463 ~E 464 (478)
T KOG1129|consen 463 AE 464 (478)
T ss_pred cc
Confidence 43
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.49 E-value=1.6e-09 Score=96.04 Aligned_cols=393 Identities=13% Similarity=0.068 Sum_probs=253.5
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 039362 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYG 109 (440)
Q Consensus 30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (440)
+.....-.+...|+-++|.+..+...+.. ..+...|+.+.-.+....++++|++.|..+...+.. |...+.-+.-.-+
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~ 120 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQI 120 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH
Confidence 34334444667788888888888777643 345667888888888888999999999998887643 7778888877778
Q ss_pred hcCCHHHHHHHhhCCCC---CchhhHHHHHHHHHhcCChHHHHHHHhhCCC-----CchhhHHHH------HHHHHhcCC
Q 039362 110 SCGDIVYAREVFDGMPT---KMSVSWNSMLDGYAKCGEMNMARQVFELMPE-----RNVVSWSAL------IDGYVKCGD 175 (440)
Q Consensus 110 ~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l------~~~~~~~~~ 175 (440)
+.|+++..........+ .....|..+..++.-.|+...|..+++...+ ++...+... .....+.|.
T Consensus 121 QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~ 200 (700)
T KOG1156|consen 121 QMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS 200 (700)
T ss_pred HHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 88888877766655543 2445788888888888888888888776653 343333322 234556777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc-CCHHHHHHHH
Q 039362 176 YKEALVIFEEMRDVGSKANEVTL-VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC-GAIKEALIVF 253 (440)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~ 253 (440)
.++|++.+..-... ..|...+ .+-...+.+.+++++|..++..++..+ |.+...|..+..++.+. +..+....+|
T Consensus 201 ~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly 277 (700)
T KOG1156|consen 201 LQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALY 277 (700)
T ss_pred HHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 88887776654332 2233333 234455678889999999999888875 55555555566666533 3333333666
Q ss_pred hhhhhcCCchhhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhh----cC
Q 039362 254 HGVEKHQSDVLIWNAMIGGLAMHGFV-KESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK----RG 328 (440)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~ 328 (440)
....+..|....-..+--......++ +..-.++..+.+.|+++- +..+...|-.....+-..++...+.. .|
T Consensus 278 ~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~ 354 (700)
T KOG1156|consen 278 AILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTG 354 (700)
T ss_pred HHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhccccc
Confidence 66655433322222221222222233 334455666777776653 33333333222211111111111111 11
Q ss_pred ----------CCCCcch--HHHHHHHHHhcCCHHHHHHHHhcC-CCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039362 329 ----------MVPKSEH--YACMVDALSRAGQVTEAYEFICQM-PLEPTA-SMLGSLLTGCMNHGKLDLAEIVGKKLVEL 394 (440)
Q Consensus 329 ----------~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 394 (440)
-+|.... +..+++.+-+.|+++.|..+++.. +..|+. ..|..-.+.+...|++++|..+++++.++
T Consensus 355 ~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 355 MFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred CCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 1344333 346788899999999999999998 767765 55666678888999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 395 QPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
+-.|...-..-+.-..++++.++|.++....-+.|.
T Consensus 435 D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 435 DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 977654444677788899999999999888877664
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=8.9e-12 Score=116.51 Aligned_cols=229 Identities=12% Similarity=-0.045 Sum_probs=176.5
Q ss_pred CHHHHHHHHHHHH-----hcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh---------cCCHHHHHHHHhhhhhc
Q 039362 194 NEVTLVSVLCACA-----HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK---------CGAIKEALIVFHGVEKH 259 (440)
Q Consensus 194 ~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~ 259 (440)
+...|...+.+.. ..+++++|...+++..+.. |.+...+..+..+|.. .+++++|...++++.+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 3444545554432 1235679999999999876 5566677777666542 34589999999999988
Q ss_pred CC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCc-chHH
Q 039362 260 QS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS-EHYA 337 (440)
Q Consensus 260 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 337 (440)
.| +...+..+...+...|++++|+..|+++.+.+ +.+...+..+...+...|++++|+..++++.+.. |+. ..+.
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~ 410 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGI 410 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHH
Confidence 77 56778888888999999999999999999875 4456678888889999999999999999999864 432 2333
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC--CCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 039362 338 CMVDALSRAGQVTEAYEFICQM--PLEPT-ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414 (440)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (440)
.++..+...|++++|...+++. ...|+ +..+..+..++...|++++|...++++....|.+......+...|...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence 4455577789999999999887 22354 4456778888889999999999999988888887777888888888888
Q ss_pred hHHHHHHHHHHHhc
Q 039362 415 WDEARTTREAMETR 428 (440)
Q Consensus 415 ~~~A~~~~~~~~~~ 428 (440)
++|...++++.+.
T Consensus 490 -~~a~~~l~~ll~~ 502 (553)
T PRK12370 490 -ERALPTIREFLES 502 (553)
T ss_pred -HHHHHHHHHHHHH
Confidence 4888888887664
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=3.9e-11 Score=100.16 Aligned_cols=163 Identities=12% Similarity=0.094 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 039362 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240 (440)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 240 (440)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555554432 2233444444455555555555555555555443 33334444444455
Q ss_pred HhcCCHHHHHHHHhhhhhcC--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHH
Q 039362 241 AKCGAIKEALIVFHGVEKHQ--S-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317 (440)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 317 (440)
...|++++|...++++.... + ....+..+...+...|++++|...+.+..... +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555444321 1 12233333444444444444444444444331 11223333344444444444444
Q ss_pred HHHHHHHhh
Q 039362 318 WYFFKSLGK 326 (440)
Q Consensus 318 ~~~~~~~~~ 326 (440)
...+++..+
T Consensus 189 ~~~~~~~~~ 197 (234)
T TIGR02521 189 RAYLERYQQ 197 (234)
T ss_pred HHHHHHHHH
Confidence 444444433
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.6e-09 Score=88.93 Aligned_cols=273 Identities=10% Similarity=-0.021 Sum_probs=171.1
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039362 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSW---SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204 (440)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (440)
|......+..++...|+.++|+..|++...-|+.+. ....-.+.+.|++++...+...+.... .-+...+..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 455666677777777777777777777654333222 222333456677777777666665432 1222233333334
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHH
Q 039362 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESL 283 (440)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 283 (440)
....+++..|..+-++..+.+ +.+...+..-..++...|+.++|.-.|+......| +...|..++..|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 445667777777777766655 44555555555667777777777777777776654 6777778888888778777777
Q ss_pred HHHHHHHHcCCCccHhhHHHHH-HHHH-cCCChHHHHHHHHHHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHhcC-
Q 039362 284 ELFTEMQIVGITPDEITFLGLL-SACA-HGGLVMEAWYFFKSLGKRGMVPK-SEHYACMVDALSRAGQVTEAYEFICQM- 359 (440)
Q Consensus 284 ~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~- 359 (440)
-+-...... ++.+..++..+. ..|. ....-++|.+++++..+. .|+ ....+.+...+...|+.+.++.++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 666654433 234445555442 2222 223346677777766653 343 233455666677777788888887776
Q ss_pred CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHH
Q 039362 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGL 405 (440)
Q Consensus 360 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 405 (440)
...||....+.|...+...+.+.+|.+.|..+++.+|.+..+...+
T Consensus 466 ~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 466 IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 6677777777788877777788888888888888887776554433
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3e-10 Score=95.17 Aligned_cols=266 Identities=12% Similarity=0.047 Sum_probs=201.5
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHH---HHHHHHHhcCChHHHHHHHhhCCC---CchhhHHHHH
Q 039362 94 YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWN---SMLDGYAKCGEMNMARQVFELMPE---RNVVSWSALI 167 (440)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~ 167 (440)
++.|+.....+..++...|+.++|+..|++....|+.+.. ...-.+.+.|+.+....+...+.. .....|..-+
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 5667888999999999999999999999988765544332 223445677888888777776654 3445566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 039362 168 DGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247 (440)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 247 (440)
.......+++.|+.+-++.++.+ +.+...+..-...+...+++++|.-.|+...... |.+...|..|+.+|.-.|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 67778889999999999988764 4455566555667788999999999999887765 678899999999999999999
Q ss_pred HHHHHHhhhhhcCC-chhhHHHHH-HHH-HhcCChHHHHHHHHHHHHcCCCccH-hhHHHHHHHHHcCCChHHHHHHHHH
Q 039362 248 EALIVFHGVEKHQS-DVLIWNAMI-GGL-AMHGFVKESLELFTEMQIVGITPDE-ITFLGLLSACAHGGLVMEAWYFFKS 323 (440)
Q Consensus 248 ~A~~~~~~~~~~~~-~~~~~~~l~-~~~-~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 323 (440)
+|.-.-+...+.-| +..+...+. ..+ .....-++|..+++..... .|+- ...+.+...|...|..+.++.++++
T Consensus 386 EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99887776654433 444544442 222 2223347788888876654 5553 4567777888899999999999999
Q ss_pred HhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccH
Q 039362 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTA 365 (440)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~ 365 (440)
.... .||....+.|.+.+...+.+.+|++.|... .+.|+.
T Consensus 464 ~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 464 HLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 8873 589999999999999999999999999877 666644
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.45 E-value=4e-09 Score=93.51 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCcch--HHHHHHHHHhcCCHHHHHHHHhcC--CCCcc--HhHHHHHHHHHHhcCChhHHHH
Q 039362 313 LVMEAWYFFKSLGKRGMVPKSEH--YACMVDALSRAGQVTEAYEFICQM--PLEPT--ASMLGSLLTGCMNHGKLDLAEI 386 (440)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~ 386 (440)
.++.|..+|++.++ |.+|...- |......--+.|-...|+++++++ ++++. ...|+..+.-....=-+.....
T Consensus 565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~ 643 (835)
T KOG2047|consen 565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTRE 643 (835)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHH
Confidence 45566666666655 33332211 111122222445555566666655 23332 1344444443332222333445
Q ss_pred HHHHHHhcCCCCCc--hHHHHHHHHHhccChHHHHHHHHHH
Q 039362 387 VGKKLVELQPDHDG--RYVGLSNVYAIFKRWDEARTTREAM 425 (440)
Q Consensus 387 ~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~ 425 (440)
+|+++++.-|++.. .....++.-.+.|..+.|+.++.--
T Consensus 644 iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 644 IYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 55555554443322 2223334444455555555555433
No 70
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=1e-09 Score=88.12 Aligned_cols=389 Identities=13% Similarity=0.005 Sum_probs=251.6
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHH
Q 039362 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFIS-NSLIHMYG 109 (440)
Q Consensus 31 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 109 (440)
+++.+..+.+..+++.|++++..-.+.. +.+....+.|..+|....++..|-..++++...-+ ...-| -.-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P--~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP--ELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHHHHHHHHH
Confidence 4566667788899999999998877753 23667788889999999999999999999987643 33333 22345667
Q ss_pred hcCCHHHHHHHhhCCCCCc-hhhHHHHH--HHHHhcCChHHHHHHHhhCCC-CchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039362 110 SCGDIVYAREVFDGMPTKM-SVSWNSML--DGYAKCGEMNMARQVFELMPE-RNVVSWSALIDGYVKCGDYKEALVIFEE 185 (440)
Q Consensus 110 ~~g~~~~a~~~~~~~~~~~-~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (440)
+.+.+..|.++...|.+.+ ...-..-+ ......+++..+..++++.+. .+..+.+.......+.|+++.|.+-|+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 7899999999999888742 22211122 234567899999999999984 6777777777788899999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch----------------------------hhHHHHH
Q 039362 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTL----------------------------PLQTSLI 237 (440)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------~~~~~l~ 237 (440)
..+-+---+...|+..+ +..+.|+.+.|.+...++.++|+...+ ..++.-.
T Consensus 170 AlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 87765444556777655 445778999999999999988754321 1222233
Q ss_pred HHHHhcCCHHHHHHHHhhhhhc---CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCCh
Q 039362 238 DMYAKCGAIKEALIVFHGVEKH---QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314 (440)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 314 (440)
..+.+.|+++.|.+.+..|+.. ..|++|...+.-.- ..+++.+..+-+.-+.+.+ +-...||..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHH
Confidence 3456789999999999988743 34677766554332 2345555555566565554 33456888888899999888
Q ss_pred HHHHHHHHHHhhcCCC-CCcchHHHHHHHHHh-cCCHHHHHHHHhcCCCCc--cHhHHHHHHHHHHhcCC---hhHHHHH
Q 039362 315 MEAWYFFKSLGKRGMV-PKSEHYACMVDALSR-AGQVTEAYEFICQMPLEP--TASMLGSLLTGCMNHGK---LDLAEIV 387 (440)
Q Consensus 315 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~p--~~~~~~~l~~~~~~~g~---~~~a~~~ 387 (440)
+.|-.++.+-....++ .+...|+ |+.++.- .-..++|.+-++.+.-.- .......-+..-...++ ...+++-
T Consensus 327 ~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~ 405 (459)
T KOG4340|consen 327 DLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNE 405 (459)
T ss_pred hHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 8888777653322111 1222333 3444443 345566666555441000 00000001111111111 1223334
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
+++.++..- .+..+.++.|++..++..+.++|..-++-.
T Consensus 406 Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 406 YDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred HHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 444444331 145677788899999999999998776643
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.44 E-value=1.9e-11 Score=104.64 Aligned_cols=224 Identities=11% Similarity=-0.087 Sum_probs=163.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 039362 170 YVKCGDYKEALVIFEEMRDVG-SKAN--EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246 (440)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 246 (440)
....++.+.++.-+.+++... ..|+ ...+..+...+...|+.++|...|++..+.. +.+...+..+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 344567788888888887643 1222 3457777778899999999999999999886 67788999999999999999
Q ss_pred HHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHh
Q 039362 247 KEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325 (440)
Q Consensus 247 ~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 325 (440)
++|...|++..+..|+ ...|..+...+...|++++|.+.|+...+. .|+..........+...++.++|...|.+..
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999999988774 677888888999999999999999998876 4443322222223445678999999997765
Q ss_pred hcCCCCCcchHHHHHHHHHhcCCHHHH--HHHHhcC-C----CCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 039362 326 KRGMVPKSEHYACMVDALSRAGQVTEA--YEFICQM-P----LEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397 (440)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~-~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 397 (440)
... .|+... ..+ .....|+..++ .+.+.+. . +.| ....|..+...+.+.|++++|+..|+++.+.+|+
T Consensus 193 ~~~-~~~~~~-~~~--~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 193 EKL-DKEQWG-WNI--VEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred hhC-CccccH-HHH--HHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 432 233222 222 33345555433 3333322 2 122 2357889999999999999999999999999976
Q ss_pred CCc
Q 039362 398 HDG 400 (440)
Q Consensus 398 ~~~ 400 (440)
+..
T Consensus 269 ~~~ 271 (296)
T PRK11189 269 NFV 271 (296)
T ss_pred hHH
Confidence 543
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.44 E-value=1.7e-08 Score=89.59 Aligned_cols=390 Identities=14% Similarity=0.134 Sum_probs=236.8
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHc-CCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 039362 30 YWNTVIRGYSKSKNPNKSISLFVKMLRA-GVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMY 108 (440)
Q Consensus 30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (440)
.|-..+..+.++|+.......|+..+.. -+.-....|...+....+.+-++.+.+++++.++.. +..-.-.+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 4555566666667776666666665543 122234456666666666666667777776665542 22244555666
Q ss_pred HhcCCHHHHHHHhhCCCCC----------------------------------------------c--hhhHHHHHHHHH
Q 039362 109 GSCGDIVYAREVFDGMPTK----------------------------------------------M--SVSWNSMLDGYA 140 (440)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~~----------------------------------------------~--~~~~~~l~~~~~ 140 (440)
+..+++++|.+.+..+... | ...|++|...|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 6666666666666554311 1 124777888888
Q ss_pred hcCChHHHHHHHhhCCC--CchhhHHHHHHHHHhc----------------C------CHHHHHHHHHHHHhcCC-----
Q 039362 141 KCGEMNMARQVFELMPE--RNVVSWSALIDGYVKC----------------G------DYKEALVIFEEMRDVGS----- 191 (440)
Q Consensus 141 ~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~~~----- 191 (440)
+.|.+++|..+|++... -++..|..+-++|+.- + +++-.+..|+.+.....
T Consensus 260 r~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred HhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 88888888888877654 1222233333332211 1 12223333444333210
Q ss_pred ------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------chhhHHHHHHHHHhcCCHHHHHHHHhhhhhc
Q 039362 192 ------KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL------TLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259 (440)
Q Consensus 192 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 259 (440)
+.+...+..-+. ...|+..+-...+.++.+.- .| -...|..+...|-..|+++.|..+|++..+.
T Consensus 340 VlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 111222222221 23456666777777766542 22 1246788899999999999999999998865
Q ss_pred C-Cc----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----------c------cHhhHHHHHHHHHcCCChHHH
Q 039362 260 Q-SD----VLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT-----------P------DEITFLGLLSACAHGGLVMEA 317 (440)
Q Consensus 260 ~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----------p------~~~~~~~l~~~~~~~~~~~~a 317 (440)
. +. ..+|..-...-.++.+++.|+++++.....--+ + +...|...++.-...|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 2 22 245666667777888999999998886532111 1 122344555555566888888
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-C-C-CccH-hHHHHHHHHHHh---cCChhHHHHHHHH
Q 039362 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-P-L-EPTA-SMLGSLLTGCMN---HGKLDLAEIVGKK 390 (440)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~-~p~~-~~~~~l~~~~~~---~g~~~~a~~~~~~ 390 (440)
..+|+++.+..+. ++.........+-.+.-++++.+++++- . + -|++ .+|+..+.-+.+ ....+.|..+|++
T Consensus 497 k~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 497 KAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 8999999987654 3333333344456777899999999987 2 2 2344 677777665543 3468999999999
Q ss_pred HHhcCCCCCc--hHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 391 LVELQPDHDG--RYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 391 ~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
+++.-|+... .|...+..--+-|.-..|..++++...
T Consensus 576 aL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 576 ALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9997775432 344555555566888899999988643
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=7.6e-09 Score=85.30 Aligned_cols=376 Identities=12% Similarity=0.089 Sum_probs=195.0
Q ss_pred CChhhHHHHhhhcC----CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHH
Q 039362 11 GNIDYSCKVLSHLS----NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVH 86 (440)
Q Consensus 11 g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 86 (440)
.++..|+.+++--. +....+-..+...+.+.|++++|+..+..+... -.|+...+..|.-+..-.|.+.+|..+-
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 56777877776332 111122223556677889999999999887764 3566777777777777788888888765
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CchhhHH
Q 039362 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE--RNVVSWS 164 (440)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 164 (440)
... +.++-.-..++....+.|+-++-..+-+.+.+.. ..--+|.+.....-.+.+|++++.++.. |+....|
T Consensus 115 ~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 115 EKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred hhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence 443 2233344455566667777666665555554322 2334455555556678899999988875 3333444
Q ss_pred H-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhc--CChHHHH------------HHHHHHHHcCC--
Q 039362 165 A-LIDGYVKCGDYKEALVIFEEMRDVGSKANE-VTLVSVLCACAHL--GALDQGR------------MMLRYMIDKGL-- 226 (440)
Q Consensus 165 ~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--~~~~~a~------------~~~~~~~~~~~-- 226 (440)
. +.-+|.+..-++-+.+++....+. -||+ ...+..+....+. |+..+.+ ...+.+.++++
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVv 266 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVV 266 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEE
Confidence 3 344666777777777777766654 3333 2222222222221 1111110 01111122111
Q ss_pred ---------------CCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhH-------------------------
Q 039362 227 ---------------SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW------------------------- 266 (440)
Q Consensus 227 ---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------------- 266 (440)
..-+..-..|+-.|.+.++..+|..+.+.+....|.....
T Consensus 267 FrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqff 346 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFF 346 (557)
T ss_pred EeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Confidence 0011223345555777788888877777665333322221
Q ss_pred ----------------HHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCC
Q 039362 267 ----------------NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV 330 (440)
Q Consensus 267 ----------------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 330 (440)
..+.+.+.-..++++++-.+......-...|...| .+.++.+..|++.+|+++|-++....++
T Consensus 347 qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik 425 (557)
T KOG3785|consen 347 QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK 425 (557)
T ss_pred HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh
Confidence 12222222222333333333333322111122222 2344555556666666666555443332
Q ss_pred CCcchH-HHHHHHHHhcCCHHHHHHHHhcCCCCccHhH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 039362 331 PKSEHY-ACMVDALSRAGQVTEAYEFICQMPLEPTASM-LGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397 (440)
Q Consensus 331 ~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 397 (440)
|..+| ..|.++|.++++++-|.+++-++....+..+ +..+...|.+.+.+=-|.+.|+.+..++|.
T Consensus 426 -n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 426 -NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred -hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 33333 3445566666666666666666643333322 233344555666666666666666666544
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.41 E-value=6.9e-10 Score=95.17 Aligned_cols=127 Identities=8% Similarity=-0.184 Sum_probs=67.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 039362 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241 (440)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 241 (440)
.|..+...|...|++++|...|++..+.. +.+...|..+...+...|++++|...|+...+.. +.+..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 35555555566666666666666655543 3344555555556666666666666666665544 334455555555556
Q ss_pred hcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 039362 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ 290 (440)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 290 (440)
..|++++|...|++..+..|+..............+++++|...|.+..
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6666666666666655554433211111112233455566666664433
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.41 E-value=2.1e-10 Score=103.78 Aligned_cols=257 Identities=15% Similarity=0.089 Sum_probs=172.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc---
Q 039362 168 DGYVKCGDYKEALVIFEEMRDVGSKANE-VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC--- 243 (440)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 243 (440)
..+...|++++|++.++.-... .+|. .........+.+.|+.++|..++..+++.+ |.+..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 3456677777777777664333 3333 344455666677777777777777777776 55555556665555222
Q ss_pred --CCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChH-HHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHH
Q 039362 244 --GAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK-ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320 (440)
Q Consensus 244 --g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 320 (440)
.+.+....+|+++....|.......+.-.+.....+. .+...+..+...|+|+ +|..+-..|......+-...+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 2456667777777665555444433333333222232 3555666677777554 455555555544444444555
Q ss_pred HHHHhhc----C----------CCCCcc--hHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc-HhHHHHHHHHHHhcCChh
Q 039362 321 FKSLGKR----G----------MVPKSE--HYACMVDALSRAGQVTEAYEFICQM-PLEPT-ASMLGSLLTGCMNHGKLD 382 (440)
Q Consensus 321 ~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 382 (440)
+...... + -.|+.. ++..+.+.|...|++++|++++++. ...|+ +..|..-++.+-+.|+++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 5544322 1 123332 3456778888999999999999987 66776 577888888999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 383 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
+|.+.++.++.+++.|...-+..+..+.++|+.++|.+++....+.+.
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999999999988888889999999999999999988877665
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.39 E-value=5e-09 Score=93.02 Aligned_cols=395 Identities=14% Similarity=0.091 Sum_probs=264.2
Q ss_pred ChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039362 27 RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIH 106 (440)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (440)
....|..++.. ...+++...++..+...+. .+-...|.....-.+...|+.++|..........++. +...|..+.-
T Consensus 7 E~~lF~~~lk~-yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl 83 (700)
T KOG1156|consen 7 ENALFRRALKC-YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHH-HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHH
Confidence 33445555554 4567888888888887773 4445566666666677889999999988888776654 6778888888
Q ss_pred HHHhcCCHHHHHHHhhCCCC---CchhhHHHHHHHHHhcCChHHHHHHHhhCCC---CchhhHHHHHHHHHhcCCHHHHH
Q 039362 107 MYGSCGDIVYAREVFDGMPT---KMSVSWNSMLDGYAKCGEMNMARQVFELMPE---RNVVSWSALIDGYVKCGDYKEAL 180 (440)
Q Consensus 107 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 180 (440)
.+....++++|++.|..... .|...|.-+.-.-.+.++++.....-....+ .....|..++.++.-.|++..|.
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999987653 3556677666667777888877776666554 24457888888889999999999
Q ss_pred HHHHHHHhcC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 039362 181 VIFEEMRDVG-SKANEVTLVSVL------CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVF 253 (440)
Q Consensus 181 ~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 253 (440)
.+++...+.. ..|+...+.... ......|.++.|.+.+......- ......-..-...+.+.+++++|..++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 9999987664 246655544322 23456778888887776654331 222223345567788999999999999
Q ss_pred hhhhhcCCchhhHHHHHH-HHHhcCChHHHH-HHHHHHHHcCCCccHhhHHHH-HHHHHcCCChHHHHHHHHHHhhcCCC
Q 039362 254 HGVEKHQSDVLIWNAMIG-GLAMHGFVKESL-ELFTEMQIVGITPDEITFLGL-LSACAHGGLVMEAWYFFKSLGKRGMV 330 (440)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~ 330 (440)
..+....||...|..... ++.+..+..++. .+|....+. .|....-.-+ +.......-.+....++....+.|++
T Consensus 243 ~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 243 RRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 999988888776665544 443333333444 666655443 2222111111 11111223344555677777777765
Q ss_pred CCcchHHHHHHHHHhcCCHHH----HHHHHhcC-C------------CCccHhH--HHHHHHHHHhcCChhHHHHHHHHH
Q 039362 331 PKSEHYACMVDALSRAGQVTE----AYEFICQM-P------------LEPTASM--LGSLLTGCMNHGKLDLAEIVGKKL 391 (440)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~-~------------~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~ 391 (440)
+ ++..+...|-.-...+- +..+...+ + -.|.... +..++..+-..|+++.|..+++.+
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4 33333333332222111 11222222 1 1455544 455677788999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 392 VELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
++..|.-...|..-+..+...|..++|...+++..+...
T Consensus 398 IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 398 IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 999999888999999999999999999999999887654
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=1.5e-08 Score=83.65 Aligned_cols=382 Identities=13% Similarity=0.077 Sum_probs=229.2
Q ss_pred HHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 039362 35 IRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114 (440)
Q Consensus 35 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 114 (440)
+.-+....++..|+.+++--...+-.-...+-.-+..++.+.|++++|...+..+.+.. .++......|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 55677788999999999876543322222333445567789999999999999988754 55667777788788888999
Q ss_pred HHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 039362 115 VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194 (440)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 194 (440)
.+|..+-.+..+ ++..-..|.....+.++-++-..+-+.+.+ ....--++.......-.+.+|+++|.+.... .|+
T Consensus 108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~e 183 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPE 183 (557)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chh
Confidence 999999887754 333445556666677777766665555543 2233344555555566799999999998765 444
Q ss_pred HHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc--CCHHH----------------HHHHHh-
Q 039362 195 EVTLVS-VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC--GAIKE----------------ALIVFH- 254 (440)
Q Consensus 195 ~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~----------------A~~~~~- 254 (440)
-...+. +.-+|.+..-++-+.++++-.++.- +.++...+..+....+. |+..+ +..+.+
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 444443 4446678888888888888777653 44444444443333321 22111 111111
Q ss_pred ----------------hhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHH-----------
Q 039362 255 ----------------GVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA----------- 307 (440)
Q Consensus 255 ----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~----------- 307 (440)
.+.+. -+..--.++-.|.+.++..+|..+.+++... .|-......+..+
T Consensus 263 NLVvFrngEgALqVLP~L~~~--IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKH--IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred CeEEEeCCccHHHhchHHHhh--ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHH
Confidence 11100 1122234555677889999998888765421 3333333222222
Q ss_pred ------------------------------HHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHh
Q 039362 308 ------------------------------CAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357 (440)
Q Consensus 308 ------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (440)
+.-..++++.+.+++.+..--...|...+ .+.++++..|.+.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 11223445555555555443222222222 46777888888888888887
Q ss_pred cC-CCC-ccHhHHHH-HHHHHHhcCChhHHHHHHHHHHhcC-CCCCc-hHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 358 QM-PLE-PTASMLGS-LLTGCMNHGKLDLAEIVGKKLVELQ-PDHDG-RYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 358 ~~-~~~-p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
+. +.+ .|..+|.. |.++|.+.++++.|..+ +++.+ |.+.. .+...+..|.+.+.+=-|.+.|+.+....+
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 77 222 24455544 55667788887766544 44444 33322 234556677788887777777777765543
No 78
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=1.2e-12 Score=78.65 Aligned_cols=50 Identities=32% Similarity=0.638 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhc
Q 039362 26 PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGR 75 (440)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 75 (440)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888764
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=7.6e-10 Score=85.68 Aligned_cols=201 Identities=13% Similarity=0.020 Sum_probs=146.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhc
Q 039362 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMH 276 (440)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 276 (440)
..-+.-.|...|++..|..-+++.++.. |.+..++..+...|.+.|..+.|.+.|++..+..| +..+.|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 4445566777888888888888887776 66677777788888888888888888888777766 466777788888888
Q ss_pred CChHHHHHHHHHHHHcCCCc-cHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 039362 277 GFVKESLELFTEMQIVGITP-DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355 (440)
Q Consensus 277 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (440)
|++++|...|++....-.-| -..||..+.-+..+.|+.+.|..+|++.++... -.......+.+...+.|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHH
Confidence 88888888888877642222 234677777777788888888888888877531 1344566677777888888888888
Q ss_pred HhcC--CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 039362 356 ICQM--PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400 (440)
Q Consensus 356 ~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (440)
++.. ...++..++...++.-...|+.+.+-++=.++.+..|.+..
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 8776 33467777767777777788888887777777777776653
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=2.6e-10 Score=101.96 Aligned_cols=233 Identities=15% Similarity=0.107 Sum_probs=176.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--C
Q 039362 161 VSWSALIDGYVKCGDYKEALVIFEEMRDV-----GS-KANEV-TLVSVLCACAHLGALDQGRMMLRYMIDK-----G--L 226 (440)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~ 226 (440)
.+...+...|...|+++.|..+++...+. |. .|... ....+...|...+++++|..+|++++.. | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566889999999999999999987654 21 23332 3334677888999999999999998653 2 1
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc--------CCch-hhHHHHHHHHHhcCChHHHHHHHHHHHHc---CC
Q 039362 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH--------QSDV-LIWNAMIGGLAMHGFVKESLELFTEMQIV---GI 294 (440)
Q Consensus 227 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~ 294 (440)
+.-..+++.|..+|.+.|++++|..+++++.+. .|.+ ..++.++..+...+++++|..+++...+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 223456788889999999999999988887643 2222 24667778888999999999999876432 11
Q ss_pred Ccc----HhhHHHHHHHHHcCCChHHHHHHHHHHhhc----CC--CC-CcchHHHHHHHHHhcCCHHHHHHHHhcC----
Q 039362 295 TPD----EITFLGLLSACAHGGLVMEAWYFFKSLGKR----GM--VP-KSEHYACMVDALSRAGQVTEAYEFICQM---- 359 (440)
Q Consensus 295 ~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~---- 359 (440)
.++ ..+++.|...|...|++++|.+++++++.. +. .+ ....++.+...|.+.+++.+|.++|.+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 357899999999999999999999988765 11 11 2345778889999999999888888776
Q ss_pred ----CCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039362 360 ----PLEPTA-SMLGSLLTGCMNHGKLDLAEIVGKKLVE 393 (440)
Q Consensus 360 ----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 393 (440)
.-.|+. .+|..|+..|...|+++.|+++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 234444 6789999999999999999999998874
No 81
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=2.6e-12 Score=77.12 Aligned_cols=50 Identities=36% Similarity=0.611 Sum_probs=43.9
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHc
Q 039362 261 SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310 (440)
Q Consensus 261 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 310 (440)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888899999999999999999999999888889999999998888864
No 82
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=1.1e-09 Score=100.34 Aligned_cols=206 Identities=15% Similarity=0.132 Sum_probs=137.6
Q ss_pred CCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHH
Q 039362 24 SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNS 103 (440)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 103 (440)
..||.++|..+|..|+..|+.+.|- +|.-|.-...+.+...|+.++..+...++.+.+. .|.+.+|+.
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 3788899999999999999999998 8888876666566666666666666666555444 455566666
Q ss_pred HHHHHHhcCCHHH---HHHHhhCCCC---------------------C-chhhHHHHHHHHHhcCChHHHHHHH------
Q 039362 104 LIHMYGSCGDIVY---AREVFDGMPT---------------------K-MSVSWNSMLDGYAKCGEMNMARQVF------ 152 (440)
Q Consensus 104 l~~~~~~~g~~~~---a~~~~~~~~~---------------------~-~~~~~~~l~~~~~~~~~~~~a~~~~------ 152 (440)
|..+|...||+.. ..+.+..+.. | ....-...+....-.|-++.+++++
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 6666666666433 2221111100 0 0000011111112222233333222
Q ss_pred ---------------------------hhCCC-CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039362 153 ---------------------------ELMPE-RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204 (440)
Q Consensus 153 ---------------------------~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (440)
....+ +++.+|..++.+-..+|+.+.|..++.+|.+.|++.+.+-|-.++-+
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 22222 67888999999999999999999999999999988888877776655
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 039362 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244 (440)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 244 (440)
.++...++.++.-|.+.|+.|+..|+...+..+.++|
T Consensus 249 ---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 249 ---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred ---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 7888889999999999999999998877666655543
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.7e-09 Score=93.96 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=77.5
Q ss_pred cCChhhHHHHhhhc---CCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHhhchhcHHHHHHH
Q 039362 10 LGNIDYSCKVLSHL---SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD-HLTYPFLAKASGRLAKRELAVAV 85 (440)
Q Consensus 10 ~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 85 (440)
.|+++.|...|-.. .++|-+.|..-..+|+..|++++|++=-.+..+ +.|+ +..|.....++.-.|++++|+..
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 39999999999764 367777888888899999999999887777666 4566 45688899999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHH
Q 039362 86 HAQIAKTGYESDLFISNSLIHMY 108 (440)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~ 108 (440)
|.+-++..+. +...++.+..++
T Consensus 93 y~~GL~~d~~-n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 93 YSEGLEKDPS-NKQLKTGLAQAY 114 (539)
T ss_pred HHHHhhcCCc-hHHHHHhHHHhh
Confidence 9998887543 677778887777
No 84
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.35 E-value=1.1e-09 Score=98.54 Aligned_cols=311 Identities=15% Similarity=0.130 Sum_probs=182.7
Q ss_pred HHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHH
Q 039362 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148 (440)
Q Consensus 69 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (440)
.|+.|.+.|.+-.|.+....-.. ...|......+..++.+..-+++|-.+|+++..++. .+.+|.+-.-+-+|
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~ka 693 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKA 693 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHH
Confidence 34455555555544443221111 223444444444555555555555555555543221 22222222233333
Q ss_pred HHHHhhCCCCchh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039362 149 RQVFELMPERNVV-SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS 227 (440)
Q Consensus 149 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (440)
.++-+-.-...+. .-......+...|+++.|...|-+.. .....+.+......+.+|+.+++.+.+++
T Consensus 694 ielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk-- 762 (1636)
T KOG3616|consen 694 IELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK-- 762 (1636)
T ss_pred HHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--
Confidence 3333222111111 11222344555666666666554432 22234556667778888888888887664
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHH
Q 039362 228 LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307 (440)
Q Consensus 228 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 307 (440)
....-|..+...|...|+++.|.++|.+.. .++-.|..|.+.|+|..|.++-.+.. |.......|..-..-
T Consensus 763 ~~s~yy~~iadhyan~~dfe~ae~lf~e~~-------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaed 833 (1636)
T KOG3616|consen 763 TASGYYGEIADHYANKGDFEIAEELFTEAD-------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAED 833 (1636)
T ss_pred cccccchHHHHHhccchhHHHHHHHHHhcc-------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHh
Confidence 334456778888889999999988887654 45667788889999998888776644 223333445555555
Q ss_pred HHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHH
Q 039362 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIV 387 (440)
Q Consensus 308 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 387 (440)
+-+.|++.+|+++|-.+.. |+ ..|..|-+.|..+..+++.++..-..-..|...+..-+-..|+...|...
T Consensus 834 ldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 834 LDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred HHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHH
Confidence 6677888888877654322 44 35677888888888888888763233345666777777788888888877
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHH
Q 039362 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423 (440)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 423 (440)
|-++- -|.+...+|...+-|++|.++-+
T Consensus 905 flea~--------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 905 FLEAG--------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHhhh--------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 76542 35566677777777777766554
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=6.1e-08 Score=85.41 Aligned_cols=387 Identities=12% Similarity=0.034 Sum_probs=232.0
Q ss_pred HHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 039362 35 IRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114 (440)
Q Consensus 35 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 114 (440)
++-+...|++++|.....++...+ +.|...+..-+-++.+.+.+++|+.+.+.-... ..+...+..=+-+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 456788899999999999998864 445566777777888999999998655432211 11111112223345678999
Q ss_pred HHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCC
Q 039362 115 VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV-KCGDYKEALVIFEEMRDVGSKA 193 (440)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~ 193 (440)
++|...++.....+..+...-...+.+.|++++|..+|+.+.+.+...+..-+.+-+ ..+.-..+. + +......|
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~---~q~v~~v~ 171 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-L---LQSVPEVP 171 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-H---HHhccCCC
Confidence 999999996666666677777888999999999999999997655544443333211 111111111 1 22222233
Q ss_pred CHHHHH---HHHHHHHhcCChHHHHHHHHHHHHcCC-------CCch-------hhHHHHHHHHHhcCCHHHHHHHHhhh
Q 039362 194 NEVTLV---SVLCACAHLGALDQGRMMLRYMIDKGL-------SLTL-------PLQTSLIDMYAKCGAIKEALIVFHGV 256 (440)
Q Consensus 194 ~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~ 256 (440)
..+|. .....+...|++.+|+++++...+.+. ..+. .+-..+..++...|+.++|..+|..+
T Consensus 172 -e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 172 -EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred -cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 22343 334456788999999999999833210 1111 12234566778899999999999988
Q ss_pred hhcCC-chh----hHHHHHHHHHhcCC----------------hHHHHHHH-------------------------HHHH
Q 039362 257 EKHQS-DVL----IWNAMIGGLAMHGF----------------VKESLELF-------------------------TEMQ 290 (440)
Q Consensus 257 ~~~~~-~~~----~~~~l~~~~~~~~~----------------~~~a~~~~-------------------------~~m~ 290 (440)
.+..| |.. .-|.++..-....- .+.+...| ++..
T Consensus 251 i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 251 IKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred HHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 76533 321 11222211000000 00000000 0000
Q ss_pred Hc--CCCccHhhHHHHHHHHHc--CCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHh--------c
Q 039362 291 IV--GITPDEITFLGLLSACAH--GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC--------Q 358 (440)
Q Consensus 291 ~~--~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~ 358 (440)
.. +..|. ..+..++..+.+ ...+..+..++....+....-...+....++.....|+++.|.+++. .
T Consensus 331 a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 331 ASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred HhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 00 11222 233444443322 22466777777776664322234456667788889999999999998 4
Q ss_pred C-CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCC---CchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 359 M-PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ----PDH---DGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 359 ~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
. .+.-.+.+...+...+.+.++.+.|..++..++..- +.. ...+..++..-.+.|+-++|..+++++++.+.
T Consensus 410 ~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 410 ILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred hhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 3 333344555666777778888888888888877632 222 22455556666778999999999999988543
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=1.7e-08 Score=91.57 Aligned_cols=371 Identities=11% Similarity=0.018 Sum_probs=242.3
Q ss_pred CChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCC-cHHHHHHH
Q 039362 26 PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYES-DLFISNSL 104 (440)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 104 (440)
.+...|..|.-++.+.|+++.+.+.|++.... .-.....|..+...+...|.-..|..+++........| ++..+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 46677888888888888999988888887653 23345567777777888888888888888776654333 33344333
Q ss_pred HHHHHh-cCCHHHHHHHhhCCCC--------CchhhHHHHHHHHH-----------hcCChHHHHHHHhhCCC---Cchh
Q 039362 105 IHMYGS-CGDIVYAREVFDGMPT--------KMSVSWNSMLDGYA-----------KCGEMNMARQVFELMPE---RNVV 161 (440)
Q Consensus 105 ~~~~~~-~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~-----------~~~~~~~a~~~~~~~~~---~~~~ 161 (440)
-..|.+ .+..+++..+-.++.+ ..+..|..+.-+|. +.....++.+.+++..+ .|+.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 344433 3555555444433322 13344555544442 22224456666666643 2344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC------------
Q 039362 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSL------------ 228 (440)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------------ 228 (440)
+...+.--|+..++.+.|.+..++..+.+-.-+...+..+.-.+...+++.+|+.+.+..... +...
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 444445567778889999999998888765777888888888888889999998888776543 2100
Q ss_pred ------chhhHHHHHHHHHh------c-----------------CCHHHHHHHHhhhh-----------------hc---
Q 039362 229 ------TLPLQTSLIDMYAK------C-----------------GAIKEALIVFHGVE-----------------KH--- 259 (440)
Q Consensus 229 ------~~~~~~~l~~~~~~------~-----------------g~~~~A~~~~~~~~-----------------~~--- 259 (440)
...+...++..+-. . ++..+|......+. ..
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 01122222222210 0 01111111111110 00
Q ss_pred -CCch------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCC-
Q 039362 260 -QSDV------LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP- 331 (440)
Q Consensus 260 -~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 331 (440)
.|+. ..|......+.+.++.++|...+.+..... +-....|......+...|.+.+|.+.|......+ |
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--P~ 716 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD--PD 716 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC--CC
Confidence 1111 134455667778888888888888776542 4455667777777888899999999999888753 4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHH--HHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 039362 332 KSEHYACMVDALSRAGQVTEAYE--FICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400 (440)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (440)
++.+..++...+.+.|+..-|.. ++..+ .+.| ++..|..+...+.+.|+.+.|.+.|..+.++.+.+|.
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 56678899999999998877777 88887 6677 5689999999999999999999999999999877764
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.29 E-value=1.8e-08 Score=82.81 Aligned_cols=300 Identities=14% Similarity=0.075 Sum_probs=182.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHH---HHHHhcCChHHHHHHHhhCCCCchhhHHHH---HHHHHhcC
Q 039362 101 SNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSML---DGYAKCGEMNMARQVFELMPERNVVSWSAL---IDGYVKCG 174 (440)
Q Consensus 101 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~ 174 (440)
.--+...+...|++..|+.-|....+-|+..|.++. ..|...|+..-|+.-+.++.+..+..+.+- ...+.++|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 334444455555555555555555555554444442 234555555555555555443222222221 23455666
Q ss_pred CHHHHHHHHHHHHhcCCCCC--H------------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 039362 175 DYKEALVIFEEMRDVGSKAN--E------------VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240 (440)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~--~------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 240 (440)
++++|..-|+..++....-. . ......+..+...|+...|+.....+++.. +.+...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 66666666666655421100 0 011223334455677777887777777765 66777777777888
Q ss_pred HhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHH----H---HH------H
Q 039362 241 AKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL----G---LL------S 306 (440)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~---l~------~ 306 (440)
...|++..|+.-++.+.+... +...+-.+-..+...|+.+.++...++..+. .||..... . +. .
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHH
Confidence 888888888777777665533 4555556666677777777777777776653 45543211 1 11 1
Q ss_pred HHHcCCChHHHHHHHHHHhhcCCCCC---cchHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc-HhHHHHHHHHHHhcCCh
Q 039362 307 ACAHGGLVMEAWYFFKSLGKRGMVPK---SEHYACMVDALSRAGQVTEAYEFICQM-PLEPT-ASMLGSLLTGCMNHGKL 381 (440)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~ 381 (440)
.....++|.++.+-.+...+...... ...+..+-.++...|++.+|++...+. .+.|+ +.++..-..+|.-...+
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 12345677777777777777532211 223445666777888999999888887 66775 67888888888888899
Q ss_pred hHHHHHHHHHHhcCCCCCchHH
Q 039362 382 DLAEIVGKKLVELQPDHDGRYV 403 (440)
Q Consensus 382 ~~a~~~~~~~~~~~~~~~~~~~ 403 (440)
+.|+.-|+++.+.++++..+-.
T Consensus 358 D~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 358 DDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHHHHHhcCcccHHHHH
Confidence 9999999999999888765433
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.29 E-value=4.1e-09 Score=81.75 Aligned_cols=193 Identities=15% Similarity=0.105 Sum_probs=128.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 039362 163 WSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242 (440)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 242 (440)
...+.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|++.++.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4445566777777777777777777663 3345566666677777777777777777777665 5566677777777777
Q ss_pred cCCHHHHHHHHhhhhhc---CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHH
Q 039362 243 CGAIKEALIVFHGVEKH---QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319 (440)
Q Consensus 243 ~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 319 (440)
.|++++|...|++.... .....+|..+.-+..+.|+++.|...|++..+.. +-...+...+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 77777777777776653 1134566666666777777777777777776653 3334456666666677777777777
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC
Q 039362 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (440)
+++.....+. ++..+....|+.-...|+.+.+.++=..+
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7777666543 66666666666666777766665554444
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.29 E-value=1.1e-10 Score=98.52 Aligned_cols=250 Identities=15% Similarity=0.162 Sum_probs=152.8
Q ss_pred HHHHhcCChHHHHHHHhhCCC----CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 039362 137 DGYAKCGEMNMARQVFELMPE----RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD 212 (440)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 212 (440)
+-+.-.|++..++.-.+ ... .+......+.+++...|+++.++. ++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455688888876554 211 123345556788888888776543 333332 566666655555554434445
Q ss_pred HHHHHHHHHHHcCCC-CchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039362 213 QGRMMLRYMIDKGLS-LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291 (440)
Q Consensus 213 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 291 (440)
.+..-++........ .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555544444333322 23333333445566778888888887764 3455666677888888888888888888876
Q ss_pred cCCCccHhhHHHHHHHHHc----CCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cH
Q 039362 292 VGITPDEITFLGLLSACAH----GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TA 365 (440)
Q Consensus 292 ~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~ 365 (440)
. ..| .+...+..++.. .+.+.+|..+|+++.+. +.++..+.+.+..+....|++++|.+++++. ...| ++
T Consensus 160 ~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 160 I--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp C--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred c--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 4 233 344445444432 34688888888887664 4567777788888888888888888888876 3333 55
Q ss_pred hHHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCC
Q 039362 366 SMLGSLLTGCMNHGKL-DLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 366 ~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 399 (440)
.++..++.+....|+. +.+.+++.++....|.++
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 6777777777777777 667778888888877765
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=2.9e-10 Score=99.42 Aligned_cols=222 Identities=10% Similarity=0.025 Sum_probs=180.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHH
Q 039362 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKES 282 (440)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 282 (440)
-+.+.|++.+|.-.|+..++.+ |.+...|..|.......++-..|+..+++..+.+| |......|...|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3468899999999999999887 88999999999999999999999999999998888 577888999999999999999
Q ss_pred HHHHHHHHHcCCC-----c---cHhhHHHHHHHHHcCCChHHHHHHHHHHhhc-CCCCCcchHHHHHHHHHhcCCHHHHH
Q 039362 283 LELFTEMQIVGIT-----P---DEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAY 353 (440)
Q Consensus 283 ~~~~~~m~~~~~~-----p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 353 (440)
...|+.......+ + +...-.. ..+.....+....++|-++... +..+|..+...|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999998654311 0 0000000 1111222334444555555444 55578889999999999999999999
Q ss_pred HHHhcC-CCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 354 EFICQM-PLEPT-ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 354 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
+.|+.+ .++|+ ..+||.|...++...+.++|+..|.+++++.|.-..+...|+..|...|.+++|.+.|=+.+..
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999998 77885 4789999999999999999999999999999999999999999999999999999998776654
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.28 E-value=7.3e-09 Score=85.02 Aligned_cols=295 Identities=14% Similarity=0.088 Sum_probs=224.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHh
Q 039362 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSAL---IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLV-SVLCACAH 207 (440)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~ 207 (440)
.--+.+.+...|++.+|+.-|....+-|+..|.++ ...|...|+...|+.-+.+.++. +||-..-. .-...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 33466778888999999999999998777766655 45788999999999999988876 77754332 22345679
Q ss_pred cCChHHHHHHHHHHHHcCCCCc--hhh------------HHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHH
Q 039362 208 LGALDQGRMMLRYMIDKGLSLT--LPL------------QTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGG 272 (440)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~--~~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 272 (440)
+|.++.|..-|+.+++...... ... ....+..+.-.|+...|+.....+.+.+| |...+..-..+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 9999999999999998753211 111 12334456678999999999999998877 77888888999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcch----HHHH---------
Q 039362 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEH----YACM--------- 339 (440)
Q Consensus 273 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l--------- 339 (440)
|...|++..|+.-++...+.. ..+..++.-+-..+...|+.+.++...++-++. .||... |..+
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999888876654 445556666667777889999998888888774 465432 2221
Q ss_pred HHHHHhcCCHHHHHHHHhcC-CCCcc-----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc
Q 039362 340 VDALSRAGQVTEAYEFICQM-PLEPT-----ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413 (440)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 413 (440)
+......++|.++++-.+.. ...|. ...+..+-.++...|++.+|++...++++.+|++..++---+.+|.-..
