Query 039362
Match_columns 440
No_of_seqs 684 out of 1741
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 15:07:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.8E-41 1.6E-45 319.8 42.7 412 11-430 67-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.8E-40 1.6E-44 313.0 32.8 402 3-410 125-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-31 5.3E-36 240.4 40.4 374 35-414 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-30 6.2E-35 233.4 37.9 356 69-429 5-369 (388)
5 4g26_A Pentatricopeptide repea 100.0 2E-30 6.8E-35 236.7 26.0 185 161-345 27-222 (501)
6 2gw1_A Mitochondrial precursor 100.0 7.1E-28 2.4E-32 224.9 31.8 267 160-430 186-480 (514)
7 4g26_A Pentatricopeptide repea 100.0 4.9E-29 1.7E-33 227.6 22.0 201 177-377 7-222 (501)
8 3fp2_A TPR repeat-containing p 100.0 9.1E-27 3.1E-31 218.6 33.8 395 28-430 25-493 (537)
9 2gw1_A Mitochondrial precursor 100.0 6.7E-27 2.3E-31 218.2 32.4 393 5-405 16-489 (514)
10 2y4t_A DNAJ homolog subfamily 100.0 2.2E-25 7.4E-30 204.4 37.5 378 14-417 9-443 (450)
11 2y4t_A DNAJ homolog subfamily 100.0 9.7E-26 3.3E-30 206.8 31.7 333 63-429 26-411 (450)
12 3fp2_A TPR repeat-containing p 99.9 2.7E-24 9.3E-29 201.7 36.2 387 5-403 35-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.7E-22 5.8E-27 179.3 32.0 309 97-410 2-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2.1E-22 7.2E-27 178.6 32.2 319 27-376 2-351 (359)
15 3hym_B Cell division cycle pro 99.9 3.1E-21 1.1E-25 169.1 29.1 285 128-415 21-321 (330)
16 1fch_A Peroxisomal targeting s 99.9 5.5E-22 1.9E-26 176.7 24.1 283 141-426 37-357 (368)
17 3hym_B Cell division cycle pro 99.9 4.4E-21 1.5E-25 168.1 29.1 268 158-429 20-300 (330)
18 2xm6_A Protein corresponding t 99.9 1.5E-19 5.1E-24 167.1 38.4 376 17-411 27-452 (490)
19 2ooe_A Cleavage stimulation fa 99.9 1.6E-19 5.4E-24 168.7 37.8 398 25-430 10-494 (530)
20 4g1t_A Interferon-induced prot 99.9 8.9E-21 3E-25 174.8 28.5 284 144-439 153-470 (472)
21 2xm6_A Protein corresponding t 99.9 5.6E-19 1.9E-23 163.3 39.0 365 45-430 24-434 (490)
22 4eqf_A PEX5-related protein; a 99.9 2.8E-21 9.7E-26 171.9 22.3 263 159-424 64-352 (365)
23 1b89_A Protein (clathrin heavy 99.9 3.3E-20 1.1E-24 161.7 25.1 373 11-422 17-411 (449)
24 1fch_A Peroxisomal targeting s 99.9 2E-20 6.8E-25 166.6 22.5 279 110-393 37-358 (368)
25 3cv0_A Peroxisome targeting si 99.9 3.1E-20 1.1E-24 162.5 22.5 265 159-427 20-314 (327)
26 4eqf_A PEX5-related protein; a 99.9 4.7E-20 1.6E-24 164.0 20.9 259 128-390 64-352 (365)
27 4g1t_A Interferon-induced prot 99.9 8.3E-19 2.8E-23 161.6 29.7 367 27-406 50-471 (472)
28 2ooe_A Cleavage stimulation fa 99.8 8.9E-18 3E-22 156.9 35.5 383 10-397 25-495 (530)
29 1b89_A Protein (clathrin heavy 99.8 4.9E-20 1.7E-24 160.7 18.6 350 40-430 15-387 (449)
30 1xi4_A Clathrin heavy chain; a 99.8 1.7E-17 5.8E-22 161.3 37.3 363 11-420 999-1376(1630)
31 3mkr_A Coatomer subunit epsilo 99.8 4.6E-18 1.6E-22 145.2 29.8 270 138-422 8-288 (291)
32 1xi4_A Clathrin heavy chain; a 99.8 1.3E-16 4.5E-21 155.2 38.3 349 32-424 989-1341(1630)
33 3cv0_A Peroxisome targeting si 99.8 2.4E-18 8E-23 150.5 24.4 153 205-359 148-312 (327)
34 3mkr_A Coatomer subunit epsilo 99.8 1.1E-17 3.9E-22 142.8 27.3 224 135-366 40-269 (291)
35 2pl2_A Hypothetical conserved 99.8 1.1E-17 3.8E-22 136.6 19.0 198 227-426 2-212 (217)
36 3uq3_A Heat shock protein STI1 99.8 2.3E-17 7.9E-22 138.9 21.4 225 161-428 6-236 (258)
37 3uq3_A Heat shock protein STI1 99.8 3.7E-17 1.3E-21 137.6 21.5 189 233-430 8-204 (258)
38 1xnf_A Lipoprotein NLPI; TPR, 99.8 9.2E-17 3.2E-21 136.6 23.4 243 172-422 17-269 (275)
39 3u4t_A TPR repeat-containing p 99.8 6.6E-17 2.3E-21 137.3 22.2 248 163-413 6-269 (272)
40 3e4b_A ALGK; tetratricopeptide 99.8 3.7E-17 1.3E-21 148.8 19.8 377 34-428 9-421 (452)
41 3e4b_A ALGK; tetratricopeptide 99.7 3.8E-16 1.3E-20 142.2 24.1 346 68-430 8-389 (452)
42 2h6f_A Protein farnesyltransfe 99.7 3.7E-16 1.2E-20 137.9 21.9 249 160-412 97-366 (382)
43 2pl2_A Hypothetical conserved 99.7 6.3E-16 2.1E-20 126.2 21.0 196 159-359 4-211 (217)
44 3u4t_A TPR repeat-containing p 99.7 8.5E-16 2.9E-20 130.4 21.9 232 196-430 4-252 (272)
45 2h6f_A Protein farnesyltransfe 99.7 8.5E-16 2.9E-20 135.6 21.3 231 195-429 97-349 (382)
46 1xnf_A Lipoprotein NLPI; TPR, 99.7 4E-16 1.4E-20 132.6 18.6 242 141-388 17-269 (275)
47 1ouv_A Conserved hypothetical 99.7 7.3E-15 2.5E-19 124.7 26.2 226 159-398 5-255 (273)
48 3spa_A Mtrpol, DNA-directed RN 99.7 1.2E-17 4.1E-22 157.5 9.1 124 229-352 126-255 (1134)
49 2q7f_A YRRB protein; TPR, prot 99.7 3.9E-16 1.3E-20 130.1 17.4 209 197-408 25-236 (243)
50 1ouv_A Conserved hypothetical 99.7 1.4E-14 4.8E-19 123.0 27.1 225 194-430 5-253 (273)
51 2ho1_A Type 4 fimbrial biogene 99.7 1.9E-15 6.4E-20 126.7 21.4 202 196-399 38-243 (252)
52 3spa_A Mtrpol, DNA-directed RN 99.7 5.5E-17 1.9E-21 153.1 12.9 118 160-310 127-248 (1134)
53 4a1s_A PINS, partner of inscut 99.7 5.6E-16 1.9E-20 140.0 18.9 264 164-428 52-372 (411)
54 2ho1_A Type 4 fimbrial biogene 99.7 4.9E-15 1.7E-19 124.2 23.2 199 230-429 37-239 (252)
55 2vq2_A PILW, putative fimbrial 99.7 4.9E-15 1.7E-19 121.8 22.1 198 196-427 9-210 (225)
56 2q7f_A YRRB protein; TPR, prot 99.7 8.3E-16 2.8E-20 128.1 17.2 201 228-430 21-224 (243)
57 3ro2_A PINS homolog, G-protein 99.7 1E-15 3.4E-20 134.1 17.9 266 163-429 8-333 (338)
58 3sf4_A G-protein-signaling mod 99.7 1.4E-15 4.8E-20 137.0 19.1 291 130-420 10-368 (406)
59 2vq2_A PILW, putative fimbrial 99.7 1.3E-14 4.4E-19 119.2 22.8 198 159-359 7-208 (225)
60 4e6h_A MRNA 3'-END-processing 99.7 7.6E-13 2.6E-17 124.5 33.6 405 25-431 63-573 (679)
61 4abn_A Tetratricopeptide repea 99.6 2.7E-15 9.1E-20 137.5 16.1 210 211-424 84-317 (474)
62 3sf4_A G-protein-signaling mod 99.6 4.1E-15 1.4E-19 134.0 16.3 273 27-325 8-334 (406)
63 3ulq_A Response regulator aspa 99.6 1.3E-14 4.4E-19 129.7 19.1 195 232-427 145-367 (383)
64 3ulq_A Response regulator aspa 99.6 4.4E-14 1.5E-18 126.2 21.9 231 165-395 108-369 (383)
65 3vtx_A MAMA; tetratricopeptide 99.6 3.9E-14 1.3E-18 112.4 18.7 163 265-429 7-171 (184)
66 2ond_A Cleavage stimulation fa 99.6 5.3E-13 1.8E-17 115.2 26.2 221 177-400 33-276 (308)
67 4a1s_A PINS, partner of inscut 99.6 3.6E-14 1.2E-18 128.1 19.1 93 197-289 225-329 (411)
68 3ro2_A PINS homolog, G-protein 99.6 1.6E-14 5.6E-19 126.3 16.0 272 30-327 7-332 (338)
69 4e6h_A MRNA 3'-END-processing 99.6 4.1E-12 1.4E-16 119.6 32.3 386 11-399 80-575 (679)
70 2ond_A Cleavage stimulation fa 99.6 7E-13 2.4E-17 114.5 24.5 215 212-430 33-272 (308)
71 3nf1_A KLC 1, kinesin light ch 99.6 1.1E-14 3.7E-19 126.1 12.7 243 160-427 27-306 (311)
72 3nf1_A KLC 1, kinesin light ch 99.6 1.6E-14 5.5E-19 125.0 12.5 241 129-397 27-310 (311)
73 3vtx_A MAMA; tetratricopeptide 99.6 1E-12 3.6E-17 104.1 21.9 165 159-326 4-169 (184)
74 1hz4_A MALT regulatory protein 99.5 1.2E-11 4.2E-16 109.9 29.4 262 136-397 21-325 (373)
75 4abn_A Tetratricopeptide repea 99.5 2.7E-13 9.1E-18 124.2 18.6 195 160-359 102-318 (474)
76 3q15_A PSP28, response regulat 99.5 5.9E-12 2E-16 112.1 25.9 230 164-393 105-364 (378)
77 3q15_A PSP28, response regulat 99.5 7.7E-13 2.6E-17 117.9 19.6 228 200-428 106-365 (378)
78 4i17_A Hypothetical protein; T 99.5 2E-12 6.9E-17 106.4 19.8 207 193-409 5-224 (228)
79 4gyw_A UDP-N-acetylglucosamine 99.5 4E-13 1.4E-17 128.0 17.0 163 263-427 9-173 (723)
80 3as5_A MAMA; tetratricopeptide 99.5 3.9E-13 1.3E-17 106.6 14.3 165 231-429 9-174 (186)
81 1hz4_A MALT regulatory protein 99.5 8.5E-12 2.9E-16 110.9 23.3 290 102-397 18-352 (373)
82 3as5_A MAMA; tetratricopeptide 99.5 3.8E-12 1.3E-16 100.8 17.8 170 195-399 8-178 (186)
83 4i17_A Hypothetical protein; T 99.4 3.6E-12 1.2E-16 104.9 16.2 194 227-430 4-211 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.4 1.3E-11 4.5E-16 117.6 20.9 164 160-326 9-173 (723)
85 3edt_B KLC 2, kinesin light ch 99.4 1.9E-11 6.6E-16 103.9 19.5 198 196-393 44-280 (283)
86 1qqe_A Vesicular transport pro 99.4 1.1E-11 3.8E-16 106.0 17.5 195 204-398 46-273 (292)
87 3mv2_B Coatomer subunit epsilo 99.4 1.7E-10 5.7E-15 96.7 22.9 181 214-401 85-289 (310)
88 3edt_B KLC 2, kinesin light ch 99.4 3.5E-12 1.2E-16 108.5 11.7 223 206-428 12-281 (283)
89 3qky_A Outer membrane assembly 99.4 2.4E-11 8.3E-16 102.1 16.1 205 194-419 14-252 (261)
90 3mv2_B Coatomer subunit epsilo 99.4 1.5E-10 5.3E-15 96.9 20.5 241 168-429 21-283 (310)
91 1qqe_A Vesicular transport pro 99.3 2E-10 6.7E-15 98.2 20.7 209 145-366 33-274 (292)
92 2yhc_A BAMD, UPF0169 lipoprote 99.3 5.9E-10 2E-14 91.2 20.5 203 196-432 5-217 (225)
93 3urz_A Uncharacterized protein 99.3 2.1E-10 7.1E-15 92.6 17.2 128 269-398 60-190 (208)
94 2pzi_A Probable serine/threoni 99.3 4.9E-10 1.7E-14 107.3 21.0 171 206-380 402-583 (681)
95 3qky_A Outer membrane assembly 99.3 2.4E-10 8.3E-15 96.0 16.4 186 227-429 12-225 (261)
96 4ga2_A E3 SUMO-protein ligase 99.3 8.8E-12 3E-16 94.8 6.7 140 273-414 7-149 (150)
97 2pzi_A Probable serine/threoni 99.2 4.4E-11 1.5E-15 114.5 13.0 171 241-414 402-583 (681)
98 3urz_A Uncharacterized protein 99.2 4.3E-10 1.5E-14 90.8 16.6 184 162-369 6-194 (208)
99 2fo7_A Synthetic consensus TPR 99.2 1.9E-10 6.6E-15 85.5 13.5 127 302-429 5-133 (136)
100 2fo7_A Synthetic consensus TPR 99.2 1.8E-09 6.3E-14 80.1 17.5 128 162-291 3-131 (136)
101 3dra_A Protein farnesyltransfe 99.2 7.1E-09 2.4E-13 87.8 22.8 231 172-406 45-300 (306)
102 3rjv_A Putative SEL1 repeat pr 99.2 1.5E-09 5.2E-14 87.7 18.1 161 262-430 17-199 (212)
103 3dra_A Protein farnesyltransfe 99.2 3.2E-08 1.1E-12 83.8 26.7 215 210-427 48-286 (306)
104 2ifu_A Gamma-SNAP; membrane fu 99.2 2.1E-10 7.1E-15 98.8 13.5 180 238-420 44-253 (307)
105 2uy1_A Cleavage stimulation fa 99.2 4.5E-09 1.5E-13 96.2 22.5 372 11-427 8-412 (493)
106 3qou_A Protein YBBN; thioredox 99.2 6.9E-10 2.4E-14 94.4 16.0 163 262-427 116-283 (287)
107 2r5s_A Uncharacterized protein 99.2 1.8E-10 6.2E-15 90.3 11.1 159 233-427 9-172 (176)
108 2uy1_A Cleavage stimulation fa 99.2 9.1E-08 3.1E-12 87.5 29.3 354 10-393 27-412 (493)
109 4ga2_A E3 SUMO-protein ligase 99.2 4E-10 1.4E-14 85.5 11.7 82 200-282 36-118 (150)
110 3qou_A Protein YBBN; thioredox 99.2 2.7E-09 9.2E-14 90.7 18.0 164 192-357 114-279 (287)
111 2vsy_A XCC0866; transferase, g 99.1 6.6E-10 2.2E-14 104.6 14.5 162 243-406 2-169 (568)
112 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.2E-08 3.9E-13 83.5 20.1 21 242-262 108-128 (225)
113 2r5s_A Uncharacterized protein 99.1 3.1E-09 1E-13 83.2 15.9 154 134-290 11-171 (176)
114 2vsy_A XCC0866; transferase, g 99.1 1.2E-09 4.1E-14 102.8 15.6 149 208-359 2-154 (568)
115 2ifu_A Gamma-SNAP; membrane fu 99.1 3.9E-10 1.3E-14 97.1 10.2 195 208-426 4-222 (307)
116 2c2l_A CHIP, carboxy terminus 99.1 7.1E-10 2.4E-14 94.0 11.1 95 196-291 5-100 (281)
117 3gyz_A Chaperone protein IPGC; 99.1 6.6E-10 2.3E-14 83.9 9.0 97 333-429 36-134 (151)
118 3rjv_A Putative SEL1 repeat pr 99.1 1.6E-08 5.5E-13 81.7 17.8 172 148-328 5-198 (212)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1.8E-08 6E-13 81.6 18.0 90 134-224 11-100 (213)
120 1hh8_A P67PHOX, NCF-2, neutrop 99.0 6.5E-09 2.2E-13 84.1 14.1 131 264-399 7-155 (213)
121 3u3w_A Transcriptional activat 99.0 3.2E-08 1.1E-12 84.5 18.5 160 268-427 80-265 (293)
122 2qfc_A PLCR protein; TPR, HTH, 99.0 5.9E-08 2E-12 82.8 18.8 163 265-427 77-265 (293)
123 4f3v_A ESX-1 secretion system 99.0 1.4E-08 5E-13 83.9 13.8 122 306-429 110-238 (282)
124 4gco_A Protein STI-1; structur 99.0 6.1E-09 2.1E-13 76.2 10.4 107 300-407 15-123 (126)
125 1a17_A Serine/threonine protei 98.9 1.4E-08 4.9E-13 78.4 12.8 127 300-427 15-145 (166)
126 2vgx_A Chaperone SYCD; alterna 98.9 1.9E-09 6.5E-14 81.5 7.5 101 299-400 22-124 (148)
127 3q7a_A Farnesyltransferase alp 98.9 1.1E-06 3.8E-11 75.2 25.1 230 170-403 64-341 (349)
128 2c2l_A CHIP, carboxy terminus 98.9 4.2E-08 1.4E-12 83.1 16.1 100 160-261 4-103 (281)
129 4f3v_A ESX-1 secretion system 98.9 3.2E-08 1.1E-12 81.8 14.1 195 207-406 18-248 (282)
130 3u3w_A Transcriptional activat 98.9 3.7E-07 1.3E-11 77.8 21.3 126 201-326 121-265 (293)
131 4gco_A Protein STI-1; structur 98.9 7.5E-08 2.6E-12 70.3 14.3 98 162-261 15-112 (126)
132 2lni_A Stress-induced-phosphop 98.9 2.6E-08 8.8E-13 73.6 11.6 116 298-414 16-133 (133)
133 2vyi_A SGTA protein; chaperone 98.9 1.9E-08 6.7E-13 73.9 10.7 117 298-415 12-130 (131)
134 1p5q_A FKBP52, FK506-binding p 98.9 2E-08 6.7E-13 87.5 12.1 94 334-427 197-293 (336)
135 3q7a_A Farnesyltransferase alp 98.9 4.2E-07 1.5E-11 77.8 19.9 219 207-428 66-331 (349)
136 1na0_A Designed protein CTPR3; 98.9 3.5E-08 1.2E-12 71.9 11.8 114 299-413 10-125 (125)
137 1a17_A Serine/threonine protei 98.9 1.5E-07 5.2E-12 72.5 15.9 127 161-289 14-143 (166)
138 2e2e_A Formate-dependent nitri 98.8 1.3E-08 4.3E-13 79.8 9.4 127 273-401 20-151 (177)
139 3gyz_A Chaperone protein IPGC; 98.8 8E-08 2.7E-12 72.4 13.1 102 160-263 36-137 (151)
140 2kck_A TPR repeat; tetratricop 98.8 2.8E-08 9.6E-13 70.8 9.9 100 332-431 5-109 (112)
141 2qfc_A PLCR protein; TPR, HTH, 98.8 7.1E-07 2.4E-11 76.1 20.3 164 162-325 77-264 (293)
142 2xcb_A PCRH, regulatory protei 98.8 2.6E-08 9E-13 74.7 10.0 101 300-401 20-122 (142)
143 3gw4_A Uncharacterized protein 98.8 9.3E-08 3.2E-12 76.5 13.8 148 142-289 5-173 (203)
144 1na0_A Designed protein CTPR3; 98.8 2.7E-07 9.3E-12 67.0 14.9 99 161-261 10-108 (125)
145 1hxi_A PEX5, peroxisome target 98.8 2.3E-08 7.8E-13 72.6 8.6 97 334-430 18-116 (121)
146 2vyi_A SGTA protein; chaperone 98.8 2.7E-07 9.1E-12 67.7 14.4 117 160-278 12-129 (131)
147 2vgx_A Chaperone SYCD; alterna 98.8 7.3E-08 2.5E-12 72.7 11.4 94 232-326 23-117 (148)
148 2lni_A Stress-induced-phosphop 98.8 2.6E-07 9E-12 68.0 14.3 100 160-261 16-115 (133)
149 3upv_A Heat shock protein STI1 98.8 3.6E-08 1.2E-12 72.2 9.4 92 337-428 8-101 (126)
150 3dss_A Geranylgeranyl transfer 98.8 3.1E-06 1.1E-10 72.1 22.3 193 211-407 90-317 (331)
151 2e2e_A Formate-dependent nitri 98.8 1.2E-07 4.1E-12 74.1 12.6 116 209-326 24-143 (177)
152 2fbn_A 70 kDa peptidylprolyl i 98.8 6.4E-09 2.2E-13 83.1 5.2 173 237-429 11-187 (198)
153 4gcn_A Protein STI-1; structur 98.7 2.9E-08 1E-12 72.7 8.0 91 337-427 12-111 (127)
154 3dss_A Geranylgeranyl transfer 98.7 5.5E-06 1.9E-10 70.6 22.8 214 213-429 48-305 (331)
155 1p5q_A FKBP52, FK506-binding p 98.7 3.3E-07 1.1E-11 79.7 15.5 146 144-290 128-292 (336)
156 3gw4_A Uncharacterized protein 98.7 5.3E-07 1.8E-11 72.1 15.5 159 75-258 4-175 (203)
157 3q49_B STIP1 homology and U bo 98.7 1E-07 3.5E-12 70.8 10.2 100 297-397 8-109 (137)
158 2xcb_A PCRH, regulatory protei 98.7 4.1E-07 1.4E-11 68.1 13.3 99 161-261 19-117 (142)
159 3sz7_A HSC70 cochaperone (SGT) 98.7 6.5E-08 2.2E-12 74.6 9.1 110 296-406 9-120 (164)
160 4b4t_Q 26S proteasome regulato 98.7 4.8E-07 1.6E-11 81.9 16.1 162 266-427 58-244 (434)
161 2dba_A Smooth muscle cell asso 98.7 1.6E-07 5.4E-12 70.8 10.9 108 298-407 28-141 (148)
162 2fbn_A 70 kDa peptidylprolyl i 98.7 7.3E-08 2.5E-12 76.9 9.4 120 160-280 38-173 (198)
163 1elw_A TPR1-domain of HOP; HOP 98.7 2.8E-07 9.6E-12 66.2 11.7 108 300-408 6-115 (118)
164 3upv_A Heat shock protein STI1 98.7 8.6E-07 3E-11 64.7 14.3 96 162-259 6-101 (126)
165 4gcn_A Protein STI-1; structur 98.7 6.6E-07 2.3E-11 65.4 13.3 24 268-291 88-111 (127)
166 2xev_A YBGF; tetratricopeptide 98.7 1.2E-07 4.1E-12 69.6 8.9 98 302-401 6-112 (129)
167 3sz7_A HSC70 cochaperone (SGT) 98.6 3.3E-07 1.1E-11 70.6 11.6 96 262-359 10-105 (164)
168 1elw_A TPR1-domain of HOP; HOP 98.6 2.5E-06 8.4E-11 61.1 15.2 99 161-261 5-103 (118)
169 2hr2_A Hypothetical protein; a 98.6 1.2E-07 4E-12 70.8 7.9 106 301-428 14-131 (159)
170 2dba_A Smooth muscle cell asso 98.6 6E-07 2.1E-11 67.5 11.8 98 332-429 27-129 (148)
171 2kck_A TPR repeat; tetratricop 98.6 9.2E-07 3.1E-11 62.7 12.1 100 160-261 6-108 (112)
172 1elr_A TPR2A-domain of HOP; HO 98.6 7.5E-07 2.6E-11 65.2 11.8 99 162-262 6-111 (131)
173 3q49_B STIP1 homology and U bo 98.6 1.5E-06 5E-11 64.4 13.0 99 159-259 8-106 (137)
174 3k9i_A BH0479 protein; putativ 98.6 8.2E-08 2.8E-12 69.2 5.8 61 367-427 29-89 (117)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 4.5E-07 1.5E-11 82.4 11.7 94 333-426 317-413 (457)
176 1dce_A Protein (RAB geranylger 98.5 6.2E-06 2.1E-10 76.7 19.2 171 245-417 44-244 (567)
177 1hxi_A PEX5, peroxisome target 98.5 1.2E-06 4E-11 63.4 11.3 95 163-259 20-114 (121)
178 1elr_A TPR2A-domain of HOP; HO 98.5 1.5E-06 5.3E-11 63.5 11.9 96 196-292 5-108 (131)
179 3ro3_A PINS homolog, G-protein 98.5 2.5E-07 8.6E-12 70.8 7.8 63 366-428 90-158 (164)
180 3rkv_A Putative peptidylprolyl 98.5 3.8E-07 1.3E-11 70.0 8.4 102 298-399 11-131 (162)
181 1wao_1 Serine/threonine protei 98.5 3.1E-07 1.1E-11 83.8 8.9 117 306-423 14-134 (477)
182 4b4t_Q 26S proteasome regulato 98.5 7.4E-06 2.5E-10 74.0 17.5 193 167-359 11-242 (434)
183 2xev_A YBGF; tetratricopeptide 98.5 7.9E-06 2.7E-10 59.6 14.3 96 165-262 7-108 (129)
184 2if4_A ATFKBP42; FKBP-like, al 98.4 2.8E-07 9.4E-12 80.2 7.0 150 263-431 179-331 (338)
185 1ihg_A Cyclophilin 40; ppiase 98.4 9E-07 3.1E-11 77.9 10.2 90 332-421 272-363 (370)
186 3n71_A Histone lysine methyltr 98.4 1.2E-06 4.2E-11 79.4 10.7 123 307-429 318-465 (490)
187 3rkv_A Putative peptidylprolyl 98.4 7.2E-06 2.4E-10 62.8 13.1 101 160-261 11-128 (162)
188 3k9i_A BH0479 protein; putativ 98.4 2.8E-07 9.5E-12 66.3 4.0 91 311-401 3-97 (117)
189 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 7.8E-06 2.7E-10 74.3 14.1 139 144-283 249-405 (457)
190 3ro3_A PINS homolog, G-protein 98.3 6.1E-06 2.1E-10 62.9 11.3 62 265-326 91-157 (164)
191 2hr2_A Hypothetical protein; a 98.3 1.6E-06 5.5E-11 64.7 7.2 121 263-407 11-144 (159)
192 1wao_1 Serine/threonine protei 98.3 2.9E-06 9.9E-11 77.5 10.0 120 166-287 12-134 (477)
193 2l6j_A TPR repeat-containing p 98.3 2.2E-07 7.6E-12 66.0 2.1 92 333-424 4-103 (111)
194 3ma5_A Tetratricopeptide repea 98.3 4E-06 1.4E-10 58.1 8.3 65 364-428 6-70 (100)
195 1ihg_A Cyclophilin 40; ppiase 98.3 1E-05 3.6E-10 71.0 12.7 136 161-317 224-360 (370)
196 2if4_A ATFKBP42; FKBP-like, al 98.2 5.3E-06 1.8E-10 72.1 10.3 145 161-326 180-327 (338)
197 2kat_A Uncharacterized protein 98.2 4.7E-06 1.6E-10 59.6 7.4 81 316-397 3-85 (115)
198 1zu2_A Mitochondrial import re 98.2 1.2E-06 4.2E-11 65.1 3.8 96 310-428 14-120 (158)
199 3bee_A Putative YFRE protein; 98.1 1.5E-05 5.3E-10 53.9 8.6 73 362-435 3-78 (93)
200 1na3_A Designed protein CTPR2; 98.1 8.5E-06 2.9E-10 55.1 7.2 80 334-413 10-91 (91)
201 2l6j_A TPR repeat-containing p 98.1 1.6E-05 5.4E-10 56.2 8.1 68 363-430 2-69 (111)
202 1klx_A Cysteine rich protein B 98.0 4E-05 1.4E-09 56.6 9.7 88 340-429 32-127 (138)
203 1dce_A Protein (RAB geranylger 98.0 0.00033 1.1E-08 65.2 17.8 172 176-351 45-244 (567)
204 3n71_A Histone lysine methyltr 98.0 5.3E-05 1.8E-09 68.8 11.6 123 205-327 319-464 (490)
205 1klx_A Cysteine rich protein B 97.9 0.00011 3.8E-09 54.2 10.3 112 277-396 9-128 (138)
206 1zu2_A Mitochondrial import re 97.9 5.5E-05 1.9E-09 56.3 8.3 92 173-266 15-127 (158)
207 3qww_A SET and MYND domain-con 97.9 4.8E-05 1.6E-09 67.9 8.9 83 345-427 310-410 (433)
208 1na3_A Designed protein CTPR2; 97.9 0.00028 9.6E-09 47.4 11.0 62 162-224 11-72 (91)
209 2kat_A Uncharacterized protein 97.8 0.00025 8.6E-09 50.3 10.9 78 179-258 4-81 (115)
210 3lvg_A Clathrin heavy chain 1; 97.8 1.1E-06 3.7E-11 76.6 -2.1 238 28-283 54-324 (624)
211 2kc7_A BFR218_protein; tetratr 97.8 5.6E-05 1.9E-09 52.0 6.3 80 339-426 6-88 (99)
212 3qwp_A SET and MYND domain-con 97.7 0.00014 4.8E-09 65.0 9.6 85 343-427 297-399 (429)
213 3ma5_A Tetratricopeptide repea 97.7 0.00036 1.2E-08 48.0 9.4 60 197-257 9-68 (100)
214 2kc7_A BFR218_protein; tetratr 97.7 0.00013 4.5E-09 50.1 6.8 61 370-430 5-66 (99)
215 3qwp_A SET and MYND domain-con 97.6 0.00032 1.1E-08 62.7 9.7 99 305-403 294-414 (429)
216 3qww_A SET and MYND domain-con 97.6 0.00022 7.4E-09 63.7 8.5 93 310-402 310-424 (433)
217 3u64_A Protein TP_0956; tetrat 97.4 0.00052 1.8E-08 56.3 8.1 87 350-436 180-277 (301)
218 3ly7_A Transcriptional activat 97.4 0.0034 1.1E-07 53.9 13.3 64 262-327 276-339 (372)
219 3mkq_A Coatomer beta'-subunit; 97.4 0.013 4.4E-07 57.5 19.3 100 241-359 663-762 (814)
220 1wy6_A Hypothetical protein ST 97.4 0.0037 1.3E-07 44.2 10.6 141 273-431 17-157 (172)
221 3mkq_A Coatomer beta'-subunit; 97.3 0.09 3.1E-06 51.5 23.9 151 74-255 610-761 (814)
222 3ly7_A Transcriptional activat 97.3 0.054 1.8E-06 46.5 19.0 143 158-304 192-349 (372)
223 3lvg_A Clathrin heavy chain 1; 97.2 0.00012 4E-09 64.2 2.1 225 11-250 68-324 (624)
224 3bee_A Putative YFRE protein; 97.2 0.0092 3.1E-07 40.1 10.8 51 211-262 25-75 (93)
225 1pc2_A Mitochondria fission pr 97.1 0.0012 4E-08 48.6 6.4 89 312-401 12-107 (152)
226 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0039 1.3E-07 43.1 8.2 69 337-405 9-86 (104)
227 1pc2_A Mitochondria fission pr 96.9 0.017 5.9E-07 42.4 11.2 85 176-262 14-103 (152)
228 3mkq_B Coatomer subunit alpha; 96.9 0.045 1.5E-06 41.4 13.7 127 240-391 15-141 (177)
229 2v5f_A Prolyl 4-hydroxylase su 96.8 0.005 1.7E-07 42.5 7.3 66 364-429 4-76 (104)
230 1nzn_A CGI-135 protein, fissio 96.3 0.042 1.4E-06 38.8 9.2 88 174-262 15-106 (126)
231 1wy6_A Hypothetical protein ST 96.3 0.18 6.3E-06 35.8 16.4 147 66-227 8-157 (172)
232 1nzn_A CGI-135 protein, fissio 96.2 0.043 1.5E-06 38.8 8.7 86 315-401 18-110 (126)
233 4gns_B Protein CSD3, chitin bi 96.1 0.14 4.8E-06 48.8 14.2 59 368-426 340-398 (754)
234 4h7y_A Dual specificity protei 96.0 0.019 6.4E-07 41.6 6.3 112 295-407 10-136 (161)
235 3u64_A Protein TP_0956; tetrat 96.0 0.079 2.7E-06 43.6 10.8 82 247-328 180-270 (301)
236 3mkq_B Coatomer subunit alpha; 96.0 0.34 1.2E-05 36.6 17.1 127 206-360 16-142 (177)
237 4h7y_A Dual specificity protei 95.8 0.09 3.1E-06 38.2 9.1 101 261-363 11-125 (161)
238 1qsa_A Protein (soluble lytic 95.7 1.3 4.6E-05 41.3 26.3 114 277-393 228-347 (618)
239 4ady_A RPN2, 26S proteasome re 95.7 1.7 5.9E-05 42.5 21.7 255 135-392 380-656 (963)
240 4b4t_P 26S proteasome regulato 95.1 1.6 5.4E-05 39.1 17.0 90 337-426 141-245 (445)
241 3o48_A Mitochondria fission 1 94.6 0.1 3.5E-06 37.0 6.3 71 330-400 37-113 (134)
242 1y8m_A FIS1; mitochondria, unk 94.6 0.41 1.4E-05 34.5 9.4 71 330-400 36-112 (144)
243 2ff4_A Probable regulatory pro 94.2 0.11 3.9E-06 45.6 7.4 59 369-427 175-233 (388)
244 3ffl_A Anaphase-promoting comp 94.1 0.26 8.7E-06 36.6 7.7 27 400-426 123-149 (167)
245 4fhn_B Nucleoporin NUP120; pro 93.9 3.4 0.00012 42.2 18.1 80 231-312 900-985 (1139)
246 3o48_A Mitochondria fission 1 93.5 0.94 3.2E-05 32.2 9.4 71 192-262 37-110 (134)
247 3ffl_A Anaphase-promoting comp 93.2 1.2 4.2E-05 33.0 10.0 29 231-259 123-151 (167)
248 4gns_B Protein CSD3, chitin bi 93.2 0.69 2.3E-05 44.2 11.0 122 166-289 254-397 (754)
249 2wpv_A GET4, UPF0363 protein Y 92.9 3.7 0.00013 34.5 21.6 165 235-427 38-216 (312)
250 1y8m_A FIS1; mitochondria, unk 92.6 2.1 7.1E-05 30.9 11.0 71 192-262 36-109 (144)
251 4fhn_B Nucleoporin NUP120; pro 92.6 7 0.00024 40.0 18.1 81 198-278 902-986 (1139)
252 3lpz_A GET4 (YOR164C homolog); 92.6 4.3 0.00015 34.4 23.6 164 236-427 41-215 (336)
253 3ltm_A Alpha-REP4; protein eng 92.5 3 0.0001 32.6 18.7 93 126-223 92-184 (211)
254 1v54_E Cytochrome C oxidase po 92.2 1.3 4.3E-05 29.6 7.9 63 278-341 25-87 (109)
255 1zbp_A Hypothetical protein VP 91.9 1.9 6.5E-05 35.0 10.4 119 273-401 7-136 (273)
256 2ff4_A Probable regulatory pro 91.8 0.72 2.5E-05 40.5 8.7 53 236-288 177-230 (388)
257 1v54_E Cytochrome C oxidase po 91.6 1.5 5.1E-05 29.3 7.7 47 178-224 28-74 (109)
258 4ady_A RPN2, 26S proteasome re 91.1 12 0.00043 36.7 30.0 253 170-427 384-657 (963)
259 4b4t_P 26S proteasome regulato 90.3 9.6 0.00033 34.0 20.2 94 266-359 140-244 (445)
260 1zbp_A Hypothetical protein VP 89.9 0.8 2.7E-05 37.1 6.5 54 375-428 7-60 (273)
261 2uwj_G Type III export protein 89.9 3 0.0001 27.7 9.8 88 209-303 20-107 (115)
262 3lpz_A GET4 (YOR164C homolog); 89.9 8.2 0.00028 32.7 21.0 167 132-326 38-215 (336)
263 2p58_C Putative type III secre 89.5 3.3 0.00011 27.5 10.0 88 209-303 21-108 (116)
264 2y69_E Cytochrome C oxidase su 89.5 2.6 9E-05 29.8 7.9 63 278-341 68-130 (152)
265 3ltm_A Alpha-REP4; protein eng 88.8 7.1 0.00024 30.4 18.8 17 97-113 32-48 (211)
266 3esl_A Checkpoint serine/threo 87.9 5.1 0.00018 30.9 9.3 47 349-395 95-145 (202)
267 3ltj_A Alpharep-4; protein eng 87.6 8.2 0.00028 29.7 19.0 119 17-143 17-135 (201)
268 4b4t_R RPN7, 26S proteasome re 87.5 5.9 0.0002 35.2 11.2 95 300-394 133-237 (429)
269 2y69_E Cytochrome C oxidase su 87.4 4.1 0.00014 28.9 7.7 46 179-224 72-117 (152)
270 2wpv_A GET4, UPF0363 protein Y 85.9 15 0.0005 30.9 20.0 124 30-168 35-173 (312)
271 3ltj_A Alpharep-4; protein eng 85.2 11 0.00038 29.0 19.4 17 158-174 88-104 (201)
272 4a1g_A Mitotic checkpoint seri 84.6 9.5 0.00033 27.9 9.0 48 384-431 84-133 (152)
273 2wvi_A Mitotic checkpoint seri 82.0 13 0.00044 27.6 8.9 30 366-395 97-126 (164)
274 1oyz_A Hypothetical protein YI 81.5 20 0.0007 29.2 22.2 58 229-291 205-262 (280)
275 3txn_A 26S proteasome regulato 81.1 27 0.00093 30.4 22.0 157 100-256 21-207 (394)
276 4b4t_R RPN7, 26S proteasome re 80.4 13 0.00046 32.9 10.3 61 197-257 133-195 (429)
277 4b4t_S RPN3, 26S proteasome re 79.8 10 0.00036 34.2 9.2 60 130-189 232-299 (523)
278 3esl_A Checkpoint serine/threo 78.3 21 0.00072 27.5 10.6 53 279-331 95-148 (202)
279 2d2s_A Exocyst complex compone 75.4 28 0.00097 27.7 9.8 88 33-123 23-116 (235)
280 2zu6_B Programmed cell death p 74.1 27 0.00094 29.2 9.8 23 199-221 7-29 (307)
281 2qx5_A Nucleoporin NIC96; mRNA 73.3 63 0.0022 30.5 17.7 350 33-425 157-564 (661)
282 3txn_A 26S proteasome regulato 72.0 50 0.0017 28.8 29.6 287 131-430 21-345 (394)
283 4aez_C MAD3, mitotic spindle c 70.5 19 0.00063 28.4 7.4 31 365-395 150-180 (223)
284 1qsa_A Protein (soluble lytic 68.1 80 0.0027 29.6 37.5 200 174-390 228-438 (618)
285 2uwj_G Type III export protein 62.4 32 0.0011 23.0 10.4 54 142-198 52-105 (115)
286 2r9g_A AAA ATPase, central reg 61.2 54 0.0018 25.2 9.7 64 163-227 14-85 (204)
287 2p58_C Putative type III secre 61.1 34 0.0012 22.9 11.1 49 140-190 51-99 (116)
288 1wdy_A 2-5A-dependent ribonucl 61.1 63 0.0022 26.0 11.6 21 135-155 8-28 (285)
289 3mv2_A Coatomer subunit alpha; 60.9 74 0.0025 26.7 11.1 60 355-428 195-256 (325)
290 3bge_A Predicted ATPase; struc 60.1 56 0.0019 25.0 8.8 46 164-209 8-56 (201)
291 4b4t_S RPN3, 26S proteasome re 59.8 30 0.001 31.3 7.6 61 299-359 232-296 (523)
292 1wdy_A 2-5A-dependent ribonucl 58.9 69 0.0024 25.7 10.2 17 343-359 226-242 (285)
293 3bqo_A Telomeric repeat-bindin 57.1 57 0.002 25.0 7.4 53 349-401 94-153 (211)
294 3ctd_A Putative ATPase, AAA fa 56.7 67 0.0023 24.9 8.9 69 159-227 31-107 (213)
295 2ion_A PDCD4, programmed cell 55.7 51 0.0017 24.1 7.1 62 234-297 13-79 (152)
296 1oyz_A Hypothetical protein YI 55.3 82 0.0028 25.5 24.3 16 97-112 36-51 (280)
297 3jxi_A Vanilloid receptor-rela 54.6 24 0.00083 28.3 6.0 56 35-90 9-73 (260)
298 4gq2_M Nucleoporin NUP120; bet 53.5 89 0.003 31.2 10.6 87 304-395 816-927 (950)
299 2d2s_A Exocyst complex compone 53.0 58 0.002 25.9 7.5 89 268-359 23-117 (235)
300 2nsz_A Programmed cell death p 52.7 58 0.002 22.9 7.5 24 164-187 11-34 (129)
301 2nsz_A Programmed cell death p 51.3 61 0.0021 22.8 8.4 64 233-298 10-78 (129)
302 3mkr_B Coatomer subunit alpha; 51.1 1.1E+02 0.0037 25.7 12.6 60 355-428 186-247 (320)
303 4aez_C MAD3, mitotic spindle c 50.6 90 0.0031 24.5 9.1 54 45-98 131-185 (223)
304 3kea_A K1L; tropism, ANK repea 50.4 60 0.0021 26.5 7.8 12 11-22 10-21 (285)
305 3ygs_P Procaspase 9; apoptosis 49.1 22 0.00074 23.6 3.9 36 43-82 52-87 (97)
306 2ion_A PDCD4, programmed cell 48.9 51 0.0017 24.1 6.2 25 163-187 12-36 (152)
307 2fu4_A Ferric uptake regulatio 47.1 51 0.0017 20.7 6.1 60 53-113 7-67 (83)
308 4a1g_A Mitotic checkpoint seri 46.9 82 0.0028 23.0 11.4 43 82-124 84-127 (152)
309 2zu6_B Programmed cell death p 46.4 1.3E+02 0.0044 25.1 12.4 21 5-27 13-33 (307)
310 1ya0_A SMG-7 transcript varian 44.5 89 0.003 28.3 8.2 42 381-422 168-209 (497)
311 4gq2_M Nucleoporin NUP120; bet 44.4 2.5E+02 0.0087 28.0 13.7 48 197-244 899-950 (950)
312 2w57_A Ferric uptake regulatio 44.3 63 0.0021 23.5 6.1 62 52-114 6-68 (150)
313 3b7b_A Euchromatic histone-lys 43.1 92 0.0031 24.2 7.6 21 407-427 215-235 (237)
314 2wvi_A Mitotic checkpoint seri 42.9 1E+02 0.0034 22.9 11.7 54 46-99 78-132 (164)
315 1mzb_A Ferric uptake regulatio 42.1 58 0.002 23.1 5.5 61 53-114 8-69 (136)
316 3kea_A K1L; tropism, ANK repea 40.6 1.5E+02 0.005 24.1 9.9 75 173-255 9-84 (285)
317 3ygs_P Procaspase 9; apoptosis 39.8 54 0.0019 21.6 4.7 28 114-141 53-80 (97)
318 3l6a_A Eukaryotic translation 39.6 1.8E+02 0.0063 25.0 12.6 27 101-127 15-41 (364)
319 3eyy_A Putative iron uptake re 37.7 56 0.0019 23.6 4.9 59 53-113 9-67 (145)
320 4ets_A Ferric uptake regulatio 37.4 60 0.002 24.0 5.1 70 44-114 13-85 (162)
321 2fe3_A Peroxide operon regulat 37.3 75 0.0026 22.8 5.6 62 52-114 11-72 (145)
322 1k1a_A B-cell lymphoma 3-encod 36.8 1.5E+02 0.005 23.0 8.6 182 237-431 13-208 (241)
323 3hra_A Ankyrin repeat family p 36.0 1.3E+02 0.0046 22.4 7.7 111 239-359 11-129 (201)
324 2ko4_A Mediator of RNA polymer 36.0 53 0.0018 20.6 3.7 38 17-54 23-62 (81)
325 2fe3_A Peroxide operon regulat 35.6 1E+02 0.0034 22.1 6.0 60 185-245 12-71 (145)
326 2xig_A Ferric uptake regulatio 35.4 1.1E+02 0.0038 22.1 6.2 62 52-114 16-77 (150)
327 4ets_A Ferric uptake regulatio 34.3 90 0.0031 23.0 5.7 38 28-65 32-71 (162)
328 3eu9_A Huntingtin-interacting 34.1 1.6E+02 0.0055 22.7 9.1 209 204-428 15-236 (240)
329 2pnn_A Transient receptor pote 33.5 1.3E+02 0.0043 24.2 7.1 55 36-90 18-81 (273)
330 3hra_A Ankyrin repeat family p 33.5 1.5E+02 0.0051 22.1 8.2 15 318-332 158-172 (201)
331 2b7e_A PRE-mRNA processing pro 31.9 76 0.0026 18.7 3.8 30 44-73 2-31 (59)
332 2w57_A Ferric uptake regulatio 31.8 1.3E+02 0.0046 21.7 6.2 61 288-349 7-68 (150)
333 2ijq_A Hypothetical protein; s 30.9 1.6E+02 0.0055 21.7 8.0 17 275-291 87-103 (161)
334 3bu8_A Telomeric repeat-bindin 30.9 1.9E+02 0.0065 22.6 8.1 22 237-258 121-142 (235)
335 3qye_A TBC1 domain family memb 30.4 2.4E+02 0.0083 23.6 10.1 129 43-175 164-309 (331)
336 2cfu_A SDSA1; SDS-hydrolase, l 29.5 1E+02 0.0035 29.1 6.5 62 350-414 437-498 (658)
337 1bpo_A Protein (clathrin); cla 29.2 3.1E+02 0.011 24.5 11.8 110 11-122 343-453 (494)
338 3jxi_A Vanilloid receptor-rela 29.2 1.7E+02 0.006 23.0 7.3 51 273-323 12-71 (260)
339 2crb_A Nuclear receptor bindin 28.2 86 0.0029 20.5 3.8 24 368-391 18-41 (97)
340 3eu9_A Huntingtin-interacting 28.1 1.4E+02 0.0047 23.1 6.3 11 310-320 219-229 (240)
341 3eyy_A Putative iron uptake re 27.7 1.3E+02 0.0044 21.6 5.5 58 16-74 6-63 (145)
342 1n11_A Ankyrin; clathrin, BAND 27.5 3.1E+02 0.01 23.9 13.0 332 69-432 17-370 (437)
343 3mwm_A ZUR, putative metal upt 27.3 74 0.0025 22.7 4.0 46 68-113 18-63 (139)
344 1oai_A Nuclear RNA export fact 27.2 61 0.0021 19.1 2.9 24 275-298 32-56 (59)
345 1ug3_A EIF4GI, eukaryotic prot 26.9 2.9E+02 0.0098 23.4 13.6 26 102-127 15-40 (339)
346 2p1h_A APAF-1, apoptotic prote 26.4 1.3E+02 0.0046 19.4 6.2 32 112-143 50-81 (94)
347 3mwm_A ZUR, putative metal upt 26.2 89 0.003 22.3 4.3 44 31-74 16-59 (139)
348 2o03_A Probable zinc uptake re 26.2 1E+02 0.0034 21.7 4.5 37 77-113 24-60 (131)
349 2o03_A Probable zinc uptake re 25.6 72 0.0025 22.4 3.7 34 32-65 14-47 (131)
350 1n11_A Ankyrin; clathrin, BAND 25.4 3.3E+02 0.011 23.6 11.8 294 104-422 17-331 (437)
351 3l6a_A Eukaryotic translation 25.2 3.2E+02 0.011 23.4 13.5 23 199-221 16-38 (364)
352 1k1a_A B-cell lymphoma 3-encod 25.1 2.4E+02 0.008 21.7 9.4 25 169-193 15-39 (241)
353 2ijq_A Hypothetical protein; s 24.7 2.1E+02 0.0072 21.1 7.1 54 274-327 43-104 (161)
354 1bpo_A Protein (clathrin); cla 24.7 3.8E+02 0.013 24.0 12.1 114 271-391 369-482 (494)
355 2qfz_A TBC1 domain family memb 24.4 1.9E+02 0.0066 24.5 6.8 106 49-154 230-345 (345)
356 3m0z_A Putative aldolase; MCSG 24.1 93 0.0032 24.4 4.1 79 349-427 147-246 (249)
357 3uzd_A 14-3-3 protein gamma; s 23.9 2.8E+02 0.0096 22.2 11.3 39 202-240 11-49 (248)
358 2fu4_A Ferric uptake regulatio 23.5 1.4E+02 0.0048 18.5 6.5 59 185-244 7-66 (83)
359 2f6m_A Suppressor protein STP2 23.5 1.3E+02 0.0044 18.1 4.0 44 266-310 5-48 (65)
360 2br9_A 14-3-3E, 14-3-3 protein 23.3 2.8E+02 0.0096 22.0 11.6 18 376-393 184-201 (234)
361 1mzb_A Ferric uptake regulatio 23.1 2E+02 0.0069 20.2 6.4 45 29-73 18-63 (136)
362 3ljn_A Hypothetical protein; a 22.4 3.5E+02 0.012 22.7 11.0 16 343-358 180-195 (364)
363 1zl8_A LIN-7; heterodimer, alp 22.4 1.1E+02 0.0039 17.1 3.1 15 44-58 9-23 (53)
364 3ubw_A 14-3-3E, 14-3-3 protein 21.6 3.2E+02 0.011 22.1 13.0 57 200-256 36-93 (261)
365 3lxu_X Tripeptidyl-peptidase 2 21.5 5.8E+02 0.02 26.7 10.1 36 207-244 1296-1331(1354)
366 2cwy_A Hypothetical protein TT 20.9 1.8E+02 0.0063 19.0 5.5 51 274-326 12-67 (94)
367 2qq8_A TBC1 domain family memb 20.9 2.1E+02 0.0072 24.1 6.3 44 285-328 215-258 (334)
368 2rg8_A Programmed cell death p 20.8 1.1E+02 0.0036 22.7 3.9 25 31-55 13-37 (165)
369 2keb_A DNA polymerase subunit 20.7 1.9E+02 0.0066 19.1 5.3 31 282-312 28-58 (101)
370 2rpa_A Katanin P60 ATPase-cont 20.0 1E+02 0.0036 19.4 3.1 25 369-393 16-40 (78)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-41 Score=319.84 Aligned_cols=412 Identities=11% Similarity=-0.035 Sum_probs=318.6
Q ss_pred CChhhHHHHhhhcCCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHH
Q 039362 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90 (440)
Q Consensus 11 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 90 (440)
|.+..+...+...+.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+++.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 144 (597)
T 2xpi_A 67 GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKED 144 (597)
T ss_dssp ---------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh
Confidence 4555555555555556666666666666666666666666666664 34555666666666666666666666666654
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCC-------------------chhhHHHHHHHHHhcCChHHHHHH
Q 039362 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK-------------------MSVSWNSMLDGYAKCGEMNMARQV 151 (440)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~a~~~ 151 (440)
.. +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|++.
T Consensus 145 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 145 LY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp GG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 32 445666666666666666666666666643322 245666666666666666666655
Q ss_pred HhhC------------------------------------------------------------------------CC--
Q 039362 152 FELM------------------------------------------------------------------------PE-- 157 (440)
Q Consensus 152 ~~~~------------------------------------------------------------------------~~-- 157 (440)
|+++ .+
T Consensus 223 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 302 (597)
T 2xpi_A 223 YKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE 302 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGG
T ss_pred HHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCC
Confidence 5544 33
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHH
Q 039362 158 RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237 (440)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 237 (440)
++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 380 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVG 380 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 456677888888888899999999998888765 4467788888888888999999999998888665 67788999999
Q ss_pred HHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHH
Q 039362 238 DMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVME 316 (440)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 316 (440)
.+|.+.|++++|..+|+++.+..| +..+|+.++..|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999987766 57799999999999999999999999998875 5577899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-------CCCcc--HhHHHHHHHHHHhcCChhHHHHH
Q 039362 317 AWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-------PLEPT--ASMLGSLLTGCMNHGKLDLAEIV 387 (440)
Q Consensus 317 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 387 (440)
|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.
T Consensus 460 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999998864 336788999999999999999999999988 44777 68999999999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 388 GKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
++++.+.+|+++.+|..++.+|.+.|++++|.+.++++.+...
T Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 539 LNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999988654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-40 Score=312.95 Aligned_cols=402 Identities=11% Similarity=0.003 Sum_probs=350.8
Q ss_pred ccccccccCChhhHHHHhhhc--CCCChHHHHHHHHHHHccCChhhHHHHHHHHHHc---------------CCCCCcch
Q 039362 3 SFSALSYLGNIDYSCKVLSHL--SNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRA---------------GVSPDHLT 65 (440)
Q Consensus 3 ~~y~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~ 65 (440)
..|..+ |++++|..+|+.+ .+++..+++.++..|.+.|++++|+++|+++... +.+++..+
T Consensus 125 ~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (597)
T 2xpi_A 125 QVYCCT--GDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASM 202 (597)
T ss_dssp HHHHHT--TCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHH
T ss_pred HHHHHc--CcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHH
Confidence 456666 8999999999887 4778889999999999999999999999853211 12234678
Q ss_pred HHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHH--------------------------------------HHH
Q 039362 66 YPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSL--------------------------------------IHM 107 (440)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~ 107 (440)
|..++.+|.+.|++++|.++|+++.+.++. +...+..+ +..
T Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (597)
T 2xpi_A 203 CYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999887643 33333333 455
Q ss_pred HHhcCCHHHHHHHhhCCCC--CchhhHHHHHHHHHhcCChHHHHHHHhhCCC---CchhhHHHHHHHHHhcCCHHHHHHH
Q 039362 108 YGSCGDIVYAREVFDGMPT--KMSVSWNSMLDGYAKCGEMNMARQVFELMPE---RNVVSWSALIDGYVKCGDYKEALVI 182 (440)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 182 (440)
|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|.++|+++.+ .+..+++.++.++.+.|++++|..+
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6678899999999999987 7888999999999999999999999999864 4678899999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-
Q 039362 183 FEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS- 261 (440)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 261 (440)
++++.... +.+..++..++..|.+.|++++|.++|+++.+.. +.+..++..++.+|.+.|++++|+.+|+++.+..|
T Consensus 362 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (597)
T 2xpi_A 362 SNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439 (597)
T ss_dssp HHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99998664 5678899999999999999999999999999875 66788999999999999999999999999987766
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc----CCCCC--cch
Q 039362 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR----GMVPK--SEH 335 (440)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~ 335 (440)
+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..+.+.|++++|.++|+++.+. +..|+ ..+
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 78899999999999999999999999999875 557889999999999999999999999999886 55777 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 039362 336 YACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410 (440)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (440)
|..++.+|.+.|++++|.+.++++ ...| +..+|..++.+|...|++++|.+.++++.+.+|.++..+..++.+|.
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999998 4445 77899999999999999999999999999999999999988887764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.5e-31 Score=240.35 Aligned_cols=374 Identities=12% Similarity=0.091 Sum_probs=298.8
Q ss_pred HHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 039362 35 IRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114 (440)
Q Consensus 35 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 114 (440)
...+.+.|++++|+..++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 445666777777777777776642 2233445556666677777777777777776654 33666777777777777777
Q ss_pred HHHHHHhhCCCC--C-chhhHHHHHHHHHhcCChHHHHHHHhhCCC--C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039362 115 VYAREVFDGMPT--K-MSVSWNSMLDGYAKCGEMNMARQVFELMPE--R-NVVSWSALIDGYVKCGDYKEALVIFEEMRD 188 (440)
Q Consensus 115 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (440)
++|...|+++.. | +..+|..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777776642 2 344677777777777888888877777654 3 345677788888889999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHH
Q 039362 189 VGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWN 267 (440)
Q Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 267 (440)
.. +.+..++..+...+...|++++|...++++.+.+ +.+...+..+..++...|++++|...|++..+..| +..++.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 64 4456788888889999999999999999998876 66778888999999999999999999999887777 467888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC
Q 039362 268 AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG 347 (440)
Q Consensus 268 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (440)
.+...+...|++++|++.|+++.+.+ +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence 89999999999999999999998864 4456788889999999999999999999998864 346778889999999999
Q ss_pred CHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 039362 348 QVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414 (440)
Q Consensus 348 ~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (440)
++++|.+.++++ ...| +..++..++..+.+.|++++|...++++++..|.++..+..++.++...|+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999988 5555 457888999999999999999999999999999999999999988877663
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.8e-30 Score=233.39 Aligned_cols=356 Identities=14% Similarity=0.091 Sum_probs=313.7
Q ss_pred HHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCC---CchhhHHHHHHHHHhcCCh
Q 039362 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPT---KMSVSWNSMLDGYAKCGEM 145 (440)
Q Consensus 69 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 145 (440)
+...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 345677899999999999999987543 667788888899999999999999987653 3567899999999999999
Q ss_pred HHHHHHHhhCCC--C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039362 146 NMARQVFELMPE--R-NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI 222 (440)
Q Consensus 146 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (440)
++|++.|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|...|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999864 4 45679999999999999999999999998874 3345567778888899999999999999999
Q ss_pred HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhH
Q 039362 223 DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITF 301 (440)
Q Consensus 223 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 301 (440)
+.. +.+..++..+..++...|++++|...|+++.+..|+ ...+..+...+...|++++|+..+++..... +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 876 667889999999999999999999999999988774 6788899999999999999999999998764 4457788
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CC-CccHhHHHHHHHHHHhcC
Q 039362 302 LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PL-EPTASMLGSLLTGCMNHG 379 (440)
Q Consensus 302 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~p~~~~~~~l~~~~~~~g 379 (440)
..+...+...|++++|...|+++.+.+ +.+..++..+...+.+.|++++|.+.++++ .. +++..++..++..+...|
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Confidence 999999999999999999999999864 224678899999999999999999999998 33 446788999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 380 KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
++++|...++++.+..|++..++..++.+|.+.|++++|.+.++++++..
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999998754
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=2e-30 Score=236.73 Aligned_cols=185 Identities=16% Similarity=0.163 Sum_probs=158.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHcCCCCchh
Q 039362 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA---------LDQGRMMLRYMIDKGLSLTLP 231 (440)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 231 (440)
..++.+|++|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35777888888888888888888888888888888888888888876654 577888888888888888888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhhhhc--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHH
Q 039362 232 LQTSLIDMYAKCGAIKEALIVFHGVEKH--QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309 (440)
Q Consensus 232 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 309 (440)
+|+.++.+|++.|++++|.++|++|.+. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 8888888888888888888888888755 68888888888888888888888888888888888888888888888888
Q ss_pred cCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh
Q 039362 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSR 345 (440)
Q Consensus 310 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 345 (440)
+.|+.++|.++|++|.+.|..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888888887765
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.1e-28 Score=224.85 Aligned_cols=267 Identities=12% Similarity=-0.033 Sum_probs=204.3
Q ss_pred hhhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----cCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039362 160 VVSWSALIDGYVK---CGDYKEALVIFEEMRD-----VGSK--------ANEVTLVSVLCACAHLGALDQGRMMLRYMID 223 (440)
Q Consensus 160 ~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (440)
...+......+.. .|++++|...++++.. .... .+...+..+...+...|++++|...++.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344444444444 7888888888888876 3111 2244666777788888888888888888887
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHH
Q 039362 224 KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302 (440)
Q Consensus 224 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 302 (440)
... . ...+..++.+|...|++++|...++++....| +...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus 266 ~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 342 (514)
T 2gw1_A 266 LFP-R-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYI 342 (514)
T ss_dssp HCC-C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHH
T ss_pred hCc-c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHH
Confidence 752 3 77788888888888888888888888877655 56678888888888888888888888887764 34556777
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc-------HhHHHHHHHH
Q 039362 303 GLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPT-------ASMLGSLLTG 374 (440)
Q Consensus 303 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-------~~~~~~l~~~ 374 (440)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ ...|+ ...+..++..
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 78888888888888888888887753 235667778888888888888888888877 22222 2377788888
Q ss_pred HHh---cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 375 CMN---HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 375 ~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
+.. .|++++|...++++.+..|.++.++..++.+|.+.|++++|.+.++++.+...
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 888 88888888888888888888888888888888888888888888888877643
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.9e-29 Score=227.59 Aligned_cols=201 Identities=11% Similarity=0.119 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC---------H
Q 039362 177 KEALVIFEEMRDVGSKAN-EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA---------I 246 (440)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 246 (440)
..+..+.+++.+.+..+. ...++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 344556667776666554 346888999999999999999999999999999999999999999987664 7
Q ss_pred HHHHHHHhhhhhc--CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHH
Q 039362 247 KEALIVFHGVEKH--QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324 (440)
Q Consensus 247 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 324 (440)
++|.++|++|... .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999999865 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC---CCCccHhHHHHHHHHHHh
Q 039362 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM---PLEPTASMLGSLLTGCMN 377 (440)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~p~~~~~~~l~~~~~~ 377 (440)
.+.|+.||..+|+.|+.+|++.|++++|.+++++| +..|+..||+.++..|..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999 899999999999998875
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=9.1e-27 Score=218.57 Aligned_cols=395 Identities=13% Similarity=0.025 Sum_probs=297.0
Q ss_pred hHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039362 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHM 107 (440)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (440)
...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|.+.++++.+.++. +..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4577888888999999999999999988863 346777888889999999999999999999887644 77888889999
Q ss_pred HHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC------------------------------
Q 039362 108 YGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE------------------------------ 157 (440)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------------ 157 (440)
+...|++++|...|+.+ ..++......+..+...+...+|...++.+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999988643 22222222233344444445556665555532
Q ss_pred -------Cchh---hHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCChH
Q 039362 158 -------RNVV---SWSALIDGYVK--------CGDYKEALVIFEEMRDVGSKANE-------VTLVSVLCACAHLGALD 212 (440)
Q Consensus 158 -------~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~ 212 (440)
.+.. ....+...+.. .|++++|..+++++.+.. +.+. .++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 1110 22222222221 247889999999888763 2222 24666667788889999
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039362 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQI 291 (440)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 291 (440)
+|...++.+.+.. |+...+..+..++...|++++|...|+++.+..| +..++..+...+...|++++|...++++.+
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999998875 4477888899999999999999999999887766 477888899999999999999999999887
Q ss_pred cCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-------
Q 039362 292 VGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP------- 363 (440)
Q Consensus 292 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p------- 363 (440)
.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++ ...|
T Consensus 339 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 339 LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 64 4456678888889999999999999999998864 335668888899999999999999999887 2112
Q ss_pred cHhHHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 364 TASMLGSLLTGCMNH----------GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 364 ~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
....+......+... |++++|...++++.+..|.++.++..++.+|...|++++|.+.++++.+...
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 223344555667777 9999999999999999999999999999999999999999999999887653
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.7e-27 Score=218.22 Aligned_cols=393 Identities=10% Similarity=-0.058 Sum_probs=312.9
Q ss_pred ccccccCChhhHHHHhhhcC--CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHH
Q 039362 5 SALSYLGNIDYSCKVLSHLS--NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82 (440)
Q Consensus 5 y~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 82 (440)
|... |++++|...|+++. .|+..+|..+..++.+.|++++|+..++++.+.+ +.+..++..+..++...|++++|
T Consensus 16 ~~~~--g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 16 FFRN--KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHT--SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHh--ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHH
Confidence 4445 99999999999875 5788899999999999999999999999988864 34556788889999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHh--------------------------------------hCC
Q 039362 83 VAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVF--------------------------------------DGM 124 (440)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~--------------------------------------~~~ 124 (440)
...|+.+.+.++. +......++..+........+.+.+ ...
T Consensus 93 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 93 MFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 9999999887643 3333333444333322222222221 111
Q ss_pred C---------CC-chhhHHHHHHHHHh---cCChHHHHHHHhhCCC----------------C-chhhHHHHHHHHHhcC
Q 039362 125 P---------TK-MSVSWNSMLDGYAK---CGEMNMARQVFELMPE----------------R-NVVSWSALIDGYVKCG 174 (440)
Q Consensus 125 ~---------~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~l~~~~~~~~ 174 (440)
. .+ +...+......+.. .|++++|...|+++.+ | +..++..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 0 01 13344444444444 8999999999988754 1 3557888899999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 039362 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254 (440)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 254 (440)
++++|...++++.... |+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+
T Consensus 252 ~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998875 337888889999999999999999999998876 6678889999999999999999999999
Q ss_pred hhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCC-CCC
Q 039362 255 GVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM-VPK 332 (440)
Q Consensus 255 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 332 (440)
++.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .++
T Consensus 329 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp HHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence 9987766 57788899999999999999999999998764 44567888899999999999999999999987621 122
Q ss_pred ----cchHHHHHHHHHh---cCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHH
Q 039362 333 ----SEHYACMVDALSR---AGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYV 403 (440)
Q Consensus 333 ----~~~~~~l~~~~~~---~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 403 (440)
...+..+...+.. .|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+.+|.++..+.
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence 3378899999999 99999999999998 3344 5678889999999999999999999999999999887766
Q ss_pred HH
Q 039362 404 GL 405 (440)
Q Consensus 404 ~l 405 (440)
.+
T Consensus 488 ~~ 489 (514)
T 2gw1_A 488 AI 489 (514)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=2.2e-25 Score=204.43 Aligned_cols=378 Identities=10% Similarity=0.006 Sum_probs=261.2
Q ss_pred hhHHHHhhhcC---CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHH
Q 039362 14 DYSCKVLSHLS---NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90 (440)
Q Consensus 14 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 90 (440)
..+...+..+. +.+...|..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444433 4566789999999999999999999999998763 4567788999999999999999999999999
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCc---h---hhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHH
Q 039362 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKM---S---VSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWS 164 (440)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 164 (440)
+.++. +..++..+..+|.+.|++++|...|+++.+.+ . ..+..+...+. ...+.
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~ 147 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE-------------------MQRLR 147 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------HHHHH
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-------------------HHHHH
Confidence 88644 67888899999999999999999998876532 2 44444443321 11233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 039362 165 ALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244 (440)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 244 (440)
.+...+...|++++|...|+++.... +.+...+..+..++...|++++|...++++.+.. +.+..++..++.+|...|
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 34556677788888888888777653 4466677777777788888888888888777664 556777777888888888
Q ss_pred CHHHHHHHHhhhhhcCCch-hhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCcc-----HhhHHHHHH
Q 039362 245 AIKEALIVFHGVEKHQSDV-LIWNAM------------IGGLAMHGFVKESLELFTEMQIVGITPD-----EITFLGLLS 306 (440)
Q Consensus 245 ~~~~A~~~~~~~~~~~~~~-~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~ 306 (440)
++++|+..|+++.+..|+. ..+..+ +..+...|++++|...|+++.+.. |+ ...+..+..
T Consensus 226 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHH
Confidence 8888888888777666643 333333 667777888888888888877643 33 235667777
Q ss_pred HHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccH-hHHHHHHH-----------
Q 039362 307 ACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTA-SMLGSLLT----------- 373 (440)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~-~~~~~l~~----------- 373 (440)
.+.+.|++++|...++++.+.. +.+...+..+..+|...|++++|...++++ .+.|+. ..+..+..
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 382 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKR 382 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccch
Confidence 7778888888888888877653 225667777788888888888888888877 555643 44444442
Q ss_pred -HHHhcC-----ChhHHHHHHHH-HHhcCCCCCc----------hHHHHHHHHHhccChHH
Q 039362 374 -GCMNHG-----KLDLAEIVGKK-LVELQPDHDG----------RYVGLSNVYAIFKRWDE 417 (440)
Q Consensus 374 -~~~~~g-----~~~~a~~~~~~-~~~~~~~~~~----------~~~~l~~~~~~~g~~~~ 417 (440)
.|...| +.+++.+.+++ +.+..|++.. .+..+..+|...|+.++
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred hHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 233334 56777888886 6666665432 34455555555555444
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=9.7e-26 Score=206.76 Aligned_cols=333 Identities=12% Similarity=0.034 Sum_probs=243.8
Q ss_pred cchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhc
Q 039362 63 HLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKC 142 (440)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (440)
...+..+...+.+.|++++|..+|+.+.+..+ .+..++..+..++...|++++|...|+++.+.+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 90 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------------- 90 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 34455555555555555555555555554432 244445555555555555555555444432210
Q ss_pred CChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHH------------HHHHHh
Q 039362 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE---VTLVSV------------LCACAH 207 (440)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~ 207 (440)
..+..++..+..+|.+.|++++|...|+++.... +.+. ..+..+ ...+..
T Consensus 91 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 155 (450)
T 2y4t_A 91 --------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFG 155 (450)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234566666677777777777777777766542 2222 333333 445888
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHH
Q 039362 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELF 286 (440)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 286 (440)
.|++++|...++.+.+.. +.+..++..++.+|...|++++|...|+++.+..| +..++..++..+...|++++|+..|
T Consensus 156 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999876 67888999999999999999999999999987654 6789999999999999999999999
Q ss_pred HHHHHcCCCccHhhHHHH------------HHHHHcCCChHHHHHHHHHHhhcCCCCC-----cchHHHHHHHHHhcCCH
Q 039362 287 TEMQIVGITPDEITFLGL------------LSACAHGGLVMEAWYFFKSLGKRGMVPK-----SEHYACMVDALSRAGQV 349 (440)
Q Consensus 287 ~~m~~~~~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~ 349 (440)
+++.... +.+...+..+ ...+.+.|++++|...|+++.+.. |+ ...+..++..+.+.|++
T Consensus 235 ~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 235 RECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCH
Confidence 9998763 3333444444 788899999999999999999853 44 34678889999999999
Q ss_pred HHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHH------------HHhcc--
Q 039362 350 TEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNV------------YAIFK-- 413 (440)
Q Consensus 350 ~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-- 413 (440)
++|...++++ ...| +...|..++.+|...|++++|...++++++..|.++.++..++.+ |...|
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 9999999997 4445 578899999999999999999999999999999999888888844 44445
Q ss_pred ---ChHHHHHHHHH-HHhcC
Q 039362 414 ---RWDEARTTREA-METRG 429 (440)
Q Consensus 414 ---~~~~A~~~~~~-~~~~~ 429 (440)
+.+++.+.+++ ..+..
T Consensus 392 ~~~~~~~~~~~y~~~~l~~~ 411 (450)
T 2y4t_A 392 RNAKKQEIIKAYRKLALQWH 411 (450)
T ss_dssp TTCCTTHHHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHHHHHHHhC
Confidence 56677777776 44433
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=2.7e-24 Score=201.73 Aligned_cols=387 Identities=12% Similarity=0.014 Sum_probs=297.4
Q ss_pred ccccccCChhhHHHHhhhcC---CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHH
Q 039362 5 SALSYLGNIDYSCKVLSHLS---NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKREL 81 (440)
Q Consensus 5 y~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (440)
|... |++++|.+.|+++. +.++.+|..+...+.+.|++++|+..|+++.+.+ +.+..++..+..++...|++++
T Consensus 35 ~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 35 FFTA--KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHT--TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHh--ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 4445 99999999999864 5678899999999999999999999999998864 3456788999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCC-------------------------------------
Q 039362 82 AVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGM------------------------------------- 124 (440)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------------------------------------- 124 (440)
|...|+ .....+.+.. ..+..+...+....|...++.+
T Consensus 112 A~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLS-VLSLNGDFDG----ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHH-HHhcCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 999996 4333222111 1122233333334444444433
Q ss_pred CCCchh---hHHHHHHHHHh--------cCChHHHHHHHhhCCC--Cc--------hhhHHHHHHHHHhcCCHHHHHHHH
Q 039362 125 PTKMSV---SWNSMLDGYAK--------CGEMNMARQVFELMPE--RN--------VVSWSALIDGYVKCGDYKEALVIF 183 (440)
Q Consensus 125 ~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~~~~a~~~~ 183 (440)
...+.. ....+...+.. .|++++|..+|+++.+ |+ ..++..+...+...|++++|...+
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 322211 22222222222 2478999999998875 32 235777778899999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-c
Q 039362 184 EEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-D 262 (440)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 262 (440)
+++... .|+...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|+++.+..| +
T Consensus 267 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 343 (537)
T 3fp2_A 267 QESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343 (537)
T ss_dssp HHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 999887 4557888889999999999999999999999886 67788999999999999999999999999988766 4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCC-C----CcchHH
Q 039362 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-P----KSEHYA 337 (440)
Q Consensus 263 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~ 337 (440)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.... + ....+.
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 7789999999999999999999999998874 455678889999999999999999999998876211 1 111244
Q ss_pred HHHHHHHhc----------CCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHH
Q 039362 338 CMVDALSRA----------GQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYV 403 (440)
Q Consensus 338 ~l~~~~~~~----------~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 403 (440)
.+...+... |++++|...++++ ...| +...+..+...+...|++++|...++++.+..|.++....
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 456677777 9999999999998 4444 5678899999999999999999999999999998876543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=1.7e-22 Score=179.27 Aligned_cols=309 Identities=13% Similarity=0.056 Sum_probs=184.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhCCCC---CchhhHHHHHHHHHhcCChHHHHHHHhhCCC--C-chhhHHHHHHHH
Q 039362 97 DLFISNSLIHMYGSCGDIVYAREVFDGMPT---KMSVSWNSMLDGYAKCGEMNMARQVFELMPE--R-NVVSWSALIDGY 170 (440)
Q Consensus 97 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 170 (440)
++..+..+...+...|++++|...|+++.+ .+...+..+..++...|++++|...|+++.+ | +...+..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 345666677777777777777777776643 2455666677777777777777777776653 2 455666777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC---CCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHH
Q 039362 171 VKCGDYKEALVIFEEMRDVGSK---ANEVTLVSV------------LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTS 235 (440)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (440)
...|++++|...++++.+.. + .+...+..+ ...+...|++++|...++.+.+.. +.+...+..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 77777777777777776552 1 123333333 355566666677776666666654 455566666
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHH-----------
Q 039362 236 LIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG----------- 303 (440)
Q Consensus 236 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----------- 303 (440)
+..++...|++++|...++++.+..| +...+..+...+...|++++|...+++..+.. +.+...+..
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHH
Confidence 66666666667666666666665544 45566666666666666666666666666542 222222221
Q ss_pred -HHHHHHcCCChHHHHHHHHHHhhcCCCCCc-----chHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHH
Q 039362 304 -LLSACAHGGLVMEAWYFFKSLGKRGMVPKS-----EHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGC 375 (440)
Q Consensus 304 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 375 (440)
+...+.+.|++++|...++++.+.. |+. ..+..+...+...|++++|.+.+++. ...| +..++..+...+
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 1334555666666666666665542 221 11333455556666666666666655 2233 445555566666
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 039362 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410 (440)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (440)
...|++++|...++++.+.+|.++..+..+..+..
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 66666666666666666666665555555544443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=2.1e-22 Score=178.65 Aligned_cols=319 Identities=10% Similarity=-0.016 Sum_probs=239.0
Q ss_pred ChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039362 27 RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIH 106 (440)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (440)
|+..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+..+. +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 45566777777777778888887777777652 334566777777777777777777777777766432 4455666666
Q ss_pred HHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHH------------HHHHHhcC
Q 039362 107 MYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSAL------------IDGYVKCG 174 (440)
Q Consensus 107 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l------------~~~~~~~~ 174 (440)
++...|++++|...|+++.+.++.. ..+...+..+ ...+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSE-------------------------QEEKEAESQLVKADEMQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcc-------------------------cChHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6666666666655555443211100 0133444444 57889999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 039362 175 DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFH 254 (440)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 254 (440)
++++|.+.++++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..+|...|++++|...|+
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998875 5577888899999999999999999999999876 7788899999999999999999999999
Q ss_pred hhhhcCCch-hhHH------------HHHHHHHhcCChHHHHHHHHHHHHcCCCccH----hhHHHHHHHHHcCCChHHH
Q 039362 255 GVEKHQSDV-LIWN------------AMIGGLAMHGFVKESLELFTEMQIVGITPDE----ITFLGLLSACAHGGLVMEA 317 (440)
Q Consensus 255 ~~~~~~~~~-~~~~------------~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a 317 (440)
++.+..|+. ..+. .+...+...|++++|...++++.+.. +.+. ..+..+...+...|++++|
T Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 998876653 3332 23667889999999999999998864 2222 2345577889999999999
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccH-hHHHHHHHHHH
Q 039362 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTA-SMLGSLLTGCM 376 (440)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~ 376 (440)
...++++.+.. +.+...+..+...+...|++++|.+.++++ ...|+. ..+..+..+..
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 99999999864 236778899999999999999999999998 677764 45555555443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=3.1e-21 Score=169.07 Aligned_cols=285 Identities=13% Similarity=0.031 Sum_probs=207.4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039362 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPE---RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204 (440)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (440)
+...+..+...+...|++++|.++|+++.+ .+...+..++.++...|++++|...++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 334455555556666666666666666543 234556666777777888888888888877653 3455667777777
Q ss_pred HHhcC-ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCChHHH
Q 039362 205 CAHLG-ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGFVKES 282 (440)
Q Consensus 205 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 282 (440)
+...| ++++|...++++.+.. +.+...+..+..++...|++++|...|+++.+..|+ ...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 77777 7888888888877765 556677778888888888888888888887766553 56666777788888888888
Q ss_pred HHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcC--------CCCCcchHHHHHHHHHhcCCHHHHHH
Q 039362 283 LELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG--------MVPKSEHYACMVDALSRAGQVTEAYE 354 (440)
Q Consensus 283 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~ 354 (440)
...++++.+.. +.+...+..+...+...|++++|...++++.+.. ......++..+...+...|++++|..
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888877654 4456677778888888888888888888777641 12235577788888888888888888
Q ss_pred HHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH-HhccCh
Q 039362 355 FICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY-AIFKRW 415 (440)
Q Consensus 355 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 415 (440)
.+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++ ...|+.
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 88877 3334 4567788888888888888888888888888888888888888877 445554
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=5.5e-22 Score=176.74 Aligned_cols=283 Identities=13% Similarity=0.023 Sum_probs=220.1
Q ss_pred hcCChHHHHH-HHhhCCC-----C--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 039362 141 KCGEMNMARQ-VFELMPE-----R--NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALD 212 (440)
Q Consensus 141 ~~~~~~~a~~-~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 212 (440)
..|++++|.. .|++... | +...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 6665443 1 34567778888888888888888888888764 456677888888888888888
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchh-hHHH---------------HHHHHHhc
Q 039362 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL-IWNA---------------MIGGLAMH 276 (440)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~---------------l~~~~~~~ 276 (440)
+|...++++.+.. +.+..++..++.+|...|++++|...|+++....|+.. .+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 8888888888776 66777888888888888899999888888877655322 2211 23334488
Q ss_pred CChHHHHHHHHHHHHcCCCc-cHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 039362 277 GFVKESLELFTEMQIVGITP-DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355 (440)
Q Consensus 277 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (440)
|++++|...++++.+..... +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998864211 47788899999999999999999999998864 23567888999999999999999999
Q ss_pred HhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhccChHHHHHHH
Q 039362 356 ICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH-----------DGRYVGLSNVYAIFKRWDEARTTR 422 (440)
Q Consensus 356 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~ 422 (440)
++++ ...| +...+..+...+...|++++|...++++.+..|.+ ..+|..++.+|...|++++|..++
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 9998 4444 56788999999999999999999999999988877 678999999999999999999988
Q ss_pred HHHH
Q 039362 423 EAME 426 (440)
Q Consensus 423 ~~~~ 426 (440)
++.+
T Consensus 354 ~~~l 357 (368)
T 1fch_A 354 ARDL 357 (368)
T ss_dssp TTCH
T ss_pred HHHH
Confidence 6443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=4.4e-21 Score=168.10 Aligned_cols=268 Identities=10% Similarity=0.008 Sum_probs=235.8
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHH
Q 039362 158 RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLI 237 (440)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 237 (440)
.+...+..++..+...|++++|.++++++.... +.+...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466778888999999999999999999998774 4455677778888899999999999999999876 67788999999
Q ss_pred HHHHhcC-CHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChH
Q 039362 238 DMYAKCG-AIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315 (440)
Q Consensus 238 ~~~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 315 (440)
..+...| ++++|...|+++.+..| +...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999999987766 57789999999999999999999999998874 444567777899999999999
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CC----------CccHhHHHHHHHHHHhcCChhHH
Q 039362 316 EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PL----------EPTASMLGSLLTGCMNHGKLDLA 384 (440)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~~a 384 (440)
+|...++++.+.. +.+...+..+...+...|++++|...++++ .. .....++..+...+...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998864 235678889999999999999999999887 11 23457889999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
...++++.+..|.++.++..++.++...|++++|.+.++++.+..
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999887654
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=1.5e-19 Score=167.13 Aligned_cols=376 Identities=14% Similarity=0.028 Sum_probs=303.9
Q ss_pred HHHhhhc-CCCChHHHHHHHHHHHc----cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhc----hhcHHHHHHHHH
Q 039362 17 CKVLSHL-SNPRIFYWNTVIRGYSK----SKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGR----LAKRELAVAVHA 87 (440)
Q Consensus 17 ~~~~~~~-~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 87 (440)
.+.++.. .+.++.++..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|.++|+
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 3444433 36688888888888888 899999999999998864 56678888888888 899999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHhhCCCCC-chhhHHHHHHHHHh----cCChHHHHHHHhhCCC-
Q 039362 88 QIAKTGYESDLFISNSLIHMYGS----CGDIVYAREVFDGMPTK-MSVSWNSMLDGYAK----CGEMNMARQVFELMPE- 157 (440)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~- 157 (440)
+..+.| ++..+..|...|.. .+++++|...|++..+. +...+..+...|.. .++.++|.+.|++..+
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 999875 56777788888888 78999999999887654 56678888888877 7899999999998765
Q ss_pred CchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCc
Q 039362 158 RNVVSWSALIDGYVK----CGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH----LGALDQGRMMLRYMIDKGLSLT 229 (440)
Q Consensus 158 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 229 (440)
.+...+..+...|.. .+++++|.+.|++..+.| +...+..+...+.. .+++++|...+++..+.+ +
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 254 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---N 254 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---C
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 567788888888888 899999999999998765 45667777777775 789999999999998765 3
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCccHhh
Q 039362 230 LPLQTSLIDMYAK----CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMH-----GFVKESLELFTEMQIVGITPDEIT 300 (440)
Q Consensus 230 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~ 300 (440)
...+..+...|.. .+++++|...|++..+. .+...+..+...|... +++++|+..|++..+.| +...
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a 330 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATA 330 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHH
Confidence 5567778888887 89999999999998753 3556777788888877 89999999999998875 3345
Q ss_pred HHHHHHHHHcCC---ChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHhcCCCCccHhHHHHHHH
Q 039362 301 FLGLLSACAHGG---LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSR----AGQVTEAYEFICQMPLEPTASMLGSLLT 373 (440)
Q Consensus 301 ~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~p~~~~~~~l~~ 373 (440)
+..+...+...| +.++|...|++..+.+ +...+..+...|.. .+++++|.+.|++.--..+...+..+..
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~ 407 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 666777776655 7899999999998864 56788888888988 8999999999998822335677788888
Q ss_pred HHHh----cCChhHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 039362 374 GCMN----HGKLDLAEIVGKKLVELQPD---HDGRYVGLSNVYAI 411 (440)
Q Consensus 374 ~~~~----~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 411 (440)
.|.. .+++++|...|+++.+.+|+ ++.....++..+..
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 8887 89999999999999999854 55566666555443
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=1.6e-19 Score=168.68 Aligned_cols=398 Identities=7% Similarity=0.016 Sum_probs=292.1
Q ss_pred CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 039362 25 NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSL 104 (440)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 104 (440)
+.|..+|..++. +.+.|++++|..+|+++.+. .+.+...|...+..+.+.|++++|..+|++++... |+...+...
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 557889999998 47889999999999999885 34456678999999999999999999999998864 477777766
Q ss_pred HHHH-HhcCCHHHHHH----HhhCCC-----C-CchhhHHHHHHHHHh---------cCChHHHHHHHhhCCC-Cch---
Q 039362 105 IHMY-GSCGDIVYARE----VFDGMP-----T-KMSVSWNSMLDGYAK---------CGEMNMARQVFELMPE-RNV--- 160 (440)
Q Consensus 105 ~~~~-~~~g~~~~a~~----~~~~~~-----~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~-~~~--- 160 (440)
+... ...|+.+.|.+ +|+... + .+...|...+....+ .|+++.|..+|++..+ |..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6533 34566666554 555432 1 345567777766554 6889999999998775 321
Q ss_pred hhHHHHHHHH-------------HhcCCHHHHHHHHHHH------HhcC---CCCCH--------HHHHHHHHHHHhc--
Q 039362 161 VSWSALIDGY-------------VKCGDYKEALVIFEEM------RDVG---SKANE--------VTLVSVLCACAHL-- 208 (440)
Q Consensus 161 ~~~~~l~~~~-------------~~~~~~~~a~~~~~~~------~~~~---~~~~~--------~~~~~l~~~~~~~-- 208 (440)
..|....... .+.+++..|..++... .+.. ++|+. ..+...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 2333222110 1345677777777653 2221 24431 3344333322221
Q ss_pred --CCh----HHHHHHHHHHHHcCCCCchhhHHHHHHHHHh-------cCCHH-------HHHHHHhhhhh-cCC-chhhH
Q 039362 209 --GAL----DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK-------CGAIK-------EALIVFHGVEK-HQS-DVLIW 266 (440)
Q Consensus 209 --~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~-~~~-~~~~~ 266 (440)
++. ..+..+|++.+... +.+...|..++..+.+ .|+++ +|..+|++..+ ..| +...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 232 37778899988875 6778889888888876 79987 99999999986 556 57789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCccH--hhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHH-H
Q 039362 267 NAMIGGLAMHGFVKESLELFTEMQIVGITPDE--ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDA-L 343 (440)
Q Consensus 267 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 343 (440)
..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|++..+.. +.+...|...+.. +
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHH
Confidence 99999999999999999999999985 4542 478888888888999999999999998853 1223333332222 3
Q ss_pred HhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc----hHHHHHHHHHhccChHH
Q 039362 344 SRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG----RYVGLSNVYAIFKRWDE 417 (440)
Q Consensus 344 ~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~ 417 (440)
...|+.++|..+|++. ...| +...|..++..+.+.|+.++|..+|++++...|.++. .|...+......|+.+.
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4689999999999987 4445 5688899999999999999999999999998876665 77788888888999999
Q ss_pred HHHHHHHHHhcCC
Q 039362 418 ARTTREAMETRGV 430 (440)
Q Consensus 418 A~~~~~~~~~~~~ 430 (440)
+..+.+++.+...
T Consensus 482 ~~~~~~r~~~~~p 494 (530)
T 2ooe_A 482 ILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHCc
Confidence 9999999877643
No 20
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=8.9e-21 Score=174.85 Aligned_cols=284 Identities=11% Similarity=0.011 Sum_probs=156.5
Q ss_pred ChHHHHHHHhhCCC--C-chhhHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHH
Q 039362 144 EMNMARQVFELMPE--R-NVVSWSALIDG---YVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH----LGALDQ 213 (440)
Q Consensus 144 ~~~~a~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 213 (440)
++++|+..|++..+ | ++..+..+..+ +...++.++|++.+++..+.+ +.+...+..+...+.. .+++++
T Consensus 153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 45555555555443 2 22333333322 233455556666666655543 2233344333333322 345566
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHh-----------------
Q 039362 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMIGGLAM----------------- 275 (440)
Q Consensus 214 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~----------------- 275 (440)
|.+.+++..+.. +.+..++..+...|...|++++|...++++.+..|+ ..++..+...|..
T Consensus 232 a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~ 310 (472)
T 4g1t_A 232 GEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310 (472)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred HHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 666666666554 455556666666666666666666666666655553 3344444433321
Q ss_pred --cCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCc--chHHHHHH-HHHhcCCHH
Q 039362 276 --HGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS--EHYACMVD-ALSRAGQVT 350 (440)
Q Consensus 276 --~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~~~~~ 350 (440)
.+.++.|...+++..+.. +.+..++..+...+...|++++|+..|+++.+....+.. ..+..+.. .+...|+++
T Consensus 311 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (472)
T 4g1t_A 311 KLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCED 389 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHH
Confidence 223567777888777654 445567888888888999999999999988875433221 12222322 234678899
Q ss_pred HHHHHHhcC-CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 351 EAYEFICQM-PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 351 ~a~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
+|+..+++. .+.|+...... ....+..++++.++.+|.++.+|..++.+|...|++++|.+.|++.++.+
T Consensus 390 ~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 390 KAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999988887 66665543222 23455677888888999999999999999999999999999999999988
Q ss_pred CccCCCCCCC
Q 039362 430 VKKYPGWSFV 439 (440)
Q Consensus 430 ~~~~~~~~~~ 439 (440)
.......+|+
T Consensus 461 ~~~p~a~~~~ 470 (472)
T 4g1t_A 461 SLIPSASSWN 470 (472)
T ss_dssp ----------
T ss_pred CCCCcHhhcC
Confidence 7766677775
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=5.6e-19 Score=163.29 Aligned_cols=365 Identities=14% Similarity=0.055 Sum_probs=301.4
Q ss_pred hhHHHHHHHHHHcCCCCCcchHHHHHHHhhc----hhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHH
Q 039362 45 NKSISLFVKMLRAGVSPDHLTYPFLAKASGR----LAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGS----CGDIVY 116 (440)
Q Consensus 45 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 116 (440)
..++..++...+. .+...+..+...|.. .+++++|...|+...+.| ++..+..|...|.. .+++++
T Consensus 24 ~~~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 3446666666554 366777888888877 899999999999999875 56778889999998 899999
Q ss_pred HHHHhhCCCCC-chhhHHHHHHHHHh----cCChHHHHHHHhhCCC-CchhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 039362 117 AREVFDGMPTK-MSVSWNSMLDGYAK----CGEMNMARQVFELMPE-RNVVSWSALIDGYVK----CGDYKEALVIFEEM 186 (440)
Q Consensus 117 a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 186 (440)
|...|++..+. +...+..|...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|.+.|++.
T Consensus 98 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 98 AVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99999987654 56678888888888 8899999999998765 466788888888887 78999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHhhhhh
Q 039362 187 RDVGSKANEVTLVSVLCACAH----LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK----CGAIKEALIVFHGVEK 258 (440)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 258 (440)
.+.| +...+..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|..+|++..+
T Consensus 178 ~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 178 AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 8875 56777788888877 899999999999998865 45677788888886 8899999999999875
Q ss_pred cCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcC-----CChHHHHHHHHHHhhcCC
Q 039362 259 HQSDVLIWNAMIGGLAM----HGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG-----GLVMEAWYFFKSLGKRGM 329 (440)
Q Consensus 259 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~ 329 (440)
. .+...+..+...|.. .+++++|+..|++..+.| +...+..+...+... +++++|...|++..+.+
T Consensus 252 ~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~- 326 (490)
T 2xm6_A 252 Q-GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG- 326 (490)
T ss_dssp T-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-
T ss_pred C-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-
Confidence 3 355667777777877 899999999999998765 344666777777776 89999999999999865
Q ss_pred CCCcchHHHHHHHHHhcC---CHHHHHHHHhcCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCchH
Q 039362 330 VPKSEHYACMVDALSRAG---QVTEAYEFICQMPLEPTASMLGSLLTGCMN----HGKLDLAEIVGKKLVELQPDHDGRY 402 (440)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 402 (440)
+...+..+...|...| ++++|.++|++.-...++..+..+...|.. .+++++|...|+++.+.+ ++..+
T Consensus 327 --~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~ 402 (490)
T 2xm6_A 327 --DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQ 402 (490)
T ss_dssp --CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred --CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHH
Confidence 4567777888888766 789999999988223567788889988888 899999999999999875 46688
Q ss_pred HHHHHHHHh----ccChHHHHHHHHHHHhcCC
Q 039362 403 VGLSNVYAI----FKRWDEARTTREAMETRGV 430 (440)
Q Consensus 403 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 430 (440)
..++.+|.. .+++++|...|++..+.+.
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999999998 8999999999999998763
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=2.8e-21 Score=171.90 Aligned_cols=263 Identities=13% Similarity=0.019 Sum_probs=214.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 039362 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238 (440)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (440)
+...+..+...+.+.|++++|...|+++.... +.+...+..+..++...|++++|...++++.+.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44568888888889999999999999888764 5567788888889999999999999999988876 667788888999
Q ss_pred HHHhcCCHHHHHHHHhhhhhcCCc-hhh----------HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-ccHhhHHHHHH
Q 039362 239 MYAKCGAIKEALIVFHGVEKHQSD-VLI----------WNAMIGGLAMHGFVKESLELFTEMQIVGIT-PDEITFLGLLS 306 (440)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~----------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~ 306 (440)
+|...|++++|...|+++.+..|+ ... +..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998876553 222 234577888999999999999999887421 15778889999
Q ss_pred HHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHH
Q 039362 307 ACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLA 384 (440)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 384 (440)
.+...|++++|...|+++.+.. +.+..++..+...|...|++++|.+.++++ ...| +..++..+..++...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998864 235778999999999999999999999988 4455 467889999999999999999
Q ss_pred HHHHHHHHhcCCC------------CCchHHHHHHHHHhccChHHHHHHHHH
Q 039362 385 EIVGKKLVELQPD------------HDGRYVGLSNVYAIFKRWDEARTTREA 424 (440)
Q Consensus 385 ~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 424 (440)
...++++++..|. +..+|..++.++...|+.+.|.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998766 356789999999999999998887754
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.88 E-value=3.3e-20 Score=161.73 Aligned_cols=373 Identities=13% Similarity=0.130 Sum_probs=174.1
Q ss_pred CChhhHHHHhhhcCCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHH
Q 039362 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90 (440)
Q Consensus 11 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 90 (440)
|++++|.+++++++.|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|++.++..+
T Consensus 17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999997664 9999999999999999999999653 677899999999999999999999888777
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHH
Q 039362 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGY 170 (440)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 170 (440)
+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..+...|...|.+++|...|..+ ..|..++.++
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L 158 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTL 158 (449)
T ss_dssp ----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHH
Confidence 64 44678899999999999999999988864 67779999999999999999999999988 4899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 039362 171 VKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250 (440)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 250 (440)
.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +..++.....++..|.+.|++++|.