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 12234567788887777765 45554 2345566677788999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCc
Q 039362 414 RWDEARTTREAMETRGVK 431 (440)
Q Consensus 414 ~~~~A~~~~~~~~~~~~~ 431 (440)
.++.|+.-|+...+.+..
T Consensus 356 ~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 999999999998876543
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=6.2e-09 Score=83.79 Aligned_cols=79 Identities=15% Similarity=0.026 Sum_probs=49.0
Q ss_pred HHhcCCHHHHHHHHhcCC----CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHH
Q 039362 343 LSRAGQVTEAYEFICQMP----LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEA 418 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 418 (440)
+.+.|+++.|.+-+..|+ ...|+.|+..+.-.- ..+++.+..+-+.-+++.+|-++.++..++..|++..-++-|
T Consensus 251 eyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 251 EYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred hhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHH
Confidence 446677777777777772 234555555444322 234555556666666666776667777777777777777766
Q ss_pred HHHH
Q 039362 419 RTTR 422 (440)
Q Consensus 419 ~~~~ 422 (440)
..++
T Consensus 330 ADvL 333 (459)
T KOG4340|consen 330 ADVL 333 (459)
T ss_pred HHHH
Confidence 6655
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.24 E-value=7.1e-08 Score=86.02 Aligned_cols=260 Identities=13% Similarity=-0.033 Sum_probs=151.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 039362 167 IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH----LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242 (440)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 242 (440)
...+...|++++|.+.+++..+.. +.+...+.. ...+.. .+..+.+.+.+.... ...+........+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHH
Confidence 345566788888888888877653 323333332 112222 344444444444311 1112233344456677788
Q ss_pred cCCHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CccH--hhHHHHHHHHHcCCChHHHH
Q 039362 243 CGAIKEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGFVKESLELFTEMQIVGI-TPDE--ITFLGLLSACAHGGLVMEAW 318 (440)
Q Consensus 243 ~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~ 318 (440)
.|++++|...+++..+..|+ ...+..+...+...|++++|...+++...... .|+. ..+..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888777664 55667777788888888888888888765431 1222 23445677777888888888
Q ss_pred HHHHHHhhcCC-CCCcchH-H--HHHHHHHhcCCHHHHHHH---HhcC-C-CC--ccHhHHHHHHHHHHhcCChhHHHHH
Q 039362 319 YFFKSLGKRGM-VPKSEHY-A--CMVDALSRAGQVTEAYEF---ICQM-P-LE--PTASMLGSLLTGCMNHGKLDLAEIV 387 (440)
Q Consensus 319 ~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~-~-~~--p~~~~~~~l~~~~~~~g~~~~a~~~ 387 (440)
.+++++..... .+..... + .++.-+...|....+.++ .... . .. ...........++...|+.+.|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 88888754321 1111111 1 222233334432222222 1111 1 01 1112223466667789999999999
Q ss_pred HHHHHhcCCC---------CCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 388 GKKLVELQPD---------HDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 388 ~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
++.+...... ........+.++...|++++|.+.+...+...
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9888764321 12234556667788999999999998887653
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.14 E-value=8.7e-09 Score=87.07 Aligned_cols=244 Identities=12% Similarity=0.026 Sum_probs=114.6
Q ss_pred HHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 039362 37 GYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVY 116 (440)
Q Consensus 37 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 116 (440)
-+.-.|++..++.-.+ .....-..+......+.+++...|+++.++ .++.... .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445666666665444 221111112223444556666666655433 2332222 4455555444444433344444
Q ss_pred HHHHhhCCC-CC----chhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 039362 117 AREVFDGMP-TK----MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS 191 (440)
Q Consensus 117 a~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 191 (440)
+..-+++.. ++ +..........+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.+
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~- 161 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID- 161 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 544443322 21 1112222223445566666666666554 344555555666666666666666666665542
Q ss_pred CCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhH
Q 039362 192 KANEVTLVSVLCACAH----LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIW 266 (440)
Q Consensus 192 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 266 (440)
+..+...+..++.. ...+.+|..+|+++.+. .++++.+.+.+..++...|++++|..++.+.....| +..+.
T Consensus 162 --eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 --EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp --CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred --CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 22333333333322 22466666666665443 245555556666666666666666666665554433 34444
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHH
Q 039362 267 NAMIGGLAMHGFV-KESLELFTEMQI 291 (440)
Q Consensus 267 ~~l~~~~~~~~~~-~~a~~~~~~m~~ 291 (440)
..++......|+. +.+.+.+.++..
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 4455554555554 444555555544
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.6e-06 Score=79.81 Aligned_cols=226 Identities=17% Similarity=0.151 Sum_probs=122.7
Q ss_pred ccccccccCChhhHHHHhhhcCCCChHHHHHHHHHHHccCChhhHHHHHHHHHHc-C-------C-CCCcchHHHHHHHh
Q 039362 3 SFSALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-G-------V-SPDHLTYPFLAKAS 73 (440)
Q Consensus 3 ~~y~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~-~~~~~~~~~l~~~~ 73 (440)
++|..- |+.+.|.+-.+-+.+ ...|..|.+.|.+..+.+-|.-.+-.|... | . .|+ .+=..+.-..
T Consensus 736 Sfyvti--G~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 736 SFYVTI--GSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred eEEEEe--ccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 356666 888888776666543 467888888888888777777666665421 1 1 121 2222223333
Q ss_pred hchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCC-chhhHHHHHHHHHhcCChHHHHHHH
Q 039362 74 GRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK-MSVSWNSMLDGYAKCGEMNMARQVF 152 (440)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 152 (440)
...|.+++|+.+|.+.... ..|=..|-..|.+++|.++-+.-..- -..||......+...++.+.|++.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 5667778888887776543 23334555677888887776543221 1235555666666677777777777
Q ss_pred hhCCCC-----------------------chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 039362 153 ELMPER-----------------------NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209 (440)
Q Consensus 153 ~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 209 (440)
++...+ |...|.-....+-..|+.+.|+.+|....+ |..+++..|-.|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeecc
Confidence 765432 222233333333334444444444443321 223334444445
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhh
Q 039362 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257 (440)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 257 (440)
+.++|.++-++ ..|....-.+...|-..|++.+|..+|.+..
T Consensus 953 k~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 953 KTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred CchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 55555444332 2233444455566666666666666655543
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.13 E-value=5.1e-07 Score=91.12 Aligned_cols=323 Identities=13% Similarity=-0.010 Sum_probs=209.5
Q ss_pred HHHhcCCHHHHHHHhhCCCC----CchhhHHHHHHHHHhcCChHHHHHHHhhCCC----C----c----hhhHHHHHHHH
Q 039362 107 MYGSCGDIVYAREVFDGMPT----KMSVSWNSMLDGYAKCGEMNMARQVFELMPE----R----N----VVSWSALIDGY 170 (440)
Q Consensus 107 ~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~----~----~~~~~~l~~~~ 170 (440)
.....|+++.+...++.+.. .+..........+...|+++++...+..... . + ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 44556777777777777642 1233333444555678899999888876532 1 1 11222334556
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCc--hhhHHHHHHHHH
Q 039362 171 VKCGDYKEALVIFEEMRDVGSKANE----VTLVSVLCACAHLGALDQGRMMLRYMIDKGL---SLT--LPLQTSLIDMYA 241 (440)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~ 241 (440)
...|++++|...+++....-...+. .....+...+...|+++.|...+.+.....- .+. ......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7889999999999987653111121 2344555667789999999999888764321 111 234456677888
Q ss_pred hcCCHHHHHHHHhhhhhc-----CC----chhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCc--cHhhHHHHHHHH
Q 039362 242 KCGAIKEALIVFHGVEKH-----QS----DVLIWNAMIGGLAMHGFVKESLELFTEMQIVG--ITP--DEITFLGLLSAC 308 (440)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~-----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p--~~~~~~~l~~~~ 308 (440)
..|+++.|...+++.... .+ ....+..+...+...|++++|...+.+..... ..+ ....+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998876543 11 12234455566777899999999998875431 112 223445566677
Q ss_pred HcCCChHHHHHHHHHHhhcCCC-CCcchH-----HHHHHHHHhcCCHHHHHHHHhcCCC-C-ccH----hHHHHHHHHHH
Q 039362 309 AHGGLVMEAWYFFKSLGKRGMV-PKSEHY-----ACMVDALSRAGQVTEAYEFICQMPL-E-PTA----SMLGSLLTGCM 376 (440)
Q Consensus 309 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~-~-p~~----~~~~~l~~~~~ 376 (440)
...|+.+.|...+..+...... .....+ ...+..+...|+.+.|.+++..... . ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 7889999999999888653111 111111 1122445568999999999877621 1 111 12345677788
Q ss_pred hcCChhHHHHHHHHHHhcCCC------CCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 377 NHGKLDLAEIVGKKLVELQPD------HDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
..|++++|...++++...... ...+...++.++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999999875311 12356778889999999999999999998754
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=1e-06 Score=78.58 Aligned_cols=198 Identities=12% Similarity=-0.026 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcch---HHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 039362 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT---YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSL 104 (440)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 104 (440)
...|..+...+...|+++.+...+....+.. +++... .......+...|++++|.+.+++..+..+. +...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-
Confidence 4466677777777788888777776655432 222221 222233456678888888888888776433 3333331
Q ss_pred HHHHHh----cCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHH
Q 039362 105 IHMYGS----CGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180 (440)
Q Consensus 105 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 180 (440)
...+.. .+..+.+.+.+......++ ........+...+...|++++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------------~~~~~~~~~a~~~~~~G~~~~A~ 134 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENP----------------------------DYWYLLGMLAFGLEEAGQYDRAE 134 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCC----------------------------CcHHHHHHHHHHHHHcCCHHHHH
Confidence 112222 2333333333322111000 11223334445666677777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cch--hhHHHHHHHHHhcCCHHHHHHHHhhhh
Q 039362 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS-LTL--PLQTSLIDMYAKCGAIKEALIVFHGVE 257 (440)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 257 (440)
..+++..+.. +.+...+..+..++...|++++|...++...+.... ++. ..+..+...+...|++++|..++++..
T Consensus 135 ~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 135 EAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777766653 334455566666666777777777777766554311 111 223455666666677777766666654
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.6e-07 Score=81.94 Aligned_cols=375 Identities=14% Similarity=0.092 Sum_probs=214.3
Q ss_pred HHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 039362 35 IRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114 (440)
Q Consensus 35 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 114 (440)
.++....|+++.|+.+|.+.+... ++|...|..-..+|++.|++++|.+=-.+.++..+. =+..|.....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccH
Confidence 355678999999999999998864 457888999999999999999998877777665433 356788888899999999
Q ss_pred HHHHHHhhCCCCC---chhhHHHHHHHHHhcCChHHH-HHHH------hhCCC-C------chhhHHHHHHHHHhc----
Q 039362 115 VYAREVFDGMPTK---MSVSWNSMLDGYAKCGEMNMA-RQVF------ELMPE-R------NVVSWSALIDGYVKC---- 173 (440)
Q Consensus 115 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a-~~~~------~~~~~-~------~~~~~~~l~~~~~~~---- 173 (440)
++|+..|.+-.+. +...++-+..++ ..+.+ -+.| ..+.. | ....|..++..+.+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999987754 334555555555 11111 1111 00000 0 011222222222111
Q ss_pred ---CCHHHHHHHHHHHHhc--------C-------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCchhhHH
Q 039362 174 ---GDYKEALVIFEEMRDV--------G-------SKANEVTLVSVLCACAHLGALDQGRMMLRYMID-KGLSLTLPLQT 234 (440)
Q Consensus 174 ---~~~~~a~~~~~~~~~~--------~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ 234 (440)
.+.+...+..-.+... + ..|.. +. ...........+ .....-..-..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~-----------~~---~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCK-----------QE---HNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCccc-----------cc---CCCCCccchhHHHHHHHHhhhHHH
Confidence 0011111111111000 0 01100 00 000000000000 00000011223
Q ss_pred HHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHH-------HHHHH
Q 039362 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL-------GLLSA 307 (440)
Q Consensus 235 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------~l~~~ 307 (440)
.+.....+..+++.|+..+........+..-++....+|...|.+..+........+.|.. ...-|+ .+..+
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhh
Confidence 3444555555555565555555544433333444455555555555555555444444311 111111 12223
Q ss_pred HHcCCChHHHHHHHHHHhhcCCCCCcch-------------------------HHHHHHHHHhcCCHHHHHHHHhcC-CC
Q 039362 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEH-------------------------YACMVDALSRAGQVTEAYEFICQM-PL 361 (440)
Q Consensus 308 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~-~~ 361 (440)
+.+.++++.++..|.+.......|+... ...-...+.+.|++..|+..|.++ ..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 3444555555555555443322222111 112245567889999999999998 44
Q ss_pred Cc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 362 EP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 362 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
.| |...|..-..+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|++|.+.|++.++...
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 56 5678888999999999999999999999999999988898889999999999999999988887653
No 99
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.11 E-value=4.7e-07 Score=82.21 Aligned_cols=26 Identities=8% Similarity=-0.005 Sum_probs=12.3
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 402 YVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 402 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
...++..+-..|++++|-+-+-+.++
T Consensus 998 hlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 998 HLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred hhHHhhhhhhccchhhhhHhhHHHhh
Confidence 33444444455555555444444433
No 100
>PLN02789 farnesyltranstransferase
Probab=99.06 E-value=2e-07 Score=79.92 Aligned_cols=214 Identities=9% Similarity=-0.015 Sum_probs=111.5
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-CHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCCh--HHHHH
Q 039362 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG-AIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFV--KESLE 284 (440)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~--~~a~~ 284 (440)
+..++|.....++++.+ +.+..+|+.-..++...| ++++++..++++.+..| +..+|+.....+.+.|+. ++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 34444444444444443 333334433333344444 34555555555544433 233444333333333332 44555
Q ss_pred HHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc---CCH----HHHHHHHh
Q 039362 285 LFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA---GQV----TEAYEFIC 357 (440)
Q Consensus 285 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~a~~~~~ 357 (440)
+++++.+.. +-|..+|.....++.+.|+++++++.++++++.++. +...|+.....+.+. |.. ++.+++..
T Consensus 130 ~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 130 FTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 555555443 334445555555555555666666666666554422 344444444333332 212 34555553
Q ss_pred cC-CCCc-cHhHHHHHHHHHHhc----CChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc------------------
Q 039362 358 QM-PLEP-TASMLGSLLTGCMNH----GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK------------------ 413 (440)
Q Consensus 358 ~~-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------ 413 (440)
++ ...| +...|+.+...+... +...+|.+.+.++.+.+|.++.++..|+..|....
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 43 4445 345666666666552 34566888888877777888878888888887632
Q ss_pred ChHHHHHHHHHH
Q 039362 414 RWDEARTTREAM 425 (440)
Q Consensus 414 ~~~~A~~~~~~~ 425 (440)
..++|.++++.+
T Consensus 288 ~~~~a~~~~~~l 299 (320)
T PLN02789 288 DSTLAQAVCSEL 299 (320)
T ss_pred cHHHHHHHHHHH
Confidence 346788888777
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.05 E-value=3.6e-08 Score=95.01 Aligned_cols=202 Identities=13% Similarity=0.065 Sum_probs=128.1
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc-CC-----chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhh
Q 039362 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH-QS-----DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEIT 300 (440)
Q Consensus 227 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 300 (440)
|.+...|...+......++.++|+++.+++.+. .+ -...|.+++..-...|.-+...++|+++.+.- ..-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 445556666666667777777777777666532 11 22356666665555566666677777766531 12235
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc---HhHHHHHHHHHH
Q 039362 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPT---ASMLGSLLTGCM 376 (440)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~---~~~~~~l~~~~~ 376 (440)
|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|.++++++ ..-|. .......+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 666667777777777777777777765 1234556667777777777777777777665 32332 334444445555
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCCc
Q 039362 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431 (440)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 431 (440)
+.|+.+++..+|+..+...|.....|..+++.-.+.|+.+.++.+|+++...+++
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 6777777777777777777777777777777777777777777777777766654
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.04 E-value=2.9e-08 Score=79.26 Aligned_cols=120 Identities=12% Similarity=0.013 Sum_probs=75.0
Q ss_pred CCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHH-HhcCC--hhHHH
Q 039362 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGC-MNHGK--LDLAE 385 (440)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~a~ 385 (440)
.++.+++...++...+.. +.+...|..+...|...|++++|...+++. .+.| +...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 445555555555555543 235556666666677777777777777666 4444 345555555543 45555 46777
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCCc
Q 039362 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431 (440)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 431 (440)
.+++++++.+|.++.++..++..+.+.|++++|...++++++...+
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7777777777777777777777777777777777777777665543
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=4.8e-08 Score=85.90 Aligned_cols=250 Identities=17% Similarity=0.102 Sum_probs=187.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 039362 167 IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246 (440)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 246 (440)
..-+.+.|++.+|.=.|+..+..+ +-+...|..|.......++-..|+..+++.++.. +.+..+...|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 345678888999999999888774 4466788888888888888889999999999887 77888899999999999999
Q ss_pred HHHHHHHhhhhhcCCchhhHHH-----H-H--HHHHhcCChHHHHHHHHHH-HHcCCCccHhhHHHHHHHHHcCCChHHH
Q 039362 247 KEALIVFHGVEKHQSDVLIWNA-----M-I--GGLAMHGFVKESLELFTEM-QIVGITPDEITFLGLLSACAHGGLVMEA 317 (440)
Q Consensus 247 ~~A~~~~~~~~~~~~~~~~~~~-----l-~--~~~~~~~~~~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a 317 (440)
..|...++.-....|.-..... . . ..+.....+....++|-++ .+.+..+|+.....|.-.|.-.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 9999988876543221100000 0 0 1112222334455555554 4444447777788888888889999999
Q ss_pred HHHHHHHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039362 318 WYFFKSLGKRGMVP-KSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTA-SMLGSLLTGCMNHGKLDLAEIVGKKLVEL 394 (440)
Q Consensus 318 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 394 (440)
...|+.++.. +| |..+||.|.-.+....+.++|+..|+++ .++|.- .....|..+|+..|.+++|.+.|-.++.+
T Consensus 450 iDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999999885 45 6778999999999999999999999998 888865 67778999999999999999999999886
Q ss_pred CCCC----------CchHHHHHHHHHhccChHHHHH
Q 039362 395 QPDH----------DGRYVGLSNVYAIFKRWDEART 420 (440)
Q Consensus 395 ~~~~----------~~~~~~l~~~~~~~g~~~~A~~ 420 (440)
.+.+ ..+|..|=.++.-.++.|-+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 5431 1366666666666676664443
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=6.9e-08 Score=87.23 Aligned_cols=218 Identities=12% Similarity=-0.021 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHh
Q 039362 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAM 275 (440)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (440)
..-..+...+.+.|-...|..+++++. .+...+.+|...|+..+|..+..+..+.+|+...|..+......
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 334456667777788888888887654 45567888888888888888888877767788888888887777
Q ss_pred cCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 039362 276 HGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355 (440)
Q Consensus 276 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (440)
..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+.-+..+.+++..|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 77778888887764322 11111122234688999999998877753 23566788888888899999999999
Q ss_pred HhcC-CCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 356 ICQM-PLEPTA-SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 356 ~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
|... ...|+. ..|+++..+|.+.|+-.+|...+.++.+.+-.+..+|...+......|.+++|.+.+.++.....
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 9887 677866 78999999999999999999999999999988888999999999999999999999999987644
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.01 E-value=5.5e-08 Score=81.04 Aligned_cols=184 Identities=15% Similarity=0.028 Sum_probs=132.8
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCch----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHh---
Q 039362 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV----LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI--- 299 (440)
Q Consensus 227 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--- 299 (440)
......+..++..+...|++++|...|+++....|+. ..+..+..++...|++++|...++++.+.. |+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchH
Confidence 3456677788888999999999999999988776643 356778889999999999999999998763 3222
Q ss_pred -hHHHHHHHHHcC--------CChHHHHHHHHHHhhcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHH
Q 039362 300 -TFLGLLSACAHG--------GLVMEAWYFFKSLGKRGMVPKSE-HYACMVDALSRAGQVTEAYEFICQMPLEPTASMLG 369 (440)
Q Consensus 300 -~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~ 369 (440)
++..+..++... |+.++|.+.++.+.+.. |+.. .+..+... .. ..... .....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~~~~-----------~~~~~ 170 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HHHHH-----------HHHHH
Confidence 345555555544 67888999999888753 4332 22222111 11 11100 01112
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCC---chHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHD---GRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 370 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
.+...+.+.|++++|+..++++++..|.++ ..+..++.++...|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 566678899999999999999999877654 578899999999999999999999887654
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=3e-06 Score=85.61 Aligned_cols=366 Identities=11% Similarity=-0.045 Sum_probs=222.8
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 039362 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD-HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMY 108 (440)
Q Consensus 30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (440)
.+......+...|++.+|...+..... .+. ..............|+++.+..+++.+-......+..........+
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 455566677788888877765443311 110 0111222233445677777777766542111112222334445556
Q ss_pred HhcCCHHHHHHHhhCCCC----C----c----hhhHHHHHHHHHhcCChHHHHHHHhhCCC----Cc----hhhHHHHHH
Q 039362 109 GSCGDIVYAREVFDGMPT----K----M----SVSWNSMLDGYAKCGEMNMARQVFELMPE----RN----VVSWSALID 168 (440)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~----~----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----~~~~~~l~~ 168 (440)
...|+++++...+..... . + ......+...+...|++++|...++.... .+ ....+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 677888888877765421 1 1 11122233455678999999888877543 11 124456667
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC---CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC---chhhHHHH
Q 039362 169 GYVKCGDYKEALVIFEEMRDVGS---KAN--EVTLVSVLCACAHLGALDQGRMMLRYMIDK----GLSL---TLPLQTSL 236 (440)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l 236 (440)
.+...|++++|...+++.....- .+. ...+..+...+...|+++.|...+++..+. +... ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 77889999999999888754211 111 234455666778899999999988876543 2111 12334556
Q ss_pred HHHHHhcCCHHHHHHHHhhhhhc----CC--chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-cHhhH-----HHH
Q 039362 237 IDMYAKCGAIKEALIVFHGVEKH----QS--DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP-DEITF-----LGL 304 (440)
Q Consensus 237 ~~~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~-----~~l 304 (440)
...+...|++++|...+.+.... .+ ....+..+...+...|++++|.+.+.+........ ....+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 66778889999999998887543 12 12344456667788999999999998875421111 11111 111
Q ss_pred HHHHHcCCChHHHHHHHHHHhhcCCCCCc---chHHHHHHHHHhcCCHHHHHHHHhcC-------CCCcc-HhHHHHHHH
Q 039362 305 LSACAHGGLVMEAWYFFKSLGKRGMVPKS---EHYACMVDALSRAGQVTEAYEFICQM-------PLEPT-ASMLGSLLT 373 (440)
Q Consensus 305 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~p~-~~~~~~l~~ 373 (440)
+..+...|+.+.|...+............ ..+..+..++...|++++|...+++. +..++ ..+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 23345578999999888776542111110 11345677788999999999988876 22222 245666777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCC
Q 039362 374 GCMNHGKLDLAEIVGKKLVELQPDH 398 (440)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~~~~~ 398 (440)
++...|+.++|...+.++.+.....
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 8889999999999999999977443
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=2.3e-06 Score=78.76 Aligned_cols=356 Identities=10% Similarity=0.051 Sum_probs=207.7
Q ss_pred CCCChHHHHHHHHH--HHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHc-C-------
Q 039362 24 SNPRIFYWNTVIRG--YSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKT-G------- 93 (440)
Q Consensus 24 ~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~------- 93 (440)
..=|..+-..+++. |...|+.+.|.+-.+-.+. ...|..+.+.|.+.++.+-|.-.+-.|... |
T Consensus 722 e~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 722 ENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred cccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 34567777777754 7889999999887766543 457899999999988888777666555421 0
Q ss_pred -CCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC-CchhhHHHHHHHHH
Q 039362 94 -YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE-RNVVSWSALIDGYV 171 (440)
Q Consensus 94 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~ 171 (440)
-.++ .+-....-.....|.+++|..+|.+... |..|-+.|...|.|++|.++-+.-.+ .=..||......+-
T Consensus 796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 1121 2222333445677899999999987754 55666778888999999888665433 22346667777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 039362 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251 (440)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 251 (440)
..++.+.|++.|++.. .|-...+..|. .++.....+.+.+ .|...|......+-..|+.+.|+.
T Consensus 870 ar~Di~~AleyyEK~~----~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAG----VHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred hhccHHHHHHHHHhcC----ChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHH
Confidence 7888999999888642 11111111111 1222222232222 234566666666777788888888
Q ss_pred HHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcC--C
Q 039362 252 VFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG--M 329 (440)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~ 329 (440)
+|.... -|-.++...|-.|+.++|-++-++ .-|......+.+.|...|++.+|..+|.++.... +
T Consensus 934 ~Y~~A~-------D~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAI 1000 (1416)
T KOG3617|consen 934 FYSSAK-------DYFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAI 1000 (1416)
T ss_pred HHHHhh-------hhhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 887766 244555566667777777766553 2244455566777777777777777776654320 0
Q ss_pred C--CCcchHHHHHHHH--HhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHH----------HhcC
Q 039362 330 V--PKSEHYACMVDAL--SRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL----------VELQ 395 (440)
Q Consensus 330 ~--~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~----------~~~~ 395 (440)
. .....-..|.... ....+.-.|-.+|++.+...+ ..+..|-+.|.+.+|+++.-+. .+++
T Consensus 1001 RlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~-----~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 1001 RLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAH-----KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred HHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhh-----HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence 0 0000001111111 122234445555555542221 1122344566666655543221 1234
Q ss_pred C-CCCchHHHHHHHHHhccChHHHHHHHHHH
Q 039362 396 P-DHDGRYVGLSNVYAIFKRWDEARTTREAM 425 (440)
Q Consensus 396 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 425 (440)
| .+|.....-++.+....++++|..++-..
T Consensus 1076 ~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1076 AGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3 34456666677777777777777665443
No 108
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.1e-05 Score=76.14 Aligned_cols=258 Identities=12% Similarity=0.090 Sum_probs=119.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 039362 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGAL 211 (440)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 211 (440)
|..+..+-.+.|.+.+|++-|-+. .|+..|..+++...+.|.|++-.+.+.-..+..-.|... +.++-+|++.++.
T Consensus 1107 WsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRL 1182 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchH
Confidence 444444444444444444444333 233344444444444444444444443333332222222 2234444444444
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039362 212 DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291 (440)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 291 (440)
.+.++++. -|+......+..-+...|.++.|.-+|.. +..|..+...+...|++..|...-++
T Consensus 1183 ~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-------vSN~a~La~TLV~LgeyQ~AVD~aRK--- 1245 (1666)
T KOG0985|consen 1183 TELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN-------VSNFAKLASTLVYLGEYQGAVDAARK--- 1245 (1666)
T ss_pred HHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhh---
Confidence 33333221 23333334444444444444444444332 22455555555666666666554332
Q ss_pred cCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHH
Q 039362 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLG 369 (440)
Q Consensus 292 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~ 369 (440)
..+..||..+-.+|...+.+.-| .|...++.....-...++..|...|-+++.+.+++.. |+.- ....|.
T Consensus 1246 ---Ans~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfT 1317 (1666)
T KOG0985|consen 1246 ---ANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFT 1317 (1666)
T ss_pred ---ccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHH
Confidence 22445666666666655544322 2333233334445566777777777777777777765 4432 345555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHH
Q 039362 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424 (440)
Q Consensus 370 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 424 (440)
.|.-.|.+- ++++-.+.++-....- -.-.++.++-++.-|.+..-++.+
T Consensus 1318 ELaiLYsky-kp~km~EHl~LFwsRv-----NipKviRA~eqahlW~ElvfLY~~ 1366 (1666)
T KOG0985|consen 1318 ELAILYSKY-KPEKMMEHLKLFWSRV-----NIPKVIRAAEQAHLWSELVFLYDK 1366 (1666)
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHh
Confidence 665555544 3444444444332211 112345555555566665555443
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.97 E-value=4.5e-07 Score=84.92 Aligned_cols=386 Identities=14% Similarity=0.054 Sum_probs=222.5
Q ss_pred ChhhHHHHHHHHHHcCCCCC-cchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHh
Q 039362 43 NPNKSISLFVKMLRAGVSPD-HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF 121 (440)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 121 (440)
+...|+..|-+..+. .|+ ...|..|...|....+...|.+.|+...+.+.. +........+.|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHH
Confidence 356666666555553 233 346888888888888889999999999887643 6777888999999999999998885
Q ss_pred hCCCCCc-----hhhHHHHHHHHHhcCChHHHHHHHhhCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 039362 122 DGMPTKM-----SVSWNSMLDGYAKCGEMNMARQVFELMPE---RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA 193 (440)
Q Consensus 122 ~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 193 (440)
-...+.+ ...|....-.|...++..+|..-|+...+ .|...|..+..+|...|++..|+++|.+.... .|
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 4333322 12344445557788889999998888775 36678888999999999999999999888765 44
Q ss_pred CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhh-------c
Q 039362 194 NE-VTLVSVLCACAHLGALDQGRMMLRYMIDKG------LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK-------H 259 (440)
Q Consensus 194 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~ 259 (440)
+. ..-......-+..|.+.++...+..+.... ...-..++..+...+...|-..+|.+++++..+ .
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 43 222223334467889999998888875432 111223333333334444444444444443321 1
Q ss_pred --CCchhhHHHHHHHHHhcCC--hHH----HHHHH-HHHHHcCCC--------------------ccHhhHHHHHHHHHc
Q 039362 260 --QSDVLIWNAMIGGLAMHGF--VKE----SLELF-TEMQIVGIT--------------------PDEITFLGLLSACAH 310 (440)
Q Consensus 260 --~~~~~~~~~l~~~~~~~~~--~~~----a~~~~-~~m~~~~~~--------------------p~~~~~~~l~~~~~~ 310 (440)
..+...|-.+..++.-.-. ++. ...+| .+....+.- .+..+|..++..|.+
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 1122233322222111000 000 00011 111111111 122233333333322
Q ss_pred --------CCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC--CCCccHhHHHHHHHHHHhcCC
Q 039362 311 --------GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM--PLEPTASMLGSLLTGCMNHGK 380 (440)
Q Consensus 311 --------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~g~ 380 (440)
..+...|+..+...++.. ..+..+|+.|.-. ...|.+.-|.-.|-+- ..+....+|..+...+.+..+
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEeccc
Confidence 112234555555555432 1233444444333 4445555555555443 222345667777777777778
Q ss_pred hhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHH--HHhcCCccCCC
Q 039362 381 LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA--METRGVKKYPG 435 (440)
Q Consensus 381 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~ 435 (440)
++.|...|.+...++|.+...|...+......|+.-++..+|.. ....+-.+.++
T Consensus 866 ~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~ 922 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKK 922 (1238)
T ss_pred HHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccch
Confidence 88888888888888888877777777777777777777777755 33333334443
No 110
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.91 E-value=1.1e-06 Score=82.48 Aligned_cols=411 Identities=12% Similarity=-0.019 Sum_probs=246.2
Q ss_pred ChhhHHHHhhhcCCCC---hHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHH
Q 039362 12 NIDYSCKVLSHLSNPR---IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88 (440)
Q Consensus 12 ~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 88 (440)
+...|...|=+..+-| ...|..|...|....+...|...|+...+.+ ..+......+...|++..+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 3555555554433322 3478889988988888899999999988753 34566788889999999999999998444
Q ss_pred HHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHhhCCCC---CchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhh-H
Q 039362 89 IAKTGYE-SDLFISNSLIHMYGSCGDIVYAREVFDGMPT---KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVS-W 163 (440)
Q Consensus 89 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~ 163 (440)
..+..+. .-...+....-.|...++..+|..-|+.... .|...|..+..+|..+|++..|.++|.++..-++.. |
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 4333211 0111222244457778899999999987765 366688899999999999999999998876533322 2
Q ss_pred H--HHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCChHHHHHHHH-------HHHHcCCCC
Q 039362 164 S--ALIDGYVKCGDYKEALVIFEEMRDVG------SKANEVTLVSVLCACAHLGALDQGRMMLR-------YMIDKGLSL 228 (440)
Q Consensus 164 ~--~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~~~~~~ 228 (440)
. ......+..|++.+++..+....... ..--..++..+...+...|-..++..+++ -........
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 2 22334567899999998887764421 01111222222222333333333333333 222222222
Q ss_pred chhhHHHHHHHH-------------------H----hcCCH---H---HHHHHHhhhhhcCCchhhHHHHHHHHHh----
Q 039362 229 TLPLQTSLIDMY-------------------A----KCGAI---K---EALIVFHGVEKHQSDVLIWNAMIGGLAM---- 275 (440)
Q Consensus 229 ~~~~~~~l~~~~-------------------~----~~g~~---~---~A~~~~~~~~~~~~~~~~~~~l~~~~~~---- 275 (440)
+...|..+..++ . ..+.. + -+.+.+-.-.+...+..+|..++..|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 222222222111 1 11111 1 0111111111112234556556555443
Q ss_pred c----CChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 039362 276 H----GFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTE 351 (440)
Q Consensus 276 ~----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (440)
. .+...|+..++..++.. ..+..+|+.|.- ....|++.-+...|-+-.... +....+|..+.-.+....+++-
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGV-lsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGV-LSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHH-hhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHH
Confidence 1 22346777888777653 345556666554 466678877777776655543 3356678888888999999999
Q ss_pred HHHHHhcC-CCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----CCchHHHHHHHHHhccChHHHHHHHHH
Q 039362 352 AYEFICQM-PLEPTA-SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD-----HDGRYVGLSNVYAIFKRWDEARTTREA 424 (440)
Q Consensus 352 a~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 424 (440)
|...|... .+.|+. ..|..........|+.-++..+|...-+.... .-..|..........|+.++-....++
T Consensus 869 A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred hhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 99999998 667744 56766666666789888888888885444322 222345555566677887776665554
Q ss_pred HH
Q 039362 425 ME 426 (440)
Q Consensus 425 ~~ 426 (440)
+.
T Consensus 949 i~ 950 (1238)
T KOG1127|consen 949 IS 950 (1238)
T ss_pred hh
Confidence 43
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.91 E-value=3.5e-05 Score=67.91 Aligned_cols=396 Identities=9% Similarity=0.067 Sum_probs=225.8
Q ss_pred CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 039362 25 NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSL 104 (440)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 104 (440)
+-|+.+|+.||+-+... ..+++.+.++++... .+-.+..|..-|..-...++++.+.++|.+.+.... +...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 56889999999977666 999999999999874 344577899999999999999999999999987643 46666666
Q ss_pred HHHHHh-cCCHHHH----HHHhhCCC------CCchhhHHHHHHH---------HHhcCChHHHHHHHhhCCC-C-----
Q 039362 105 IHMYGS-CGDIVYA----REVFDGMP------TKMSVSWNSMLDG---------YAKCGEMNMARQVFELMPE-R----- 158 (440)
Q Consensus 105 ~~~~~~-~g~~~~a----~~~~~~~~------~~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~-~----- 158 (440)
++.-.+ .|+...+ .+.|+-.. -.+...|+..+.- +..+.+++..++++.++.. |
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 653332 2333332 22222111 1233345544433 3555677888888988764 1
Q ss_pred ----chhhHHHHHHHH-------HhcCCHHHHHHHHHHHHh--cCCCCCHHH---------------HHHHHHHHHhcCC
Q 039362 159 ----NVVSWSALIDGY-------VKCGDYKEALVIFEEMRD--VGSKANEVT---------------LVSVLCACAHLGA 210 (440)
Q Consensus 159 ----~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~l~~~~~~~~~ 210 (440)
|-..|..=++.. -+...+-.|.++++++.. .|......+ +..+|. +-+.+-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~-wEksNp 251 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK-WEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH-HHhcCC
Confidence 222332222211 123356667777776632 232211111 222222 111111
Q ss_pred h---------HHHHHHHHHHHH-cCCCCchhhHHHH-------HHHHHhcCC-------HHHHHHHHhhhhhc--CCchh
Q 039362 211 L---------DQGRMMLRYMID-KGLSLTLPLQTSL-------IDMYAKCGA-------IKEALIVFHGVEKH--QSDVL 264 (440)
Q Consensus 211 ~---------~~a~~~~~~~~~-~~~~~~~~~~~~l-------~~~~~~~g~-------~~~A~~~~~~~~~~--~~~~~ 264 (440)
+ ....-++++.+. .+..| .+|--. ...+...|+ .+++..+++..... ..+..
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~p--eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~ 329 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHP--EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL 329 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111122222221 12222 222111 122333333 33444555544322 12223
Q ss_pred hHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCC-CcchHHHHH
Q 039362 265 IWNAMIGGLAMH---GFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP-KSEHYACMV 340 (440)
Q Consensus 265 ~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 340 (440)
+|..+...--.. ...+....+++++...-..--..+|..++..-.+..-.+.|..+|.++.+.+..+ ++.++++++
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM 409 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 333332211111 1245556666665543222223467777777777788888888888888876666 566667777
Q ss_pred HHHHhcCCHHHHHHHHhcC-CCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CC--CCchHHHHHHHHHhccCh
Q 039362 341 DALSRAGQVTEAYEFICQM-PLEPTA-SMLGSLLTGCMNHGKLDLAEIVGKKLVELQ-PD--HDGRYVGLSNVYAIFKRW 415 (440)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~ 415 (440)
..|+ .++.+-|.++|+-- ..-+|. .-....+..+...++-..+..+|++++... +. ...+|..++.--..-|+.
T Consensus 410 Ey~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 410 EYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 6554 56778888888765 333333 444566677778888888888888888773 21 224788888888888888
Q ss_pred HHHHHHHHHHHhc
Q 039362 416 DEARTTREAMETR 428 (440)
Q Consensus 416 ~~A~~~~~~~~~~ 428 (440)
..+.++-+++...
T Consensus 489 ~si~~lekR~~~a 501 (656)
T KOG1914|consen 489 NSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHHHh
Confidence 8888887776554
No 112
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.7e-05 Score=75.01 Aligned_cols=341 Identities=15% Similarity=0.115 Sum_probs=251.3
Q ss_pred CChHHHHHHHHHHHccCChhhHHHHHHHHHHcCC--CCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHH
Q 039362 26 PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGV--SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNS 103 (440)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 103 (440)
.|+..-..-..++...+-+.+-++++++..-... .-+...-+.|+-. +-.-+..++.+..+++-..+. |+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyDa-~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYDA-PD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCCc-hh------
Confidence 4455555667889999999999999999864321 1122223444433 334566777888877755432 22
Q ss_pred HHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 039362 104 LIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIF 183 (440)
Q Consensus 104 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 183 (440)
+...+...+-+++|..+|++..- +....+.|+. .-+.++.|.+.-++..+ +..|+.+..+-.+.|...+|++-|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~-n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM-NVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc-cHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHH
Confidence 34456677889999999987643 2333333333 45678888888777764 567999999999999999998877
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCch
Q 039362 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV 263 (440)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 263 (440)
-+. -|+..|..++....+.|.+++-.+++....+..-.|.. -..|+-+|++.++..+-.+++. .||.
T Consensus 1128 ika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-----gpN~ 1194 (1666)
T KOG0985|consen 1128 IKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-----GPNV 1194 (1666)
T ss_pred Hhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-----CCCc
Confidence 542 35678999999999999999999999888877655543 4678999999999888776653 7888
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 039362 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDAL 343 (440)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (440)
.....+..-|...|.++.|.-++... ..|..|...+...|+++.|...-+++ .+..+|..+-.+|
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFAC 1259 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHH
Confidence 88888889999999999888777643 34677777778888888887654433 3667899888888
Q ss_pred HhcCCHHHHHHHHhcCCC--CccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 039362 344 SRAGQVTEAYEFICQMPL--EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412 (440)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (440)
...+.+.-|. -.|+ -....-+..++.-|...|-+++.+.+++..+.+...+...|+.++..|.+-
T Consensus 1260 vd~~EFrlAQ----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1260 VDKEEFRLAQ----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hchhhhhHHH----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 8877665432 2243 335566788999999999999999999999988888888999999888765
No 113
>PLN02789 farnesyltranstransferase
Probab=98.89 E-value=4.9e-06 Score=71.51 Aligned_cols=231 Identities=10% Similarity=0.011 Sum_probs=112.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH-
Q 039362 169 GYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG-ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI- 246 (440)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~- 246 (440)
.+...++.++|+.++.+++... +-+...+..-..++...| ++++++..++.+.+.+ +.+..+|..-..++.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 3444455556666655555442 112223333333333444 3456666666655554 44444454444444444432
Q ss_pred -HHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcC---CC----hHHH
Q 039362 247 -KEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG---GL----VMEA 317 (440)
Q Consensus 247 -~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---~~----~~~a 317 (440)
++++.+++++.+..| +..+|+...-.+...|+++++++.+.++.+.+ +.|...|+.....+.+. |. .++.
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHH
Confidence 445555555554443 45556655555556666666666666666554 22333444443333332 11 1344
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHhc----CCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcC------------
Q 039362 318 WYFFKSLGKRGMVPKSEHYACMVDALSRA----GQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHG------------ 379 (440)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g------------ 379 (440)
..+..+++... +-+...|+.+...+... ++..+|.+++.+. ...| +...+..|+..|....
T Consensus 203 l~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 203 LKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 55554555432 12455566555555552 2334565555554 3233 3344455555554321
Q ss_pred ------ChhHHHHHHHHHHhcCCCCCchHH
Q 039362 380 ------KLDLAEIVGKKLVELQPDHDGRYV 403 (440)
Q Consensus 380 ------~~~~a~~~~~~~~~~~~~~~~~~~ 403 (440)
..++|..+++.+.+.+|-....|.
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred cccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 336677777777555555444443
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=4.2e-07 Score=75.73 Aligned_cols=183 Identities=15% Similarity=0.060 Sum_probs=130.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch---hhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchh----h
Q 039362 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTL---PLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL----I 265 (440)
Q Consensus 193 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~ 265 (440)
.....+......+...|+++.|...++++.+.. +.+. ..+..+..++...|++++|...++++.+..|+.. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345677778888999999999999999998765 3332 4667889999999999999999999988776433 3
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCccHh-hHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchH
Q 039362 266 WNAMIGGLAMH--------GFVKESLELFTEMQIVGITPDEI-TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHY 336 (440)
Q Consensus 266 ~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 336 (440)
+..+..++... |++++|.+.++.+... .|+.. ....+.... . .. .... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~------~~~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LR------NRLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HH------HHHH--------HHH
Confidence 55555666654 7889999999999876 44432 222221110 0 00 0000 011
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcC-CCCc----cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039362 337 ACMVDALSRAGQVTEAYEFICQM-PLEP----TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQP 396 (440)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 396 (440)
..+...|.+.|++++|...+++. ...| ....+..++.++...|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24667788999999999999887 3223 346788889999999999999999888877655
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.7e-06 Score=68.96 Aligned_cols=157 Identities=19% Similarity=0.200 Sum_probs=74.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHc----
Q 039362 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH---- 310 (440)
Q Consensus 235 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---- 310 (440)
.-+..|+..|++++|++..+... +....-.=...+.+..+++-|.+.+++|.+- .+..|.+.|..++.+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGE----NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 33445555566666665555422 1112222223334445555566666665542 234455545444432
Q ss_pred CCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC--CCCccHhHHHHHHHHHHhcCCh-hHHHHH
Q 039362 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM--PLEPTASMLGSLLTGCMNHGKL-DLAEIV 387 (440)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~-~~a~~~ 387 (440)
.+....|.-+|+++.++ ..|+..+.+....++...|++++|..++++. +-..++.++..++......|.. +-..+.
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 23455555555555542 3455555555555555555666665555555 2223444444444444444433 223344
Q ss_pred HHHHHhcCCCCC
Q 039362 388 GKKLVELQPDHD 399 (440)
Q Consensus 388 ~~~~~~~~~~~~ 399 (440)
+.++....|..+
T Consensus 265 l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 265 LSQLKLSHPEHP 276 (299)
T ss_pred HHHHHhcCCcch
Confidence 455554555443
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.86 E-value=3.7e-07 Score=82.69 Aligned_cols=236 Identities=14% Similarity=0.064 Sum_probs=181.5
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CchhhHHHHHHHHHh
Q 039362 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE--RNVVSWSALIDGYVK 172 (440)
Q Consensus 95 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~ 172 (440)
+|--..-..+...+...|-...|..+|+++ ..|...+.+|+..|+..+|..+..+..+ |+...|..+.+....
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 344445566778888999999999999876 3577788899999999999988877654 677888888888777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 039362 173 CGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252 (440)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 252 (440)
..-+++|.++.+..... .-..+.....+.+++.++.+.++.-.+.+ +.-..+|-.+..+..+.++++.|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 77788888887764322 11222223345789999999999888877 67788888899999999999999999
Q ss_pred HhhhhhcCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcC-CC
Q 039362 253 FHGVEKHQSD-VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG-MV 330 (440)
Q Consensus 253 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 330 (440)
|.......|| ...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++.... ..
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 9999888885 6789999999999999999999999998877 4444566666667788999999999999887761 12
Q ss_pred CCcchHHHHHHHHH
Q 039362 331 PKSEHYACMVDALS 344 (440)
Q Consensus 331 ~~~~~~~~l~~~~~ 344 (440)
.|..+...++....
T Consensus 621 ~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 621 KDDEVLLIIVRTVL 634 (777)
T ss_pred ccchhhHHHHHHHH
Confidence 25555555554443
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.85 E-value=8.7e-08 Score=72.36 Aligned_cols=105 Identities=12% Similarity=-0.090 Sum_probs=56.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCC
Q 039362 303 GLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGK 380 (440)
Q Consensus 303 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 380 (440)
.+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...|++. ...| +...+..+..++...|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 34445555566666666666555532 124444555555555566666666665555 3333 33455555555555566
Q ss_pred hhHHHHHHHHHHhcCCCCCchHHHHHHH
Q 039362 381 LDLAEIVGKKLVELQPDHDGRYVGLSNV 408 (440)
Q Consensus 381 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 408 (440)
+++|+..|+++++..|.++..+...+.+
T Consensus 108 ~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 108 PGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 6666666666666555555555444443
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=6.2e-07 Score=71.44 Aligned_cols=163 Identities=14% Similarity=0.052 Sum_probs=117.9
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcC-CchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHH
Q 039362 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ-SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305 (440)
Q Consensus 227 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 305 (440)
+.|..+ ..+...+...|+-+....+........ .+.......+....+.|++..|+..+.+..... ++|...|+.+.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 334444 666677777787777777777754333 355566667888888888888888888887654 77778888888
Q ss_pred HHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCC--ccHhHHHHHHHHHHhcCChhH
Q 039362 306 SACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE--PTASMLGSLLTGCMNHGKLDL 383 (440)
Q Consensus 306 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~ 383 (440)
-+|.+.|+.+.|..-|.+..+... -+...++.+.-.|.-.|+++.|..++...-.. -|..+-..+.......|++++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 888888888888888888887521 24556777777788888888888888877222 255666777777778888888
Q ss_pred HHHHHHHHH
Q 039362 384 AEIVGKKLV 392 (440)
Q Consensus 384 a~~~~~~~~ 392 (440)
|..+..+-.