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHH
Confidence 9999999999999988 2678999999999999999999555443 2344444567899999999999999
Q ss_pred HHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCc------cHhhHHHHHHHHHcCCChHHHHHHHH
Q 039362 251 IVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQI-VGITP------DEITFLGLLSACAHGGLVMEAWYFFK 322 (440)
Q Consensus 251 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~ 322 (440)
.+++...+..+ ....|+.+.-.|++- ++++.++.++.... -+++| +...|.-+...|.+.++++.|...
T Consensus 228 ~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t-- 304 (449)
T 1b89_A 228 TMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT-- 304 (449)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH--
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH--
Confidence 99999886644 567788887777765 45555555544322 22333 345678888888888999888653
Q ss_pred HHhhc-CC-------------CCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHH
Q 039362 323 SLGKR-GM-------------VPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVG 388 (440)
Q Consensus 323 ~~~~~-~~-------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 388 (440)
|.+. .. ..+...|...+..|... .+..--.++.-+.-+.|+ ...+..+.+.|+..-+..++
T Consensus 305 -m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~-~p~~l~~ll~~l~~~ld~---~r~v~~~~~~~~l~l~~~yl 379 (449)
T 1b89_A 305 -MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-KPLLLNDLLMVLSPRLDH---TRAVNYFSKVKQLPLVKPYL 379 (449)
T ss_dssp -HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGGCCH---HHHHHHHHHTTCTTTTHHHH
T ss_pred -HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhccCc---HHHHHHHHHcCCcHHHHHHH
Confidence 3332 01 12445555555555521 111111111111101111 12233344555555555555
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhccChHHHHHHH
Q 039362 389 KKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422 (440)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 422 (440)
+.+.. .++..+-.++-..|....+++.-+.-+
T Consensus 380 ~~v~~--~n~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 380 RSVQN--HNNKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp HHHHT--TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHH--hhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44432 233445556777777777776555443
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=2e-20 Score=166.62 Aligned_cols=279 Identities=13% Similarity=0.033 Sum_probs=213.6
Q ss_pred hcCCHHHHHH-HhhCCCC---C----chhhHHHHHHHHHhcCChHHHHHHHhhCCC---CchhhHHHHHHHHHhcCCHHH
Q 039362 110 SCGDIVYARE-VFDGMPT---K----MSVSWNSMLDGYAKCGEMNMARQVFELMPE---RNVVSWSALIDGYVKCGDYKE 178 (440)
Q Consensus 110 ~~g~~~~a~~-~~~~~~~---~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 178 (440)
..|++++|.. .|++... . +...+..+...+.+.|++++|...|+++.+ .+..++..+..++...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 4477788887 7775542 1 234577788888888888888888888764 356678888888999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHH----------------HHHHHHHh
Q 039362 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQT----------------SLIDMYAK 242 (440)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~ 242 (440)
|...++++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+...+. .+...+ .
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 193 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-S 193 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHH-H
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-h
Confidence 999999888775 5567788888888899999999999999888765 33333322 233334 8
Q ss_pred cCCHHHHHHHHhhhhhcCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHH
Q 039362 243 CGAIKEALIVFHGVEKHQSD---VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319 (440)
Q Consensus 243 ~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 319 (440)
.|++++|...|+++.+..|+ ..++..+...+...|++++|+..++++.... +.+..++..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999998877665 6778888999999999999999999988764 4456788889999999999999999
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc------------HhHHHHHHHHHHhcCChhHHHH
Q 039362 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPT------------ASMLGSLLTGCMNHGKLDLAEI 386 (440)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~------------~~~~~~l~~~~~~~g~~~~a~~ 386 (440)
.++++.+.. +.+...+..+...|.+.|++++|...++++ ...|+ ..+|..+..++...|++++|..
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999988864 235677888999999999999999999887 22222 5788899999999999999998
Q ss_pred HHHHHHh
Q 039362 387 VGKKLVE 393 (440)
Q Consensus 387 ~~~~~~~ 393 (440)
++++.++
T Consensus 352 ~~~~~l~ 358 (368)
T 1fch_A 352 ADARDLS 358 (368)
T ss_dssp HHTTCHH
T ss_pred hHHHHHH
Confidence 8875543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=3.1e-20 Score=162.45 Aligned_cols=265 Identities=12% Similarity=-0.011 Sum_probs=212.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 039362 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238 (440)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (440)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456677778888888888888888887764 4466677777888888888888888888888775 566777888888
Q ss_pred HHHhcCCHHHHHHHHhhhhhcCCch-hhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCccHhhHH
Q 039362 239 MYAKCGAIKEALIVFHGVEKHQSDV-LIWNAM--------------IG-GLAMHGFVKESLELFTEMQIVGITPDEITFL 302 (440)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 302 (440)
+|...|++++|...++++.+..|+. ..+..+ .. .+...|++++|...++++.+.. +.+...+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 8888888888888888887765543 333333 22 3677889999999999998774 44677888
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCC
Q 039362 303 GLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGK 380 (440)
Q Consensus 303 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 380 (440)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 89999999999999999999998864 235677888999999999999999999987 3344 56788899999999999
Q ss_pred hhHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 381 LDLAEIVGKKLVELQPD------------HDGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 381 ~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
+++|...++++.+..|. ++.++..++.++...|++++|..++++.++
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999988 677899999999999999999999875543
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=4.7e-20 Score=164.03 Aligned_cols=259 Identities=11% Similarity=0.016 Sum_probs=206.5
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039362 128 MSVSWNSMLDGYAKCGEMNMARQVFELMPE---RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA 204 (440)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (440)
+...+..+...+.+.|++++|+..|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345688888888899999999999988764 457788899999999999999999999988764 4567788889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchh----------hHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc---hhhHHHHHH
Q 039362 205 CAHLGALDQGRMMLRYMIDKGLSLTLP----------LQTSLIDMYAKCGAIKEALIVFHGVEKHQSD---VLIWNAMIG 271 (440)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~ 271 (440)
+...|++++|...++++.+.. +.+.. .+..+..++...|++++|...|+++.+..|+ ...+..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999988764 22222 2334578889999999999999999877664 678888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 039362 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTE 351 (440)
Q Consensus 272 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (440)
.+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+...|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988764 5567789999999999999999999999998864 2246778889999999999999
Q ss_pred HHHHHhcC-CCCc-------------cHhHHHHHHHHHHhcCChhHHHHHHHH
Q 039362 352 AYEFICQM-PLEP-------------TASMLGSLLTGCMNHGKLDLAEIVGKK 390 (440)
Q Consensus 352 a~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 390 (440)
|...++++ ...| +..+|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999887 2222 257788999999999999988877765
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=8.3e-19 Score=161.65 Aligned_cols=367 Identities=11% Similarity=-0.068 Sum_probs=246.2
Q ss_pred ChHHHHHHHHHHHccCChhhHHHHHHHHHHc-----C--CCC-CcchHHHHHHHhhchhcHHHHHHHHHHHHHcC-----
Q 039362 27 RIFYWNTVIRGYSKSKNPNKSISLFVKMLRA-----G--VSP-DHLTYPFLAKASGRLAKRELAVAVHAQIAKTG----- 93 (440)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 93 (440)
....||.|...+...|++++|++.|++..+. + ..| ...+|..+..+|...|++++|...++++.+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4568999999999999999999999987542 1 122 34578899999999999999999999887531
Q ss_pred -C-CCcHHHHHHHHHHHHhc--CCHHHHHHHhhCCCC--C-chhhHHHHHHH---HHhcCChHHHHHHHhhCCC---Cch
Q 039362 94 -Y-ESDLFISNSLIHMYGSC--GDIVYAREVFDGMPT--K-MSVSWNSMLDG---YAKCGEMNMARQVFELMPE---RNV 160 (440)
Q Consensus 94 -~-~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~---~~~ 160 (440)
. .....++..+..++... +++++|...|++..+ | ++..+..+..+ +...++.++|++.+++..+ .+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1 12345666666666554 469999999998763 3 44455555444 4556788889988887654 345
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH
Q 039362 161 VSWSALIDGYVK----CGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236 (440)
Q Consensus 161 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 236 (440)
..+..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...++++.+.. |.+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 556665555544 467889999999988764 5567788889999999999999999999999876 6667777777
Q ss_pred HHHHHhc-------------------CCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 039362 237 IDMYAKC-------------------GAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITP 296 (440)
Q Consensus 237 ~~~~~~~-------------------g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 296 (440)
..+|... +.++.|...+++..+..| +...+..+...+...|++++|++.|++..+....|
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 7766432 346678888888877666 57788999999999999999999999998865433
Q ss_pred cHh--hHHHHHH-HHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHH
Q 039362 297 DEI--TFLGLLS-ACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSL 371 (440)
Q Consensus 297 ~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l 371 (440)
... .+..+.. .....|+.++|+..|.+..+. .|+....... ...+.+++++. ...| +..+|..+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 322 2222222 235789999999999999884 4554332222 22333444443 2234 56889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHH
Q 039362 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLS 406 (440)
Q Consensus 372 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 406 (440)
...+...|++++|++.|+++++.+|.+|.+...++
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHCC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 99999999999999999999999998887766554
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=8.9e-18 Score=156.86 Aligned_cols=383 Identities=15% Similarity=0.067 Sum_probs=281.3
Q ss_pred cCChhhHHHHhhhcC---CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHh-hchhcHHHHHH-
Q 039362 10 LGNIDYSCKVLSHLS---NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKAS-GRLAKRELAVA- 84 (440)
Q Consensus 10 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~- 84 (440)
.|++++|..+|+++. |.+...|..++..+.+.|++++|..+|+++... .|+...|...+... ...|+.+.|.+
T Consensus 25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~ 102 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEK 102 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHH
Confidence 399999999999875 556778999999999999999999999999885 47777777766533 34466655554
Q ss_pred ---HHHHHHHc-CCC-CcHHHHHHHHHHHHh---------cCCHHHHHHHhhCCCC-Cch---hhHHHHHHHH-------
Q 039362 85 ---VHAQIAKT-GYE-SDLFISNSLIHMYGS---------CGDIVYAREVFDGMPT-KMS---VSWNSMLDGY------- 139 (440)
Q Consensus 85 ---~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~---~~~~~l~~~~------- 139 (440)
+|+...+. |.. ++...|...+....+ .|+++.|..+|++... |.. ..|.......
T Consensus 103 ~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~ 182 (530)
T 2ooe_A 103 MAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHL 182 (530)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhH
Confidence 77777654 433 356677777776654 6899999999988765 221 2333222210
Q ss_pred ------HhcCChHHHHHHHhh-------CC------CCc--------hhhHHHHHHHHHhc----CCH----HHHHHHHH
Q 039362 140 ------AKCGEMNMARQVFEL-------MP------ERN--------VVSWSALIDGYVKC----GDY----KEALVIFE 184 (440)
Q Consensus 140 ------~~~~~~~~a~~~~~~-------~~------~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~ 184 (440)
.+.++++.|..++.. +. .|+ ...|...+...... ++. +++..+|+
T Consensus 183 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~ 262 (530)
T 2ooe_A 183 AKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYE 262 (530)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHH
Confidence 134567777776654 11 111 23455554333222 222 47788999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 039362 185 EMRDVGSKANEVTLVSVLCACAH-------LGALD-------QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL 250 (440)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 250 (440)
+..... +.+...+...+..+.+ .|+++ +|..++++..+.-.|.+...+..++..+.+.|++++|.
T Consensus 263 ~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~ 341 (530)
T 2ooe_A 263 QCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 341 (530)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHH
Confidence 987763 4567777777777765 78987 89999999987333667889999999999999999999
Q ss_pred HHHhhhhhcCCch--hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHH-HHcCCChHHHHHHHHHHhhc
Q 039362 251 IVFHGVEKHQSDV--LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSA-CAHGGLVMEAWYFFKSLGKR 327 (440)
Q Consensus 251 ~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~ 327 (440)
.+|+++.+..|+. ..|..++..+.+.|++++|.++|++..+.. +.+...+...... +...|+.++|..+|++..+.
T Consensus 342 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 342 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 9999999887753 478999999999999999999999998753 2222333322222 33589999999999999886
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-C---CCcc--HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 039362 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQM-P---LEPT--ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397 (440)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 397 (440)
. +.+...|..++..+.+.|+.++|..+|++. . ..|+ ...|...+......|+.+.+..+.+++.+..|.
T Consensus 421 ~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 421 Y-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp H-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred C-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 3 235678889999999999999999999997 2 2333 347888888888999999999999999998874
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=4.9e-20 Score=160.70 Aligned_cols=350 Identities=10% Similarity=0.012 Sum_probs=167.3
Q ss_pred ccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 039362 40 KSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYARE 119 (440)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 119 (440)
+.|+.++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678999999999883 3358999999999999999999999652 577789999999999999999999
Q ss_pred HhhCCCC--CchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 039362 120 VFDGMPT--KMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVT 197 (440)
Q Consensus 120 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (440)
.++...+ +++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 8877764 3557788999999999999999988863 77789999999999999999999999976 47
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcC
Q 039362 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHG 277 (440)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (440)
|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..|+. ...++..|.+.|
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~--l~~lv~~Yek~G 221 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADE--LEELINYYQDRG 221 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHH--HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhh--HHHHHHHHHHCC
Confidence 889999999999999999999988 368899999999999999999988777654 24433 446889999999
Q ss_pred ChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc-CCCC------CcchHHHHHHHHHhcCCHH
Q 039362 278 FVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR-GMVP------KSEHYACMVDALSRAGQVT 350 (440)
Q Consensus 278 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~ 350 (440)
++++|..+++...... +.....|+.+.-++++- ++++..+.++..... +++| +...|..++..|...++++
T Consensus 222 ~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 222 YFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp CHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 9999999999987554 44456777777777653 344444444433332 3433 5678999999999999999
Q ss_pred HHHHHHhcC-CC-------------CccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChH
Q 039362 351 EAYEFICQM-PL-------------EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWD 416 (440)
Q Consensus 351 ~a~~~~~~~-~~-------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 416 (440)
.|...+-+- .. ..+..+|...+..|. +....++.-+...+. |. .-....+..+.+.|...
T Consensus 300 ~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~--~~--ld~~r~v~~~~~~~~l~ 373 (449)
T 1b89_A 300 NAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLS--PR--LDHTRAVNYFSKVKQLP 373 (449)
T ss_dssp HHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHG--GG--CCHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHH--hc--cCcHHHHHHHHHcCCcH
Confidence 998876555 22 123445555555554 222222322222221 11 01234455556666666
Q ss_pred HHHHHHHHHHhcCC
Q 039362 417 EARTTREAMETRGV 430 (440)
Q Consensus 417 ~A~~~~~~~~~~~~ 430 (440)
-+..+++.+...+.
T Consensus 374 l~~~yl~~v~~~n~ 387 (449)
T 1b89_A 374 LVKPYLRSVQNHNN 387 (449)
T ss_dssp TTHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhH
Confidence 66666666655543
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=1.7e-17 Score=161.32 Aligned_cols=363 Identities=13% Similarity=0.112 Sum_probs=238.7
Q ss_pred CChhhHHHHhhhcC-CC-----ChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHH
Q 039362 11 GNIDYSCKVLSHLS-NP-----RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVA 84 (440)
Q Consensus 11 g~~~~A~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 84 (440)
|.+.+|.++++++. .| +....+.++....+. +..+..+..++.... ....+...+...|.+++|..
T Consensus 999 glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~lglyEEAf~ 1070 (1630)
T 1xi4_A 999 DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISNELFEEAFA 1070 (1630)
T ss_pred CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhCCCHHHHHH
Confidence 66666666666554 11 223444455544444 334444444433311 12335566667777777777
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHH
Q 039362 85 VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWS 164 (440)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 164 (440)
+|++.. ......+.++. ..+++++|.++.+++. ++.+|..+..++...|++++|++.|.+. .|...|.
T Consensus 1071 IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~ 1138 (1630)
T 1xi4_A 1071 IFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYM 1138 (1630)
T ss_pred HHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHH
Confidence 777741 11222222322 5677777777777663 3556778888888888888888888665 5666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 039362 165 ALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244 (440)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 244 (440)
.++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+. + .++...+..+...|...|
T Consensus 1139 eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1139 EVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcC
Confidence 78888888888888888887766553 33333334777777777777544332 1 344556667888888888
Q ss_pred CHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHH
Q 039362 245 AIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSL 324 (440)
Q Consensus 245 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 324 (440)
++++|..+|..+ ..|..+...+.+.|++++|++.+++. .+..+|..+..+|...|++..|......+
T Consensus 1210 ~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I 1276 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI 1276 (1630)
T ss_pred CHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 888888888775 37778888888888888888888765 34567777777888888877777655432
Q ss_pred hhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccH-hHHHHHHHHHHh--cCChhHHHHHHHHHHhcCC----
Q 039362 325 GKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTA-SMLGSLLTGCMN--HGKLDLAEIVGKKLVELQP---- 396 (440)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~-~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~---- 396 (440)
..+...+..++..|.+.|.+++|+.+++.. ++.|.. ..|..+...+.+ -++..++.++|..-....|
T Consensus 1277 -----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~ 1351 (1630)
T 1xi4_A 1277 -----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA 1351 (1630)
T ss_pred -----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHH
Confidence 235566778888888999999999999776 555533 556666666654 4456666666665554444
Q ss_pred -CCCchHHHHHHHHHhccChHHHHH
Q 039362 397 -DHDGRYVGLSNVYAIFKRWDEART 420 (440)
Q Consensus 397 -~~~~~~~~l~~~~~~~g~~~~A~~ 420 (440)
.+...|..+...|.+.|+++.|..
T Consensus 1352 ~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1352 AEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHH
Confidence 456678888888999999998874
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=4.6e-18 Score=145.21 Aligned_cols=270 Identities=13% Similarity=0.028 Sum_probs=204.9
Q ss_pred HHHhcCChHHHHHHHhhCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 039362 138 GYAKCGEMNMARQVFELMPERN----VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213 (440)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (440)
-....|++..|+..++.....+ ......+.++|...|+++.|+..++. . -+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 3445677777777777655422 23445567888889999888876654 1 35667778888888888889999
Q ss_pred HHHHHHHHHHcCC-CCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039362 214 GRMMLRYMIDKGL-SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIV 292 (440)
Q Consensus 214 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 292 (440)
|.+.++++...+. |.+...+..+..++...|++++|+..+++ ..+...+..++..+.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 9999998887763 44566777788889999999999999987 456778888889999999999999999999876
Q ss_pred CCCccHhhH---HHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhH
Q 039362 293 GITPDEITF---LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASM 367 (440)
Q Consensus 293 ~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~ 367 (440)
. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.++++ ...| +..+
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4 543211 123344445689999999999999873 457778889999999999999999999997 4455 5678
Q ss_pred HHHHHHHHHhcCChhH-HHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHH
Q 039362 368 LGSLLTGCMNHGKLDL-AEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422 (440)
Q Consensus 368 ~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 422 (440)
+..++..+...|+.++ +.++++++++.+|.++.+. ....+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 8899999999999876 6789999999999997543 3445555555555433
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1.3e-16 Score=155.24 Aligned_cols=349 Identities=15% Similarity=0.117 Sum_probs=270.9
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHcCC--CCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 039362 32 NTVIRGYSKSKNPNKSISLFVKMLRAGV--SPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYG 109 (440)
Q Consensus 32 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (440)
...++.|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +..+..++.+..-.. + ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 4456778889999999999999874321 11233445566555555 556666666655421 1 334777888
Q ss_pred hcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 039362 110 SCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV 189 (440)
Q Consensus 110 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (440)
..|.+++|..+|++... .....+.+ +...+++++|.++.+++. +..+|..+..++...|++++|++.|.+.
T Consensus 1061 ~lglyEEAf~IYkKa~~-~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-NTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-HHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 89999999999999752 22222223 227789999999999884 5778889999999999999999999663
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHH
Q 039362 190 GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAM 269 (440)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 269 (440)
-|...|..++.++.+.|++++|.+.+....+.. +++.....++.+|++.+++++...+. . .++...|..+
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~--~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---N--GPNNAHIQQV 1201 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---h--CCCHHHHHHH
Confidence 466788889999999999999999999887765 33334446999999999988644443 2 5666777789
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCH
Q 039362 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQV 349 (440)
Q Consensus 270 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (440)
...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..+|...|++
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHH
Confidence 99999999999999999985 37899999999999999999999877 2557898899999999999
Q ss_pred HHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--cChHHHHHHHHH
Q 039362 350 TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF--KRWDEARTTREA 424 (440)
Q Consensus 350 ~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 424 (440)
..|...... +..++..+..++..|.+.|.+++|+.+++..+.++|.+...|+-++.+|.+- ++..++.++|.+
T Consensus 1267 ~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1267 RLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999988775 3445666778999999999999999999999999999988998888888764 566777777753
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=2.4e-18 Score=150.46 Aligned_cols=153 Identities=12% Similarity=0.023 Sum_probs=107.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHH
Q 039362 205 CAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESL 283 (440)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 283 (440)
+...|++++|...++++.+.. +.+...+..+..+|...|++++|...++++.+..| +...+..+...+...|++++|.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 556677777777777777665 45666777777777777777777777777766655 4566777777777788888888
Q ss_pred HHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCC-----------CcchHHHHHHHHHhcCCHHHH
Q 039362 284 ELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP-----------KSEHYACMVDALSRAGQVTEA 352 (440)
Q Consensus 284 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a 352 (440)
..++++.+.. +.+..++..+...+...|++++|...++++.+..... +...+..+..++.+.|++++|
T Consensus 227 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 227 DAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 8887777653 3445667777777777888888888887776653111 245566677777777777777
Q ss_pred HHHHhcC
Q 039362 353 YEFICQM 359 (440)
Q Consensus 353 ~~~~~~~ 359 (440)
..++++.
T Consensus 306 ~~~~~~~ 312 (327)
T 3cv0_A 306 ELTYAQN 312 (327)
T ss_dssp HHHTTCC
T ss_pred HHHHHHH
Confidence 7777654
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=1.1e-17 Score=142.76 Aligned_cols=224 Identities=10% Similarity=0.055 Sum_probs=121.0
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHH
Q 039362 135 MLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA-NEVTLVSVLCACAHLGALDQ 213 (440)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 213 (440)
+.++|...|+++.|+..++....|+..++..+...+...++.++|++.++++...+..| +...+..+...+...|++++
T Consensus 40 l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~ 119 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDA 119 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHH
Confidence 34444445555555444444323444455555556666666666666666665544333 33334444455566666666
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhH---HHHHHHHHhcCChHHHHHHHHHHH
Q 039362 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIW---NAMIGGLAMHGFVKESLELFTEMQ 290 (440)
Q Consensus 214 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~ 290 (440)
|...+++ +.+...+..++.+|.+.|++++|...|+++.+..|+.... ...+..+...|++++|..+|+++.
T Consensus 120 Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l 193 (291)
T 3mkr_A 120 ALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193 (291)
T ss_dssp HHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 6666554 3445555666666666666666666666665555543211 112222333466666666666666
Q ss_pred HcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHH-HHHHHhcC-CCCccHh
Q 039362 291 IVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTE-AYEFICQM-PLEPTAS 366 (440)
Q Consensus 291 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~-~~~p~~~ 366 (440)
+.. +.+...++.+..++.+.|++++|...|+++.+.. +-+..++..++..+...|+.++ +.++++++ .+.|+..
T Consensus 194 ~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 194 DKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 552 4455556666666666666666666666666543 1244555666666666666654 34555555 3444443
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=1.1e-17 Score=136.64 Aligned_cols=198 Identities=17% Similarity=0.040 Sum_probs=138.3
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHH
Q 039362 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLL 305 (440)
Q Consensus 227 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 305 (440)
|++...+..+...+...|++++|...|+++.+..| +...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 44555666666666666777777777766665555 35566666666677777777777777766653 33445666666
Q ss_pred HHHHcC-----------CChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccHhHHHHHHH
Q 039362 306 SACAHG-----------GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTASMLGSLLT 373 (440)
Q Consensus 306 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~l~~ 373 (440)
..+... |++++|+..+++..+... -+...+..+...+...|++++|+..|++. .+..+...+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 666666 889999999998888641 24567788888899999999999999887 22267788889999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHH
Q 039362 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426 (440)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 426 (440)
++...|++++|+..++++++.+|.++..+..++.++...|++++|.+.+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999987654
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.3e-17 Score=138.89 Aligned_cols=225 Identities=13% Similarity=0.057 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--Cc----hhhHH
Q 039362 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS--LT----LPLQT 234 (440)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 234 (440)
..+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...++.+.+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666666666666666666554 45556666666666666666666666665543211 01 34555
Q ss_pred HHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCCh
Q 039362 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314 (440)
Q Consensus 235 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 314 (440)
.+..+|...|++++|...|+++....|+. ..+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 55555555566666665555555444442 22333444555555555554432 22233444444445555555
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039362 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVEL 394 (440)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 394 (440)
++|...++++.+.. +.+..++..++..+...|++++|+..++++++.
T Consensus 156 ~~A~~~~~~a~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA---------------------------------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---------------------------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 55555555554432 112344445555555555555555555555555
Q ss_pred CCCCCchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 395 QPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
.|.++..+..++.++...|++++|.+.+++..+.
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.7e-17 Score=137.65 Aligned_cols=189 Identities=11% Similarity=0.081 Sum_probs=121.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--Ccc----HhhHHHHHH
Q 039362 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI--TPD----EITFLGLLS 306 (440)
Q Consensus 233 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~~~l~~ 306 (440)
+..+...+...|++++|...|+++.+...+...+..+...+...|++++|...++++.+... .|+ ..++..+..
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 33444444444444444444444433223344444444444555555555555544443210 011 244555555
Q ss_pred HHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHH
Q 039362 307 ACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLA 384 (440)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 384 (440)
.+...|++++|...++++.+.. |+ ...+...|++++|...++++ ...| +...+..++..+...|++++|
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 5566666666666666655532 22 13455566677777777776 3344 456788889999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
...++++++..|.++.++..++.++...|++++|.+.+++..+...
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 9999999999999999999999999999999999999999988653
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.77 E-value=9.2e-17 Score=136.62 Aligned_cols=243 Identities=11% Similarity=-0.101 Sum_probs=188.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 039362 172 KCGDYKEALVIFEEMRDVGSK---ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKE 248 (440)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 248 (440)
..|++++|+..++++.+.... .+...+..+..++...|++++|...++++.+.. +.+..++..++.+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457788888888888775321 134567778888888899999999999888876 6677888889999999999999
Q ss_pred HHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 039362 249 ALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327 (440)
Q Consensus 249 A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 327 (440)
|...|+++.+..| +...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999999887766 5778888889999999999999999998876 344444444445556678999999999887775
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc-----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 039362 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPT-----ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR 401 (440)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 401 (440)
. +++... ..++..+...++.++|.+.+++. ...|+ ...+..++..+...|++++|...++++++.+|.+..
T Consensus 174 ~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 250 (275)
T 1xnf_A 174 S-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV- 250 (275)
T ss_dssp S-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH-
T ss_pred C-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH-
Confidence 3 233333 44777788888889999998887 44442 577888999999999999999999999999987754
Q ss_pred HHHHHHHHHhccChHHHHHHH
Q 039362 402 YVGLSNVYAIFKRWDEARTTR 422 (440)
Q Consensus 402 ~~~l~~~~~~~g~~~~A~~~~ 422 (440)
....++...|++++|.+.+
T Consensus 251 --~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 --EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHhhHHHH
Confidence 3466788899999998876
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.77 E-value=6.6e-17 Score=137.32 Aligned_cols=248 Identities=12% Similarity=0.002 Sum_probs=148.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--hhhHHHHHHHH
Q 039362 163 WSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT--LPLQTSLIDMY 240 (440)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 240 (440)
+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+....++ ...+..+..+|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445556666666666666666665543 22333555566666666666666666666665221111 12356666666
Q ss_pred HhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHH
Q 039362 241 AKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319 (440)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 319 (440)
...|++++|+..|+++.+..| +...+..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665544 34566666666666667777766666665542 2334445555523333347777777
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHhcCC---HHHHHHHHhcC----CCCcc------HhHHHHHHHHHHhcCChhHHHH
Q 039362 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQ---VTEAYEFICQM----PLEPT------ASMLGSLLTGCMNHGKLDLAEI 386 (440)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~----~~~p~------~~~~~~l~~~~~~~g~~~~a~~ 386 (440)
.|+++.+.. +.+...+..+...+...|+ +++|...++++ ...|+ ...+..+...+...|++++|..
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777766643 1134455556666666666 55666666655 11233 2567778888999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcc
Q 039362 387 VGKKLVELQPDHDGRYVGLSNVYAIFK 413 (440)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~g 413 (440)
.++++++.+|.++.++..+.......+
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999999887777766554443
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.76 E-value=3.7e-17 Score=148.78 Aligned_cols=377 Identities=10% Similarity=-0.030 Sum_probs=192.2
Q ss_pred HHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcH---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 039362 34 VIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKR---ELAVAVHAQIAKTGYESDLFISNSLIHMYGS 110 (440)
Q Consensus 34 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 110 (440)
+...+.+.|++++|+++|++..+.| +...+..+...+...|++ ++|..+|+...+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 3444555566666666666655543 233333444444445555 5666666555533 23333444443333
Q ss_pred cC-----CHHHHHHHhhCCCCC-chhhHHHHHHHHHhcCChHH---HHHHHhhCCC-CchhhHHHHHHHHHhcCCHHHHH
Q 039362 111 CG-----DIVYAREVFDGMPTK-MSVSWNSMLDGYAKCGEMNM---ARQVFELMPE-RNVVSWSALIDGYVKCGDYKEAL 180 (440)
Q Consensus 111 ~g-----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 180 (440)
.+ ++++|...|++..++ +...+..|...|...+..++ +.+.+....+ .+...+..+...|...+.++++.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 33 455566555554432 23345555555544443322 2223322222 24555666666666666443333
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc----CCHHHHHHHH
Q 039362 181 VIFEEMRDVGSKANEVTLVSVLCACAHLG---ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC----GAIKEALIVF 253 (440)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~ 253 (440)
.....+.+.-...+...+..+...+...| +.++|...|++..+.+ +++...+..+...|... +++++|...|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 33222211111122225566666666677 7777777777777766 55555555566666544 5777777777
Q ss_pred hhhhhcCCchhhHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCC-----ChHHHHHHHHHHh
Q 039362 254 HGVEKHQSDVLIWNAMIGG-L--AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG-----LVMEAWYFFKSLG 325 (440)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~ 325 (440)
++.. ..+...+..+... + ...+++++|+..|++..+.| +...+..+...|. .| ++++|...|++..
T Consensus 241 ~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 241 EKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 7766 3345556666555 3 35677777777777777655 3445555555555 34 7777777777766
Q ss_pred hcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHhcCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCC
Q 039362 326 KRGMVPKSEHYACMVDALSR----AGQVTEAYEFICQMPLEPTASMLGSLLTGCMN----HGKLDLAEIVGKKLVELQPD 397 (440)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 397 (440)
.| +......|...|.. ..++++|..+|++.-...+......|...|.. ..+.++|...|+++.+.+++
T Consensus 315 -~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 -GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp -TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred -CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 32 44555666666655 33777777777776222344445556555543 45777888888888777754
Q ss_pred CCchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 398 HDGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 398 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
........+......++..+|..+.++..+.
T Consensus 391 ~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 391 EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4332222222223345566676666665543
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.75 E-value=3.8e-16 Score=142.17 Aligned_cols=346 Identities=11% Similarity=-0.023 Sum_probs=238.5
Q ss_pred HHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH---HHHHHHhhCCCCCchhhHHHHHHHHHhcC-
Q 039362 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI---VYAREVFDGMPTKMSVSWNSMLDGYAKCG- 143 (440)
Q Consensus 68 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~- 143 (440)
.+...+.+.|++++|.++|+...+.|. ...+..|...|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 356677889999999999999998763 33455566677778888 99999999988777777888887666555
Q ss_pred ----ChHHHHHHHhhCCCC-chhhHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 039362 144 ----EMNMARQVFELMPER-NVVSWSALIDGYVKCGDYK---EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGR 215 (440)
Q Consensus 144 ----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 215 (440)
+.++|...|++..++ +...+..+...|...+..+ ++.+.+......|. ......+...|...+.++++.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH
Confidence 788999999988763 4567888888887766533 45555655555552 345556677777777555555
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcC---CHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhc----CChHHHHHHHH
Q 039362 216 MMLRYMIDKGLSLTLPLQTSLIDMYAKCG---AIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMH----GFVKESLELFT 287 (440)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~----~~~~~a~~~~~ 287 (440)
.....+.+.-...++..+..|..+|...| +.++|+..|++..+..+ +...+..+...|... +++++|+..|+
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 44333333322344448888999999999 99999999999887655 444446677777554 79999999999
Q ss_pred HHHHcCCCccHhhHHHHHHH-H--HcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC-----CHHHHHHHHhcC
Q 039362 288 EMQIVGITPDEITFLGLLSA-C--AHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG-----QVTEAYEFICQM 359 (440)
Q Consensus 288 ~m~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~ 359 (440)
+.. .| +...+..+... + ...+++++|...|++..+.| +...+..|...|. .| ++++|.++|++.
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 987 43 34455555555 3 46899999999999999876 5667777888777 55 999999999999
Q ss_pred CCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHh----ccChHHHHHHHHHHHhcCC
Q 039362 360 PLEPTASMLGSLLTGCMN----HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI----FKRWDEARTTREAMETRGV 430 (440)
Q Consensus 360 ~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 430 (440)
- ..++.....|...|.. ..++++|...|+++.+.+ ++.....++.+|.. ..+.++|...+++..+.|.
T Consensus 314 a-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 314 V-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp T-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred h-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8 6677788888877765 449999999999998865 45678889998875 4589999999999988775
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=3.7e-16 Score=137.90 Aligned_cols=249 Identities=8% Similarity=-0.004 Sum_probs=192.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 039362 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA-LDQGRMMLRYMIDKGLSLTLPLQTSLID 238 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (440)
...|..+...+...|++++|+..+++.+... +-+...|..+..++...|+ +++|+..++++++.+ +.+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567777788888888888888888887764 4456677778888888886 888888888888876 667788888888
Q ss_pred HHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHc-CCChHH
Q 039362 239 MYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH-GGLVME 316 (440)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~ 316 (440)
++...|++++|+..|+++....| +...|..+..++...|++++|+..++++.+.. +-+...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 88888888888888888887766 56788888888888888888888888888764 4456778888888877 555466
Q ss_pred H-----HHHHHHHhhcCCCCCcchHHHHHHHHHhcC--CHHHHHHHHhcCCCCcc-HhHHHHHHHHHHhcC--------C
Q 039362 317 A-----WYFFKSLGKRGMVPKSEHYACMVDALSRAG--QVTEAYEFICQMPLEPT-ASMLGSLLTGCMNHG--------K 380 (440)
Q Consensus 317 a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~p~-~~~~~~l~~~~~~~g--------~ 380 (440)
| +..++++++.. +-+...|..+...+...| ++++|++.++++...|+ ...+..++..+.+.| +
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 6 47788877754 124567777788888877 57888888887744453 466777888887764 2
Q ss_pred -hhHHHHHHHHH-HhcCCCCCchHHHHHHHHHhc
Q 039362 381 -LDLAEIVGKKL-VELQPDHDGRYVGLSNVYAIF 412 (440)
Q Consensus 381 -~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 412 (440)
.++|+.+++++ .+.+|.....|..++..+...
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 58999999999 899999888888887776543
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=6.3e-16 Score=126.18 Aligned_cols=196 Identities=15% Similarity=0.044 Sum_probs=107.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 039362 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238 (440)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (440)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34455556666666666666666666665543 3345555566666666666666666666666654 445556666666
Q ss_pred HHHhc-----------CCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHH
Q 039362 239 MYAKC-----------GAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306 (440)
Q Consensus 239 ~~~~~-----------g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 306 (440)
++... |++++|+..|++..+..| +...+..+...+...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 666666666666655555 34455556666666666666666666665554 44555555666
Q ss_pred HHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC
Q 039362 307 ACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (440)
++...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666665542 113444555555555666666665555543
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=8.5e-16 Score=130.44 Aligned_cols=232 Identities=9% Similarity=-0.085 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchh----hHHHHHH
Q 039362 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL----IWNAMIG 271 (440)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~l~~ 271 (440)
..+......+...|++++|...++++.+.. +.+...+..+..+|...|++++|+..++++....++.. .|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566778889999999999999999876 56677899999999999999999999999987433333 3888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 039362 272 GLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTE 351 (440)
Q Consensus 272 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (440)
.+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998864 4456789999999999999999999999998863 2345667777734445569999
Q ss_pred HHHHHhcC-CCCcc-HhHHHHHHHHHHhcCC---hhHHHHHHHHHHhcC---CCCC-----chHHHHHHHHHhccChHHH
Q 039362 352 AYEFICQM-PLEPT-ASMLGSLLTGCMNHGK---LDLAEIVGKKLVELQ---PDHD-----GRYVGLSNVYAIFKRWDEA 418 (440)
Q Consensus 352 a~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---~~~~-----~~~~~l~~~~~~~g~~~~A 418 (440)
|.+.++++ ...|+ ...+..+...+...|+ +++|...++++.+.. |... .++..++..|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998 44554 5777778888888888 888999999999875 3321 4788899999999999999
Q ss_pred HHHHHHHHhcCC
Q 039362 419 RTTREAMETRGV 430 (440)
Q Consensus 419 ~~~~~~~~~~~~ 430 (440)
.+.++++.+..+
T Consensus 241 ~~~~~~al~~~p 252 (272)
T 3u4t_A 241 DAAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHhcCc
Confidence 999999988654
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=8.5e-16 Score=135.58 Aligned_cols=231 Identities=11% Similarity=0.021 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC-HHHHHHHHhhhhhcCC-chhhHHHHHHH
Q 039362 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA-IKEALIVFHGVEKHQS-DVLIWNAMIGG 272 (440)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 272 (440)
...+..+..++...|++++|+..++++++.+ +.+..+|..+..++...|+ +++|+..|+++....| +...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3456777788889999999999999999987 7788999999999999997 9999999999998877 57889999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh-cCCHHH
Q 039362 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSR-AGQVTE 351 (440)
Q Consensus 273 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 351 (440)
+...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++... -+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999999875 55677899999999999999999999999999752 267789999999999 666577
Q ss_pred H-----HHHHhcC-CCCc-cHhHHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc---------
Q 039362 352 A-----YEFICQM-PLEP-TASMLGSLLTGCMNHG--KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK--------- 413 (440)
Q Consensus 352 a-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------- 413 (440)
| ++.+++. .+.| +...|..+...+...| ++++|++.++++ +.+|+++.++..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4777776 5566 4578888888888888 689999999998 888999999999999999875
Q ss_pred ChHHHHHHHHHH-HhcC
Q 039362 414 RWDEARTTREAM-ETRG 429 (440)
Q Consensus 414 ~~~~A~~~~~~~-~~~~ 429 (440)
..++|.++++++ .+..
T Consensus 333 ~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 333 ILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 358999999998 5543
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.72 E-value=4e-16 Score=132.63 Aligned_cols=242 Identities=7% Similarity=-0.139 Sum_probs=183.8
Q ss_pred hcCChHHHHHHHhhCCCC-------chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 039362 141 KCGEMNMARQVFELMPER-------NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213 (440)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (440)
..|++++|+..|+++.+. +..++..+...+...|++++|...|+++.... +.+...+..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777776541 45678888889999999999999999988774 4467788888889999999999
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039362 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG 293 (440)
Q Consensus 214 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 293 (440)
|...++++.+.. +.+...+..+..+|...|++++|...|+++.+..|+.......+..+...|++++|...+++.....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999999998876 5677888899999999999999999999998877766655555566677799999999998877653
Q ss_pred CCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCC--C-CcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccHhHHH
Q 039362 294 ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV--P-KSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTASMLG 369 (440)
Q Consensus 294 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~ 369 (440)
+++...+ .++..+...++.++|...+..+...... | +...+..+...|...|++++|...++++ ...|+.. .
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~ 250 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF--V 250 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC--H
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH--H
Confidence 4444444 4666777788888999999888764211 1 1467788899999999999999999988 6666442 2
Q ss_pred HHHHHHHhcCChhHHHHHH
Q 039362 370 SLLTGCMNHGKLDLAEIVG 388 (440)
Q Consensus 370 ~l~~~~~~~g~~~~a~~~~ 388 (440)
....++...|++++|++.+
T Consensus 251 ~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 3355667788888887776
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=7.3e-15 Score=124.74 Aligned_cols=226 Identities=15% Similarity=-0.035 Sum_probs=147.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhhHH
Q 039362 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAH----LGALDQGRMMLRYMIDKGLSLTLPLQT 234 (440)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (440)
++.++..+...+...|++++|...|++..+. -+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4566677777777788888888888877763 234566666777777 777888888877777665 556666
Q ss_pred HHHHHHHh----cCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCccHhhHHHHHH
Q 039362 235 SLIDMYAK----CGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAM----HGFVKESLELFTEMQIVGITPDEITFLGLLS 306 (440)
Q Consensus 235 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 306 (440)
.+...|.. .+++++|+..|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc-CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 77777777 77777777777776653 255666667777776 777777777777776654 3344555555
Q ss_pred HHHc----CCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHhcC-CCCccHhHHHHHHHHHHh
Q 039362 307 ACAH----GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSR----AGQVTEAYEFICQM-PLEPTASMLGSLLTGCMN 377 (440)
Q Consensus 307 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~ 377 (440)
.+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.+++. ...| ...+..+...+..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHc
Confidence 6655 667777777777766643 33455556666666 66666666666655 2222 4445555555555
Q ss_pred ----cCChhHHHHHHHHHHhcCCCC
Q 039362 378 ----HGKLDLAEIVGKKLVELQPDH 398 (440)
Q Consensus 378 ----~g~~~~a~~~~~~~~~~~~~~ 398 (440)
.+++++|...++++.+.+|++
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHH
Confidence 666666666666666665543
No 48
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=157.50 Aligned_cols=124 Identities=14% Similarity=0.133 Sum_probs=86.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhhhh-----cCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHH
Q 039362 229 TLPLQTSLIDMYAKCGAIKEALIVFHGVEK-----HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLG 303 (440)
Q Consensus 229 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 303 (440)
...+|++++.+|++.|++++|..+|..|.+ ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345667777777777777777777765542 267777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCCCh-HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 039362 304 LLSACAHGGLV-MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352 (440)
Q Consensus 304 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 352 (440)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.+-++..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 77777777764 56777777777777777777777776655554333333
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=3.9e-16 Score=130.07 Aligned_cols=209 Identities=12% Similarity=0.081 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHh
Q 039362 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAM 275 (440)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 275 (440)
.+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...|+++....| +...+..+...+..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 33444444455555555555555554433 33444555555555555555555555555554433 34455555555666
Q ss_pred cCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 039362 276 HGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355 (440)
Q Consensus 276 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (440)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.
T Consensus 104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666655543 3344455555666666666666666666665542 12344555566666666666666666
Q ss_pred HhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHH
Q 039362 356 ICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNV 408 (440)
Q Consensus 356 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 408 (440)
++++ ...| +..++..+...+...|++++|...++++.+..|.++..+..+...
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 6665 2222 345667777777777888888888888887777776665555443
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=1.4e-14 Score=122.98 Aligned_cols=225 Identities=9% Similarity=-0.072 Sum_probs=168.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHhhhhhcCCchhhHHHH
Q 039362 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK----CGAIKEALIVFHGVEKHQSDVLIWNAM 269 (440)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l 269 (440)
+..++..+...+...|++++|...|++..+ +.+...+..+...|.. .+++++|...|++..+.. +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHH
Confidence 445666677777788888888888888877 3345667777788888 888888888888877543 66777777
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHc----CCChHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 039362 270 IGGLAM----HGFVKESLELFTEMQIVGITPDEITFLGLLSACAH----GGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341 (440)
Q Consensus 270 ~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (440)
...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 778887 888888888888887764 55667777777777 788888888888887754 4556667777
Q ss_pred HHHh----cCCHHHHHHHHhcCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHh--
Q 039362 342 ALSR----AGQVTEAYEFICQMPLEPTASMLGSLLTGCMN----HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI-- 411 (440)
Q Consensus 342 ~~~~----~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 411 (440)
.|.. .+++++|...+++.--..+...+..+...+.. .+++++|+..++++.+.+| +..+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 7777 78888888888876112345666777777777 8888888888888888765 4567778888887
Q ss_pred --ccChHHHHHHHHHHHhcCC
Q 039362 412 --FKRWDEARTTREAMETRGV 430 (440)
Q Consensus 412 --~g~~~~A~~~~~~~~~~~~ 430 (440)
.+++++|.+.+++..+.+.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 7888888888888877654
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=1.9e-15 Score=126.75 Aligned_cols=202 Identities=15% Similarity=0.040 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHH
Q 039362 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLA 274 (440)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 274 (440)
..+..+...+...|++++|...++++.+.. +.+...+..+..+|...|++++|...|+++.+..| +...+..+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 344455555555556666666655555543 33445555555555555555555555555544433 3444555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCc-cHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 039362 275 MHGFVKESLELFTEMQIVGITP-DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAY 353 (440)
Q Consensus 275 ~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 353 (440)
..|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555554421122 23344444445555555555555555554432 112333444444444444444444
Q ss_pred HHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039362 354 EFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 354 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (440)
..++++ ...| +...+..+...+...|++++|..+++++.+..|.++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 444443 2222 223334444444444444444444444444444443
No 52
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=5.5e-17 Score=153.10 Aligned_cols=118 Identities=15% Similarity=0.083 Sum_probs=91.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH
Q 039362 160 VVSWSALIDGYVKCGDYKEALVIFEEMR---DVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSL 236 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 236 (440)
..+|+++|++|++.|++++|.++|.+|. ..|+.||..||+++|.+|++.|++++|.++|++|.+.|+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~---------- 196 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL---------- 196 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------
Confidence 3478888888888888888888887764 346788888888888888888888888888888888877
Q ss_pred HHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCccHhhHHHHHHHHHc
Q 039362 237 IDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFV-KESLELFTEMQIVGITPDEITFLGLLSACAH 310 (440)
Q Consensus 237 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 310 (440)
.||..+|+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus 197 -----------------------~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 197 -----------------------TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp -----------------------CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred -----------------------CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 55666666777777777764 6778888888888888888888888765544
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=5.6e-16 Score=140.01 Aligned_cols=264 Identities=12% Similarity=0.006 Sum_probs=152.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCchhhHH
Q 039362 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANE----VTLVSVLCACAHLGALDQGRMMLRYMIDK----G-LSLTLPLQT 234 (440)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~ 234 (440)
..+...+...|++++|...|+++.+.+ +.+. ..+..+..++...|++++|...+++..+. + .+.....+.
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 344455555666666666666655542 1121 24455555556666666666666555432 1 122234455
Q ss_pred HHHHHHHhcCCHHHHHHHHhhhhhc------CC-chhhHHHHHHHHHhcCC-----------------hHHHHHHHHHHH
Q 039362 235 SLIDMYAKCGAIKEALIVFHGVEKH------QS-DVLIWNAMIGGLAMHGF-----------------VKESLELFTEMQ 290 (440)
Q Consensus 235 ~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~ 290 (440)
.+..+|...|++++|...++++... .+ ....+..+...|...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 5666666666666666666655433 11 23355556666666666 666666666543
Q ss_pred Hc----CCCc-cHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCC-CC----cchHHHHHHHHHhcCCHHHHHHHHhcC-
Q 039362 291 IV----GITP-DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PK----SEHYACMVDALSRAGQVTEAYEFICQM- 359 (440)
Q Consensus 291 ~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~- 359 (440)
+. +..+ ...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 31 1111 1235556666666777777777777766553100 01 125566667777777777777777665
Q ss_pred CCCc-------cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CchHHHHHHHHHhccChHHHHHHHHHHH
Q 039362 360 PLEP-------TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH------DGRYVGLSNVYAIFKRWDEARTTREAME 426 (440)
Q Consensus 360 ~~~p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 426 (440)
...| ...++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1111 13556667777777888888888888777754332 2266777777888888888888877776
Q ss_pred hc
Q 039362 427 TR 428 (440)
Q Consensus 427 ~~ 428 (440)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.70 E-value=4.9e-15 Score=124.19 Aligned_cols=199 Identities=10% Similarity=-0.040 Sum_probs=142.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHH
Q 039362 230 LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSAC 308 (440)
Q Consensus 230 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 308 (440)
...+..+...+...|++++|...|+++.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45566677777777888888887777766555 45667777777777788888888887777654 33556677777777
Q ss_pred HcCCChHHHHHHHHHHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHH
Q 039362 309 AHGGLVMEAWYFFKSLGKRGMVP-KSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAE 385 (440)
Q Consensus 309 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 385 (440)
...|++++|..+++++.+.+..| +...+..+...+...|++++|.+.++++ ...| +...+..++..+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 77788888888877777632223 3455666777777778888887777776 3233 4566677777777778888888
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 386 IVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
..++++.+..|.+...+..++..+...|++++|.++++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 88888777777777777777777777788888888777776654
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=4.9e-15 Score=121.77 Aligned_cols=198 Identities=13% Similarity=-0.032 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHH
Q 039362 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLA 274 (440)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 274 (440)
..+..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...++++....| +...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344445555555555555555555555543 33444555555555555555555555555544433 3344444555555
Q ss_pred hc-CChHHHHHHHHHHHHcCCCcc-HhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 039362 275 MH-GFVKESLELFTEMQIVGITPD-EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352 (440)
Q Consensus 275 ~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 352 (440)
.. |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. |
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~--------------------- 144 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--P--------------------- 144 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T---------------------
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C---------------------
Confidence 55 555555555555544111121 2344444444455555555555555544432 1
Q ss_pred HHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQP-DHDGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 353 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
.+...+..++..+...|++++|...++++.+..| .++..+..++..+...|+.++|..+++.+.+
T Consensus 145 ----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 145 ----------QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp ----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 1233444444455555555555555555555555 4444444444444555555555555554443
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.70 E-value=8.3e-16 Score=128.09 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=160.3
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHH
Q 039362 228 LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306 (440)
Q Consensus 228 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 306 (440)
.....+..+...+...|++++|...|+++.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4456677888899999999999999999987766 57788889999999999999999999998874 456778888999
Q ss_pred HHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHH
Q 039362 307 ACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLA 384 (440)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 384 (440)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ ...| +...+..++..+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998864 336677888999999999999999999998 3333 567888899999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
+..++++.+..|.++.++..++.+|...|++++|.+.++++.+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 9999999999999999999999999999999999999999988654
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.69 E-value=1e-15 Score=134.12 Aligned_cols=266 Identities=15% Similarity=0.059 Sum_probs=185.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCchhhH
Q 039362 163 WSALIDGYVKCGDYKEALVIFEEMRDVGSKAN----EVTLVSVLCACAHLGALDQGRMMLRYMIDK----GL-SLTLPLQ 233 (440)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 233 (440)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +. +....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 4445566777788888888887776653 222 245666777777778888888777776433 11 1224566
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhhhhcC---Cc----hhhHHHHHHHHHhcCC--------------------hHHHHHHH
Q 039362 234 TSLIDMYAKCGAIKEALIVFHGVEKHQ---SD----VLIWNAMIGGLAMHGF--------------------VKESLELF 286 (440)
Q Consensus 234 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 286 (440)
..+...|...|++++|...+++..+.. ++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 777778888888888888887765431 12 2366777777788888 88888887
Q ss_pred HHHHHc----CCCc-cHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCC-CCC----cchHHHHHHHHHhcCCHHHHHHHH
Q 039362 287 TEMQIV----GITP-DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGM-VPK----SEHYACMVDALSRAGQVTEAYEFI 356 (440)
Q Consensus 287 ~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 356 (440)
++.... +..| ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 775432 1111 134567777788888889998888888765410 011 236777888888999999998888
Q ss_pred hcC-CCCc-------cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CchHHHHHHHHHhccChHHHHHHH
Q 039362 357 CQM-PLEP-------TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH------DGRYVGLSNVYAIFKRWDEARTTR 422 (440)
Q Consensus 357 ~~~-~~~p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 422 (440)
++. .+.| ...++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 876 1111 14567788888999999999999999998865433 236788999999999999999999
Q ss_pred HHHHhcC
Q 039362 423 EAMETRG 429 (440)
Q Consensus 423 ~~~~~~~ 429 (440)
++..+..
T Consensus 327 ~~a~~~~ 333 (338)
T 3ro2_A 327 EKHLEIS 333 (338)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 9988753
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.69 E-value=1.4e-15 Score=137.04 Aligned_cols=291 Identities=13% Similarity=0.101 Sum_probs=177.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCC--C-c----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHH
Q 039362 130 VSWNSMLDGYAKCGEMNMARQVFELMPE--R-N----VVSWSALIDGYVKCGDYKEALVIFEEMRDV----GSKA-NEVT 197 (440)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 197 (440)
..+......+...|++++|...|+++.+ | + ...+..+...+...|++++|...+++.... +..| ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3455566677777888888877777653 2 2 245667777777778888887777765432 1111 1345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C----chhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 039362 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLS-L----TLPLQTSLIDMYAKCGA--------------------IKEALIV 252 (440)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~--------------------~~~A~~~ 252 (440)
+..+...+...|++++|...+++..+.... + ...++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 566666777777777777777776543210 1 13356667777777777 7777777
Q ss_pred Hhhhhhc---CC----chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-Ccc----HhhHHHHHHHHHcCCChHHHHHH
Q 039362 253 FHGVEKH---QS----DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI-TPD----EITFLGLLSACAHGGLVMEAWYF 320 (440)
Q Consensus 253 ~~~~~~~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~ 320 (440)
+.+.... .+ ....+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7665432 11 133566667777777777777777777654310 111 12566666677777777777777
Q ss_pred HHHHhhcCC-CCC----cchHHHHHHHHHhcCCHHHHHHHHhcC-CC------Cc-cHhHHHHHHHHHHhcCChhHHHHH
Q 039362 321 FKSLGKRGM-VPK----SEHYACMVDALSRAGQVTEAYEFICQM-PL------EP-TASMLGSLLTGCMNHGKLDLAEIV 387 (440)
Q Consensus 321 ~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~------~p-~~~~~~~l~~~~~~~g~~~~a~~~ 387 (440)
+++..+... .++ ..++..+...|...|++++|.+.+++. .+ .+ ...++..+...+...|++++|...
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777665310 011 335566677777777777777777665 11 11 134566666777777777777777
Q ss_pred HHHHHhcCCCCCc------hHHHHHHHHHhccChHHHHH
Q 039362 388 GKKLVELQPDHDG------RYVGLSNVYAIFKRWDEART 420 (440)
Q Consensus 388 ~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~ 420 (440)
++++.+..+.... ++..++.++...|+...+..
T Consensus 330 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 368 (406)
T 3sf4_A 330 AEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHH
Confidence 7777777666642 34555566666665554433
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=1.3e-14 Score=119.22 Aligned_cols=198 Identities=15% Similarity=0.076 Sum_probs=156.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 039362 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238 (440)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (440)
+...+..+...+...|++++|.+.++++.... +.+...+..+..++...|++++|...++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 46678889999999999999999999998874 4567788889999999999999999999999876 667888999999
Q ss_pred HHHhc-CCHHHHHHHHhhhhh--cCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCCh
Q 039362 239 MYAKC-GAIKEALIVFHGVEK--HQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLV 314 (440)
Q Consensus 239 ~~~~~-g~~~~A~~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 314 (440)
++... |++++|...++++.+ ..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999987 334 35778889999999999999999999998764 44566777888888888888
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC
Q 039362 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (440)
++|...++++.+.....+...+..+...+...|+.++|..+++.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 888888888776431123333444444444444444444444443
No 60
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.65 E-value=7.6e-13 Score=124.52 Aligned_cols=405 Identities=8% Similarity=-0.005 Sum_probs=279.5
Q ss_pred CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhc---HHHHHHHHHHHHHcCC-CCcHHH
Q 039362 25 NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK---RELAVAVHAQIAKTGY-ESDLFI 100 (440)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~ 100 (440)
+.|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.++ ++.+..+|++.+...+ +|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 568889999999999999999999999999986 45566778888888888888 9999999999988642 378888
Q ss_pred HHHHHHHHHhcCCH--------HHHHHHhhCCC------CC-chhhHHHHHHHHH---------hcCChHHHHHHHhhCC
Q 039362 101 SNSLIHMYGSCGDI--------VYAREVFDGMP------TK-MSVSWNSMLDGYA---------KCGEMNMARQVFELMP 156 (440)
Q Consensus 101 ~~~l~~~~~~~g~~--------~~a~~~~~~~~------~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 156 (440)
|...+....+.++. +...++|+... ++ +...|...+.... ..++++.+.++|+++.
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88887766665543 33446666422 22 3456777766543 2345788999999887
Q ss_pred C-Cc---hhhHH---HHHHHH----------HhcCCHHHHHHHHHHHHh--cCC----C-----------C-----CH--
Q 039362 157 E-RN---VVSWS---ALIDGY----------VKCGDYKEALVIFEEMRD--VGS----K-----------A-----NE-- 195 (440)
Q Consensus 157 ~-~~---~~~~~---~l~~~~----------~~~~~~~~a~~~~~~~~~--~~~----~-----------~-----~~-- 195 (440)
. |. ..+|. .+.... -...+++.|...+.++.. .++ + | +.
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 5 31 12222 221111 011234445555554321 111 1 1 01
Q ss_pred -HHHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH-HHHhhhhhcCC-chhh
Q 039362 196 -VTLVSVLCACAHLG-------ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEAL-IVFHGVEKHQS-DVLI 265 (440)
Q Consensus 196 -~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~-~~~~ 265 (440)
..|...+.---..+ ..+.+..+|++.+... +....+|...+..+...|+.++|. .+|++.....| +...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 22333332222211 1234567788888765 678888998999899999999996 99999887766 4556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCcc------------HhhHHHHHHHHHcCCChHHHHHHHHHH
Q 039362 266 WNAMIGGLAMHGFVKESLELFTEMQIVG---------ITPD------------EITFLGLLSACAHGGLVMEAWYFFKSL 324 (440)
Q Consensus 266 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 324 (440)
|-..+....+.|++++|.++|+.+.... -.|+ ...|...+....+.|+.+.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7778888889999999999999987641 0131 235777777777889999999999999
Q ss_pred hhcCCCCCcchHHHHHHHHHhc-CCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---C
Q 039362 325 GKRGMVPKSEHYACMVDALSRA-GQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD---H 398 (440)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~ 398 (440)
.+....+....|...+..-.+. ++.+.|.++|+.. ...| +...|...+......|+.+.|..+|++++...|+ .
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 8751112334454444434444 4589999999987 3233 4566678888888899999999999999998874 3
Q ss_pred CchHHHHHHHHHhccChHHHHHHHHHHHhcCCc
Q 039362 399 DGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431 (440)
Q Consensus 399 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 431 (440)
...|..++..-.+.|+.+.+.++.+++.+..+.
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 346888888888999999999999999887643
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.65 E-value=2.7e-15 Score=137.46 Aligned_cols=210 Identities=10% Similarity=0.016 Sum_probs=152.6
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH-HHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCChHHHHHHHHH
Q 039362 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAI-KEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGFVKESLELFTE 288 (440)
Q Consensus 211 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 288 (440)
++++...++...... +.+...+..+..+|...|++ ++|+..|+++.+..|+ ...|..+...|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444555444332 34556666666666666666 6666666666655553 55666777777777777777777777
Q ss_pred HHHcCCCccHhhHHHHHHHHHcC---------CChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc--------CCHHH
Q 039362 289 MQIVGITPDEITFLGLLSACAHG---------GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA--------GQVTE 351 (440)
Q Consensus 289 m~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~ 351 (440)
..+. .|+...+..+...+... |++++|+..++++.+.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 6654 35556666667777776 77778888877777753 22456677777777777 78888
Q ss_pred HHHHHhcC-CCCc----cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHH
Q 039362 352 AYEFICQM-PLEP----TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREA 424 (440)
Q Consensus 352 a~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 424 (440)
|++.|++. .+.| +...|..+..++...|++++|...|+++.+.+|.++..+..++.++...|++++|.+.+++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888887 4455 5678889999999999999999999999999999999999999999999999999875543
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=4.1e-15 Score=134.02 Aligned_cols=273 Identities=13% Similarity=0.039 Sum_probs=127.7
Q ss_pred ChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCc-----chHHHHHHHhhchhcHHHHHHHHHHHHHc----CCC-C
Q 039362 27 RIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH-----LTYPFLAKASGRLAKRELAVAVHAQIAKT----GYE-S 96 (440)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~ 96 (440)
....+......+...|++++|+..|+++.+.+ |+. ..+..+...+...|++++|...++++.+. +.. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34455566666677777777777777766642 322 34556666666667777777666665432 111 1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CchhhHHHHHHHHHhcC
Q 039362 97 DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE--RNVVSWSALIDGYVKCG 174 (440)
Q Consensus 97 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~ 174 (440)
...++..+...+...|++++|...+++..+. ...... ....++..+...|...|
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------------~~~~~~~~~~~~~~~~l~~~~~~~g 141 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDI------------------------SRELNDKVGEARALYNLGNVYHAKG 141 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------HHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------------HHhcccccchHHHHHHHHHHHHHcC
Confidence 1234444555555555555555544433210 000000 01234555555555555
Q ss_pred C--------------------HHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C
Q 039362 175 D--------------------YKEALVIFEEMRDV----GSKA-NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLS-L 228 (440)
Q Consensus 175 ~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 228 (440)
+ +++|...+++.... +..| ...++..+...+...|++++|...+++..+.... +
T Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 5 55555555544321 1011 1223444555555555555555555554432100 0
Q ss_pred ----chhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC---c----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC----
Q 039362 229 ----TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS---D----VLIWNAMIGGLAMHGFVKESLELFTEMQIVG---- 293 (440)
Q Consensus 229 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---- 293 (440)
...++..+..+|...|++++|...+++.....+ + ..++..+...+...|++++|...+++..+..
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 112444455555555555555555555443211 0 2334444455555555555555555443221
Q ss_pred CCcc-HhhHHHHHHHHHcCCChHHHHHHHHHHh
Q 039362 294 ITPD-EITFLGLLSACAHGGLVMEAWYFFKSLG 325 (440)
Q Consensus 294 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 325 (440)
..+. ..++..+...+...|++++|...+++..
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0000 2233444444444455555554444443
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.64 E-value=1.3e-14 Score=129.68 Aligned_cols=195 Identities=9% Similarity=-0.005 Sum_probs=88.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhhhhc---CC-----chhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-cH
Q 039362 232 LQTSLIDMYAKCGAIKEALIVFHGVEKH---QS-----DVLIWNAMIGGLAMHGFVKESLELFTEMQIV----GITP-DE 298 (440)
Q Consensus 232 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~ 298 (440)
++..+..+|...|++++|...+.+..+. .+ ...+++.+...|...|++++|...+++..+. +-.+ ..
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 3444444444555555554444444322 01 1123444445555555555555555544322 0000 01
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHhhc----CC-CCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CC-----Cc-cHh
Q 039362 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKR----GM-VPKSEHYACMVDALSRAGQVTEAYEFICQM-PL-----EP-TAS 366 (440)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-----~p-~~~ 366 (440)
.++..+...+...|++++|...+++..+. +. +....++..+...|.+.|++++|.+.+++. .+ .| ...
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 23444555555555555555555554442 11 112333445555555555555555555544 10 11 112
Q ss_pred HHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 367 MLGSLLTGCMNHGK---LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 367 ~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
.+..+...+...|+ .++|+.++++. ...|.....+..++..|...|++++|.+.+++..+
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23444455555555 44455554443 11122223455566666666666666666666554
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.63 E-value=4.4e-14 Score=126.24 Aligned_cols=231 Identities=8% Similarity=-0.022 Sum_probs=174.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCchhhH
Q 039362 165 ALIDGYVKCGDYKEALVIFEEMRDV----GSKA-NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL------SLTLPLQ 233 (440)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~ 233 (440)
.....+...|++++|...+++.... +-.+ ...++..+..++...|+++.|...+++..+... +....++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3556677888888888888887653 1111 235677788888888999998888888765421 1123567
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhhhhcCC---c----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CccHhhH
Q 039362 234 TSLIDMYAKCGAIKEALIVFHGVEKHQS---D----VLIWNAMIGGLAMHGFVKESLELFTEMQIV----GI-TPDEITF 301 (440)
Q Consensus 234 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~ 301 (440)
..+..+|...|++++|...|++..+..+ + ..++..+...|...|++++|...+++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 7888899999999999999988775422 1 247788889999999999999999988762 32 3345678
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhhc----CCCCCcchHHHHHHHHHhcCC---HHHHHHHHhcCCCCccH-hHHHHHHH
Q 039362 302 LGLLSACAHGGLVMEAWYFFKSLGKR----GMVPKSEHYACMVDALSRAGQ---VTEAYEFICQMPLEPTA-SMLGSLLT 373 (440)
Q Consensus 302 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~p~~-~~~~~l~~ 373 (440)
..+...+.+.|++++|...+++..+. +-+.....+..+...|...|+ +++|+.++++.+..|+. ..+..+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88899999999999999999988764 111112235667888888998 89999999999655544 56778899
Q ss_pred HHHhcCChhHHHHHHHHHHhcC
Q 039362 374 GCMNHGKLDLAEIVGKKLVELQ 395 (440)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~~ 395 (440)
.|...|++++|...++++.+..
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=3.9e-14 Score=112.44 Aligned_cols=163 Identities=16% Similarity=0.067 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 039362 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS 344 (440)
Q Consensus 265 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (440)
.|..+...|...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+..+.... +.+...+..+...+.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 34444444444444444444444444332 2233344444444444444444444444444432 112333344444455
Q ss_pred hcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHH
Q 039362 345 RAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422 (440)
Q Consensus 345 ~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 422 (440)
..++++.|.+.+++. ...| +...+..+...+...|++++|++.|+++++.+|.++.++..++.+|.+.|++++|.+.|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555555544 2222 34555666667777777777777777777777777777777777777777777777777
Q ss_pred HHHHhcC
Q 039362 423 EAMETRG 429 (440)
Q Consensus 423 ~~~~~~~ 429 (440)
++.++..
T Consensus 165 ~~al~~~ 171 (184)
T 3vtx_A 165 KKALEKE 171 (184)
T ss_dssp HHHHHTT
T ss_pred HHHHhCC
Confidence 7776654
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=5.3e-13 Score=115.21 Aligned_cols=221 Identities=12% Similarity=0.020 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 039362 177 KEALVIFEEMRDVGSKANEVTLVSVLCACA-------HLGAL-------DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242 (440)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 242 (440)
++|..+|++..... +.+...|..++..+. ..|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67777888777653 445556666665554 34775 8888888888874225566788888888888
Q ss_pred cCCHHHHHHHHhhhhhcCCc-hh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHH-cCCChHHHHH
Q 039362 243 CGAIKEALIVFHGVEKHQSD-VL-IWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA-HGGLVMEAWY 319 (440)
Q Consensus 243 ~g~~~~A~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~ 319 (440)
.|++++|..+|+++.+..|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88999999999888877664 33 78888888888889999999998888754 333344443333222 3688999999
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-C---CCcc--HhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039362 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-P---LEPT--ASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393 (440)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 393 (440)
+|++..+.. +.+...|..++..+.+.|++++|..+|++. . +.|+ ...|..++....+.|+.+.|..+++++.+
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 998888753 225667788888888889999999998887 2 3553 46778888888888999999999999998
Q ss_pred cCCCCCc
Q 039362 394 LQPDHDG 400 (440)
Q Consensus 394 ~~~~~~~ 400 (440)
..|.+..
T Consensus 270 ~~p~~~~ 276 (308)
T 2ond_A 270 AFREEYE 276 (308)
T ss_dssp HTTTTTS
T ss_pred Hcccccc
Confidence 8887654
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=3.6e-14 Score=128.13 Aligned_cols=93 Identities=6% Similarity=-0.058 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----hhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-------chh
Q 039362 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLS-LT----LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-------DVL 264 (440)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~ 264 (440)
.+..+...+...|++++|...+++..+.... .+ ...+..+..+|...|++++|...|++.....+ ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444455555555555555544332100 00 11344444445555555555555544432211 123
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 039362 265 IWNAMIGGLAMHGFVKESLELFTEM 289 (440)
Q Consensus 265 ~~~~l~~~~~~~~~~~~a~~~~~~m 289 (440)
.+..+...+...|++++|...+++.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444445555554444444
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.61 E-value=1.6e-14 Score=126.34 Aligned_cols=272 Identities=13% Similarity=0.051 Sum_probs=164.3
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCc-----chHHHHHHHhhchhcHHHHHHHHHHHHHc----CCC-CcHH
Q 039362 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDH-----LTYPFLAKASGRLAKRELAVAVHAQIAKT----GYE-SDLF 99 (440)
Q Consensus 30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 99 (440)
.+......+...|++++|+..|+++.+.. |+. ..+..+...+...|++++|.+.+++..+. +.. ....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 44555667788888888888888887753 332 45667777788888888888888776543 111 1234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CchhhHHHHHHHHHhcCC--
Q 039362 100 ISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE--RNVVSWSALIDGYVKCGD-- 175 (440)
Q Consensus 100 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~-- 175 (440)
++..+...+...|++++|...+++..+ +...... ....++..+...+...|+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 140 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLD------------------------ISRELNDKVGEARALYNLGNVYHAKGKSF 140 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------HHHHTTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH------------------------HHHHhcCchHHHHHHHHHHHHHHHcCccc
Confidence 566666677777777777766654432 0011000 012244455555555555
Q ss_pred ------------------HHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----C
Q 039362 176 ------------------YKEALVIFEEMRDV----GSKA-NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL-----S 227 (440)
Q Consensus 176 ------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~ 227 (440)
+++|...+++.... +..+ ....+..+...+...|++++|...+++..+... .
T Consensus 141 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 220 (338)
T 3ro2_A 141 GCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 220 (338)
T ss_dssp SSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH
Confidence 56665555554321 1111 123455566666677777777777766654310 1
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC---c----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc
Q 039362 228 LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS---D----VLIWNAMIGGLAMHGFVKESLELFTEMQIV----GITP 296 (440)
Q Consensus 228 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p 296 (440)
....++..+..++...|++++|...+++.....+ + ..++..+...+...|++++|...+++..+. +..+
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 1123566677777777777777777777654321 1 345666777778888888888888776543 1111
Q ss_pred -cHhhHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 039362 297 -DEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327 (440)
Q Consensus 297 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 327 (440)
...++..+...+...|++++|...+++..+.
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1335667777788888888888888887764
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.60 E-value=4.1e-12 Score=119.57 Aligned_cols=386 Identities=9% Similarity=0.032 Sum_probs=267.9
Q ss_pred CChhhHHHHhhhcC---CCChHHHHHHHHHHHccCC---hhhHHHHHHHHHHcC-CCCCcchHHHHHHHhhchhc-----
Q 039362 11 GNIDYSCKVLSHLS---NPRIFYWNTVIRGYSKSKN---PNKSISLFVKMLRAG-VSPDHLTYPFLAKASGRLAK----- 78 (440)
Q Consensus 11 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~----- 78 (440)
|.++.|..+|+++. +.....|...+..-.+.|+ ++.+..+|++..... .+|+...|..-+....+.++
T Consensus 80 ~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~ 159 (679)
T 4e6h_A 80 KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGG 159 (679)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTH
T ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccccc
Confidence 78999999999875 6677889999999899999 999999999998763 13787788877766554443
Q ss_pred ---HHHHHHHHHHHHHc-CC-CC-cHHHHHHHHHHHH---------hcCCHHHHHHHhhCCCC-C--c-hhhH---HHHH
Q 039362 79 ---RELAVAVHAQIAKT-GY-ES-DLFISNSLIHMYG---------SCGDIVYAREVFDGMPT-K--M-SVSW---NSML 136 (440)
Q Consensus 79 ---~~~a~~~~~~~~~~-~~-~~-~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~-~--~-~~~~---~~l~ 136 (440)
.+.+.++|+.++.. |. .+ +...|...+.... ..++++.+..+|+.+.. | + ..+| ..+.
T Consensus 160 ~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe 239 (679)
T 4e6h_A 160 EEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWE 239 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 24456788877653 54 44 3567777776543 23457788899988764 2 1 1122 2222
Q ss_pred HHH----------HhcCChHHHHHHHhhC-------CC--Cc--------------------hhhHHHHHHHHHhcC---
Q 039362 137 DGY----------AKCGEMNMARQVFELM-------PE--RN--------------------VVSWSALIDGYVKCG--- 174 (440)
Q Consensus 137 ~~~----------~~~~~~~~a~~~~~~~-------~~--~~--------------------~~~~~~l~~~~~~~~--- 174 (440)
... ....+++.|...+..+ .. |. ...|...+.---..+
T Consensus 240 ~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l 319 (679)
T 4e6h_A 240 QDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLEL 319 (679)
T ss_dssp HHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCC
T ss_pred HhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccc
Confidence 211 0112233444444331 10 00 134555544333222
Q ss_pred ----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHH
Q 039362 175 ----DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGR-MMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249 (440)
Q Consensus 175 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 249 (440)
..+.+..+|++.+... +-....|...+..+...|+.++|. .+|+...... |.+...+..++....+.|++++|
T Consensus 320 ~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~a 397 (679)
T 4e6h_A 320 SDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEI 397 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHH
Confidence 1345667888887653 556777777777788889999996 9999998754 66777788889999999999999
Q ss_pred HHHHhhhhhc-----------CCc------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHH
Q 039362 250 LIVFHGVEKH-----------QSD------------VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLS 306 (440)
Q Consensus 250 ~~~~~~~~~~-----------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 306 (440)
..+|+++.+. .|+ ...|...+....+.|+.+.|..+|.++.+.-..+....|...+.
T Consensus 398 R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~ 477 (679)
T 4e6h_A 398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAY 477 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 9999988753 131 23677788888888999999999999987611222334433333
Q ss_pred HHHcC-CChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc----cHhHHHHHHHHHHhcCC
Q 039362 307 ACAHG-GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP----TASMLGSLLTGCMNHGK 380 (440)
Q Consensus 307 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~ 380 (440)
.-.+. ++.+.|..+|+..++. ++.+...+...++.....|+.+.|..+|++. ...| ....|...+..-.+.|+
T Consensus 478 lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 478 IEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 23343 5589999999999986 2335556678888888999999999999997 3334 34678888888889999
Q ss_pred hhHHHHHHHHHHhcCCCCC
Q 039362 381 LDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 381 ~~~a~~~~~~~~~~~~~~~ 399 (440)
.+.+..+.+++.+..|+++
T Consensus 557 ~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 557 LNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp SHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999876
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=7e-13 Score=114.48 Aligned_cols=215 Identities=5% Similarity=-0.022 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHh-------cCCH-------HHHHHHHhhhhh-cCCc-hhhHHHHHHHHHh
Q 039362 212 DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK-------CGAI-------KEALIVFHGVEK-HQSD-VLIWNAMIGGLAM 275 (440)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~-~~~~~~l~~~~~~ 275 (440)
++|..+|+++++.. +.++..|..++..+.. .|++ ++|..+|++... ..|+ ...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999988875 7788888888887763 5886 999999999998 4674 5689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCcc-Hh-hHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHH-hcCCHHHH
Q 039362 276 HGFVKESLELFTEMQIVGITPD-EI-TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALS-RAGQVTEA 352 (440)
Q Consensus 276 ~~~~~~a~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 352 (440)
.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|+++.+.. +++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999974 554 33 78888889999999999999999999864 234444544333322 37999999
Q ss_pred HHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CC-CCchHHHHHHHHHhccChHHHHHHHHHHH
Q 039362 353 YEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ---PD-HDGRYVGLSNVYAIFKRWDEARTTREAME 426 (440)
Q Consensus 353 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 426 (440)
.++|++. ...| +...|..++..+.+.|++++|..+|+++++.. |. ....|..++..+.+.|+.++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988 3334 56788899999999999999999999999963 32 45578889999999999999999999998
Q ss_pred hcCC
Q 039362 427 TRGV 430 (440)
Q Consensus 427 ~~~~ 430 (440)
+...
T Consensus 269 ~~~p 272 (308)
T 2ond_A 269 TAFR 272 (308)
T ss_dssp HHTT
T ss_pred HHcc
Confidence 8654
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=126.10 Aligned_cols=243 Identities=14% Similarity=0.043 Sum_probs=139.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C-
Q 039362 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDV-------GSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK------G- 225 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 225 (440)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777888888888888888888887653 22333456677777788888888888888877654 1
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcC--------C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 039362 226 LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ--------S-DVLIWNAMIGGLAMHGFVKESLELFTEMQIV---- 292 (440)
Q Consensus 226 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---- 292 (440)
.+....++..+...|...|++++|...|+++.+.. | ....+..+...+...|++++|.+.++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 12334566777777778888888887777765431 2 2345666677777777777777777776553
Q ss_pred --CCCcc-HhhHHHHHHHHHcCCChHHHHHHHHHHhhcC-------CCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 039362 293 --GITPD-EITFLGLLSACAHGGLVMEAWYFFKSLGKRG-------MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLE 362 (440)
Q Consensus 293 --~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 362 (440)
+..|+ ..++..+...+...|++++|...++++.+.. ..+.........
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~---------------------- 244 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA---------------------- 244 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH----------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH----------------------
Confidence 11222 3356666667777777777777777766520 111111111111
Q ss_pred ccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 363 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
..+..+...+...+.+.++...+++.....|....++..++.+|.+.|++++|.+++++..+
T Consensus 245 ---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 245 ---EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11112222233344455555555555555555555566666666666666666666665554
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=125.02 Aligned_cols=241 Identities=12% Similarity=0.087 Sum_probs=170.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCC--------C---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC
Q 039362 129 SVSWNSMLDGYAKCGEMNMARQVFELMPE--------R---NVVSWSALIDGYVKCGDYKEALVIFEEMRDV------GS 191 (440)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 191 (440)
..++..+...+...|++++|...|+++.+ . ...++..+...|...|++++|...+++.... +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45788899999999999999999998764 1 2456888899999999999999999998764 22
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc----
Q 039362 192 KA-NEVTLVSVLCACAHLGALDQGRMMLRYMIDK------GL-SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH---- 259 (440)
Q Consensus 192 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 259 (440)
.| ....+..+...+...|++++|...++++.+. +. +.....+..+..+|...|++++|+.+|+++...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22 3567788889999999999999999998765 22 334567788999999999999999999998764
Q ss_pred ----CC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 039362 260 ----QS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVG-------ITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327 (440)
Q Consensus 260 ----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 327 (440)
.| ....+..+...+...|++++|...++++.+.. ..+..........
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------------------- 245 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAE--------------------- 245 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHH---------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH---------------------
Confidence 33 24578888999999999999999999988641 1111111111111
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 039362 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397 (440)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 397 (440)
.+..+...+...+.+.++...++.. ...| ...++..+...+...|++++|..++++++++.|.
T Consensus 246 -------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 246 -------EREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -------HHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred -------HHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122223334455556666666666 2334 4467888888999999999999999998887654
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=1e-12 Score=104.11 Aligned_cols=165 Identities=12% Similarity=0.045 Sum_probs=89.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 039362 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238 (440)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (440)
++..|..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34455555556666666666666666555543 3344455555555555666666665555555544 344445555555
Q ss_pred HHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHH
Q 039362 239 MYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317 (440)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 317 (440)
.+...++++.|...+.+.....| +...+..+...+...|++++|++.|++..+.. +.+..++..+..++.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 55555555555555555554444 34445555555555555555555555555442 33344555555555555555555
Q ss_pred HHHHHHHhh
Q 039362 318 WYFFKSLGK 326 (440)
Q Consensus 318 ~~~~~~~~~ 326 (440)
+..|+++++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555554
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.55 E-value=1.2e-11 Score=109.90 Aligned_cols=262 Identities=12% Similarity=0.002 Sum_probs=128.6
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C--ch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCH----HHHHHHH
Q 039362 136 LDGYAKCGEMNMARQVFELMPE--R--NV----VSWSALIDGYVKCGDYKEALVIFEEMRDVGS-KANE----VTLVSVL 202 (440)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~--~--~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~ 202 (440)
...+...|++++|...+++... | +. .+++.+...+...|++++|...+++...... .++. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3344556666666666655332 1 11 1344455556666666666666666543210 0111 1234445
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCC--C-chhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc------hhhHHHH
Q 039362 203 CACAHLGALDQGRMMLRYMIDK----GLS--L-TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD------VLIWNAM 269 (440)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~l 269 (440)
..+...|++++|...+++..+. +.+ | ....+..+..++...|++++|...+++.....+. ...+..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 5556666666666666665432 111 1 1233444556666666666666666665433221 2234455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCccH-hhHH-----HHHHHHHcCCChHHHHHHHHHHhhcCCCCC---cchHHHHH
Q 039362 270 IGGLAMHGFVKESLELFTEMQIVGITPDE-ITFL-----GLLSACAHGGLVMEAWYFFKSLGKRGMVPK---SEHYACMV 340 (440)
Q Consensus 270 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 340 (440)
...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 55566666666666666665433111110 1111 122234456666666666666554321111 11234455
Q ss_pred HHHHhcCCHHHHHHHHhcC-------CCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 039362 341 DALSRAGQVTEAYEFICQM-------PLEPTA-SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD 397 (440)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 397 (440)
..+...|++++|...+++. +..++. ..+..+..++...|+.++|...++++....++
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 5566666666666666554 111111 23444455555666666666666666555444
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=2.7e-13 Score=124.22 Aligned_cols=195 Identities=10% Similarity=-0.032 Sum_probs=92.2
Q ss_pred hhhHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 039362 160 VVSWSALIDGYVKCGDY-KEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (440)
...+..+...+...|++ ++|++.|++..+.. +.+...+..+..++...|++++|...|++..+.. |+...+..+..
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~ 178 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSM 178 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHH
Confidence 34444455555555555 55555555554442 2234444455555555555555555555554442 22344444555
Q ss_pred HHHhc---------CCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCC---cc
Q 039362 239 MYAKC---------GAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMH--------GFVKESLELFTEMQIVGIT---PD 297 (440)
Q Consensus 239 ~~~~~---------g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~---p~ 297 (440)
+|... |++++|+..|+++.+..| +...|..+..+|... |++++|+..|++..+.. + .+
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccC
Confidence 55555 555555555555444433 244444444444444 44555555555544432 1 23
Q ss_pred HhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC
Q 039362 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (440)
...+..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.+.++
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444445555555555555555555544432 112233444444444455555554444433
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.53 E-value=5.9e-12 Score=112.11 Aligned_cols=230 Identities=12% Similarity=0.024 Sum_probs=151.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----C-Cchhh
Q 039362 164 SALIDGYVKCGDYKEALVIFEEMRDVGS-KAN----EVTLVSVLCACAHLGALDQGRMMLRYMIDKGL-----S-LTLPL 232 (440)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~ 232 (440)
......+...|++++|+..|++...... .++ ..++..+..++...|+++.|...+++..+... . ....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3345566778888888888888765311 122 34566777788888888888888887765311 1 12446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhhhc---CC----chhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCccHhhH
Q 039362 233 QTSLIDMYAKCGAIKEALIVFHGVEKH---QS----DVLIWNAMIGGLAMHGFVKESLELFTEMQIV----GITPDEITF 301 (440)
Q Consensus 233 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~ 301 (440)
+..+..+|...|++++|...|++..+. .+ ...++..+...|...|++++|++.+++..+. +.+....++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 677888888888888888888876643 11 1345677778888888888888888887651 223335567
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhhcCCCC-C---cchHHHHHHHHHhcCC---HHHHHHHHhcCCCCccH-hHHHHHHH
Q 039362 302 LGLLSACAHGGLVMEAWYFFKSLGKRGMVP-K---SEHYACMVDALSRAGQ---VTEAYEFICQMPLEPTA-SMLGSLLT 373 (440)
Q Consensus 302 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~p~~-~~~~~l~~ 373 (440)
..+...+.+.|++++|...+++..+..... + ...+..+...|...++ +.+|+..+++.+..|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 777888888888888888888877652111 1 1223444555556666 77777777776444433 34556666
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 039362 374 GCMNHGKLDLAEIVGKKLVE 393 (440)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~ 393 (440)
.|...|++++|...++++.+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 67777777777777776654
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.53 E-value=7.7e-13 Score=117.85 Aligned_cols=228 Identities=10% Similarity=-0.035 Sum_probs=172.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-----CCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc---CC-----chhhH
Q 039362 200 SVLCACAHLGALDQGRMMLRYMIDKGL-----SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH---QS-----DVLIW 266 (440)
Q Consensus 200 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-----~~~~~ 266 (440)
.....+...|++++|...+++..+... +....++..+..+|...|+++.|...+.+.... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556789999999999999876421 123457788999999999999999999987654 11 13467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-cHhhHHHHHHHHHcCCChHHHHHHHHHHhhc----CCCCCcchHH
Q 039362 267 NAMIGGLAMHGFVKESLELFTEMQIV----GITP-DEITFLGLLSACAHGGLVMEAWYFFKSLGKR----GMVPKSEHYA 337 (440)
Q Consensus 267 ~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 337 (440)
+.+...|...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 88899999999999999999987653 2111 2346778888999999999999999998872 2122356788
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC----CC--Cc-cHhHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCchHHHHHH
Q 039362 338 CMVDALSRAGQVTEAYEFICQM----PL--EP-TASMLGSLLTGCMNHGK---LDLAEIVGKKLVELQPDHDGRYVGLSN 407 (440)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 407 (440)
.+...|.+.|++++|...+++. .. .| ....+..+...+...|+ ..+|+..+++. ...|.....+..++.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHH
Confidence 8999999999999999999886 11 22 23455666666777888 77787777762 112333456778999
Q ss_pred HHHhccChHHHHHHHHHHHhc
Q 039362 408 VYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 408 ~~~~~g~~~~A~~~~~~~~~~ 428 (440)
.|...|++++|.+.+++..+.
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999988753
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.51 E-value=2e-12 Score=106.36 Aligned_cols=207 Identities=11% Similarity=-0.061 Sum_probs=157.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHHH
Q 039362 193 ANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMIG 271 (440)
Q Consensus 193 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~ 271 (440)
.+...+......+...|++++|...|++..+...+++...+..+..++...|++++|+..|++..+..|+ ...+..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4567788888889999999999999999998874377778877999999999999999999999888774 677888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCccH-------hhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCC---cchHHHHHH
Q 039362 272 GLAMHGFVKESLELFTEMQIVGITPDE-------ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPK---SEHYACMVD 341 (440)
Q Consensus 272 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 341 (440)
.+...|++++|+..+++..+.. +.+. ..|..+...+...|++++|+..|+++.+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 9999999999999999988764 3334 45777777888899999999999999885 344 456777777
Q ss_pred HHHhcCCH--HHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039362 342 ALSRAGQV--TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409 (440)
Q Consensus 342 ~~~~~~~~--~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (440)
.|...|+. +++..+. ..+...+.... ....+.+++|+..++++.+.+|.++.+...+..+.
T Consensus 162 ~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 77666543 2222111 11233333332 33456789999999999999999987766665543
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.51 E-value=4e-13 Score=127.97 Aligned_cols=163 Identities=17% Similarity=0.207 Sum_probs=105.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 039362 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDA 342 (440)
Q Consensus 263 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (440)
...++.+...+.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|+..|+++++.. +-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455555555555555555555555555442 2234455555555556666666666666655542 1134455666666
Q ss_pred HHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHH
Q 039362 343 LSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEART 420 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 420 (440)
|...|++++|++.|++. .+.| +...+..+..++...|++++|+..|+++++++|+++..+..++.+|...|++++|.+
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 66666666666666665 3444 346677777888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHh
Q 039362 421 TREAMET 427 (440)
Q Consensus 421 ~~~~~~~ 427 (440)
.++++++
T Consensus 167 ~~~kal~ 173 (723)
T 4gyw_A 167 RMKKLVS 173 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777765
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=3.9e-13 Score=106.59 Aligned_cols=165 Identities=15% Similarity=0.008 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHH
Q 039362 231 PLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA 309 (440)
Q Consensus 231 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 309 (440)
..+..+...+...|++++|...++++.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455566666666777777777766665444 34555566666666666666666666665542 233444445555555
Q ss_pred cCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHH
Q 039362 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389 (440)
Q Consensus 310 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 389 (440)
..|++++|...++++.+.. +.+...+..++..+...|++++|...++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN---------------------------------PINFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC---------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 5555555555555554431 1233455566666667777777777777
Q ss_pred HHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 390 KLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
++.+..|.++..+..++.++...|++++|.+.++++.+..
T Consensus 135 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 135 IALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 7777777766677777777777777777777777766543
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.49 E-value=8.5e-12 Score=110.93 Aligned_cols=290 Identities=12% Similarity=0.025 Sum_probs=155.3
Q ss_pred HHHHHHHHhcCCHHHHHHHhhCCC----CCchh----hHHHHHHHHHhcCChHHHHHHHhhCCC-----Cc----hhhHH
Q 039362 102 NSLIHMYGSCGDIVYAREVFDGMP----TKMSV----SWNSMLDGYAKCGEMNMARQVFELMPE-----RN----VVSWS 164 (440)
Q Consensus 102 ~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~ 164 (440)
......+...|++++|...+++.. ..+.. .+..+...+...|++++|.+.+++... .+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445556677777777665432 11211 344555666677777777777766543 11 12345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc----CCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----chhhH
Q 039362 165 ALIDGYVKCGDYKEALVIFEEMRDV----GSK--AN-EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL----TLPLQ 233 (440)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 233 (440)
.+...+...|++++|...+++.... +.. |. ...+..+...+...|++++|...+++..+..... ....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 5666677777777777777765432 211 21 2344455666667777777777777765543211 12345
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhhhhc--CCch-hhHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCcc---HhhHH
Q 039362 234 TSLIDMYAKCGAIKEALIVFHGVEKH--QSDV-LIWN-----AMIGGLAMHGFVKESLELFTEMQIVGITPD---EITFL 302 (440)
Q Consensus 234 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~ 302 (440)
..+...+...|++++|...+++.... .++. ..+. ..+..+...|++++|...+++.......+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 56666677777777777777766533 1111 1111 122335567777777777766554321111 12345
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhhc----CCCCCc-chHHHHHHHHHhcCCHHHHHHHHhcC-CCCccHhHHHHHHHHHH
Q 039362 303 GLLSACAHGGLVMEAWYFFKSLGKR----GMVPKS-EHYACMVDALSRAGQVTEAYEFICQM-PLEPTASMLGSLLTGCM 376 (440)
Q Consensus 303 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~ 376 (440)
.+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++. ...+.. .....+.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~----g~~~~~~ 333 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT----GFISHFV 333 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH----CCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc----cHHHHHH
Confidence 5566666777777777777766543 111111 24445566666777777777776655 111110 1112233
Q ss_pred hcCChhHHHHHHHHHHhcCCC
Q 039362 377 NHGKLDLAEIVGKKLVELQPD 397 (440)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~ 397 (440)
..| +....+++......|.
T Consensus 334 ~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 334 IEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp TTH--HHHHHHHHHHHHTTCS
T ss_pred Hcc--HHHHHHHHHHHhCCCC
Confidence 333 4555566666655554
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=3.8e-12 Score=100.80 Aligned_cols=170 Identities=16% Similarity=0.062 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHH
Q 039362 195 EVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGL 273 (440)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 273 (440)
...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+..| +...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456777888899999999999999988765 56788899999999999999999999999987766 577888899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 039362 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAY 353 (440)
Q Consensus 274 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 353 (440)
...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. |+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~--------------------- 142 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PN--------------------- 142 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--cc---------------------
Confidence 99999999999999998774 4566677778888888888888888888877643 21
Q ss_pred HHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039362 354 EFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 354 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (440)
+...+..++..+...|++++|...++++.+..|.++
T Consensus 143 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 143 ----------EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred ----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 223444555555666666666666666666655544
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=3.6e-12 Score=104.87 Aligned_cols=194 Identities=13% Similarity=-0.052 Sum_probs=151.6
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcC--CchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHH
Q 039362 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQ--SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304 (440)
Q Consensus 227 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 304 (440)
+.++..+......+...|++++|+..|+++.+.. ++...+..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 3456788888999999999999999999988765 566777778889999999999999999988764 3456678888
Q ss_pred HHHHHcCCChHHHHHHHHHHhhcCCCCC-c-------chHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc---HhHHHHHH
Q 039362 305 LSACAHGGLVMEAWYFFKSLGKRGMVPK-S-------EHYACMVDALSRAGQVTEAYEFICQM-PLEPT---ASMLGSLL 372 (440)
Q Consensus 305 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~---~~~~~~l~ 372 (440)
...+...|++++|+..+++..+.. |+ . ..|..+...+...|++++|++.+++. ...|+ ...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 999999999999999999998864 33 3 34777788888999999999999887 66776 46677777
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 373 TGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
.++... +..+++++....+.++..+... .....+.+++|...+++..+..+
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC
Confidence 777544 4456777777776664444333 34456778999999999988654
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=1.3e-11 Score=117.59 Aligned_cols=164 Identities=10% Similarity=0.007 Sum_probs=106.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 039362 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 239 (440)
..+|+.+...|.+.|++++|++.|++.++.. +-+...+..+..++.+.|++++|+..|++.++.+ +.+...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4456666666667777777777776666553 2345566666666667777777777777666665 5556666667777
Q ss_pred HHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHH
Q 039362 240 YAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAW 318 (440)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 318 (440)
|...|++++|+..|++..+..| +...|+.+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence 7777777777777776666555 35566666777777777777777777766653 333456666666666777777766
Q ss_pred HHHHHHhh
Q 039362 319 YFFKSLGK 326 (440)
Q Consensus 319 ~~~~~~~~ 326 (440)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.42 E-value=1.9e-11 Score=103.86 Aligned_cols=198 Identities=15% Similarity=0.049 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc------C-CCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc--------C
Q 039362 196 VTLVSVLCACAHLGALDQGRMMLRYMIDK------G-LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH--------Q 260 (440)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~ 260 (440)
.++..+...+...|++++|...++++.+. + .+....++..+..+|...|++++|...|.++... .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34455555555556666665555555433 1 1223345555666666666666666666655433 1
Q ss_pred C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCc-cHhhHHHHHHHHHcCCChHHHHHHHHHHhhc-----
Q 039362 261 S-DVLIWNAMIGGLAMHGFVKESLELFTEMQIV------GITP-DEITFLGLLSACAHGGLVMEAWYFFKSLGKR----- 327 (440)
Q Consensus 261 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 327 (440)
| ....+..+...+...|++++|...++++.+. +..| ...++..+...+...|++++|...++++.+.