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 877766543
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.84 E-value=6.5e-07 Score=71.52 Aligned_cols=118 Identities=11% Similarity=0.065 Sum_probs=68.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHH-HhcCC--hHHHH
Q 039362 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGL-AMHGF--VKESL 283 (440)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~-~~~~~--~~~a~ 283 (440)
.++.+++...++..++.+ +.+...|..+...|...|++++|...|++.....| +...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 444455555555555554 55566666666666666666666666666665544 344555555542 44454 36666
Q ss_pred HHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 039362 284 ELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327 (440)
Q Consensus 284 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 327 (440)
+++++..+.+ +.+...+..+...+...|++++|+..|+++.+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666553 334455555666666666666666666666654
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.83 E-value=2.8e-06 Score=81.49 Aligned_cols=235 Identities=9% Similarity=0.021 Sum_probs=145.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC--Cc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039362 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPE--RN-VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204 (440)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (440)
+...+..|+..+...+++++|.++.+...+ |+ ...|..+...+.+.++..++.-+ . ++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N---------------LIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhhh
Confidence 445667777777777777777777765543 32 23344444455555554444333 2 2222
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHH
Q 039362 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESL 283 (440)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 283 (440)
.....++.-...+...+.+. ..+...+..++.+|-+.|+.++|..+|+++.+..| |+...|.+.-.|... +.++|.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 22333343333444444442 33344667788888888888888888888887766 567777787777777 888888
Q ss_pred HHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCc
Q 039362 284 ELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP 363 (440)
Q Consensus 284 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p 363 (440)
+++.+.... +...+++..+.++|.++..... .+...+..+.+..... .+..-
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~ki~~~------------~~~~~ 221 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERKVLGH------------REFTR 221 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHHHHhh------------hccch
Confidence 887776653 4455677777777877777431 1222332222222211 11222
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 039362 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410 (440)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (440)
-..++..+...|...+++++++.+++.+++.+|.|..+...++.+|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 34555566677778888999999999999999888888888888876
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.83 E-value=2.2e-06 Score=83.23 Aligned_cols=165 Identities=13% Similarity=0.047 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 039362 163 WSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242 (440)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 242 (440)
|.++++.-..-|.-+...++|+++.+.. -.-..|..|...|.+.+.+++|.++++.|.+.- .....+|..++..+.+
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhc
Confidence 4444444444444444444444444321 112233444444445555555555555544432 2344444445555555
Q ss_pred cCCHHHHHHHHhhhhhcCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHH
Q 039362 243 CGAIKEALIVFHGVEKHQS---DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319 (440)
Q Consensus 243 ~g~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 319 (440)
.++-+.|..++.++.+.-| .+......+..-.+.|+.+++..+|+...... +-....|+..++.-.++|+.+.+..
T Consensus 1577 ~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHH
Confidence 5554555555544443322 12223333333444455555555555444331 2223344555555555555555555
Q ss_pred HHHHHhhcCCCC
Q 039362 320 FFKSLGKRGMVP 331 (440)
Q Consensus 320 ~~~~~~~~~~~~ 331 (440)
+|++++..++.|
T Consensus 1656 lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1656 LFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHhcCCCh
Confidence 555555444333
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.78 E-value=4.3e-07 Score=68.56 Aligned_cols=99 Identities=11% Similarity=-0.093 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 039362 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241 (440)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 241 (440)
.+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+...+.+ +.+...+..+..++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34444555555555665655555555443 3344455555555555555555555555555544 445555555555555
Q ss_pred hcCCHHHHHHHHhhhhhcCCc
Q 039362 242 KCGAIKEALIVFHGVEKHQSD 262 (440)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~~ 262 (440)
..|++++|+..|+......|+
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 555555555555555544443
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=2.4e-06 Score=67.58 Aligned_cols=196 Identities=13% Similarity=0.113 Sum_probs=109.9
Q ss_pred cCChHHHHHHHHHHHHc---C-CCCch-hhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHH-HHHHHHhcCChHH
Q 039362 208 LGALDQGRMMLRYMIDK---G-LSLTL-PLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNA-MIGGLAMHGFVKE 281 (440)
Q Consensus 208 ~~~~~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~ 281 (440)
..+.++..+++..+... | ..++. .++..+.-+....|+.+.|..+++.+....|...-... -...+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 35667777777766532 2 22222 23445555556667777777777776655443222111 1222334567777
Q ss_pred HHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-C
Q 039362 282 SLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-P 360 (440)
Q Consensus 282 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~ 360 (440)
|+++++.+.+.. +.|..++.--+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++ -
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777776654 444455554444455556666666666666554 3446667777777777777777777777776 3
Q ss_pred CCc-cHhHHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCCchHHHH
Q 039362 361 LEP-TASMLGSLLTGCMN---HGKLDLAEIVGKKLVELQPDHDGRYVGL 405 (440)
Q Consensus 361 ~~p-~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l 405 (440)
+.| ++..+..+...+.- ..+...|.++|.+++++.|.+...+..+
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 344 33334444444332 2345666677777777766554444333
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=1.2e-05 Score=64.32 Aligned_cols=158 Identities=15% Similarity=0.055 Sum_probs=110.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcC-CchhhHHHHHHHHHhcC
Q 039362 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ-SDVLIWNAMIGGLAMHG 277 (440)
Q Consensus 199 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 277 (440)
..+...+...|+-+....+........ +.+......++....+.|++..|...+++..... +|...|+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 555566666677777666666654332 5555666667777778888888888888777654 36777888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHh
Q 039362 278 FVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357 (440)
Q Consensus 278 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (440)
+++.|..-|.+..+.. .-++..++.+...+.-.|+.+.|..++......+ .-|..+-..+.......|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888888887777653 3344566667666777788888888888777654 2255666677777778888888887766
Q ss_pred cC
Q 039362 358 QM 359 (440)
Q Consensus 358 ~~ 359 (440)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 55
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=7e-06 Score=65.58 Aligned_cols=151 Identities=13% Similarity=0.085 Sum_probs=90.7
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCh
Q 039362 136 LDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH----LGAL 211 (440)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 211 (440)
...|+..|++++|++..+... +......=+..+.+..+.+-|.+.+++|.+.. +..|.+-|..++.+ .+..
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhh
Confidence 344666677777777766632 33333333455566777777777777776532 44566655555543 2456
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCCh-HHHHHHHHHH
Q 039362 212 DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFV-KESLELFTEM 289 (440)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~-~~a~~~~~~m 289 (440)
.+|.-+|+++-++- +|++.+.+..+.++...|++++|..+++......+ ++.+...++..-...|.. +-..+.+.++
T Consensus 190 qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 190 QDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 77777777776543 67777777777777777777777777777765543 445555555444444444 3344555555
Q ss_pred HHc
Q 039362 290 QIV 292 (440)
Q Consensus 290 ~~~ 292 (440)
...
T Consensus 269 k~~ 271 (299)
T KOG3081|consen 269 KLS 271 (299)
T ss_pred Hhc
Confidence 543
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.73 E-value=2.7e-06 Score=80.64 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=67.8
Q ss_pred cHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccH-hHHHHHHH
Q 039362 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPK-SEHYACMVDALSRAGQVTEAYEFICQM-PLEPTA-SMLGSLLT 373 (440)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~-~~~~~l~~ 373 (440)
+...+..|.....+.|.+++|..+++.+.+. .|+ ......++..+.+.+++++|...+++. ...|+. .....+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 3444555555555555555555555555552 233 223344455555555555555555555 334433 33344445
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
++.+.|++++|..+|+++...+|+++.++..++.++...|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555544
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.69 E-value=2.5e-05 Score=75.14 Aligned_cols=57 Identities=7% Similarity=-0.004 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCc-chHHHHHHHhhchhcHHHHHH
Q 039362 26 PRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH-LTYPFLAKASGRLAKRELAVA 84 (440)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 84 (440)
.+...|..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+.+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~l 86 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNL 86 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhh
Confidence 44556666666666666666666666655543 2332 223333334444444444433
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=5.3e-06 Score=72.15 Aligned_cols=112 Identities=20% Similarity=0.143 Sum_probs=69.0
Q ss_pred HcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc-HhHHHHHHHHHHhcCChhHHHH
Q 039362 309 AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPT-ASMLGSLLTGCMNHGKLDLAEI 386 (440)
Q Consensus 309 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 386 (440)
...|.++.|+..++.+.... +-|+.......+.+.+.++.++|.+.++++ ...|+ ......+..++.+.|++.+|+.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34566677777777666542 223344445556666777777777777766 55555 3445556666777777777777
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHH
Q 039362 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421 (440)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 421 (440)
+++.....+|.++..|..|+.+|...|+..+|...
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 77777777777777776666666555554444433
No 129
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=5.7e-08 Score=52.15 Aligned_cols=32 Identities=41% Similarity=0.567 Sum_probs=19.5
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCC
Q 039362 93 GYESDLFISNSLIHMYGSCGDIVYAREVFDGM 124 (440)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 124 (440)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
No 130
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=4.6e-08 Score=52.54 Aligned_cols=32 Identities=31% Similarity=0.579 Sum_probs=14.5
Q ss_pred CCCccHhhHHHHHHHHHcCCChHHHHHHHHHH
Q 039362 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324 (440)
Q Consensus 293 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 324 (440)
|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.62 E-value=6e-07 Score=67.51 Aligned_cols=97 Identities=14% Similarity=0.062 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcC
Q 039362 302 LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHG 379 (440)
Q Consensus 302 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 379 (440)
..+...+...|++++|...++.+...+ +.+...+..+...+...|++++|...+++. ...| +...+..+...+...|
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 334444444555555555555544432 113334444444444555555555544444 2222 2334444444444555
Q ss_pred ChhHHHHHHHHHHhcCCCCC
Q 039362 380 KLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~ 399 (440)
++++|...++++.+.+|.+.
T Consensus 100 ~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 100 EPESALKALDLAIEICGENP 119 (135)
T ss_pred CHHHHHHHHHHHHHhccccc
Confidence 55555555555555544443
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.62 E-value=1.9e-05 Score=75.01 Aligned_cols=129 Identities=9% Similarity=0.101 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 039362 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN-EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (440)
...+..|.....+.|.+++|..+++...+. .|+ ......++.++.+.+++++|...+++..+.. +.+......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 344444444444444444444444444443 222 2233334444444444444444444444443 334444444444
Q ss_pred HHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039362 239 MYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGFVKESLELFTEMQI 291 (440)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 291 (440)
++...|++++|..+|+++....|+ ...+..+..++...|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444433332 33444444444444555555554444443
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=5.4e-05 Score=66.07 Aligned_cols=107 Identities=15% Similarity=0.052 Sum_probs=46.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCC-cchHHHHHHHHHhcCCHHHHH
Q 039362 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPK-SEHYACMVDALSRAGQVTEAY 353 (440)
Q Consensus 275 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 353 (440)
..|.+++|+..+..+.... +-|..........+.+.++.++|.+.++++... .|+ ......+.++|.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 3444455555555444331 222222333334444445555555555544443 232 222334444455555555555
Q ss_pred HHHhcC--CCCccHhHHHHHHHHHHhcCChhHH
Q 039362 354 EFICQM--PLEPTASMLGSLLTGCMNHGKLDLA 384 (440)
Q Consensus 354 ~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a 384 (440)
.+++.. ..+-|+..|..|..+|...|+..++
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 554444 2222344445555555555444433
No 134
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.55 E-value=1.1e-06 Score=65.22 Aligned_cols=95 Identities=9% Similarity=-0.059 Sum_probs=81.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 039362 335 HYACMVDALSRAGQVTEAYEFICQM-PLEPT-ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412 (440)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (440)
....+...+...|++++|.++|+-. .+.|. ..-|..|.-++...|++++|+..|.++..++|++|..+..++.++...
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3445566677899999999999988 56664 466788888899999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHhcC
Q 039362 413 KRWDEARTTREAMETRG 429 (440)
Q Consensus 413 g~~~~A~~~~~~~~~~~ 429 (440)
|+.+.|++.|+..+...
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999888765
No 135
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.54 E-value=0.00045 Score=59.93 Aligned_cols=414 Identities=13% Similarity=0.097 Sum_probs=224.1
Q ss_pred ccccccccCChhhHHHHhhhcCC---CCh------HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHH-
Q 039362 3 SFSALSYLGNIDYSCKVLSHLSN---PRI------FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA- 72 (440)
Q Consensus 3 ~~y~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 72 (440)
++|...+++++.+|.++|.++-. .+. ..-+.++++|... +.+.....+....+. .| ...|..+..+
T Consensus 12 Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L 87 (549)
T PF07079_consen 12 QGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKAL 87 (549)
T ss_pred hhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHH
Confidence 34566678999999999998852 222 2345666776543 445555555555543 24 3445555544
Q ss_pred -hhchhcHHHHHHHHHHHHHc--CCC------------CcHHHHHHHHHHHHhcCCHHHHHHHhhCCCC--------Cch
Q 039362 73 -SGRLAKRELAVAVHAQIAKT--GYE------------SDLFISNSLIHMYGSCGDIVYAREVFDGMPT--------KMS 129 (440)
Q Consensus 73 -~~~~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~ 129 (440)
+.+.+.+++|.+.+...... +.. +|...-+..++++...|.+.+++.+++++.+ -+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 35778899999888777654 221 1223335677888899999999998888753 366
Q ss_pred hhHHHHHHHHHhc--------CChHHHHHHHhh-------CCC----------CchhhHHHHHHHHHhc--CCHHHHHHH
Q 039362 130 VSWNSMLDGYAKC--------GEMNMARQVFEL-------MPE----------RNVVSWSALIDGYVKC--GDYKEALVI 182 (440)
Q Consensus 130 ~~~~~l~~~~~~~--------~~~~~a~~~~~~-------~~~----------~~~~~~~~l~~~~~~~--~~~~~a~~~ 182 (440)
.+|+.++-.+.++ ...+-+...++. +.. |.......++....-. .+..--.++
T Consensus 168 d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~ 247 (549)
T PF07079_consen 168 DMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQI 247 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHH
Confidence 6777644444322 111111111111 111 1111122222221111 112222233
Q ss_pred HHHHHhcCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CchhhHHHHHHHHHhcCCHHHHHHHHhhhh
Q 039362 183 FEEMRDVGSKANEVT-LVSVLCACAHLGALDQGRMMLRYMIDKGLS----LTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257 (440)
Q Consensus 183 ~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 257 (440)
++.....-+.|+... ...+...+.. +.+++..+-+.+....+. .-..++..++....+.++...|...+.-+.
T Consensus 248 l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 248 LENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333333334444332 2233333332 555555555555433211 113456666777777888888877777666
Q ss_pred hcCCchhhHHHH-------HHHHHh----cCChHHHHHHHHHHHHcCCCccHhhHHHH---HHHHHcCCC-hHHHHHHHH
Q 039362 258 KHQSDVLIWNAM-------IGGLAM----HGFVKESLELFTEMQIVGITPDEITFLGL---LSACAHGGL-VMEAWYFFK 322 (440)
Q Consensus 258 ~~~~~~~~~~~l-------~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l---~~~~~~~~~-~~~a~~~~~ 322 (440)
-.+|+...-..+ -...+. .-+...=+.+|+......+... .-...| ..-+.+.|. -++|.++++
T Consensus 326 ~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 326 ILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred hcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 556654322111 112221 1122333445555544332111 111112 222334454 788999999
Q ss_pred HHhhcCCCC-CcchHHHHH----HHHHhc---CCHHH---HHHHHhcCCCCc----cHhHHHHHHHH--HHhcCChhHHH
Q 039362 323 SLGKRGMVP-KSEHYACMV----DALSRA---GQVTE---AYEFICQMPLEP----TASMLGSLLTG--CMNHGKLDLAE 385 (440)
Q Consensus 323 ~~~~~~~~~-~~~~~~~l~----~~~~~~---~~~~~---a~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~ 385 (440)
.+.+- .| |..+-+.+. ..|... ..+.+ -...+++.|+.| +...-|.|..+ +..+|++.++.
T Consensus 405 ~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 405 LILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 88874 33 333333222 222221 12222 233344456666 34556666655 55799999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHH
Q 039362 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426 (440)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 426 (440)
-.-.-+.+..| ++.+|..++.++....++++|+.++..+.
T Consensus 483 ~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 483 LYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99999999999 78899999999999999999999997764
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=4.1e-05 Score=60.87 Aligned_cols=187 Identities=16% Similarity=0.158 Sum_probs=138.9
Q ss_pred cCCHHHHHHHHHHHHh---cC-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 039362 173 CGDYKEALVIFEEMRD---VG-SKANEVT-LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247 (440)
Q Consensus 173 ~~~~~~a~~~~~~~~~---~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 247 (440)
..+.++..+++.++.. .| ..++..+ |..+.-+....|+.+.|...++.+.+.- |.+..+...-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 4678889888888754 34 4555554 4455556677889999999999988775 656666555566667789999
Q ss_pred HHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhh
Q 039362 248 EALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326 (440)
Q Consensus 248 ~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 326 (440)
+|+++|+.+.+..| |..++-.-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999999987777 5666766677777778888888888887765 577888999999999999999999999999887
Q ss_pred cCCCC-CcchHHHHHHHHHhcC---CHHHHHHHHhcC-CCCc
Q 039362 327 RGMVP-KSEHYACMVDALSRAG---QVTEAYEFICQM-PLEP 363 (440)
Q Consensus 327 ~~~~~-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~-~~~p 363 (440)
. .| ++..+..+...+.-.| +.+-|.++|.+. ++.|
T Consensus 183 ~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 I--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred c--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 4 34 4444556666554444 456678888776 6566
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.54 E-value=2.4e-06 Score=74.91 Aligned_cols=120 Identities=19% Similarity=0.208 Sum_probs=83.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCC
Q 039362 303 GLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGK 380 (440)
Q Consensus 303 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 380 (440)
.|+..+...++++.|+.+++++.+.. |+ ....+++.+...++-.+|.+++++. ...| +...+......+.+.++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34444445566666666666666543 32 3334556666666666666666665 2233 45556666677888888
Q ss_pred hhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHH
Q 039362 381 LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426 (440)
Q Consensus 381 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 426 (440)
++.|+.+.+++.+..|.+..+|..|+.+|...|++++|+-.++.+.
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888888888888888888888888888888887765
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.51 E-value=7.6e-06 Score=61.49 Aligned_cols=90 Identities=10% Similarity=0.013 Sum_probs=39.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCCh
Q 039362 201 VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFV 279 (440)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 279 (440)
+...+...|++++|...++.+.+.+ +.+...+..+..++...|++++|...++...+..| +...+..+...+...|++
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCH
Confidence 3334444444444444444444433 33344444444444444444444444444433333 233333444444444444
Q ss_pred HHHHHHHHHHHH
Q 039362 280 KESLELFTEMQI 291 (440)
Q Consensus 280 ~~a~~~~~~m~~ 291 (440)
++|...|+...+
T Consensus 102 ~~A~~~~~~al~ 113 (135)
T TIGR02552 102 ESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 139
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.51 E-value=0.00067 Score=60.22 Aligned_cols=368 Identities=11% Similarity=0.070 Sum_probs=216.6
Q ss_pred CCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCC--CchhhHHHHHH
Q 039362 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT--KMSVSWNSMLD 137 (440)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~ 137 (440)
+-|..+|..||+-+... .++++.+.++++... ++-....|..-+..-.+..+++..+.+|.+... -+...|...+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 55788999999987666 999999999999875 344677889999999999999999999988764 35566666655
Q ss_pred HHHh-cCChHHH----HHHHhhCCC------CchhhHHHHHHH---------HHhcCCHHHHHHHHHHHHhcCCCC----
Q 039362 138 GYAK-CGEMNMA----RQVFELMPE------RNVVSWSALIDG---------YVKCGDYKEALVIFEEMRDVGSKA---- 193 (440)
Q Consensus 138 ~~~~-~~~~~~a----~~~~~~~~~------~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~---- 193 (440)
---+ .|+...+ .+.|+-... .+...|+..+.- +..+.+.+.+.++|+++....+.-
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 4322 2333332 222222211 233345544432 334456677788888876542111
Q ss_pred --CHHHHHHHHHHH-------HhcCChHHHHHHHHHHHH--cCCCCchh---------------hHHHHHHHHHhcC---
Q 039362 194 --NEVTLVSVLCAC-------AHLGALDQGRMMLRYMID--KGLSLTLP---------------LQTSLIDMYAKCG--- 244 (440)
Q Consensus 194 --~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~l~~~~~~~g--- 244 (440)
|-..|..-++.. -+...+..|.++++++.. .|+..... .|..+|.-=...+
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 111222111111 123456677777777643 22211111 1222222111111
Q ss_pred ---C--HHHHHHHHhhhhhc---CCchhh-HH----HHHHHHHhcCC-------hHHHHHHHHHHHHcCCCccHhhHHHH
Q 039362 245 ---A--IKEALIVFHGVEKH---QSDVLI-WN----AMIGGLAMHGF-------VKESLELFTEMQIVGITPDEITFLGL 304 (440)
Q Consensus 245 ---~--~~~A~~~~~~~~~~---~~~~~~-~~----~l~~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~~~~~~l 304 (440)
. .....-.++..... .|++.. +. ..-..+...|+ .+++..+++.....-..-+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111112221111 121110 00 01112222333 35566666665543223333344333
Q ss_pred HHHHH---cCCChHHHHHHHHHHhhc-CCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC---CCCc-cHhHHHHHHHHHH
Q 039362 305 LSACA---HGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQM---PLEP-TASMLGSLLTGCM 376 (440)
Q Consensus 305 ~~~~~---~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~p-~~~~~~~l~~~~~ 376 (440)
.+.-. ..+..+....+++++... ...| ..+|..+++.-.+..-+..|..+|.++ +..+ ++.+..+++.-+
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~- 412 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY- 412 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-
Confidence 32211 112366677778877765 3333 456788888888999999999999998 3344 556667777655
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCCc
Q 039362 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431 (440)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 431 (440)
..+|.+.|.++|+-.+...++++..-...+..+...|+-..|+.+|++.+..+++
T Consensus 413 cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 413 CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 5778999999999999999999998899999999999999999999999988554
No 140
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.4e-06 Score=70.88 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=104.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHH-------------
Q 039362 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYAC------------- 338 (440)
Q Consensus 272 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------- 338 (440)
.+...|++++|...-....+.. ..+......-..++...++.+.+...|++.+..+ |+...-..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHh
Confidence 4556678888777766665442 1222222111223345677788888888777653 44332211
Q ss_pred HHHHHHhcCCHHHHHHHHhcC-CCCc-----cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 039362 339 MVDALSRAGQVTEAYEFICQM-PLEP-----TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412 (440)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~-~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (440)
-..-..+.|++..|.+.+.+. ++.| +...|.....+..+.|+..+|+.-.+.+..++|.-...+..-+.++...
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 122345778888888888887 4444 4455666666777888888898888888888888777788888888888
Q ss_pred cChHHHHHHHHHHHhcCCcc
Q 039362 413 KRWDEARTTREAMETRGVKK 432 (440)
Q Consensus 413 g~~~~A~~~~~~~~~~~~~~ 432 (440)
++|++|.+-+++..+.....
T Consensus 335 e~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred HHHHHHHHHHHHHHhhcccc
Confidence 88888888888887765443
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.49 E-value=0.0012 Score=62.20 Aligned_cols=406 Identities=14% Similarity=0.115 Sum_probs=226.4
Q ss_pred CChhhHHHHhhhcC--CCChHHHHHHHHH--HHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHH
Q 039362 11 GNIDYSCKVLSHLS--NPRIFYWNTVIRG--YSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVH 86 (440)
Q Consensus 11 g~~~~A~~~~~~~~--~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 86 (440)
+++..|....+++. .||.. |...+.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 67777777777665 34432 3333333 56788888888888877655433 7777888888888888899999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhcCCHHH----HHHHhhCCCCCchhhHHHHHHHHHhc-CC---------hHHHHHHH
Q 039362 87 AQIAKTGYESDLFISNSLIHMYGSCGDIVY----AREVFDGMPTKMSVSWNSMLDGYAKC-GE---------MNMARQVF 152 (440)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~l~~~~~~~-~~---------~~~a~~~~ 152 (440)
++..+.. |+......+..+|.+.+++.+ |.++++..+++--.-|+ +++.+.+. .. ..-|.+.+
T Consensus 101 e~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 101 ERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHHHH
Confidence 8887753 457777777778888776554 66677766554443443 33333221 11 22344555
Q ss_pred hhCCCCc--hhh---HHHHHHHHHhcCCHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 039362 153 ELMPERN--VVS---WSALIDGYVKCGDYKEALVIFE-EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL 226 (440)
Q Consensus 153 ~~~~~~~--~~~---~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 226 (440)
+.+.+.+ ..+ ...-...+-..|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++...+
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~- 256 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG- 256 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC-
Confidence 5554422 111 1111233445777888888883 33333333344444556666777788888888888888776
Q ss_pred CCchhhHHHHHHHHH----------------hcCCHHHHHHHHhhhhhcCCchhhHHHHHHHH---HhcCChHHHHHHHH
Q 039362 227 SLTLPLQTSLIDMYA----------------KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL---AMHGFVKESLELFT 287 (440)
Q Consensus 227 ~~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~ 287 (440)
+.| |...+..+. ..+..+...+...+..+. .....|-+-+.+. ...|+.+++...|-
T Consensus 257 ~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~-~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~ 332 (932)
T KOG2053|consen 257 NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGS-KSRGPYLARLELDKRYKLIGDSEEMLSYYF 332 (932)
T ss_pred Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcc-cccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence 333 222222111 112222333333332221 0111222222222 23466666554443
Q ss_pred HHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcc----h---HHHHHHHHHhcCC-----HHHHHHH
Q 039362 288 EMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSE----H---YACMVDALSRAGQ-----VTEAYEF 355 (440)
Q Consensus 288 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~---~~~l~~~~~~~~~-----~~~a~~~ 355 (440)
+ +.|-.| .+..=+..|...=..++-..++...... .++.. . +...+..-.-.|. .+.-..+
T Consensus 333 ~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~ 405 (932)
T KOG2053|consen 333 K--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAY 405 (932)
T ss_pred H--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence 3 223233 2233333344333444555555555443 12221 0 2222232233342 1222333
Q ss_pred HhcC------C------CCccH---------hHHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 039362 356 ICQM------P------LEPTA---------SMLGSLLTGCMNHGKL---DLAEIVGKKLVELQPDHDGRYVGLSNVYAI 411 (440)
Q Consensus 356 ~~~~------~------~~p~~---------~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (440)
+.+. + .-|.. -+.+.|+..+.+.++. -+|+-+++......|.|..+-..++..|.-
T Consensus 406 ~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~ 485 (932)
T KOG2053|consen 406 VRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSY 485 (932)
T ss_pred HHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 3221 1 12211 2345667777777764 578888899889999999999999999999
Q ss_pred ccChHHHHHHHHHHHhcCCccC
Q 039362 412 FKRWDEARTTREAMETRGVKKY 433 (440)
Q Consensus 412 ~g~~~~A~~~~~~~~~~~~~~~ 433 (440)
.|-+..|.++++.+--++++.+
T Consensus 486 lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 486 LGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred hcCChhHHHHHHhcchHHhhhc
Confidence 9999999999998876666544
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.44 E-value=1.6e-05 Score=69.84 Aligned_cols=123 Identities=13% Similarity=0.124 Sum_probs=72.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 039362 133 NSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD 212 (440)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 212 (440)
..|+..+...++++.|+++|+++.+.++.....++..+...++-.+|.+++++..... +.+...+..-...+.+.++++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 3445555555666666666666666555555556666666666666666666665442 334444444455556666666
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhh
Q 039362 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257 (440)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 257 (440)
.|..+.+++.+.. |.+-.+|..|..+|...|+++.|+..+..++
T Consensus 252 lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666554 4445566666666666666666666665554
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.41 E-value=3.7e-05 Score=58.33 Aligned_cols=124 Identities=13% Similarity=0.140 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--hhhHHHHH
Q 039362 163 WSALIDGYVKCGDYKEALVIFEEMRDVGSKAN---EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT--LPLQTSLI 237 (440)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 237 (440)
|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+......+. ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33333333 3556666666666665542 112 12222334455556666666666666665441121 11233345
Q ss_pred HHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 039362 238 DMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288 (440)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 288 (440)
.++...|++++|+..++.+.........+......+.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555666666655554432222334444455555555555555555543
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.39 E-value=2.9e-05 Score=58.92 Aligned_cols=85 Identities=21% Similarity=0.078 Sum_probs=33.7
Q ss_pred HHHHcCCChHHHHHHHHHHhhcCCCCC--cchHHHHHHHHHhcCCHHHHHHHHhcCC-CCccHhHHHHHHHHHHhcCChh
Q 039362 306 SACAHGGLVMEAWYFFKSLGKRGMVPK--SEHYACMVDALSRAGQVTEAYEFICQMP-LEPTASMLGSLLTGCMNHGKLD 382 (440)
Q Consensus 306 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~ 382 (440)
..+...|++++|...|+.+......|+ ......+...+...|++++|+..++... .......+......+...|+++
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHH
Confidence 344444555555555555544331111 0112223344444444444444444331 1112223333344444444444
Q ss_pred HHHHHHHH
Q 039362 383 LAEIVGKK 390 (440)
Q Consensus 383 ~a~~~~~~ 390 (440)
+|...|++
T Consensus 136 ~A~~~y~~ 143 (145)
T PF09976_consen 136 EARAAYQK 143 (145)
T ss_pred HHHHHHHH
Confidence 44444443
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.35 E-value=6e-06 Score=57.62 Aligned_cols=94 Identities=23% Similarity=0.276 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcC-CCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc
Q 039362 336 YACMVDALSRAGQVTEAYEFICQM-PLEPT-ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413 (440)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 413 (440)
+..+...+...|++++|...+++. ...|+ ...+..+...+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888876 44443 3667777888888899999999999999998888888889999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 039362 414 RWDEARTTREAMETRG 429 (440)
Q Consensus 414 ~~~~A~~~~~~~~~~~ 429 (440)
++++|...+++..+.+
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998877644
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.35 E-value=3.5e-07 Score=61.98 Aligned_cols=78 Identities=21% Similarity=0.298 Sum_probs=45.2
Q ss_pred cCCHHHHHHHHhcC-CCCc---cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHH
Q 039362 346 AGQVTEAYEFICQM-PLEP---TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421 (440)
Q Consensus 346 ~~~~~~a~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 421 (440)
.|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.+......++.++.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666665 2222 334444566666666777777666666 555555555555556667777777777766
Q ss_pred HHH
Q 039362 422 REA 424 (440)
Q Consensus 422 ~~~ 424 (440)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.35 E-value=6.5e-06 Score=60.28 Aligned_cols=59 Identities=17% Similarity=0.090 Sum_probs=27.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCC---CchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDH---DGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 370 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
.+..++.+.|+++.|...++.+....|.+ +.++..++.++...|++++|...++++.+.
T Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 44 WLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34444444444444555555444444332 223444444444445555555554444443
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.34 E-value=1.5e-06 Score=56.36 Aligned_cols=66 Identities=21% Similarity=0.191 Sum_probs=60.3
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc-ChHHHHHHHHHHHhcC
Q 039362 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK-RWDEARTTREAMETRG 429 (440)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 429 (440)
++.+|..+...+...|++++|+..|+++++.+|.++.++..++.+|...| ++++|.+.+++.++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45778889999999999999999999999999999999999999999999 7999999999887653
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.31 E-value=1.3e-06 Score=47.74 Aligned_cols=34 Identities=35% Similarity=0.661 Sum_probs=29.7
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCc
Q 039362 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH 63 (440)
Q Consensus 30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 63 (440)
+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888999999999999999999999988888873
No 150
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.29 E-value=0.0017 Score=55.33 Aligned_cols=251 Identities=16% Similarity=0.169 Sum_probs=143.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 039362 171 VKCGDYKEALVIFEEMRDVGSKANEVT--LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248 (440)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 248 (440)
.-.|+++.|.+-|+.|.. .|.... +..|.-...+.|+.+.|..+-+..-..- +.-.-.....+...+..|+|+.
T Consensus 131 l~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 345777777777777764 222211 1222222345677777777666665543 3334455667777777777777
Q ss_pred HHHHHhhhhhc---CCchhh--HHHHHHHHH---hcCChHHHHHHHHHHHHcCCCccHh-hHHHHHHHHHcCCChHHHHH
Q 039362 249 ALIVFHGVEKH---QSDVLI--WNAMIGGLA---MHGFVKESLELFTEMQIVGITPDEI-TFLGLLSACAHGGLVMEAWY 319 (440)
Q Consensus 249 A~~~~~~~~~~---~~~~~~--~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~ 319 (440)
|+++++.-... .++..- --.|+.+-. -..+...|...-.+..+ +.||.. .-.....++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 77777665432 333221 112222111 11234445554444433 355543 23334566778888888888
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC----CCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039362 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM----PLEPTA-SMLGSLLTGCMNHGKLDLAEIVGKKLVEL 394 (440)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 394 (440)
+++.+-+.. |.+.++ ..|.+..--+.++.-+++. .++||. .....+..+....|++..|..--+.+...
T Consensus 285 ilE~aWK~e--PHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKAE--PHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhcC--CChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 888887764 443333 2333333333444444433 455544 55666777777888888888888887777
Q ss_pred CCCCCchHHHHHHHHHhc-cChHHHHHHHHHHHhcCCccCCCC
Q 039362 395 QPDHDGRYVGLSNVYAIF-KRWDEARTTREAMETRGVKKYPGW 436 (440)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~ 436 (440)
.|... +|..+.+.-... |+-.+++..+-+.++. +.+|.|
T Consensus 359 ~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW 398 (531)
T COG3898 359 APRES-AYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAW 398 (531)
T ss_pred Cchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCcc
Confidence 77653 666666665544 8888888888776664 344543
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.29 E-value=1.3e-05 Score=58.61 Aligned_cols=103 Identities=13% Similarity=0.073 Sum_probs=69.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHhhcCCC--CCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc----HhHHHHHH
Q 039362 300 TFLGLLSACAHGGLVMEAWYFFKSLGKRGMV--PKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPT----ASMLGSLL 372 (440)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~----~~~~~~l~ 372 (440)
++..+...+.+.|++++|...|..+...... .....+..+...+.+.|++++|...++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555666677777777777777664211 01234555677777777777777777776 33333 34566777
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCchH
Q 039362 373 TGCMNHGKLDLAEIVGKKLVELQPDHDGRY 402 (440)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 402 (440)
.++.+.|++++|...++++++..|+++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 778888888888888888888888876543
No 152
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=0.00018 Score=61.47 Aligned_cols=335 Identities=11% Similarity=-0.066 Sum_probs=181.5
Q ss_pred HhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCC---CchhhHHHHHHHHHhcCChHHH
Q 039362 72 ASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT---KMSVSWNSMLDGYAKCGEMNMA 148 (440)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 148 (440)
.+.+..++..|+..+...++..+. +...|..-+..+...|+++.|.--.+.-.+ .......-.-+++...++..+|
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 345666777888888888887644 455666666666667777766554433322 1222333334444444555555
Q ss_pred HHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHcCC
Q 039362 149 RQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGS-KANEVTLVSVL-CACAHLGALDQGRMMLRYMIDKGL 226 (440)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~ 226 (440)
.+.++ +...+ ....++..++....... +|.-.++..+- .++...|+.++|.++--.+++..
T Consensus 137 ~~~~~-----~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld- 199 (486)
T KOG0550|consen 137 EEKLK-----SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD- 199 (486)
T ss_pred HHHhh-----hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-
Confidence 55544 11111 12233333444333322 23334444433 34567788888888877777665
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhh-------------HHHHHHHHHhcCChHHHHHHHHHHHHc-
Q 039362 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI-------------WNAMIGGLAMHGFVKESLELFTEMQIV- 292 (440)
Q Consensus 227 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~a~~~~~~m~~~- 292 (440)
..+......=..++.-.++.+.|...|++.....|+-.. +..-..-..+.|++..|.+.+.+.+..
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 333333333334455677888888888888876665432 222233456778888888888887653
Q ss_pred --CCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccH---
Q 039362 293 --GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPK-SEHYACMVDALSRAGQVTEAYEFICQM-PLEPTA--- 365 (440)
Q Consensus 293 --~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~--- 365 (440)
+..|+...|.....+..+.|+..+|+.--+...+.. |. ...|..-..++...++|++|.+-+++. ....+.
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r 357 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIR 357 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchH
Confidence 234445556666666777888888888777776632 21 122333344556677888888888876 323232
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCchHHHHHHHHH---hccChHHHHHHHHHHHh
Q 039362 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVEL-QPDHDGRYVGLSNVYA---IFKRWDEARTTREAMET 427 (440)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 427 (440)
.++.....++-+..+.+. ..++--.... ..+....|..+..++. ..|.-.+|...|++.-+
T Consensus 358 ~~l~~A~~aLkkSkRkd~-ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevge 422 (486)
T KOG0550|consen 358 RTLREAQLALKKSKRKDW-YKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGE 422 (486)
T ss_pred HHHHHHHHHHHHhhhhhH-HHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHH
Confidence 333333333333322211 1111111111 1222335555555442 24555677777766643
No 153
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.29 E-value=1.4e-06 Score=47.18 Aligned_cols=33 Identities=30% Similarity=0.659 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC
Q 039362 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP 61 (440)
Q Consensus 29 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 61 (440)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 577888888888888888888888888777776
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.28 E-value=2.6e-06 Score=54.47 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=51.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 371 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
+...+...|++++|+..|+++++..|.++..+..++.++...|++++|...++++++...
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456778899999999999999999999999999999999999999999999998877543
No 155
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.9e-05 Score=64.87 Aligned_cols=109 Identities=14% Similarity=0.059 Sum_probs=91.4
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCCchHHHH
Q 039362 331 PKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMN---HGKLDLAEIVGKKLVELQPDHDGRYVGL 405 (440)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l 405 (440)
-|...|..|...|...|++..|..-|.+. .+.| ++..+..+..++.. .....++..++++++..+|.+..+...|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 47888999999999999999999999988 4444 45666667666553 2346789999999999999999999999
Q ss_pred HHHHHhccChHHHHHHHHHHHhcCCccCCCCCCC
Q 039362 406 SNVYAIFKRWDEARTTREAMETRGVKKYPGWSFV 439 (440)
Q Consensus 406 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 439 (440)
+..++..|++.+|...++.|++.....+|..+-|
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 9999999999999999999999988777765544
No 156
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=0.004 Score=57.30 Aligned_cols=201 Identities=12% Similarity=0.073 Sum_probs=108.0
Q ss_pred CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHH----------HhhchhcHHHHHHHHHHHHHcCC
Q 039362 25 NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAK----------ASGRLAKRELAVAVHAQIAKTGY 94 (440)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~a~~~~~~~~~~~~ 94 (440)
.|.+..|..+.......-.++.|...|-+...- |.......|-. .-+--|++++|.++|-++-..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 466678888877777777777777766655432 11111111111 1122367777777776664432
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCC-----chhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHH
Q 039362 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK-----MSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDG 169 (440)
Q Consensus 95 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 169 (440)
..+..+.+.||+-...++++.-... -...|+.+...+.....|++|.+.|...... ...+.+
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ec 831 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIEC 831 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHH
Confidence 2355666777777777777654321 1235777777777777777777776655321 123445
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHH
Q 039362 170 YVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249 (440)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 249 (440)
+.+..++++-..+-..+ +-+....-.+...+.+.|.-++|.+.+-+ .+. | ...+..+...++|.+|
T Consensus 832 ly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~-p-----kaAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL-P-----KAAVHTCVELNQWGEA 897 (1189)
T ss_pred HHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-c-----HHHHHHHHHHHHHHHH
Confidence 55555555444433332 33444455556666666666666555432 221 1 1233445555566666
Q ss_pred HHHHhhh
Q 039362 250 LIVFHGV 256 (440)
Q Consensus 250 ~~~~~~~ 256 (440)
.++-++.
T Consensus 898 velaq~~ 904 (1189)
T KOG2041|consen 898 VELAQRF 904 (1189)
T ss_pred HHHHHhc
Confidence 5555443
No 157
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.23 E-value=0.0028 Score=55.20 Aligned_cols=405 Identities=10% Similarity=0.052 Sum_probs=217.1
Q ss_pred HHHhhhcC--CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCC
Q 039362 17 CKVLSHLS--NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGY 94 (440)
Q Consensus 17 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 94 (440)
+++-+++. +.|+.+|-.|+.-+...|..++..+++++|..- .+--+.+|..-+..-...+++..+..+|.+.+....
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 35556665 567889999999999999999999999999763 233455688888877778899999999999988654
Q ss_pred CCcHHHHHHHHHHHHhcCC---------HHHHHHHhhCC--CCC-chhhHHHHHHH---H------HhcCChHHHHHHHh
Q 039362 95 ESDLFISNSLIHMYGSCGD---------IVYAREVFDGM--PTK-MSVSWNSMLDG---Y------AKCGEMNMARQVFE 153 (440)
Q Consensus 95 ~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~--~~~-~~~~~~~l~~~---~------~~~~~~~~a~~~~~ 153 (440)
+...|...++.-.+.+. +-+|.++.-.. .+| ....|+..+.- . ..+.++|...+.+.
T Consensus 108 --~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 --NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred --cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 46666666654444331 22232222111 122 23334443332 2 33445566677777
Q ss_pred hCCC-C---------chhhHHHHHHHHHh-------cCCHHHHHHHHHHHHh--cCCC----CCHHHHHHH---------
Q 039362 154 LMPE-R---------NVVSWSALIDGYVK-------CGDYKEALVIFEEMRD--VGSK----ANEVTLVSV--------- 201 (440)
Q Consensus 154 ~~~~-~---------~~~~~~~l~~~~~~-------~~~~~~a~~~~~~~~~--~~~~----~~~~~~~~l--------- 201 (440)
++.. | |-..|..=+..... .--+-.|.+.++++.. .|.. .+..+++.+
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 7654 1 11222111111100 0113345555555422 2221 122222221
Q ss_pred --HHHHHhc-----CC--hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHH
Q 039362 202 --LCACAHL-----GA--LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGG 272 (440)
Q Consensus 202 --~~~~~~~-----~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 272 (440)
|.-=... |+ .....-++++.... ++....+|--.-..+...++-+.|+..........|....+ +...
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~--lse~ 342 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMF--LSEY 342 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchhee--HHHH
Confidence 1110000 01 01111222222222 13333444444444455666677776666554444431111 1111
Q ss_pred HHhcCChHHHHHHHHHHH-----------------------------HcCCCccHhhHHHHHHHHHcCCChHHHHHHHHH
Q 039362 273 LAMHGFVKESLELFTEMQ-----------------------------IVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323 (440)
Q Consensus 273 ~~~~~~~~~a~~~~~~m~-----------------------------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 323 (440)
|.-.++.+.....|+... -....--...|...+....+..-.+.|..+|-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 111122222222111110 000011123455566666677778888888888
Q ss_pred HhhcC-CCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccHhHH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCC--
Q 039362 324 LGKRG-MVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTASML-GSLLTGCMNHGKLDLAEIVGKKLVELQPDH-- 398 (440)
Q Consensus 324 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-- 398 (440)
+.+.+ +.+++.++++++..+ ..|+...|..+|+-- ..-||...| ...+..+...++-+.|..+|+..+..-..+
T Consensus 423 ~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~ 501 (660)
T COG5107 423 LRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQL 501 (660)
T ss_pred HhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhh
Confidence 88877 566777788777755 457777888888764 344555444 455666677888888888888666543222
Q ss_pred CchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 399 DGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 399 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
..+|..++.--..-|+...+..+-+++...
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 346777777777778887777766666543
No 158
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.9e-06 Score=46.30 Aligned_cols=33 Identities=52% Similarity=0.803 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcc
Q 039362 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297 (440)
Q Consensus 265 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 297 (440)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 159
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.19 E-value=0.00011 Score=54.73 Aligned_cols=100 Identities=7% Similarity=0.011 Sum_probs=70.7
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH
Q 039362 157 ERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236 (440)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 236 (440)
..+......+...+...|++++|.++|+.+.... +-+..-|..|..++-..|++++|+..|......+ +.++..+..+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 3344455556666777788888888887776653 3345556666677777788888888888877776 5677777777
Q ss_pred HHHHHhcCCHHHHHHHHhhhhh
Q 039362 237 IDMYAKCGAIKEALIVFHGVEK 258 (440)
Q Consensus 237 ~~~~~~~g~~~~A~~~~~~~~~ 258 (440)
..++...|+.+.|++.|+.+..
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7788888888888777777664
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.18 E-value=8.2e-06 Score=71.91 Aligned_cols=105 Identities=18% Similarity=0.059 Sum_probs=86.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCCh
Q 039362 304 LLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKL 381 (440)
Q Consensus 304 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 381 (440)
-...+...|+++.|+..|+++++... .+...|..+..+|...|++++|+..++++ .+.| +...|..+..+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 34556678999999999999998642 25667888889999999999999999998 5666 456788888999999999
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039362 382 DLAEIVGKKLVELQPDHDGRYVGLSNVY 409 (440)
Q Consensus 382 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (440)
++|+..|+++++++|.++.....+..+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999987666655443
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=2e-05 Score=64.40 Aligned_cols=100 Identities=20% Similarity=0.149 Sum_probs=56.5
Q ss_pred HcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccH-hHHHHHHHHHHhcCChhHHHH
Q 039362 309 AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTA-SMLGSLLTGCMNHGKLDLAEI 386 (440)
Q Consensus 309 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~ 386 (440)
.+.+++++|+..|.++++.. +-|...|..-..+|.+.|.++.|++-.+.. .+.|.. ..|..|..+|...|++++|++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 34556666666666666532 114444555556666666666666665555 455533 556666666666666666666
Q ss_pred HHHHHHhcCCCCCchHHHHHHHH
Q 039362 387 VGKKLVELQPDHDGRYVGLSNVY 409 (440)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~ 409 (440)
.|+++++++|.+......|-.+-
T Consensus 171 aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 171 AYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHhhhccCCCcHHHHHHHHHHH
Confidence 66666666666654444444333
No 162
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=4.9e-06 Score=45.03 Aligned_cols=33 Identities=33% Similarity=0.534 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 039362 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296 (440)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 296 (440)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466777777777777777777777777766665
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.15 E-value=5.9e-05 Score=52.42 Aligned_cols=92 Identities=23% Similarity=0.226 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 039362 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243 (440)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 243 (440)
..+...+...|++++|...+++..+.. +.+...+..+..++...+++++|.+.++...+.. +.+...+..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344455555566666666665554432 2222344444555555555555555555555443 33334444455555555
Q ss_pred CCHHHHHHHHhhhh
Q 039362 244 GAIKEALIVFHGVE 257 (440)
Q Consensus 244 g~~~~A~~~~~~~~ 257 (440)
|++++|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555554443
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.07 E-value=4.9e-05 Score=59.66 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcC-CCCcc----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 039362 336 YACMVDALSRAGQVTEAYEFICQM-PLEPT----ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410 (440)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (440)
+..+...+...|++++|...+++. ...|+ ...+..+...+...|++++|...++++++..|.+...+..++.++.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344444455555555555555544 22221 2345556666666666666666666666666666666666666666
Q ss_pred hccC--------------hHHHHHHHHHHHhcC
Q 039362 411 IFKR--------------WDEARTTREAMETRG 429 (440)
Q Consensus 411 ~~g~--------------~~~A~~~~~~~~~~~ 429 (440)
..|+ +++|.+++++....+
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 6555 455666666655543
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.06 E-value=0.0011 Score=56.82 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=66.8
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHHhhhhhc----C-C--chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----ccH
Q 039362 232 LQTSLIDMYAKC-GAIKEALIVFHGVEKH----Q-S--DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT-----PDE 298 (440)
Q Consensus 232 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~ 298 (440)
.+..+...|... |++++|++.|++.... . + -...+..+...+.+.|++++|.++|++....... .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455556666 6777777777766543 1 1 1234555666777777788888777776553221 122
Q ss_pred h-hHHHHHHHHHcCCChHHHHHHHHHHhhc--CCCCC--cchHHHHHHHHHh--cCCHHHHHHHHhcC
Q 039362 299 I-TFLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPK--SEHYACMVDALSR--AGQVTEAYEFICQM 359 (440)
Q Consensus 299 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~--~~~~~~a~~~~~~~ 359 (440)
. .|...+-++...|+...|...+++.... ++..+ ......|+.++-. ...++++..-|+.+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 1 2222333455567777777777777654 22211 1233445555542 23355566666665
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.04 E-value=6.3e-06 Score=53.25 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=45.5
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
.+.|++++|+.+|+++.+.+|.+..++..++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678888999999999888888888888889999999999999888887776543
No 167
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.04 E-value=0.0001 Score=50.88 Aligned_cols=81 Identities=15% Similarity=0.076 Sum_probs=70.1
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCC-CCCcchHHHHHHHhhchh--------cHHHHHHHHHHHHHcCCCCcHHH
Q 039362 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAGV-SPDHLTYPFLAKASGRLA--------KRELAVAVHAQIAKTGYESDLFI 100 (440)
Q Consensus 30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 100 (440)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++...++.. ..-..+.+|++|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 555677788888999999999999999999 899999999998876542 34568899999999999999999
Q ss_pred HHHHHHHHHh
Q 039362 101 SNSLIHMYGS 110 (440)
Q Consensus 101 ~~~l~~~~~~ 110 (440)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.03 E-value=0.0022 Score=53.23 Aligned_cols=175 Identities=11% Similarity=0.027 Sum_probs=101.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhcCCchhhH----HHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHc-
Q 039362 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIW----NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH- 310 (440)
Q Consensus 236 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~- 310 (440)
....+...|++++|...|+.+....|+.... -.++.++.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 4444555677777777777776665543221 23455667777777777777777665311111223333333221
Q ss_pred -C---------------CC---hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHH
Q 039362 311 -G---------------GL---VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371 (440)
Q Consensus 311 -~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l 371 (440)
. .+ ..+|...|+.+++. -|+. .-..+|...+..+....- ..-..+
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~la-~~e~~i 181 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDRLA-KYELSV 181 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHHHH-HHHHHH
Confidence 1 11 23344555555553 1322 223333333333310100 111245
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhccChHHHHHHHHHHH
Q 039362 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDG---RYVGLSNVYAIFKRWDEARTTREAME 426 (440)
Q Consensus 372 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 426 (440)
...|.+.|.+..|+.-++.+++..|..+. ++..+..+|...|..++|.+....+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 66688899999999999999998877664 57788889999999999998876654
No 169
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.01 E-value=2.5e-05 Score=51.23 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=51.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 373 TGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
..+.+.+++++|.+++++++..+|.++..+...+.++...|++++|.+.+++..+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4677889999999999999999999999999999999999999999999999887654
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.01 E-value=0.00025 Score=62.68 Aligned_cols=98 Identities=10% Similarity=-0.018 Sum_probs=68.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 039362 167 IDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI 246 (440)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 246 (440)
...+...|++++|++.|++.+... +-+...+..+..++...|++++|...++.+++.. +.+...+..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 345566777777777777777654 3455666667777777777777777777777765 55666777777777777888
Q ss_pred HHHHHHHhhhhhcCCchhhH
Q 039362 247 KEALIVFHGVEKHQSDVLIW 266 (440)
Q Consensus 247 ~~A~~~~~~~~~~~~~~~~~ 266 (440)
++|+..|++..+..|+....