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2 2345666666677777777777777666543 1122 2345666667777777777777777766653
Q ss_pred --CCCCC-cchHHHHHHHHHhcCC------HHHHHHHHhcCC-CCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039362 328 --GMVPK-SEHYACMVDALSRAGQ------VTEAYEFICQMP-LEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393 (440)
Q Consensus 328 --~~~~~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 393 (440)
...+. ...+..+...+...+. +..+...++... ..| ...++..+...+...|++++|..+++++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222 2223333222222222 233333333332 222 224455566666666666666666666554
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.41 E-value=1.1e-11 Score=105.97 Aligned_cols=195 Identities=11% Similarity=-0.036 Sum_probs=109.8
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC---c----hhhHHHHHH
Q 039362 204 ACAHLGALDQGRMMLRYMIDK----GLSL-TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS---D----VLIWNAMIG 271 (440)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----~~~~~~l~~ 271 (440)
.+...|++++|...|.+..+. +.++ ...++..+..+|...|++++|+..|++.....+ + ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666655432 2111 134556666666666666666666666554322 1 235666666
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCC---Cc-c-HhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcc------hHHHH
Q 039362 272 GLAMH-GFVKESLELFTEMQIVGI---TP-D-EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSE------HYACM 339 (440)
Q Consensus 272 ~~~~~-~~~~~a~~~~~~m~~~~~---~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l 339 (440)
.|... |++++|+..|++..+... .+ . ..++..+...+.+.|++++|+..|+++.+........ .+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 77774 777777777777654310 00 0 2346666777777777777777777777643221111 34556
Q ss_pred HHHHHhcCCHHHHHHHHhcC-CCCccHh------HHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCC
Q 039362 340 VDALSRAGQVTEAYEFICQM-PLEPTAS------MLGSLLTGCM--NHGKLDLAEIVGKKLVELQPDH 398 (440)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~-~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~ 398 (440)
..++...|++++|...+++. .+.|+.. .+..++.++. ..+++++|+..|+++..++|..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 66677777777777777776 4445321 2333444443 3455667777776666655544
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.39 E-value=1.7e-10 Score=96.66 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=130.2
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC---chhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 039362 214 GRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS---DVLIWNAMIGGLAMHGFVKESLELFTEMQ 290 (440)
Q Consensus 214 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 290 (440)
+...+++..+.+ +++...+..+..++...|++++|++++.+.....| +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566777666655 45555556778888888888888888888765443 45667778888999999999999999987
Q ss_pred HcCCCc-----cHhhHHHHHHHHH--c--CCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-C
Q 039362 291 IVGITP-----DEITFLGLLSACA--H--GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-P 360 (440)
Q Consensus 291 ~~~~~p-----~~~~~~~l~~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~ 360 (440)
+. .| +..+...+..++. . .++..+|..+|+++.+.. |+......+..++.+.|++++|.+.++.+ .
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 56 3555666665532 2 348899999999987642 44223334444788999999999998765 2
Q ss_pred C----------Cc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 039362 361 L----------EP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR 401 (440)
Q Consensus 361 ~----------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 401 (440)
. .| ++.++..++......|+ +|.++++++.+..|+++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 2 13 55667566666666776 8899999999999999743
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.37 E-value=3.5e-12 Score=108.46 Aligned_cols=223 Identities=12% Similarity=0.059 Sum_probs=156.8
Q ss_pred HhcCChHHHHHHHHHHHHc-------CCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc--------CC-chhhHHHH
Q 039362 206 AHLGALDQGRMMLRYMIDK-------GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH--------QS-DVLIWNAM 269 (440)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~-~~~~~~~l 269 (440)
...|++++|...+++..+. ..+....++..+..+|...|++++|+..++++... .| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3556777777666665542 22345677889999999999999999999988754 23 35678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc------CC-CccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc------CCCC-Ccch
Q 039362 270 IGGLAMHGFVKESLELFTEMQIV------GI-TPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR------GMVP-KSEH 335 (440)
Q Consensus 270 ~~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 335 (440)
...+...|++++|...++++... .. +....++..+...+...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 11 233567888899999999999999999998875 1122 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcC-C---------CCccH-hHHHHHHHHHHhcCCh------hHHHHHHHHHHhcCCCC
Q 039362 336 YACMVDALSRAGQVTEAYEFICQM-P---------LEPTA-SMLGSLLTGCMNHGKL------DLAEIVGKKLVELQPDH 398 (440)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~-~---------~~p~~-~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~ 398 (440)
+..+...|...|++++|.+.+++. . ..+.. ..+..+.......+.. ..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 788899999999999999999876 1 12222 3344444333333332 23333333222223444
Q ss_pred CchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 399 DGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 399 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
..++..++.+|...|++++|.+++++.++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999998764
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.36 E-value=2.4e-11 Score=102.12 Aligned_cols=205 Identities=9% Similarity=-0.031 Sum_probs=122.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc----hhhH
Q 039362 194 NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT---LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD----VLIW 266 (440)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~ 266 (440)
+...+......+...|++++|...|+.+.+.. +.+ ...+..+..+|...|++++|+..|+++.+..|+ ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44455556666666777777777777766654 323 455666666667777777777777766655442 2334
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHcCCCccH-hhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHH
Q 039362 267 NAMIGGLAM--------HGFVKESLELFTEMQIVGITPDE-ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYA 337 (440)
Q Consensus 267 ~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 337 (440)
..+..++.. .|++++|+..|+++.+.. |+. .....+.. +..+... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 455555655 666666666666666542 322 11111100 0000000 001134
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC-CCCcc----HhHHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCCch-
Q 039362 338 CMVDALSRAGQVTEAYEFICQM-PLEPT----ASMLGSLLTGCMNH----------GKLDLAEIVGKKLVELQPDHDGR- 401 (440)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~- 401 (440)
.+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|+..++++++..|+++.+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 5677788888888888888877 33333 35666777777755 88899999999999999988743
Q ss_pred --HHHHHHHHHhccChHHHH
Q 039362 402 --YVGLSNVYAIFKRWDEAR 419 (440)
Q Consensus 402 --~~~l~~~~~~~g~~~~A~ 419 (440)
...+...+.+.|+++++.
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 444555555555555443
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.36 E-value=1.5e-10 Score=96.88 Aligned_cols=241 Identities=11% Similarity=0.033 Sum_probs=170.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 039362 168 DGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIK 247 (440)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 247 (440)
+-..-.|++..++.-..++. ...+......+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 44456788888877433321 122233444566788888876632 12233333444444433 322
Q ss_pred HHHHHHhhhhhc-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CccHhhHHHHHHHHHcCCChHHHHHHHHHHh
Q 039362 248 EALIVFHGVEKH-QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI-TPDEITFLGLLSACAHGGLVMEAWYFFKSLG 325 (440)
Q Consensus 248 ~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 325 (440)
|+..|++.... .++...+..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67788877654 35556667888899999999999999999876552 1355678888999999999999999999998
Q ss_pred hcCCCC-----CcchHHHHHHH--HHhcC--CHHHHHHHHhcC-CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhc-
Q 039362 326 KRGMVP-----KSEHYACMVDA--LSRAG--QVTEAYEFICQM-PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVEL- 394 (440)
Q Consensus 326 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 394 (440)
+. .| +..+...++.+ ....| ++.+|..+|+++ ...|+..+...++.++.+.|++++|.+.++.+.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 85 45 35555666666 33334 899999999999 54565333344455888999999999999988876
Q ss_pred ---------CCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 395 ---------QPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 395 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
+|.++.++..++......|+ +|.++++++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48888888777777777787 8999999998765
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.34 E-value=2e-10 Score=98.17 Aligned_cols=209 Identities=12% Similarity=0.018 Sum_probs=146.4
Q ss_pred hHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 039362 145 MNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV----GSKAN-EVTLVSVLCACAHLGALDQGRMMLR 219 (440)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 219 (440)
+++|...|.+. ...|...|++++|...|++.... |-+++ ..++..+..++...|++++|...++
T Consensus 33 ~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 101 (292)
T 1qqe_A 33 FEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56665555443 45667778888888887776443 21121 3567778888888888888888888
Q ss_pred HHHHcCC---CC--chhhHHHHHHHHHhc-CCHHHHHHHHhhhhhcCCc-------hhhHHHHHHHHHhcCChHHHHHHH
Q 039362 220 YMIDKGL---SL--TLPLQTSLIDMYAKC-GAIKEALIVFHGVEKHQSD-------VLIWNAMIGGLAMHGFVKESLELF 286 (440)
Q Consensus 220 ~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~ 286 (440)
+..+... .+ ...++..+..+|... |++++|+..|++.....|+ ..++..+...+...|++++|+..|
T Consensus 102 ~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 181 (292)
T 1qqe_A 102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY 181 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 7765421 11 134677888899986 9999999999988765332 346788899999999999999999
Q ss_pred HHHHHcCCCccH------hhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcc------hHHHHHHHHH--hcCCHHHH
Q 039362 287 TEMQIVGITPDE------ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSE------HYACMVDALS--RAGQVTEA 352 (440)
Q Consensus 287 ~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~~~~~~~a 352 (440)
++..+....... ..+..+..++...|++++|...|++..+. .|+.. .+..++.++. ..+++++|
T Consensus 182 ~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A 259 (292)
T 1qqe_A 182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEH 259 (292)
T ss_dssp HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHH
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998876422221 14667777888999999999999998874 23211 2344555664 45779999
Q ss_pred HHHHhcC-CCCccHh
Q 039362 353 YEFICQM-PLEPTAS 366 (440)
Q Consensus 353 ~~~~~~~-~~~p~~~ 366 (440)
+..|+++ .+.|...
T Consensus 260 ~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 260 CKEFDNFMRLDKWKI 274 (292)
T ss_dssp HHHHTTSSCCCHHHH
T ss_pred HHHhccCCccHHHHH
Confidence 9999887 6666553
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.30 E-value=5.9e-10 Score=91.21 Aligned_cols=203 Identities=12% Similarity=-0.004 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--chhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchh----hHHHH
Q 039362 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL--TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVL----IWNAM 269 (440)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~l 269 (440)
..+..+...+...|++++|...|+.+.+..... ....+..++.+|.+.|++++|+..|+++.+..|+.. .+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 344455566777777777777777777654211 134566677777777777777777777776655432 23333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcc-hHHHHHHHHHhcCC
Q 039362 270 IGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSE-HYACMVDALSRAGQ 348 (440)
Q Consensus 270 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 348 (440)
..++...+.. .+ ..|..+...+...|++++|...|+++++.. |+.. .+...... +.
T Consensus 85 g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----~~ 141 (225)
T 2yhc_A 85 GLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----VF 141 (225)
T ss_dssp HHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----HH
T ss_pred HHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----HH
Confidence 3344332210 00 012222333445788899999999888753 4332 22221111 00
Q ss_pred HHHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---chHHHHHHHHHhccChHHHHHHHHHH
Q 039362 349 VTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD---GRYVGLSNVYAIFKRWDEARTTREAM 425 (440)
Q Consensus 349 ~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 425 (440)
..... ......+...+.+.|++++|+..|+++++..|.++ .++..++.+|.+.|++++|.+.++.+
T Consensus 142 ~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 142 LKDRL-----------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHH-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHH-----------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 00000 11123566778899999999999999999999876 46889999999999999999999999
Q ss_pred HhcCCcc
Q 039362 426 ETRGVKK 432 (440)
Q Consensus 426 ~~~~~~~ 432 (440)
...+...
T Consensus 211 ~~~~~~~ 217 (225)
T 2yhc_A 211 AANSSNT 217 (225)
T ss_dssp HHCCSCC
T ss_pred HhhCCCc
Confidence 8876544
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.29 E-value=2.1e-10 Score=92.61 Aligned_cols=128 Identities=5% Similarity=-0.092 Sum_probs=92.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC
Q 039362 269 MIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQ 348 (440)
Q Consensus 269 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (440)
+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|+..|+++.+.. +.+...+..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 7778888888888888888887764 4456678888888888888888888888888864 2245667777777765543
Q ss_pred --HHHHHHHHhcC-CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 039362 349 --VTEAYEFICQM-PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH 398 (440)
Q Consensus 349 --~~~a~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 398 (440)
...+...++.. ...|....+.....++...|++++|+..|++++++.|.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 44556666666 333333445556666777889999999999999998864
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.26 E-value=4.9e-10 Score=107.28 Aligned_cols=171 Identities=13% Similarity=-0.005 Sum_probs=121.3
Q ss_pred HhcCChHHHHHHHHHHH--------HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhc
Q 039362 206 AHLGALDQGRMMLRYMI--------DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMH 276 (440)
Q Consensus 206 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 276 (440)
...|++++|.+.+++.. +.. +.+...+..+..+|...|++++|+..|+++.+..| +...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56778888888888776 433 55666777777888888888888888888776655 456777777788888
Q ss_pred CChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 039362 277 GFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFI 356 (440)
Q Consensus 277 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 356 (440)
|++++|+..|++..+.. +.+...+..+..++.+.|++++ +..|+++.+.. +.+...|..+..++.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888877663 3345667777777788888888 88888877754 124556777788888888888888888
Q ss_pred hcC-CCCccH-hHHHHHHHHHHhcCC
Q 039362 357 CQM-PLEPTA-SMLGSLLTGCMNHGK 380 (440)
Q Consensus 357 ~~~-~~~p~~-~~~~~l~~~~~~~g~ 380 (440)
+++ .+.|+. ..+..+..++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 887 566653 556666666655444
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.26 E-value=2.4e-10 Score=95.95 Aligned_cols=186 Identities=10% Similarity=-0.069 Sum_probs=141.3
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-C-ccHhh
Q 039362 227 SLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD----VLIWNAMIGGLAMHGFVKESLELFTEMQIVGI-T-PDEIT 300 (440)
Q Consensus 227 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~-p~~~~ 300 (440)
+.+...+..+...+.+.|++++|+..|+++.+..|+ ...+..+..++...|++++|+..|++..+... . .....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 455677778888999999999999999999887664 45778888899999999999999999987631 1 12345
Q ss_pred HHHHHHHHHc--------CCChHHHHHHHHHHhhcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHH
Q 039362 301 FLGLLSACAH--------GGLVMEAWYFFKSLGKRGMVPKS-EHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSL 371 (440)
Q Consensus 301 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l 371 (440)
+..+..++.. .|++++|+..|+++.+.. |+. .....+.......+. ....+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~---------------~~~~~~~l 154 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAK---------------LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 6677777777 899999999999998863 432 222222111111111 11225677
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhc----------cChHHHHHHHHHHHhcC
Q 039362 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDG---RYVGLSNVYAIF----------KRWDEARTTREAMETRG 429 (440)
Q Consensus 372 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 429 (440)
...+...|++++|+..|+++++..|.++. .+..++.+|... |++++|...++++++..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 88899999999999999999999998654 788889999877 89999999999998764
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.25 E-value=8.8e-12 Score=94.81 Aligned_cols=140 Identities=8% Similarity=-0.083 Sum_probs=92.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 039362 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352 (440)
Q Consensus 273 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 352 (440)
+...|++++|+..++...... +-+...+..+...|.+.|++++|+..|+++++.. +-+...|..+..+|...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 334456666666666554321 1123345556666666677777777777666643 12455666677777777777777
Q ss_pred HHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHH-HHHHHhcCCCCCchHHHHHHHHHhccC
Q 039362 353 YEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIV-GKKLVELQPDHDGRYVGLSNVYAIFKR 414 (440)
Q Consensus 353 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (440)
+..|++. .+.| +...+..+...+.+.|++++|.+. ++++++++|.++.+|......+...|+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777766 4455 356777888888888888766554 588999999998888888888777764
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.25 E-value=4.4e-11 Score=114.49 Aligned_cols=171 Identities=11% Similarity=-0.107 Sum_probs=146.9
Q ss_pred HhcCCHHHHHHHHhhhh--------hcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcC
Q 039362 241 AKCGAIKEALIVFHGVE--------KHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311 (440)
Q Consensus 241 ~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 311 (440)
...|++++|++.++++. +..| +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 77899999999999987 5555 56788889999999999999999999998864 44667888899999999
Q ss_pred CChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHH
Q 039362 312 GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGK 389 (440)
Q Consensus 312 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 389 (440)
|++++|+..|+++.+.. +.+...+..+..+|.+.|++++ ++.|++. ...| +...+..+..++.+.|++++|+..|+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999864 2256788899999999999999 9999988 5555 45788999999999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHhccC
Q 039362 390 KLVELQPDHDGRYVGLSNVYAIFKR 414 (440)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (440)
++.+.+|.+..++..++.++...|+
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC----
T ss_pred hhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999877655
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.24 E-value=4.3e-10 Score=90.76 Aligned_cols=184 Identities=10% Similarity=0.024 Sum_probs=96.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 039362 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE-VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240 (440)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 240 (440)
.+......+...|++++|+..|++.... .|+. ..+.. . .... ...........+..+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~~--------------~~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVDK--------------NSEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSCT--------------TSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhcc--------------hhhhhHHHHHHHHHHH
Confidence 3444555667778888888888877765 3332 22322 0 0000 0001112223366666
Q ss_pred HhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCC--hHHH
Q 039362 241 AKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGL--VMEA 317 (440)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--~~~a 317 (440)
...|++++|+..|++..+..| +...+..+...+...|++++|+..|++..+.. +.+..++..+...+...|. .+.+
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 666666777666666666555 35566666666666677777777776666653 3344555555555544332 2333
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCccHhHHH
Q 039362 318 WYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEPTASMLG 369 (440)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~~~~~~ 369 (440)
...++.... ..|....+.....++...|++++|...|++. .+.|+.....
T Consensus 144 ~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 194 (208)
T 3urz_A 144 ETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQK 194 (208)
T ss_dssp HHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHH
T ss_pred HHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHH
Confidence 444444322 1222223333445555667777777777765 5666654433
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.24 E-value=1.9e-10 Score=85.51 Aligned_cols=127 Identities=21% Similarity=0.183 Sum_probs=79.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CC-CccHhHHHHHHHHHHhcC
Q 039362 302 LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PL-EPTASMLGSLLTGCMNHG 379 (440)
Q Consensus 302 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~p~~~~~~~l~~~~~~~g 379 (440)
..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++ .. ..+...+..++..+...|
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 334444444455555555555544432 113334444555555555555555555554 11 223455666777777888
Q ss_pred ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 380 KLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
++++|...++++.+..|.++..+..++.++...|++++|...++++.+..
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 88888888888888887777777888888888888888888888777643
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.21 E-value=1.8e-09 Score=80.05 Aligned_cols=128 Identities=17% Similarity=0.251 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 039362 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241 (440)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 241 (440)
.|..+...+...|++++|..+++++...+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555566666666666666666665543 3344455555555666666666666666665544 334445555555555
Q ss_pred hcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039362 242 KCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQI 291 (440)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 291 (440)
..|++++|...++++....| +...+..+...+...|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555554433 344445555555555555555555555544
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=7.1e-09 Score=87.81 Aligned_cols=231 Identities=9% Similarity=-0.032 Sum_probs=151.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCchhhHHHHHHHH----Hhc--
Q 039362 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG--ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY----AKC-- 243 (440)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 243 (440)
+....++|++++++++..+ +-+...++.--.++...+ ++++++..++.+...+ |.+..+|+.-..++ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 3344567888888887763 334445566666666677 7888888888887776 55556665544444 444
Q ss_pred -CCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCC------
Q 039362 244 -GAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVK--ESLELFTEMQIVGITPDEITFLGLLSACAHGGL------ 313 (440)
Q Consensus 244 -g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~------ 313 (440)
+++++++.+++.+.+..| +...|+...-.+.+.|.++ ++++.++++.+.. +-|...|+.-...+.+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 677888888888776655 5667777766677777777 7888888877765 4455566666556666665
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHH-HHHHHhcC-CC----CccHhHHHHHHHHHHhcCChhHHHHH
Q 039362 314 VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTE-AYEFICQM-PL----EPTASMLGSLLTGCMNHGKLDLAEIV 387 (440)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~a~~~ 387 (440)
++++++.++.++...+ -|...|+.+...+.+.|+..+ +.++.+++ .. ..+...+..++..+.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 6777777777777542 256667777777777776433 44566655 22 12445666677777777777777777
Q ss_pred HHHHHh-cCCCCCchHHHHH
Q 039362 388 GKKLVE-LQPDHDGRYVGLS 406 (440)
Q Consensus 388 ~~~~~~-~~~~~~~~~~~l~ 406 (440)
++.+.+ .+|.....|...+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 777775 5777666555443
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.21 E-value=1.5e-09 Score=87.73 Aligned_cols=161 Identities=11% Similarity=-0.100 Sum_probs=100.0
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCC----ChHHHHHHHHHHhhcCCCCCcchHH
Q 039362 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGG----LVMEAWYFFKSLGKRGMVPKSEHYA 337 (440)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 337 (440)
++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44455555555555666666666666665543 23344445444544 4 6666666666665543 344555
Q ss_pred HHHHHHHh----cCCHHHHHHHHhcC-CCCcc---HhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCchHHHH
Q 039362 338 CMVDALSR----AGQVTEAYEFICQM-PLEPT---ASMLGSLLTGCMN----HGKLDLAEIVGKKLVELQPDHDGRYVGL 405 (440)
Q Consensus 338 ~l~~~~~~----~~~~~~a~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l 405 (440)
.|...|.. .+++++|.++|++. ...|. +..+..|...|.. .+++++|...|+++.+. |.++..+..+
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~L 168 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWA 168 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence 56555655 56677777777666 33332 5666666666666 66778888888888777 5555577777
Q ss_pred HHHHHhc-c-----ChHHHHHHHHHHHhcCC
Q 039362 406 SNVYAIF-K-----RWDEARTTREAMETRGV 430 (440)
Q Consensus 406 ~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 430 (440)
+.+|... | ++++|...+++..+.|.
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7777653 3 77888888887777654
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=3.2e-08 Score=83.76 Aligned_cols=215 Identities=11% Similarity=0.082 Sum_probs=148.0
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC--CHHHHHHHHhhhhhcCC-chhhHHHHHHHH----Hhc---CCh
Q 039362 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG--AIKEALIVFHGVEKHQS-DVLIWNAMIGGL----AMH---GFV 279 (440)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~----~~~---~~~ 279 (440)
..++|+..++.++..+ |.+..+++.-..++...| ++++++.+++.+....| +..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3457777777777776 666667777777777777 88888888888776666 445555544444 444 677
Q ss_pred HHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChH--HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC------HHH
Q 039362 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM--EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQ------VTE 351 (440)
Q Consensus 280 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 351 (440)
++++++++.+.+.. +-+...|..-...+.+.|.++ +++++++++++... -|...|+.....+...++ +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 88888888887764 445666666666666677776 78888888877653 256666666666666665 777
Q ss_pred HHHHHhcC-CCCc-cHhHHHHHHHHHHhcCCh-hHHHHHHHHHHhcC---CCCCchHHHHHHHHHhccChHHHHHHHHHH
Q 039362 352 AYEFICQM-PLEP-TASMLGSLLTGCMNHGKL-DLAEIVGKKLVELQ---PDHDGRYVGLSNVYAIFKRWDEARTTREAM 425 (440)
Q Consensus 352 a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 425 (440)
+++.++++ ...| |...|+.+...+.+.|+. +.+..+.+++.+.+ |.++..+..++.+|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 77777776 3344 556677777777676664 33556777766665 666677778888888888888888888887
Q ss_pred Hh
Q 039362 426 ET 427 (440)
Q Consensus 426 ~~ 427 (440)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.20 E-value=2.1e-10 Score=98.80 Aligned_cols=180 Identities=11% Similarity=0.003 Sum_probs=110.3
Q ss_pred HHHHhcCCHHHHHHHHhhhhhcCC-------chhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCcc--HhhHHHHH
Q 039362 238 DMYAKCGAIKEALIVFHGVEKHQS-------DVLIWNAMIGGLAMHGFVKESLELFTEMQIVG---ITPD--EITFLGLL 305 (440)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~~~~~l~ 305 (440)
..|...|++++|...|.+.....+ -...|+.+...|...|++++|+..|++..+.- -.|. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445566666666666666543311 13356666677777777777777777654321 0121 24566666
Q ss_pred HHHHcCCChHHHHHHHHHHhhcCCCC-----CcchHHHHHHHHHhcCCHHHHHHHHhcC-CCC------cc-HhHHHHHH
Q 039362 306 SACAHGGLVMEAWYFFKSLGKRGMVP-----KSEHYACMVDALSRAGQVTEAYEFICQM-PLE------PT-ASMLGSLL 372 (440)
Q Consensus 306 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~------p~-~~~~~~l~ 372 (440)
..|.. |++++|+..|++..+..... ...++..+...|.+.|++++|++.+++. .+. +. ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 77766 88888888887776541100 1345667777888888888888888776 211 11 12555666
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCch-----HHHHHHHHHhccChHHHHH
Q 039362 373 TGCMNHGKLDLAEIVGKKLVELQPDHDGR-----YVGLSNVYAIFKRWDEART 420 (440)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~A~~ 420 (440)
.++...|++++|...|++++ ..|..... ...++.++ ..|+.+.+.+
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 67777788888888888888 77765432 33344444 4566655544
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=4.5e-09 Score=96.19 Aligned_cols=372 Identities=9% Similarity=-0.003 Sum_probs=186.7
Q ss_pred C-ChhhHHHHhhhcCCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhc-HHHHHHHHHH
Q 039362 11 G-NIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAK-RELAVAVHAQ 88 (440)
Q Consensus 11 g-~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 88 (440)
| +++.|+.+|+.... .+-. |+++.+..+|++.... .|+...|...+....+.++ .+....+|+.
T Consensus 8 ~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 8 GVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp ----CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred CcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6 37777777776531 1111 8899999999998874 4788888888887766653 4567778887
Q ss_pred HHHc-CC-CCcHHHHHHHHHHHH----hcCCHHHHHHHhhCCCCCchhhHHHHHHHHH---hcCChHHHHHHHhhCCCCc
Q 039362 89 IAKT-GY-ESDLFISNSLIHMYG----SCGDIVYAREVFDGMPTKMSVSWNSMLDGYA---KCGEMNMARQVFELMPERN 159 (440)
Q Consensus 89 ~~~~-~~-~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~ 159 (440)
++.. |. ..+..+|...+..+. ..|+.+.+..+|+.........+..+-..|. .......+.+++..
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~----- 148 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD----- 148 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH-----
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHH-----
Confidence 7764 42 235677777776544 2456777888887765411111111111111 11111112221111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--CC-----hHHHHHHHHHHHHcCCCCchhh
Q 039362 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHL--GA-----LDQGRMMLRYMIDKGLSLTLPL 232 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~ 232 (440)
. .+.+..|..+++.+...-...+...+...+.--... +- .+.+..+|++++... +.+...
T Consensus 149 ----------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~l 215 (493)
T 2uy1_A 149 ----------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEV 215 (493)
T ss_dssp ----------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHH
T ss_pred ----------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHH
Confidence 0 012223333333322110001122232222221111 00 234556677666654 555666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---------C---CccHhh
Q 039362 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVG---------I---TPDEIT 300 (440)
Q Consensus 233 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~---~p~~~~ 300 (440)
|...+..+.+.|+.++|..+|++.... |....... .|....+.++. ++.+.+.- . ......
T Consensus 216 W~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 216 YFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHH
Confidence 666666677777777777777777666 54332211 12211111111 22221110 0 011133
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc-CCHHHHHHHHhcC--CCCccHhHHHHHHHHHHh
Q 039362 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA-GQVTEAYEFICQM--PLEPTASMLGSLLTGCMN 377 (440)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~ 377 (440)
|...+....+.++.+.|..+|+++ ... ..+...|...+..-... ++.+.|..+|+.. ....++..+...+.....
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455555555566677777777777 321 12223333222222222 3577777777765 221123445555665666
Q ss_pred cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 378 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
.|+.+.|..+|+++ +.....|...+..-...|+.+.+.+++++..+
T Consensus 367 ~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 367 IGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777776 22344566666666667777777777776664
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.19 E-value=6.9e-10 Score=94.42 Aligned_cols=163 Identities=10% Similarity=-0.052 Sum_probs=115.2
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchH-HHHH
Q 039362 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHY-ACMV 340 (440)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 340 (440)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 34455566666777777777777777776653 3345566677777777777777777777776643 332222 2222
Q ss_pred HHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CchHHHHHHHHHhccChH
Q 039362 341 DALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH--DGRYVGLSNVYAIFKRWD 416 (440)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 416 (440)
..+...++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|.+ ...+..++.++...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 3355666777777777766 3344 45777888888889999999999999999998887 668888999999999999
Q ss_pred HHHHHHHHHHh
Q 039362 417 EARTTREAMET 427 (440)
Q Consensus 417 ~A~~~~~~~~~ 427 (440)
+|...+++.+.
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 98888877654
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.18 E-value=1.8e-10 Score=90.28 Aligned_cols=159 Identities=9% Similarity=-0.004 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcC
Q 039362 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG 311 (440)
Q Consensus 233 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 311 (440)
...+...+...|++++|...|+++.+..| +...+..+...+...|++++|+..+++.... .|+......+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~---- 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKL---- 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHH----
Confidence 34445555566666666666666554444 3445555555556666666666665554433 2222111111000
Q ss_pred CChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHH
Q 039362 312 GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGK 389 (440)
Q Consensus 312 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 389 (440)
.+...+...+|...+++. ...| +...+..+...+...|++++|+..++
T Consensus 83 ------------------------------~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 83 ------------------------------ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp ------------------------------HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------------------------------HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 001111122344445444 3344 35667777788888888888888888
Q ss_pred HHHhcCCCC--CchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 390 KLVELQPDH--DGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 390 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
++++.+|.. +..+..++.++...|+.++|...+++.+.
T Consensus 133 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 133 NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 888888765 44778888888888888888888877654
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.15 E-value=9.1e-08 Score=87.55 Aligned_cols=354 Identities=12% Similarity=-0.011 Sum_probs=214.2
Q ss_pred cCChhhHHHHhhhcC--CCChHHHHHHHHHHHccCC-hhhHHHHHHHHHHc-CCC-CCcchHHHHHHHhh----chhcHH
Q 039362 10 LGNIDYSCKVLSHLS--NPRIFYWNTVIRGYSKSKN-PNKSISLFVKMLRA-GVS-PDHLTYPFLAKASG----RLAKRE 80 (440)
Q Consensus 10 ~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~----~~~~~~ 80 (440)
.|+++.|..+|++.. -|++..|...+....+.++ .+....+|+..... |.. ++...|...+..+. ..++.+
T Consensus 27 ~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~ 106 (493)
T 2uy1_A 27 SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE 106 (493)
T ss_dssp TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHH
Confidence 378999999999876 4899999999998877764 46778889987765 432 35567777777654 357899
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC---
Q 039362 81 LAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE--- 157 (440)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 157 (440)
.+.++|+.++...+..-...|...... ........+..++.+.. +.+..|..+++.+..
T Consensus 107 ~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~-----------------~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 107 KIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL-----------------PIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh-----------------HHHHHHHHHHHHHHHHHh
Confidence 999999999984222112233322221 11222222332222110 122223323222221
Q ss_pred -CchhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 039362 158 -RNVVSWSALIDGYVKCG-------DYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT 229 (440)
Q Consensus 158 -~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 229 (440)
.+...|...+.--...+ ..+.+..+|+++.... +.+...+...+..+.+.|+++.|..++++.... |.+
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 13335555444322211 1345677888877653 445666777777777888899999999988877 444
Q ss_pred hhhHHHHHHHHHhcCCHHHH-HHHHhhhh--h--------cCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccH
Q 039362 230 LPLQTSLIDMYAKCGAIKEA-LIVFHGVE--K--------HQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDE 298 (440)
Q Consensus 230 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~--~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 298 (440)
...+.. |......++. ..+.+... . .......|...+....+.++.+.|..+|+++ ... ..+.
T Consensus 246 ~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~ 319 (493)
T 2uy1_A 246 MFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGP 319 (493)
T ss_dssp SHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCH
T ss_pred HHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCCh
Confidence 433332 2221111111 11111110 0 0112345677777777788899999999998 321 2233
Q ss_pred hhHHHHHHHHHc-CCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHh
Q 039362 299 ITFLGLLSACAH-GGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN 377 (440)
Q Consensus 299 ~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~ 377 (440)
..|......-.. .++.+.|..+|+...+.. +-+...+...++...+.|+.+.|..+|+++. .....|...+..-..
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 334322221112 246999999999998863 1234455667777788999999999999983 356788888887788
Q ss_pred cCChhHHHHHHHHHHh
Q 039362 378 HGKLDLAEIVGKKLVE 393 (440)
Q Consensus 378 ~g~~~~a~~~~~~~~~ 393 (440)
.|+.+.+..+++++.+
T Consensus 397 ~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 397 VGSMELFRELVDQKMD 412 (493)
T ss_dssp HSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8999999999998875
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.15 E-value=4e-10 Score=85.53 Aligned_cols=82 Identities=7% Similarity=-0.061 Sum_probs=38.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCC
Q 039362 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGF 278 (440)
Q Consensus 200 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 278 (440)
.+...|...|++++|...|++.++.. |.+..++..+..+|...|++++|+..|+++.+..| +...+..+...|.+.|+
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV 114 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34444444444444444444444443 33444444444445555555555555544444444 23444444445555555
Q ss_pred hHHH
Q 039362 279 VKES 282 (440)
Q Consensus 279 ~~~a 282 (440)
+++|
T Consensus 115 ~~~a 118 (150)
T 4ga2_A 115 TDGR 118 (150)
T ss_dssp SSSH
T ss_pred hHHH
Confidence 4443
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=2.7e-09 Score=90.74 Aligned_cols=164 Identities=9% Similarity=-0.030 Sum_probs=103.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHH-
Q 039362 192 KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMI- 270 (440)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~- 270 (440)
+.+...+..+...+...|++++|...++++.+.. |.+...+..+..++...|++++|...++++....|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3344455566666777777777777777777665 55666777777777777777777777777766666543322222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCC-CcchHHHHHHHHHhcCCH
Q 039362 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP-KSEHYACMVDALSRAGQV 349 (440)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 349 (440)
..+...++.++|+..+++..... +.+...+..+...+...|++++|...|.++.+..... +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23455566666777777766653 4445566667777777777777777777777653211 134555666666666666
Q ss_pred HHHHHHHh
Q 039362 350 TEAYEFIC 357 (440)
Q Consensus 350 ~~a~~~~~ 357 (440)
++|...++
T Consensus 272 ~~a~~~~r 279 (287)
T 3qou_A 272 DALASXYR 279 (287)
T ss_dssp CHHHHHHH
T ss_pred CcHHHHHH
Confidence 66655554
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.13 E-value=6.6e-10 Score=104.55 Aligned_cols=162 Identities=14% Similarity=0.042 Sum_probs=124.0
Q ss_pred cCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHH
Q 039362 243 CGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFF 321 (440)
Q Consensus 243 ~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 321 (440)
.|++++|...|+++.+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999999887766 47788999999999999999999999998764 445678889999999999999999999
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhc---CChhHHHHHHHHHHhcCC
Q 039362 322 KSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNH---GKLDLAEIVGKKLVELQP 396 (440)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~ 396 (440)
++..+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |++++|...++++++.+|
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 9999864 235678889999999999999999999998 4445 457788899999999 999999999999999999
Q ss_pred CCCchHHHHH
Q 039362 397 DHDGRYVGLS 406 (440)
Q Consensus 397 ~~~~~~~~l~ 406 (440)
.+...+..++
T Consensus 160 ~~~~~~~~l~ 169 (568)
T 2vsy_A 160 GAVEPFAFLS 169 (568)
T ss_dssp CCSCHHHHTT
T ss_pred cccChHHHhC
Confidence 9888777666
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.13 E-value=1.2e-08 Score=83.47 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=14.6
Q ss_pred hcCCHHHHHHHHhhhhhcCCc
Q 039362 242 KCGAIKEALIVFHGVEKHQSD 262 (440)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~~ 262 (440)
..|++++|...|+++.+..|+
T Consensus 108 ~~~~~~~A~~~~~~~l~~~P~ 128 (225)
T 2yhc_A 108 DPQQARAAFSDFSKLVRGYPN 128 (225)
T ss_dssp CCHHHHHHHHHHHHHHTTCTT
T ss_pred CcHHHHHHHHHHHHHHHHCcC
Confidence 356777777777777766664
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.13 E-value=3.1e-09 Score=83.21 Aligned_cols=154 Identities=12% Similarity=0.039 Sum_probs=86.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcC
Q 039362 134 SMLDGYAKCGEMNMARQVFELMPE---RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCA-CAHLG 209 (440)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 209 (440)
.+...+.+.|++++|...|++..+ .+...+..+...+...|++++|+..+++..... |+.......... +...+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 334444555555555555555543 234556666666666666666666666654432 232222211111 11212
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc---hhhHHHHHHHHHhcCChHHHHHHH
Q 039362 210 ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD---VLIWNAMIGGLAMHGFVKESLELF 286 (440)
Q Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 286 (440)
....+...+++..+.. |.+...+..+..++...|++++|...|+++.+..|+ ...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2234566666666654 455666666777777777777777777776665553 335666667777777777777766
Q ss_pred HHHH
Q 039362 287 TEMQ 290 (440)
Q Consensus 287 ~~m~ 290 (440)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.12 E-value=1.2e-09 Score=102.76 Aligned_cols=149 Identities=9% Similarity=-0.103 Sum_probs=111.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHH
Q 039362 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELF 286 (440)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 286 (440)
.|++++|...+++..+.. +.+...+..+...|...|++++|...|++..+..| +...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988775 66778889999999999999999999999987766 4678888999999999999999999
Q ss_pred HHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc---CCHHHHHHHHhcC
Q 039362 287 TEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA---GQVTEAYEFICQM 359 (440)
Q Consensus 287 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~ 359 (440)
++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9988864 4456788888999999999999999999998864 22566788888899999 9999999999887
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.09 E-value=3.9e-10 Score=97.08 Aligned_cols=195 Identities=8% Similarity=-0.049 Sum_probs=146.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 039362 208 LGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFT 287 (440)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 287 (440)
.|++++|.+++++..+.. +.. .+...++++.|...|..+ ...|...|++++|...|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA-------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHH
Confidence 466778888887776542 111 011147888888887765 457788899999999998
Q ss_pred HHHHc----CCCcc-HhhHHHHHHHHHcCCChHHHHHHHHHHhhcC--C-CC--CcchHHHHHHHHHhcCCHHHHHHHHh
Q 039362 288 EMQIV----GITPD-EITFLGLLSACAHGGLVMEAWYFFKSLGKRG--M-VP--KSEHYACMVDALSRAGQVTEAYEFIC 357 (440)
Q Consensus 288 ~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (440)
+..+. +-.+. ..+|..+...|...|++++|+..|++..+.- . .+ ...++..+...|.. |++++|++.++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87653 21111 3478888889999999999999999887651 1 11 13567788888988 99999999998
Q ss_pred cC-CCCc-------cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhccChHHHHHHHH
Q 039362 358 QM-PLEP-------TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG------RYVGLSNVYAIFKRWDEARTTRE 423 (440)
Q Consensus 358 ~~-~~~p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~ 423 (440)
+. .+.| ...++..+...+...|++++|+..++++++..|.+.. .+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 87 2221 1467888999999999999999999999998655432 56677788888899999999999
Q ss_pred HHH
Q 039362 424 AME 426 (440)
Q Consensus 424 ~~~ 426 (440)
+.+
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 987
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.08 E-value=7.1e-10 Score=93.98 Aligned_cols=95 Identities=11% Similarity=-0.106 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHH
Q 039362 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLA 274 (440)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 274 (440)
..+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|+..++++.+..| +...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444445555555555555555555443 33444455555555555555555555555544433 2334444444555
Q ss_pred hcCChHHHHHHHHHHHH
Q 039362 275 MHGFVKESLELFTEMQI 291 (440)
Q Consensus 275 ~~~~~~~a~~~~~~m~~ 291 (440)
..|++++|...|++..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555544443
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.06 E-value=6.6e-10 Score=83.92 Aligned_cols=97 Identities=10% Similarity=-0.017 Sum_probs=73.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 039362 333 SEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410 (440)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (440)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++.+|.++..+..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 345566667777777777777777776 4444 45677777788888888888888888888888888888888888888
Q ss_pred hccChHHHHHHHHHHHhcC
Q 039362 411 IFKRWDEARTTREAMETRG 429 (440)
Q Consensus 411 ~~g~~~~A~~~~~~~~~~~ 429 (440)
..|++++|...|++.++..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888877654
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=1.6e-08 Score=81.66 Aligned_cols=172 Identities=13% Similarity=0.072 Sum_probs=115.2
Q ss_pred HHHHHhhCCC-CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 039362 148 ARQVFELMPE-RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG----ALDQGRMMLRYMI 222 (440)
Q Consensus 148 a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~ 222 (440)
|.+.|++..+ .++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|...|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3444444333 456677777777777788888888888877654 44555566666665 5 7788888888776
Q ss_pred HcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHhhhhhcCCc---hhhHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 039362 223 DKGLSLTLPLQTSLIDMYAK----CGAIKEALIVFHGVEKHQSD---VLIWNAMIGGLAM----HGFVKESLELFTEMQI 291 (440)
Q Consensus 223 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~ 291 (440)
+.+ ++..+..|...|.. .+++++|+.+|++..+..+. +..+..|...|.. .+++++|+..|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 654 45566667777766 67788888888877765553 6677777777777 6778888888887776
Q ss_pred cCCCccHhhHHHHHHHHHcC-C-----ChHHHHHHHHHHhhcC
Q 039362 292 VGITPDEITFLGLLSACAHG-G-----LVMEAWYFFKSLGKRG 328 (440)
Q Consensus 292 ~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 328 (440)
. ..+...+..|...|... | +.++|...|++..+.|
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5 22333455555555432 2 6778888887777765
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.05 E-value=1.8e-08 Score=81.58 Aligned_cols=90 Identities=12% Similarity=-0.076 Sum_probs=51.7
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 039362 134 SMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ 213 (440)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (440)
.+...+...|++++|...|++...++...+..+...+...|++++|+..+++..... +.+...+..+..++...|++++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 344445555555555555555555555556666666666666666666666655543 3344455555555666666666
Q ss_pred HHHHHHHHHHc
Q 039362 214 GRMMLRYMIDK 224 (440)
Q Consensus 214 a~~~~~~~~~~ 224 (440)
|...++...+.
T Consensus 90 A~~~~~~al~~ 100 (213)
T 1hh8_A 90 AIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 66666665553
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.02 E-value=6.5e-09 Score=84.14 Aligned_cols=131 Identities=11% Similarity=-0.082 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 039362 264 LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDAL 343 (440)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (440)
..+..+...+...|++++|...|++.. .|+...+..+...+...|++++|+..+++..+.. +.+...+..+...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345667778888999999999998763 6677888889999999999999999999988864 23566788888999
Q ss_pred HhcCCHHHHHHHHhcC-CCCc-----------------cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039362 344 SRAGQVTEAYEFICQM-PLEP-----------------TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 344 ~~~~~~~~a~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (440)
...|++++|.+.+++. ...| ....+..+..++...|++++|...++++.+..|.+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 9999999999999887 3222 226778888889999999999999999999988863
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.00 E-value=3.2e-08 Score=84.46 Aligned_cols=160 Identities=8% Similarity=-0.073 Sum_probs=112.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCccHh----hHHHHHHHHHcCCChHHHHHHHHHHhhcCCC-CCc----chHH
Q 039362 268 AMIGGLAMHGFVKESLELFTEMQIVG-ITPDEI----TFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PKS----EHYA 337 (440)
Q Consensus 268 ~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~ 337 (440)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|+..++++.+.... ++. .+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34566677788888888887776532 122211 2233555566667888888888888774222 221 2577
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC--------CCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CchH
Q 039362 338 CMVDALSRAGQVTEAYEFICQM--------PLEPT-ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH------DGRY 402 (440)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~ 402 (440)
.+...|...|++++|...++++ ...+. ..++..++..|.+.|++++|+..++++++..+.. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 7888888888888888887776 11122 2477888999999999999999999998865332 3468
Q ss_pred HHHHHHHHhccC-hHHHHHHHHHHHh
Q 039362 403 VGLSNVYAIFKR-WDEARTTREAMET 427 (440)
Q Consensus 403 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 427 (440)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 889999999995 6999999988865
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.97 E-value=5.9e-08 Score=82.82 Aligned_cols=163 Identities=6% Similarity=-0.100 Sum_probs=102.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcc-H----hhHHHHHHHHHcCCChHHHHHHHHHHhhcCCC-CC----cc
Q 039362 265 IWNAMIGGLAMHGFVKESLELFTEMQIVGITPD-E----ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMV-PK----SE 334 (440)
Q Consensus 265 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 334 (440)
.+...+..+...|++++|.+.+.+..+...... . ..+..+...+...|++++|+..+++..+.... .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455566677777777777766655421111 1 12333444556667777777777777653111 11 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcC-------CCCc--cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--C----C
Q 039362 335 HYACMVDALSRAGQVTEAYEFICQM-------PLEP--TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD--H----D 399 (440)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~----~ 399 (440)
+++.+...|...|++++|...++++ +..+ ...++..++..|...|++++|+..++++++..+. + .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5667777777788888777777765 1111 1246777888888888888888888888765421 1 2
Q ss_pred chHHHHHHHHHhccChHHH-HHHHHHHHh
Q 039362 400 GRYVGLSNVYAIFKRWDEA-RTTREAMET 427 (440)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 427 (440)
.++..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3567788888888888888 666766543
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.96 E-value=1.4e-08 Score=83.87 Aligned_cols=122 Identities=11% Similarity=-0.103 Sum_probs=59.2
Q ss_pred HHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCcc----HhHHHHHHHHHHhcCCh
Q 039362 306 SACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPT----ASMLGSLLTGCMNHGKL 381 (440)
Q Consensus 306 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~ 381 (440)
..+...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+.....|+ ...+..+..++...|++
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence 34444555555555555554432 3222333344455555555555555554422221 12344455555555555
Q ss_pred hHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 382 DLAEIVGKKLVELQ--PD-HDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 382 ~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
++|+..|+++.... |. .+......+.++.+.|+.++|..+|+++....
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55555555554321 11 12244455555555555555555555555543
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.95 E-value=6.1e-09 Score=76.23 Aligned_cols=107 Identities=11% Similarity=0.020 Sum_probs=64.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHh
Q 039362 300 TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMN 377 (440)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~ 377 (440)
.+......+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45556666666666666666666666643 124455666666666666666666666665 3333 34556666666666
Q ss_pred cCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 039362 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSN 407 (440)
Q Consensus 378 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 407 (440)
.|++++|+..|+++++++|.++.++..+..
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 666666666666666666666655554443
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.94 E-value=1.4e-08 Score=78.37 Aligned_cols=127 Identities=13% Similarity=0.000 Sum_probs=88.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHh
Q 039362 300 TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMN 377 (440)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~ 377 (440)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++. ...| +...+..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34445555556666666666666665542 124455666666666777777777776665 2233 45677788888889
Q ss_pred cCChhHHHHHHHHHHhcCCCCCchHHHHHH--HHHhccChHHHHHHHHHHHh
Q 039362 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSN--VYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 378 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 427 (440)
.|++++|...++++.+..|.++..+..+.. .+...|++++|.+.+++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999888877744444 47788999999998887654
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.94 E-value=1.9e-09 Score=81.50 Aligned_cols=101 Identities=15% Similarity=0.008 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHH
Q 039362 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCM 376 (440)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~ 376 (440)
..+..+...+...|++++|+..|+++.... +.+...|..+..+|...|++++|++.|++. .+.| +...+..+..++.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344445555556666666666666655543 124444555555566666666666666555 3333 3345555555556
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCc
Q 039362 377 NHGKLDLAEIVGKKLVELQPDHDG 400 (440)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~ 400 (440)
..|++++|+..|+++++..|.++.
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCc
Confidence 666666666666666665555543
No 127
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.94 E-value=1.1e-06 Score=75.22 Aligned_cols=230 Identities=12% Similarity=0.037 Sum_probs=133.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc-C-CH
Q 039362 170 YVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG-ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC-G-AI 246 (440)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 246 (440)
..+.+..++|++++++++..+ +-+...++.--.++...| .+++++..++.++..+ +.+..+|+.-..++... + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 334455567777777777663 334444555555555566 4777777777777665 56666666666666555 5 67
Q ss_pred HHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCC----
Q 039362 247 KEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVK--------ESLELFTEMQIVGITPDEITFLGLLSACAHGGL---- 313 (440)
Q Consensus 247 ~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---- 313 (440)
++++.++.++.+..| |...|+...-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 777777777776654 5556655544444444444 7777777777764 4455666666666666654
Q ss_pred ---hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCH--------------------HHHHHHHhcC-CC-------C
Q 039362 314 ---VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQV--------------------TEAYEFICQM-PL-------E 362 (440)
Q Consensus 314 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~-~~-------~ 362 (440)
++++++.+++++... +-|...|+.+-..+.+.|+. .+..++..++ +. .
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 567777777777654 22555666665555555543 2233333333 11 1
Q ss_pred ccHhHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCchHH
Q 039362 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLV-ELQPDHDGRYV 403 (440)
Q Consensus 363 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~ 403 (440)
+....+..++..|...|+.++|.++++.+. +.+|.....|.
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 344455556666666666666666666664 34455444443
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=4.2e-08 Score=83.06 Aligned_cols=100 Identities=9% Similarity=-0.018 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 039362 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 239 (440)
...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455666666777777777777777766553 3355566666666777777777777777766654 4556666667777
Q ss_pred HHhcCCHHHHHHHHhhhhhcCC
Q 039362 240 YAKCGAIKEALIVFHGVEKHQS 261 (440)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~~ 261 (440)
|...|++++|...|++..+..|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc
Confidence 7777777777777766654433
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.91 E-value=3.2e-08 Score=81.83 Aligned_cols=195 Identities=10% Similarity=-0.046 Sum_probs=120.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhhHHHH-------HHHHHhcCCHHHHHHHHhhhhhcCCch----------------
Q 039362 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSL-------IDMYAKCGAIKEALIVFHGVEKHQSDV---------------- 263 (440)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------- 263 (440)
..++...|.+.|.++.+.. |.....|..+ ...+...++..+++..+.+..+..|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 3566666666666666655 4445555555 344444444444444444444332211
Q ss_pred ------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCC--cch
Q 039362 264 ------LIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPK--SEH 335 (440)
Q Consensus 264 ------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 335 (440)
...-.+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 12234556677778888888888776654 3443344455556777788888888887554421 111 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcC--CCC-c--cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHH
Q 039362 336 YACMVDALSRAGQVTEAYEFICQM--PLE-P--TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLS 406 (440)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~--~~~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 406 (440)
+..+..++...|++++|+..|++. +.. | ..........++.+.|+.++|..+|+++...+|. +.....|.
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 666777888888888888888877 211 4 2345667777788889999999999999888887 55555543
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=3.7e-07 Score=77.81 Aligned_cols=126 Identities=14% Similarity=0.133 Sum_probs=59.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----hhhHHHHHHHHHhcCCHHHHHHHHhhhhhc-------CC-chhhHH
Q 039362 201 VLCACAHLGALDQGRMMLRYMIDKGLS-LT----LPLQTSLIDMYAKCGAIKEALIVFHGVEKH-------QS-DVLIWN 267 (440)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~-~~~~~~ 267 (440)
+...+...+++++|...++++.+.... ++ ..+++.+..+|...|++++|...|+++.+. .+ ...++.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 333344444555555555555442211 11 113455555555555555555555554421 01 122455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCCcc-HhhHHHHHHHHHcCCC-hHHHHHHHHHHhh
Q 039362 268 AMIGGLAMHGFVKESLELFTEMQIV----GITPD-EITFLGLLSACAHGGL-VMEAWYFFKSLGK 326 (440)
Q Consensus 268 ~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 326 (440)
.+...|...|++++|...+++..+. +..+. ..++..+..++.+.|+ +++|...++++..
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5555566666666666655554332 11111 3455555556666663 4666666655543
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.89 E-value=7.5e-08 Score=70.33 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 039362 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241 (440)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 241 (440)
.+......|.+.|++++|++.|++.++.. +.+...+..+..++...|++++|+..+++.++.+ +.+...+..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 44555556666666666666666655543 3345555555556666666666666666655554 444555555555566
Q ss_pred hcCCHHHHHHHHhhhhhcCC
Q 039362 242 KCGAIKEALIVFHGVEKHQS 261 (440)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~ 261 (440)
..|++++|+..|+++.+..|
T Consensus 93 ~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHHHHCc
Confidence 66666666666655555544
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.88 E-value=2.6e-08 Score=73.60 Aligned_cols=116 Identities=13% Similarity=0.033 Sum_probs=76.7
Q ss_pred HhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHH
Q 039362 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGC 375 (440)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 375 (440)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.+++. ...| +...+..+..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3445555555666666666666666665532 123445555666666666666666666665 2223 456677777888
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 039362 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414 (440)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (440)
...|++++|...++++.+..|.+...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888887788888887776653
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.87 E-value=1.9e-08 Score=73.95 Aligned_cols=117 Identities=15% Similarity=0.026 Sum_probs=82.9
Q ss_pred HhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHH
Q 039362 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGC 375 (440)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~ 375 (440)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|.+.+++. ...| +...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3445555556666666666666666666542 124455666666667777777777777665 2233 356777888888
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccCh
Q 039362 376 MNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415 (440)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 415 (440)
...|++++|...++++.+..|.++..+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8999999999999999999998888888888888888765
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.86 E-value=2e-08 Score=87.46 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=78.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 039362 334 EHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI 411 (440)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (440)
..|..+..+|.+.|++++|+..+++. .+.| +...+..+..++...|++++|+..|+++++.+|.+..++..++.++..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 56777888888888888888888887 4444 567788899999999999999999999999999999999999999999
Q ss_pred ccChHHH-HHHHHHHHh
Q 039362 412 FKRWDEA-RTTREAMET 427 (440)
Q Consensus 412 ~g~~~~A-~~~~~~~~~ 427 (440)
.|++++| ..++++|..
T Consensus 277 ~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 277 IRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999988 456666643
No 135
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.86 E-value=4.2e-07 Score=77.78 Aligned_cols=219 Identities=9% Similarity=0.016 Sum_probs=160.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-CHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhc-C-ChHHH
Q 039362 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG-AIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMH-G-FVKES 282 (440)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~-~-~~~~a 282 (440)
+.+..++|+++++.++..+ +.+..+++.-..++...| .+++++.+++.+....| +..+|+.-...+... + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3445678999999999887 777788888778888888 59999999999998776 567788777777766 6 89999
Q ss_pred HHHHHHHHHcCCCccHhhHHHHHHHHHcCCChH--------HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC------
Q 039362 283 LELFTEMQIVGITPDEITFLGLLSACAHGGLVM--------EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQ------ 348 (440)
Q Consensus 283 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 348 (440)
+++++.+.+.. +-|...|+.-...+.+.|.++ ++++.++++++..+ -|...|+.....+.+.++
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchH
Confidence 99999998764 446667766555555555555 89999999998753 377788888888888776
Q ss_pred -HHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCCh--------------------hHHHHHHHHHHhcC------CCCC
Q 039362 349 -VTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKL--------------------DLAEIVGKKLVELQ------PDHD 399 (440)
Q Consensus 349 -~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------~~~~ 399 (440)
++++++.++++ ...| |...|+.+-..+.+.|+. .........+.... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68888888887 4555 556777766666666554 22333333333222 3455
Q ss_pred chHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 400 GRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
.++..++..|...|+.++|.++++.+.+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 57889999999999999999999998643
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.86 E-value=3.5e-08 Score=71.88 Aligned_cols=114 Identities=20% Similarity=0.174 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCC-ccHhHHHHHHHHHH
Q 039362 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLE-PTASMLGSLLTGCM 376 (440)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-p~~~~~~~l~~~~~ 376 (440)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ ... .+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344555555556666666666666655542 123445555666666666666666666665 222 24566777788888
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhcc
Q 039362 377 NHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFK 413 (440)
Q Consensus 377 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 413 (440)
..|++++|...++++.+..|.++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888888888888888888888877777777766543
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.86 E-value=1.5e-07 Score=72.45 Aligned_cols=127 Identities=10% Similarity=0.016 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 039362 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240 (440)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 240 (440)
..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555666666666666666666665543 3345555555566666666666666666665554 44455555555666
Q ss_pred HhcCCHHHHHHHHhhhhhcCCc-hhhHH--HHHHHHHhcCChHHHHHHHHHH
Q 039362 241 AKCGAIKEALIVFHGVEKHQSD-VLIWN--AMIGGLAMHGFVKESLELFTEM 289 (440)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~--~l~~~~~~~~~~~~a~~~~~~m 289 (440)
...|++++|...|+++....|+ ...+. ..+..+...|++++|+..+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666655544432 22222 2222244445555555555443
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.85 E-value=1.3e-08 Score=79.76 Aligned_cols=127 Identities=13% Similarity=0.087 Sum_probs=93.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHH-HHhcCCH--
Q 039362 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDA-LSRAGQV-- 349 (440)
Q Consensus 273 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 349 (440)
+...|++++|+..+++..... +.+...+..+...+...|++++|...|+++.+.. +.+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 346678888888888887764 4566778888888888899999999998888763 2245566777777 7788887
Q ss_pred HHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 039362 350 TEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR 401 (440)
Q Consensus 350 ~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 401 (440)
++|...++++ ...| +...+..+...+...|++++|...++++++..|.++..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 8888888887 4444 45677778888888888888888888888888887643
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.84 E-value=8e-08 Score=72.44 Aligned_cols=102 Identities=14% Similarity=0.008 Sum_probs=59.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 039362 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 239 (440)
...+..+...+.+.|++++|...|++..... +.+...+..+..++...|++++|...|++..+.. |.++..+..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3445555556666666666666666665553 3345555555666666666666666666665554 4455555556666
Q ss_pred HHhcCCHHHHHHHHhhhhhcCCch
Q 039362 240 YAKCGAIKEALIVFHGVEKHQSDV 263 (440)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~~~~ 263 (440)
|...|++++|...|+++.+..|+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCH
Confidence 666666666666666655554443
No 140
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.82 E-value=2.8e-08 Score=70.82 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=76.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCchHHHHHH
Q 039362 332 KSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD--HDGRYVGLSN 407 (440)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 407 (440)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3445566667777777777777777766 2233 4566777888888888888888888888888888 7788888888
Q ss_pred HHHhc-cChHHHHHHHHHHHhcCCc
Q 039362 408 VYAIF-KRWDEARTTREAMETRGVK 431 (440)
Q Consensus 408 ~~~~~-g~~~~A~~~~~~~~~~~~~ 431 (440)
++... |++++|.+.++++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 88888 8889998888888776543
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.82 E-value=7.1e-07 Score=76.06 Aligned_cols=164 Identities=13% Similarity=0.059 Sum_probs=95.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---Cc--hh
Q 039362 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANE-----VTLVSVLCACAHLGALDQGRMMLRYMIDKGLS---LT--LP 231 (440)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 231 (440)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566777788888888887776654322111 12233444556667777777777776643211 11 33
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhhhh---cCCc-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCc-cH
Q 039362 232 LQTSLIDMYAKCGAIKEALIVFHGVEK---HQSD-----VLIWNAMIGGLAMHGFVKESLELFTEMQIVG----ITP-DE 298 (440)
Q Consensus 232 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~ 298 (440)
+++.+...|...|++++|...|+++.+ ..|+ ..++..+...|...|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 566677777777777777777776652 2222 1456666667777777777777776654321 001 13
Q ss_pred hhHHHHHHHHHcCCChHHH-HHHHHHHh
Q 039362 299 ITFLGLLSACAHGGLVMEA-WYFFKSLG 325 (440)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 325 (440)
.+|..+...+.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4556666666666666666 55555544
No 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.82 E-value=2.6e-08 Score=74.69 Aligned_cols=101 Identities=13% Similarity=-0.011 Sum_probs=54.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHh
Q 039362 300 TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMN 377 (440)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~ 377 (440)
.+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|+..|++. .+.| ++..+..+..++..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34444555556666666666666665543 123444555555556666666666666555 2223 23445555555556
Q ss_pred cCChhHHHHHHHHHHhcCCCCCch
Q 039362 378 HGKLDLAEIVGKKLVELQPDHDGR 401 (440)
Q Consensus 378 ~g~~~~a~~~~~~~~~~~~~~~~~ 401 (440)
.|++++|+..|+++++..|.++..
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred cCCHHHHHHHHHHHHHhCCCCcch
Confidence 666666666666666555555433
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.81 E-value=9.3e-08 Score=76.52 Aligned_cols=148 Identities=11% Similarity=0.043 Sum_probs=64.0
Q ss_pred cCChHHHHH---HHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCChHH
Q 039362 142 CGEMNMARQ---VFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDV----GSKA-NEVTLVSVLCACAHLGALDQ 213 (440)
Q Consensus 142 ~~~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~ 213 (440)
.|++++|.+ .+..-+.....++..+...+...|++++|...+++.... +..| ....+..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 444555555 332222223444555555555566666665555554331 1111 12334444445555555555
Q ss_pred HHHHHHHHHHc----CCC--CchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc---CCc----hhhHHHHHHHHHhcCChH
Q 039362 214 GRMMLRYMIDK----GLS--LTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH---QSD----VLIWNAMIGGLAMHGFVK 280 (440)
Q Consensus 214 a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~ 280 (440)
|...+++..+. +.. .....+..+..++...|++++|...+++.... ..+ ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 55555554332 100 11223444445555555555555555544321 111 112334444444455555
Q ss_pred HHHHHHHHH
Q 039362 281 ESLELFTEM 289 (440)
Q Consensus 281 ~a~~~~~~m 289 (440)
+|...+++.
T Consensus 165 ~A~~~~~~a 173 (203)
T 3gw4_A 165 EAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.80 E-value=2.7e-07 Score=66.98 Aligned_cols=99 Identities=19% Similarity=0.255 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 039362 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240 (440)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 240 (440)
..+..+...+...|++++|.+.++++.... +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344455555555555555555555554442 2234444455555555555555555555555443 33444444555555
Q ss_pred HhcCCHHHHHHHHhhhhhcCC
Q 039362 241 AKCGAIKEALIVFHGVEKHQS 261 (440)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~~ 261 (440)
...|++++|...|+++....|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhcCHHHHHHHHHHHHHhCC
Confidence 555555555555555444333
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.79 E-value=2.3e-08 Score=72.56 Aligned_cols=97 Identities=16% Similarity=-0.028 Sum_probs=83.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 039362 334 EHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI 411 (440)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (440)
..+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556777888999999999999988 4455 567888899999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHhcCC
Q 039362 412 FKRWDEARTTREAMETRGV 430 (440)
Q Consensus 412 ~g~~~~A~~~~~~~~~~~~ 430 (440)
.|++++|...+++.++...
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999887543
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.78 E-value=2.7e-07 Score=67.69 Aligned_cols=117 Identities=9% Similarity=-0.023 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 039362 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 239 (440)
...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...++...+.. +.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555556666666666666666655542 2344455555555566666666666666655543 3344555555555
Q ss_pred HHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCC
Q 039362 240 YAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGF 278 (440)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 278 (440)
+...|++++|...|++..+..| +...+..+...+...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 5555555555555555554444 33344444444444443
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.78 E-value=7.3e-08 Score=72.72 Aligned_cols=94 Identities=12% Similarity=-0.006 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHc
Q 039362 232 LQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310 (440)
Q Consensus 232 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 310 (440)
.+..+...+...|++++|+..|+++....| +...|..+..++...|++++|+..|++..... +.+...+..+..++..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 333344444444444444444444443333 33344444444444444444444444444332 2223344444444444
Q ss_pred CCChHHHHHHHHHHhh
Q 039362 311 GGLVMEAWYFFKSLGK 326 (440)
Q Consensus 311 ~~~~~~a~~~~~~~~~ 326 (440)
.|++++|...|++..+
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444444
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.78 E-value=2.6e-07 Score=68.04 Aligned_cols=100 Identities=11% Similarity=0.015 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 039362 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDM 239 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 239 (440)
...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3445555555556666666666666555442 2244455555555555556666665555555543 3344555555555
Q ss_pred HHhcCCHHHHHHHHhhhhhcCC
Q 039362 240 YAKCGAIKEALIVFHGVEKHQS 261 (440)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~~ 261 (440)
+...|++++|...|++..+..|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHhhHHHHHHHHHHHHHhCC
Confidence 5555555555555555554443
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.78 E-value=3.6e-08 Score=72.17 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 039362 337 ACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414 (440)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (440)
..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..++.++...|+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence 33444444455555555554444 2222 234455555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHhc
Q 039362 415 WDEARTTREAMETR 428 (440)
Q Consensus 415 ~~~A~~~~~~~~~~ 428 (440)
+++|.+.+++..+.
T Consensus 88 ~~~A~~~~~~al~~ 101 (126)
T 3upv_A 88 YASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555443
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.77 E-value=3.1e-06 Score=72.11 Aligned_cols=193 Identities=8% Similarity=-0.063 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC--CHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCC-hHHHHHHH
Q 039362 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG--AIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGF-VKESLELF 286 (440)
Q Consensus 211 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~-~~~a~~~~ 286 (440)
++++..+++.+...+ |.+..+|+.-..++...| .+++++.++.++.+..| |...|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455666666666554 555566655555555555 36666666666665544 45556555555555565 46666666
Q ss_pred HHHHHcCCCccHhhHHHHHHHHHcC--------------CChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc------
Q 039362 287 TEMQIVGITPDEITFLGLLSACAHG--------------GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA------ 346 (440)
Q Consensus 287 ~~m~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 346 (440)
..+.+.. +-|...|+.....+.+. +.++++++.+...+... +-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 6666654 33444454444333322 33556666666666543 12444454443333333
Q ss_pred -----CCHHHHHHHHhcC-CCCccHhHHHHHHH-----HHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 039362 347 -----GQVTEAYEFICQM-PLEPTASMLGSLLT-----GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSN 407 (440)
Q Consensus 347 -----~~~~~a~~~~~~~-~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 407 (440)
+.++++++.++++ ...|+. .|..+.. .....|..++....+.++++++|....-|..+..
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 2345555555555 344443 2221111 1123455566666677777776666555554443
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.77 E-value=1.2e-07 Score=74.11 Aligned_cols=116 Identities=8% Similarity=0.030 Sum_probs=48.7
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHH-HHhcCCh--HHHHH
Q 039362 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGG-LAMHGFV--KESLE 284 (440)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~-~~~~~~~--~~a~~ 284 (440)
|++++|...++...+.. +.+...+..+..+|...|++++|...|+++....| +...+..+... +...|++ ++|..
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34444444444444333 33334444444444444444444444444443322 23333334444 3344444 44444
Q ss_pred HHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhh
Q 039362 285 LFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326 (440)
Q Consensus 285 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 326 (440)
.++++.+.. +.+...+..+...+...|++++|...|+++.+
T Consensus 103 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 103 MIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444432 22233344444444444555555554444444
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.76 E-value=6.4e-09 Score=83.14 Aligned_cols=173 Identities=10% Similarity=0.010 Sum_probs=97.4
Q ss_pred HHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChH
Q 039362 237 IDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315 (440)
Q Consensus 237 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 315 (440)
+......|+++++.+.+.......+ ....+..+...+...|++++|+..|++..... |+...+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHH
Confidence 3344445555555555554332222 23445555566666666666666666665432 111000000 000
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039362 316 EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393 (440)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 393 (440)
.-. .. .....+..+..+|...|++++|+..+++. ...| +...+..+..++...|++++|+..|+++++
T Consensus 81 ~~~---~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 81 DKK---KN-------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHH---HH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHH---HH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 000 00 01245667777888888888888888877 3344 557788889999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhccChHHHH-HHHHHHHhcC
Q 039362 394 LQPDHDGRYVGLSNVYAIFKRWDEAR-TTREAMETRG 429 (440)
Q Consensus 394 ~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 429 (440)
..|.++.++..+..++...|+.+++. ..+..+...+
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999998888887 5566665543
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.75 E-value=2.9e-08 Score=72.69 Aligned_cols=91 Identities=11% Similarity=0.030 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc-------hHHHHHH
Q 039362 337 ACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG-------RYVGLSN 407 (440)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~ 407 (440)
..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|.+.. +|..++.
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 33444444555555555555444 2233 2344455555555555555555555555555444332 3344445
Q ss_pred HHHhccChHHHHHHHHHHHh
Q 039362 408 VYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 408 ~~~~~g~~~~A~~~~~~~~~ 427 (440)
++...|++++|.+.|++.+.
T Consensus 92 ~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555544
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.74 E-value=5.5e-06 Score=70.61 Aligned_cols=214 Identities=12% Similarity=-0.006 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC----------HHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcC--Ch
Q 039362 213 QGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA----------IKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHG--FV 279 (440)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~--~~ 279 (440)
+|+..++.++..+ |.+..+|+.--.++...+. +++++.+++.+....| +..+|+.-.-.+...+ .+
T Consensus 48 eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 5666666666554 4444444433333222222 6788889988887766 6778888877777777 48
Q ss_pred HHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCC-hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc------------
Q 039362 280 KESLELFTEMQIVGITPDEITFLGLLSACAHGGL-VMEAWYFFKSLGKRGMVPKSEHYACMVDALSRA------------ 346 (440)
Q Consensus 280 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------ 346 (440)
++++..+..+.+.. +-|...|+.-...+...|. ++++++.+..+++..+ -|...|+.....+.+.
T Consensus 127 ~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 127 ARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcccccccccc
Confidence 99999999999876 5567777777777777787 5899999999998753 3667777776666655
Q ss_pred --CCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhc-----------CChhHHHHHHHHHHhcCCCCCchHHHHHHH---
Q 039362 347 --GQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNH-----------GKLDLAEIVGKKLVELQPDHDGRYVGLSNV--- 408 (440)
Q Consensus 347 --~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--- 408 (440)
+.++++++.+.+. ...| |...|+.+-..+.+. +.++++++.++++.+..|++.-.+..++..
T Consensus 205 ~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~ 284 (331)
T 3dss_A 205 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA 284 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHh
Confidence 4578888888887 4455 556676555554443 457899999999999999985444433332
Q ss_pred HHhccChHHHHHHHHHHHhcC
Q 039362 409 YAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 409 ~~~~g~~~~A~~~~~~~~~~~ 429 (440)
....|..+++...++++.+..
T Consensus 285 ~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 285 LDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HCTTTTHHHHHHHHHHHHHHC
T ss_pred hcccccHHHHHHHHHHHHHhC
Confidence 224678889999999998754
No 155
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.73 E-value=3.3e-07 Score=79.67 Aligned_cols=146 Identities=12% Similarity=0.029 Sum_probs=94.4
Q ss_pred ChHHHHHHHhhCCC--C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHH
Q 039362 144 EMNMARQVFELMPE--R-NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN--------------EVTLVSVLCACA 206 (440)
Q Consensus 144 ~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~ 206 (440)
++++|...++...+ | +...+..+...+.+.|++++|+..|++......... ...+..+..++.
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444332 2 455777888888888999999999988877632211 356666667777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHH-HH
Q 039362 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKES-LE 284 (440)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a-~~ 284 (440)
+.|++++|...++++++.. +.+...+..+..+|...|++++|+..|+++.+..| +...+..+...+...|+.++| ..
T Consensus 208 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776665 55666666777777777777777777777666655 345566666666666666666 33
Q ss_pred HHHHHH
Q 039362 285 LFTEMQ 290 (440)
Q Consensus 285 ~~~~m~ 290 (440)
.++.|.
T Consensus 287 ~~~~~~ 292 (336)
T 1p5q_A 287 LYANMF 292 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.72 E-value=5.3e-07 Score=72.06 Aligned_cols=159 Identities=14% Similarity=0.027 Sum_probs=96.8
Q ss_pred chhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhh
Q 039362 75 RLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFEL 154 (440)
Q Consensus 75 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 154 (440)
..|++++|.+.++.+.. .+.....++..+...+...|++++|...+++.. +++..
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------------------------~~~~~ 58 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQ------------------------QQAQK 58 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHT
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH------------------------HHHHH
Confidence 45666666664443332 222344555556666666666666655543322 11111
Q ss_pred CCC--CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 039362 155 MPE--RNVVSWSALIDGYVKCGDYKEALVIFEEMRDV----GSKA--NEVTLVSVLCACAHLGALDQGRMMLRYMIDKGL 226 (440)
Q Consensus 155 ~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 226 (440)
... ....++..+...+...|++++|...+++.... +..| ....+..+...+...|++++|...+++..+...
T Consensus 59 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 59 SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 111 13456777788888888888888888876543 2111 234566777788888999999988888764311
Q ss_pred ---CCc--hhhHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 039362 227 ---SLT--LPLQTSLIDMYAKCGAIKEALIVFHGVEK 258 (440)
Q Consensus 227 ---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 258 (440)
.+. ..++..+..++...|++++|...+++...
T Consensus 139 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 139 QADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 111 23457788889999999999999887763
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.71 E-value=1e-07 Score=70.84 Aligned_cols=100 Identities=12% Similarity=-0.087 Sum_probs=53.8
Q ss_pred cHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHH
Q 039362 297 DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTG 374 (440)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~ 374 (440)
+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++. ...| +...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34455555556666666666666666655543 113444555555555555555555555554 2223 23445555555
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC
Q 039362 375 CMNHGKLDLAEIVGKKLVELQPD 397 (440)
Q Consensus 375 ~~~~g~~~~a~~~~~~~~~~~~~ 397 (440)
+...|++++|+..++++++..|.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 55555555555555555555544
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.70 E-value=4.1e-07 Score=68.06 Aligned_cols=99 Identities=13% Similarity=0.067 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 039362 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240 (440)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 240 (440)
..+..+...+.+.|++++|...|++....+ +.+...+..+..++...|++++|...++...+.. +.++..+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 345555666677777777777777766653 3455566666666777777777777777776665 55566666667777
Q ss_pred HhcCCHHHHHHHHhhhhhcCC
Q 039362 241 AKCGAIKEALIVFHGVEKHQS 261 (440)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~~ 261 (440)
...|++++|...|+.+....|
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC
Confidence 777777777777776665544
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.70 E-value=6.5e-08 Score=74.56 Aligned_cols=110 Identities=13% Similarity=-0.005 Sum_probs=93.5
Q ss_pred ccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHH
Q 039362 296 PDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLT 373 (440)
Q Consensus 296 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~ 373 (440)
.+...+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++. .+.| +...|..+..
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345678888889999999999999999999864 226678889999999999999999999988 4455 4678889999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCchHHHHH
Q 039362 374 GCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLS 406 (440)
Q Consensus 374 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 406 (440)
++...|++++|+..|+++++.+|.++..+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999988654443
No 160
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.70 E-value=4.8e-07 Score=81.92 Aligned_cols=162 Identities=6% Similarity=-0.183 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCccH----hhHHHHHHHHHcCCChHHHHHHHHHHhhc----CCCC-Ccch
Q 039362 266 WNAMIGGLAMHGFVKESLELFTEMQIVG-ITPDE----ITFLGLLSACAHGGLVMEAWYFFKSLGKR----GMVP-KSEH 335 (440)
Q Consensus 266 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 335 (440)
+..++..|...|++++|.+.+..+...- ..++. .+.+.+...+...|+++.+..++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3444555555555555555555443210 01111 11122222223445566666665554432 1111 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcC-----C--CCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCC----c
Q 039362 336 YACMVDALSRAGQVTEAYEFICQM-----P--LEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ---PDHD----G 400 (440)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~----~ 400 (440)
+..+...|...|++++|..++++. + -+| ...++..++..|...|++++|..+++++.... +.++ .
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 455666666666666666666554 1 112 23456666666777777777777777666543 1111 2
Q ss_pred hHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 401 RYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 401 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555666666777777666655543
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.6e-07 Score=70.77 Aligned_cols=108 Identities=12% Similarity=-0.058 Sum_probs=57.3
Q ss_pred HhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHH
Q 039362 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPK----SEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSL 371 (440)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l 371 (440)
...+..+...+...|++++|...|++..+.. |+ ...+..+...|...|++++|...+++. ...| +...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3445555555566666666666666665532 33 344555555555555555555555554 2223 33445555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 039362 372 LTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSN 407 (440)
Q Consensus 372 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 407 (440)
..++...|++++|...++++++.+|.++..+..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 555555555555555555555555555444444333
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.69 E-value=7.3e-08 Score=76.90 Aligned_cols=120 Identities=10% Similarity=-0.028 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039362 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN---------------EVTLVSVLCACAHLGALDQGRMMLRYMIDK 224 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (440)
...+..+...+...|++++|+..|++......... ...+..+..++...|++++|...++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455666677777777777777777765421100 134445555555555666665555555554
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChH
Q 039362 225 GLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVK 280 (440)
Q Consensus 225 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 280 (440)
. +.+...+..+..+|...|++++|...|++.....| +...+..+...+...++..
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 3 34445555555555555555555555555554444 2333444444444333333
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=2.8e-07 Score=66.15 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=59.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHh
Q 039362 300 TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMN 377 (440)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~ 377 (440)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++. ...| +...+..+..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444455555555555555555555432 113444455555555555555555555554 2223 34555566666666
Q ss_pred cCChhHHHHHHHHHHhcCCCCCchHHHHHHH
Q 039362 378 HGKLDLAEIVGKKLVELQPDHDGRYVGLSNV 408 (440)
Q Consensus 378 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 408 (440)
.|++++|...++++.+.+|.++..+..+..+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6777777777777776666665555544443
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=8.6e-07 Score=64.67 Aligned_cols=96 Identities=13% Similarity=0.036 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 039362 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYA 241 (440)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 241 (440)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34445555555666666666665555442 3344455555555555555555555555555544 344445555555555
Q ss_pred hcCCHHHHHHHHhhhhhc
Q 039362 242 KCGAIKEALIVFHGVEKH 259 (440)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~ 259 (440)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 555555555555555443
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.67 E-value=6.6e-07 Score=65.37 Aligned_cols=24 Identities=4% Similarity=-0.027 Sum_probs=11.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 039362 268 AMIGGLAMHGFVKESLELFTEMQI 291 (440)
Q Consensus 268 ~l~~~~~~~~~~~~a~~~~~~m~~ 291 (440)
.+..++...|++++|++.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444445555544444443
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.65 E-value=1.2e-07 Score=69.58 Aligned_cols=98 Identities=16% Similarity=0.074 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhhcCCCCCc----chHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc----HhHHHHHH
Q 039362 302 LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS----EHYACMVDALSRAGQVTEAYEFICQM-PLEPT----ASMLGSLL 372 (440)
Q Consensus 302 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~----~~~~~~l~ 372 (440)
..+...+...|++++|...|+.+.+.. |+. ..+..+..++...|++++|...+++. ...|+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 344555666777777777777776643 222 35556666677777777777777665 22332 34455666
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 039362 373 TGCMNHGKLDLAEIVGKKLVELQPDHDGR 401 (440)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 401 (440)
.++...|++++|...++++++..|.++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 66667777777777777777766665543
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.65 E-value=3.3e-07 Score=70.56 Aligned_cols=96 Identities=10% Similarity=-0.060 Sum_probs=76.5
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 039362 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341 (440)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (440)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667778888888888888888888888764 4466778888888888888888888888888864 224667788888
Q ss_pred HHHhcCCHHHHHHHHhcC
Q 039362 342 ALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~ 359 (440)
+|...|++++|.+.|++.
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 888888888888888877
No 168
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=2.5e-06 Score=61.06 Aligned_cols=99 Identities=14% Similarity=0.020 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 039362 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240 (440)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 240 (440)
..+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344455555556666666666666655442 2244455555555555566666666655555543 33444555555555
Q ss_pred HhcCCHHHHHHHHhhhhhcCC
Q 039362 241 AKCGAIKEALIVFHGVEKHQS 261 (440)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~~ 261 (440)
...|++++|...+++..+..|
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 555555555555555554433
No 169
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.62 E-value=1.2e-07 Score=70.77 Aligned_cols=106 Identities=12% Similarity=-0.086 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCc-cHhHHHHHHHHHHhcC
Q 039362 301 FLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEP-TASMLGSLLTGCMNHG 379 (440)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p-~~~~~~~l~~~~~~~g 379 (440)
+......+.+.|++++|+..|++.++.. |+...- +.....| +...|..+..++.+.|
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~--------------------~a~~~~~~~a~a~~n~g~al~~Lg 71 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPE--------------------EAFDHAGFDAFCHAGLAEALAGLR 71 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTT--------------------SCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcch--------------------hhhhhccchHHHHHHHHHHHHHCC
Confidence 4445555566677777777777766642 221000 0000000 2236777777777777
Q ss_pred ChhHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 380 KLDLAEIVGKKLVEL-------QPDHDGRY----VGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 380 ~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
++++|+..++++++. +|++...| ...+.++...|++++|+..|++.++.
T Consensus 72 r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 72 SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 777777777777777 77777777 77777888888888888887777664
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=6e-07 Score=67.50 Aligned_cols=98 Identities=17% Similarity=0.080 Sum_probs=62.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCcc----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHH
Q 039362 332 KSEHYACMVDALSRAGQVTEAYEFICQM-PLEPT----ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLS 406 (440)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 406 (440)
+...+..+...+...|++++|.+.|++. ...|+ ...+..+..++...|++++|+..++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3444555666666666666666666665 44454 455566666666666666666666666666666666666666
Q ss_pred HHHHhccChHHHHHHHHHHHhcC
Q 039362 407 NVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
.++...|++++|...+++..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 66666666666666666666543
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.60 E-value=9.2e-07 Score=62.71 Aligned_cols=100 Identities=14% Similarity=0.041 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--chhhHHHHH
Q 039362 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSL--TLPLQTSLI 237 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 237 (440)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3344455555566666666666666655543 2344455555555555666666666666555543 33 445555555
Q ss_pred HHHHhc-CCHHHHHHHHhhhhhcCC
Q 039362 238 DMYAKC-GAIKEALIVFHGVEKHQS 261 (440)
Q Consensus 238 ~~~~~~-g~~~~A~~~~~~~~~~~~ 261 (440)
.++... |++++|.+.++.+....|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 555555 555555555555554433
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.59 E-value=7.5e-07 Score=65.24 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-------hhhHH
Q 039362 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT-------LPLQT 234 (440)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~ 234 (440)
.+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++.+.+.. +.+ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHHH
Confidence 34445555555556666655555555442 2334444455555555555555555555554432 111 33344
Q ss_pred HHHHHHHhcCCHHHHHHHHhhhhhcCCc
Q 039362 235 SLIDMYAKCGAIKEALIVFHGVEKHQSD 262 (440)
Q Consensus 235 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 262 (440)
.+..+|...|++++|...|+++.+..|+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 4444444444444444444444433333
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.57 E-value=1.5e-06 Score=64.42 Aligned_cols=99 Identities=9% Similarity=-0.015 Sum_probs=55.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 039362 159 NVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLID 238 (440)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (440)
+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34455555556666666666666666655543 3344455555555556666666666666555554 344555555555
Q ss_pred HHHhcCCHHHHHHHHhhhhhc
Q 039362 239 MYAKCGAIKEALIVFHGVEKH 259 (440)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~ 259 (440)
+|...|++++|...|+++...
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 555555555555555555443
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.57 E-value=8.2e-08 Score=69.17 Aligned_cols=61 Identities=18% Similarity=0.068 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 367 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
.+..+..++...|++++|+..++++++.+|.++.++..++.++...|++++|.+.+++.+.
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444444444443
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.56 E-value=4.5e-07 Score=82.43 Aligned_cols=94 Identities=14% Similarity=0.056 Sum_probs=73.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 039362 333 SEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYA 410 (440)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (440)
...|..+..+|.+.|++++|+..++++ .+.| +...|..+..++...|++++|+..|+++++++|.+..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 356777888888889999998888887 4444 55778888999999999999999999999999999999999999999
Q ss_pred hccChHHHHH-HHHHHH
Q 039362 411 IFKRWDEART-TREAME 426 (440)
Q Consensus 411 ~~g~~~~A~~-~~~~~~ 426 (440)
+.|++++|.+ .+++|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9998887764 444443
No 176
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.55 E-value=6.2e-06 Score=76.73 Aligned_cols=171 Identities=10% Similarity=-0.068 Sum_probs=125.4
Q ss_pred CHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCC-
Q 039362 245 AIKEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGF----------VKESLELFTEMQIVGITPDEITFLGLLSACAHGG- 312 (440)
Q Consensus 245 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~- 312 (440)
..++|++.++.+....|+ ...|+.-...+...|+ ++++++.++.+.+.. +-+..+|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 345667777777766663 4556665555555555 778888888887764 445566776666777777
Q ss_pred -ChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC-CHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhc----------
Q 039362 313 -LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG-QVTEAYEFICQM-PLEP-TASMLGSLLTGCMNH---------- 378 (440)
Q Consensus 313 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------- 378 (440)
+++++++.++++.+... -+...|+.....+.+.| .++++++.++++ ...| +...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 56888888888888652 26667777777777777 788888888887 5555 456676666665542
Q ss_pred ----CChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHH
Q 039362 379 ----GKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDE 417 (440)
Q Consensus 379 ----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 417 (440)
+.++++++.+++++..+|.+..+|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999888655
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.54 E-value=1.2e-06 Score=63.41 Aligned_cols=95 Identities=13% Similarity=-0.051 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 039362 163 WSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242 (440)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 242 (440)
+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344445555555555555555555442 2244444555555555555555555555555544 3344455555555555
Q ss_pred cCCHHHHHHHHhhhhhc
Q 039362 243 CGAIKEALIVFHGVEKH 259 (440)
Q Consensus 243 ~g~~~~A~~~~~~~~~~ 259 (440)
.|++++|+..|+++.+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555433
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.53 E-value=1.5e-06 Score=63.52 Aligned_cols=96 Identities=5% Similarity=-0.003 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc--------hhhHH
Q 039362 196 VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD--------VLIWN 267 (440)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~ 267 (440)
..+..+...+...|++++|...++...+.. +.+...+..+..+|...|++++|...++++....|+ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666667777777777777776654 455666666777777777777777777766544331 44556
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 039362 268 AMIGGLAMHGFVKESLELFTEMQIV 292 (440)
Q Consensus 268 ~l~~~~~~~~~~~~a~~~~~~m~~~ 292 (440)
.+...+...|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666666666666666666654
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.52 E-value=2.5e-07 Score=70.79 Aligned_cols=63 Identities=16% Similarity=0.009 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------CCchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPD------HDGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
..+..+...+...|++++|...++++.+..+. ....+..++.++...|++++|.+.+++..+.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45566677777788888888888877765321 1235677888888888888888888877653
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.51 E-value=3.8e-07 Score=70.03 Aligned_cols=102 Identities=21% Similarity=0.039 Sum_probs=64.0
Q ss_pred HhhHHHHHHHHHcCCChHHHHHHHHHHhhcC------CCC-----------CcchHHHHHHHHHhcCCHHHHHHHHhcC-
Q 039362 298 EITFLGLLSACAHGGLVMEAWYFFKSLGKRG------MVP-----------KSEHYACMVDALSRAGQVTEAYEFICQM- 359 (440)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~- 359 (440)
...+......+.+.|++++|+..|.+.+..- -.| +...|..+..+|.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3456677778888888888888888877640 011 1234555666666666666666666665
Q ss_pred CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039362 360 PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHD 399 (440)
Q Consensus 360 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 399 (440)
.+.| +...|..+..++...|++++|...|+++++++|.++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 3333 345556666666666666666666666666666655
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.49 E-value=3.1e-07 Score=83.83 Aligned_cols=117 Identities=14% Similarity=0.017 Sum_probs=89.8
Q ss_pred HHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhH
Q 039362 306 SACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDL 383 (440)
Q Consensus 306 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 383 (440)
..+.+.|++++|+..++++.+.. +.+...+..+..+|.+.|++++|++.+++. .+.| +...+..+..++...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34556778888888888777753 224566777888888888888888888877 4455 45778888899999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHH--HHhccChHHHHHHHH
Q 039362 384 AEIVGKKLVELQPDHDGRYVGLSNV--YAIFKRWDEARTTRE 423 (440)
Q Consensus 384 a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 423 (440)
|+..++++++.+|.+...+..++.+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999888888887 888899999999887
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=7.4e-06 Score=74.04 Aligned_cols=193 Identities=11% Similarity=0.043 Sum_probs=97.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc
Q 039362 167 IDGYVKCGDYKEALVIFEEMRDVGSKANE----------------VTLVSVLCACAHLGALDQGRMMLRYMIDKGLS-LT 229 (440)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 229 (440)
...+.+.|++++|++.|..+.+....... ..+..+...|...|++++|.+.+..+.+..-. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567778888888888887665322111 12455666666666666666666665432101 11
Q ss_pred h----hhHHHHHHHHHhcCCHHHHHHHHhhhhhc---C---C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--C--
Q 039362 230 L----PLQTSLIDMYAKCGAIKEALIVFHGVEKH---Q---S-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVG--I-- 294 (440)
Q Consensus 230 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~-- 294 (440)
. .+.+.+...+...|+++.|..++...... . + ...++..+...+...|++++|..+++++...- .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12222333334455666666666554422 0 1 12344555666666666666666666554321 0
Q ss_pred Cc-cHhhHHHHHHHHHcCCChHHHHHHHHHHhhc--CC-CC-C--cchHHHHHHHHHhcCCHHHHHHHHhcC
Q 039362 295 TP-DEITFLGLLSACAHGGLVMEAWYFFKSLGKR--GM-VP-K--SEHYACMVDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 295 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (440)
.| ...++..++..|...|++++|..++++.... .. .| . ...+..+...+...|++++|...+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11 1234555555666666666666666555432 11 11 0 122334444445555555555555443
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.46 E-value=7.9e-06 Score=59.64 Aligned_cols=96 Identities=13% Similarity=0.011 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---hhhHHHHHH
Q 039362 165 ALIDGYVKCGDYKEALVIFEEMRDVGSKANE---VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT---LPLQTSLID 238 (440)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 238 (440)
.+...+...|++++|...|+++.... +.+. ..+..+..++...|++++|...++.+.+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 34455556666666666666655542 1111 244445555556666666666666655543 222 344455555
Q ss_pred HHHhcCCHHHHHHHHhhhhhcCCc
Q 039362 239 MYAKCGAIKEALIVFHGVEKHQSD 262 (440)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~~~~ 262 (440)
++...|++++|...|+.+....|+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC
Confidence 555555555555555555544443
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.45 E-value=2.8e-07 Score=80.22 Aligned_cols=150 Identities=11% Similarity=-0.011 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 039362 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDA 342 (440)
Q Consensus 263 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (440)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345666777778888888888888887765 344331 223344444332221 1367788888
Q ss_pred HHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH-HhccChHHHH
Q 039362 343 LSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY-AIFKRWDEAR 419 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~ 419 (440)
|.+.|++++|+..+++. .+.| +...+..+..++...|++++|+..|+++++.+|.++.++..+..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4445 5678888999999999999999999999999999888888887773 4457778888
Q ss_pred HHHHHHHhcCCc
Q 039362 420 TTREAMETRGVK 431 (440)
Q Consensus 420 ~~~~~~~~~~~~ 431 (440)
..|++|......
T Consensus 320 ~~~~~~l~~~p~ 331 (338)
T 2if4_A 320 EMYKGIFKGKDE 331 (338)
T ss_dssp ------------
T ss_pred HHHHHhhCCCCC
Confidence 888888766543
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.44 E-value=9e-07 Score=77.86 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=77.6
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 039362 332 KSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVY 409 (440)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (440)
+..+|..+..+|.+.|++++|++.+++. ...| +...+..+..++...|++++|+..+++++++.|.+...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456778888899999999999999887 6666 4578888999999999999999999999999999999999999999
Q ss_pred HhccChHHHHHH
Q 039362 410 AIFKRWDEARTT 421 (440)
Q Consensus 410 ~~~g~~~~A~~~ 421 (440)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 988888877653
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.42 E-value=1.2e-06 Score=79.44 Aligned_cols=123 Identities=11% Similarity=0.010 Sum_probs=96.9
Q ss_pred HHHcCCChHHHHHHHHHHhhc---CCCCC----cchHHHHHHHHHhcCCHHHHHHHHhcC---------CCCccH-hHHH
Q 039362 307 ACAHGGLVMEAWYFFKSLGKR---GMVPK----SEHYACMVDALSRAGQVTEAYEFICQM---------PLEPTA-SMLG 369 (440)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~---------~~~p~~-~~~~ 369 (440)
.+...|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|..++++. ...|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355778999999888887654 11222 345788889999999999998888875 245554 6788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh-----cCCCCCch---HHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 370 SLLTGCMNHGKLDLAEIVGKKLVE-----LQPDHDGR---YVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 370 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
.|...|...|++++|+.+++++++ ++|++|.+ ...+..++...|++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 46777764 4577788888999999999999998753
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.39 E-value=7.2e-06 Score=62.77 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CC----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039362 160 VVSWSALIDGYVKCGDYKEALVIFEEMRDV-------GS----------KANEVTLVSVLCACAHLGALDQGRMMLRYMI 222 (440)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (440)
...+......+.+.|++++|+..|.+.... .. +.+...+..+..++.+.|++++|...++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666677777888888888888776543 00 1112334444445555555555555555555
Q ss_pred HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC
Q 039362 223 DKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS 261 (440)
Q Consensus 223 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 261 (440)
+.. +.+...+..+..+|...|++++|...|++.....|
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 443 34444444555555555555555555555444444
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.36 E-value=2.8e-07 Score=66.34 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=61.4
Q ss_pred CCChHHHHHHHHHHhhcCC--CCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHH
Q 039362 311 GGLVMEAWYFFKSLGKRGM--VPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEI 386 (440)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 386 (440)
.|++++|+..|+++++.+. +.+...+..+...|...|++++|+..+++. ...| +...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4666777777777766421 123455667777777777777777777776 3334 35667778888888888888888
Q ss_pred HHHHHHhcCCCCCch
Q 039362 387 VGKKLVELQPDHDGR 401 (440)
Q Consensus 387 ~~~~~~~~~~~~~~~ 401 (440)
.++++++..|.++..