T Consensus 87 ~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHH
Confidence 88877777777666654433
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.01 E-value=0.00017 Score=66.61 Aligned_cols=63 Identities=21% Similarity=0.098 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
..+..+.......|++++|...++++++++| +...|..++.++...|+.++|.+.+++..+.+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444444444445556666666666666555 23455555555666666666666665555544
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.00 E-value=0.003 Score=52.41 Aligned_cols=59 Identities=15% Similarity=-0.050 Sum_probs=33.5
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCCCCcch----HHHHHHHhhchhcHHHHHHHHHHHHHcCC
Q 039362 34 VIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT----YPFLAKASGRLAKRELAVAVHAQIAKTGY 94 (440)
Q Consensus 34 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 94 (440)
....+.+.|++++|++.|+.+... .|+... .-.++.++.+.+++++|...+++..+..+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 344455566677777777666653 233221 12344556666666667666666666543
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.99 E-value=6.3e-05 Score=58.83 Aligned_cols=93 Identities=13% Similarity=-0.040 Sum_probs=70.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 039362 333 SEHYACMVDALSRAGQVTEAYEFICQM-PLEPT----ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSN 407 (440)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 407 (440)
...+..++..+...|++++|...+++. .+.|+ ..++..+...+...|++++|+..++++.+..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566677777788888888888877 33332 2467888888899999999999999999998888888888888
Q ss_pred HHH-------hccChHHHHHHHHHH
Q 039362 408 VYA-------IFKRWDEARTTREAM 425 (440)
Q Consensus 408 ~~~-------~~g~~~~A~~~~~~~ 425 (440)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 777877555555443
No 174
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.014 Score=54.24 Aligned_cols=114 Identities=13% Similarity=0.089 Sum_probs=87.1
Q ss_pred CccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHH
Q 039362 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTG 374 (440)
Q Consensus 295 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~ 374 (440)
.-...+.+--+.-+...|+..+|.++-++.+ -||...|..-+.++...+++++-+++-+..+ .+.-|.....+
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~ 753 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEA 753 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHH
Confidence 3444456666666777889999988877664 3788888888999999999999988888774 24556778889
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHH
Q 039362 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTRE 423 (440)
Q Consensus 375 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 423 (440)
|.+.|+.++|.+++-+.-.. .-...+|.+.|++.+|.++--
T Consensus 754 c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 99999999999888765221 157788889999998887643
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.98 E-value=0.0021 Score=54.96 Aligned_cols=201 Identities=15% Similarity=0.247 Sum_probs=96.1
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCc-----chHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 039362 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH-----LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSL 104 (440)
Q Consensus 30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 104 (440)
.|......|-..|++++|.+.|.+........+. ..|......+ +..++++|.+ .|...
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~---------------~~~~A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIE---------------CYEKA 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHH---------------HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHH---------------HHHHH
Confidence 4666666777777777777777765432110000 0111111111 1113333332 33444
Q ss_pred HHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhc-CChHHHHHHHhhCCC-----C----chhhHHHHHHHHHhcC
Q 039362 105 IHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC-GEMNMARQVFELMPE-----R----NVVSWSALIDGYVKCG 174 (440)
Q Consensus 105 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~ 174 (440)
+..|...|++..|-+.+ ..+...|... |++++|.+.|++..+ . -..++..++..+.+.|
T Consensus 101 ~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 45555666665554433 3344455555 666666666665542 1 1234556667777777
Q ss_pred CHHHHHHHHHHHHhcCCCC-----CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCc--hhhHHHHHHHHHh--
Q 039362 175 DYKEALVIFEEMRDVGSKA-----NEV-TLVSVLCACAHLGALDQGRMMLRYMIDKG--LSLT--LPLQTSLIDMYAK-- 242 (440)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~-- 242 (440)
++++|.++|++........ +.. .+...+-++...||+..|...++...... +..+ ......|+.++-.
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D 249 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD 249 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 8888888877765542211 111 22233335556677777777777766442 1111 2233445555443
Q ss_pred cCCHHHHHHHHhhhh
Q 039362 243 CGAIKEALIVFHGVE 257 (440)
Q Consensus 243 ~g~~~~A~~~~~~~~ 257 (440)
...+..++.-|+.+.
T Consensus 250 ~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 250 VEAFTEAVAEYDSIS 264 (282)
T ss_dssp CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHcccC
Confidence 223445555555444
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.94 E-value=3.2e-05 Score=49.33 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=50.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039362 339 MVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (440)
+...+...|++++|.+.|++. ...| +...+..+..++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999988 5556 557888889999999999999999999999998874
No 177
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.93 E-value=0.00023 Score=63.07 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=79.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc--CCchhh
Q 039362 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKG--LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH--QSDVLI 265 (440)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 265 (440)
+.+.+...+..++..+....+.+.+..++-+..... ...-..+..+++..|.+.|..+.++.++..=... -||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 345566677777777777777777777777766542 2222334457777777777777777777654433 567777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcC
Q 039362 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311 (440)
Q Consensus 266 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 311 (440)
++.+|..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777776666566666666555555543
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.93 E-value=6e-05 Score=50.97 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=5.5
Q ss_pred HHHhcCChHHHHHHH
Q 039362 272 GLAMHGFVKESLELF 286 (440)
Q Consensus 272 ~~~~~~~~~~a~~~~ 286 (440)
++.+.|++++|+++|
T Consensus 67 ~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 67 CLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHTT-HHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 333344444444333
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.93 E-value=0.00071 Score=53.08 Aligned_cols=90 Identities=18% Similarity=0.137 Sum_probs=59.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHH
Q 039362 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN--EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 237 (440)
...+..+...+...|++++|...|++.......++ ...+..+..++...|++++|...+.+..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44566667777777888888888887765432222 3456667777777788888888777777654 44455566666
Q ss_pred HHHHhcCCHHHHH
Q 039362 238 DMYAKCGAIKEAL 250 (440)
Q Consensus 238 ~~~~~~g~~~~A~ 250 (440)
.+|...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6776666654443
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.93 E-value=0.0015 Score=49.66 Aligned_cols=126 Identities=15% Similarity=0.058 Sum_probs=61.2
Q ss_pred CccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc---cHhHHHH
Q 039362 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP---TASMLGS 370 (440)
Q Consensus 295 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p---~~~~~~~ 370 (440)
.|+...-..|..+..+.|+..+|...|.+...--+.-|......+.++....+++..|...+++. ...| ++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444445555555555555555555544323334444555555555555555555555554 1111 1222234
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHH
Q 039362 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421 (440)
Q Consensus 371 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 421 (440)
+.+.+...|++.+|+..|+.+....|... .-......+.++|+.++|..-
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhcchhHHHHH
Confidence 45555556666666666666655544422 333344455555555544433
No 181
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.92 E-value=0.00063 Score=57.91 Aligned_cols=142 Identities=12% Similarity=0.123 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 039362 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA-CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239 (440)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 239 (440)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+..++. ++.+...+...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356777777777777888888888887543 3334444444433 33356677788888888776 36777778888888
Q ss_pred HHhcCCHHHHHHHHhhhhhcCCch----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHH
Q 039362 240 YAKCGAIKEALIVFHGVEKHQSDV----LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306 (440)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 306 (440)
+...|+.+.|..+|++....-+.. ..|...+..-.+.|+.+.+..+.+++.+. .|+...+..++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 888888888888888887654433 37888888888888888888888887765 444444444443
No 182
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.91 E-value=1.4e-05 Score=42.09 Aligned_cols=29 Identities=28% Similarity=0.541 Sum_probs=21.3
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcC
Q 039362 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAG 58 (440)
Q Consensus 30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 58 (440)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.91 E-value=0.00052 Score=63.42 Aligned_cols=138 Identities=14% Similarity=0.010 Sum_probs=93.3
Q ss_pred CchhhHHHHHHHHHh--c---CChHHHHHHHHHHHHcCCCccH-hhHHHHHHHHHcC--------CChHHHHHHHHHHhh
Q 039362 261 SDVLIWNAMIGGLAM--H---GFVKESLELFTEMQIVGITPDE-ITFLGLLSACAHG--------GLVMEAWYFFKSLGK 326 (440)
Q Consensus 261 ~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~ 326 (440)
.+...|...+.+... . ++...|..+|++..+. .|+. ..+..+..++... .+...+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 355667766665432 2 2356788888888775 4443 3444433333211 122334444444333
Q ss_pred c-CCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 039362 327 R-GMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400 (440)
Q Consensus 327 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (440)
. ....+...|..+.-.....|++++|...++++ .+.|+...|..+...+...|+.++|...++++..++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 2 12234566777766777789999999999998 77788888999999999999999999999999999999884
No 184
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.90 E-value=0.024 Score=54.03 Aligned_cols=410 Identities=13% Similarity=0.099 Sum_probs=227.0
Q ss_pred cccccccCChhhHHHHhhhcC---CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHH
Q 039362 4 FSALSYLGNIDYSCKVLSHLS---NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE 80 (440)
Q Consensus 4 ~y~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (440)
++...+.|+.++|..+++... ..|..+...+-..|.+.|+.++|..+|+..... -|+......+..+|.+.+++.
T Consensus 50 aLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHH
Confidence 344456699999999998764 457789999999999999999999999999885 577777777888899998888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHhhCCCCCc-h----hhHHHHHHHHHhcCCh
Q 039362 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD----------IVYAREVFDGMPTKM-S----VSWNSMLDGYAKCGEM 145 (440)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~ 145 (440)
+-.++--++.+. .+-++..+=++++...+.-. ..-|.+.++.+.+.+ . .-...-...+...|++
T Consensus 128 ~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~ 206 (932)
T KOG2053|consen 128 KQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKY 206 (932)
T ss_pred HHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccH
Confidence 766666666554 33355555556665554321 234555555555433 1 1122233445678889
Q ss_pred HHHHHHHhh-C----CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH----HHHHH-H--------HHh
Q 039362 146 NMARQVFEL-M----PERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL----VSVLC-A--------CAH 207 (440)
Q Consensus 146 ~~a~~~~~~-~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~-~--------~~~ 207 (440)
++|.+++.. . ...+...-+.-+..+...++|.+..++-.++...|.. |-.+| ..++. . +..
T Consensus 207 ~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-dy~~~~~sv~klLe~~~~~~a~~~~s~ 285 (932)
T KOG2053|consen 207 QEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-DYKIYTDSVFKLLELLNKEPAEAAHSL 285 (932)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-chHHHHHHHHHHHHhcccccchhhhhh
Confidence 999999832 2 2234444456677888889999999998888887522 21111 11111 1 111
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHH---hcCCHHHHHHHHhhhhhcCC----chhhH---------HHHHH
Q 039362 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA---KCGAIKEALIVFHGVEKHQS----DVLIW---------NAMIG 271 (440)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~----~~~~~---------~~l~~ 271 (440)
.+..+...+..++..... ....|-+-+.++. .-|+.+++...|-+--...| |...| ..++.
T Consensus 286 ~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~ 362 (932)
T KOG2053|consen 286 SKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMS 362 (932)
T ss_pred hhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHH
Confidence 223333333333333221 1222333333332 34666665544432211111 11111 11111
Q ss_pred HHH------------------------hcCC-----hHHHHHHHHHHH---HcC------CCccHhh---------HHHH
Q 039362 272 GLA------------------------MHGF-----VKESLELFTEMQ---IVG------ITPDEIT---------FLGL 304 (440)
Q Consensus 272 ~~~------------------------~~~~-----~~~a~~~~~~m~---~~~------~~p~~~~---------~~~l 304 (440)
.+. -.|. .+.....+.+.. +.| +-|+..+ .+.|
T Consensus 363 ~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~L 442 (932)
T KOG2053|consen 363 KLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHL 442 (932)
T ss_pred HhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHH
Confidence 111 1121 122233332221 222 2334333 2455
Q ss_pred HHHHHcCCChH---HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCc-cHhHHHHH-HHHHHhcC
Q 039362 305 LSACAHGGLVM---EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP-TASMLGSL-LTGCMNHG 379 (440)
Q Consensus 305 ~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p-~~~~~~~l-~~~~~~~g 379 (440)
++.|.+.++.. +|+-+++.-.... +.|..+-..+++.|.-.|-+..|.++|+.+.++. -..|...+ ..-+...|
T Consensus 443 id~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g 521 (932)
T KOG2053|consen 443 IDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSG 521 (932)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcc
Confidence 66677776655 4444444444321 2244444567888888888888888888884332 12333333 33455678
Q ss_pred ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHH
Q 039362 380 KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421 (440)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 421 (440)
++..+...+........++..--.-++..-.+.|.+.+..+.
T Consensus 522 ~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em 563 (932)
T KOG2053|consen 522 RSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEM 563 (932)
T ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHH
Confidence 888888888887776544333222333333456666655443
No 185
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.90 E-value=0.00035 Score=59.48 Aligned_cols=131 Identities=12% Similarity=0.125 Sum_probs=64.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHH-HHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 039362 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA-CAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDAL 343 (440)
Q Consensus 265 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (440)
+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34455555555555666666666655332 1122222222222 22234455566666665554 223445555555666
Q ss_pred HhcCCHHHHHHHHhcC--CCCcc---HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 039362 344 SRAGQVTEAYEFICQM--PLEPT---ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397 (440)
Q Consensus 344 ~~~~~~~~a~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 397 (440)
...|+.+.|..+|++. .+.++ ...|...+..-.+.|+.+.+..+.+++.+..|.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6666666666666655 22221 135666666666666666666666666665554
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.85 E-value=0.0015 Score=47.07 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=27.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039362 167 IDGYVKCGDYKEALVIFEEMRDVGSKAN--EVTLVSVLCACAHLGALDQGRMMLRYMID 223 (440)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (440)
..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444445555555555555555443332 12333344444555555555555555443
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.85 E-value=0.00011 Score=47.38 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=36.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHH
Q 039362 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWN 267 (440)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 267 (440)
..|++++|...|+.+.+.. |.+..+...++.+|.+.|++++|..+++++....|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 4566666666666666654 45566666666666666666666666666666555543333
No 188
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00032 Score=57.55 Aligned_cols=100 Identities=17% Similarity=0.166 Sum_probs=76.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 039362 168 DGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247 (440)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 247 (440)
.-+.+.+++.+|+..|.+.+... +-|.+-|..-..+|++.|.++.|++-.+..+..+ +....+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 34566788888888888887763 4566677777788888888888888888777766 566778888888888888888
Q ss_pred HHHHHHhhhhhcCCchhhHHHH
Q 039362 248 EALIVFHGVEKHQSDVLIWNAM 269 (440)
Q Consensus 248 ~A~~~~~~~~~~~~~~~~~~~l 269 (440)
+|++.|++.....|+..+|-.=
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~n 188 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSN 188 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHH
Confidence 8888888888877766655433
No 189
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=3.1e-05 Score=40.70 Aligned_cols=29 Identities=38% Similarity=0.663 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039362 265 IWNAMIGGLAMHGFVKESLELFTEMQIVG 293 (440)
Q Consensus 265 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 293 (440)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.81 E-value=0.00057 Score=49.14 Aligned_cols=56 Identities=25% Similarity=0.071 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC---CCchHHHHHHHHHhccChHHHHHHHH
Q 039362 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPD---HDGRYVGLSNVYAIFKRWDEARTTRE 423 (440)
Q Consensus 368 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 423 (440)
+..+..++...|++++|..++++.....|+ +......++.++...|+.++|.+.+-
T Consensus 41 ~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 41 LIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444555555555555555555554444 33333344445555555555555443
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.81 E-value=0.0054 Score=46.77 Aligned_cols=133 Identities=15% Similarity=0.039 Sum_probs=83.4
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCC-CCCcchHHH
Q 039362 260 QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM-VPKSEHYAC 338 (440)
Q Consensus 260 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 338 (440)
.|++..--.+..++...|+..+|...|++...--..-|......+.++....+++..|...++.+.+.+. .-++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555556666777777777777777777766443445556666677777777777777777777766521 012333445
Q ss_pred HHHHHHhcCCHHHHHHHHhcC-CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039362 339 MVDALSRAGQVTEAYEFICQM-PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLV 392 (440)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 392 (440)
+.+.|...|++..|..-|+.. ...|+...-......+.++|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 667777777777777777766 555655544444555666776666554444433
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.81 E-value=0.00024 Score=59.33 Aligned_cols=59 Identities=15% Similarity=-0.021 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG---RYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 369 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
.-++..+...|++++|...|+++.+..|.++. ++..++.++...|++++|.++++++++
T Consensus 184 y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 184 YWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444555555555555555544443322 233334444445555555555554444
No 193
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.79 E-value=0.0013 Score=51.33 Aligned_cols=80 Identities=10% Similarity=0.040 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 039362 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA--NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238 (440)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (440)
..|..+...+...|++++|+..|++.......+ ...++..+..++...|++++|...++...+.. +.....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 345556666666677777777777665442222 12355566666666677777777666666543 333334444444
Q ss_pred HHH
Q 039362 239 MYA 241 (440)
Q Consensus 239 ~~~ 241 (440)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 194
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.78 E-value=0.02 Score=49.43 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=67.3
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhcC
Q 039362 300 TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379 (440)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g 379 (440)
+.+.-+.-+...|+...|.++-.+.. .|+...|...+++++..++|++-.++... +-.+.-|...+.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHCC
Confidence 44445555666677766666654442 36677777777777777777777766543 223455667777777777
Q ss_pred ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHH
Q 039362 380 KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTT 421 (440)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 421 (440)
+..+|..+..++ .+..-+..|.+.|++.+|.+.
T Consensus 252 ~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 252 NKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHH
Confidence 777777777662 224556667777777777554
No 195
>PRK15331 chaperone protein SicA; Provisional
Probab=97.78 E-value=0.00033 Score=52.53 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=51.7
Q ss_pred HHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHH
Q 039362 343 LSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 420 (440)
+...|++++|..+|+-+ -..| +..-|..|..++...+++++|+..|..+..+++++|......+.+|...|+.+.|+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 34556666666666654 1122 334445555556666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 039362 421 TREAMET 427 (440)
Q Consensus 421 ~~~~~~~ 427 (440)
.|+...+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 6666555
No 196
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.77 E-value=0.00086 Score=59.51 Aligned_cols=119 Identities=16% Similarity=0.082 Sum_probs=91.5
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHH
Q 039362 158 RNVVSWSALIDGYVKCGDYKEALVIFEEMRDV--GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235 (440)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (440)
-+......+++.+....+.+.+..++.++... ....-..|..++++.|...|..+.+..+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 35556677777777788888899998888765 2222345667899999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhc--CCchhhHHHHHHHHHhc
Q 039362 236 LIDMYAKCGAIKEALIVFHGVEKH--QSDVLIWNAMIGGLAMH 276 (440)
Q Consensus 236 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 276 (440)
|+..+.+.|++..|.++...|... ..+..++...+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999887643 23445554444444443
No 197
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.73 E-value=0.00095 Score=46.21 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCchhhH
Q 039362 163 WSALIDGYVKCGDYKEALVIFEEMRDVGS-KANEVTLVSVLCACAHLG--------ALDQGRMMLRYMIDKGLSLTLPLQ 233 (440)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 233 (440)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-....+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 899999999998877653 244566788888888888888888
Q ss_pred HHHHHHHHh
Q 039362 234 TSLIDMYAK 242 (440)
Q Consensus 234 ~~l~~~~~~ 242 (440)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
No 198
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.73 E-value=0.024 Score=48.95 Aligned_cols=103 Identities=19% Similarity=0.156 Sum_probs=51.5
Q ss_pred HHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHH
Q 039362 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316 (440)
Q Consensus 237 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 316 (440)
+.-+...|+...|.++-.+.. -|+...|-..+.+++..++|++-..+... +-++.-|..++.+|.+.|+..+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk--v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK--VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC--CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 333444555555555555544 45555555555666666665554443221 1123455555555555555555
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHh
Q 039362 317 AWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFIC 357 (440)
Q Consensus 317 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (440)
|..+..++ .+..-+..|.++|++.+|.+.--
T Consensus 256 A~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 256 ASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 55555441 11334455555555555555433
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.71 E-value=0.003 Score=51.02 Aligned_cols=165 Identities=15% Similarity=0.084 Sum_probs=82.9
Q ss_pred HHHHHhcCCHHHHHHHHhhhhhcCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccH--hhHHHHHHHHH-
Q 039362 237 IDMYAKCGAIKEALIVFHGVEKHQSD----VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE--ITFLGLLSACA- 309 (440)
Q Consensus 237 ~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~- 309 (440)
...+...|++.+|...|+.+....|+ ....-.++.++.+.|+++.|...++++.+.- |+. ..+...+.+.+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHH
Confidence 33344555555555555555544332 1223344555566666666666666655442 221 11221121111
Q ss_pred ------------cCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHh
Q 039362 310 ------------HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377 (440)
Q Consensus 310 ------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~ 377 (440)
..+...+|...|+.+++. |=......+|...+..+.... ...-..++..|.+
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~---------------yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKR---------------YPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH----------------TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHH---------------CcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 112233444444444443 333333344444433331000 1111245677889
Q ss_pred cCChhHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhccChHHHH
Q 039362 378 HGKLDLAEIVGKKLVELQPDHDG---RYVGLSNVYAIFKRWDEAR 419 (440)
Q Consensus 378 ~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~ 419 (440)
.|.+..|..-++.+++..|+.+. .+..++.+|.+.|..+.|.
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999999998888764 4677888888888887543
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.022 Score=46.18 Aligned_cols=134 Identities=16% Similarity=0.052 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHH-----HH
Q 039362 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYAC-----MV 340 (440)
Q Consensus 266 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~ 340 (440)
.+.++..+.-.|.+.-.+..+++.++...+-++.....|.+.-.+.|+.+.|...|++..+..-+.+....+. ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3445555566677777777777777665455556666677777777777777777776655422233333322 22
Q ss_pred HHHHhcCCHHHHHHHHhcCC-CCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039362 341 DALSRAGQVTEAYEFICQMP-LEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (440)
..|.-.+++.+|...+.+.. ..| ++...|.-.-+..-.|+..+|++..+.+.+..|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 33445566667777676662 222 223333333344446677777777777777666543
No 201
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.65 E-value=0.00066 Score=53.24 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=82.6
Q ss_pred HHHHhhhc--CCCChHHHHHHHHHHHc-----cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhch------------
Q 039362 16 SCKVLSHL--SNPRIFYWNTVIRGYSK-----SKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRL------------ 76 (440)
Q Consensus 16 A~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------ 76 (440)
-...|+.. ...|-.+|..+++.+.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 35566665 47788899999998875 477788888899999999999999999999987542
Q ss_pred ----hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 039362 77 ----AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113 (440)
Q Consensus 77 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 113 (440)
.+.+-|++++++|...|+-||..++..++..+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346799999999999999999999999999987775
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.0072 Score=48.85 Aligned_cols=130 Identities=10% Similarity=0.071 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----chhhHHHHH
Q 039362 163 WSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL-----TLPLQTSLI 237 (440)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~ 237 (440)
.+.++..+.-.|.+.-....+++.++...+.++.....+.+.-.+.||.+.|...|+...+..-.. ...+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344555555566666666677776665545556666666666667777777777776655432222 222333334
Q ss_pred HHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039362 238 DMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292 (440)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 292 (440)
..|.-.+++..|...+.++....| ++..-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555666666666666665433 3444444444444456666677777666654
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.60 E-value=0.0095 Score=48.12 Aligned_cols=63 Identities=19% Similarity=0.100 Sum_probs=43.6
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHcCCCCC----cchHHHHHHHhhchhcHHHHHHHHHHHHHcCCC
Q 039362 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPD----HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYE 95 (440)
Q Consensus 31 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 95 (440)
.-.....+...|++.+|+..|+.+...- |+ ....-.++.++.+.|+++.|...++..++.-+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3344566778899999999999988752 32 234556777788889999999999988876443
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.59 E-value=0.00042 Score=44.73 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcC-ChHHHHHHHHH
Q 039362 235 SLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHG-FVKESLELFTE 288 (440)
Q Consensus 235 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~ 288 (440)
.+...+...|++++|+..|++..+..| +...|..+..++...| ++++|++.+++
T Consensus 8 ~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 8 NLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 333333333333333333333333322 2333333333333333 33444443333
No 205
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.57 E-value=0.00078 Score=57.77 Aligned_cols=127 Identities=13% Similarity=-0.053 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhc----CCC-CCcchHHHHHHHHHhcCCHHHHHHHHhcC-------C-CCccHhH
Q 039362 301 FLGLLSACAHGGLVMEAWYFFKSLGKR----GMV-PKSEHYACMVDALSRAGQVTEAYEFICQM-------P-LEPTASM 367 (440)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~-~~p~~~~ 367 (440)
|..|...|.-.|+++.|+...+.-... |-+ .....+..+..++.-.|+++.|.+.|+.. + .......
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 344444444456666665544322111 111 11223445555666666666666666543 1 1122333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc----C--CCCCchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 368 LGSLLTGCMNHGKLDLAEIVGKKLVEL----Q--PDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 368 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
..+|..+|.-..++++|+.++.+=+.. + ......+.+|+.++...|..++|+.+.+.-++
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445555555555666666665543332 2 12223566666666666666666666555444
No 206
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0076 Score=50.00 Aligned_cols=100 Identities=14% Similarity=0.049 Sum_probs=62.0
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCccHhhHH
Q 039362 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMH---GFVKESLELFTEMQIVGITPDEITFL 302 (440)
Q Consensus 227 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~ 302 (440)
|.|...|..|...|...|+.+.|...|....+..| +...+..+..++... ....++..+|+++.... +.|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 66666777777777777777777777776665533 455555555544432 23446666777766553 34455556
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhc
Q 039362 303 GLLSACAHGGLVMEAWYFFKSLGKR 327 (440)
Q Consensus 303 ~l~~~~~~~~~~~~a~~~~~~~~~~ 327 (440)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666666677777777777777664
No 207
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.50 E-value=0.00019 Score=41.31 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 039362 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSN 407 (440)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 407 (440)
.++..+...+...|++++|+++++++++.+|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999988877654
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.50 E-value=0.0013 Score=51.72 Aligned_cols=99 Identities=15% Similarity=0.235 Sum_probs=67.3
Q ss_pred HHHHhhhhhcCCchhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcC-------------
Q 039362 250 LIVFHGVEKHQSDVLIWNAMIGGLAM-----HGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG------------- 311 (440)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------------- 311 (440)
...|+.......+-.+|..++..|.+ .|..+=....++.|.+.|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 34444444335566777777777764 467777778888899999999999999999887542
Q ss_pred ---CChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC
Q 039362 312 ---GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQ 348 (440)
Q Consensus 312 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (440)
.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2334566666666666666666666666666655443
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.48 E-value=0.056 Score=46.62 Aligned_cols=241 Identities=15% Similarity=0.132 Sum_probs=96.8
Q ss_pred cCCHHHHHHHhhCCCC-Cchh--hHHHHHHHHHhcCChHHHHHHHhhCCC--C-chhhHHHHHHHHHhcCCHHHHHHHHH
Q 039362 111 CGDIVYAREVFDGMPT-KMSV--SWNSMLDGYAKCGEMNMARQVFELMPE--R-NVVSWSALIDGYVKCGDYKEALVIFE 184 (440)
Q Consensus 111 ~g~~~~a~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 184 (440)
.|+++.|.+-|+.|.+ |... -...|.-...+.|+.+.|.+.-+..-. | -.-.+...+...+..|+|+.|+++++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 3555555555555543 1111 111222222344555555544444332 1 12344455555555555555555555
Q ss_pred HHHhcC-CCCCHHH--HHHHHHHH--H-hcCChHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHhcCCHHHHHHHHhhhh
Q 039362 185 EMRDVG-SKANEVT--LVSVLCAC--A-HLGALDQGRMMLRYMIDKGLSLTLP-LQTSLIDMYAKCGAIKEALIVFHGVE 257 (440)
Q Consensus 185 ~~~~~~-~~~~~~~--~~~l~~~~--~-~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 257 (440)
.-.... +.++..- -..|+.+- . -..+...|...-.+..+. .|+.. .-..-..++.+.|+..++-.+++.+-
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 433221 1222211 11111111 1 112334444443333332 22211 11223345555556666555555555
Q ss_pred hcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcc-HhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcch
Q 039362 258 KHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITPD-EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEH 335 (440)
Q Consensus 258 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 335 (440)
+..|.+..+...+ +.+.|+ .+..-+++.... .++|| ..+...+..+-...|++..|..--+.... ..|....
T Consensus 291 K~ePHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~ 364 (531)
T COG3898 291 KAEPHPDIALLYV--RARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESA 364 (531)
T ss_pred hcCCChHHHHHHH--HhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhH
Confidence 5544443332221 122222 222222222111 12232 23344444444555555555444443333 2345555
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHhcC
Q 039362 336 YACMVDALS-RAGQVTEAYEFICQM 359 (440)
Q Consensus 336 ~~~l~~~~~-~~~~~~~a~~~~~~~ 359 (440)
|..|.+.-. ..|+-.++..++-+.
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHH
Confidence 544444333 235555555555444
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.47 E-value=0.0016 Score=54.39 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=67.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCc----chHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc----HhHHHH
Q 039362 300 TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS----EHYACMVDALSRAGQVTEAYEFICQM-PLEPT----ASMLGS 370 (440)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~----~~~~~~ 370 (440)
.|...+....+.|++++|+..|+.+++.. |+. ..+..+...|...|++++|...|+.+ ...|+ ...+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444455677777777777777753 332 35566777777888888888887776 22332 345555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039362 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 371 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (440)
++..+...|+.++|..+|+++++..|.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 66777788999999999999998888875
No 211
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.46 E-value=9.4e-05 Score=39.58 Aligned_cols=34 Identities=32% Similarity=0.485 Sum_probs=31.1
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhccChHHHHH
Q 039362 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420 (440)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 420 (440)
+|+++++.+|+++.+|..++.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999999999999999999863
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.42 E-value=0.00076 Score=59.35 Aligned_cols=97 Identities=14% Similarity=0.059 Sum_probs=64.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccHh----HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHH
Q 039362 332 KSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTAS----MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLS 406 (440)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 406 (440)
+...++.+..+|...|++++|+..|++. .+.|+.. .|..+..+|...|+.++|+..++++++..+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 3456777888888888888888888885 6677643 4778888888888888888888888886322 222111
Q ss_pred H--HHHhccChHHHHHHHHHHHhcCCc
Q 039362 407 N--VYAIFKRWDEARTTREAMETRGVK 431 (440)
Q Consensus 407 ~--~~~~~g~~~~A~~~~~~~~~~~~~ 431 (440)
. .+....+.++..++++.+..-|.+
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 112233445667777777766653
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.42 E-value=0.049 Score=50.08 Aligned_cols=255 Identities=13% Similarity=0.103 Sum_probs=124.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHH
Q 039362 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEA 179 (440)
Q Consensus 100 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 179 (440)
.+.+-+..|...|.+++|.++----. ....|.-|.......=+++-|.+.|.++.. -.+-+.
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRd----------------l~~L~l 619 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGV--TDTDWRELAMEALEALDFETARKAYIRVRD----------------LRYLEL 619 (1081)
T ss_pred cccccchhhhhccchhhhhcccccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhc----------------cHHHHH
Confidence 34444555666777766654321111 112244444333333344444444333321 123344
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh---
Q 039362 180 LVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGV--- 256 (440)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 256 (440)
..-++++.+.|-.|+... +...++-.|++.+|.++|.+- |.. +..++.|.....++.|.++....
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~ 687 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPK 687 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChH
Confidence 445666777776676643 344556677777777777543 211 12233333333333333333221
Q ss_pred ---------hhcCCchhhHHHHHHHHHhcCChHHHHHHHHH------HHHcCC---CccHhhHHHHHHHHHcCCChHHHH
Q 039362 257 ---------EKHQSDVLIWNAMIGGLAMHGFVKESLELFTE------MQIVGI---TPDEITFLGLLSACAHGGLVMEAW 318 (440)
Q Consensus 257 ---------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------m~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~ 318 (440)
.+...++.--.+....+...|+.++|..+..+ +.+-+. ..+..+...+...+.+...+.-|-
T Consensus 688 eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 688 EKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHH
Confidence 11111111112334445556666666654321 111111 223334444444455566666777
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccHhH-----------HHHHHHHHHhcCChhHHHH
Q 039362 319 YFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTASM-----------LGSLLTGCMNHGKLDLAEI 386 (440)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~-----------~~~l~~~~~~~g~~~~a~~ 386 (440)
++|.+|-.. ..+++.....+++++|..+-++. +..|++.. +...-.+|.+.|+..+|.+
T Consensus 768 eIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~ 838 (1081)
T KOG1538|consen 768 EIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQ 838 (1081)
T ss_pred HHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHH
Confidence 777766432 24666777888888888888877 44444321 2222345556666666766
Q ss_pred HHHHHHh
Q 039362 387 VGKKLVE 393 (440)
Q Consensus 387 ~~~~~~~ 393 (440)
+++++..
T Consensus 839 vLeQLtn 845 (1081)
T KOG1538|consen 839 VLEQLTN 845 (1081)
T ss_pred HHHHhhh
Confidence 6666543
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.41 E-value=0.055 Score=47.33 Aligned_cols=163 Identities=15% Similarity=0.036 Sum_probs=83.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhhhhcC----C-chhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCccHhhHHHHHH
Q 039362 235 SLIDMYAKCGAIKEALIVFHGVEKHQ----S-DVLIWNAMIGGLAM---HGFVKESLELFTEMQIVGITPDEITFLGLLS 306 (440)
Q Consensus 235 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 306 (440)
.++-+|....+++..+++++.+.... + ....-....-++.+ .|+.++|.+++..+......+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34444555555555555555554321 0 11111122233444 5666666666666444444555666665555
Q ss_pred HHHc---------CCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC-HH---HHHHHH---hc-----C--CCCc
Q 039362 307 ACAH---------GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQ-VT---EAYEFI---CQ-----M--PLEP 363 (440)
Q Consensus 307 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~-----~--~~~p 363 (440)
.|-. ....++|+..|.+.-+. .|+...=-.++..+.-.|. .+ +..++- .. - .-..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5421 12356666666665553 2433322122222222332 11 222221 11 0 1223
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039362 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (440)
+-..+.+++.++.-.|++++|.+.++++.++.|+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 445566788888899999999999999999876654
No 215
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.14 Score=48.70 Aligned_cols=163 Identities=9% Similarity=0.022 Sum_probs=107.3
Q ss_pred ChhhHHHHhhhcC-CCCh--HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHH
Q 039362 12 NIDYSCKVLSHLS-NPRI--FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQ 88 (440)
Q Consensus 12 ~~~~A~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 88 (440)
-++-|..+-.... .++. .......+.+.+.|++++|...|-+.+.. +.| ..+|.-+....+...-..+++.
T Consensus 349 ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~ 422 (933)
T KOG2114|consen 349 LYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEA 422 (933)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHH
Confidence 3444555544332 2221 23455566788899999999988776543 333 4467777778888888899999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchh--hHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHH
Q 039362 89 IAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSV--SWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSAL 166 (440)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 166 (440)
+.+.|.. +..--+.|+.+|.+.++.++-.+..+...+ ... -....+..+.+.+-.++|.-+-.+... .......
T Consensus 423 L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i- 498 (933)
T KOG2114|consen 423 LHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI- 498 (933)
T ss_pred HHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH-
Confidence 9999876 556667899999999999999888887762 222 244555666666666666655544433 2222222
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 039362 167 IDGYVKCGDYKEALVIFEEM 186 (440)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~ 186 (440)
.+-..+++++|++.+..+
T Consensus 499 --lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 499 --LLEDLHNYEEALRYISSL 516 (933)
T ss_pred --HHHHhcCHHHHHHHHhcC
Confidence 334567889998888775
No 216
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.33 E-value=0.098 Score=46.12 Aligned_cols=201 Identities=14% Similarity=0.112 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhH-------HHHHHHHHh----cCCHHHHHHHHhhhhhcCCchh
Q 039362 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ-------TSLIDMYAK----CGAIKEALIVFHGVEKHQSDVL 264 (440)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 264 (440)
.+|..++....+.++...|.+.+.-+.-.. |+...- ..+-+..+. .-+..+=+.+|+.+...+.|..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH
Confidence 456666666677777777776666554332 221111 112222221 1122233444444442222211
Q ss_pred -hHHHH---HHHHHhcCC-hHHHHHHHHHHHHcCCCccHh----hHHHHHHHHH---cCCChHHHHHHHHHHhhcCCCCC
Q 039362 265 -IWNAM---IGGLAMHGF-VKESLELFTEMQIVGITPDEI----TFLGLLSACA---HGGLVMEAWYFFKSLGKRGMVPK 332 (440)
Q Consensus 265 -~~~~l---~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~ 332 (440)
.-.-+ ..-+-+.|. -++|+++++...+-. +-|.. ++..+=.+|. ....+..-..+-+-+.+.|+.|-
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 11111 122333343 566777777665531 11211 1222222222 12334444444444455566553
Q ss_pred cc----hHHHHHHH--HHhcCCHHHHHHHHhcC-CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHH
Q 039362 333 SE----HYACMVDA--LSRAGQVTEAYEFICQM-PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYV 403 (440)
Q Consensus 333 ~~----~~~~l~~~--~~~~~~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 403 (440)
.. .-|.|.++ +..+|++.++.-.-.-. .+.|++.+|..++-+.....++++|..++..+ |++..++.
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L----P~n~~~~d 529 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL----PPNERMRD 529 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC----CCchhhHH
Confidence 22 23333332 44667777776554444 66777777777777777777777777777665 55555444
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.32 E-value=0.00074 Score=44.82 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC---CchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVEL----QPDH---DGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
.+++.+...+...|++++|+..++++++. ++.+ ..++..++.++...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56777888888888888888888888764 2222 23577788888888888888888887654
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.30 E-value=0.0034 Score=54.05 Aligned_cols=130 Identities=12% Similarity=0.010 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH----HcCCC-CchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc-------CCchh
Q 039362 197 TLVSVLCACAHLGALDQGRMMLRYMI----DKGLS-LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH-------QSDVL 264 (440)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~ 264 (440)
.|..+...|.-.|+++.|+...+.-+ +-|-. .....+..+..++.-.|+++.|.+.|+..... .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34445555555667777766554422 22211 22345566777777777777777777654321 11233
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH----HcC-CCccHhhHHHHHHHHHcCCChHHHHHHHHHHhh
Q 039362 265 IWNAMIGGLAMHGFVKESLELFTEMQ----IVG-ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326 (440)
Q Consensus 265 ~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 326 (440)
+.-.|...|.-..++++|+..+.+-. +.+ ..-....+..|..++...|..++|+.+.....+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44456666666666777776665422 111 122335666777777777777777766655444
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.29 E-value=0.027 Score=51.63 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhh--------
Q 039362 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI-------- 265 (440)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------- 265 (440)
+..+...+..-+.+...+.-|.++|..|-+. ..+++.....++|++|..+-++.++..||+..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 3345555555556667778888888777533 34677778888999998888888776665432
Q ss_pred ---HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039362 266 ---WNAMIGGLAMHGFVKESLELFTEMQIV 292 (440)
Q Consensus 266 ---~~~l~~~~~~~~~~~~a~~~~~~m~~~ 292 (440)
|...-++|.+.|+..+|.++++++...
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 333446788889999999999987654
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.29 E-value=0.0021 Score=41.98 Aligned_cols=50 Identities=12% Similarity=0.023 Sum_probs=19.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhh
Q 039362 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257 (440)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 257 (440)
+.+++++|.++++.+...+ |.+...+.....++...|++++|...|+.+.
T Consensus 7 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred hCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334444444444433333 2333333333333333444444444333333
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.28 E-value=0.00094 Score=50.79 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHh-----cCCccCC
Q 039362 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET-----RGVKKYP 434 (440)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 434 (440)
.....++..+...|++++|..++++++..+|-+...+..++.+|...|+..+|.+.|+++.+ .|+.|.|
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 44556777788899999999999999999999999999999999999999999999988854 3665544
No 222
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.16 Score=47.33 Aligned_cols=156 Identities=8% Similarity=0.053 Sum_probs=98.8
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 039362 41 SKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKT-GYESDLFISNSLIHMYGSCGDIVYARE 119 (440)
Q Consensus 41 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 119 (440)
-|.+++|.++|-+|-+++ ..|....+.|++-.+.+++..--.. +-..-...++.+...++....++.|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888887776542 3456667778877666655331100 001123577888888888888888888
Q ss_pred HhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 039362 120 VFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLV 199 (440)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 199 (440)
.+..-.. ....+.++.+..++++.+.+-..+++ +....-.+...+.+.|.-++|.+.+-+.. .|.
T Consensus 818 yY~~~~~-----~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk----- 882 (1189)
T KOG2041|consen 818 YYSYCGD-----TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK----- 882 (1189)
T ss_pred HHHhccc-----hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----
Confidence 8876543 12356677777777777777777764 44455667777778888887777664432 221
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 039362 200 SVLCACAHLGALDQGRMMLRY 220 (440)
Q Consensus 200 ~l~~~~~~~~~~~~a~~~~~~ 220 (440)
..+..|...+++.+|.++-+.
T Consensus 883 aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 883 AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 234556666777777666544
No 223
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.22 E-value=0.13 Score=45.33 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=51.2
Q ss_pred cccccccccCChhhHHHHhhhcCCCCh---HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHh
Q 039362 2 LSFSALSYLGNIDYSCKVLSHLSNPRI---FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS 73 (440)
Q Consensus 2 ~~~y~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 73 (440)
|+-|... |..++.+++++.+..|-+ .+|...+++-...+++.....+|.+...... +...|..-+..-
T Consensus 49 iq~~~tq--~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl~YI 119 (660)
T COG5107 49 IQYLETQ--ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYLEYI 119 (660)
T ss_pred HHHHhhh--hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHHHHH
Confidence 3445555 889999999999987654 4798889888888999999999999887643 445555555443
No 224
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.21 E-value=0.086 Score=42.98 Aligned_cols=172 Identities=17% Similarity=0.137 Sum_probs=91.5
Q ss_pred HhcCCHHHHHHHHhhhhhcCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCccHhhHHHHHHHHHc-----
Q 039362 241 AKCGAIKEALIVFHGVEKHQSD----VLIWNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDEITFLGLLSACAH----- 310 (440)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~----- 310 (440)
.+.|++++|.+.|+.+....|. ..+.-.++-++.+.++++.|+...++..... -.|| .-|...+.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 4567777777777777655442 2233445556667777777777777766543 2222 234444444432
Q ss_pred --CCChHH---HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccH--hHHHHHHHHHHhcCChhH
Q 039362 311 --GGLVME---AWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA--SMLGSLLTGCMNHGKLDL 383 (440)
Q Consensus 311 --~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 383 (440)
..+... |..-|+.++.. -||..- ...|...+..+. |. ..=..+.+-|.+.|.+..
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r--yPnS~Y-------------a~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR--YPNSRY-------------APDAKARIVKLN---DALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH--CCCCcc-------------hhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHH
Confidence 122222 33333333332 122110 011111111000 00 011245566888888888
Q ss_pred HHHHHHHHHhcCCCCCc---hHHHHHHHHHhccChHHHHHHHHHHHhcCCcc
Q 039362 384 AEIVGKKLVELQPDHDG---RYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432 (440)
Q Consensus 384 a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 432 (440)
|..-++.+++.-|..+. .+..+..+|...|-.++|.+.-+-+ ..+.+.
T Consensus 186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl-~~N~p~ 236 (254)
T COG4105 186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL-GANYPD 236 (254)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH-HhcCCC
Confidence 98889988887666554 4566777888888888887765443 444433
No 225
>PRK15331 chaperone protein SicA; Provisional
Probab=97.15 E-value=0.027 Score=42.56 Aligned_cols=92 Identities=11% Similarity=-0.050 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 039362 165 ALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244 (440)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 244 (440)
....-+...|++++|..+|.-+...+ .-+..-+..|..++-..+++++|...|......+ ..|+..+-....+|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 34445566777777777777766543 2334444555666666777777777777765554 344455555677777777
Q ss_pred CHHHHHHHHhhhhh
Q 039362 245 AIKEALIVFHGVEK 258 (440)
Q Consensus 245 ~~~~A~~~~~~~~~ 258 (440)
+.+.|+..|..+..
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 77777777777664
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.14 E-value=0.021 Score=43.32 Aligned_cols=69 Identities=25% Similarity=0.311 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc-----CCCCCcch
Q 039362 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-----GMVPKSEH 335 (440)
Q Consensus 266 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 335 (440)
...++..+...|++++|..+.+.+.... +.+...+..++.++...|+...|.+.|+++... |+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555566666666666666666553 445556666666666666666666666655432 55555444
No 227
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.13 E-value=0.015 Score=42.83 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=61.7
Q ss_pred HHHHHhcCCHHHHHHHHhcC----CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch---HHHHHHHHHh
Q 039362 340 VDALSRAGQVTEAYEFICQM----PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR---YVGLSNVYAI 411 (440)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~ 411 (440)
.....+.|++++|.+.|+.+ +..| ....-..++.++.+.|++++|...+++.++++|.++.+ +...+.++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 44456778888888888877 1122 22445567888889999999999999999999887763 3344444445
Q ss_pred ccC---------------hHHHHHHHHHHHhc
Q 039362 412 FKR---------------WDEARTTREAMETR 428 (440)
Q Consensus 412 ~g~---------------~~~A~~~~~~~~~~ 428 (440)
... ..+|..-|+++++.
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 444 66788888887764
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.06 Score=43.27 Aligned_cols=204 Identities=15% Similarity=0.135 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 039362 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240 (440)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 240 (440)
..|..-..+|...+++++|...+.+..+. ..-+...|. ..+.++.|..+.+++.+. +.-...++.-...|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555556666666777766666555421 111111111 112234444444444332 22233445555666
Q ss_pred HhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CccH---hhHHHHHHHHHcCCChH
Q 039362 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI--TPDE---ITFLGLLSACAHGGLVM 315 (440)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~---~~~~~l~~~~~~~~~~~ 315 (440)
..+|..+.|-..+++.-+ .....++++|++++++....-. ..+. .-+...-+.+.+...+.