T Consensus 83 ~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 83 LLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 888888888877654
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.34 E-value=7.8e-06 Score=74.29 Aligned_cols=139 Identities=9% Similarity=-0.028 Sum_probs=77.1
Q ss_pred ChHHHHHHHhhCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHH
Q 039362 144 EMNMARQVFELMPE---RNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKAN--------------EVTLVSVLCACA 206 (440)
Q Consensus 144 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~ 206 (440)
++++|...|+...+ .....|..+...+.+.|++++|+..|++..+...... ...|..+..++.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443332 2345677788888889999999999888876421111 344555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHH
Q 039362 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESL 283 (440)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 283 (440)
+.|++++|...++++++.. +.+...+..+..+|...|++++|+..|+++.+..| +...+..+..++.+.++.+++.
T Consensus 329 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666555554 44455555555555555555555555555555444 2344444545555544444443
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.33 E-value=6.1e-06 Score=62.87 Aligned_cols=62 Identities=8% Similarity=-0.067 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-cHhhHHHHHHHHHcCCChHHHHHHHHHHhh
Q 039362 265 IWNAMIGGLAMHGFVKESLELFTEMQIV----GITP-DEITFLGLLSACAHGGLVMEAWYFFKSLGK 326 (440)
Q Consensus 265 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 326 (440)
.+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444445555555555555555554322 1001 112344445555555555555555555443
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.31 E-value=1.6e-06 Score=64.68 Aligned_cols=121 Identities=15% Similarity=0.004 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 039362 263 VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDA 342 (440)
Q Consensus 263 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (440)
...+......+.+.|++++|+..|++..+.. |+...- . +. .. .+.+...|..+..+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~--------~------a~-------~~-~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPE--------E------AF-------DH-AGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTT--------S------CC-------CH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcch--------h------hh-------hh-ccchHHHHHHHHHH
Confidence 4456677788899999999999999988753 331000 0 00 00 00011244444444
Q ss_pred HHhcCCHHHHHHHHhcC--------CCCccH-hHH----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 039362 343 LSRAGQVTEAYEFICQM--------PLEPTA-SML----GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSN 407 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~~~--------~~~p~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 407 (440)
+.+.|++++|+..+++. .+.|+. ..| .....++...|++++|+..|++++++.|.+......+..
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 55555555554444443 236654 567 888999999999999999999999999998876654443
No 192
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.29 E-value=2.9e-06 Score=77.48 Aligned_cols=120 Identities=11% Similarity=0.021 Sum_probs=83.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 039362 166 LIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245 (440)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 245 (440)
+...+.+.|++++|.+.|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3445566778888888888777663 3456677777778888888888888888887765 5667777778888888888
Q ss_pred HHHHHHHHhhhhhcCCc-hhhHHHHHHH--HHhcCChHHHHHHHH
Q 039362 246 IKEALIVFHGVEKHQSD-VLIWNAMIGG--LAMHGFVKESLELFT 287 (440)
Q Consensus 246 ~~~A~~~~~~~~~~~~~-~~~~~~l~~~--~~~~~~~~~a~~~~~ 287 (440)
+++|...|+++.+..|+ ...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888887766553 4455555544 677788888888777
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.29 E-value=2.2e-07 Score=66.02 Aligned_cols=92 Identities=11% Similarity=0.006 Sum_probs=71.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CchHHH
Q 039362 333 SEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDH------DGRYVG 404 (440)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~ 404 (440)
...+..+...+...|++++|.+.+++. ...| +...+..+..++...|++++|+..++++++..|.+ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 445666777777888888888888776 3344 55778888888999999999999999999999988 667778
Q ss_pred HHHHHHhccChHHHHHHHHH
Q 039362 405 LSNVYAIFKRWDEARTTREA 424 (440)
Q Consensus 405 l~~~~~~~g~~~~A~~~~~~ 424 (440)
++.++...|++++|.+.+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 88888888888877766543
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.27 E-value=4e-06 Score=58.15 Aligned_cols=65 Identities=25% Similarity=0.223 Sum_probs=52.9
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
+...+..+...+...|++++|+..|+++++.+|.++.+|..++.+|...|++++|.+.+++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45667778888888888888888888888888888888888888888888888888888877654
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.27 E-value=1e-05 Score=71.05 Aligned_cols=136 Identities=8% Similarity=-0.041 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 039362 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240 (440)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 240 (440)
..+..+...+.+.|++++|+..|++..+.- +... .... .+...+.. +.+..++..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAKLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHHHH-HHHHHHHHHHHHHH
Confidence 346667777888888888888888776420 0000 0000 00000011 22334455555555
Q ss_pred HhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHH
Q 039362 241 AKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEA 317 (440)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 317 (440)
.+.|++++|+..++++.+..| +...+..+..+|...|++++|+..|++..+.. +.+...+..+...+...++.+++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555444 34455555555555666666666665555442 22333444444444444444444
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.25 E-value=5.3e-06 Score=72.09 Aligned_cols=145 Identities=14% Similarity=0.042 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 039362 161 VSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240 (440)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 240 (440)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+ ....+..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 34556666777777777777777776654 333221 11112222221111 012445555555
Q ss_pred HhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcc-HhhHHHHHHH-HHcCCChHHH
Q 039362 241 AKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPD-EITFLGLLSA-CAHGGLVMEA 317 (440)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~-~~~~~~~~~a 317 (440)
.+.|++++|+..++++.+..| +...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666555555555444 3445555555555666666666665555432 222 2222222222 1223444555
Q ss_pred HHHHHHHhh
Q 039362 318 WYFFKSLGK 326 (440)
Q Consensus 318 ~~~~~~~~~ 326 (440)
...|..+..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 555555544
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.19 E-value=4.7e-06 Score=59.56 Aligned_cols=81 Identities=9% Similarity=-0.035 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039362 316 EAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVE 393 (440)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 393 (440)
.|+..|+++.+.. +.+...+..+...|...|++++|...+++. ...| +...|..+..++...|++++|...|+++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555566655532 123445556666666666666666666665 3333 334555666666666666666666666666
Q ss_pred cCCC
Q 039362 394 LQPD 397 (440)
Q Consensus 394 ~~~~ 397 (440)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 5543
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.16 E-value=1.2e-06 Score=65.15 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=46.6
Q ss_pred cCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHH
Q 039362 310 HGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGK 389 (440)
Q Consensus 310 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 389 (440)
+.+.+++|...++...+.. +.+...|..+..++...++++.+...+ +.+++|+..|+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al----------------------~~~~eAi~~le 70 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK----------------------QMIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH----------------------HHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH----------------------hHHHHHHHHHH
Confidence 3445566666666666543 124455555555555555433111100 01335555555
Q ss_pred HHHhcCCCCCchHHHHHHHHHhcc-----------ChHHHHHHHHHHHhc
Q 039362 390 KLVELQPDHDGRYVGLSNVYAIFK-----------RWDEARTTREAMETR 428 (440)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~ 428 (440)
++++++|.+..+|..++.+|...| ++++|.+.|++.++.
T Consensus 71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 555555555555555555555442 455555555555443
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.14 E-value=1.5e-05 Score=53.94 Aligned_cols=73 Identities=19% Similarity=0.098 Sum_probs=61.3
Q ss_pred CccHhHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCCccCCC
Q 039362 362 EPTASMLGSLLTGCMNHGK---LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKKYPG 435 (440)
Q Consensus 362 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 435 (440)
.+++..+..+..++...++ .++|..+++++++.+|.++.....++..+.+.|++++|...|+++.+.... .|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 3466777777777764444 799999999999999999999999999999999999999999999988765 443
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.12 E-value=8.5e-06 Score=55.14 Aligned_cols=80 Identities=24% Similarity=0.256 Sum_probs=51.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhcC-CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 039362 334 EHYACMVDALSRAGQVTEAYEFICQM-PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI 411 (440)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (440)
..+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++.+.+|.++..+..++.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 34445555566666666666666655 2223 345566677777777777777777777777777777777777766655
Q ss_pred cc
Q 039362 412 FK 413 (440)
Q Consensus 412 ~g 413 (440)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 43
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.07 E-value=1.6e-05 Score=56.16 Aligned_cols=68 Identities=10% Similarity=-0.003 Sum_probs=62.8
Q ss_pred ccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 363 PTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 363 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
++...+..+...+...|++++|+..++++++..|.++..+..++.++...|++++|.+.+++.++...
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 45677888999999999999999999999999999999999999999999999999999999988654
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.02 E-value=4e-05 Score=56.64 Aligned_cols=88 Identities=14% Similarity=-0.052 Sum_probs=41.2
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHh----
Q 039362 340 VDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMN----HGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAI---- 411 (440)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 411 (440)
...|...+.+++|.++|++.-...++.....|...|.. .+++++|...|+++.+.+ ++.....++.+|..
T Consensus 32 g~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~ 109 (138)
T 1klx_A 32 SLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGV 109 (138)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCCC
Confidence 33333334444444444443111233333444444443 455555555555555442 33345555555555
Q ss_pred ccChHHHHHHHHHHHhcC
Q 039362 412 FKRWDEARTTREAMETRG 429 (440)
Q Consensus 412 ~g~~~~A~~~~~~~~~~~ 429 (440)
.+++++|.+.+++..+.|
T Consensus 110 ~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 110 VKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 455555555555555544
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.01 E-value=0.00033 Score=65.19 Aligned_cols=172 Identities=7% Similarity=-0.063 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-
Q 039362 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA----------LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG- 244 (440)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 244 (440)
.++|++.++++...+ +-+...|+.--.++...|+ ++++...++.+.+.+ +.+..+|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 345566666665543 2233334433333434444 566666666666655 555566666566666666
Q ss_pred -CHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcC----------
Q 039362 245 -AIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHG-FVKESLELFTEMQIVGITPDEITFLGLLSACAHG---------- 311 (440)
Q Consensus 245 -~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---------- 311 (440)
++++++..++++.+..| +...|+...-.+.+.| .++++++.++++.+.. +-|...|......+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 55666666666665544 4555666555555666 6666666666665543 33444555444444331
Q ss_pred ----CChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 039362 312 ----GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTE 351 (440)
Q Consensus 312 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (440)
+.++++.+.+.+++... +-+...|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45678888888888754 2266777777777777776444
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=5.3e-05 Score=68.82 Aligned_cols=123 Identities=9% Similarity=-0.029 Sum_probs=81.1
Q ss_pred HHhcCChHHHHHHHHHHHHcC-------CCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhc--------CCc-hhhHHH
Q 039362 205 CAHLGALDQGRMMLRYMIDKG-------LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKH--------QSD-VLIWNA 268 (440)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~-~~~~~~ 268 (440)
+...|++++|..++++.++.. .+....+++.|..+|...|++++|..++++.... .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456788888888887765431 1123456777888888888888888888776533 232 346777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH-----cC-CCccH-hhHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 039362 269 MIGGLAMHGFVKESLELFTEMQI-----VG-ITPDE-ITFLGLLSACAHGGLVMEAWYFFKSLGKR 327 (440)
Q Consensus 269 l~~~~~~~~~~~~a~~~~~~m~~-----~~-~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 327 (440)
|...|...|++++|+.++++..+ .| -.|+. .+...+..++...+.+++|+.+|.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877643 12 11222 23455556666777778888887777653
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.91 E-value=0.00011 Score=54.24 Aligned_cols=112 Identities=7% Similarity=-0.089 Sum_probs=80.2
Q ss_pred CChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh----cCCHHHH
Q 039362 277 GFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSR----AGQVTEA 352 (440)
Q Consensus 277 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 352 (440)
+++++|++.|++..+.| .|+.. +...|...+..++|...|++..+.| +......|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677888888877776 33333 5556666677777888888887754 55666677777777 7788888
Q ss_pred HHHHhcCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCC
Q 039362 353 YEFICQMPLEPTASMLGSLLTGCMN----HGKLDLAEIVGKKLVELQP 396 (440)
Q Consensus 353 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 396 (440)
.++|++.-...++.....|...|.. .+++++|...|+++.+.+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888877222456666777777777 7888889988888888764
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.90 E-value=5.5e-05 Score=56.30 Aligned_cols=92 Identities=9% Similarity=-0.044 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 039362 173 CGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGAL----------DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK 242 (440)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 242 (440)
.+.+++|.+.++...+.. +.+...+..+..++...+++ ++|+..|++.++.+ |.+..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 344566666666665553 33555555555555555443 36666666666554 4455555556666655
Q ss_pred cC-----------CHHHHHHHHhhhhhcCCchhhH
Q 039362 243 CG-----------AIKEALIVFHGVEKHQSDVLIW 266 (440)
Q Consensus 243 ~g-----------~~~~A~~~~~~~~~~~~~~~~~ 266 (440)
.| ++++|+..|++..+..|+...|
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 43 5555555555555555554433
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.86 E-value=4.8e-05 Score=67.90 Aligned_cols=83 Identities=11% Similarity=0.064 Sum_probs=62.7
Q ss_pred hcCCHHHHHHHHhcC---------CCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCCc---hHHHHH
Q 039362 345 RAGQVTEAYEFICQM---------PLEPTA-SMLGSLLTGCMNHGKLDLAEIVGKKLVE-----LQPDHDG---RYVGLS 406 (440)
Q Consensus 345 ~~~~~~~a~~~~~~~---------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~ 406 (440)
..|++++|..++++. ...|+. .+++.++.+|...|++++|+.+++++++ .+|.+|. .++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346677777766654 233443 6788888889899999999999988876 3566665 577888
Q ss_pred HHHHhccChHHHHHHHHHHHh
Q 039362 407 NVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~~~~ 427 (440)
.+|..+|++++|..++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 899999999999999888765
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.86 E-value=0.00028 Score=47.36 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039362 162 SWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK 224 (440)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (440)
.+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444445555555555555555544432 223334444444444455555555555544443
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.84 E-value=0.00025 Score=50.29 Aligned_cols=78 Identities=15% Similarity=-0.022 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 039362 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEK 258 (440)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 258 (440)
|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+|...|++++|...|++...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455544432 2344455555555555566666666666555544 34445555555556666666666665555543
No 210
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.83 E-value=1.1e-06 Score=76.65 Aligned_cols=238 Identities=11% Similarity=0.125 Sum_probs=156.3
Q ss_pred hHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039362 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHM 107 (440)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (440)
+..|..|..+....+...+|++.|=+ .-|+..|..++.++.+.|.+++-.+.+.-.++..- ++.+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 35688899999999999988886522 23677789999999999999999998877666532 44455688999
Q ss_pred HHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC------------------------CchhhH
Q 039362 108 YGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVFELMPE------------------------RNVVSW 163 (440)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~ 163 (440)
|++.+++.+-.+++. .+|.........-|...|.++.|.-+|..+.. .++.+|
T Consensus 126 yAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp HHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred HHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 999998766444332 35555666777778888888888877776642 367789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 039362 164 SALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKC 243 (440)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 243 (440)
-.+-.+|...+.+.-|.-.--.++-. |+ ....++..|...|.+++.+.+++.-.... .....+|+.|.-.|++-
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc
Confidence 99888998888887775554444321 11 12234555666777777777776665332 45566666666666654
Q ss_pred CCHHHHHHHHhhhhhc--CC-------chhhHHHHHHHHHhcCChHHHH
Q 039362 244 GAIKEALIVFHGVEKH--QS-------DVLIWNAMIGGLAMHGFVKESL 283 (440)
Q Consensus 244 g~~~~A~~~~~~~~~~--~~-------~~~~~~~l~~~~~~~~~~~~a~ 283 (440)
++++.++.++..... -| ....|..++-.|.+-.+++.|.
T Consensus 277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 344444444332211 11 3345666666666666666554
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.77 E-value=5.6e-05 Score=52.01 Aligned_cols=80 Identities=15% Similarity=0.094 Sum_probs=60.1
Q ss_pred HHHHHHhcCCHHHHHHHHhcC-CCCc-cHh-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccCh
Q 039362 339 MVDALSRAGQVTEAYEFICQM-PLEP-TAS-MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRW 415 (440)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 415 (440)
....+...|++++|.+.+++. ...| +.. .+..+..++...|++++|+..|+++++.+|.++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677888888888888887 4445 446 77888888899999999999999999999988766532 455
Q ss_pred HHHHHHHHHHH
Q 039362 416 DEARTTREAME 426 (440)
Q Consensus 416 ~~A~~~~~~~~ 426 (440)
.++...+++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 66666665443
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.72 E-value=0.00014 Score=64.98 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=49.8
Q ss_pred HHhcCCHHHHHHHHhcC---------CCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCCc---hHHH
Q 039362 343 LSRAGQVTEAYEFICQM---------PLEPT-ASMLGSLLTGCMNHGKLDLAEIVGKKLVE-----LQPDHDG---RYVG 404 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~~~~ 404 (440)
+.+.|++++|++++++. ...|+ ..+++.++.+|...|++++|+.+++++++ .+|.+|. .++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44555666665555443 11222 24566666666667777777777766664 2344443 3566
Q ss_pred HHHHHHhccChHHHHHHHHHHHh
Q 039362 405 LSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 405 l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
++..|...|++++|..++++..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 66677777777777777666654
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.68 E-value=0.00036 Score=48.05 Aligned_cols=60 Identities=7% Similarity=0.038 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhh
Q 039362 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257 (440)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 257 (440)
.+..+..++...|++++|...|+++.+.. +.+...+..+..+|...|++++|...|++..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344444444444444444444444443 3333344444444444444444444444433
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.65 E-value=0.00013 Score=50.07 Aligned_cols=61 Identities=15% Similarity=0.264 Sum_probs=55.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCc-hHHHHHHHHHhccChHHHHHHHHHHHhcCC
Q 039362 370 SLLTGCMNHGKLDLAEIVGKKLVELQPDHDG-RYVGLSNVYAIFKRWDEARTTREAMETRGV 430 (440)
Q Consensus 370 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 430 (440)
..+..+...|++++|+..++++++.+|.++. .+..++.+|...|++++|.+.+++.++...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3456678899999999999999999999999 999999999999999999999999988754
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.57 E-value=0.00032 Score=62.70 Aligned_cols=99 Identities=10% Similarity=-0.012 Sum_probs=77.3
Q ss_pred HHHHHcCCChHHHHHHHHHHhhc---CCCCC----cchHHHHHHHHHhcCCHHHHHHHHhcC---------CCCccH-hH
Q 039362 305 LSACAHGGLVMEAWYFFKSLGKR---GMVPK----SEHYACMVDALSRAGQVTEAYEFICQM---------PLEPTA-SM 367 (440)
Q Consensus 305 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~---------~~~p~~-~~ 367 (440)
+..+...|++++|+.++++..+. -+.|+ ..+++.++.+|...|++++|+.++++. ...|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44556778999999999988764 12232 345788899999999999999998876 345555 66
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCCchHH
Q 039362 368 LGSLLTGCMNHGKLDLAEIVGKKLVE-----LQPDHDGRYV 403 (440)
Q Consensus 368 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 403 (440)
++.|...|...|++++|+.+++++++ .+|++|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 88999999999999999999999987 4788775543
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.57 E-value=0.00022 Score=63.70 Aligned_cols=93 Identities=13% Similarity=-0.083 Sum_probs=71.3
Q ss_pred cCCChHHHHHHHHHHhhc---CCCCC----cchHHHHHHHHHhcCCHHHHHHHHhcC---------CCCccH-hHHHHHH
Q 039362 310 HGGLVMEAWYFFKSLGKR---GMVPK----SEHYACMVDALSRAGQVTEAYEFICQM---------PLEPTA-SMLGSLL 372 (440)
Q Consensus 310 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~---------~~~p~~-~~~~~l~ 372 (440)
..|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|..++++. ...|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457888888888877653 12232 345788889999999999999888876 245655 5689999
Q ss_pred HHHHhcCChhHHHHHHHHHHh-----cCCCCCchH
Q 039362 373 TGCMNHGKLDLAEIVGKKLVE-----LQPDHDGRY 402 (440)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 402 (440)
..|...|++++|+.+++++++ .+|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999987 467776443
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.42 E-value=0.00052 Score=56.30 Aligned_cols=87 Identities=11% Similarity=0.070 Sum_probs=56.6
Q ss_pred HHHHHHHhcC-CCCcc---HhHHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-cChHHH
Q 039362 350 TEAYEFICQM-PLEPT---ASMLGSLLTGCMN-----HGKLDLAEIVGKKLVELQPDH-DGRYVGLSNVYAIF-KRWDEA 418 (440)
Q Consensus 350 ~~a~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~A 418 (440)
..|...+++. .+.|+ ...|..+...|.. -|+.++|.+.|+++++++|.. ..++..++..++.. |+.++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555554 44554 3456666666666 377777777777777777754 66777777777763 777777
Q ss_pred HHHHHHHHhcCCccCCCC
Q 039362 419 RTTREAMETRGVKKYPGW 436 (440)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~ 436 (440)
.+.+++.+.......|++
T Consensus 260 ~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 260 DEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHcCCCCCCCCh
Confidence 777777777665544553
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.41 E-value=0.0034 Score=53.87 Aligned_cols=64 Identities=13% Similarity=0.001 Sum_probs=35.0
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 039362 262 DVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKR 327 (440)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 327 (440)
+...+..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44455555444444566666666666655553 45444555555555556666666666555553
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.38 E-value=0.013 Score=57.53 Aligned_cols=100 Identities=16% Similarity=0.122 Sum_probs=46.7
Q ss_pred HhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHH
Q 039362 241 AKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYF 320 (440)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 320 (440)
...|+++.|.++.+.+. +...|..+...+.+.++++.|++.|.++.. |..+...+...|+.+...++
T Consensus 663 l~~~~~~~A~~~~~~~~----~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES----AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHTCHHHHHHHHTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 34455555555544332 344555666666666666666666655431 22233333334444444444
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC
Q 039362 321 FKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (440)
-+.....| -++....+|.+.|++++|.+++.++
T Consensus 730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 33333322 1233333444555555555555444
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.37 E-value=0.0037 Score=44.15 Aligned_cols=141 Identities=12% Similarity=0.123 Sum_probs=97.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 039362 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352 (440)
Q Consensus 273 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 352 (440)
+.-.|..++..++..+.... .+..-++.++--....-+=+-..+.++.+-+. .|. ..+|+....
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 34568888888888887753 34455666665555445555555555554432 121 234444444
Q ss_pred HHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCCc
Q 039362 353 YEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431 (440)
Q Consensus 353 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 431 (440)
...+-.++ .+....+..+..+..+|+-++-.+++..+....+++|..+..++.+|.+.|+..+|.+++.+.-+.|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44444443 244556667788889999999999999987777888889999999999999999999999999998874
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.27 E-value=0.09 Score=51.52 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=89.0
Q ss_pred hchhcHHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 039362 74 GRLAKRELAVA-VHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCGEMNMARQVF 152 (440)
Q Consensus 74 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 152 (440)
...+++++|.+ ++.. + ++......++..+.+.|..+.|.++.+.- ..-.......|++++|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHH
Confidence 34566666655 3311 1 11222366667777778888877766421 11133445678888888887
Q ss_pred hhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhh
Q 039362 153 ELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPL 232 (440)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (440)
+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+....+.+.....| .
T Consensus 676 ~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~ 738 (814)
T 3mkq_A 676 TDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------K 738 (814)
T ss_dssp TTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------C
T ss_pred HhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------c
Confidence 6663 567788888888888888888888887642 2234444455666666555555554443 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhh
Q 039362 233 QTSLIDMYAKCGAIKEALIVFHG 255 (440)
Q Consensus 233 ~~~l~~~~~~~g~~~~A~~~~~~ 255 (440)
++....+|.+.|++++|++++.+
T Consensus 739 ~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHH
Confidence 23333445556666666555543
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.26 E-value=0.054 Score=46.53 Aligned_cols=143 Identities=9% Similarity=-0.007 Sum_probs=96.5
Q ss_pred CchhhHHHHHHHH--HhcC---CHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHh---cC--ChHHHH---HHHHHHHH
Q 039362 158 RNVVSWSALIDGY--VKCG---DYKEALVIFEEMRDVGSKAN-EVTLVSVLCACAH---LG--ALDQGR---MMLRYMID 223 (440)
Q Consensus 158 ~~~~~~~~l~~~~--~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~--~~~~a~---~~~~~~~~ 223 (440)
.+...|...+++. ...+ ...+|..+|++..+. .|+ ...+..+..++.. .+ ...... ..+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4667777766554 3333 357899999999887 454 3444433333321 11 111111 12222111
Q ss_pred -cCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHH
Q 039362 224 -KGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFL 302 (440)
Q Consensus 224 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 302 (440)
...+.++.++..+...+...|++++|...++++....|+...|..+...+.-.|++++|.+.+++.... .|...||.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 122667788888888888889999999999999988888878888888999999999999999998876 67776765
Q ss_pred HH
Q 039362 303 GL 304 (440)
Q Consensus 303 ~l 304 (440)
..
T Consensus 348 ~~ 349 (372)
T 3ly7_A 348 WI 349 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.20 E-value=0.00012 Score=64.20 Aligned_cols=225 Identities=11% Similarity=0.080 Sum_probs=151.8
Q ss_pred CChhhHHHHhhhcCCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHH
Q 039362 11 GNIDYSCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIA 90 (440)
Q Consensus 11 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 90 (440)
|++.+|.+.|=+ ..|+..|..++....+.|+++.-+..+....+.. -++..=+.|+-+|++.++..+..+.+
T Consensus 68 ~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl---- 139 (624)
T 3lvg_A 68 GMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---- 139 (624)
T ss_dssp SSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTT----
T ss_pred CchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHH----
Confidence 455555544432 3566778889999999999999999888666543 34444578899999998876544432
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCC------------------------CCchhhHHHHHHHHHhcCChH
Q 039362 91 KTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMP------------------------TKMSVSWNSMLDGYAKCGEMN 146 (440)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~ 146 (440)
-.||..-...+.+-|...|.++.|.-+|..+. ..++.+|..+-.+|...+++.
T Consensus 140 ---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~Efr 216 (624)
T 3lvg_A 140 ---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 216 (624)
T ss_dssp ---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTT
T ss_pred ---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHH
Confidence 23555556677888888888888888876653 136778999999999999887
Q ss_pred HHHHHHhhC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-c
Q 039362 147 MARQVFELM-PERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMID-K 224 (440)
Q Consensus 147 ~a~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~ 224 (440)
-|.-.--.+ ..++ ....++..|-..|.+++-+.+++...... ....-.|+-|.-.|++- ++++..+.++..-. .
T Consensus 217 LAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sri 292 (624)
T 3lvg_A 217 LAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRV 292 (624)
T ss_dssp TTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSS
T ss_pred HHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhc
Confidence 765443222 2111 12235566788899999999998876432 44566777777777665 45665555544322 2
Q ss_pred CCCC------chhhHHHHHHHHHhcCCHHHHH
Q 039362 225 GLSL------TLPLQTSLIDMYAKCGAIKEAL 250 (440)
Q Consensus 225 ~~~~------~~~~~~~l~~~~~~~g~~~~A~ 250 (440)
+++. ....|..++-.|..-.+++.|.
T Consensus 293 NipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 293 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred cHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 3222 2456788888888888888774
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.15 E-value=0.0092 Score=40.09 Aligned_cols=51 Identities=8% Similarity=-0.008 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc
Q 039362 211 LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262 (440)
Q Consensus 211 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 262 (440)
.++|..++++.++.. +.+......+...+...|++++|+..|+++.+..|+
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 355555555555444 444444444455555555555555555555444443
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.11 E-value=0.0012 Score=48.62 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=67.6
Q ss_pred CChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC---CHHHHHHHHhcC-CCC-c--cHhHHHHHHHHHHhcCChhHH
Q 039362 312 GLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAG---QVTEAYEFICQM-PLE-P--TASMLGSLLTGCMNHGKLDLA 384 (440)
Q Consensus 312 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a 384 (440)
+....+.+-|.+....+. ++..+...+..++++.+ ++++++.++++. ... | +...+..+..++.+.|++++|
T Consensus 12 ~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 345666777777766553 67777777888888887 666899888887 333 5 356677788888999999999
Q ss_pred HHHHHHHHhcCCCCCch
Q 039362 385 EIVGKKLVELQPDHDGR 401 (440)
Q Consensus 385 ~~~~~~~~~~~~~~~~~ 401 (440)
.++++.+++.+|.+..+
T Consensus 91 ~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhcCCCCHHH
Confidence 99999999999988643
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.02 E-value=0.0039 Score=43.10 Aligned_cols=69 Identities=23% Similarity=0.225 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcC-C--------CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHH
Q 039362 337 ACMVDALSRAGQVTEAYEFICQM-P--------LEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGL 405 (440)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~-~--------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 405 (440)
..+...+.+.|++..|...++.+ . -.+...++..+..++.+.|+++.|...++++.+..|.++.+...+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34555555666666666655554 0 123567788899999999999999999999999999987664444
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.94 E-value=0.017 Score=42.42 Aligned_cols=85 Identities=14% Similarity=0.123 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCC--chhhHHHHHHHHHhcCCHHHHH
Q 039362 176 YKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG---ALDQGRMMLRYMIDKGLSL--TLPLQTSLIDMYAKCGAIKEAL 250 (440)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 250 (440)
...+.+.|.+....| .++..+...+..++++.+ +.++++.+++.+.+.. .| +...+-.+.-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 345555666655555 466677777777777777 5567888888877765 23 3455556677778888888888
Q ss_pred HHHhhhhhcCCc
Q 039362 251 IVFHGVEKHQSD 262 (440)
Q Consensus 251 ~~~~~~~~~~~~ 262 (440)
++++.+.+..|+
T Consensus 92 ~y~~~lL~ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhcCCC
Confidence 888888777774
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.045 Score=41.36 Aligned_cols=127 Identities=14% Similarity=0.095 Sum_probs=75.7
Q ss_pred HHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHH
Q 039362 240 YAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWY 319 (440)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 319 (440)
....|+++.|.++.+.+. +...|..+.......|+++-|.+.|.+... +..+.-.|.-.|+.+....
T Consensus 15 AL~lg~l~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 345677777777765542 456777777777777777777777776442 2333334444566665555
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 039362 320 FFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL 391 (440)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 391 (440)
+-+.....| -++.....+...|+++++.++|.+.+.-|....+ ....|-.+.|.++.+.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 444444333 2455556667778888888888777644322221 12355566666666654
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.80 E-value=0.005 Score=42.53 Aligned_cols=66 Identities=14% Similarity=-0.103 Sum_probs=55.4
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhccChHHHHHHHHHHHhcC
Q 039362 364 TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ-------PDHDGRYVGLSNVYAIFKRWDEARTTREAMETRG 429 (440)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 429 (440)
+......++..+...|+++.|...++++.+.. +..+.++..++.++.+.|++++|..+++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 44556678899999999999999999998853 2334578999999999999999999999998754
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.29 E-value=0.042 Score=38.79 Aligned_cols=88 Identities=15% Similarity=0.106 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCC-CchhhHHHHHHHHHhcCCHHHH
Q 039362 174 GDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQ---GRMMLRYMIDKGLS-LTLPLQTSLIDMYAKCGAIKEA 249 (440)
Q Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 249 (440)
.....+.+-|.+....| .|+..+-..+..++.+...... ++.+++.+.+.+.+ ......-.|.-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 33445555555555544 3666666666667777665555 66777776665411 1233344556667777777777
Q ss_pred HHHHhhhhhcCCc
Q 039362 250 LIVFHGVEKHQSD 262 (440)
Q Consensus 250 ~~~~~~~~~~~~~ 262 (440)
.+.++.+.+..|+
T Consensus 94 ~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCC
Confidence 7777777766663
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.25 E-value=0.18 Score=35.78 Aligned_cols=147 Identities=17% Similarity=0.051 Sum_probs=97.5
Q ss_pred HHHHHHH--hhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhhCCCCC-chhhHHHHHHHHHhc
Q 039362 66 YPFLAKA--SGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDIVYAREVFDGMPTK-MSVSWNSMLDGYAKC 142 (440)
Q Consensus 66 ~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~ 142 (440)
...|+.+ +...|..++..++..+..... +..-+|-+|--....-+-+...++++.+-+- |. ..+
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C 74 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKC 74 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------Hhh
Confidence 3444443 344577888888888877653 4455666665555556666666666554331 11 234
Q ss_pred CChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039362 143 GEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMI 222 (440)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (440)
|++......+-.+. .+.......++.+..+|+-++-.+++..+... .+|+......+..+|.+.|+..++.+++.++-
T Consensus 75 ~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 75 QNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp SCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 44555555544443 34455666778888899999988888886443 37788888888899999999999999999988
Q ss_pred HcCCC
Q 039362 223 DKGLS 227 (440)
Q Consensus 223 ~~~~~ 227 (440)
+.|++
T Consensus 153 ~kG~k 157 (172)
T 1wy6_A 153 KKGEK 157 (172)
T ss_dssp HTTCH
T ss_pred HhhhH
Confidence 88853
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.18 E-value=0.043 Score=38.77 Aligned_cols=86 Identities=13% Similarity=0.071 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHH---HHHHHhcC-CCC-c--cHhHHHHHHHHHHhcCChhHHHHH
Q 039362 315 MEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTE---AYEFICQM-PLE-P--TASMLGSLLTGCMNHGKLDLAEIV 387 (440)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~~~ 387 (440)
..+.+-|.+....|. |+..+-..+..++.+...... ++.++++. ... | .......+..++.+.|++++|.+.
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444444444332 455555555566666655444 66666665 222 4 234555677788899999999999
Q ss_pred HHHHHhcCCCCCch
Q 039362 388 GKKLVELQPDHDGR 401 (440)
Q Consensus 388 ~~~~~~~~~~~~~~ 401 (440)
++.+++..|.+..+
T Consensus 97 ~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 97 VRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHCTTCHHH
T ss_pred HHHHHHhCCCCHHH
Confidence 99999999988654
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.14 Score=48.78 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHH
Q 039362 368 LGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAME 426 (440)
Q Consensus 368 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 426 (440)
+..-...|...|+++.|+++.+++...-|.+-.+|..|+.+|...|+++.|+-.++.+.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 33445667789999999999999999999999999999999999999999999998874
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.02 E-value=0.019 Score=41.64 Aligned_cols=112 Identities=11% Similarity=0.000 Sum_probs=72.1
Q ss_pred CccHhhHHHHHHHHHcCCCh------HHHHHHHHHHhhcCCCCCcch-HHHHHH------HHHhcCCHHHHHHHHhcC-C
Q 039362 295 TPDEITFLGLLSACAHGGLV------MEAWYFFKSLGKRGMVPKSEH-YACMVD------ALSRAGQVTEAYEFICQM-P 360 (440)
Q Consensus 295 ~p~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~l~~------~~~~~~~~~~a~~~~~~~-~ 360 (440)
+-|..+|-..+....+.|+. ++..++|+++... ++|+... |...+. .+...++.++|.++|+.+ .
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44566777777777777888 8888888888774 4554321 222222 123457778888888777 1
Q ss_pred C-CccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 039362 361 L-EPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSN 407 (440)
Q Consensus 361 ~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 407 (440)
+ +.=..+|......-.++|+.+.|.+++.+++.++|.+...+...+.
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 1 1115666666666677888888888888888888776555544443
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.01 E-value=0.079 Score=43.64 Aligned_cols=82 Identities=10% Similarity=-0.011 Sum_probs=43.6
Q ss_pred HHHHHHHhhhhhcCCc---hhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcC-CChHHH
Q 039362 247 KEALIVFHGVEKHQSD---VLIWNAMIGGLAM-----HGFVKESLELFTEMQIVGITPDEITFLGLLSACAHG-GLVMEA 317 (440)
Q Consensus 247 ~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a 317 (440)
..|...++++.+..|+ ...|..+...|.+ -|+.++|.++|++..+.+..-+..++......++.. |+.+.+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555555555554 3455555555555 266666666666665542111234444455555553 666666
Q ss_pred HHHHHHHhhcC
Q 039362 318 WYFFKSLGKRG 328 (440)
Q Consensus 318 ~~~~~~~~~~~ 328 (440)
.+.+++.+...
T Consensus 260 ~~~L~kAL~a~ 270 (301)
T 3u64_A 260 DEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHcCC
Confidence 66666666543
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.34 Score=36.59 Aligned_cols=127 Identities=16% Similarity=0.089 Sum_probs=79.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHH
Q 039362 206 AHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLEL 285 (440)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 285 (440)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.. -+..+.-.|...|+.+....+
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH-------SFDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-------CHHHHHHHHHHhCCHHHHHHH
Confidence 4667888887776654 356678888888888888888888887766 234444455566777666665
Q ss_pred HHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCC
Q 039362 286 FTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMP 360 (440)
Q Consensus 286 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 360 (440)
-+.....| -++.....+...|+++++.++|.+.-+ -| ..+......|..+.|.++.++++
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~------eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LP------LAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HH------HHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hH------HHHHHHHHcCcHHHHHHHHHHhC
Confidence 55555444 244445555667888888887754322 11 11112233566777777777764
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.82 E-value=0.09 Score=38.19 Aligned_cols=101 Identities=9% Similarity=0.065 Sum_probs=65.2
Q ss_pred CchhhHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCccHh-h---HHHHHHHH---HcCCChHHHHHHHHHHhhc
Q 039362 261 SDVLIWNAMIGGLAMHGFV------KESLELFTEMQIVGITPDEI-T---FLGLLSAC---AHGGLVMEAWYFFKSLGKR 327 (440)
Q Consensus 261 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~-~---~~~l~~~~---~~~~~~~~a~~~~~~~~~~ 327 (440)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. . |..+.--| ...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3667777777777777888 7888888887764 466532 2 22222111 2347888888888888765
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC-CCCc
Q 039362 328 GMVPKSEHYACMVDALSRAGQVTEAYEFICQM-PLEP 363 (440)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~p 363 (440)
+-+- ...|....+.-.+.|+...|.+++.+. +..|
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 2222 555666666667888888888888876 4444
No 238
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.73 E-value=1.3 Score=41.34 Aligned_cols=114 Identities=9% Similarity=0.002 Sum_probs=71.1
Q ss_pred CChHHHHHHHHHHHHcCCCccHhhHH----HHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 039362 277 GFVKESLELFTEMQIVGITPDEITFL----GLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEA 352 (440)
Q Consensus 277 ~~~~~a~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 352 (440)
.+.+.|...|....... ..+..... .+.......+...++...+....... ++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 47899999998886544 22332222 22222333443556666666654432 3333344455555678999999
Q ss_pred HHHHhcCCCCc-cHhHH-HHHHHHHHhcCChhHHHHHHHHHHh
Q 039362 353 YEFICQMPLEP-TASML-GSLLTGCMNHGKLDLAEIVGKKLVE 393 (440)
Q Consensus 353 ~~~~~~~~~~p-~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 393 (440)
...|+.+...+ +..-+ .=+..++...|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999995333 22222 2245567788999999999999975
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.72 E-value=1.7 Score=42.49 Aligned_cols=255 Identities=13% Similarity=-0.047 Sum_probs=134.3
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC----Cch--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCHHHHHHH
Q 039362 135 MLDGYAKCGEMNMARQVFELMPE----RNV--VSWSALIDGYVKCGDYKEALVIFEEMRDVGS-------KANEVTLVSV 201 (440)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l 201 (440)
..-+....|+.++++..+..... .+. ..=..+.-+....|..+++..++.......- .+....-..+
T Consensus 380 aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 380 ASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred HHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 34456778888888888887653 121 1222233345555655667777776654321 0111112223
Q ss_pred HHHHHhcCC-hHHHHHHHHHHHHcCCCCch--hhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcC
Q 039362 202 LCACAHLGA-LDQGRMMLRYMIDKGLSLTL--PLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMIGGLAMHG 277 (440)
Q Consensus 202 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 277 (440)
.-+..-.|. -+++...+..+.... .... ..-.++...+.-.|+.+....++..+.+...+ +.-.-.+.-++...|
T Consensus 460 GLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 460 GIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC
Confidence 333333342 245555565555432 1111 12234445556677777777777766543332 222233333455678
Q ss_pred ChHHHHHHHHHHHHcCCCccHhhH--HHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 039362 278 FVKESLELFTEMQIVGITPDEITF--LGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEF 355 (440)
Q Consensus 278 ~~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (440)
+.+.+..+.+.+.... .|....- ..+.-+|+..|+......++..+.... ..+......+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888888777532 3333222 233445667788777777888877642 22222233333344456776777777
Q ss_pred HhcC--CCCccHhHHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 039362 356 ICQM--PLEPTASMLGSLLTGCMNHGKL-DLAEIVGKKLV 392 (440)
Q Consensus 356 ~~~~--~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 392 (440)
++.+ ...|....-..+.-+....|.. .+++..+..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 7655 2344444334444444445443 56677777764
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.10 E-value=1.6 Score=39.14 Aligned_cols=90 Identities=13% Similarity=0.236 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcC-----CCCcc---HhHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCCC----ch
Q 039362 337 ACMVDALSRAGQVTEAYEFICQM-----PLEPT---ASMLGSLLTGCMNHGKLDLAEIVGKKLVEL---QPDHD----GR 401 (440)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~-----~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~ 401 (440)
..|...|...|++.+|.+++.++ +..+. ...+...++.|...+++.+|..+++++... .+.++ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34556666667777776666665 21111 234455556666677777777776665421 12222 13
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHH
Q 039362 402 YVGLSNVYAIFKRWDEARTTREAME 426 (440)
Q Consensus 402 ~~~l~~~~~~~g~~~~A~~~~~~~~ 426 (440)
+...+..+...++|.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555666666667766666655553
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.63 E-value=0.1 Score=37.02 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=42.1
Q ss_pred CCCcchHHHHHHHHHhcCCH---HHHHHHHhcC-CCCc--cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 039362 330 VPKSEHYACMVDALSRAGQV---TEAYEFICQM-PLEP--TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400 (440)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (440)
.|+..+--.+..++.+.... .+++.++++. ...| ....+..+..++.+.|++++|.++.+.+++..|.|..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 34555544455556655543 3456666655 2233 2345556666777777777777777777777777654
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.60 E-value=0.41 Score=34.48 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=42.1
Q ss_pred CCCcchHHHHHHHHHhcCCH---HHHHHHHhcC-CCCc--cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 039362 330 VPKSEHYACMVDALSRAGQV---TEAYEFICQM-PLEP--TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDG 400 (440)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 400 (440)
.|+..+--.+..++.+.... .+++.++++. ...| .......+..++.+.|++++|.++.+.+++..|.|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 34555544555566655543 3556666655 2223 2344455666677777777777777777777777653
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.25 E-value=0.11 Score=45.56 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 369 GSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 369 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
..++..+...|+++++...++.+...+|-+...+..++.++.+.|+..+|++.|+++.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666778888888888888888888777888888888888888888888777654
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.14 E-value=0.26 Score=36.62 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=22.6
Q ss_pred chHHHHHHHHHhccChHHHHHHHHHHH
Q 039362 400 GRYVGLSNVYAIFKRWDEARTTREAME 426 (440)
Q Consensus 400 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 426 (440)
..-..++.+|.+.|++++|+.+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 355678999999999999999998653
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.88 E-value=3.4 Score=42.23 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhhhhc-CCc-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHH
Q 039362 231 PLQTSLIDMYAKCGAIKEALIVFHGVEKH-QSD-----VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGL 304 (440)
Q Consensus 231 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 304 (440)
.-|..++..+.+.+.++.+.++-....+. .++ ...|..+..++...|++++|...+-.+.....+ ...+..|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 44566677777777777776666554433 111 124667777777778888877777666554322 2344555
Q ss_pred HHHHHcCC
Q 039362 305 LSACAHGG 312 (440)
Q Consensus 305 ~~~~~~~~ 312 (440)
+...+..|
T Consensus 978 V~~lce~~ 985 (1139)
T 4fhn_B 978 VNQLTKQG 985 (1139)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCC
Confidence 55554433
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.55 E-value=0.94 Score=32.16 Aligned_cols=71 Identities=13% Similarity=-0.029 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc
Q 039362 192 KANEVTLVSVLCACAHLGAL---DQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262 (440)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 262 (440)
.|+..+-.....++.+..+. ..++.+++.+.+.+........-.|.-++.+.|++++|.++.+.+.+..|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 55666655666666666543 456777777776552223444555667777777888887777777766664
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.25 E-value=1.2 Score=33.02 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhhhhc
Q 039362 231 PLQTSLIDMYAKCGAIKEALIVFHGVEKH 259 (440)
Q Consensus 231 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 259 (440)
..--.+..+|.+.+++++|+.+++.++..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 33344566666666666666666665533
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.24 E-value=0.69 Score=44.18 Aligned_cols=122 Identities=11% Similarity=0.023 Sum_probs=72.7
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHH-H-HHHHHHHHhcC-ChHHHHHHHHHHHHc------CCCC-c-----
Q 039362 166 LIDGYVKCGD-YKEALVIFEEMRDVGSKANEVT-L-VSVLCACAHLG-ALDQGRMMLRYMIDK------GLSL-T----- 229 (440)
Q Consensus 166 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~----- 229 (440)
++..+...++ ++.|..+++++... .|.... + ..++..+...+ +--+|.+++.+..+. ..++ +
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 3344444455 57788888888776 333222 2 22233222222 222444554444321 1111 1
Q ss_pred -----hhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc-hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 039362 230 -----LPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD-VLIWNAMIGGLAMHGFVKESLELFTEM 289 (440)
Q Consensus 230 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m 289 (440)
......-+..+...|+++-|+.+-++.....|+ -.+|..|...|...|+++.|+-.+..+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112233345566788999999998888877774 678999999999999999998888765
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.92 E-value=3.7 Score=34.46 Aligned_cols=165 Identities=10% Similarity=0.020 Sum_probs=91.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCccHhhHHHHHHHHHc
Q 039362 235 SLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLEL----FTEMQIVGITPDEITFLGLLSACAH 310 (440)
Q Consensus 235 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~~ 310 (440)
++..=|.+.+++++|++++..-. ..+.+.|+...|.++ .+-..+.+.+++......++..+..
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga-------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGA-------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 33444556667777766655433 234455665554443 4444556677777666666666544
Q ss_pred CCChH-HHHHHHHHHhh----cC--CCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhc---CC
Q 039362 311 GGLVM-EAWYFFKSLGK----RG--MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNH---GK 380 (440)
Q Consensus 311 ~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~---g~ 380 (440)
-...+ .-.++++++++ .| ..-++.....+...|.+.|++.+|...|- .+-.-+...+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCCC
Confidence 22111 11233333332 11 12256677888888999999999988776 33222455665555555444 44
Q ss_pred hhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 381 LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 381 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
..++--+. ...+-.|.-.|+...|..+++...+
T Consensus 184 ~~e~dlf~--------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFF--------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHH--------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHH--------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 43332221 2223345567888888888877654
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.64 E-value=2.1 Score=30.88 Aligned_cols=71 Identities=13% Similarity=-0.051 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCc
Q 039362 192 KANEVTLVSVLCACAHLGA---LDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSD 262 (440)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 262 (440)
.|+..+-.....++.+..+ ..+++.+++.+.+.+........-.|.-++.+.|++++|.++.+.+.+..|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4566565556666666554 3456667777666542223334445566677777777777777777766664
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.62 E-value=7 Score=39.95 Aligned_cols=81 Identities=6% Similarity=-0.055 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch----hhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHH
Q 039362 198 LVSVLCACAHLGALDQGRMMLRYMIDKGLSLTL----PLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGL 273 (440)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 273 (440)
|..++..+.+.+.++.+.++-....+...+.+. ..|..+...+...|++++|...+..+.....-......++...
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~l 981 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQL 981 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 556666666777777776666655544322221 2455666667777777777666666553333334445555544
Q ss_pred HhcCC
Q 039362 274 AMHGF 278 (440)
Q Consensus 274 ~~~~~ 278 (440)
+..|.