T Consensus 102 ~E~GspdtAAmaleKAak--------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK--------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred HHhCCcchHHHHHHHHHH--------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 666666666555554432 1223345555555554322100 0111 12233334455555665
Q ss_pred HHHHHHHHHhhc--CC--CCC-cchHHHHHHHHHhcCCHHHHHHHHhcC---C--C-CccHhHHHHHHHHHHhcCChhHH
Q 039362 316 EAWYFFKSLGKR--GM--VPK-SEHYACMVDALSRAGQVTEAYEFICQM---P--L-EPTASMLGSLLTGCMNHGKLDLA 384 (440)
Q Consensus 316 ~a~~~~~~~~~~--~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~---~--~-~p~~~~~~~l~~~~~~~g~~~~a 384 (440)
+|-..+.+-... .+ -++ -..|-..|-.+....++..|...++.- + . .-+..+...|+.+| ..||.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 555544433221 00 111 112344444555566777777777663 1 1 12445566666665 45666655
Q ss_pred HHHHH
Q 039362 385 EIVGK 389 (440)
Q Consensus 385 ~~~~~ 389 (440)
..++.
T Consensus 247 ~kvl~ 251 (308)
T KOG1585|consen 247 KKVLS 251 (308)
T ss_pred HHHHc
Confidence 55443
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.07 E-value=0.0013 Score=43.61 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=37.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcC-------C-CCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039362 335 HYACMVDALSRAGQVTEAYEFICQM-------P-LEPT-ASMLGSLLTGCMNHGKLDLAEIVGKKLVEL 394 (440)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 394 (440)
+++.+...|...|++++|++.+++. + ..|+ ..++..+..++...|++++|++.++++.+.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455555666666666666655554 1 1122 356677778888888888888888877653
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.0064 Score=49.75 Aligned_cols=98 Identities=19% Similarity=0.191 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhcCC--CCCcchHHHHHHHHHhcCCHHHHHHHHhcC----CCCc-cHhHHHHHHH
Q 039362 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGM--VPKSEHYACMVDALSRAGQVTEAYEFICQM----PLEP-TASMLGSLLT 373 (440)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~p-~~~~~~~l~~ 373 (440)
|+.-+..+ +.|++..|..-|...++... .-....+..|..++...|++++|..+|..+ +-.| -+..+..|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44443332 33445555555555555410 111222333445555555555554444444 1111 1233444444
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCC
Q 039362 374 GCMNHGKLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (440)
+..+.|+.++|...|+++.+..|..+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 44445555555555555555444443
No 231
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.05 E-value=0.014 Score=41.70 Aligned_cols=141 Identities=15% Similarity=0.130 Sum_probs=81.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 039362 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352 (440)
Q Consensus 273 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 352 (440)
+.-.|..++..++..+.... .+..-++.++--....-+=+-..+.++.+-+- .|.. .+|+....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHH
Confidence 34468888888888887753 34445666554444333444444444444332 2211 22333333
Q ss_pred HHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCCc
Q 039362 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431 (440)
Q Consensus 353 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 431 (440)
...+-.++ .+.......+..+..+|+-+.-.+++..+.+.+..+|..+..++.+|.+.|+..++.+++.+.-+.|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333332 234455666777889999999999999988877778889999999999999999999999999988874
No 232
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.02 E-value=0.15 Score=42.26 Aligned_cols=222 Identities=23% Similarity=0.182 Sum_probs=120.9
Q ss_pred CCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcCCHHHHHH
Q 039362 174 GDYKEALVIFEEMRDVGSKA-NEVTLVSVLCACAHLGALDQGRMMLRYMIDK-GLSLTLPLQTSLIDMYAKCGAIKEALI 251 (440)
Q Consensus 174 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 251 (440)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 45555555555554442111 2455555666666777777777776666542 224445555666666666677777777
Q ss_pred HHhhhhhcCCch-hhHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCc----cHhhHHHHHHHHHcCCChHHHHHHHHHHh
Q 039362 252 VFHGVEKHQSDV-LIWNAMIG-GLAMHGFVKESLELFTEMQIVGITP----DEITFLGLLSACAHGGLVMEAWYFFKSLG 325 (440)
Q Consensus 252 ~~~~~~~~~~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 325 (440)
.+.......++. ........ .+...|+++.+...+.+.... .| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 777766543332 22222222 566677777777777776442 22 22233333333445566667776666666
Q ss_pred hcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 039362 326 KRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPT-ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397 (440)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 397 (440)
..........+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 5421112344555556666666666666666665 33333 233333444444555566666666666666655
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0052 Score=53.00 Aligned_cols=126 Identities=15% Similarity=0.094 Sum_probs=95.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhc-C----CCC---------CcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHh
Q 039362 303 GLLSACAHGGLVMEAWYFFKSLGKR-G----MVP---------KSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TAS 366 (440)
Q Consensus 303 ~l~~~~~~~~~~~~a~~~~~~~~~~-~----~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~ 366 (440)
.-...+.+.|++..|..-|+++... + ..+ -..++..+..++.+.+++.+|++..++. ...| |..
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 3456778899999999999986653 1 111 1234667788888999999999988887 4444 566
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHH-HHHHHHHHHhc
Q 039362 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE-ARTTREAMETR 428 (440)
Q Consensus 367 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 428 (440)
.+..=..++...|+++.|+..|+++++..|.|..+-..+..+-.+..++.+ ..++|..|...
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666778889999999999999999999999998777777777666655544 47888888765
No 234
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.75 E-value=0.18 Score=39.94 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 401 RYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 401 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
+|.-++.-+...|+.++|..+|+-.+.
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 444555555555555555555554443
No 235
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.69 E-value=0.39 Score=42.22 Aligned_cols=98 Identities=12% Similarity=0.127 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 039362 165 ALIDGYVKCGDYKEALVIFEEMRDVG---SKANEVTLVSVLCACAH---LGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238 (440)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (440)
.++-+|....+++...++++.+.... +.-....-....-++.+ .|+.++|.+++..++.....+++.++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445666666666666666665431 11111111222333444 5666666666666544444566666665555
Q ss_pred HHHh---------cCCHHHHHHHHhhhhhcCCc
Q 039362 239 MYAK---------CGAIKEALIVFHGVEKHQSD 262 (440)
Q Consensus 239 ~~~~---------~g~~~~A~~~~~~~~~~~~~ 262 (440)
.|-. ....++|+..|.+.-+..|+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 5432 11255566666655544443
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.69 E-value=0.049 Score=44.79 Aligned_cols=91 Identities=21% Similarity=0.225 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcC-C------CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---chHHH
Q 039362 335 HYACMVDALSRAGQVTEAYEFICQM-P------LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD---GRYVG 404 (440)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~-~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~ 404 (440)
.|+.-+. +.+.|++.+|...|... . ..|+..-| |..++...|++++|..+|..+.+..|.++ ..+..
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4554444 34556677777777665 1 22333333 66777777777777777777777665543 45677
Q ss_pred HHHHHHhccChHHHHHHHHHHHhc
Q 039362 405 LSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 405 l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
++.+..+.|+.++|...|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777777777777777777654
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=96.68 E-value=0.1 Score=46.52 Aligned_cols=108 Identities=13% Similarity=0.023 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccH-hHHHHHHHHHHhcCChhHHHHHHHH
Q 039362 313 LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTA-SMLGSLLTGCMNHGKLDLAEIVGKK 390 (440)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 390 (440)
+..+|.+.-++..+.+ .-|......+..+....++++.|..+|++. .+.||. .+|......+.-.|+.++|.+.+++
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445566666666654 235666666666667777788888888877 566654 4555555566677888888888888
Q ss_pred HHhcCCCCCch--HHHHHHHHHhccChHHHHHHH
Q 039362 391 LVELQPDHDGR--YVGLSNVYAIFKRWDEARTTR 422 (440)
Q Consensus 391 ~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~ 422 (440)
+.+++|....+ .-..++.|+.. ..++|.+++
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 88887766543 22233345444 355666555
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.034 Score=48.18 Aligned_cols=64 Identities=8% Similarity=-0.034 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc
Q 039362 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262 (440)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 262 (440)
+..+..++.+.+++..|++.....+..+ +++....-.-..++...|+++.|+..|+++.+..|+
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 3344445555555555555555555544 444444444455555555555555555555555553
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.59 E-value=0.029 Score=40.14 Aligned_cols=51 Identities=20% Similarity=0.130 Sum_probs=24.7
Q ss_pred HHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC
Q 039362 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 308 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (440)
....|+.+.|++.|.+.+..- +-....||.-.+++.-.|+.++|++-+++.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 344455555555555544421 113444555555555555555555555444
No 240
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.58 E-value=0.055 Score=46.15 Aligned_cols=224 Identities=14% Similarity=0.026 Sum_probs=113.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHH----HHHcCC-CCchhhHHHHHHHHHh
Q 039362 170 YVKCGDYKEALVIFEEMRDVG--SKANEVTLVSVLCACAHLGALDQGRMMLRY----MIDKGL-SLTLPLQTSLIDMYAK 242 (440)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~-~~~~~~~~~l~~~~~~ 242 (440)
+....+.++|+..+.+-...- ..--..++..+..+.+..|.++++...--- ..+..- ..-...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888777665431 111224566666777777777766543221 111110 0111234444444544
Q ss_pred cCCHHHHHHHHhhhhhc---CC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----ccHhhHHHHHHHHHcC
Q 039362 243 CGAIKEALIVFHGVEKH---QS---DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGIT-----PDEITFLGLLSACAHG 311 (440)
Q Consensus 243 ~g~~~~A~~~~~~~~~~---~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~l~~~~~~~ 311 (440)
.-++.+++.+-+.-... .| .....-++..++...+.++++++.|+.....-.. .....+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44555555444433322 11 1122334555666667777777777765432111 1124566677777777
Q ss_pred CChHHHHHHHHHHhhc----CCCCCcchHH-----HHHHHHHhcCCHHHHHHHHhcC-------CCCc-cHhHHHHHHHH
Q 039362 312 GLVMEAWYFFKSLGKR----GMVPKSEHYA-----CMVDALSRAGQVTEAYEFICQM-------PLEP-TASMLGSLLTG 374 (440)
Q Consensus 312 ~~~~~a~~~~~~~~~~----~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~-------~~~p-~~~~~~~l~~~ 374 (440)
.++++|.-+..+..+. ++..-...|. .+.-++...|+.-.|.+..++. |-+| .......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 7777777666655443 2111111122 2333455566655555555543 2222 12334455566
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 039362 375 CMNHGKLDLAEIVGKKLVE 393 (440)
Q Consensus 375 ~~~~g~~~~a~~~~~~~~~ 393 (440)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 6677777776666666543
No 241
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.56 E-value=0.62 Score=42.93 Aligned_cols=382 Identities=13% Similarity=0.107 Sum_probs=218.2
Q ss_pred ChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcc-hHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 039362 27 RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHL-TYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLI 105 (440)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (440)
+...|+.++.---.....+.+..++..+... .|-.. -|......=.+.|..+.+.++|++.+.. ++.+...+....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3446777776555555666777777777754 34433 4566666667788899999999998865 556677776655
Q ss_pred HHHH-hcCCHHHHHHHhhCCCC------CchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHH---hc--
Q 039362 106 HMYG-SCGDIVYAREVFDGMPT------KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYV---KC-- 173 (440)
Q Consensus 106 ~~~~-~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~---~~-- 173 (440)
..+. ..|+.+.....|+.... .....|...+.--..++++.....+++++.+-....|+..-..|. ..
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence 5443 45777777778876654 244568888888888889999999998887633332222222221 11
Q ss_pred ----CCHHHHHHHHHHHHh--------------------cCCCCCHH--HHHHHHHH-------HHhcCChHHHHHHHHH
Q 039362 174 ----GDYKEALVIFEEMRD--------------------VGSKANEV--TLVSVLCA-------CAHLGALDQGRMMLRY 220 (440)
Q Consensus 174 ----~~~~~a~~~~~~~~~--------------------~~~~~~~~--~~~~l~~~-------~~~~~~~~~a~~~~~~ 220 (440)
...+++.++-..... .+.+.+.. ..+.+... +............++.
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~ 280 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEE 280 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhh
Confidence 122222222221111 00000000 01111111 1111111122222222
Q ss_pred HHHcC-------CCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039362 221 MIDKG-------LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH-QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292 (440)
Q Consensus 221 ~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 292 (440)
-.+.. .++....|...+..-.+.|+.+...-+|++..-- ..-...|-..+.-....|+.+-|..++....+-
T Consensus 281 ~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 281 GIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred hccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 22211 1223456777777888889999999888887621 112334544555555558888888887776554
Q ss_pred CCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcc-hHHHHHHHHHhcCCHHHHH---HHHhcC-CCCccHhH
Q 039362 293 GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSE-HYACMVDALSRAGQVTEAY---EFICQM-PLEPTASM 367 (440)
Q Consensus 293 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~-~~~p~~~~ 367 (440)
.++..+.+-..-...+-..|++..|..+++.+.+.- |+.. .-..-+....+.|..+.+. +++... ...-+..+
T Consensus 361 ~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i 438 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGI 438 (577)
T ss_pred cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcch
Confidence 433332222111222345689999999999988753 4322 2222344456777777777 444433 22223333
Q ss_pred HHHHHHH-----HHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc
Q 039362 368 LGSLLTG-----CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413 (440)
Q Consensus 368 ~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 413 (440)
...+..- +.-.++.+.|..++.++.+..|++...|..++......+
T Consensus 439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 439 LEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 3333222 334678999999999999999999888888888776655
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.54 E-value=0.3 Score=44.54 Aligned_cols=157 Identities=14% Similarity=0.163 Sum_probs=87.6
Q ss_pred HHHHccCChhhHHHHHHHHH-HcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 039362 36 RGYSKSKNPNKSISLFVKML-RAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114 (440)
Q Consensus 36 ~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 114 (440)
....-+|+++++.++.+.-. -..++ ......++..+.+.|.++.|+++.. |+. .-.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCH
Confidence 33455677777766664211 11121 3346777777778888887777432 322 234455677888
Q ss_pred HHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 039362 115 VYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN 194 (440)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 194 (440)
+.|.++.++.. +...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~---- 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG---- 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc----
Confidence 88888877665 445777777777777777777777777653 4455556666777766666666655554
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHH
Q 039362 195 EVTLVSVLCACAHLGALDQGRMMLR 219 (440)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~a~~~~~ 219 (440)
-++....++.-.|+.++..+++.
T Consensus 404 --~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 --DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHH
T ss_pred --CHHHHHHHHHHcCCHHHHHHHHH
Confidence 23333444445566666665554
No 243
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.52 E-value=0.1 Score=46.54 Aligned_cols=61 Identities=8% Similarity=-0.130 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch---hhHHHHHHHHHhcCCHHHHHHHHhhhh
Q 039362 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTL---PLQTSLIDMYAKCGAIKEALIVFHGVE 257 (440)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 257 (440)
..+..+..+|...|++++|...|++.++.+ +.+. .+|..+..+|...|+.++|+..+++..
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444445555555555555555544443 2112 224445555555555555555555444
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.47 E-value=0.4 Score=39.58 Aligned_cols=196 Identities=22% Similarity=0.140 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhhhh--c-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHH-
Q 039362 231 PLQTSLIDMYAKCGAIKEALIVFHGVEK--H-QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS- 306 (440)
Q Consensus 231 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~- 306 (440)
.........+...+++..+...+..... . ......+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 4444455555555555555555555442 1 2233344444444445555555555555554432221 111111111
Q ss_pred HHHcCCChHHHHHHHHHHhhcCC--CCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc--HhHHHHHHHHHHhcCCh
Q 039362 307 ACAHGGLVMEAWYFFKSLGKRGM--VPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPT--ASMLGSLLTGCMNHGKL 381 (440)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~ 381 (440)
.+...|+++.+...+.+...... ......+......+...++.+.+...+.+. ...++ ...+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 34455555555555555533110 011122222233344455555555555554 22222 34444455555555555
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 382 DLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 382 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
+.|...+.......|.....+......+...|..+++...+++...
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555554333444444444444445555555554443
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.42 E-value=0.21 Score=46.17 Aligned_cols=116 Identities=16% Similarity=-0.007 Sum_probs=79.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCcchHH-HHHHHHHhcCCHHHHHHHHhcCC-C-----CccHhHHHHHHHHHHhcCChhH
Q 039362 311 GGLVMEAWYFFKSLGKRGMVPKSEHYA-CMVDALSRAGQVTEAYEFICQMP-L-----EPTASMLGSLLTGCMNHGKLDL 383 (440)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~-~-----~p~~~~~~~l~~~~~~~g~~~~ 383 (440)
..+.+.|.+++..+.+. -|+...|. .-.+.+...|++++|++.|++.. . +.....+-.++..+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45667788888888774 35555543 33456667888888888888651 1 1123445566777788889999
Q ss_pred HHHHHHHHHhcCCCCCchHH-HHHHHHHhccCh-------HHHHHHHHHHHhc
Q 039362 384 AEIVGKKLVELQPDHDGRYV-GLSNVYAIFKRW-------DEARTTREAMETR 428 (440)
Q Consensus 384 a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~~~ 428 (440)
|...|.++.+.+.-+..+|. ..+.++...|+. ++|.+++.++...
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999887755555544 344555667888 8888888877654
No 246
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.40 E-value=0.2 Score=45.57 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=101.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 039362 168 DGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247 (440)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 247 (440)
....-.++++++.+..+.-.-.. ..+......++.-+.+.|.++.|.++.. |+. .-.+...+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHH
Confidence 34455778888776665211000 1124456677777788888888877633 221 1234456778888
Q ss_pred HHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 039362 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327 (440)
Q Consensus 248 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 327 (440)
.|.++.+... +...|..|.....+.|+++-|++.|++..+ |..|+-.|.-.|+.+.-.++.+.....
T Consensus 336 ~A~~~a~~~~----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 336 IALEIAKELD----DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHCCCCS----THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhcC----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 8888776544 566889999999999999999888886442 455555667778887777777766665
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccH
Q 039362 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA 365 (440)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~ 365 (440)
| -++....++.-.|+.++..+++.+.+..|..
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A 434 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIETGRLPEA 434 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT-HHHH
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHcCCchHH
Confidence 4 2556666777788888888888877654443
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.24 Score=41.99 Aligned_cols=148 Identities=11% Similarity=-0.048 Sum_probs=89.2
Q ss_pred hcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHH----HHHHHHHcCCChHH
Q 039362 242 KCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL----GLLSACAHGGLVME 316 (440)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~~~~~~ 316 (440)
-.|+..+|-..++++.+..| |...+..--.++...|+.+.-...+++.... ..|+...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45666666666777666545 5666666667777777777777777776643 133332222 22333456777788
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCc------cHhHHHHHHHHHHhcCChhHHHHHHHH
Q 039362 317 AWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP------TASMLGSLLTGCMNHGKLDLAEIVGKK 390 (440)
Q Consensus 317 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 390 (440)
|++.-++..+.+ +.|.-...++...+.-.|++.++.++..+-.-.. -...|-...-.+...+.++.|+++|++
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 877777776643 2244455566666777778888877777652111 112233444445566777888877765
Q ss_pred H
Q 039362 391 L 391 (440)
Q Consensus 391 ~ 391 (440)
=
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=96.39 E-value=0.054 Score=48.23 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=84.2
Q ss_pred ChHHHHHHHHHHhhc-CCCCC-cchHHHHHHHHHh---------cCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcC
Q 039362 313 LVMEAWYFFKSLGKR-GMVPK-SEHYACMVDALSR---------AGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHG 379 (440)
Q Consensus 313 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 379 (440)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++.++. .+.| |+.....+..+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 345666777777622 23343 2333333333221 22344566666665 4444 5666777777778888
Q ss_pred ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 380 KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
+++.|...|+++..++|+...+|...+..+.-.|+.++|.+.+++..+..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 899999999999999999999999999999999999999999999777654
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.51 Score=39.47 Aligned_cols=121 Identities=13% Similarity=0.120 Sum_probs=54.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 039362 169 GYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248 (440)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 248 (440)
.....|++.+|...|....... +-+......++.++...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3445555666666555554442 222334444555555666666666665554332211111111222333333333333
Q ss_pred HHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039362 249 ALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQI 291 (440)
Q Consensus 249 A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 291 (440)
...+-.+... .| |...--.+...+...|+.+.|.+.+-.+..
T Consensus 222 ~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333222 23 444444555555556666666555554443
No 250
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.31 E-value=0.048 Score=39.78 Aligned_cols=48 Identities=8% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc-CCCCCcchHHHHHH
Q 039362 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVPKSEHYACMVD 341 (440)
Q Consensus 294 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 341 (440)
..|+..++..++.+|+..+++..|.++++...+. +++.+..+|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3455555555555555555555555555555554 44444444444444
No 251
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.27 E-value=0.27 Score=35.53 Aligned_cols=137 Identities=17% Similarity=0.147 Sum_probs=71.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhh---HHHHHHHHHhcCCHH
Q 039362 171 VKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPL---QTSLIDMYAKCGAIK 247 (440)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~ 247 (440)
.-.|..++..++..+...+. +..-++.++--....-+-+-..+.++.+-+ ..|... ...++.+|...|
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n--- 83 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRN--- 83 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhc---
Confidence 34566777777777665432 333444444333333333333444443322 222222 133344444332
Q ss_pred HHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 039362 248 EALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327 (440)
Q Consensus 248 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 327 (440)
.+.......+..+...|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++.+.
T Consensus 84 -------------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 84 -------------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred -------------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 233444555667777888888888888776543 677777778888888888888888888888887
Q ss_pred CCC
Q 039362 328 GMV 330 (440)
Q Consensus 328 ~~~ 330 (440)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 753
No 252
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.26 E-value=0.013 Score=31.11 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 039362 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398 (440)
Q Consensus 367 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 398 (440)
.+..+...+...|++++|++.++++++++|.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566667777777777777777777777654
No 253
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.26 E-value=0.078 Score=38.69 Aligned_cols=98 Identities=17% Similarity=0.170 Sum_probs=63.9
Q ss_pred cHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccHhHHHHHHHHH
Q 039362 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTASMLGSLLTGC 375 (440)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~l~~~~ 375 (440)
|..++..++.++++.|+.+....+++..- |+.++... ..+. +..- +..|+..++.+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 45677778888888888877777765443 22222110 0000 2222 5678888888999999
Q ss_pred HhcCChhHHHHHHHHHHhcCC--CCCchHHHHHHHHHhc
Q 039362 376 MNHGKLDLAEIVGKKLVELQP--DHDGRYVGLSNVYAIF 412 (440)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 412 (440)
+..|++..|.++.+...+..| -+..+|..|+.-....
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 889999999999988888763 3344677766655443
No 254
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.21 E-value=0.051 Score=44.64 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=83.3
Q ss_pred HHHhhhcC--CCChHHHHHHHHHHHc-----cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhch-------------
Q 039362 17 CKVLSHLS--NPRIFYWNTVIRGYSK-----SKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRL------------- 76 (440)
Q Consensus 17 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------- 76 (440)
+..|+.++ +.|-.+|...+..+.. .+..+-....++.|.+-|+..|..+|+.|++.+-+-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44556555 5677788888877654 466777778888999999999999999999986543
Q ss_pred ---hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH-HHHHHHhhCCC
Q 039362 77 ---AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI-VYAREVFDGMP 125 (440)
Q Consensus 77 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 125 (440)
.+-+-+++++++|...|+.||-.+-..|+.++.+.+.. .+..++.-.|+
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 22355889999999999999999999999999988753 33444444443
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.17 E-value=0.011 Score=31.49 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 039362 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397 (440)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 397 (440)
.+|..++..+...|++++|+..|+++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45667777777777777777777777777765
No 256
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.12 E-value=0.32 Score=37.28 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039362 163 WSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223 (440)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (440)
+..++..+...|++-+|+++.+...... ......++.+..+.+|...-..+++-..+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555666666666666655542211 11223344555555555555555554444
No 257
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.56 Score=37.74 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=14.2
Q ss_pred HhcCChhHHHHHHHHHHhcCCCC
Q 039362 376 MNHGKLDLAEIVGKKLVELQPDH 398 (440)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~~~~~~ 398 (440)
+..+++.+|+.+|+++....-++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 35666777777777766654433
No 258
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.09 E-value=0.2 Score=37.04 Aligned_cols=117 Identities=15% Similarity=0.021 Sum_probs=71.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC--CccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 039362 269 MIGGLAMHGFVKESLELFTEMQIVGI--TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA 346 (440)
Q Consensus 269 l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (440)
-.....+.|++++|.+.|+.+...-. +-....-..++.++.+.+++++|...+++.++........-|...+.+++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34455677888888888888876521 1123456677788888888888888888888874333334455555555544
Q ss_pred CCHHHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 039362 347 GQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400 (440)
Q Consensus 347 ~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (440)
...+..+.-+- +.+- ..+....|..-|+++++..|++..
T Consensus 96 ~~~~~~~~~~~--~~dr-------------D~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSDR-------------DPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHhhhHHhhhc--cccc-------------CcHHHHHHHHHHHHHHHHCcCChh
Confidence 33332222111 1111 122345788888888888888753
No 259
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.77 Score=38.46 Aligned_cols=140 Identities=15% Similarity=0.128 Sum_probs=90.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCch--hhHHHHHHHHHhcCChH
Q 039362 203 CACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV--LIWNAMIGGLAMHGFVK 280 (440)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 280 (440)
......|++.+|...|+...... +.+......++.+|...|+.+.|..++..+.....+. .....-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34567899999999999988876 5556777889999999999999999999987543322 22223344444444444
Q ss_pred HHHHHHHHHHHcCCCc-cHhhHHHHHHHHHcCCChHHHHHHHHHHhhc--CCCCCcchHHHHHHHHHhcC
Q 039362 281 ESLELFTEMQIVGITP-DEITFLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAG 347 (440)
Q Consensus 281 ~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 347 (440)
+...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..++..+.-.|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 44444444333 34 5555566677777788888888777666665 322 3444444555444444
No 260
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=0.5 Score=36.02 Aligned_cols=52 Identities=13% Similarity=0.011 Sum_probs=21.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhh
Q 039362 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326 (440)
Q Consensus 275 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 326 (440)
..|.++......+.+...+-+-....-..|.-+-.+.|++..|...|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3444444444444443332222222223333334445555555555555444
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.92 E-value=0.49 Score=35.50 Aligned_cols=125 Identities=9% Similarity=0.011 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 039362 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA 346 (440)
Q Consensus 267 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (440)
..++..+...+........++.+...+ ..+....+.++..|++.+ ..+....++. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 445555555566666666666666554 344555666666665542 2333333331 12333344466666666
Q ss_pred CCHHHHHHHHhcCCCCccHhHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 039362 347 GQVTEAYEFICQMPLEPTASMLGSLLTGCMNH-GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410 (440)
Q Consensus 347 ~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (440)
+.++++.-++.+++...+ .+..+... ++++.|.+++.+ +.++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~~~~------Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGNFKD------AIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcCHHH------HHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 666677776666643211 11222222 666666666664 224445555554443
No 262
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.89 E-value=1.2 Score=39.69 Aligned_cols=149 Identities=13% Similarity=-0.010 Sum_probs=80.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---cHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCC--cchH
Q 039362 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP---DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPK--SEHY 336 (440)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 336 (440)
...+|..++..+.+.|.++.|...+..+...+..+ .+.....-.......|+..+|+..++......+..+ ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 45567777778888888888888888777643111 223333344555667888888888887776321111 1111
Q ss_pred HHHHHHHHhcCCHHHHHHH-HhcCCCCccHhHHHHHHHHHHhc------CChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039362 337 ACMVDALSRAGQVTEAYEF-ICQMPLEPTASMLGSLLTGCMNH------GKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409 (440)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (440)
..+...... ..+..... ........-...+..+..-+... ++.+++...|.++.+..|.....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 00000001112333333333344 7888899999999999988888888777776
Q ss_pred Hhc
Q 039362 410 AIF 412 (440)
Q Consensus 410 ~~~ 412 (440)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 553
No 263
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.88 E-value=0.077 Score=43.64 Aligned_cols=99 Identities=19% Similarity=0.196 Sum_probs=70.2
Q ss_pred HHHHhhhhhcCCchhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcC-------------
Q 039362 250 LIVFHGVEKHQSDVLIWNAMIGGLAM-----HGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG------------- 311 (440)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------------- 311 (440)
...|..+.....|-.+|-..+..+.. .+.++-....++.|.+.|+.-|..+|..|+..+-+.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 33444444334456666666666643 355666667778888889998999999888876543
Q ss_pred ---CChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC
Q 039362 312 ---GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQ 348 (440)
Q Consensus 312 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (440)
.+-+-++.++++|...|+.||..+-..|+.++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2234577888888888988998888888888887765
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.87 E-value=1.4 Score=40.87 Aligned_cols=161 Identities=17% Similarity=0.073 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCH-----HHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhh
Q 039362 163 WSALIDGYVKCGDYKEALVIFEEMRDVG-SKANE-----VTLVSVLCACAH----LGALDQGRMMLRYMIDKGLSLTLPL 232 (440)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (440)
...++....=.|+-+.+++.+.+..+.+ +.-.. -.|..++..++. ..+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3445555566788888888887765533 22111 123333433332 34667788888888776 344444
Q ss_pred H-HHHHHHHHhcCCHHHHHHHHhhhhhcCC-----chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHH
Q 039362 233 Q-TSLIDMYAKCGAIKEALIVFHGVEKHQS-----DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306 (440)
Q Consensus 233 ~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 306 (440)
| -.-...+...|++++|++.|++....+. ....+--+.-.+.-.++|++|.+.|..+.+.. .-+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 4 3345667778888888888887553211 22334445556677788888888888888753 223344444433
Q ss_pred HH-HcCCCh-------HHHHHHHHHHhh
Q 039362 307 AC-AHGGLV-------MEAWYFFKSLGK 326 (440)
Q Consensus 307 ~~-~~~~~~-------~~a~~~~~~~~~ 326 (440)
+| ...++. ++|.++|.++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33 345555 777777776644
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.80 E-value=0.87 Score=37.40 Aligned_cols=79 Identities=13% Similarity=-0.071 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHcCCCC---CcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 039362 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP---DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLI 105 (440)
Q Consensus 29 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 105 (440)
..|+.- ..-.+.|++++|.+.|+.+.... +- ...+...++.++-+.++++.|+..+++....-+.....-|..-|
T Consensus 36 ~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 36 ELYNEG-LTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 345543 34567899999999999888652 22 23445666777888899999999988888875443334455555
Q ss_pred HHHH
Q 039362 106 HMYG 109 (440)
Q Consensus 106 ~~~~ 109 (440)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 5544
No 266
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.77 E-value=0.041 Score=42.68 Aligned_cols=99 Identities=19% Similarity=0.107 Sum_probs=61.3
Q ss_pred HHHcCCChHHHHHHHHHHhhcCCCCCc------chHHHHHHHHHhcCCHHHHHHHHhcC-CCCccH-hHHHHHHHHHHhc
Q 039362 307 ACAHGGLVMEAWYFFKSLGKRGMVPKS------EHYACMVDALSRAGQVTEAYEFICQM-PLEPTA-SMLGSLLTGCMNH 378 (440)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~ 378 (440)
-+.+.|++++|..-|..++..- |.. ..|..-..++.+.+.++.|+.-..+. .+.|.. ..+..-..+|-+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 4567788888888888877752 221 23444455666777777777766665 555532 2223334556677
Q ss_pred CChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 039362 379 GKLDLAEIVGKKLVELQPDHDGRYVGLSN 407 (440)
Q Consensus 379 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 407 (440)
.++++|++-|+++.+.+|.....-...+.
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 77788888888888777776644444333
No 267
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.77 E-value=3.8 Score=44.63 Aligned_cols=311 Identities=10% Similarity=0.002 Sum_probs=167.6
Q ss_pred HHHHHHHhcCCHHHHHHHhhCC----CCCc--hhhHHHHHHHHHhcCChHHHHHHHhh-CCCCchhhHHHHHHHHHhcCC
Q 039362 103 SLIHMYGSCGDIVYAREVFDGM----PTKM--SVSWNSMLDGYAKCGEMNMARQVFEL-MPERNVVSWSALIDGYVKCGD 175 (440)
Q Consensus 103 ~l~~~~~~~g~~~~a~~~~~~~----~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 175 (440)
.+..+-.+++.+..|...+++- .+.+ ...+..+...|...++.|....+... ..+++ .+. -+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s--l~~-qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS--LYQ-QILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc--HHH-HHHHHHhhcc
Confidence 4445666778888888888873 2211 12344444488888888888777763 33332 222 3445567899
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhH-HHHHHHHHhcCCHHHHHHHHh
Q 039362 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQ-TSLIDMYAKCGAIKEALIVFH 254 (440)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~ 254 (440)
+..|...|+.+.+.+ ++...+++-++......|.++...-..+-..... .+....+ +.-+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998774 4446677777777777788777776555544332 2222222 222344456667766665544
Q ss_pred hhhhcCCchhhHHHH--HHHHHhcCChH--HHHHHHHHHHHcCCCc---------cHhhHHHHHHHHHcCCChHHHHHHH
Q 039362 255 GVEKHQSDVLIWNAM--IGGLAMHGFVK--ESLELFTEMQIVGITP---------DEITFLGLLSACAHGGLVMEAWYFF 321 (440)
Q Consensus 255 ~~~~~~~~~~~~~~l--~~~~~~~~~~~--~a~~~~~~m~~~~~~p---------~~~~~~~l~~~~~~~~~~~~a~~~~ 321 (440)
..+..+|... +..+.+..+-+ .-.+..+.+++.-+.| -...|..++....-. +.+.-.
T Consensus 1543 -----~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~--- 1613 (2382)
T KOG0890|consen 1543 -----DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSI--- 1613 (2382)
T ss_pred -----cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHH---
Confidence 2233333332 33333222211 1112333332221111 012233333332211 111111
Q ss_pred HHHhhcCCCCCcc------hHHHHHHHHHhcCCHHHHHHHHhcC----CCCc-----cHhHHHHHHHHHHhcCChhHHHH
Q 039362 322 KSLGKRGMVPKSE------HYACMVDALSRAGQVTEAYEFICQM----PLEP-----TASMLGSLLTGCMNHGKLDLAEI 386 (440)
Q Consensus 322 ~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~----~~~p-----~~~~~~~l~~~~~~~g~~~~a~~ 386 (440)
+.+. +..++.. .|..-+..-....+..+-+--+++. ...| -..+|...++.....|+++.|..
T Consensus 1614 ~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1614 EELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111 1222211 1222211111111122211111111 1121 34678888888888999999998
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCCc
Q 039362 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431 (440)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 431 (440)
.+-.+.+..+ +..+.-.+..++..|+...|+.++++.++.+.+
T Consensus 1692 all~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1692 ALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 8888877773 447888899999999999999999999876553
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.70 E-value=1.2 Score=38.17 Aligned_cols=18 Identities=11% Similarity=-0.178 Sum_probs=12.4
Q ss_pred HHhcCChhHHHHHHHHHH
Q 039362 375 CMNHGKLDLAEIVGKKLV 392 (440)
Q Consensus 375 ~~~~g~~~~a~~~~~~~~ 392 (440)
+.+.++++.|...|+-..
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 446777888887777543
No 269
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.70 E-value=0.32 Score=37.02 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=60.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCccHh-hHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcc-hHHH--HHHHHHhcCCH
Q 039362 274 AMHGFVKESLELFTEMQIVGITPDEI-TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSE-HYAC--MVDALSRAGQV 349 (440)
Q Consensus 274 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~~~~ 349 (440)
.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-.. -... -.-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566677777777776655332111 11122223445667777777777766543223221 0111 11234456666
Q ss_pred HHHHHHHhcCCC--Cc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039362 350 TEAYEFICQMPL--EP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393 (440)
Q Consensus 350 ~~a~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 393 (440)
+......+.+.. .| ....-..|.-+-.+.|++..|.+.|.++..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666666665511 11 122233455555566777777777666655
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.69 E-value=0.045 Score=39.18 Aligned_cols=91 Identities=26% Similarity=0.220 Sum_probs=76.4
Q ss_pred HHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCc---hHHHHHHHHHhcc
Q 039362 340 VDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ-PDHDG---RYVGLSNVYAIFK 413 (440)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~g 413 (440)
.-++...|+.+.|++.|.+. .+-| ....||.-..++.-+|+.++|+.-+++++++. +.... .|..-+..|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34577899999999999987 4444 67889999999999999999999999999986 44322 4666778899999
Q ss_pred ChHHHHHHHHHHHhcCC
Q 039362 414 RWDEARTTREAMETRGV 430 (440)
Q Consensus 414 ~~~~A~~~~~~~~~~~~ 430 (440)
+-+.|+.=|+...+.|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999999988875
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.38 Score=40.88 Aligned_cols=152 Identities=11% Similarity=-0.013 Sum_probs=110.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc-CCchhhHHHH----HHHHHhcCChH
Q 039362 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH-QSDVLIWNAM----IGGLAMHGFVK 280 (440)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l----~~~~~~~~~~~ 280 (440)
-..|++.+|...++++++.- |.|...+...-.++.-.|+.+.-...++++... .++...|.-+ .-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35688888888899988764 788888888888999999999999999998755 6666555433 23445779999
Q ss_pred HHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc---CCCCCcchHHHHHHHHHhcCCHHHHHHHHh
Q 039362 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR---GMVPKSEHYACMVDALSRAGQVTEAYEFIC 357 (440)
Q Consensus 281 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (440)
+|++.-++..+.+ +.|.-.-..+...+...|+..++.++..+-... +.-.-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998887654 445555666777777889999999887765443 111111223344455667799999999998
Q ss_pred cC
Q 039362 358 QM 359 (440)
Q Consensus 358 ~~ 359 (440)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 65
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.56 E-value=0.98 Score=40.85 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=27.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHhhcCCC-CCcchHHHHHHHHHhcCCHHHHHHHHhcC
Q 039362 304 LLSACAHGGLVMEAWYFFKSLGKRGMV-PKSEHYACMVDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 304 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (440)
+..++.+.|+.++|++.++++.+.... .+..+...|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334444555555555555555543211 12223444555555555555555555554
No 273
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.45 E-value=0.051 Score=31.04 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhhhhcCC
Q 039362 234 TSLIDMYAKCGAIKEALIVFHGVEKHQS 261 (440)
Q Consensus 234 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 261 (440)
..+...|...|++++|+++|+++.+..|
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3444444444444444444444444433
No 274
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.40 E-value=1.6 Score=37.75 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=138.0
Q ss_pred HHhcCChHHHHHHHhhCCCC------chhhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCC---HHHHHHHHHHHHh
Q 039362 139 YAKCGEMNMARQVFELMPER------NVVSWSALIDGYVKCGDYKEALVIFEEMRDV--GSKAN---EVTLVSVLCACAH 207 (440)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 207 (440)
+....+.++|+..+.+.... ...++..+..+..+.|.+++++..--.-++. ...-+ -..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778888777665542 2346777788888888888876543222111 00111 1244555556666
Q ss_pred cCChHHHHHHHHHHHHc-CCCC---chhhHHHHHHHHHhcCCHHHHHHHHhhhhhc-----CC--chhhHHHHHHHHHhc
Q 039362 208 LGALDQGRMMLRYMIDK-GLSL---TLPLQTSLIDMYAKCGAIKEALIVFHGVEKH-----QS--DVLIWNAMIGGLAMH 276 (440)
Q Consensus 208 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~l~~~~~~~ 276 (440)
.-++.+++.+-..-... |..+ .-.....+..++...+.++++++.|+...+. .| ....+-.+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66666666665554432 1111 1123445677777888899999999987654 22 345788899999999
Q ss_pred CChHHHHHHHHHHHH----cCCCccHhhHH-----HHHHHHHcCCChHHHHHHHHHHhhc----CCCC-CcchHHHHHHH
Q 039362 277 GFVKESLELFTEMQI----VGITPDEITFL-----GLLSACAHGGLVMEAWYFFKSLGKR----GMVP-KSEHYACMVDA 342 (440)
Q Consensus 277 ~~~~~a~~~~~~m~~----~~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~ 342 (440)
.++++|.-...+..+ .++..-..-|. .+.-++...|..-.|.+.-++..+. |-.+ .......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999887776543 23222222333 3344566778888888887776654 3222 22334567788
Q ss_pred HHhcCCHHHHHHHHhcC
Q 039362 343 LSRAGQVTEAYEFICQM 359 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~~~ 359 (440)
|...|+.+.|..-|++.
T Consensus 256 yR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHhcccHhHHHHHHHHH
Confidence 88999999998888865
No 275
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.30 E-value=0.87 Score=34.13 Aligned_cols=44 Identities=11% Similarity=0.076 Sum_probs=23.8
Q ss_pred HHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 039362 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSC 111 (440)
Q Consensus 67 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (440)
..++..+...+.+......++.+...+. .+...++.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 3444555445555556666666555542 3555556666666544
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=1.4 Score=35.81 Aligned_cols=56 Identities=9% Similarity=0.155 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhc-CC--CCCcchHHHHHHHHHhcCCHHHHHHHHh
Q 039362 301 FLGLLSACAHGGLVMEAWYFFKSLGKR-GM--VPKSEHYACMVDALSRAGQVTEAYEFIC 357 (440)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (440)
|...|-.+....++..|...++.-.+. ++ .-+..+...|+.+| ..|+.+++..++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 444444555556677777666654333 11 11333445555554 3456666655554
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.15 E-value=0.59 Score=42.17 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcC-CCCcc---HhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCC
Q 039362 336 YACMVDALSRAGQVTEAYEFICQM-PLEPT---ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ-PDHD 399 (440)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~ 399 (440)
-..+..+..+.|+.++|++.++++ +..|. ..+...|+.++...+.+.++..++.+.-+.. |++.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence 345666677788888888888877 33332 2455677888888888888888888875543 4443
No 278
>PRK09687 putative lyase; Provisional
Probab=95.10 E-value=1.9 Score=36.86 Aligned_cols=137 Identities=12% Similarity=-0.017 Sum_probs=66.3
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchhhHHHH
Q 039362 158 RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG-ALDQGRMMLRYMIDKGLSLTLPLQTSL 236 (440)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 236 (440)
++..+-...+.++.+.++ +.+...+-.+.+ .++...-...+.++...+ +...+...+..+.. .++..+-...
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 344444444555555554 344444444443 233334444444444432 12344444444442 3445555556
Q ss_pred HHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHH
Q 039362 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308 (440)
Q Consensus 237 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 308 (440)
+.++.+.|+. .|...+-...+ .++ .....+.++...|.. +|+..+..+.+. .||...-...+.+|
T Consensus 213 ~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 213 IIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 6666666663 34444433332 222 233556666666664 577777766654 34555555555544
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.08 E-value=1.9 Score=36.86 Aligned_cols=21 Identities=24% Similarity=0.004 Sum_probs=16.1
Q ss_pred HHHHHhccChHHHHHHHHHHH
Q 039362 406 SNVYAIFKRWDEARTTREAME 426 (440)
Q Consensus 406 ~~~~~~~g~~~~A~~~~~~~~ 426 (440)
+..+.+.++|++|.+.++-..
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 445677899999999987543
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.06 E-value=0.05 Score=29.43 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhccChHHHHHHHHHHH
Q 039362 401 RYVGLSNVYAIFKRWDEARTTREAME 426 (440)
Q Consensus 401 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 426 (440)
++..++.+|.+.|++++|.+++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35678888888888888888888854
No 281
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.02 E-value=0.31 Score=40.86 Aligned_cols=77 Identities=12% Similarity=0.190 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCccHhhHHHH
Q 039362 231 PLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQI-----VGITPDEITFLGL 304 (440)
Q Consensus 231 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 304 (440)
.++..++..+...|+.+.+...++++....| +...|..+|.+|.+.|+...|+..|+.+.. .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4556677777778888888888888776666 677788888888888888888888877654 4677776665554
Q ss_pred HHH
Q 039362 305 LSA 307 (440)
Q Consensus 305 ~~~ 307 (440)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 282
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.93 E-value=4.8 Score=40.71 Aligned_cols=89 Identities=15% Similarity=0.149 Sum_probs=53.4
Q ss_pred CCCHHHHHH----HHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCch--hh
Q 039362 192 KANEVTLVS----VLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDV--LI 265 (440)
Q Consensus 192 ~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~ 265 (440)
.|+...+.. ....+...+.+++|.-.|+..-+. ...+.+|..+|+|++|+.+-.++... .+. .+
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~-~de~~~~ 1001 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG-KDELVIL 1001 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC-HHHHHHH
Confidence 445444433 334445566677776666554322 23466777788888888777766521 121 22
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 039362 266 WNAMIGGLAMHGFVKESLELFTEMQ 290 (440)
Q Consensus 266 ~~~l~~~~~~~~~~~~a~~~~~~m~ 290 (440)
-..|+.-+...+++-+|-++..+..
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHh
Confidence 3567777777888888887777654
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.90 E-value=0.051 Score=29.39 Aligned_cols=28 Identities=18% Similarity=0.075 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039362 367 MLGSLLTGCMNHGKLDLAEIVGKKLVEL 394 (440)
Q Consensus 367 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 394 (440)
+|..|...|.+.|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888899999999999999986543
No 284
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.88 E-value=0.17 Score=42.46 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 368 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
+..++..+...|+.+.+.+.++++...+|-+...|..++.+|.+.|+...|+..|+++.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555555555555555555443
No 285
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.83 E-value=0.061 Score=28.50 Aligned_cols=30 Identities=23% Similarity=0.071 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039362 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQP 396 (440)
Q Consensus 367 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 396 (440)
+|..+...+...|++++|...|+++++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455666667777777777777777777666
No 286
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.83 E-value=4.1 Score=39.40 Aligned_cols=87 Identities=13% Similarity=0.132 Sum_probs=41.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCccH-hHHHHHHHHH-HhcCC-----------hhHHHHHHHHHHhc-------CCCC
Q 039362 339 MVDALSRAGQVTEAYEFICQMPLEPTA-SMLGSLLTGC-MNHGK-----------LDLAEIVGKKLVEL-------QPDH 398 (440)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~~p~~-~~~~~l~~~~-~~~g~-----------~~~a~~~~~~~~~~-------~~~~ 398 (440)
...-+...|++++|..+|.-.+-...+ .+.+.++.-. ..... ...|..+.+..... .+..
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~ 499 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKN 499 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHH
Confidence 344456778888888888877522111 3333333322 22222 22333333333221 1111
Q ss_pred CchHHHHHHH-----HHhccChHHHHHHHHHH
Q 039362 399 DGRYVGLSNV-----YAIFKRWDEARTTREAM 425 (440)
Q Consensus 399 ~~~~~~l~~~-----~~~~g~~~~A~~~~~~~ 425 (440)
..++..|... +...|+|++|++.++++
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 2233333332 46789999998888765
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.74 E-value=2.9 Score=37.23 Aligned_cols=66 Identities=14% Similarity=0.064 Sum_probs=49.3
Q ss_pred ccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CCCchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQP----DHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 363 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
....+|..++..+.+.|.++.|...+.++...++ ..+.+....+..+...|+..+|...++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3446777788888888888888888888877552 13456667777888888888888888877773
No 288
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.68 E-value=3.7 Score=38.17 Aligned_cols=360 Identities=11% Similarity=0.033 Sum_probs=178.2
Q ss_pred hhHHHHhhhcC--CCChH-HHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHh-hchhcHHHHHHHHHHH
Q 039362 14 DYSCKVLSHLS--NPRIF-YWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS-GRLAKRELAVAVHAQI 89 (440)
Q Consensus 14 ~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~ 89 (440)
+.++..++.+. -|... -|-.....=.+.|..+.+..+|++.... ++.+...|......+ ...|+.+...+.|+.+
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 34444455443 34443 4555555555666666666666666543 444444444444333 2345566666666666
Q ss_pred HHc-CCC-CcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHH---h------cCChHHHHH--------
Q 039362 90 AKT-GYE-SDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYA---K------CGEMNMARQ-------- 150 (440)
Q Consensus 90 ~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~---~------~~~~~~a~~-------- 150 (440)
... |.. .+...+...|..-...+++.....+++++.+.....++..-..|. . ....+++.+
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~ 220 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER 220 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh
Confidence 553 111 123345555555555666666666666655422222221111110 0 011111111
Q ss_pred ---------------HHhhCCCCch---hhHH-------HHHHHHHhcCCHHHHHHHHHHHHhc---CCCC----CHHHH
Q 039362 151 ---------------VFELMPERNV---VSWS-------ALIDGYVKCGDYKEALVIFEEMRDV---GSKA----NEVTL 198 (440)
Q Consensus 151 ---------------~~~~~~~~~~---~~~~-------~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~ 198 (440)
..+.+..|.. ...+ ..-..+............++.-... .+.| +..+|
T Consensus 221 ~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw 300 (577)
T KOG1258|consen 221 SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNW 300 (577)
T ss_pred hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHH
Confidence 1111111110 0011 1111222223333333344433322 1222 33556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc-CCchhhHHHHHHHHH-hc
Q 039362 199 VSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH-QSDVLIWNAMIGGLA-MH 276 (440)
Q Consensus 199 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~-~~ 276 (440)
..-+.--...|+.+.+.-.++...-.. ..-...|-..+.-....|+.+-|..++....+. .|+......+-..+. ..
T Consensus 301 ~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~ 379 (577)
T KOG1258|consen 301 RYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN 379 (577)
T ss_pred HHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence 666666678888888888888775332 222334444444455558888888887776654 233322222223333 45
Q ss_pred CChHHHHHHHHHHHHcCCCccHhh-HHHHHHHHHcCCChHHHH---HHHHHHhhcCCCCCcchHHHHHHH-----HHhcC
Q 039362 277 GFVKESLELFTEMQIVGITPDEIT-FLGLLSACAHGGLVMEAW---YFFKSLGKRGMVPKSEHYACMVDA-----LSRAG 347 (440)
Q Consensus 277 ~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~ 347 (440)
|+++.|..+++.....- |+..- -..-+....+.|+.+.+. .++...... .-+..+...+.-- +.-.+
T Consensus 380 ~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred ccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhc
Confidence 79999999999988763 55432 122233344667777776 333333322 1222222222222 33467
Q ss_pred CHHHHHHHHhcC-C-CCccHhHHHHHHHHHHhcC
Q 039362 348 QVTEAYEFICQM-P-LEPTASMLGSLLTGCMNHG 379 (440)
Q Consensus 348 ~~~~a~~~~~~~-~-~~p~~~~~~~l~~~~~~~g 379 (440)
+.+.|..++.++ . ..++...|..++..+...+
T Consensus 456 d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 456 DADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred CHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 889999999988 4 3445567777777766554
No 289
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.67 E-value=0.067 Score=40.41 Aligned_cols=84 Identities=13% Similarity=0.084 Sum_probs=45.0
Q ss_pred HHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHH
Q 039362 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148 (440)
Q Consensus 69 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (440)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++.... .....++..+.+.|-++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555556666666666666666655555566667777777776666666666663322 2223344444444444444
Q ss_pred HHHHhhC
Q 039362 149 RQVFELM 155 (440)
Q Consensus 149 ~~~~~~~ 155 (440)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 4444433
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.61 E-value=1.5 Score=33.31 Aligned_cols=55 Identities=16% Similarity=0.072 Sum_probs=24.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc
Q 039362 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262 (440)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 262 (440)
..++.+++..++..+.-.. |.....-..-...+...|++.+|+++|+.+....|.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG 76 (160)
T ss_pred ccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 4445555555555544332 222222222333444555555555555555443333
No 291
>PRK09687 putative lyase; Provisional
Probab=94.54 E-value=2.7 Score=35.94 Aligned_cols=26 Identities=12% Similarity=-0.070 Sum_probs=13.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039362 370 SLLTGCMNHGKLDLAEIVGKKLVELQP 396 (440)
Q Consensus 370 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 396 (440)
..+.++...|+. +|...+.++.+.+|
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 344445555553 45555555555444
No 292
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.49 E-value=2.8 Score=36.05 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHh--cC----CHHHHHHHHhhhhhcCC-----chhhHHHHHHHHHhcCCh--
Q 039362 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAK--CG----AIKEALIVFHGVEKHQS-----DVLIWNAMIGGLAMHGFV-- 279 (440)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~-- 279 (440)
+...+++.+.+.|+..+..++-+....... .. ...+|..+|+.|.+..| +...+..++.. ..++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344566666666666665544432222222 11 24567777777776644 44455555443 33333
Q ss_pred --HHHHHHHHHHHHcCCCccHh--hHHHHHHHHHcCCC--hHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 039362 280 --KESLELFTEMQIVGITPDEI--TFLGLLSACAHGGL--VMEAWYFFKSLGKRGMVPKSEHYACMVD 341 (440)
Q Consensus 280 --~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (440)
+.++.+|+.+.+.|+..+.. ....++..+..... ..++.++++.+.+.|+++....|..+.-
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 45677778888877655432 33334433322222 3477888888888888877777665543
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.38 E-value=0.38 Score=36.38 Aligned_cols=72 Identities=18% Similarity=0.024 Sum_probs=48.4
Q ss_pred HhcCCHHHHHHHHhcC-CCCccHhHHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccCh
Q 039362 344 SRAGQVTEAYEFICQM-PLEPTASMLGS-LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415 (440)
Q Consensus 344 ~~~~~~~~a~~~~~~~-~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 415 (440)
...++.+++..++..+ -++|....... -...+...|++.+|..+++.+.+..|..+..-..++.++...|+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 4677888888888887 45565443322 233456788888888888888777777765555556666555553
No 294
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.36 E-value=0.35 Score=35.90 Aligned_cols=70 Identities=14% Similarity=0.016 Sum_probs=36.4
Q ss_pred hcCCHHHHHHHHhcC-CCCccHhHHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 039362 345 RAGQVTEAYEFICQM-PLEPTASMLGS-LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414 (440)
Q Consensus 345 ~~~~~~~a~~~~~~~-~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (440)
..++.+++..++..+ -+.|+..-... -...+...|++++|.++++.+.+..+..+..-..++.++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 456666666666666 33443322211 12234566677777777776666555544333444444444444
No 295
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.36 E-value=5.4 Score=38.73 Aligned_cols=115 Identities=9% Similarity=0.019 Sum_probs=60.4
Q ss_pred cCChHHHHHHHHHHHHcC-CCccHh--hHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 039362 276 HGFVKESLELFTEMQIVG-ITPDEI--TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352 (440)
Q Consensus 276 ~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 352 (440)
..+.+.|..++....... ..+... ....+.......+...++...+....... .+......-++.-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345677777777764432 222221 23333333333322455555555543321 2444445555555677888887
Q ss_pred HHHHhcCCC-CccHhHHHH-HHHHHHhcCChhHHHHHHHHHH
Q 039362 353 YEFICQMPL-EPTASMLGS-LLTGCMNHGKLDLAEIVGKKLV 392 (440)
Q Consensus 353 ~~~~~~~~~-~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~ 392 (440)
...+..|.. ..+..-|.. +.+++...|+.++|..+|+++.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777721 111122222 4455556788888888888763
No 296
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.20 E-value=1 Score=40.46 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=65.1
Q ss_pred HhcCChHHHHHH-HHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 039362 274 AMHGFVKESLEL-FTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352 (440)
Q Consensus 274 ~~~~~~~~a~~~-~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 352 (440)
...|+.-.|-+- +.-+....-.|+..-+... .+...|+++.+.+.+...... +.....+...+++...+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 344555554433 3333333223443333222 344567777777666655443 223445566667777777777777
Q ss_pred HHHHhcC-CCC-ccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 039362 353 YEFICQM-PLE-PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400 (440)
Q Consensus 353 ~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (440)
...-..| +.+ -+..+...........|-++++...|++...++|+...
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 7766665 211 12333333333344566667777777777777655443
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.06 E-value=2.1 Score=32.93 Aligned_cols=133 Identities=8% Similarity=0.067 Sum_probs=72.2
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC--CHHHHHHHhhCCC
Q 039362 48 ISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCG--DIVYAREVFDGMP 125 (440)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~ 125 (440)
.+.++.+.+.+++|+...+..+++.+.+.|++..... +++.++-+|.......+-.+.... -..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3445555666777777777777777777777654433 444445555444433332222211 1223333443332
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039362 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRD 188 (440)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (440)
..+..++..+...|++-+|.+..+.....+......++.+..+.++...-..+++-...
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24455666677777777777777665444444445555666666665555555544443
No 298
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.95 E-value=6.1 Score=37.87 Aligned_cols=310 Identities=15% Similarity=0.046 Sum_probs=166.8
Q ss_pred CCCCcHHHHH-----HHHHHHHhcCCHHHHHHHhhCCCCCc---hhhHHHHHHHHHhcC---ChHHHHHHHhhCCC--Cc
Q 039362 93 GYESDLFISN-----SLIHMYGSCGDIVYAREVFDGMPTKM---SVSWNSMLDGYAKCG---EMNMARQVFELMPE--RN 159 (440)
Q Consensus 93 ~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~--~~ 159 (440)
|++.+..-|. .+++-+...+.+..|+++-..+..|. ...|......+.+.. +.+-+..+-+++.. ..
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~ 506 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTP 506 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCC
Confidence 5555544443 34556666778888888877776554 445555555555542 23334444444544 34
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHH
Q 039362 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA----NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (440)
..+|..++......|+.+-|..+++.=...+... +..-+...+.-+...|+.+-...++-.+...- +
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~------ 577 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---N------ 577 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---H------
Confidence 5677777777778888888887765422211000 11122333344444555555554444443221 0
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHH--HHH----HHcCCCccHhhHHHHHHHHH
Q 039362 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELF--TEM----QIVGITPDEITFLGLLSACA 309 (440)
Q Consensus 236 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--~~m----~~~~~~p~~~~~~~l~~~~~ 309 (440)
....+....+...|..+|....+..... .+-..|-...+.. +...| +.. ...|..|+.. ....++.
T Consensus 578 ~s~l~~~l~~~p~a~~lY~~~~r~~~~~----~l~d~y~q~dn~~-~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a 649 (829)
T KOG2280|consen 578 RSSLFMTLRNQPLALSLYRQFMRHQDRA----TLYDFYNQDDNHQ-ALASFHLQASYAAETIEGRIPALK---TAANAFA 649 (829)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHhhchh----hhhhhhhcccchh-hhhhhhhhhhhhhhhhcccchhHH---HHHHHHh
Confidence 0111112223344444444443211100 0111122222222 22111 110 1122233332 3333444
Q ss_pred cCCC----------hHHHHHHHHHHhhc-CCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhc
Q 039362 310 HGGL----------VMEAWYFFKSLGKR-GMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNH 378 (440)
Q Consensus 310 ~~~~----------~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~ 378 (440)
+... ..+-+.+.+.+... |..-...+.+--+..+...|+..+|.++-.+.+ -||...|..-+.+++..
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~ 728 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADI 728 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhh
Confidence 3322 12222333333333 333445566667778889999999999999997 47888888888899999
Q ss_pred CChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHH
Q 039362 379 GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425 (440)
Q Consensus 379 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 425 (440)
+++++-+++.+.. .+|.-|.-...+|.+.|+.++|.+++-+.
T Consensus 729 ~kweeLekfAksk-----ksPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 729 KKWEELEKFAKSK-----KSPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred hhHHHHHHHHhcc-----CCCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 9998776665543 23567888899999999999999998654
No 299
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.85 E-value=0.79 Score=39.14 Aligned_cols=88 Identities=13% Similarity=-0.034 Sum_probs=50.8
Q ss_pred HHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHH
Q 039362 238 DMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316 (440)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 316 (440)
.-|.+.|.+++|+++|.+.....| |.+++..-..+|.+...+..|+.-.......+ ..-...|..-+.+-...|...+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 456677777777777777666666 67777777777777777776666555554332 1111233333333333455555
Q ss_pred HHHHHHHHhh
Q 039362 317 AWYFFKSLGK 326 (440)
Q Consensus 317 a~~~~~~~~~ 326 (440)
|.+-++..++
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 5555555554
No 300
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.76 E-value=0.15 Score=43.23 Aligned_cols=95 Identities=13% Similarity=-0.024 Sum_probs=68.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHhcC-CCC-ccHhHHHHHHHHHHhcCC
Q 039362 304 LLSACAHGGLVMEAWYFFKSLGKRGMVP-KSEHYACMVDALSRAGQVTEAYEFICQM-PLE-PTASMLGSLLTGCMNHGK 380 (440)
Q Consensus 304 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~ 380 (440)
-..-|.+.|.+++|+..|...+.. .| +..++..-..+|.+..++..|..-.... .+. .-...|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 345678889999999999887774 35 7788888888999999888877766655 211 112334444444445778
Q ss_pred hhHHHHHHHHHHhcCCCCCc
Q 039362 381 LDLAEIVGKKLVELQPDHDG 400 (440)
Q Consensus 381 ~~~a~~~~~~~~~~~~~~~~ 400 (440)
..+|.+-++.++++.|.+..
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH
Confidence 88899999999999988643
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.70 E-value=0.15 Score=26.60 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=13.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCC
Q 039362 371 LLTGCMNHGKLDLAEIVGKKLVELQPD 397 (440)
Q Consensus 371 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 397 (440)
+..++.+.|++++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 334444445555555555555544443
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.40 E-value=2.9 Score=32.84 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCccH--hhHHHHHHHHHcCCChHHHHHHHHHHhh
Q 039362 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDE--ITFLGLLSACAHGGLVMEAWYFFKSLGK 326 (440)
Q Consensus 266 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 326 (440)
+..+...|++.|+.+.|.+.+.++.+....|.. ..+..+++.....+++..+...+.++..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444555555555555555555555544333322 1234444444555555555555555443
No 303
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.39 E-value=2.6 Score=33.08 Aligned_cols=63 Identities=21% Similarity=0.302 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039362 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE--VTLVSVLCACAHLGALDQGRMMLRYMID 223 (440)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (440)
..+..+...|.+.|+.+.|++.|.++.+....+.. ..+..++......+++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566667777777777777777776655433332 3445566666666677666666665543
No 304
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=8.6 Score=37.49 Aligned_cols=136 Identities=10% Similarity=0.071 Sum_probs=91.5
Q ss_pred CChhhHHHHhhhc-CCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHH
Q 039362 11 GNIDYSCKVLSHL-SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQI 89 (440)
Q Consensus 11 g~~~~A~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 89 (440)
|++++|...|-+- ..-++ .-+|.-|........-...++.+.+.|+. +...-..|+.+|.+.++.++-.+..+..
T Consensus 382 gdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 382 GDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred CCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 8999998877543 32111 12456667777777888889999998864 4445578899999999999877766554
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC
Q 039362 90 AKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE 157 (440)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 157 (440)
- .|.- ..-....+..+.+.+-.++|..+-..... +...... .+...+++++|++.+..++-
T Consensus 458 ~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 458 D-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred C-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHHHHHHHHhcCCH
Confidence 3 2211 11134566777778888888776655544 3333333 34467889999999999874
No 305
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.23 E-value=0.24 Score=26.15 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhhhc
Q 039362 233 QTSLIDMYAKCGAIKEALIVFHGVEKH 259 (440)
Q Consensus 233 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 259 (440)
|..+..+|...|++++|+..|+++.+.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 306
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.00 E-value=0.19 Score=26.74 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=11.6
Q ss_pred CCchhhHHHHHHHHHhcCCHHHH
Q 039362 227 SLTLPLQTSLIDMYAKCGAIKEA 249 (440)
Q Consensus 227 ~~~~~~~~~l~~~~~~~g~~~~A 249 (440)
|.+...|..+..+|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 44445555555555555555544
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.95 E-value=0.27 Score=25.82 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhhhcCC
Q 039362 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQS 261 (440)
Q Consensus 233 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 261 (440)
+..+..+|...|++++|++.|++.....|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 34444555555555555555555444333
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.94 E-value=3 Score=31.18 Aligned_cols=52 Identities=12% Similarity=-0.073 Sum_probs=24.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcC
Q 039362 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ 260 (440)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 260 (440)
.++++++..+++.+.-.. |.....-..-...+...|++++|.++|+++.+..
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 455555555555554332 2222222223334455566666666666655433
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.80 E-value=0.29 Score=27.26 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039362 367 MLGSLLTGCMNHGKLDLAEIVGKKLVE 393 (440)
Q Consensus 367 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 393 (440)
+++.+...|...|++++|..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555566555555555544
No 310
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.50 E-value=20 Score=39.67 Aligned_cols=313 Identities=14% Similarity=0.051 Sum_probs=161.4
Q ss_pred HHHHHhhchhcHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHhhC-CCCCchhhHHHHHHHHHhcCC
Q 039362 68 FLAKASGRLAKRELAVAVHAQIAKTG--YESDLFISNSLIHMYGSCGDIVYAREVFDG-MPTKMSVSWNSMLDGYAKCGE 144 (440)
Q Consensus 68 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 144 (440)
.+..+-.+.+.+.+|...++.-.... -......+..+...|+..+++|...-+... ..+++ ...-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 34445567788899998888831111 111234455566689999999888777663 33333 2334556678899
Q ss_pred hHHHHHHHhhCCC--Cc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHH
Q 039362 145 MNMARQVFELMPE--RN-VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL-VSVLCACAHLGALDQGRMMLRY 220 (440)
Q Consensus 145 ~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~ 220 (440)
+..|...|+.+.+ |+ ..+++-++......|.++.+.-..+-..... .+....+ +.-+.+--+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 9999999999986 33 5678888888888888888877666554432 2222222 223334456777777766655
Q ss_pred HHHcCCCCchhhHHHHHHHHHhcCCHH--HHHHHHhhhhhc-----------CCchhhHHHHHHHHHhcCChHHHHHHHH
Q 039362 221 MIDKGLSLTLPLQTSLIDMYAKCGAIK--EALIVFHGVEKH-----------QSDVLIWNAMIGGLAMHGFVKESLELFT 287 (440)
Q Consensus 221 ~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 287 (440)
+.+. .+..+. .++....+..+-+ .-.+..+.+.+. +.-...|..++....-..- +.- .+
T Consensus 1543 --~~n~-e~w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-~~~---~~ 1614 (2382)
T KOG0890|consen 1543 --DRNI-EYWSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-ENS---IE 1614 (2382)
T ss_pred --cccc-cchhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-HHH---HH
Confidence 1111 111111 1222222221111 111111111110 1011233333333221111 000 01
Q ss_pred HHHHcCCCccHhh------HHHHHHHHHcCCChHHHHHHHHHHh-hcCCCC-----CcchHHHHHHHHHhcCCHHHHHHH
Q 039362 288 EMQIVGITPDEIT------FLGLLSACAHGGLVMEAWYFFKSLG-KRGMVP-----KSEHYACMVDALSRAGQVTEAYEF 355 (440)
Q Consensus 288 ~m~~~~~~p~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~ 355 (440)
.. .++.++..+ |..-+.--....+..+-+--+++.. .....| -..+|....+...+.|+++.|...
T Consensus 1615 ~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1615 EL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred Hh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 10 112222211 1111111111111111111122111 111122 235677778888889999999887
Q ss_pred HhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039362 356 ICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ 395 (440)
Q Consensus 356 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 395 (440)
+-.++..--+..+...++-..+.|+...|+.++++.++.+
T Consensus 1693 ll~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 7666322244555667777889999999999999999765
No 311
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.47 E-value=6.5 Score=33.91 Aligned_cols=131 Identities=14% Similarity=0.201 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHcCCC---CchhhHHHHHHHHHhcCCH
Q 039362 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAH--LG----ALDQGRMMLRYMIDKGLS---LTLPLQTSLIDMYAKCGAI 246 (440)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 246 (440)
+++.+.+++.|.+.|+..+..+|.+....... .. ....+..+++.|.+...- ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566778888888888887776654433332 22 355778889999876422 222333333332 33333
Q ss_pred ----HHHHHHHhhhhhc---CCc-hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCccHhhHHHHHHHH
Q 039362 247 ----KEALIVFHGVEKH---QSD-VLIWNAMIGGLAMHGF--VKESLELFTEMQIVGITPDEITFLGLLSAC 308 (440)
Q Consensus 247 ----~~A~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 308 (440)
+.+..+|+.+.+. ..| ......++........ ..++.++++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 4556667766653 122 3333333333322222 457899999999999998887776654433
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.44 E-value=0.21 Score=37.68 Aligned_cols=84 Identities=12% Similarity=0.041 Sum_probs=45.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCH
Q 039362 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQV 349 (440)
Q Consensus 270 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (440)
+..+.+.+.+.....+++.+...+...+....+.++..|++.+..+....+++.. +..-...+++.+.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence 4445555666666666666665544444556666666777666556655555411 111223445555566666
Q ss_pred HHHHHHHhcCC
Q 039362 350 TEAYEFICQMP 360 (440)
Q Consensus 350 ~~a~~~~~~~~ 360 (440)
++|.-++.+++
T Consensus 87 ~~a~~Ly~~~~ 97 (143)
T PF00637_consen 87 EEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHHHcc
Confidence 66666666553
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.34 E-value=11 Score=36.39 Aligned_cols=68 Identities=13% Similarity=0.280 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhcC
Q 039362 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHG 379 (440)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g 379 (440)
....+..|.+.|-+++-.-++.+|-. ++.+|.-.--+.++.++|+++.++-. |...|..|+.-+...-
T Consensus 637 lekA~eiC~q~~~~~E~VYlLgrmGn--------~k~AL~lII~el~die~AIefvKeq~---D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 637 LEKALEICSQKNFYEELVYLLGRMGN--------AKEALKLIINELRDIEKAIEFVKEQD---DSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHhhcc--------hHHHHHHHHHHhhCHHHHHHHHHhcC---CHHHHHHHHHHhhcCc
Confidence 44555566666666666666665532 23333333445667777777776543 6677777776555443
No 314
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.20 E-value=1.9 Score=36.49 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=62.0
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc-----CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHh
Q 039362 225 GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH-----QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI 299 (440)
Q Consensus 225 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 299 (440)
|.+....+...++..-....+++.+...+-++... .|+. +-.+.+..+ -.-++++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 33444444555555555566677777766666542 1111 111222222 2235667777777777788888888
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 039362 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR 327 (440)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 327 (440)
+++.+++.+.+.+++.+|..+...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888887777766654
No 315
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.02 E-value=2.7 Score=33.09 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=56.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 039362 168 DGYVKCGDYKEALVIFEEMRDVGSKANE-----VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242 (440)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 242 (440)
.-+.+.|++++|..-|...+..- ++.. ..|..-..++.+.+.++.|+.-..+.++.+ +........-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 44566777777777777776652 2221 234444445666777777777666666665 3333333444556666
Q ss_pred cCCHHHHHHHHhhhhhcCCc
Q 039362 243 CGAIKEALIVFHGVEKHQSD 262 (440)
Q Consensus 243 ~g~~~~A~~~~~~~~~~~~~ 262 (440)
...+++|+.-|+++.+..|.
T Consensus 181 ~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcc
Confidence 77777777777777666554
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.00 E-value=12 Score=36.13 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=66.1
Q ss_pred HHHhhchhcHHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChH
Q 039362 70 AKASGRLAKRELAVAVHAQIAKTGYES---DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMN 146 (440)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (440)
++.+.+.+.+++|+.+.+..... .| -..+....+..+...|+++.|-...-.|...+..-|..-+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 45566777888888766554332 22 23456677788888889999888888888777777777777776666655
Q ss_pred HHHHHHhhCCC-CchhhHHHHHHHHHh
Q 039362 147 MARQVFELMPE-RNVVSWSALIDGYVK 172 (440)
Q Consensus 147 ~a~~~~~~~~~-~~~~~~~~l~~~~~~ 172 (440)
....++-.-.. -+...|..++..+..
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 44433322221 245677777777666
No 317
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.98 E-value=5.8 Score=32.25 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=9.0
Q ss_pred HhcCCHHHHHHHHHHH
Q 039362 171 VKCGDYKEALVIFEEM 186 (440)
Q Consensus 171 ~~~~~~~~a~~~~~~~ 186 (440)
.-.+++++|.++|.+.
T Consensus 25 gg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERA 40 (288)
T ss_pred CCCcchHHHHHHHHHH
Confidence 3344666666666553
No 318
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.73 E-value=10 Score=34.63 Aligned_cols=98 Identities=7% Similarity=-0.057 Sum_probs=71.7
Q ss_pred CCCcchH-HHHHHHHHhcCCHHHHHHHHhcC-CC-CccHhHHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCchHHH
Q 039362 330 VPKSEHY-ACMVDALSRAGQVTEAYEFICQM-PL-EPTASMLGSLLTGCM--NHGKLDLAEIVGKKLVELQPDHDGRYVG 404 (440)
Q Consensus 330 ~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~-~~-~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 404 (440)
.|+..++ +.+++.+.+.|-..+|...+..+ .. .|+...+..++..-. ..-+...+..+|+.+......++..|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 4555554 56778888899999999999988 22 346677777776432 2334778889999888766577778888
Q ss_pred HHHHHHhccChHHHHHHHHHHHh
Q 039362 405 LSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 405 l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
....-...|+.+.+-.++.+..+
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHhhccCCCcccccHHHHHHHH
Confidence 87777788988888877766544
No 319
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.72 E-value=0.25 Score=24.26 Aligned_cols=23 Identities=17% Similarity=0.034 Sum_probs=15.3
Q ss_pred hHHHHHHHHHhccChHHHHHHHH
Q 039362 401 RYVGLSNVYAIFKRWDEARTTRE 423 (440)
Q Consensus 401 ~~~~l~~~~~~~g~~~~A~~~~~ 423 (440)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44566677777777777776664
No 320
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.66 E-value=6 Score=31.77 Aligned_cols=179 Identities=15% Similarity=-0.017 Sum_probs=98.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCChHHHHHHH
Q 039362 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGFVKESLELF 286 (440)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 286 (440)
.|-..-|.--|.+.+... |.-+.+||.|.-.+...|+++.|.+.|+...+..|. ..+...-.-++.--|++.-|.+-+
T Consensus 78 lGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 344444444444444433 444667888888888888999998888888876663 233322233344457888887777
Q ss_pred HHHHHcCCCccHh--hHHHHHHHHHcCCChHHHHHHH-HHHhhcCCCCCcchHHH-HHHHHHhcCCHHHHHHHHhcCCC-
Q 039362 287 TEMQIVGITPDEI--TFLGLLSACAHGGLVMEAWYFF-KSLGKRGMVPKSEHYAC-MVDALSRAGQVTEAYEFICQMPL- 361 (440)
Q Consensus 287 ~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~- 361 (440)
...-+.. +.|+. .|..+. ...-++.+|..-+ ++... .|..-|.. ++..|...=..+.+.+-......
T Consensus 157 ~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~ 228 (297)
T COG4785 157 LAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEETLMERLKADATD 228 (297)
T ss_pred HHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccc
Confidence 7766553 22321 222221 2233555555433 33322 23333332 33333322223333333332210
Q ss_pred -----CccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039362 362 -----EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ 395 (440)
Q Consensus 362 -----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 395 (440)
.--..||-.+.+-+...|+.++|..+|+-++..+
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 0123567778888889999999999999887765
No 321
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.55 E-value=0.32 Score=25.28 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 401 RYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 401 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
++..++.++.+.|++++|.+.|+++++.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45678899999999999999999998764
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.49 E-value=0.39 Score=26.69 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 401 RYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 401 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
++..++.+|...|++++|..++++....
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 6788999999999999999999998764
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.36 E-value=19 Score=36.90 Aligned_cols=136 Identities=15% Similarity=0.189 Sum_probs=81.0
Q ss_pred HHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039362 106 HMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEE 185 (440)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (440)
+.-.+.|.+..|..++..-.+.-...|.+....+...+.+++|--+|+..-+. ...+.+|...|+|++|+.+-.+
T Consensus 916 n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~q 990 (1265)
T KOG1920|consen 916 NYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAAQ 990 (1265)
T ss_pred HHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHHh
Confidence 33344555556655554333333445666666667777777777777665431 2235677778888888887776
Q ss_pred HHhcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhh
Q 039362 186 MRDVGSKANEVT--LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257 (440)
Q Consensus 186 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 257 (440)
+.. ..+... -..|+.-+...+++-+|-++..+.... | ...+..|++...+++|.++-....
T Consensus 991 l~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 991 LSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 632 112211 245666777778888888877766532 1 234455666677778777665544
No 324
>PRK10941 hypothetical protein; Provisional
Probab=91.30 E-value=1.4 Score=37.18 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 367 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
..+.+-.++.+.++++.|..+.+.++...|+++.-+.--+..|.+.|.+..|..=++..++...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 3456666788899999999999999999999988888888889999999999888888877654
No 325
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.93 E-value=6.3 Score=30.65 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=9.3
Q ss_pred HHHHHHhhhhhcCCchhhHHHHHH
Q 039362 248 EALIVFHGVEKHQSDVLIWNAMIG 271 (440)
Q Consensus 248 ~A~~~~~~~~~~~~~~~~~~~l~~ 271 (440)
+|...|++.....|+...|+.-+.
T Consensus 98 kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 98 KATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHH
Confidence 333333443334444444444443
No 326
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.87 E-value=8.6 Score=36.00 Aligned_cols=100 Identities=16% Similarity=0.099 Sum_probs=48.7
Q ss_pred hcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHH
Q 039362 242 KCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321 (440)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 321 (440)
+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+.+....+-
T Consensus 649 ~lgrl~iA~~la~e~~----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hcCcHHHHHHHHHhhc----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 3455555544443322 344556666666666666666666555432 233444444445544433333
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039362 322 KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360 (440)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 360 (440)
....+.|.. |....+|...|+++++.+++.+-+
T Consensus 716 ~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 716 SLAKKQGKN------NLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHhhccc------chHHHHHHHcCCHHHHHHHHHhcC
Confidence 333343311 122234555666666666666553
No 327
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.79 E-value=2.6 Score=28.66 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039362 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI 222 (440)
Q Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (440)
++.+-++.+....+.|++......+++|.+.+++..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444555555556666666666666666666666666666554
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.73 E-value=1.1 Score=35.74 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcC-CCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039362 337 ACMVDALSRAGQVTEAYEFICQM-PLEPTA-SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (440)
+.-+..+.+.+...+++...++- +-+|.. ..-..+++.++-.|++++|..-++-.-++.|...
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34455566666677776666554 444533 3334455666677777777777766666666544
No 329
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.70 E-value=3.3 Score=32.85 Aligned_cols=68 Identities=15% Similarity=-0.002 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCC-------CCchhhHHHHHHHHHhcCChHHH
Q 039362 80 ELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP-------TKMSVSWNSMLDGYAKCGEMNMA 148 (440)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a 148 (440)
+.|.+.|-.+...+.--++.....|...|. ..|.+++..++.... ..|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 335555555544443334444444444444 344555555444332 23455555666666666665554
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.58 E-value=0.65 Score=24.36 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 401 RYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 401 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
+|..++..|...|++++|.+.|++.++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 67889999999999999999999987743
No 331
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.49 E-value=0.6 Score=23.58 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=12.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039362 370 SLLTGCMNHGKLDLAEIVGKKLVELQP 396 (440)
Q Consensus 370 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 396 (440)
.+...+...|+++.|...+++.++..|
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344444444444444444444444433
No 332
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.43 E-value=0.72 Score=35.59 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHHHHHHH---hcCCHHHHHHHHh-------cC-CCCccH-hHHHHHHHHHHhcC--
Q 039362 314 VMEAWYFFKSLGKRGMVPKSEHYACMVDALS---RAGQVTEAYEFIC-------QM-PLEPTA-SMLGSLLTGCMNHG-- 379 (440)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~-------~~-~~~p~~-~~~~~l~~~~~~~g-- 379 (440)
++.|.+.++.....+ +.|...++.-..++. +.....++.++++ +. .+.|+. .++..+..++...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 445555555544433 234444443333333 2333333433333 33 456654 56666666665433
Q ss_pred ---------ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHh-ccChHHHHHHHHHHHhcCC
Q 039362 380 ---------KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI-FKRWDEARTTREAMETRGV 430 (440)
Q Consensus 380 ---------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~ 430 (440)
.+++|...|+++.+.+|.+ ..|.+ ..-..+|-++..++.+++.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~n--------e~Y~ksLe~~~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNN--------ELYRKSLEMAAKAPELHMEIHKQGL 138 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHHHHTHHHHHHHHHHSSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCc--------HHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 2455666666666677775 44433 3444566666666666543
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.41 E-value=0.54 Score=26.73 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=20.4
Q ss_pred HHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 404 GLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 404 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
.++.+|...|+.+.|+++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 56778888888888888888887654
No 334
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.28 E-value=2.5 Score=28.74 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039362 46 KSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIH 106 (440)
Q Consensus 46 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (440)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++-++... ..+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 455566666666677777777777777777777777777777666431 223345554443
No 335
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.21 E-value=20 Score=35.39 Aligned_cols=218 Identities=15% Similarity=0.027 Sum_probs=117.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchh-------hHHHH-HHHHHhcCCHHHHHHHHhhhhhcC------CchhhHHHH
Q 039362 204 ACAHLGALDQGRMMLRYMIDKGLSLTLP-------LQTSL-IDMYAKCGAIKEALIVFHGVEKHQ------SDVLIWNAM 269 (440)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~l 269 (440)
......++++|..++.++...-..|+.. .++.+ .......|++++|.++.+.....- +....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456678888888888875543222211 22222 223345688899988888776542 245667777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCccHhhHH---HH--HHHHHcCCCh--HHHHHHHHHHhhc--CCCC----CcchH
Q 039362 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFL---GL--LSACAHGGLV--MEAWYFFKSLGKR--GMVP----KSEHY 336 (440)
Q Consensus 270 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~l--~~~~~~~~~~--~~a~~~~~~~~~~--~~~~----~~~~~ 336 (440)
..+..-.|++++|..+..+..+..-.-+...+. .+ ...+...|.. .+.+..+...... +-+| -..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 888888999999998887765542222332222 22 1223455633 3333334333332 1111 11233
Q ss_pred HHHHHHHHhcCCHHHHHHHHhc----C-CCCccH--hH--HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-Cc-hHHHH
Q 039362 337 ACMVDALSRAGQVTEAYEFICQ----M-PLEPTA--SM--LGSLLTGCMNHGKLDLAEIVGKKLVELQPDH-DG-RYVGL 405 (440)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~----~-~~~p~~--~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~-~~~~l 405 (440)
..+..++.+ .+.+..-... . ...|.. .. +..|+......|+.++|...++++......+ +. .|.+.
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 344444444 3333222222 1 112222 22 2367777888999999999999988865322 22 22221
Q ss_pred ---HH--HHHhccChHHHHHHHHH
Q 039362 406 ---SN--VYAIFKRWDEARTTREA 424 (440)
Q Consensus 406 ---~~--~~~~~g~~~~A~~~~~~ 424 (440)
+. .....|+.++|.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 11 22346888888777655
No 336
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.18 E-value=9.8 Score=31.67 Aligned_cols=48 Identities=8% Similarity=0.115 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHHHHcCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHhhh
Q 039362 209 GALDQGRMMLRYMIDKGLSLT---LPLQTSLIDMYAKCGAIKEALIVFHGV 256 (440)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 256 (440)
..+++|..-|++.++..-... -.....++..+.+.|++++.+..|.++
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 355566666655554421111 122233444555555555555555444
No 337
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.14 E-value=18 Score=34.65 Aligned_cols=275 Identities=11% Similarity=0.029 Sum_probs=152.0
Q ss_pred hHHHHHHHhhCCC-CchhhHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHHHhcC--
Q 039362 145 MNMARQVFELMPE-RNVVSWSALIDG-----YVKCGDYKEALVIFEEMRD-------VGSKANEVTLVSVLCACAHLG-- 209 (440)
Q Consensus 145 ~~~a~~~~~~~~~-~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-- 209 (440)
...+.+.++...+ .+......+..+ +....+.+.|+.+|+.... .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4567777777654 233333333322 3355688999999988866 44 2224445566665532
Q ss_pred ---ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh-cCCHHHHHHHHhhhhhcCCchhhHHHHH-HHH--HhcCChHHH
Q 039362 210 ---ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK-CGAIKEALIVFHGVEKHQSDVLIWNAMI-GGL--AMHGFVKES 282 (440)
Q Consensus 210 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~l~-~~~--~~~~~~~~a 282 (440)
+...|..++....+.| .|+.......+..... ..+...|..+|....+.......+..-+ -.. ....+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5677888888888887 4555444333322222 2467889999988875433332222221 111 134577888
Q ss_pred HHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHH---Hh----cCCHHHHHHH
Q 039362 283 LELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDAL---SR----AGQVTEAYEF 355 (440)
Q Consensus 283 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~~~~~a~~~ 355 (440)
..++++.-+.| .|...--...+..+.. +.++.+...+..+.+.|.......-..++... .. ..+.+.+...
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 99999888887 4443222233333434 66777766666666655332111111111111 11 1244556666
Q ss_pred HhcCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-c--ChHHHHHHHHHHHhc
Q 039362 356 ICQMPLEPTASMLGSLLTGCMN----HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF-K--RWDEARTTREAMETR 428 (440)
Q Consensus 356 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~ 428 (440)
+.+....-+......+...|.. ..+++.|...+.++...+ ......++.++-.. | .+..|.+++++..+.
T Consensus 462 ~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 462 YSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 6665444445555555554432 335778888888777666 44555555555432 1 257778887777654
No 338
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.06 E-value=3 Score=28.74 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039362 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK 224 (440)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (440)
..+-++.+....+.|++......+.+|.+.+++..|.++++.+...
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555555555555443
No 339
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=89.86 E-value=6.9 Score=32.76 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=58.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHH----
Q 039362 166 LIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA---- 241 (440)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 241 (440)
=|.+++..|+|.+++...-+.-+.--+.........|-.|.+.+.+..+.++-...++..-.-+..-|..+++.|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 3678888999999888776654432233344555556668888999888888887776543344444666666554
Q ss_pred -hcCCHHHHHHHH
Q 039362 242 -KCGAIKEALIVF 253 (440)
Q Consensus 242 -~~g~~~~A~~~~ 253 (440)
-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 357777776665
No 340
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.79 E-value=21 Score=34.81 Aligned_cols=48 Identities=15% Similarity=-0.040 Sum_probs=32.6
Q ss_pred HhcCChhHHHHHHHHHHhcC---CC------CCchHHHHHHHHHhccChHHHHHHHH
Q 039362 376 MNHGKLDLAEIVGKKLVELQ---PD------HDGRYVGLSNVYAIFKRWDEARTTRE 423 (440)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~~~---~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 423 (440)
.-.|++..|....+.+.+.. |+ .+..+...+..+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 35778888888888887753 22 12234444555556789999999997
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.78 E-value=3.1 Score=32.98 Aligned_cols=71 Identities=8% Similarity=-0.054 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc---CCCCCcchHHHHHHHHHhcCCHHHH
Q 039362 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR---GMVPKSEHYACMVDALSRAGQVTEA 352 (440)
Q Consensus 281 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 352 (440)
.|.+.|-.+...+.--++.....|...|. ..+.+++..++.++.+. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444432222222222332222 34455555555554443 1134444555555555555554444
No 342
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.36 E-value=9.2 Score=30.18 Aligned_cols=90 Identities=12% Similarity=-0.028 Sum_probs=58.0
Q ss_pred HHHHHcCCChHHHHHHHHHHhhcCCCCCcchHH-----HHHHHHHhcCCHHHHHHHHhcCCC-CccHhHHHHHHHHHHhc
Q 039362 305 LSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYA-----CMVDALSRAGQVTEAYEFICQMPL-EPTASMLGSLLTGCMNH 378 (440)
Q Consensus 305 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~-~p~~~~~~~l~~~~~~~ 378 (440)
...+...+++++|+..++..... |....+. .|.+.....|.+++|+..++...- .........-...+...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k 172 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence 34556778888888888876653 2222222 345566778888888888887631 11222233445667788
Q ss_pred CChhHHHHHHHHHHhcCCC
Q 039362 379 GKLDLAEIVGKKLVELQPD 397 (440)
Q Consensus 379 g~~~~a~~~~~~~~~~~~~ 397 (440)
|+.++|...|+++++.+++
T Consensus 173 g~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 173 GDKQEARAAYEKALESDAS 191 (207)
T ss_pred CchHHHHHHHHHHHHccCC
Confidence 8888888888888887633
No 343
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.08 E-value=1.1 Score=26.66 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 039362 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR 401 (440)
Q Consensus 369 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 401 (440)
..+..++.+.|++++|.+..+.+++..|.+..+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 456677889999999999999999999998643
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.89 E-value=11 Score=30.41 Aligned_cols=75 Identities=11% Similarity=-0.004 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc--CCCCCcchHHHHHHH
Q 039362 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDA 342 (440)
Q Consensus 267 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~ 342 (440)
+.-++.+.+.+...+++...++-++.. +.|..+-..+++.++-.|++++|..-++-.-.. ...+...+|..++++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 444556667777777777777665553 344445566677777778888777776665553 222333445555443
No 345
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.79 E-value=23 Score=33.97 Aligned_cols=175 Identities=15% Similarity=0.154 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHH-------cCCCCchhhHHHHHHHHHhc
Q 039362 176 YKEALVIFEEMRDVGSKANEVTLVSVLCA-----CAHLGALDQGRMMLRYMID-------KGLSLTLPLQTSLIDMYAKC 243 (440)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 243 (440)
...|.++++...+.|.. .....+..+ +....+++.|..+++.+.+ .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~---~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS---EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcch---HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 56788888888777622 222222222 3456789999999999877 44 333556677777764
Q ss_pred C-----CHHHHHHHHhhhhhc-CCchhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHH--cCCCh
Q 039362 244 G-----AIKEALIVFHGVEKH-QSDVLIWNAMIGGLAM-HGFVKESLELFTEMQIVGITPDEITFLGLLSACA--HGGLV 314 (440)
Q Consensus 244 g-----~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~~~~ 314 (440)
. +.+.|..++...... .|+....-..+..... ..+...|.++|....+.|.. ...-+..++.... -..+.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCH
Confidence 3 677899999888765 3333332222221112 25678999999999988843 3222222211111 23478
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC
Q 039362 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (440)
..|..++.+..+.| .|....-...+..+.. ++++.+.-.+..+
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHH
Confidence 89999999999887 3332222223333444 6666555444433
No 346
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.46 E-value=14 Score=31.22 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
.++......|...|.+.+|.++.++++..+|-+...+..++..+...|+--.|.+-++++.+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34455667788999999999999999999999999999999999999998888887777754
No 347
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=88.43 E-value=2.1 Score=39.57 Aligned_cols=95 Identities=12% Similarity=-0.022 Sum_probs=44.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-C-CCccHhHHHHHHHHHHhcCChhHHHHHH
Q 039362 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-P-LEPTASMLGSLLTGCMNHGKLDLAEIVG 388 (440)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 388 (440)
.|+...|...+..+......-.....-.|.+.+.+.|....|..++.+. . ....+-++..+..++....+.+.|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 3555555555554443321112222333444444555555555554443 1 1223344445555555555555555555
Q ss_pred HHHHhcCCCCCchHHHH
Q 039362 389 KKLVELQPDHDGRYVGL 405 (440)
Q Consensus 389 ~~~~~~~~~~~~~~~~l 405 (440)
+++.+..|+++.+-+.|
T Consensus 700 ~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 700 RQALKLTTKCPECENSL 716 (886)
T ss_pred HHHHhcCCCChhhHHHH
Confidence 55555555555544433
No 348
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.28 E-value=23 Score=33.40 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHH
Q 039362 299 ITFLGLLSACAHGGLVMEAWYFFKSL 324 (440)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 324 (440)
.-|..|..+....+++..|.+.|.+.
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34444555555555555555444443
No 349
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.20 E-value=14 Score=30.81 Aligned_cols=89 Identities=16% Similarity=0.201 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhhhhcCC-------------chhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCccHh
Q 039362 234 TSLIDMYAKCGAIKEALIVFHGVEKHQS-------------DVLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITPDEI 299 (440)
Q Consensus 234 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~ 299 (440)
..|...|...|.+.+...+++++..... -...|..-|+.|....+-..-..++++...- ..-|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 3455566666666666666655543200 1134555566666666666666666654332 1233333
Q ss_pred hHHHHHHHH-----HcCCChHHHHHHHHH
Q 039362 300 TFLGLLSAC-----AHGGLVMEAWYFFKS 323 (440)
Q Consensus 300 ~~~~l~~~~-----~~~~~~~~a~~~~~~ 323 (440)
.. ..++-| .+.|.+++|..-|=+
T Consensus 229 Im-GvIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 229 IM-GVIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred HH-hHHHHcCCccccccchHHHHHhHHHH
Confidence 32 223333 345666666543333
No 350
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.14 E-value=2.5 Score=34.45 Aligned_cols=57 Identities=9% Similarity=-0.010 Sum_probs=30.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 372 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
..++...|++-++++....++...|.|..+|..-+.+....=+.++|..=|..+++.
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 334444555555555555555555555555555555555555555555555554443
No 351
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.02 E-value=28 Score=34.04 Aligned_cols=117 Identities=9% Similarity=-0.029 Sum_probs=66.3
Q ss_pred cCChHHHHHHHHHHHHcC-CCCch--hhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHH
Q 039362 208 LGALDQGRMMLRYMIDKG-LSLTL--PLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLE 284 (440)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 284 (440)
..+.+.|...+....... +.+.. .+...+.......+..++|...+........+......-+......++++.+..
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHH
Confidence 445677888887764433 22221 222333333333322556666666554333344444444555557788888877
Q ss_pred HHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHh
Q 039362 285 LFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325 (440)
Q Consensus 285 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 325 (440)
.+..|.... .-...-...+.+++...|+.++|..+|+.+.
T Consensus 334 ~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 334 WLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777764432 2233445566777666788888888888764
No 352
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.99 E-value=12 Score=29.65 Aligned_cols=90 Identities=11% Similarity=0.039 Sum_probs=43.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHH
Q 039362 204 ACAHLGALDQGRMMLRYMIDKGLSLT--LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKE 281 (440)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 281 (440)
.+...+++++|...++.........+ ..+-..|.......|.+++|+..++...+..-.......-...+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 44555666666666665543211111 1122334455555666666666665555221122223333445566666666
Q ss_pred HHHHHHHHHHcC
Q 039362 282 SLELFTEMQIVG 293 (440)
Q Consensus 282 a~~~~~~m~~~~ 293 (440)
|..-|+...+.+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 666666655543
No 353
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.85 E-value=1.7 Score=35.22 Aligned_cols=85 Identities=14% Similarity=-0.025 Sum_probs=52.6
Q ss_pred HHcCCChHHHHHHHHHHhhcCCCCCcch-HHHHHHHHHhcCCHHHHHHHHhcC-CCCccHhH-HHHHHHHHHhcCChhHH
Q 039362 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEH-YACMVDALSRAGQVTEAYEFICQM-PLEPTASM-LGSLLTGCMNHGKLDLA 384 (440)
Q Consensus 308 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a 384 (440)
|.....+..|+..|.+.+. +.|+..+ |..-+..+.+..+++.+..--.+. .+.|+..- ...+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 4455667777777766666 3465533 445566666777777766655554 55665533 33445555667777788
Q ss_pred HHHHHHHHhc
Q 039362 385 EIVGKKLVEL 394 (440)
Q Consensus 385 ~~~~~~~~~~ 394 (440)
+..+.++..+
T Consensus 98 I~~Lqra~sl 107 (284)
T KOG4642|consen 98 IKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHH
Confidence 8877777554
No 354
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.42 E-value=7.4 Score=26.77 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 039362 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289 (440)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 289 (440)
..++|..+-+.+...+ .....+-..-+..+.+.|++++|..+.+... .||...|-++.. .+.|-.+++..-+.+|
T Consensus 20 cHqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce--~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 20 CHQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC--YPDLEPWLALCE--WRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCC--CchHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3456666666555443 1122222333456677888888888888775 788887776654 3566667777777777
Q ss_pred HHcCCCccHhhHH
Q 039362 290 QIVGITPDEITFL 302 (440)
Q Consensus 290 ~~~~~~p~~~~~~ 302 (440)
...| .|....|.
T Consensus 95 a~sg-~p~lq~Fa 106 (115)
T TIGR02508 95 AASG-DPRLQTFV 106 (115)
T ss_pred HhCC-CHHHHHHH
Confidence 7766 55555544
No 355
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.32 E-value=24 Score=32.57 Aligned_cols=63 Identities=10% Similarity=0.108 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc
Q 039362 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH 259 (440)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 259 (440)
|.....+++..+.......-++.+..+|+..| .+-..+..++++|... ..++-..+|+++.+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 34444444444444444444444444444433 2333444445555444 333444444444433
No 356
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.17 E-value=7.9 Score=26.79 Aligned_cols=60 Identities=10% Similarity=0.116 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHHH
Q 039362 212 DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMIG 271 (440)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~ 271 (440)
-+..+-++.+....+.|++.+..+.+.++.+.+++..|.++|+.+.....+ ...|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 356666777777788899999999999999999999999999988754322 225655553
No 357
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.04 E-value=7.9 Score=26.66 Aligned_cols=58 Identities=16% Similarity=0.119 Sum_probs=32.6
Q ss_pred HHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 039362 138 GYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198 (440)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 198 (440)
.+...|++++|..+.+....||...|..+. -.+.|..++...-+.+|..+| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALC--EWRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 344555555555555555556666665443 345666666666666666665 4444443
No 358
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.82 E-value=6.8 Score=33.39 Aligned_cols=95 Identities=8% Similarity=0.100 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHH
Q 039362 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVG---ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACM 339 (440)
Q Consensus 263 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 339 (440)
..+...++..-....+++.++..+-+++..- ..|+. +-...++.|.+ -++++++.++..=+.-|+-||..+++.+
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHH
Confidence 3444555555555677778877777766431 11222 22233333333 4566777777777777888888888888
Q ss_pred HHHHHhcCCHHHHHHHHhcC
Q 039362 340 VDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~ 359 (440)
++.+.+.+++.+|..+...|
T Consensus 142 ~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHHhcccHHHHHHHHHHH
Confidence 88888888888887776665
No 359
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.64 E-value=2.3 Score=28.90 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=33.5
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CchHHHHHHHHHhccChH
Q 039362 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH--DGRYVGLSNVYAIFKRWD 416 (440)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 416 (440)
|...-..+...+...|++++|++.+-.+++.++.. ...-..++..+...|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 44566667777788888888888888888776543 445666777776666643
No 360
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=86.58 E-value=42 Score=34.57 Aligned_cols=247 Identities=11% Similarity=-0.026 Sum_probs=130.0
Q ss_pred CCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH-HHHHHHhhCCCCCchhhHHHHHHH
Q 039362 60 SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI-VYAREVFDGMPTKMSVSWNSMLDG 138 (440)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~l~~~ 138 (440)
.+|+..-...+..+.+.+..+ +...+..+.+. ++..+-...+.++.+.+.. .....+...+..+|...-...+..
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~a 707 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDV 707 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHH
Confidence 356666666666666666544 44444444432 2444444444444443221 111112222333455544455555
Q ss_pred HHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH-HHHH
Q 039362 139 YAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ-GRMM 217 (440)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~ 217 (440)
+...+.. ....+...+..+|...-...+.++.+.+..+. +..+. ..++...-...+.++...+..+. +...
T Consensus 708 L~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~~~~~~~ 779 (897)
T PRK13800 708 LRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGGAPAGDA 779 (897)
T ss_pred HHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccccchhHHH
Confidence 5443321 12334455556666666666666666554432 12222 14556666666666666665432 3344
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcc
Q 039362 218 LRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD 297 (440)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 297 (440)
+..+.+ .++..+-...+.++...|..+.+...+....+ .++...-...+.++...+. +++...+..+.. .|+
T Consensus 780 L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~-d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~ 851 (897)
T PRK13800 780 VRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR-ASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPH 851 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc-CCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCC
Confidence 444443 35566777778888888876555443433332 4566666667777777765 345566655553 456
Q ss_pred HhhHHHHHHHHHcCCChHHHHHHHHHHhh
Q 039362 298 EITFLGLLSACAHGGLVMEAWYFFKSLGK 326 (440)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 326 (440)
...-...+.++.+......+...+..+.+
T Consensus 852 ~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 852 LDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66666666666665334456666666665
No 361
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.57 E-value=0.77 Score=39.24 Aligned_cols=117 Identities=15% Similarity=0.029 Sum_probs=63.4
Q ss_pred HcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccHh-HHHHHHHHHHhcCChhHHHH
Q 039362 309 AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTAS-MLGSLLTGCMNHGKLDLAEI 386 (440)
Q Consensus 309 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~ 386 (440)
...|.++.|++.|...+... .+....|..-..++.+.++...|++-+... .+.||.. -|-.-..+-...|++++|.+
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34567777777777776653 334455555566666777777777666665 5555442 22222333345677777777
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 387 VGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
.++.+++++-+.. +-..+-.+.-..+..++-...+++.++
T Consensus 204 dl~~a~kld~dE~-~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 204 DLALACKLDYDEA-NSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHhccccHH-HHHHHHHhccchhhhhhchhHHHHHHH
Confidence 7777777663321 222233333344444444444444433
No 362
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.18 E-value=20 Score=30.43 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHh
Q 039362 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325 (440)
Q Consensus 267 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 325 (440)
+.....|...|.+.+|.++.+.....+ +.+...+-.++..+...|+--.+...++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334456666677777776666666554 4455566666666666666555555555443
No 363
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=85.72 E-value=9.9 Score=26.56 Aligned_cols=86 Identities=14% Similarity=0.212 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 039362 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEM 289 (440)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 289 (440)
..++|..+.+.+...+. ....+-..-+..+.+.|+|++| +........||...|-++.. .+.|-.+++...+.++
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 45667777776666552 2233333344556667777777 22222222566666655533 3566666666666666
Q ss_pred HHcCCCccHhhH
Q 039362 290 QIVGITPDEITF 301 (440)
Q Consensus 290 ~~~~~~p~~~~~ 301 (440)
...| .|....|
T Consensus 96 a~~g-~~~~q~F 106 (116)
T PF09477_consen 96 ASSG-SPELQAF 106 (116)
T ss_dssp CT-S-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 5554 4444433
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.47 E-value=2.5 Score=24.01 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=14.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 039362 166 LIDGYVKCGDYKEALVIFEEMRDV 189 (440)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~ 189 (440)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666665543
No 365
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.43 E-value=6.1 Score=28.99 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=38.5
Q ss_pred CCcchHHHHHHHHHhcCC---HHHHHHHHhcC-C-CCcc--HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 039362 331 PKSEHYACMVDALSRAGQ---VTEAYEFICQM-P-LEPT--ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400 (440)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~-~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (440)
++..+--.+..++.+..+ ..+.+.++++. + -.|+ ......|.-++.+.++++++..+.+..++..|+|+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 444444455555555443 33445555554 2 2232 233345555666777777777777777777766653
No 366
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.04 E-value=1.9 Score=22.03 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=23.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCchHHHHHHH
Q 039362 379 GKLDLAEIVGKKLVELQPDHDGRYVGLSNV 408 (440)
Q Consensus 379 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 408 (440)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888889999988888777777766653
No 367
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.65 E-value=69 Score=37.57 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=12.7
Q ss_pred HHHHccCChhhHHHHHHHHH
Q 039362 36 RGYSKSKNPNKSISLFVKML 55 (440)
Q Consensus 36 ~~~~~~~~~~~a~~~~~~~~ 55 (440)
-.+.+.|.+++|..+|++..
T Consensus 2490 ~s~eQ~G~~e~AQ~lyekaq 2509 (3550)
T KOG0889|consen 2490 LSYEQLGFWEEAQSLYEKAQ 2509 (3550)
T ss_pred HHHHHhhhHHHHhhHHHHHH
Confidence 34566677777777776643
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.64 E-value=2.1 Score=21.31 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 400 GRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
..+..++..+...|++++|...+++.++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 36778899999999999999999888764
No 369
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.12 E-value=7 Score=31.82 Aligned_cols=66 Identities=12% Similarity=-0.035 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCChh-------HHHHHHHHHHhcC--CCC----CchHHHHHHHHHhccChHHHHHHHHHHHhcCCcc
Q 039362 367 MLGSLLTGCMNHGKLD-------LAEIVGKKLVELQ--PDH----DGRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432 (440)
Q Consensus 367 ~~~~l~~~~~~~g~~~-------~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 432 (440)
++..+.+.|...|+.+ .|...|+++.+.. |.. ......++....+.|++++|.+.|.++...+-.+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 3445555566666533 4555555555443 222 2345667778888888888888888888765433
No 370
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=83.35 E-value=27 Score=29.58 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=46.6
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 039362 332 KSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI 411 (440)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (440)
++.....+...|.+.|++.+|...|-.-. .|+...+..++......|...++- ......+--|.-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~~~e~d--------------lfi~RaVL~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGYPSEAD--------------LFIARAVLQYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTSS--HH--------------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcCCcchh--------------HHHHHHHHHHHH
Confidence 56677788888889999888887775443 223333222333333334333331 123334455667
Q ss_pred ccChHHHHHHHHHHHhc
Q 039362 412 FKRWDEARTTREAMETR 428 (440)
Q Consensus 412 ~g~~~~A~~~~~~~~~~ 428 (440)
.|+...|...++...+.
T Consensus 154 l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 154 LGNLRDANELFDTFTSK 170 (260)
T ss_dssp TTBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 78888888888777665
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.00 E-value=3.1 Score=27.11 Aligned_cols=46 Identities=15% Similarity=0.079 Sum_probs=34.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCch---HHHHHHHHHhccChHHHHHHH
Q 039362 377 NHGKLDLAEIVGKKLVELQPDHDGR---YVGLSNVYAIFKRWDEARTTR 422 (440)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~ 422 (440)
...+.++|+..|+++++..++.+.- +-.+..+|...|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888999999998877665553 445667788888888887764
No 372
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=82.61 E-value=63 Score=33.34 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=8.7
Q ss_pred CcchHHHHHHHHHhcCCHH
Q 039362 332 KSEHYACMVDALSRAGQVT 350 (440)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~ 350 (440)
+...-...+.++...|..+
T Consensus 788 d~~VR~aA~~aLg~~g~~~ 806 (897)
T PRK13800 788 DPLVRAAALAALAELGCPP 806 (897)
T ss_pred CHHHHHHHHHHHHhcCCcc
Confidence 3344444445555555433
No 373
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.51 E-value=58 Score=32.88 Aligned_cols=123 Identities=11% Similarity=0.097 Sum_probs=65.3
Q ss_pred hhhHHHHhhhcCCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcC---CCCCcchHHHHHHHhhchhcH--HHHHHHHH
Q 039362 13 IDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAG---VSPDHLTYPFLAKASGRLAKR--ELAVAVHA 87 (440)
Q Consensus 13 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~ 87 (440)
+++....+.+.. -|..|+..|...|+.++|+++|.+..... -.--...+..+++.+...+.. +-..+.-+
T Consensus 494 vee~e~~L~k~~-----~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~ 568 (877)
T KOG2063|consen 494 VEEIETVLKKSK-----KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYAD 568 (877)
T ss_pred hHHHHHHHHhcc-----cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhh
Confidence 444444444432 36778888888888888888888876631 001112244455555555544 55555544
Q ss_pred HHHHcCCCCcHHHHH------------HHHHHHHhcCCHHHHHHHhhCCCC----CchhhHHHHHHHHH
Q 039362 88 QIAKTGYESDLFISN------------SLIHMYGSCGDIVYAREVFDGMPT----KMSVSWNSMLDGYA 140 (440)
Q Consensus 88 ~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~ 140 (440)
...+..+.....++. ..+-.|......+-+..+++.+.. .+..-.+.++..|.
T Consensus 569 wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 569 WVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 444432211111111 122345566777777777777653 24445555555554
No 374
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.31 E-value=31 Score=31.17 Aligned_cols=52 Identities=12% Similarity=0.044 Sum_probs=23.6
Q ss_pred HHhcCCHHHHHHHHhhhhhc-CCchh--hHHHHHHHHHh--cCChHHHHHHHHHHHH
Q 039362 240 YAKCGAIKEALIVFHGVEKH-QSDVL--IWNAMIGGLAM--HGFVKESLELFTEMQI 291 (440)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~-~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~m~~ 291 (440)
+.+.+++..|.++|..+... .++.. .+..+..+|.. .-++.+|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33555666666666655543 22221 22333333332 3345555555555443
No 375
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=82.25 E-value=1.1 Score=40.18 Aligned_cols=98 Identities=16% Similarity=0.071 Sum_probs=70.3
Q ss_pred HHHHHcCCChHHHHHHHHHHhhcCCCCCcchH-HHHHHHHHhcCCHHHHHHHHhcC-CCCccH-hHHHHHHHHHHhcCCh
Q 039362 305 LSACAHGGLVMEAWYFFKSLGKRGMVPKSEHY-ACMVDALSRAGQVTEAYEFICQM-PLEPTA-SMLGSLLTGCMNHGKL 381 (440)
Q Consensus 305 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~ 381 (440)
+......+.++.|..++.++++. .|+...| ..-..++.+.+++..|+.-+.++ ...|.. ..|.-=..++...+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 44556778899999999999885 4654443 34447788889998888777766 656643 3344445567778888
Q ss_pred hHHHHHHHHHHhcCCCCCchHHH
Q 039362 382 DLAEIVGKKLVELQPDHDGRYVG 404 (440)
Q Consensus 382 ~~a~~~~~~~~~~~~~~~~~~~~ 404 (440)
.+|...|+......|+++.....
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHH
Confidence 89999999998898988754433
No 376
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=81.78 E-value=12 Score=24.97 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHH
Q 039362 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMA 148 (440)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (440)
+.++++.+.+.|+- +..-...+-.+-...|+.+.|.+++..+. +.+..|..++.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 33555555555533 22222222222223455666666666665 5555555555555555544333
No 377
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.40 E-value=32 Score=29.12 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=45.5
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhc
Q 039362 94 YESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKC 173 (440)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 173 (440)
..-++..+..+...|.+.|++..|+..|-.-.+++...+..++..+...|...++ +... ...+--|...
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----------dlfi-~RaVL~yL~l 154 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----------DLFI-ARAVLQYLCL 154 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------HHHH-HHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------hHHH-HHHHHHHHHh
Confidence 3456778888888888888888888877655544444443344433333333322 1111 1223345556
Q ss_pred CCHHHHHHHHHHHHhc
Q 039362 174 GDYKEALVIFEEMRDV 189 (440)
Q Consensus 174 ~~~~~a~~~~~~~~~~ 189 (440)
++...|...+....+.
T Consensus 155 ~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 155 GNLRDANELFDTFTSK 170 (260)
T ss_dssp TBHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 7777777776665443
No 378
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.20 E-value=23 Score=29.93 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=21.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCccHhhH
Q 039362 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301 (440)
Q Consensus 269 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 301 (440)
+..-..+.+++++|+..+.+....|+..+..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 334455667777777777777777766666543
No 379
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.03 E-value=30 Score=28.52 Aligned_cols=83 Identities=10% Similarity=-0.092 Sum_probs=43.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCch-hhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhH-HHHHHHHHhcCChHHH
Q 039362 205 CAHLGALDQGRMMLRYMIDKGLSLTL-PLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW-NAMIGGLAMHGFVKES 282 (440)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a 282 (440)
|....+++.|+..|.+.... .|+. .-|..=+.++.+..+++.+..--.+..+..||..-- -.+...+.....++.|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 33444566666655554443 2333 334555555666666666666555555555554332 2233344555566666
Q ss_pred HHHHHHH
Q 039362 283 LELFTEM 289 (440)
Q Consensus 283 ~~~~~~m 289 (440)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 6666655
No 380
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=80.84 E-value=26 Score=27.68 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=30.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC--------------CCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 039362 201 VLCACAHLGALDQGRMMLRYMIDKGL--------------SLTLPLQTSLIDMYAKCGAIKEALIVFH 254 (440)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 254 (440)
++-.|-+..++.++.++++.+.+..+ .+.-.+.+.....+.+.|.++.|+.+++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 44455566666777777766655432 2223344555555566666666665555
No 381
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.65 E-value=46 Score=30.52 Aligned_cols=113 Identities=8% Similarity=-0.003 Sum_probs=64.7
Q ss_pred chhcHHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCC---CchhhHHHHHHHHHhcCChHHHHH
Q 039362 75 RLAKRELAVA-VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT---KMSVSWNSMLDGYAKCGEMNMARQ 150 (440)
Q Consensus 75 ~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 150 (440)
..|+...|-+ ++..+....-.|+..... .......|+++.+.+.+..... ....+...+++...+.|++++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3455554443 333333332233333333 3345667888888887765543 355567778888888888888888
Q ss_pred HHhhCCCC---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 039362 151 VFELMPER---NVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189 (440)
Q Consensus 151 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (440)
+-..|... +...........-..|-++++...++++...
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 77766542 2222222223334456677777777776544
No 382
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.52 E-value=48 Score=30.58 Aligned_cols=44 Identities=14% Similarity=-0.004 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 039362 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412 (440)
Q Consensus 369 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (440)
....-.+...|++-.|.+.|.+.......+|..|..++.+|.-.
T Consensus 339 YNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 339 YNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445567788888888888888888878888888888877643
No 383
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.18 E-value=50 Score=30.65 Aligned_cols=177 Identities=11% Similarity=0.072 Sum_probs=123.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 039362 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238 (440)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (440)
|.....+++..+..+.++.-+..+..+|...| .+...|..++.+|... ..+.-..+++++.+.. -.|...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHH
Confidence 55567778888999999999999999998864 5677888999999887 6788889999998876 345555566666
Q ss_pred HHHhcCCHHHHHHHHhhhhhc-CC---c---hhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCccHhhHHHHHHHHHc
Q 039362 239 MYAKCGAIKEALIVFHGVEKH-QS---D---VLIWNAMIGGLAMHGFVKESLELFTEMQIV-GITPDEITFLGLLSACAH 310 (440)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~-~~---~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~ 310 (440)
.|-+ ++.+++..+|.++... -| + ...|..+... -..+.+....+..+.... |...-...+..+-..|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 6665 8888888888887643 11 1 1245555442 134666667666666543 333334556666677888
Q ss_pred CCChHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 039362 311 GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDAL 343 (440)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (440)
..++.+|++++..+.+.. ..|...-..++..+
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 889999999999888864 23544445555544
No 384
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=79.91 E-value=18 Score=26.49 Aligned_cols=42 Identities=10% Similarity=-0.089 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcC--CCCCchHHHHHHHHHhccChHHHHHHHHH
Q 039362 383 LAEIVGKKLVELQ--PDHDGRYVGLSNVYAIFKRWDEARTTREA 424 (440)
Q Consensus 383 ~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 424 (440)
.+..+|..|...+ ...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888888765 45555788888888899999999988865
No 385
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.48 E-value=8.8 Score=26.31 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=33.3
Q ss_pred HhcCChhHHHHHHHHHHhcCCC----C-----CchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 376 MNHGKLDLAEIVGKKLVELQPD----H-----DGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~~~~~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
.+.|++..|.+.+.+..+.... . ......++......|++++|...+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4677777776666666553311 1 112344566677788888888888877653
No 386
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=78.08 E-value=8.8 Score=25.65 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=26.3
Q ss_pred hcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHH
Q 039362 141 KCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEAL 180 (440)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 180 (440)
..|+.+.|.+++..++ ..+..|..++.++...|+-.-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4467777777777777 66667777777777666655443
No 387
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.80 E-value=52 Score=29.48 Aligned_cols=56 Identities=18% Similarity=0.080 Sum_probs=33.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hccChHHHHHHHHHHHh
Q 039362 372 LTGCMNHGKLDLAEIVGKKLVELQPD-HDGRYVGLSNVYA-IFKRWDEARTTREAMET 427 (440)
Q Consensus 372 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 427 (440)
+..+.+.|-+..|.++.+-+..++|. ||......++.|+ +++.++--.++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44455667777777777777777766 5555555555543 45666656666555443
No 388
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.58 E-value=38 Score=31.16 Aligned_cols=41 Identities=7% Similarity=0.045 Sum_probs=30.3
Q ss_pred ccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHH
Q 039362 40 KSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRE 80 (440)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (440)
..+.++...+.++.+...|.......++.....|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 46788888888888888877666666777777776666543
No 389
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.40 E-value=61 Score=30.03 Aligned_cols=101 Identities=13% Similarity=0.125 Sum_probs=72.1
Q ss_pred CccHhhH-HHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHH---hcCCHHHHHHHHhcC--CCCccHhHH
Q 039362 295 TPDEITF-LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS---RAGQVTEAYEFICQM--PLEPTASML 368 (440)
Q Consensus 295 ~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~--~~~p~~~~~ 368 (440)
.|+..|+ +.++.-+.+.|-..+|...+..+.... +|+...|..+++.-. .+| ...+..+++.+ .+..|+..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHH
Confidence 5665554 456666778899999999999998863 467777877776432 333 77788888887 333677888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh-cCCC
Q 039362 369 GSLLTGCMNHGKLDLAEIVGKKLVE-LQPD 397 (440)
Q Consensus 369 ~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~ 397 (440)
...+..-...|..+.+-.++-++.+ ++|.
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 8877777788998888777766655 3444
No 390
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.15 E-value=8.7 Score=35.83 Aligned_cols=88 Identities=16% Similarity=0.076 Sum_probs=71.6
Q ss_pred HHhcCCHHHHHHHHhcC-CCCccH--hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHH
Q 039362 343 LSRAGQVTEAYEFICQM-PLEPTA--SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEAR 419 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~~~-~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 419 (440)
....|+...|...+..+ ...|.. .....|.....+.|-...|-.++.+.+.+....|.++..++.++....+.+.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 34578899999988877 444522 344567777778888889999999999999888889999999999999999999
Q ss_pred HHHHHHHhcCC
Q 039362 420 TTREAMETRGV 430 (440)
Q Consensus 420 ~~~~~~~~~~~ 430 (440)
+.|++..+...
T Consensus 697 ~~~~~a~~~~~ 707 (886)
T KOG4507|consen 697 EAFRQALKLTT 707 (886)
T ss_pred HHHHHHHhcCC
Confidence 99999887643
No 391
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=76.98 E-value=4.8 Score=32.56 Aligned_cols=58 Identities=28% Similarity=0.330 Sum_probs=35.9
Q ss_pred HHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 039362 343 LSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (440)
..+.++.+.|.+++.+. ...| ....|-.+...--+.|+.+.|.+.|++..+++|++..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34556666666666665 4444 3355666666566667777777777777777766543
No 392
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.82 E-value=24 Score=25.63 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039362 181 VIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID 223 (440)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (440)
+.++.+...++.|+.......+++|.+.+++..|.++|+-+..
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444444555566666666666666666666666666665543
No 393
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.99 E-value=59 Score=29.19 Aligned_cols=15 Identities=0% Similarity=0.042 Sum_probs=9.2
Q ss_pred CChHHHHHHHHHHhh
Q 039362 312 GLVMEAWYFFKSLGK 326 (440)
Q Consensus 312 ~~~~~a~~~~~~~~~ 326 (440)
+++....++++++..
T Consensus 318 sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 318 SKYASCLELLREIKP 332 (466)
T ss_pred hhHHHHHHHHHHhcc
Confidence 556666666666544
No 394
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.88 E-value=82 Score=30.78 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=35.2
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhc-------HHHHHHHHHHHHHc
Q 039362 33 TVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK-------RELAVAVHAQIAKT 92 (440)
Q Consensus 33 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 92 (440)
.+|-.|.|.|.+++|.++.+..... .......+...+..+....+ -+....-|++....
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4666788888888888888554433 44556667777777765432 13444555555444
No 395
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=75.39 E-value=6 Score=33.52 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=23.2
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHH
Q 039362 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422 (440)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 422 (440)
+.|+.++|..+|+.+..+.|.++.++..++......++.-+|-.++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 4455555555555555555555555555544444444444444444
No 396
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.33 E-value=49 Score=33.00 Aligned_cols=178 Identities=16% Similarity=0.154 Sum_probs=112.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 039362 173 CGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIV 252 (440)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 252 (440)
+.++++++.+.+... -+. ..+|.-+.+.|.++-|+.+.+. ..+- ......+|+++.|++.
T Consensus 606 ~k~ydeVl~lI~ns~----LvG----qaiIaYLqKkgypeiAL~FVkD---------~~tR---F~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSN----LVG----QAIIAYLQKKGYPEIALHFVKD---------ERTR---FELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcC----ccc----HHHHHHHHhcCCcceeeeeecC---------cchh---eeeehhcCCHHHHHHH
Confidence 456666665554432 111 1234444566666666555332 1111 1234567999999887
Q ss_pred HhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCC
Q 039362 253 FHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPK 332 (440)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 332 (440)
-.++. +..+|..|+......|+.+-|+..|++... |..|--.|.-.|+.++-.++.+.+... .|
T Consensus 666 akkld----d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r---~D 729 (1202)
T KOG0292|consen 666 AKKLD----DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR---ND 729 (1202)
T ss_pred HHhcC----cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh---hh
Confidence 76655 677899999999999999999999987663 333333456678888777666555432 23
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039362 333 SEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ 395 (440)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 395 (440)
... ....-...|+.++-.++++..+..|-.. .....+|.-++|.++.++.-...
T Consensus 730 ~~~---~~qnalYl~dv~ervkIl~n~g~~~lay------lta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 730 ATG---QFQNALYLGDVKERVKILENGGQLPLAY------LTAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred hHH---HHHHHHHhccHHHHHHHHHhcCcccHHH------HHHhhcCcHHHHHHHHHhhcccc
Confidence 222 2223345789999999999887554221 12335788888999988887643
No 397
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=75.31 E-value=20 Score=25.97 Aligned_cols=44 Identities=5% Similarity=0.032 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCC
Q 039362 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP 125 (440)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 125 (440)
..+.++.+...++.|++.+....++++.+.+|+..|.++|+.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444455555555566666666666666666666666665554
No 398
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.77 E-value=34 Score=28.95 Aligned_cols=87 Identities=10% Similarity=0.015 Sum_probs=47.6
Q ss_pred HHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCC----CCchhhHHHHHHH----
Q 039362 67 PFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP----TKMSVSWNSMLDG---- 138 (440)
Q Consensus 67 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~---- 138 (440)
..-|++++..+++.++....-+-.+.--+..+.+...-|-.|.+.++...+.++-..-. ..+...|.+++..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 34466677777777766665554443222233444445556677777666655544322 1233345544443
Q ss_pred -HHhcCChHHHHHHHh
Q 039362 139 -YAKCGEMNMARQVFE 153 (440)
Q Consensus 139 -~~~~~~~~~a~~~~~ 153 (440)
+.-.|.+++|+++..
T Consensus 167 VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVV 182 (309)
T ss_pred HHhccccHHHHHHHHh
Confidence 355677888877773
No 399
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=74.46 E-value=9.9 Score=23.61 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=11.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 039362 268 AMIGGLAMHGFVKESLELFTEMQ 290 (440)
Q Consensus 268 ~l~~~~~~~~~~~~a~~~~~~m~ 290 (440)
.+|.++...|++++|.+.++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555554443
No 400
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=74.42 E-value=15 Score=27.54 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 039362 349 VTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414 (440)
Q Consensus 349 ~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (440)
.+.|.++.+-|| ...............|++..|.++.+.++..+|++...-...+.+|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 356677777774 234444556667789999999999999999999999888888888877654
No 401
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.35 E-value=1e+02 Score=31.00 Aligned_cols=217 Identities=14% Similarity=0.023 Sum_probs=103.3
Q ss_pred HhcCChHHHHHHHhhCCC----Cch-------hhHHHHH-HHHHhcCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHH
Q 039362 140 AKCGEMNMARQVFELMPE----RNV-------VSWSALI-DGYVKCGDYKEALVIFEEMRDV----GSKANEVTLVSVLC 203 (440)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~----~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 203 (440)
....++++|..+..++.. |+. ..++.+- ......|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 455677777777666532 211 1333332 2334567778877777665443 11223344555556
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhhHHH---H--HHHHHhcCC--HHHHHHHHhhhhhc----CC----chhhHHH
Q 039362 204 ACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS---L--IDMYAKCGA--IKEALIVFHGVEKH----QS----DVLIWNA 268 (440)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~g~--~~~A~~~~~~~~~~----~~----~~~~~~~ 268 (440)
+..-.|++++|..+.....+..-..+...+.. + ...+...|. +.+....|..+... +| -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 66667888888877776655432333333222 2 223444552 22333333333221 11 1122333
Q ss_pred HHHHHHhcCChHHHHHHHHHH----HHcCCCccHhhH--HHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcch-HHH---
Q 039362 269 MIGGLAMHGFVKESLELFTEM----QIVGITPDEITF--LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEH-YAC--- 338 (440)
Q Consensus 269 l~~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~--- 338 (440)
+..++.+ .+.+..-...- ......|-...+ ..|+......|+.++|...++++......++... |.+
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 3333333 23222222221 111112222222 2556666778888888888888776532332111 111
Q ss_pred HHH--HHHhcCCHHHHHHHHhcC
Q 039362 339 MVD--ALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 339 l~~--~~~~~~~~~~a~~~~~~~ 359 (440)
.++ .....|+.+.+.....+-
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhc
Confidence 111 223567777777666653
No 402
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=74.28 E-value=26 Score=24.84 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039362 161 VSWSALIDGYVKCGDYKEALVIFEEMRD 188 (440)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (440)
.-|..++..|...|.+++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3577888888888888888888888766
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.09 E-value=13 Score=29.73 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=30.0
Q ss_pred CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039362 360 PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQP 396 (440)
Q Consensus 360 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 396 (440)
...|++.++..++..+...|+.++|.+..+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4577888888888888888888888888888888777
No 404
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=73.34 E-value=74 Score=29.07 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=31.0
Q ss_pred HHHhcCCCCccHh--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039362 354 EFICQMPLEPTAS--MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 354 ~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (440)
.+|...+++|.+. +++.-+..+.+.+++..|..+.+++++++|+..
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 3444446777653 456667778899999999999999999988653
No 405
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=73.28 E-value=96 Score=30.34 Aligned_cols=398 Identities=11% Similarity=0.039 Sum_probs=198.2
Q ss_pred hHHHHHHHHHHH-ccCChhhHHHHHHHHHHcCCCCCcc-----hHHHHHHHhhchhcHHHHHHHHHHHHHcC----CCCc
Q 039362 28 IFYWNTVIRGYS-KSKNPNKSISLFVKMLRAGVSPDHL-----TYPFLAKASGRLAKRELAVAVHAQIAKTG----YESD 97 (440)
Q Consensus 28 ~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~ 97 (440)
..++-.+...+. ...+++.|...+++.....-.++.. ....++..+.+.+... |...++..++.- ..+-
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 446777777766 6889999999999875543222221 1234455555555444 888888876642 1222
Q ss_pred HHHHHHH-HHHHHhcCCHHHHHHHhhCCCC-----Cc--hhhHHHHHHHH--HhcCChHHHHHHHhhCCC----------
Q 039362 98 LFISNSL-IHMYGSCGDIVYAREVFDGMPT-----KM--SVSWNSMLDGY--AKCGEMNMARQVFELMPE---------- 157 (440)
Q Consensus 98 ~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~-----~~--~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~---------- 157 (440)
...+.-+ +..+...++...|.+.++.+.. .+ ...+-.++.+. .+.+..+++.+.++.+..
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 3334433 3333344799999998877642 22 22333444433 345556666666655421
Q ss_pred ---CchhhHHHHHHH--HHhcCCHHHHHHHHHHHHhc---C-CC--------------------------CCH-------
Q 039362 158 ---RNVVSWSALIDG--YVKCGDYKEALVIFEEMRDV---G-SK--------------------------ANE------- 195 (440)
Q Consensus 158 ---~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~---~-~~--------------------------~~~------- 195 (440)
|-..+|..+++. +...|+++.+...++++.+. . -. |..
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~ 297 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKE 297 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHH
Confidence 234566666554 45667777776666554221 0 00 001
Q ss_pred --HHHHHHHHH--HHhcCChHHHHHHHHHHHHc--------CCCCch--------hhHHH---------HHHHHHhcCCH
Q 039362 196 --VTLVSVLCA--CAHLGALDQGRMMLRYMIDK--------GLSLTL--------PLQTS---------LIDMYAKCGAI 246 (440)
Q Consensus 196 --~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~--------~~~~~~--------~~~~~---------l~~~~~~~g~~ 246 (440)
..+..++.+ .+..+..+++.+++++..+. ...++. ..+.. .+...+-.+++
T Consensus 298 ~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~ 377 (608)
T PF10345_consen 298 ELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDW 377 (608)
T ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 111122222 23334444665555554321 111111 11111 12223457889
Q ss_pred HHHHHHHhhhhhc---CCc-----hhhHHH--HHHHHHhcCChHHHHHHHH--------HHHHcCCCccHhhHHHH--HH
Q 039362 247 KEALIVFHGVEKH---QSD-----VLIWNA--MIGGLAMHGFVKESLELFT--------EMQIVGITPDEITFLGL--LS 306 (440)
Q Consensus 247 ~~A~~~~~~~~~~---~~~-----~~~~~~--l~~~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~~l--~~ 306 (440)
..|...+..+.+. .|+ ...+.. ..-.+-..|+.+.|...|. .....+..++...+..+ +.
T Consensus 378 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~ 457 (608)
T PF10345_consen 378 SKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAI 457 (608)
T ss_pred HHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHH
Confidence 8999888887743 222 112222 2223445699999999997 44444444444443332 11
Q ss_pred HHHc--CCChHH--HHHHHHHHhhc-CCCC--CcchHHHH-HHHHHhcC---------CHHHHHHHH-hcCCCCccHh-H
Q 039362 307 ACAH--GGLVME--AWYFFKSLGKR-GMVP--KSEHYACM-VDALSRAG---------QVTEAYEFI-CQMPLEPTAS-M 367 (440)
Q Consensus 307 ~~~~--~~~~~~--a~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~~---------~~~~a~~~~-~~~~~~p~~~-~ 367 (440)
.+.. .....+ ...+++.+... .-.| +..++..+ +.++.... .+.++++.. +..+..--.. +
T Consensus 458 I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~ 537 (608)
T PF10345_consen 458 ILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAIL 537 (608)
T ss_pred HhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 1222 222223 66666666543 1122 22222333 33332111 123444444 3332221122 2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCC-chHH-----HHHHHHHhccChHHHHHHHHHHHh
Q 039362 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQ---PDHD-GRYV-----GLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 368 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
++.+...+. .|+..+............ |+.. ..|. .+...+...|+.++|.....+...
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 333333333 788877666666655433 2222 2443 344457778999999998877643
No 406
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.12 E-value=16 Score=24.95 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=18.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC
Q 039362 370 SLLTGCMNHGKLDLAEIVGKKLVELQ 395 (440)
Q Consensus 370 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 395 (440)
.+.......|++++|...++++++.-
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34455567788888888888887754
No 407
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.31 E-value=13 Score=24.35 Aligned_cols=13 Identities=23% Similarity=0.041 Sum_probs=5.0
Q ss_pred HHHHHHHcCCChH
Q 039362 303 GLLSACAHGGLVM 315 (440)
Q Consensus 303 ~l~~~~~~~~~~~ 315 (440)
.++.+++..|++.
T Consensus 48 ~l~qA~~e~Gkyr 60 (80)
T PF10579_consen 48 YLIQAHMEWGKYR 60 (80)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 408
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.26 E-value=74 Score=28.62 Aligned_cols=59 Identities=15% Similarity=0.282 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC------CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 039362 131 SWNSMLDGYAKCGEMNMARQVFELMPE------RNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189 (440)
Q Consensus 131 ~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (440)
.+.-+...|..+|+++.|++.|.+..+ ..+..|-.+|..-.-.|+|..+.....+....
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 566778888999999999999988654 34556777788888889998888887776553
No 409
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=72.23 E-value=56 Score=27.19 Aligned_cols=18 Identities=11% Similarity=-0.008 Sum_probs=11.8
Q ss_pred HhcCChhHHHHHHHHHHh
Q 039362 376 MNHGKLDLAEIVGKKLVE 393 (440)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~ 393 (440)
-..|+.++|.++.+++.+
T Consensus 180 ei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 180 EILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HTSS-HHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHH
Confidence 357788888777777654
No 410
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=71.57 E-value=81 Score=28.78 Aligned_cols=64 Identities=16% Similarity=-0.066 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 367 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
-...|+.-|...|+..+|.+..+++---.-.+...+.+++.+.-+.|+-..-+.+++..-..|+
T Consensus 511 kI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 511 KIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 3567788888899999998888775433334445677888888888887777777777665544
No 411
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.55 E-value=14 Score=22.01 Aligned_cols=26 Identities=15% Similarity=-0.009 Sum_probs=13.0
Q ss_pred HHHHHhcCCHHHHHHHHhhhhhcCCc
Q 039362 237 IDMYAKCGAIKEALIVFHGVEKHQSD 262 (440)
Q Consensus 237 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 262 (440)
.-++.+.|++++|.+..+.+.+..|+
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 34445555555555555555555543
No 412
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=71.10 E-value=67 Score=27.64 Aligned_cols=49 Identities=16% Similarity=-0.045 Sum_probs=26.2
Q ss_pred CChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc---------------ChHHHHHHHHHHHhcCC
Q 039362 379 GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK---------------RWDEARTTREAMETRGV 430 (440)
Q Consensus 379 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~ 430 (440)
.+.++|...|.++.+.+. ......+. .+...| +...|...+......+.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 356666666666666665 33333333 333333 55566666665555443
No 413
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=70.81 E-value=80 Score=28.36 Aligned_cols=57 Identities=18% Similarity=0.076 Sum_probs=38.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHH-cCCChHHHHHHHHHHhh
Q 039362 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA-HGGLVMEAWYFFKSLGK 326 (440)
Q Consensus 270 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 326 (440)
|..+.+.|-+..|.++.+-+......-|+......|+.|+ +.++++--+.+.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4566778888888888888777653335655666666654 56777767777666544
No 414
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.01 E-value=21 Score=30.93 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=39.2
Q ss_pred HHHhcCCHHHHHHHHhcC--C--CCc--cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccCh
Q 039362 342 ALSRAGQVTEAYEFICQM--P--LEP--TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415 (440)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~--~--~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 415 (440)
-|.+..++..|...|.+. . -.| +...|+.-..+-...|++..++.=..+++..+|.+...|..-+.++....++
T Consensus 90 ~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~ 169 (390)
T KOG0551|consen 90 EYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERF 169 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHH
Confidence 344445555555555443 1 112 2233444444444455555566555666666666555555555555555554
Q ss_pred HHHHHH
Q 039362 416 DEARTT 421 (440)
Q Consensus 416 ~~A~~~ 421 (440)
++|...
T Consensus 170 ~~a~nw 175 (390)
T KOG0551|consen 170 AEAVNW 175 (390)
T ss_pred HHHHHH
Confidence 444433
No 415
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=69.81 E-value=43 Score=24.84 Aligned_cols=71 Identities=7% Similarity=0.034 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc
Q 039362 192 KANEVTLVSVLCACAHLG---ALDQGRMMLRYMIDKGLSLT-LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262 (440)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 262 (440)
.++..+-..+..++.+.. +..+.+.+++.+.+...+.. ....-.|.-++.+.++++.++++.+.+.+..||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 445555555566665554 34455667777765332222 223334555666777777777777766655544
No 416
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=69.58 E-value=16 Score=19.71 Aligned_cols=17 Identities=29% Similarity=0.216 Sum_probs=8.0
Q ss_pred HHHHHHhcCChhHHHHH
Q 039362 371 LLTGCMNHGKLDLAEIV 387 (440)
Q Consensus 371 l~~~~~~~g~~~~a~~~ 387 (440)
+...+-..|++++|+.+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33444455555555555
No 417
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.87 E-value=47 Score=25.00 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcC
Q 039362 262 DVLIWNAMIGGLAMHGF-VKESLELFTEMQIVGITPDEITFLGLLSACAHG 311 (440)
Q Consensus 262 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 311 (440)
+...|..++.+..+..- ---+..+|.-|.+.+.++++.-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 45567777777755444 234566677777766777777788888777653
No 418
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=68.44 E-value=1.3e+02 Score=29.75 Aligned_cols=187 Identities=11% Similarity=0.078 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHcCCCC---chhhHHHHHHHHHhcCCHHHHHHHHhhhhhcC--------Cch-hhHHHHHHHHHhcCCh
Q 039362 212 DQGRMMLRYMIDKGLSL---TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ--------SDV-LIWNAMIGGLAMHGFV 279 (440)
Q Consensus 212 ~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~ 279 (440)
++-..++.+|.++--.| +..+...++-.|....+++..+++.+.+.... +++ ..|.-.+.--.+.|+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 34445666666553333 34566677777888888888888888776532 111 1122222222345777
Q ss_pred HHHHHHHHHHHHcC--CCccHhh-----HHHH--HHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC-H
Q 039362 280 KESLELFTEMQIVG--ITPDEIT-----FLGL--LSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQ-V 349 (440)
Q Consensus 280 ~~a~~~~~~m~~~~--~~p~~~~-----~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 349 (440)
++|+...-.|.+.. +.||... |..+ -+.|...+..+.|.+.|++..+ +.|+...=-.+...+...|. +
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhc
Confidence 88888777776543 4555432 2111 1223445667788888888876 34544331112222222222 2
Q ss_pred HHHHHHHh------cC-CCCccH---hHHH---HHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 039362 350 TEAYEFIC------QM-PLEPTA---SMLG---SLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400 (440)
Q Consensus 350 ~~a~~~~~------~~-~~~p~~---~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (440)
+...++-. .+ +.+... ..|. ..+.+-.-.+++.+|++..+.|.++.|+...
T Consensus 338 ens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 338 ENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWY 401 (1226)
T ss_pred cchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceeh
Confidence 22222111 11 111111 1111 1223334578899999999999999988653
No 419
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=67.74 E-value=26 Score=29.42 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=49.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 370 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
.+=..+.+.++++.|....++.+..+|.++.-+.--+.+|.+.|.+.-|++-++..++..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 344567788899999999999999999998888888889999999888888888766654
No 420
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=67.68 E-value=32 Score=32.97 Aligned_cols=74 Identities=12% Similarity=-0.024 Sum_probs=43.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC--CCccHhhHHHHHHHHHcCCChHH------HHHHHHHHhhcCCCCCcchHHHH
Q 039362 268 AMIGGLAMHGFVKESLELFTEMQIVG--ITPDEITFLGLLSACAHGGLVME------AWYFFKSLGKRGMVPKSEHYACM 339 (440)
Q Consensus 268 ~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 339 (440)
.+..+|...|++-.+.++++.+.... -+.-...++..++...+.|.++- +-+.++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 67778888888888888888776542 12223456677777777776542 22222222 234466667666
Q ss_pred HHHHH
Q 039362 340 VDALS 344 (440)
Q Consensus 340 ~~~~~ 344 (440)
+++-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 55433
No 421
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.62 E-value=38 Score=23.37 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhH
Q 039362 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW 266 (440)
Q Consensus 214 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 266 (440)
..+.++++...+....+.....|.-.|.+.|+.+.|.+-|+.-...-|...+|
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 34455555555544444555566666777777777777666655445544444
No 422
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=67.30 E-value=47 Score=24.31 Aligned_cols=41 Identities=10% Similarity=-0.022 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcC--CCCCchHHHHHHHHHhccChHHHHHHHH
Q 039362 383 LAEIVGKKLVELQ--PDHDGRYVGLSNVYAIFKRWDEARTTRE 423 (440)
Q Consensus 383 ~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 423 (440)
+..++|..+...+ ......|...+..+...|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3567788777765 4445567888888888999999988885
No 423
>PRK10941 hypothetical protein; Provisional
Probab=67.02 E-value=68 Score=27.32 Aligned_cols=19 Identities=0% Similarity=-0.059 Sum_probs=7.5
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 039362 205 CAHLGALDQGRMMLRYMID 223 (440)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~ 223 (440)
+.+.++++.|..+.+.+..
T Consensus 191 ~~~~~~~~~AL~~~e~ll~ 209 (269)
T PRK10941 191 LMEEKQMELALRASEALLQ 209 (269)
T ss_pred HHHcCcHHHHHHHHHHHHH
Confidence 3333444444444433333
No 424
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=66.78 E-value=28 Score=26.31 Aligned_cols=63 Identities=10% Similarity=0.007 Sum_probs=43.1
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 039362 50 LFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113 (440)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 113 (440)
+.+.+.+.|+++++. -..++..+...++.-.|.++++.+.+.++..+..|-...+..+...|-
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 445566667666543 355666777676778888999999888877776665556666766663
No 425
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.95 E-value=11 Score=27.71 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=19.3
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 039362 41 SKNPNKSISLFVKMLRAGVSPDHLTYPFLAKA 72 (440)
Q Consensus 41 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 72 (440)
.|.-..|..+|++|...|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 35556677777777777766664 5555544
No 426
>PF13934 ELYS: Nuclear pore complex assembly
Probab=65.89 E-value=75 Score=26.22 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=10.2
Q ss_pred HHHHHHhcCCHHHHHHHHhcC
Q 039362 339 MVDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~ 359 (440)
++.++...|+.+.|+.+++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 444444445555555555544
No 427
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.74 E-value=9.6 Score=32.97 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039362 174 GDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI 222 (440)
Q Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (440)
|.++.|++.|...+..+ ++....|..-.+++.+.+++..|++=+....
T Consensus 128 G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ 175 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAI 175 (377)
T ss_pred cchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhh
Confidence 44444444444444332 2233333333334444444444444444333
No 428
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=64.59 E-value=1.1e+02 Score=27.68 Aligned_cols=51 Identities=22% Similarity=0.200 Sum_probs=27.9
Q ss_pred chhhHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 039362 159 NVVSWSALIDGYVKC---GDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209 (440)
Q Consensus 159 ~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 209 (440)
+...+..+++++.++ .+.+.|+-++-+|.+.|-.|....-..++-++...|
T Consensus 245 ~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 245 DGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 334444555555443 466666666667766665555554444444444433
No 429
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=64.46 E-value=99 Score=27.10 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=8.9
Q ss_pred HhcCChHHHHHHHHHHH
Q 039362 206 AHLGALDQGRMMLRYMI 222 (440)
Q Consensus 206 ~~~~~~~~a~~~~~~~~ 222 (440)
.+.++.++|.++++++.
T Consensus 86 ~~~~D~~~al~~Le~i~ 102 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKII 102 (380)
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34445555555555554
No 430
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.15 E-value=26 Score=21.74 Aligned_cols=19 Identities=11% Similarity=0.347 Sum_probs=7.2
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 039362 202 LCACAHLGALDQGRMMLRY 220 (440)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~ 220 (440)
+.++...|++++|.++++.
T Consensus 30 I~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3334444444444443333
No 431
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=63.26 E-value=54 Score=27.49 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=10.4
Q ss_pred HHHHHccCChhhHHHHHHH
Q 039362 35 IRGYSKSKNPNKSISLFVK 53 (440)
Q Consensus 35 ~~~~~~~~~~~~a~~~~~~ 53 (440)
++.+...|++..|+.-|+.
T Consensus 17 ~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 17 CRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 3555555555555555554
No 432
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.85 E-value=25 Score=28.10 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=16.7
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHhcC
Q 039362 330 VPKSEHYACMVDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (440)
.|+..+|..++.++...|+.++|.++.+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555555555555555555555554
No 433
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=62.70 E-value=1e+02 Score=26.64 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHH----------hcCCHHHH
Q 039362 283 LELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS----------RAGQVTEA 352 (440)
Q Consensus 283 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a 352 (440)
.++|+.|...++.|.-..|..+.-.+.+.=.+.+.+.+|+.+.... .-|..|+..|+ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 5678888888899998888888877888888889999999988742 22555555444 35777777
Q ss_pred HHHHhcCC
Q 039362 353 YEFICQMP 360 (440)
Q Consensus 353 ~~~~~~~~ 360 (440)
.++++...
T Consensus 338 mkLLQ~yp 345 (370)
T KOG4567|consen 338 MKLLQNYP 345 (370)
T ss_pred HHHHhcCC
Confidence 87777653
No 434
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=61.97 E-value=21 Score=23.83 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=14.3
Q ss_pred CHHHHHHHhhCCCCCchhhHHHHHHHHHhcC
Q 039362 113 DIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143 (440)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (440)
..+++.++++.++.+++.+|..+..++...|
T Consensus 45 r~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 45 RRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3444444444444444444444444444333
No 435
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.77 E-value=34 Score=23.55 Aligned_cols=29 Identities=24% Similarity=0.024 Sum_probs=15.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039362 371 LLTGCMNHGKLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 371 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (440)
|.-.|.+.|+.+.+.+-|+.=..+.|.+.
T Consensus 78 LGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 78 LGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 34445555555555555555555555554
No 436
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=61.37 E-value=16 Score=31.14 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=21.9
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCC
Q 039362 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAGVSP 61 (440)
Q Consensus 30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 61 (440)
-|+..|....+.|++++|+.++++..+.|+.-
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 46677777777777777777777777766543
No 437
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.93 E-value=22 Score=30.44 Aligned_cols=39 Identities=31% Similarity=0.463 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 039362 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVS 200 (440)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (440)
-|+..|....+.|++++|+.++++..+.|..--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 456778888888888888888888888876655555543
No 438
>PRK13342 recombination factor protein RarA; Reviewed
Probab=60.90 E-value=1.4e+02 Score=27.52 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=63.4
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCC-chhhHHHHHHHHHhcCChHHHHHHHhhCC---CCchhhHHHHHHHH
Q 039362 95 ESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK-MSVSWNSMLDGYAKCGEMNMARQVFELMP---ERNVVSWSALIDGY 170 (440)
Q Consensus 95 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 170 (440)
..+......++... .|+...+..+++.+... ... ..+...+++.... ..+...+..++.++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I-------------t~~~v~~~~~~~~~~~d~~~~~~~~~isa~ 237 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSI-------------TLELLEEALQKRAARYDKDGDEHYDLISAL 237 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC-------------CHHHHHHHHhhhhhccCCCccHHHHHHHHH
Confidence 44555555555533 68888887777654211 001 1222222222211 12223344555555
Q ss_pred Hh---cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCC
Q 039362 171 VK---CGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA-----LDQGRMMLRYMIDKGL 226 (440)
Q Consensus 171 ~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 226 (440)
.+ .++.+.|+.++..|.+.|..|....-..++.++...|. ..-|...++.....|.
T Consensus 238 ~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~ 301 (413)
T PRK13342 238 HKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGM 301 (413)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCC
Confidence 55 47899999999999999978776665555555544442 2233344444455554
No 439
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.36 E-value=1.5e+02 Score=27.65 Aligned_cols=82 Identities=18% Similarity=0.018 Sum_probs=41.8
Q ss_pred cCChhhHHHHHHHHHHc-CCCCCc-----chHHHHHHHhhchh-cHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHh
Q 039362 41 SKNPNKSISLFVKMLRA-GVSPDH-----LTYPFLAKASGRLA-KRELAVAVHAQIAKTG---YESDLFISNSLIHMYGS 110 (440)
Q Consensus 41 ~~~~~~a~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 110 (440)
..+++.|..-++..... ..-|+. .++..|...|.... .+..+..++.+.++.. +-........|+....-
T Consensus 60 T~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~i 139 (629)
T KOG2300|consen 60 TKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHII 139 (629)
T ss_pred hccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh
Confidence 56677777766664321 112222 23455555555544 5566666666665532 11222233345555555
Q ss_pred cCCHHHHHHHhh
Q 039362 111 CGDIVYAREVFD 122 (440)
Q Consensus 111 ~g~~~~a~~~~~ 122 (440)
..|+..|.+++.
T Consensus 140 dkD~~sA~elLa 151 (629)
T KOG2300|consen 140 DKDFPSALELLA 151 (629)
T ss_pred hccchhHHHHHh
Confidence 666666766654
No 440
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=59.99 E-value=18 Score=29.48 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=38.7
Q ss_pred HHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccH
Q 039362 308 CAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTA 365 (440)
Q Consensus 308 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~ 365 (440)
..+.++.+.+.+++.+....- +-....|-.+...-.+.|+++.|.+-+++. .+.|+.
T Consensus 5 ~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345677788888888777642 124556666777777888888888877776 555543
No 441
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.84 E-value=99 Score=28.16 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC-----------CchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039362 131 SWNSMLDGYAKCGEMNMARQVFELMPE-----------RNVVSWSALIDGYVKCGDYKEALVIFEEM 186 (440)
Q Consensus 131 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (440)
+...|++.++-.||+..|+++++.+.- -.+.++..+.-+|...+++.+|.+.|...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666665531 23445666777777778888888777765
No 442
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.66 E-value=34 Score=32.62 Aligned_cols=88 Identities=14% Similarity=0.016 Sum_probs=64.0
Q ss_pred HHhcCCHHHHHHHHhcC-CCCc-c------HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 039362 343 LSRAGQVTEAYEFICQM-PLEP-T------ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~~~-~~~p-~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (440)
..+..++..+.++|..- ..-| | ....+.|.-+|....+.|.|.++++++.+.+|.++-.-.....+....|+
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 34566777777777643 2111 1 23456677778888899999999999999998888777777778888899
Q ss_pred hHHHHHHHHHHHhcCC
Q 039362 415 WDEARTTREAMETRGV 430 (440)
Q Consensus 415 ~~~A~~~~~~~~~~~~ 430 (440)
.++|+..+......-.
T Consensus 444 Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 444 SEEALTCLQKIKSSED 459 (872)
T ss_pred hHHHHHHHHHHHhhhc
Confidence 9999888877765433
No 443
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=59.25 E-value=67 Score=26.97 Aligned_cols=56 Identities=11% Similarity=-0.082 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCC------CCchHHHHHHHHHhccChHHHHHHHHH
Q 039362 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPD------HDGRYVGLSNVYAIFKRWDEARTTREA 424 (440)
Q Consensus 369 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 424 (440)
..+...|...|++++|.++|+.+...... ...+...+..++.+.|+.++...+.=+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34555666677777777777766443221 112344555666666766666555433
No 444
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.06 E-value=69 Score=23.47 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCCcc-HhhHHHHHHHHHcCCChHHHHHHHHH
Q 039362 281 ESLELFTEMQIVGITPD-EITFLGLLSACAHGGLVMEAWYFFKS 323 (440)
Q Consensus 281 ~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 323 (440)
.+.++|+.|...|+--. +.-|......+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55555555555543332 22344444445555555555555543
No 445
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=58.95 E-value=12 Score=27.41 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=24.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHH
Q 039362 275 MHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308 (440)
Q Consensus 275 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 308 (440)
..|.-..|..+|+.|.+.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345667899999999999988875 66666543
No 446
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=58.58 E-value=1.3e+02 Score=26.51 Aligned_cols=56 Identities=7% Similarity=0.062 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHH
Q 039362 215 RMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIG 271 (440)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 271 (440)
..+++++++.+ +.+......++..+.+..+.++..+.++++....| +...|...+.
T Consensus 51 lsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~ 107 (321)
T PF08424_consen 51 LSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLD 107 (321)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34444444443 34444444444444444444444444444443333 2333443333
No 447
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=58.55 E-value=55 Score=22.22 Aligned_cols=32 Identities=22% Similarity=0.197 Sum_probs=14.4
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 039362 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258 (440)
Q Consensus 227 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 258 (440)
|.|...-..+...+...|++++|++.+-.+.+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444444455555555555555444443
No 448
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.14 E-value=1.7e+02 Score=27.84 Aligned_cols=115 Identities=11% Similarity=0.068 Sum_probs=69.8
Q ss_pred cCChhhHHHHhhhcC---CC------------ChHHHHHHHHHHHccCChhhHHHHHHHHH-------HcCCCC------
Q 039362 10 LGNIDYSCKVLSHLS---NP------------RIFYWNTVIRGYSKSKNPNKSISLFVKML-------RAGVSP------ 61 (440)
Q Consensus 10 ~g~~~~A~~~~~~~~---~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~------ 61 (440)
..-+++|.+-|.-.. +| .+.+.-.+...+...|+.+.|.++.++.+ ...+.|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 355667777665322 11 23345556667888898887777777643 111222
Q ss_pred -------CcchHHHH---HHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-hcCCHHHHHHHhhCC
Q 039362 62 -------DHLTYPFL---AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYG-SCGDIVYAREVFDGM 124 (440)
Q Consensus 62 -------~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 124 (440)
|...|..| +..+.+.|.+..|.++-+.+.+..+.-|+.....+|+.|+ +..++.-.+++++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 12223333 2345677888888888888887776667777777777664 556676666666554
No 449
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=57.86 E-value=22 Score=30.43 Aligned_cols=76 Identities=4% Similarity=0.015 Sum_probs=47.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 039362 332 KSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGS-LLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSN 407 (440)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 407 (440)
|+..|...+....+.|.+.+...++.+. ...| |+..|-. -..-+...++++.+..+|.+.++.+|.+|..|.....
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 4555555554444556666666666665 3344 4444432 2233556788888888999999988888887765443
No 450
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=57.17 E-value=69 Score=24.20 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=37.3
Q ss_pred HHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC
Q 039362 285 LFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQ 348 (440)
Q Consensus 285 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (440)
+.+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 344555667666553 234555566666667888888888877655554444444455555553
No 451
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.81 E-value=1.2e+02 Score=25.40 Aligned_cols=61 Identities=13% Similarity=-0.011 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039362 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292 (440)
Q Consensus 232 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 292 (440)
.+.....++...|++-++++.-.++....| ++..|-.-..+.+..-+.++|..=|....+.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 344455566666666666666666665544 4555666666666666667777666666654
No 452
>PRK14700 recombination factor protein RarA; Provisional
Probab=56.64 E-value=1.3e+02 Score=25.99 Aligned_cols=122 Identities=14% Similarity=0.105 Sum_probs=69.9
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCC---CchhhHHHHHHHHHhcCChHHHHHHHhhC-C--CCchhhHHHHH
Q 039362 94 YESDLFISNSLIHMYGSCGDIVYAREVFDGMPT---KMSVSWNSMLDGYAKCGEMNMARQVFELM-P--ERNVVSWSALI 167 (440)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~--~~~~~~~~~l~ 167 (440)
+..+......++.. ..||...|+..++.+.. .+.... =..+...++..+- . +.+...+..++
T Consensus 63 ~~i~~~al~~ia~~--a~GDaR~aLN~LE~a~~~~~~~~~~~----------it~~~~~~~~~~~~~~yDk~gd~HYd~i 130 (300)
T PRK14700 63 FKIDDGLYNAMHNY--NEGDCRKILNLLERMFLISTRGDEIY----------LNKELFDQAVGETSRDFHREGKEFYEQL 130 (300)
T ss_pred CCcCHHHHHHHHHh--cCCHHHHHHHHHHHHHhhccccCCCc----------cCHHHHHHHHhHHHhcccCCcchhHHHH
Confidence 34556666665553 45888888877766321 000000 0122222222211 1 13344455567
Q ss_pred HHHHh---cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCC
Q 039362 168 DGYVK---CGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA-----LDQGRMMLRYMIDKGLS 227 (440)
Q Consensus 168 ~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 227 (440)
+++.+ ..+.+.|+-++.+|++.|..|....-..++.+...-|. ...|...++.....|+|
T Consensus 131 SAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 131 SAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred HHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 77765 46889999999999999988877777777777766663 33445555556666643
No 453
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=56.47 E-value=1.1e+02 Score=25.09 Aligned_cols=96 Identities=18% Similarity=0.139 Sum_probs=49.0
Q ss_pred CccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCC---CcchHH--HHHHHHHhcCCHHHHHHHHhcCC---CCccHh
Q 039362 295 TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP---KSEHYA--CMVDALSRAGQVTEAYEFICQMP---LEPTAS 366 (440)
Q Consensus 295 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~---~~p~~~ 366 (440)
.+...-++.|+--|.-...+.+|...|..- .|+.| +...++ .-|+.....|+.++|++..+... +..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 444445555555555444555555544432 23444 222222 34556677788888888777761 222322
Q ss_pred HHHHHH----HHHHhcCChhHHHHHHHHHH
Q 039362 367 MLGSLL----TGCMNHGKLDLAEIVGKKLV 392 (440)
Q Consensus 367 ~~~~l~----~~~~~~g~~~~a~~~~~~~~ 392 (440)
.+-.|. --..+.|..++|+++.+.=.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 222221 12346677777777666543
No 454
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=55.96 E-value=1.4e+02 Score=26.11 Aligned_cols=151 Identities=14% Similarity=0.058 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCC----CccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 039362 280 KESLELFTEMQIVGI----TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355 (440)
Q Consensus 280 ~~a~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (440)
+.|.+.|+.....+. ..++.....++....+.|+.+.-..+++.... .++......++.+++...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 345556666555311 12223333344444455554444444444433 22444455566666666555555555
Q ss_pred HhcC--C--CCccHhHHHHHHHHHHhcCCh--hHHHHH----HHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHH
Q 039362 356 ICQM--P--LEPTASMLGSLLTGCMNHGKL--DLAEIV----GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAM 425 (440)
Q Consensus 356 ~~~~--~--~~p~~~~~~~l~~~~~~~g~~--~~a~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 425 (440)
++.. + +++ ... ..++.++...+.. +.+... |+.+.+.-+........++..+...-..++-.+-+++.
T Consensus 224 l~~~l~~~~v~~-~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f 301 (324)
T PF11838_consen 224 LDLLLSNDKVRS-QDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEF 301 (324)
T ss_dssp HHHHHCTSTS-T-TTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHH
T ss_pred HHHHcCCccccc-HHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 5544 1 221 222 2233333322222 333322 33333444444444445554444445556666666666
Q ss_pred HhcCCccCCC
Q 039362 426 ETRGVKKYPG 435 (440)
Q Consensus 426 ~~~~~~~~~~ 435 (440)
.+....+.|+
T Consensus 302 ~~~~~~~~~~ 311 (324)
T PF11838_consen 302 FEDKPKPPPG 311 (324)
T ss_dssp HHHHCTCCCT
T ss_pred HhhCcCCChH
Confidence 6433333333
No 455
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.81 E-value=1.6e+02 Score=26.71 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=39.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHH--hcCChHHHHHHHHHHHHc
Q 039362 167 IDGYVKCGDYKEALVIFEEMRDVGSKANEV--TLVSVLCACA--HLGALDQGRMMLRYMIDK 224 (440)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 224 (440)
+..+...+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556788999999999998876 555544 3444555553 455788888888887655
No 456
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.25 E-value=40 Score=19.57 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=16.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 039362 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVL 202 (440)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 202 (440)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555544443
No 457
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=54.72 E-value=39 Score=30.96 Aligned_cols=97 Identities=15% Similarity=0.081 Sum_probs=55.7
Q ss_pred HHHHhcCChHHHHHHHhhCCC--Cc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChH
Q 039362 137 DGYAKCGEMNMARQVFELMPE--RN-VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN-EVTLVSVLCACAHLGALD 212 (440)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 212 (440)
..+...+.++.|..++.++.+ || ...|..-..++.+.+++..|+.-..+.++.. |+ ...|..-..++.+.+.+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHH
Confidence 344566777777777777765 33 2334444467777777777777776666553 32 223333344555556666
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHH
Q 039362 213 QGRMMLRYMIDKGLSLTLPLQTSLI 237 (440)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~l~ 237 (440)
+|...|+..... .|+..-....+
T Consensus 90 ~A~~~l~~~~~l--~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 90 KALLDLEKVKKL--APNDPDATRKI 112 (476)
T ss_pred HHHHHHHHhhhc--CcCcHHHHHHH
Confidence 777666666543 34444333333
No 458
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=54.52 E-value=1.2e+02 Score=25.02 Aligned_cols=115 Identities=17% Similarity=0.081 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-ccHh--hHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 039362 266 WNAMIGGLAMHGFVKESLELFTEMQIVGIT-PDEI--TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDA 342 (440)
Q Consensus 266 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (440)
+..++--....|+++.|+++..-+++.|.+ |+.+ ++-+++. ++....-....+.|-..+......+...
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va--------eev~~~A~~~~~ag~~~e~~~~~~~~~l 157 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA--------EEVANAALKAASAGESVEPYFLRVFLDL 157 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH--------HHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 444445566789999999999999888843 3321 2222211 1111122222233432233222221111
Q ss_pred HHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHH---------HhcCChhHHHHHHHHHHhcCCCCC
Q 039362 343 LSRAGQVTEAYEFICQMPLEPTASMLGSLLTGC---------MNHGKLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~~~~~~~ 399 (440)
-... .|.-......|......+ ...++...|..+++++.+++|.-.
T Consensus 158 ~~~~-----------dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 158 TTEW-----------DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HhcC-----------CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 1111 111112233444555555 245577889999999999997754
No 459
>PRK09857 putative transposase; Provisional
Probab=53.99 E-value=1.3e+02 Score=26.06 Aligned_cols=63 Identities=14% Similarity=0.084 Sum_probs=45.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCCcc
Q 039362 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432 (440)
Q Consensus 370 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 432 (440)
.++.-....|+.++-.++++.+.+..|.......+++.-+.+.|.-+++.++..+|...|+..
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 344333456777777777777776666666667778888888888888888889998888753
No 460
>PF15469 Sec5: Exocyst complex component Sec5
Probab=53.47 E-value=88 Score=24.69 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=16.4
Q ss_pred cChHHHHHHHHHHHhcCCccCCCCCCC
Q 039362 413 KRWDEARTTREAMETRGVKKYPGWSFV 439 (440)
Q Consensus 413 g~~~~A~~~~~~~~~~~~~~~~~~~~~ 439 (440)
...++..+++..+.+.++..+|.|-|+
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 345556666666666666666666665
No 461
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.42 E-value=1.1e+02 Score=24.17 Aligned_cols=68 Identities=10% Similarity=0.010 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCCC-------chhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCCh
Q 039362 211 LDQGRMMLRYMIDKGLSL-------TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV 279 (440)
Q Consensus 211 ~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 279 (440)
++.|..+++.+.+.-..| ...+-...+..|.+.|.+++|.+++++..+ .|+......-+....+.++.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccc
No 462
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=53.12 E-value=2e+02 Score=29.99 Aligned_cols=195 Identities=10% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHH----
Q 039362 165 ALIDGYVKCGDYKEALVIFEEM---RDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI---- 237 (440)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 237 (440)
..++.+...+++.+|..+.++= ...=+.-+...|..=+..+.++=+--.-+.+|-.-++.. ..+...|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E-Dvt~tmY~~~~~~~~ 777 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNE-DVTKTMYKDTYPPSS 777 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccc-ccccccccccccccc
Q ss_pred --------HHHHhcCCHHHHHHHHhhhhh-cCCchhhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCccHhhHHHHHH
Q 039362 238 --------DMYAKCGAIKEALIVFHGVEK-HQSDVLIWNAMIGGLAMHG--FVKESLELFTEMQIVGITPDEITFLGLLS 306 (440)
Q Consensus 238 --------~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 306 (440)
......++....-+.+..... ......-...++.+|++.+ ++++|+.+..++.+.+...-......++-
T Consensus 778 ~~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~f 857 (928)
T PF04762_consen 778 EAQPNSNSSTASSESKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCF 857 (928)
T ss_pred ccccccccCCCccccHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHhee
Q ss_pred HHHcCCChHHHHHHHH----HHhhcCCCCCcchHHHHHHHH-------------HhcCCHHHHHHHHhcCC
Q 039362 307 ACAHGGLVMEAWYFFK----SLGKRGMVPKSEHYACMVDAL-------------SRAGQVTEAYEFICQMP 360 (440)
Q Consensus 307 ~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~ 360 (440)
..--..-++.|+-.|+ .|....-..|+.-|.-.++.+ ...+++++|++.+.++|
T Consensus 858 LvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~G 928 (928)
T PF04762_consen 858 LVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSACG 928 (928)
T ss_pred eccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhhC
No 463
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=53.00 E-value=1.6e+02 Score=28.53 Aligned_cols=247 Identities=14% Similarity=0.041 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH-HHHHH
Q 039362 42 KNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIV-YAREV 120 (440)
Q Consensus 42 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~ 120 (440)
+..+.-..+++...+. .++|...-.-.+-...-.|++..+++....+.. |..+-..+.+.+...|-++ .-..-
T Consensus 277 ~~~e~l~~~a~~~~~~-~~~~~~~~~e~~~~~i~~~d~~~vL~~~~~~~~-----~~w~aahladLl~~~g~L~~~~~~~ 350 (566)
T PF07575_consen 277 KPFELLHEYAQSCLEE-FPPDSTNPLEQILLAIFEGDIESVLKEISSLFD-----DWWFAAHLADLLEHKGLLEDSEQED 350 (566)
T ss_dssp --TTTHHHHHHHHHHH-S---TTSTTHHHHHHHHTS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS--SS---
T ss_pred chhhhHHHHHHHHHhc-CCCCCCCHHHHHHHHHHccCHHHHHHHHHHHcc-----chhHHHHHHHHHHhcCccccccccc
Q ss_pred hhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC---------------CchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039362 121 FDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE---------------RNVVSWSALIDGYVKCGDYKEALVIFEE 185 (440)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (440)
+....-++.....---..+...+-|+-|..++....+ ++...-..++..|.+.|-.+.+.++.+.
T Consensus 351 ~~~~~lre~~ll~YA~~L~s~~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~ 430 (566)
T PF07575_consen 351 FGGSSLREYLLLEYASSLMSHHSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKI 430 (566)
T ss_dssp --TS-HHHHHHHHHHHHHHT-TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhcCcchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhh
Q 039362 186 MRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLI 265 (440)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 265 (440)
+-.. .....-|...+.-+.+.|+...+..+.+.+.+.....+......++.......-....+..+.+..+
T Consensus 431 ~~~~--~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yre------- 501 (566)
T PF07575_consen 431 LGQR--LLKEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYRE------- 501 (566)
T ss_dssp HHHH--HHHHHHHHHHHHHHH-----------------------------------------------------------
T ss_pred HHHH--HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHH-------
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHH
Q 039362 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA 307 (440)
Q Consensus 266 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 307 (440)
.....+.|++.+|.+.+-.+......|...-...|.++
T Consensus 502 ----F~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 502 ----FYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ------------------------------------------
T ss_pred ----HHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
No 464
>PHA02875 ankyrin repeat protein; Provisional
Probab=52.45 E-value=1.9e+02 Score=26.51 Aligned_cols=202 Identities=10% Similarity=-0.004 Sum_probs=97.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh--hHHHHHHHHHhcC
Q 039362 169 GYVKCGDYKEALVIFEEMRDVGSKANEVT--LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLP--LQTSLIDMYAKCG 244 (440)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 244 (440)
..+..|+.+-+ +.+.+.|..|+... -.+.+...+..|+.+-+ +.+.+.|..++.. .....+...+..|
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 34556777554 44455677766432 22344455567776544 4445556444322 1123445566788
Q ss_pred CHHHHHHHHhhhhhc--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhH--HHHHHHHHcCCChHHHHHH
Q 039362 245 AIKEALIVFHGVEKH--QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF--LGLLSACAHGGLVMEAWYF 320 (440)
Q Consensus 245 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~ 320 (440)
+.+.+..+++.-... ..+....+. +...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+-+..+
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 888877777643211 111112222 3333455665 355555666766654321 1233344456776554444
Q ss_pred HHHHhhcCCCCC---cchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHh---HHHHHHHHHHhcCChhHHHHHHH
Q 039362 321 FKSLGKRGMVPK---SEHYACMVDALSRAGQVTEAYEFICQMPLEPTAS---MLGSLLTGCMNHGKLDLAEIVGK 389 (440)
Q Consensus 321 ~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~ 389 (440)
.+.|..++ ..-.+.+ ...+..|+.+-+.-+++. +..|+.. .....+......|+.+-+.-+++
T Consensus 155 ----l~~g~~~~~~d~~g~TpL-~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 155 ----IDHKACLDIEDCCGCTPL-IIAMAKGDIAICKMLLDS-GANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred ----HhcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 34443332 2222333 334456776665555554 3333221 11234443446677665544444
No 465
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=52.30 E-value=1.3e+02 Score=24.69 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=28.9
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC---chhhH--HHHHHHHHhcCChHHHHHHHHHHH
Q 039362 228 LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS---DVLIW--NAMIGGLAMHGFVKESLELFTEMQ 290 (440)
Q Consensus 228 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~m~ 290 (440)
+...-++.|+--|.-...+.+|-..|..-....| +..++ ..-|......|+.+.|++....+.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 3344444554444444444445555544333222 22222 233444555666666666655544
No 466
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=51.97 E-value=1e+02 Score=23.29 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHcC-----CCCCcchHHHHHHHhhchhc-HHHHHHHHHHHHHcCCCCcHHHHH
Q 039362 29 FYWNTVIRGYSKSKNPNKSISLFVKMLRAG-----VSPDHLTYPFLAKASGRLAK-RELAVAVHAQIAKTGYESDLFISN 102 (440)
Q Consensus 29 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 102 (440)
...|.++......+++...+.+++.+..-. -..+...|..++...+.... ---+..+|..+.+.+.++++.-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 357888888889999999999888874321 12456779999999876665 445778888888888899999999
Q ss_pred HHHHHHHhc
Q 039362 103 SLIHMYGSC 111 (440)
Q Consensus 103 ~l~~~~~~~ 111 (440)
.++.++.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 999987765
No 467
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.47 E-value=1.7e+02 Score=25.41 Aligned_cols=86 Identities=7% Similarity=0.142 Sum_probs=51.5
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHH----------HhcCChHHHHHHHh
Q 039362 84 AVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY----------AKCGEMNMARQVFE 153 (440)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~a~~~~~ 153 (440)
++++.+.+.++.|.-..+.-+.-.+.+.=.+.+.+.+|+.+..... -|..|+..| .-.|++..-.++++
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ 342 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-RFDFLLYICCSMLILVRERILEGDFTVNMKLLQ 342 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-hhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 5666666667777766666666666666677777777776654211 133333333 34577777777777
Q ss_pred hCCCCchhhHHHHHHHH
Q 039362 154 LMPERNVVSWSALIDGY 170 (440)
Q Consensus 154 ~~~~~~~~~~~~l~~~~ 170 (440)
.-+..|+...-.++..+
T Consensus 343 ~yp~tdi~~~l~~A~~L 359 (370)
T KOG4567|consen 343 NYPTTDISKMLAVADSL 359 (370)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 76655555444444443
No 468
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.48 E-value=2.4e+02 Score=26.95 Aligned_cols=153 Identities=16% Similarity=0.081 Sum_probs=74.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHH-cCCChHHHHHHHHHHhhc---CCCCCcchHHHHHHHHHh
Q 039362 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA-HGGLVMEAWYFFKSLGKR---GMVPKSEHYACMVDALSR 345 (440)
Q Consensus 270 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 345 (440)
|..+.+.|-+..|.++.+-+......-|+.....+|+.|+ ++.+++-.+++++..... ..-|+-..-.+++..|..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 3455666777777777777766543335555555666553 556677777776666443 223443333445555554
Q ss_pred cCC---HHHHHHHHhcC-CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcc----Ch
Q 039362 346 AGQ---VTEAYEFICQM-PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ--PDHDGRYVGLSNVYAIFK----RW 415 (440)
Q Consensus 346 ~~~---~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g----~~ 415 (440)
... -..|...+.++ ...| ..+..|+..+.-. +.|..---++.... -+...++..++..|.... +.
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~P--~vl~eLld~~~l~---~da~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~~~vWk~ 503 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHHP--LVLSELLDELLLG---DDALTKDLKFDGSSAENSELPALMLLVKLYANRNEEVWKL 503 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhCc--HHHHHHHHhccCC---chhhhhhhcccccccccccchHHHHHHHHHHhhhhHhhcC
Confidence 444 33444444444 2222 2233444433221 11111111111111 112236777777776543 23
Q ss_pred HHHHHHHHHHHh
Q 039362 416 DEARTTREAMET 427 (440)
Q Consensus 416 ~~A~~~~~~~~~ 427 (440)
.++...++....
T Consensus 504 P~~ls~l~~~~~ 515 (665)
T KOG2422|consen 504 PDVLSFLESAYH 515 (665)
T ss_pred hHHHHHHHHHHH
Confidence 355555555554
No 469
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.02 E-value=51 Score=29.88 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHhhc------CCCC-CcchHHHHHHHHHhcCCHHHHHHHHhcC
Q 039362 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKR------GMVP-KSEHYACMVDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (440)
.+...|++.++-.|++..|+++++.+.-. .+.+ ...++..+.-+|.-.+++.+|.+.|...
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888899999999998866432 1112 4556778889999999999999999865
No 470
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=48.88 E-value=1.9e+02 Score=25.50 Aligned_cols=114 Identities=13% Similarity=0.032 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh---cCCHHHHHHHH
Q 039362 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSR---AGQVTEAYEFI 356 (440)
Q Consensus 280 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 356 (440)
+.-+.+++++.+.+ +.+......++..+.+..+.+...+-++++.... .-+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34445555555542 2333444455555555555555566666665542 1134444444443322 11233333333
Q ss_pred hcC---------CC------Cc--cH---hHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039362 357 CQM---------PL------EP--TA---SMLGSLLTGCMNHGKLDLAEIVGKKLVELQ 395 (440)
Q Consensus 357 ~~~---------~~------~p--~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 395 (440)
.+. +. .+ +. .++..+...+.+.|..+.|..+++.+++.+
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 322 10 01 11 223333444567999999999999999977
No 471
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=47.72 E-value=67 Score=19.96 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=8.8
Q ss_pred HHhcCCHHHHHHHHhcC
Q 039362 343 LSRAGQVTEAYEFICQM 359 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~~~ 359 (440)
+.+.|++-+|.++++..
T Consensus 9 l~n~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEEL 25 (62)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHH
Confidence 33455566666665555
No 472
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=47.64 E-value=1.1e+02 Score=22.27 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH-------HhcCCCCCchHH----HHHHHHHhccChHHHHHHHHHH
Q 039362 368 LGSLLTGCMNHGKLDLAEIVGKKL-------VELQPDHDGRYV----GLSNVYAIFKRWDEARTTREAM 425 (440)
Q Consensus 368 ~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~ 425 (440)
+..|..++...|++++++.-.+.+ -+++.+....|. .-+.++...|+.++|...|+..
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 334445555566555544333333 334444333333 2334556678888887777654
No 473
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=47.39 E-value=2.2e+02 Score=25.85 Aligned_cols=23 Identities=4% Similarity=0.066 Sum_probs=10.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcC
Q 039362 337 ACMVDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~ 359 (440)
|.|++.|...+.++.|..+..+.
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~ 235 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKS 235 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcc
Confidence 34444444444444444444443
No 474
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=46.72 E-value=3.2e+02 Score=27.51 Aligned_cols=75 Identities=16% Similarity=0.083 Sum_probs=45.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 039362 171 VKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA-----LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245 (440)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 245 (440)
++.++++.|+.++.+|.+.|..|....-..++.+....|. ..-+...+......|+|--........-.++..-+
T Consensus 269 irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apK 348 (725)
T PRK13341 269 LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQAALYLATAPK 348 (725)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCC
Confidence 3468999999999999999988776665555555545453 23344555566666755444443333333343333
No 475
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=46.39 E-value=1.2e+02 Score=23.74 Aligned_cols=60 Identities=5% Similarity=-0.123 Sum_probs=34.0
Q ss_pred HHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 039362 54 MLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114 (440)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 114 (440)
+.+.|+.++..- ..++..+...++.-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344455444332 334444444455556777777777776666666555556666666654
No 476
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=46.22 E-value=2.3e+02 Score=25.63 Aligned_cols=93 Identities=14% Similarity=0.203 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCc--------cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc-------hH
Q 039362 338 CMVDALSRAGQVTEAYEFICQMPLEP--------TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG-------RY 402 (440)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~p--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~ 402 (440)
.|.+.+-..|++++|..++.+..+.. -+.....-++.|...+|+-.|.-+-+++....-..+. .|
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY 215 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYY 215 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHH
Confidence 45566777888888888887763211 1111222345566777888887777776654422221 35
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 403 VGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 403 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
..++......+.+=.+-+.++.+..-|.
T Consensus 216 ~lmI~l~lh~~~Yl~v~~~Yraiy~t~~ 243 (439)
T KOG1498|consen 216 ELMIRLGLHDRAYLNVCRSYRAIYDTGN 243 (439)
T ss_pred HHHHHhcccccchhhHHHHHHHHhcccc
Confidence 5566666667777777777777665543
No 477
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=46.21 E-value=90 Score=23.12 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=22.3
Q ss_pred CccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039362 362 EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 362 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (440)
.+|......++. +...|+++.|+.+.+.+++.+-.-|
T Consensus 46 ~qd~Vl~~~mvW-~~D~Gd~~~AL~~a~yAi~~~l~~P 82 (132)
T PF05944_consen 46 AQDDVLMTVMVW-LFDVGDFDGALDIAEYAIEHGLPMP 82 (132)
T ss_pred CcCchHHhhHhh-hhcccCHHHHHHHHHHHHHcCCCcc
Confidence 344433333333 4577888888888888887773333
No 478
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.66 E-value=2.1e+02 Score=25.20 Aligned_cols=117 Identities=11% Similarity=0.094 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHcCCCccHhhHHHHHHHHH------cCCChHHHHHHHHHHhhcCCCCCcc-hHHHHHHHHHhcCCHHH
Q 039362 279 VKESLELFTEMQIVGITPDEITFLGLLSACA------HGGLVMEAWYFFKSLGKRGMVPKSE-HYACMVDALSRAGQVTE 351 (440)
Q Consensus 279 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 351 (440)
++++..++.+....+ .|.+......|.++- ..-+|.....+|+.+.... |++. +.|-. -+..+..-.+.
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a--pSPvV~LNRA-VAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA--PSPVVTLNRA-VALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC--CCCeEeehHH-HHHHHhhhHHh
Confidence 567888888887777 478877777777663 2346778888888887754 4433 33332 23444455666
Q ss_pred HHHHHhcCCCCccH----hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039362 352 AYEFICQMPLEPTA----SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 352 a~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (440)
++...+-++-.|.. ..+..-...+.+.|+.++|...|++++.+.++..
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 67776666433322 2223334557788999999999999888776543
No 479
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.30 E-value=1.6e+02 Score=29.81 Aligned_cols=98 Identities=11% Similarity=0.051 Sum_probs=59.1
Q ss_pred cccccccCChhhHHHHhhhcC----------CCChHHHHHHHHHHH---------------ccCChhhHHHHHHHHHHcC
Q 039362 4 FSALSYLGNIDYSCKVLSHLS----------NPRIFYWNTVIRGYS---------------KSKNPNKSISLFVKMLRAG 58 (440)
Q Consensus 4 ~y~~~~~g~~~~A~~~~~~~~----------~~~~~~~~~l~~~~~---------------~~~~~~~a~~~~~~~~~~~ 58 (440)
.|...+.|.+.+|.+.|..+. +.+..--..++..+. ..++.+.+.++-.-.-...
T Consensus 998 gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~ 1077 (1202)
T KOG0292|consen 998 GYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCK 1077 (1202)
T ss_pred HHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCC
Confidence 455556799999999998764 122222333333321 1233444444444444444
Q ss_pred CCCCc--chHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHH
Q 039362 59 VSPDH--LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFIS 101 (440)
Q Consensus 59 ~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 101 (440)
++|-. -+....+..+.+.+++..|..+-.++++.++.|...--
T Consensus 1078 Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1078 LQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred CCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 55543 34566777788889999998888888888877665433
No 480
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=45.21 E-value=1.5e+02 Score=24.80 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=21.6
Q ss_pred HHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 039362 247 KEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQ 290 (440)
Q Consensus 247 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 290 (440)
++|..+++.-.....++.+...+.-++...|+...+..+++.+.
T Consensus 116 ~kA~~~L~~~~~~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~ 159 (246)
T PF07678_consen 116 NKALNYLERHLDNIQDPYTLALVAYALALAGDSPQASKLLNKLN 159 (246)
T ss_dssp HHHHHHHHHHHGCTSSHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 34455554443223344444444444455556666666666654
No 481
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=45.13 E-value=57 Score=22.19 Aligned_cols=27 Identities=4% Similarity=0.202 Sum_probs=12.2
Q ss_pred CHHHHHHHhhCCCCCchhhHHHHHHHH
Q 039362 113 DIVYAREVFDGMPTKMSVSWNSMLDGY 139 (440)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~l~~~~ 139 (440)
..+++.++++.++.+++.+|..+..++
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL 75 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEAL 75 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 344444444444444444444444444
No 482
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=44.88 E-value=47 Score=17.39 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHcCCCCCcchHH
Q 039362 44 PNKSISLFVKMLRAGVSPDHLTYP 67 (440)
Q Consensus 44 ~~~a~~~~~~~~~~~~~~~~~~~~ 67 (440)
++.|..+|++... +.|++.+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 4555555555554 235554443
No 483
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.43 E-value=2.1e+02 Score=24.35 Aligned_cols=137 Identities=8% Similarity=0.048 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc--CCHHHHHHHHhcC--CCCccHhHHHHHHHH
Q 039362 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA--GQVTEAYEFICQM--PLEPTASMLGSLLTG 374 (440)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~--~~~p~~~~~~~l~~~ 374 (440)
.++..+=..+.+......|.++....+. ..|-..|.-..-+.+.+. .+..+-++.+.+. ....+-.+|..--..
T Consensus 44 ~~m~YfRAI~~~~E~S~RAl~LT~d~i~--lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~i 121 (318)
T KOG0530|consen 44 DVMDYFRAIIAKNEKSPRALQLTEDAIR--LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVI 121 (318)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHH--hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHH
Q ss_pred HHhcCChh-HHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCCccCCCCC
Q 039362 375 CMNHGKLD-LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPGWS 437 (440)
Q Consensus 375 ~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 437 (440)
.-..|++. .-+++.+.|+..+..+-.+|..--+++..-+.++.-+.+-.++++..+...++|.
T Consensus 122 ve~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 122 VELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWN 185 (318)
T ss_pred HHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhh
No 484
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.31 E-value=3.7e+02 Score=27.31 Aligned_cols=266 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred ccccccCChhhHHHHhhhcCCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHH
Q 039362 5 SALSYLGNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVA 84 (440)
Q Consensus 5 y~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 84 (440)
|... |+++.|++.-..-|..-..++..-...+.+.+++..|.++|.++ ...|..+.--+....+.+ +++
T Consensus 368 yLd~--g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t--------~~~FEEVaLKFl~~~~~~-~L~ 436 (911)
T KOG2034|consen 368 YLDK--GEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET--------LSSFEEVALKFLEINQER-ALR 436 (911)
T ss_pred HHhc--chHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhhHHHHHHHHHhcCCHH-HHH
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHH-------------------------
Q 039362 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGY------------------------- 139 (440)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~------------------------- 139 (440)
.|-.=+-..++|...+-..++..+. .+--+.-+..+..+|.......-.-+
T Consensus 437 ~~L~KKL~~lt~~dk~q~~~Lv~WL----lel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~ 512 (911)
T KOG2034|consen 437 TFLDKKLDRLTPEDKTQRDALVTWL----LELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQ 512 (911)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHH----HHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHH
Q ss_pred --HhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHH-------------------------HHHHHHhcCCC
Q 039362 140 --AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALV-------------------------IFEEMRDVGSK 192 (440)
Q Consensus 140 --~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-------------------------~~~~~~~~~~~ 192 (440)
...|+.+....+-.-+.+ |..++..+.+.+.+++|++ +.......+-.
T Consensus 513 l~~~~~~~e~ll~fA~l~~d-----~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~wm~~~d~ 587 (911)
T KOG2034|consen 513 LLASHGRQEELLQFANLIKD-----YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSAWMAQKDL 587 (911)
T ss_pred HHHHccCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHHHHcccc
Q ss_pred CCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHH
Q 039362 193 ANEVTLVSVLCACAHL---GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269 (440)
Q Consensus 193 ~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 269 (440)
.+......++..+.+. .....+...++.....-...++..++.++..|++..+-+.-..+-...........-....
T Consensus 588 ~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~~~YDl~~a 667 (911)
T KOG2034|consen 588 DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSRVHYDLDYA 667 (911)
T ss_pred CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhccccceecHHHH
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 039362 270 IGGLAMHGFVKESLELFTEMQ 290 (440)
Q Consensus 270 ~~~~~~~~~~~~a~~~~~~m~ 290 (440)
+..|.+.+....++.++..|.
T Consensus 668 lRlc~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 668 LRLCLKFKKTRACVFLLCMLN 688 (911)
T ss_pred HHHHHHhCccceeeeHHHHHH
No 485
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.13 E-value=2.2e+02 Score=24.51 Aligned_cols=93 Identities=17% Similarity=0.114 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhhhhc------CCchhhHHHH-HHHHHhcCChHHHHHHHHHHHHc----CCCccHhhHH
Q 039362 234 TSLIDMYAKCGAIKEALIVFHGVEKH------QSDVLIWNAM-IGGLAMHGFVKESLELFTEMQIV----GITPDEITFL 302 (440)
Q Consensus 234 ~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~ 302 (440)
..++..+.+.|.+.+|+.+...+... +|+..+...+ -..|....+..++..-+...+.. -++|....-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 34667777777777777766554321 3332222111 12344444444444444333221 1344333333
Q ss_pred HHHHHH--HcCCChHHHHHHHHHHhh
Q 039362 303 GLLSAC--AHGGLVMEAWYFFKSLGK 326 (440)
Q Consensus 303 ~l~~~~--~~~~~~~~a~~~~~~~~~ 326 (440)
.|+++- |...++..|..+|-+..+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 333332 234456666666665555
No 486
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=43.11 E-value=3e+02 Score=26.19 Aligned_cols=60 Identities=10% Similarity=0.014 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcc--HhhHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 039362 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPD--EITFLGLLSACAHGGLVMEAWYFFKSLGKR 327 (440)
Q Consensus 267 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 327 (440)
..++.-|.+.+++++|..++..|.=.- .+. -...+.+...+.+..--.+.+..++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~-~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNT-MGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccc-cHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 345666777777777777776653211 111 122333444444444344444444444443
No 487
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.92 E-value=2.1e+02 Score=27.74 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=59.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCc------hhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCC
Q 039362 206 AHLGALDQGRMMLRYMIDKGLSLT------LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGF 278 (440)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 278 (440)
.+..++..+.+.|..-...- +.| ......+.-+|....+.|.|.+++.++.+.+|. +.+--.+..+....|.
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i-~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDI-ISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 34567777777777655432 222 345677888899999999999999999987764 4455556677778888
Q ss_pred hHHHHHHHHHHH
Q 039362 279 VKESLELFTEMQ 290 (440)
Q Consensus 279 ~~~a~~~~~~m~ 290 (440)
.++|+.......
T Consensus 444 Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 444 SEEALTCLQKIK 455 (872)
T ss_pred hHHHHHHHHHHH
Confidence 888888776654
No 488
>PRK09462 fur ferric uptake regulator; Provisional
Probab=42.86 E-value=1.1e+02 Score=23.12 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=37.8
Q ss_pred HHHHcCCCCCcchHHHHHHHhhch-hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 039362 53 KMLRAGVSPDHLTYPFLAKASGRL-AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114 (440)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 114 (440)
.+.+.|+.++.. -..++..+... +..-.|.++++.+.+.++..+..|....+..+...|-+
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345556655443 23444444443 45667888888888887776766665666677776643
No 489
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=42.63 E-value=86 Score=19.76 Aligned_cols=48 Identities=10% Similarity=-0.073 Sum_probs=23.3
Q ss_pred CCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 039362 61 PDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYG 109 (440)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (440)
|....++.++...+.-.-.+.++..+.++.+.|. .+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3444455555555555555555555555555553 24444444444333
No 490
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=42.56 E-value=77 Score=27.41 Aligned_cols=70 Identities=3% Similarity=-0.116 Sum_probs=54.9
Q ss_pred CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHH-HHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 361 LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVG-LSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 361 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
...|+..|...+.-..+.|-+.+...++.+.++.+|.+...|.. ...-+...++.+.++.+|.+-++.+.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 34466777766665567788899999999999999999988765 44556778999999999977766653
No 491
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=41.79 E-value=1.9e+02 Score=23.61 Aligned_cols=31 Identities=13% Similarity=-0.023 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 039362 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397 (440)
Q Consensus 367 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 397 (440)
+...++....+.|+.++|.+.|.+++.....
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 3344556677899999999999999887633
No 492
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=41.57 E-value=4.4e+02 Score=28.18 Aligned_cols=155 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHhcCChHHHHH------HHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc---------CCchhhHH
Q 039362 203 CACAHLGALDQGRM------MLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH---------QSDVLIWN 267 (440)
Q Consensus 203 ~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~ 267 (440)
......|.+.++.+ ++......-.+.....|..+...+.+.|+.++|+..-.+..-. ..+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc-------CCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc-----CCCC--Cc
Q 039362 268 AMIGGLAMHGFVKESLELFTEMQIV-------GITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-----GMVP--KS 333 (440)
Q Consensus 268 ~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~--~~ 333 (440)
.+.......++...|...+.+.... ..+|...+++.+-..+...++.+.|.++++.+... |.++ +.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHh
Q 039362 334 EHYACMVDALSRAGQVTEAYEFIC 357 (440)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~ 357 (440)
.++..+.+.+...+++..|....+
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHh
No 493
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=40.95 E-value=83 Score=22.24 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=11.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 039362 166 LIDGYVKCGDYKEALVIFEEM 186 (440)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~ 186 (440)
++..|...++.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444555556666666655554
No 494
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=40.63 E-value=92 Score=20.98 Aligned_cols=29 Identities=14% Similarity=0.045 Sum_probs=12.9
Q ss_pred CCHHHHHHHhhCCCCCchhhHHHHHHHHH
Q 039362 112 GDIVYAREVFDGMPTKMSVSWNSMLDGYA 140 (440)
Q Consensus 112 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 140 (440)
...++|..+++.+..++..+|..+.+++.
T Consensus 42 t~~~qa~~Lld~L~trG~~Af~~F~~aL~ 70 (86)
T cd08323 42 TQKEKAVMLINMILTKDNHAYVSFYNALL 70 (86)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 495
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.18 E-value=4.8e+02 Score=27.70 Aligned_cols=83 Identities=8% Similarity=-0.038 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C-chhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHH
Q 039362 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLS--L-TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLA 274 (440)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (440)
|..+++.+-..+..+.+.++-..+.+.-.+ | -..+++.+.+.....|.+-+|...+-..............++..++
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 556666666777777777666555443211 1 1234455566666667776666555443321112234445555555
Q ss_pred hcCChH
Q 039362 275 MHGFVK 280 (440)
Q Consensus 275 ~~~~~~ 280 (440)
..|.++
T Consensus 1066 ecg~l~ 1071 (1480)
T KOG4521|consen 1066 ECGELE 1071 (1480)
T ss_pred hccchH
Confidence 555543
No 496
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.11 E-value=3.3e+02 Score=25.72 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=11.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCH
Q 039362 173 CGDYKEALVIFEEMRDVGSKANE 195 (440)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~ 195 (440)
.++++.|+.++.+|...|..|..
T Consensus 256 ~~d~~~Al~~l~~ll~~Gedp~~ 278 (472)
T PRK14962 256 NGDVKRVFTVLDDVYYSGKDYEV 278 (472)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHH
Confidence 34555555555555554444433
No 497
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=39.83 E-value=2.7e+02 Score=24.68 Aligned_cols=136 Identities=18% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHcCCChHHHHHHHHHHhhc--CCCCCcch-------HHHHHHHHHhcCCHHHHHHHHhcC-------CCCccHhHH
Q 039362 305 LSACAHGGLVMEAWYFFKSLGKR--GMVPKSEH-------YACMVDALSRAGQVTEAYEFICQM-------PLEPTASML 368 (440)
Q Consensus 305 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~-------~~~p~~~~~ 368 (440)
++.....++.+++..++..+... |...+... ...+.+.|.+.|+.++-..+.... +-.......
T Consensus 11 ~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlv 90 (411)
T KOG1463|consen 11 AQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLV 90 (411)
T ss_pred HHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHHHHHHh-cCChhHHHHHHHHHHhcCCCCCchHH------HHHHHHHhccChHHHHHHHHHHHhcCCccCCCCCCCC
Q 039362 369 GSLLTGCMN-HGKLDLAEIVGKKLVELQPDHDGRYV------GLSNVYAIFKRWDEARTTREAMETRGVKKYPGWSFVE 440 (440)
Q Consensus 369 ~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 440 (440)
..++..+.. .+..+.-+.+....++.......++. .++..|...+++.+|+.+...+.+.--..+.....||
T Consensus 91 R~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLve 169 (411)
T KOG1463|consen 91 RSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVE 169 (411)
T ss_pred HHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceee
No 498
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=39.65 E-value=2.8e+02 Score=26.44 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCcc-H---hHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039362 336 YACMVDALSRAGQVTEAYEFICQMPLEPT-A---SMLGSLLTGCMNHGKLDLAEIVGKKLVEL 394 (440)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 394 (440)
...++.-|.+.+++++|..++..|..... . ...+.+...+.+..-.++.+..++.++..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 34677789999999999999999843321 1 23344455555655456666667776664
No 499
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.85 E-value=2.6e+02 Score=24.14 Aligned_cols=29 Identities=3% Similarity=-0.050 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 039362 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKR 327 (440)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 327 (440)
..+..+...|++.++.+.+.+..++..+.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~ 144 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRD 144 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 45556666777777777776666655443
No 500
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.69 E-value=2.5e+02 Score=24.06 Aligned_cols=81 Identities=19% Similarity=0.171 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----c
Q 039362 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG-------ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK----C 243 (440)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 243 (440)
+..+|..+|.+....|..+...+...+...+..-. +...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 56667777777666664432222222333332210 2224555555555554 22233333333322 2
Q ss_pred CCHHHHHHHHhhhhh
Q 039362 244 GAIKEALIVFHGVEK 258 (440)
Q Consensus 244 g~~~~A~~~~~~~~~ 258 (440)
.+..+|...|....+
T Consensus 205 ~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 205 RDLKKAFRWYKKAAE 219 (292)
T ss_pred cCHHHHHHHHHHHHH
Confidence 255556666655554
Done!