T Consensus 982 ce~~~ 986 (1139)
T 4fhn_B 982 TKQGK 986 (1139)
T ss_dssp HHHCC
T ss_pred HhCCC
Confidence 44443
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.57 E-value=4.3 Score=34.35 Aligned_cols=164 Identities=14% Similarity=0.074 Sum_probs=90.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCccHhhHHHHHHHHHcC
Q 039362 236 LIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLEL----FTEMQIVGITPDEITFLGLLSACAHG 311 (440)
Q Consensus 236 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~~~ 311 (440)
+..=|.+.+++++|++++..-. ..+.+.|+...|.++ ++-..+.++++|......++..+...
T Consensus 41 i~~Ry~~~k~y~eAidLL~~GA-------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILASVS-------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHhhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3334556666777666654433 233444554443333 24445556666666666666655443
Q ss_pred CChH-HHHHHHHHHhh----cC--CCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHH
Q 039362 312 GLVM-EAWYFFKSLGK----RG--MVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLA 384 (440)
Q Consensus 312 ~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 384 (440)
..-+ .=..+.+++++ .| ..-|+.....+...|.+.+++.+|...|- .+-.+.+..+..++..+...+...++
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCccH
Confidence 3211 11222222221 12 22366677788899999999999998884 35455556776666555544432222
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHh
Q 039362 385 EIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 427 (440)
-- .....+--|.-.++...|..+++...+
T Consensus 187 dl--------------fiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 PL--------------YCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HH--------------HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11 222334456677888888887766654
No 253
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=92.53 E-value=3 Score=32.55 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=38.6
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039362 126 TKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTLVSVLCAC 205 (440)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (440)
+++...-...+.++.+.++.+....+...+.+++..+-...+.++...+..+ +...+..+.. .++...-...+.++
T Consensus 92 ~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADAL 167 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3343333344444444444333333333333344444444444444444422 3333333332 33444444455555
Q ss_pred HhcCChHHHHHHHHHHHH
Q 039362 206 AHLGALDQGRMMLRYMID 223 (440)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~ 223 (440)
...+. ..+...+..+.+
T Consensus 168 ~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 168 GEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHCS-HHHHHHHHHHHH
T ss_pred HHhCc-hhHHHHHHHHHh
Confidence 55554 334444444443
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.25 E-value=1.3 Score=29.63 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 039362 278 FVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341 (440)
Q Consensus 278 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (440)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++|+-++.+ ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 44567777777777888999999999999999999999999999988776 2234556777665
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.93 E-value=1.9 Score=34.99 Aligned_cols=119 Identities=17% Similarity=0.093 Sum_probs=60.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcc----hHHHHHHHHHhcCC
Q 039362 273 LAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSE----HYACMVDALSRAGQ 348 (440)
Q Consensus 273 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~ 348 (440)
..+.|+.+++++....-++.. +.|...-..++..+|-.|+++.|.+-++...+.. |+.. .|..+|++
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH------
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH------
Confidence 445566666666666655543 4444455555666666666666666666655532 3222 22222222
Q ss_pred HHHHH-HHHhcC---C-CCccHhHHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCCCch
Q 039362 349 VTEAY-EFICQM---P-LEPTASMLGSLLTGC--MNHGKLDLAEIVGKKLVELQPDHDGR 401 (440)
Q Consensus 349 ~~~a~-~~~~~~---~-~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~ 401 (440)
+... ++|.-- + +.....-...++.+. ...|+.++|..+-.++.+.-|..+..
T Consensus 78 -E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 78 -AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp -HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred -HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 1111 122211 0 111112223444443 35688888888888888877665543
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.81 E-value=0.72 Score=40.48 Aligned_cols=53 Identities=9% Similarity=0.263 Sum_probs=22.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhhhhcCC-chhhHHHHHHHHHhcCChHHHHHHHHH
Q 039362 236 LIDMYAKCGAIKEALIVFHGVEKHQS-DVLIWNAMIGGLAMHGFVKESLELFTE 288 (440)
Q Consensus 236 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 288 (440)
++..+...|+++++...+..+....| +...+..+|.++.+.|+..+|++.|+.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444433333 333444444444444444444444444
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.62 E-value=1.5 Score=29.25 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039362 178 EALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK 224 (440)
Q Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (440)
++.+-++.+....+.|++......+++|.+.+++..|.++++-+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555555555555555443
No 258
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.13 E-value=12 Score=36.71 Aligned_cols=253 Identities=11% Similarity=-0.072 Sum_probs=134.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHcCC-------CCchhhHHHHHHHH
Q 039362 170 YVKCGDYKEALVIFEEMRDVGSKANEVTL--VSVLCACAHLGALDQGRMMLRYMIDKGL-------SLTLPLQTSLIDMY 240 (440)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 240 (440)
....|+.++++.++......+...+..+- ..+.-+....|..+++..++...+...- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44567777888887776542111222222 2333345566666678887777665431 01122223333333
Q ss_pred --HhcCCHHHHHHHHhhhhhcCCchhh-HH--HHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChH
Q 039362 241 --AKCGAIKEALIVFHGVEKHQSDVLI-WN--AMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVM 315 (440)
Q Consensus 241 --~~~g~~~~A~~~~~~~~~~~~~~~~-~~--~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 315 (440)
.-.++ +++.+.+..+......... .. ++...+.-.|+.+....++..+.+.. .-+..-+..+.-++...|+.+
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence 33344 4555555555432222211 22 23344556788888888888776532 222222333444455778999
Q ss_pred HHHHHHHHHhhcCCCCCcchH--HHHHHHHHhcCCHHHHHHHHhcCC--CCccHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 039362 316 EAWYFFKSLGKRGMVPKSEHY--ACMVDALSRAGQVTEAYEFICQMP--LEPTASMLGSLLTGCMNHGKLDLAEIVGKKL 391 (440)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 391 (440)
.+..+.+.+.... .|....- ..+.-+|+..|+.....+++..+. ...++.-...+.-++...|+.+.+.++++.+
T Consensus 542 ~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 542 LADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp GGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 9999988887631 2222211 234456778889877777888772 2233333333444455577777667766655
Q ss_pred HhcCCCCCchHHH--HHHHHHhccCh-HHHHHHHHHHHh
Q 039362 392 VELQPDHDGRYVG--LSNVYAIFKRW-DEARTTREAMET 427 (440)
Q Consensus 392 ~~~~~~~~~~~~~--l~~~~~~~g~~-~~A~~~~~~~~~ 427 (440)
.+.. ++.+-.. ++.+....|+. .+|..++..+..
T Consensus 621 ~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 621 SKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp GGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 5433 2333332 33333333433 567777777754
No 259
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.30 E-value=9.6 Score=34.05 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcc---HhhHHHHHHHHHcCCChHHHHHHHHHHhhc----CCCCC--cc
Q 039362 266 WNAMIGGLAMHGFVKESLELFTEMQIV--GITPD---EITFLGLLSACAHGGLVMEAWYFFKSLGKR----GMVPK--SE 334 (440)
Q Consensus 266 ~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~ 334 (440)
...|...+...|++.+|..++..+... |..+. ...+...++.|...+++..|..+++++... ...|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677788888888888888887532 21111 134556677788889999998888886532 11222 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcC
Q 039362 335 HYACMVDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (440)
.+...+..+...+++.+|-+.|.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4566777778888888888777766
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.95 E-value=0.8 Score=37.15 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=31.1
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 375 CMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 375 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
..+.|+.++|+.....-++.+|.|...-..+...++-.|+|++|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345555666666666666666666555555566666666666665555555443
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.93 E-value=3 Score=27.66 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 039362 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288 (440)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 288 (440)
...++|..+-+.+...+. ...+-..-+..+.+.|++++|..+.+... .||...|-++.. .+.|-.+++..-+.+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP--WPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 356777777777766552 33333333556778899999988888877 888888877754 467888888888878
Q ss_pred HHHcCCCccHhhHHH
Q 039362 289 MQIVGITPDEITFLG 303 (440)
Q Consensus 289 m~~~~~~p~~~~~~~ 303 (440)
+...| .|....|..
T Consensus 94 la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 94 LGGSS-DPALADFAA 107 (115)
T ss_dssp HHTCS-SHHHHHHHH
T ss_pred HHhCC-CHHHHHHHH
Confidence 77776 565555543
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.90 E-value=8.2 Score=32.65 Aligned_cols=167 Identities=11% Similarity=0.050 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHH----HHHHHhcCCCCCHHHHHHHHHHHHh
Q 039362 132 WNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVI----FEEMRDVGSKANEVTLVSVLCACAH 207 (440)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (440)
|.++..-|.+.+++++|++++..- ...+.+.|+...+-++ ++.+.+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 345556667777777777664322 2344555665554443 3555666778888777777777765
Q ss_pred cCChH-HHHHHH----HHHHHcC--CCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChH
Q 039362 208 LGALD-QGRMML----RYMIDKG--LSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVK 280 (440)
Q Consensus 208 ~~~~~-~a~~~~----~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 280 (440)
...-+ .=..++ .+-.+.| ..-|+.....+...|.+.+++.+|...|- ....+....+..++.-+...+...
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCchHHHHHHHHHHHHHhcCCc
Confidence 54311 112222 2223333 34567788889999999999999988884 221333355544444433333211
Q ss_pred HHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhh
Q 039362 281 ESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGK 326 (440)
Q Consensus 281 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 326 (440)
.++...-..++. |.-.++...|..+++...+
T Consensus 185 --------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 --------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred --------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122222333333 4445788888777665553
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.53 E-value=3.3 Score=27.54 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=58.8
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 039362 209 GALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTE 288 (440)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 288 (440)
...++|..+-+.+...+. ...+-..-+..+.+.|++++|..+.+... .||...|-++.. .+.|-.+++..-+.+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA--YPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 356777777777766552 22233333456778888888888888877 888888877754 466777777777777
Q ss_pred HHHcCCCccHhhHHH
Q 039362 289 MQIVGITPDEITFLG 303 (440)
Q Consensus 289 m~~~~~~p~~~~~~~ 303 (440)
+...| .|....|..
T Consensus 95 la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 95 LARSQ-DPRIQTFVN 108 (116)
T ss_dssp HTTCC-CHHHHHHHH
T ss_pred HHhCC-CHHHHHHHH
Confidence 77666 555555543
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.51 E-value=2.6 Score=29.84 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 039362 278 FVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341 (440)
Q Consensus 278 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (440)
+.-+..+-++.+....+.|++......+.+|.+.+++..|.++|+-++.+ ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34456667777777788999999999999999999999999999988776 2344667877765
No 265
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=88.76 E-value=7.1 Score=30.38 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=7.4
Q ss_pred cHHHHHHHHHHHHhcCC
Q 039362 97 DLFISNSLIHMYGSCGD 113 (440)
Q Consensus 97 ~~~~~~~l~~~~~~~g~ 113 (440)
+..+-...+..+.+.|+
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 34444444444444444
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.88 E-value=5.1 Score=30.86 Aligned_cols=47 Identities=11% Similarity=-0.092 Sum_probs=27.3
Q ss_pred HHHHHHHHhcC---CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039362 349 VTEAYEFICQM---PLEP-TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ 395 (440)
Q Consensus 349 ~~~a~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 395 (440)
..++.++|.-| ++-- -...|......+...|++.+|.++|+..++.+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44555665555 3222 33455556666666677777777777666655
No 267
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=87.58 E-value=8.2 Score=29.71 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=49.1
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCC
Q 039362 17 CKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYES 96 (440)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 96 (440)
-.+++.+..+|...-...+..+.+.+.......+ .++.. .++...-...+.++...++.+.. ..+..+.. .+
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L-~~~l~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~ 88 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPL-IKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DE 88 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CS
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CC
Confidence 3344445556655555555555555553332222 22222 23444434444444444433222 22222222 23
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcC
Q 039362 97 DLFISNSLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143 (440)
Q Consensus 97 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (440)
+..+-...+.++.+.|+.+....+.+.+.+++...-...+.++.+.+
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 44444455555555554433333333333334333333333333333
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.50 E-value=5.9 Score=35.24 Aligned_cols=95 Identities=8% Similarity=-0.136 Sum_probs=49.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHhhc--CCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC----CCCccHhHHH----
Q 039362 300 TFLGLLSACAHGGLVMEAWYFFKSLGKR--GMVPKSEHYACMVDALSRAGQVTEAYEFICQM----PLEPTASMLG---- 369 (440)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~p~~~~~~---- 369 (440)
+...+...+.+.|+++.|.+.+.++... +...-...+...++.+...+++..+...++++ ...++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4555666666667777777777766654 21222334555666666666666666666655 1112221111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc
Q 039362 370 SLLTGCMNHGKLDLAEIVGKKLVEL 394 (440)
Q Consensus 370 ~l~~~~~~~g~~~~a~~~~~~~~~~ 394 (440)
.-+..+...+++..|...|-.+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1112233456666666666555443
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.44 E-value=4.1 Score=28.93 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039362 179 ALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDK 224 (440)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (440)
..+-++.+...++.|++......+++|.+.+++..|.++++-++.+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4444455555555666666666666666666666666666655544
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.87 E-value=15 Score=30.89 Aligned_cols=124 Identities=11% Similarity=0.019 Sum_probs=62.7
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHH----HHHHHHHHHHcCCCCcHHHHHHHH
Q 039362 30 YWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKREL----AVAVHAQIAKTGYESDLFISNSLI 105 (440)
Q Consensus 30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~ 105 (440)
.|.++..-|.+.+++++|++++..-.. .+.+.|+... +.-+++-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 566666667777777777777655322 1222333333 333344455556777766666666
Q ss_pred HHHHhcCC--------HHHHHHHhhCC---CCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCchhhHHHHHH
Q 039362 106 HMYGSCGD--------IVYAREVFDGM---PTKMSVSWNSMLDGYAKCGEMNMARQVFELMPERNVVSWSALID 168 (440)
Q Consensus 106 ~~~~~~g~--------~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 168 (440)
..+..... +..|+..-.+. ...++.....+...|.+.|++.+|+..|-.-...+...+..++.
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLW 173 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHH
Confidence 65544321 12222222222 11244555556666666666666666555332223444444443
No 271
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=85.25 E-value=11 Score=28.95 Aligned_cols=17 Identities=6% Similarity=-0.101 Sum_probs=6.4
Q ss_pred CchhhHHHHHHHHHhcC
Q 039362 158 RNVVSWSALIDGYVKCG 174 (440)
Q Consensus 158 ~~~~~~~~l~~~~~~~~ 174 (440)
++...-...+.++.+.+
T Consensus 88 ~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIG 104 (201)
T ss_dssp SSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 33333333333333333
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=84.64 E-value=9.5 Score=27.89 Aligned_cols=48 Identities=6% Similarity=-0.092 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcC--CCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCCc
Q 039362 384 AEIVGKKLVELQ--PDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431 (440)
Q Consensus 384 a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 431 (440)
+..+|..+...+ ......|...+..+...|++++|.++++.-++.+-+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 556666665544 333334566666666666666666666665555443
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=81.98 E-value=13 Score=27.65 Aligned_cols=30 Identities=7% Similarity=-0.005 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039362 366 SMLGSLLTGCMNHGKLDLAEIVGKKLVELQ 395 (440)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 395 (440)
..|......+-..|++.+|.++|+..++.+
T Consensus 97 lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 97 QFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 444555555556666666666666666554
No 274
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=81.49 E-value=20 Score=29.24 Aligned_cols=58 Identities=9% Similarity=0.080 Sum_probs=24.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhhhhcCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039362 229 TLPLQTSLIDMYAKCGAIKEALIVFHGVEKHQSDVLIWNAMIGGLAMHGFVKESLELFTEMQI 291 (440)
Q Consensus 229 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 291 (440)
+..+-...+.++.+.|+......+...+. .++ .....+.++.+.|.. .+...+..+..
T Consensus 205 ~~~vR~~A~~aL~~~~~~~~~~~L~~~l~--d~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRKDKRVLSVLCDELK--KNT--VYDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp CHHHHHHHHHHHHHTTCGGGHHHHHHHHT--SSS--CCHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCHhhHHHHHHHhc--Ccc--HHHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 34444444455555554332222222222 232 223334455555552 45555555544
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.12 E-value=27 Score=30.44 Aligned_cols=157 Identities=15% Similarity=0.070 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhCCCC--------CchhhHHHHHHHHHhcC-ChHHHHHHHhhCCC---CchhhH----
Q 039362 100 ISNSLIHMYGSCGDIVYAREVFDGMPT--------KMSVSWNSMLDGYAKCG-EMNMARQVFELMPE---RNVVSW---- 163 (440)
Q Consensus 100 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~---- 163 (440)
....|...|.+.|+.++..+++..... ........++..+.... ..+.-.++.....+ .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666655543 11223444455444432 22222233322221 111222
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCchhhH-
Q 039362 164 --SALIDGYVKCGDYKEALVIFEEMRDVGSKANE-----VTLVSVLCACAHLGALDQGRMMLRYMIDKG--LSLTLPLQ- 233 (440)
Q Consensus 164 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~- 233 (440)
..++..|...|++.+|.+++.++.+.--..|. ..+..-+..|...+++.++...+....... +.+++.+.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 25677788888888888888777553112121 234445566677788888877777664321 22333222
Q ss_pred ---HHHHHHHH-hcCCHHHHHHHHhhh
Q 039362 234 ---TSLIDMYA-KCGAIKEALIVFHGV 256 (440)
Q Consensus 234 ---~~l~~~~~-~~g~~~~A~~~~~~~ 256 (440)
..-+..+. ..+++..|...|-+.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 12233345 677777776666554
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.42 E-value=13 Score=32.94 Aligned_cols=61 Identities=11% Similarity=0.071 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CchhhHHHHHHHHHhcCCHHHHHHHHhhhh
Q 039362 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLS--LTLPLQTSLIDMYAKCGAIKEALIVFHGVE 257 (440)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 257 (440)
+...+...+.+.|+++.|.+.+.++...... .-...+...+..+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444555566666666666666665543211 122344444555555555555555555543
No 277
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.79 E-value=10 Score=34.24 Aligned_cols=60 Identities=17% Similarity=0.092 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCCCch-h------hH-HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 039362 130 VSWNSMLDGYAKCGEMNMARQVFELMPERNV-V------SW-SALIDGYVKCGDYKEALVIFEEMRDV 189 (440)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~------~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (440)
..+|.+++.|...+.++.|..+..+..-|.. . .| .-+...+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4577888888888888888888887754422 1 11 22345566678888888887776654
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.34 E-value=21 Score=27.51 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHcCCCccH-hhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCC
Q 039362 279 VKESLELFTEMQIVGITPDE-ITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVP 331 (440)
Q Consensus 279 ~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 331 (440)
..++.++|..|...|+--.. .-|......+...|++.+|..+|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555566655555543322 234444445555566666666665555544344
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=75.36 E-value=28 Score=27.71 Aligned_cols=88 Identities=10% Similarity=0.005 Sum_probs=52.6
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHc--CCCC----CcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039362 33 TVIRGYSKSKNPNKSISLFVKMLRA--GVSP----DHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIH 106 (440)
Q Consensus 33 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (440)
--++.+....++++|.+++++..+. ++++ ........+..-.....-.-+..+.+.+ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3467889999999999999986542 2332 1122333333333333344444555554 22 345555666777
Q ss_pred HHHhcCCHHHHHHHhhC
Q 039362 107 MYGSCGDIVYAREVFDG 123 (440)
Q Consensus 107 ~~~~~g~~~~a~~~~~~ 123 (440)
.+.+.|+.++|.++|=+
T Consensus 100 ~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHH
Confidence 88888888888887743
No 280
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=74.09 E-value=27 Score=29.17 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 039362 199 VSVLCACAHLGALDQGRMMLRYM 221 (440)
Q Consensus 199 ~~l~~~~~~~~~~~~a~~~~~~~ 221 (440)
..++.-|...|+.++|...++++
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 44566666666666666666654
No 281
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=73.28 E-value=63 Score=30.51 Aligned_cols=350 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhh-------chhcHHHHHHHHHHHHHcCCCCcHH---HHH
Q 039362 33 TVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG-------RLAKRELAVAVHAQIAKTGYESDLF---ISN 102 (440)
Q Consensus 33 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~---~~~ 102 (440)
.+|-.|.|.|.+++|.++.++.... ..--...|...+..++ ....-++....|++..+..+..|+. +|.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 235 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRLAVYK 235 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC------------------------------CHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q ss_pred HHHHHHHhcCCHHHHHHHhhCCCCCchhhHHHHHHHHHhcC-----------ChHHHHHHHhhCCCCchhhHHHHHHHHH
Q 039362 103 SLIHMYGSCGDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG-----------EMNMARQVFELMPERNVVSWSALIDGYV 171 (440)
Q Consensus 103 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 171 (440)
.+..+=....+..... .+..-|--+=-.+++.+ .+++..+.+.+..+.--.. ....++.
T Consensus 236 Iig~cD~~~~~~~~v~--------~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~--lYf~vLl 305 (661)
T 2qx5_A 236 LIGRCDLSRKNIPAVT--------LSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN--YYLQTLL 305 (661)
T ss_dssp HHHTCCGGGCCCGGGC--------CSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT--CHHHHHH
T ss_pred HHhcccccccchHHHh--------ccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh--HHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh---cCCHHH
Q 039362 172 KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK---CGAIKE 248 (440)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~ 248 (440)
-.|+++.|.+.+-.. ...+.+.+...+.-+.-.+- -+.+..........-+..|+..|.+ ..+...
T Consensus 306 LtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~ 374 (661)
T 2qx5_A 306 LSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFRYSDPRV 374 (661)
T ss_dssp HTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTTCHHH
T ss_pred HHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhhcCCHHH
Q ss_pred HHHHHhhhhhcCCc-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHH
Q 039362 249 ALIVFHGVEKHQSD-----VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKS 323 (440)
Q Consensus 249 A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 323 (440)
|.++|--+. -++ ......+-......++++ +.--.+.+|..--..++.-+...=+++.-.++.+.
T Consensus 375 Al~Y~~li~--l~~g~~~~~~~~~~l~eLvletr~f~--------~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~ 444 (661)
T 2qx5_A 375 AVEYLVLIT--LNEGPTDVELCHEALRELVLETKEFT--------VLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHT 444 (661)
T ss_dssp HHHHHHGGG--GSCCHHHHHHHHHHHHHHHHHHCCHH--------HHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHH
T ss_pred HHHHHHHHh--ccCCchHHHHHHHHHHHHHHhcccHH--------HHcCCcCCCCCcCcchHHHhhcccccccHHHHHHH
Q ss_pred HhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCccH-hHHHHHHHHHHhcCC----------------hhHHHH
Q 039362 324 LGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQMPLEPTA-SMLGSLLTGCMNHGK----------------LDLAEI 386 (440)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~-~~~~~l~~~~~~~g~----------------~~~a~~ 386 (440)
+.. ....-+...|++++|..+|.-.+-...+ .+.+.++.-....-+ ...|..
T Consensus 445 i~~-----------~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~ 513 (661)
T 2qx5_A 445 ITE-----------QAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARR 513 (661)
T ss_dssp HHH-----------HHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHH
T ss_pred HHH-----------HHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHH
Q ss_pred HHHH-------HHhcCCCCCchHHHHHHH-----HHhccChHHHHHHHHHH
Q 039362 387 VGKK-------LVELQPDHDGRYVGLSNV-----YAIFKRWDEARTTREAM 425 (440)
Q Consensus 387 ~~~~-------~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~ 425 (440)
+.+. ..+..+.+..++..|... +...|+|+.|++.++++
T Consensus 514 i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 514 MASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 282
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=72.01 E-value=50 Score=28.81 Aligned_cols=287 Identities=8% Similarity=0.007 Sum_probs=161.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC--------CchhhHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHHH---
Q 039362 131 SWNSMLDGYAKCGEMNMARQVFELMPE--------RNVVSWSALIDGYVKC-GDYKEALVIFEEMRDVGSKANEVTL--- 198 (440)
Q Consensus 131 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--- 198 (440)
+...|...|.+.|+.++..+++..... ........+++.+... +..+.-.++..+..+.. .-+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 456788899999999999999988764 2344566777777664 44555555555554321 1111222
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-----hhhHHHHHHHHHhcCCHHHHHHHHhhhhhc----CCchhhH
Q 039362 199 ---VSVLCACAHLGALDQGRMMLRYMIDKGLSLT-----LPLQTSLIDMYAKCGAIKEALIVFHGVEKH----QSDVLIW 266 (440)
Q Consensus 199 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ 266 (440)
..++..|...|++.+|..++..+.+.--..| ..++..-+..|...+++.++...+...... .+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2577889999999999999988876422222 234566677888999999999999887543 1333222
Q ss_pred H----HHHHHHH-hcCChHHHHHHHHHHHHc-C--CCcc---HhhHHHHHHHHHcCCChHHHHHHHH-HHhhcCCCCCcc
Q 039362 267 N----AMIGGLA-MHGFVKESLELFTEMQIV-G--ITPD---EITFLGLLSACAHGGLVMEAWYFFK-SLGKRGMVPKSE 334 (440)
Q Consensus 267 ~----~l~~~~~-~~~~~~~a~~~~~~m~~~-~--~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~ 334 (440)
. .-...+. ..++|..|...|-+.... . ..|. ...|..+.... .++..+...++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHH
Confidence 1 1223456 789999998888765421 1 0121 12333332222 233222222222 111111235555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcC--CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 039362 335 HYACMVDALSRAGQVTEAYEFICQM--PLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIF 412 (440)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (440)
.+..++.+| ..+++.+...+++.. .+..|+.....+-..+.+ --...+.++ ..|-....+..++..+.-
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i--~~pYsrIsl~~iA~~l~l- 328 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT-----MLEQNLCRI--IEPYSRVQVAHVAESIQL- 328 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH-----HHHHHHHHH--HTTCSEEEHHHHHHHHTC-
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-----HHHHHHHHH--hHhhceeeHHHHHHHHCc-
Confidence 555666654 567887777777766 233344321111100000 001111111 135455567777766643
Q ss_pred cChHHHHHHHHHHHhcCC
Q 039362 413 KRWDEARTTREAMETRGV 430 (440)
Q Consensus 413 g~~~~A~~~~~~~~~~~~ 430 (440)
..+++...+-+|+..|.
T Consensus 329 -s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 -PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -CHHHHHHHHHHHHHTTS
T ss_pred -CHHHHHHHHHHHHHCCC
Confidence 67888888888887754
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=70.54 E-value=19 Score=28.35 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=21.4
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039362 365 ASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ 395 (440)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 395 (440)
...|......+-..|++.+|..+|+..++.+
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3556666666667777777777777777665
No 284
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=68.12 E-value=80 Score=29.60 Aligned_cols=200 Identities=13% Similarity=0.003 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHH
Q 039362 174 GDYKEALVIFEEMRDVGSKANEVTLV----SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEA 249 (440)
Q Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 249 (440)
.+.+.|...+....... ..+..... .+.......+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37788888888876543 22332222 22222233343556666666554332 3333344444445577999999
Q ss_pred HHHHhhhhhcCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 039362 250 LIVFHGVEKHQSD-VLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328 (440)
Q Consensus 250 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 328 (440)
...|..+.....+ ....-=+..++...|+.++|..+|+.+.. +. +|..++.+ .+.|..-.. ....
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~lAa-~~Lg~~~~~-------~~~~ 370 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMVAA-QRIGEEYEL-------KIDK 370 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHHHH-HHTTCCCCC-------CCCC
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHHHH-HHcCCCCCC-------CCCC
Confidence 9999888753222 22333445567788999999999988863 21 33333322 223321000 0000
Q ss_pred CCCC-cc-----hHHHHHHHHHhcCCHHHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHH
Q 039362 329 MVPK-SE-----HYACMVDALSRAGQVTEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKK 390 (440)
Q Consensus 329 ~~~~-~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 390 (440)
..+. .. .-...+..+...|....|...+....-..+......+.......|.++.++....+
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 0110 00 11123455677888888877766651122333333444445567777766655543
No 285
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.44 E-value=32 Score=22.96 Aligned_cols=54 Identities=13% Similarity=-0.007 Sum_probs=25.0
Q ss_pred cCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 039362 142 CGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKANEVTL 198 (440)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 198 (440)
.|++++|..+.+...-||...|..+. -.+.|..+++...+.++..+| .|....|
T Consensus 52 rG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 52 QGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp TTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred chhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 33333333333333334444444332 235566666666665555554 4433333
No 286
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=61.24 E-value=54 Score=25.20 Aligned_cols=64 Identities=13% Similarity=0.172 Sum_probs=42.1
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCC
Q 039362 163 WSALIDGYV---KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA-----LDQGRMMLRYMIDKGLS 227 (440)
Q Consensus 163 ~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 227 (440)
+..+|+++. +..+.+.|+-++-+|++.| .|....-..++.+....|. ...|...++.....|.|
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 334555554 4578999999999999998 7776666666666655553 23444555556666644
No 287
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.14 E-value=34 Score=22.87 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=23.6
Q ss_pred HhcCChHHHHHHHhhCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 039362 140 AKCGEMNMARQVFELMPERNVVSWSALIDGYVKCGDYKEALVIFEEMRDVG 190 (440)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 190 (440)
...|++++|..+.+...-||...|..+. -.+.|..+++...+.++..+|
T Consensus 51 mNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 51 MNRGDYASALQQGNKLAYPDLEPWLALC--EYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHTTCHHHHHHHHTTSCCGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCC
T ss_pred HcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 3344444444444444444554444432 234555566655555555554
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.11 E-value=63 Score=25.98 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=11.1
Q ss_pred HHHHHHhcCChHHHHHHHhhC
Q 039362 135 MLDGYAKCGEMNMARQVFELM 155 (440)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~ 155 (440)
.+...++.|+.+....+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g 28 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGG 28 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcC
Confidence 344445556666555555543
No 289
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=60.89 E-value=74 Score=26.69 Aligned_cols=60 Identities=13% Similarity=0.269 Sum_probs=43.0
Q ss_pred HHhcCCCCccH--hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 355 FICQMPLEPTA--SMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 355 ~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
+|...++.|.. -++..-+..+.+.+++..|..+.+++++++|... ..++|.+++....+.
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 34444677755 3456667778899999999999999999998632 345677777666543
No 290
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=60.14 E-value=56 Score=25.04 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=32.7
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 039362 164 SALIDGYV---KCGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLG 209 (440)
Q Consensus 164 ~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 209 (440)
..+|+++. +..+.+.|+-++-+|++.|-.|....-..++.+....|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34455554 45789999999999999987777666666666665544
No 291
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.79 E-value=30 Score=31.31 Aligned_cols=61 Identities=18% Similarity=0.109 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHhhcCC-CCCcc--h-HHHHHHHHHhcCCHHHHHHHHhcC
Q 039362 299 ITFLGLLSACAHGGLVMEAWYFFKSLGKRGM-VPKSE--H-YACMVDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~-~~~l~~~~~~~~~~~~a~~~~~~~ 359 (440)
..++.+++.|...+.++.|..+.++..--.. .++.. . +..+.+.+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4577777788888888888888777642100 01111 1 123455566677777777777665
No 292
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.95 E-value=69 Score=25.73 Aligned_cols=17 Identities=6% Similarity=-0.054 Sum_probs=9.1
Q ss_pred HHhcCCHHHHHHHHhcC
Q 039362 343 LSRAGQVTEAYEFICQM 359 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~~~ 359 (440)
.+..|+.+-+..+++..
T Consensus 226 A~~~~~~~~v~~Ll~~~ 242 (285)
T 1wdy_A 226 AVEKKHLGLVQRLLEQE 242 (285)
T ss_dssp HHHTTCHHHHHHHHHSS
T ss_pred HHHcCCHHHHHHHHhcc
Confidence 34455665555555543
No 293
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=57.13 E-value=57 Score=24.97 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCC-ccH-hHHH-----HHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 039362 349 VTEAYEFICQMPLE-PTA-SMLG-----SLLTGCMNHGKLDLAEIVGKKLVELQPDHDGR 401 (440)
Q Consensus 349 ~~~a~~~~~~~~~~-p~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 401 (440)
.+.|+.+++.++-. +.. .... ..+..|.+.|.+++|.+++++....++.+...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~l 153 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPF 153 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHH
Confidence 45667777776221 211 1222 22345778888888888888876665554433
No 294
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=56.75 E-value=67 Score=24.90 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=45.0
Q ss_pred chhhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCC
Q 039362 159 NVVSWSALIDGYVK---CGDYKEALVIFEEMRDVGSKANEVTLVSVLCACAHLGA-----LDQGRMMLRYMIDKGLS 227 (440)
Q Consensus 159 ~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 227 (440)
+...+..+|+++.+ ..+.+.|+-++-+|++.|-.|....-..++.+....|. ...|...++.....|.|
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33444455666654 57999999999999999978777777777766655552 33455555656666643
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.73 E-value=51 Score=24.08 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhhhhcCCc---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCcc
Q 039362 234 TSLIDMYAKCGAIKEALIVFHGVEKHQSD---VLIWNAMIGGLAMHGF--VKESLELFTEMQIVGITPD 297 (440)
Q Consensus 234 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 297 (440)
..++.-|...|+.++|.+.++++. .|. ..+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~--~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE--VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT--CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC--CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 456666667777777777777765 331 2233344444444322 3446666666666554433
No 296
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=55.27 E-value=82 Score=25.49 Aligned_cols=16 Identities=13% Similarity=-0.002 Sum_probs=6.4
Q ss_pred cHHHHHHHHHHHHhcC
Q 039362 97 DLFISNSLIHMYGSCG 112 (440)
Q Consensus 97 ~~~~~~~l~~~~~~~g 112 (440)
+..+-...+..+.+.|
T Consensus 36 ~~~vr~~A~~~L~~~~ 51 (280)
T 1oyz_A 36 NSLKRISSARVLQLRG 51 (280)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHccC
Confidence 3333333444444444
No 297
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=54.62 E-value=24 Score=28.29 Aligned_cols=56 Identities=11% Similarity=-0.002 Sum_probs=34.2
Q ss_pred HHHHHccCChhhHHHHHHHHHHcCCCCCcch-------HHHHHHHhh--chhcHHHHHHHHHHHH
Q 039362 35 IRGYSKSKNPNKSISLFVKMLRAGVSPDHLT-------YPFLAKASG--RLAKRELAVAVHAQIA 90 (440)
Q Consensus 35 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~~ 90 (440)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3345677888888888887777766555332 233333322 5677777666666543
No 298
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.49 E-value=89 Score=31.21 Aligned_cols=87 Identities=6% Similarity=-0.172 Sum_probs=52.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHhcC--CCCc------------------
Q 039362 304 LLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVTEAYEFICQM--PLEP------------------ 363 (440)
Q Consensus 304 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~p------------------ 363 (440)
++..|...|..+-+.++. .- .+.+...--.+.++|...|++++|...|+++ ++.+
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHH----hh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 555566667666554432 21 1223223335677888889999999999887 2211
Q ss_pred -----cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039362 364 -----TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQ 395 (440)
Q Consensus 364 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 395 (440)
...-|..++..+-+.+-++.+.++.+.+++.-
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 01135566666677777777777777777643
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.99 E-value=58 Score=25.94 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=52.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCc----cHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 039362 268 AMIGGLAMHGFVKESLELFTEMQIV--GITP----DEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVD 341 (440)
Q Consensus 268 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (440)
--+..+....++++|.+++++.... +.++ ........+..-.....-.-+..+.+.+.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 4577888899999999999886542 2222 112222223333332333334444444422 344455566677
Q ss_pred HHHhcCCHHHHHHHHhcC
Q 039362 342 ALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~ 359 (440)
.+.+.|+.++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 888899999998888765
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.72 E-value=58 Score=22.95 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 039362 164 SALIDGYVKCGDYKEALVIFEEMR 187 (440)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~ 187 (440)
..++.-|...|+.++|...++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445666666677777777666653
No 301
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.31 E-value=61 Score=22.82 Aligned_cols=64 Identities=22% Similarity=0.255 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhhhcCCc---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCccH
Q 039362 233 QTSLIDMYAKCGAIKEALIVFHGVEKHQSD---VLIWNAMIGGLAMHGF--VKESLELFTEMQIVGITPDE 298 (440)
Q Consensus 233 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 298 (440)
...++.-|...|+.++|.+.++++. .|. ......+..++-+.++ .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~--~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE--VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT--CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC--CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3456666777777777777777775 331 2233444444444332 34566677777666644433
No 302
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=51.14 E-value=1.1e+02 Score=25.67 Aligned_cols=60 Identities=20% Similarity=0.309 Sum_probs=42.5
Q ss_pred HHhcCCCCccHh--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 355 FICQMPLEPTAS--MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 355 ~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
+|...++.|.+. ++..-+....+.+++..|..+.+++++++|+.. ..++|.+++....+.
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~ 247 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKN 247 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHS
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 344446777653 456667778899999999999999999987632 345577776666544
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.64 E-value=90 Score=24.55 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHcCCCCCc-chHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcH
Q 039362 45 NKSISLFVKMLRAGVSPDH-LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDL 98 (440)
Q Consensus 45 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 98 (440)
+.+.++|..|...||-... ..|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4666777777777654443 33666666666777777777777777776666543
No 304
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.39 E-value=60 Score=26.53 Aligned_cols=12 Identities=17% Similarity=-0.133 Sum_probs=6.3
Q ss_pred CChhhHHHHhhh
Q 039362 11 GNIDYSCKVLSH 22 (440)
Q Consensus 11 g~~~~A~~~~~~ 22 (440)
.+.++..+++..
T Consensus 10 ~~~~~v~~lL~~ 21 (285)
T 3kea_A 10 WKSKQLKSFLSS 21 (285)
T ss_dssp CCHHHHHHHHHS
T ss_pred cCHHHHHHHHHh
Confidence 455555555543
No 305
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=49.06 E-value=22 Score=23.60 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=19.6
Q ss_pred ChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHH
Q 039362 43 NPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELA 82 (440)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 82 (440)
..++|..++..+.+.| +.+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 4566666666665543 24456666666554554444
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.94 E-value=51 Score=24.08 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 039362 163 WSALIDGYVKCGDYKEALVIFEEMR 187 (440)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (440)
...++.-|...|+.++|...++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3455666666677777777766663
No 307
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=47.13 E-value=51 Score=20.69 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=38.1
Q ss_pred HHHHcCCCCCcchHHHHHHHhhchh-cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 039362 53 KMLRAGVSPDHLTYPFLAKASGRLA-KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113 (440)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 113 (440)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..|....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3556676665543 44555555554 455677788888777666666666666777766664
No 308
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.88 E-value=82 Score=23.00 Aligned_cols=43 Identities=9% Similarity=-0.020 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCCHHHHHHHhhCC
Q 039362 82 AVAVHAQIAKTGYESD-LFISNSLIHMYGSCGDIVYAREVFDGM 124 (440)
Q Consensus 82 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 124 (440)
+.++|..|...|+-.. +..|......+...|++.+|.++|+.-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 127 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRG 127 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444433222 223444444444445555555554443
No 309
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.41 E-value=1.3e+02 Score=25.14 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=14.0
Q ss_pred ccccccCChhhHHHHhhhcCCCC
Q 039362 5 SALSYLGNIDYSCKVLSHLSNPR 27 (440)
Q Consensus 5 y~~~~~g~~~~A~~~~~~~~~~~ 27 (440)
|... |+.++|...++++..|.
T Consensus 13 Yf~~--~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 13 YFEH--GDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHH--CCHHHHHHHHHTTCCGG
T ss_pred HHcC--CCHHHHHHHHHHhCCcc
Confidence 4455 77777777777776554
No 310
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=44.45 E-value=89 Score=28.31 Aligned_cols=42 Identities=14% Similarity=-0.005 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHH
Q 039362 381 LDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTR 422 (440)
Q Consensus 381 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 422 (440)
++.|...|.++....|.+...|+.++......|+.-+|.-.|
T Consensus 168 ~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y 209 (497)
T 1ya0_A 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY 209 (497)
T ss_dssp HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHH
Confidence 445555555555555555555555555555555444444433
No 311
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.44 E-value=2.5e+02 Score=27.99 Aligned_cols=48 Identities=4% Similarity=-0.143 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch----hhHHHHHHHHHhcC
Q 039362 197 TLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTL----PLQTSLIDMYAKCG 244 (440)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 244 (440)
-|..++..+.+.+.++.+.++-+...+.--+.|. ..+..+..+.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5778888888889998888888887765323333 24555665555443
No 312
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=44.33 E-value=63 Score=23.46 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=43.1
Q ss_pred HHHHHcCCCCCcchHHHHHHHhhchh-cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 039362 52 VKMLRAGVSPDHLTYPFLAKASGRLA-KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114 (440)
Q Consensus 52 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 114 (440)
+.+.+.|+.++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3466677766654 344555565555 6677899999998888777777766677777777754
No 313
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=43.12 E-value=92 Score=24.20 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=12.6
Q ss_pred HHHHhccChHHHHHHHHHHHh
Q 039362 407 NVYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~~~~ 427 (440)
......|+...+.++.+.+.+
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 334455666677777666654
No 314
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=42.94 E-value=1e+02 Score=22.89 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHcCCCCCc-chHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHH
Q 039362 46 KSISLFVKMLRAGVSPDH-LTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLF 99 (440)
Q Consensus 46 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 99 (440)
.+.++|..|..+|+-... ..|......+...|++.+|.++|..-++.+-.|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 356667777666654433 235555566666677777777777777666665543
No 315
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=42.11 E-value=58 Score=23.11 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=40.0
Q ss_pred HHHHcCCCCCcchHHHHHHHhhchh-cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 039362 53 KMLRAGVSPDHLTYPFLAKASGRLA-KRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114 (440)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 114 (440)
.+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 355677766554 334455555555 5667888898888887777777666667777776643
No 316
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=40.61 E-value=1.5e+02 Score=24.13 Aligned_cols=75 Identities=12% Similarity=-0.034 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 039362 173 CGDYKEALVIFEEMRDVGS-KANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGAIKEALI 251 (440)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 251 (440)
..+..+..+++.. .++ ..|....+. +...+..|+.+-+..+++ .|..++...-...+...+..|+.+-+..
T Consensus 9 ~~~~~~v~~lL~~---~~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~ 80 (285)
T 3kea_A 9 TWKSKQLKSFLSS---KDTFKADVHGHSA-SYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKI 80 (285)
T ss_dssp GCCHHHHHHHHHS---TTTTCCCTTSCCH-HHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHH
T ss_pred hcCHHHHHHHHHh---CCCCccCCCCCCH-HHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 4455555555543 222 222222333 333445666665544443 3433322211223334455666665555
Q ss_pred HHhh
Q 039362 252 VFHG 255 (440)
Q Consensus 252 ~~~~ 255 (440)
+++.
T Consensus 81 Ll~~ 84 (285)
T 3kea_A 81 LLFS 84 (285)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 5543
No 317
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=39.77 E-value=54 Score=21.64 Aligned_cols=28 Identities=14% Similarity=0.079 Sum_probs=12.2
Q ss_pred HHHHHHHhhCCCCCchhhHHHHHHHHHh
Q 039362 114 IVYAREVFDGMPTKMSVSWNSMLDGYAK 141 (440)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 141 (440)
.++|.++++.++.+++..|..++.++..
T Consensus 53 ~~~ar~Lld~L~~rG~~Af~~F~~aL~e 80 (97)
T 3ygs_P 53 RDQARQLIIDLETRGSQALPLFISCLED 80 (97)
T ss_dssp HHHHHHHHHHHTTSCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 318
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=39.60 E-value=1.8e+02 Score=24.95 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhCCCCC
Q 039362 101 SNSLIHMYGSCGDIVYAREVFDGMPTK 127 (440)
Q Consensus 101 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 127 (440)
...++.-|...||.++|.+.++++..|
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p 41 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAP 41 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCc
Confidence 355666666667777777777666554
No 319
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=37.74 E-value=56 Score=23.56 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=38.5
Q ss_pred HHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 039362 53 KMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113 (440)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 113 (440)
.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 455567766543 233445554445 56788888888888777777766666777777764
No 320
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=37.35 E-value=60 Score=23.99 Aligned_cols=70 Identities=9% Similarity=0.063 Sum_probs=47.2
Q ss_pred hhhHHHHHHH-HHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHhcCCH
Q 039362 44 PNKSISLFVK-MLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKT--GYESDLFISNSLIHMYGSCGDI 114 (440)
Q Consensus 44 ~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 114 (440)
.+.+++-+++ +.+.|++++.. -..++..+...+..-.|.++++.+.+. ++..+..|...-++.+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455555544 45567776543 455666676667777899999999887 7777776666667777777743
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.26 E-value=75 Score=22.84 Aligned_cols=62 Identities=6% Similarity=-0.036 Sum_probs=41.6
Q ss_pred HHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 039362 52 VKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114 (440)
Q Consensus 52 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 114 (440)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.++..+..|....+..+...|-+
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3456677766543 2344555555556667888888888887777777766777778887754
No 322
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.84 E-value=1.5e+02 Score=23.01 Aligned_cols=182 Identities=5% Similarity=-0.029 Sum_probs=87.2
Q ss_pred HHHHHhcCCHHHHHHHHhhhhhcC-----CchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHh---hHHHHHHHH
Q 039362 237 IDMYAKCGAIKEALIVFHGVEKHQ-----SDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI---TFLGLLSAC 308 (440)
Q Consensus 237 ~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~ 308 (440)
+...+..|+.+....+++...+.. .+....+.+ ...+..|+.+ +++.+.+.|..++.. ..+.+ ...
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l-~~A 86 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL-HLAVITTLPS----VVRLLVTAGASPMALDRHGQTAA-HLA 86 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHH-HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHH-HHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHH-HHH
Confidence 444567789888888877544322 233333333 3445566664 444555666555432 22333 334
Q ss_pred HcCCChHHHHHHHHHHhhcCCCCC---cchHHHHHHHHHhcCCHHHHHHHHhcCCCCccH---hHHHHHHHHHHhcCChh
Q 039362 309 AHGGLVMEAWYFFKSLGKRGMVPK---SEHYACMVDALSRAGQVTEAYEFICQMPLEPTA---SMLGSLLTGCMNHGKLD 382 (440)
Q Consensus 309 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~ 382 (440)
+..|+.+-...+++.....+..++ ....+. +...+..|+.+-...+++.- ..++. ..-...+...+..|+.+
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~~~~~ 164 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIHAVENNSLS 164 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHHHHHHHcC-CCcccccccCCCcHHHHHHHcCCHH
Confidence 456777666666555432111221 122222 33345667777666666654 22211 11122334445677777
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCCc
Q 039362 383 LAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVK 431 (440)
Q Consensus 383 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 431 (440)
-+..+++.-...+..+..-.+. +......|+.+-+ +.+++.|..
T Consensus 165 ~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v----~~Ll~~ga~ 208 (241)
T 1k1a_A 165 MVQLLLQHGANVNAQMYSGSSA-LHSASGRGLLPLV----RTLVRSGAD 208 (241)
T ss_dssp HHHHHHHTTCCTTCBCTTSCBH-HHHHHHHTCHHHH----HHHHHTTCC
T ss_pred HHHHHHHcCCCCCCcCCCCCCH-HHHHHHcCCHHHH----HHHHhcCCC
Confidence 6665555433332222222222 2333455665544 444455543
No 323
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.02 E-value=1.3e+02 Score=22.38 Aligned_cols=111 Identities=8% Similarity=-0.079 Sum_probs=53.3
Q ss_pred HHHhcCCHHHHHHHHhhhhh-c-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHh---hHHHHHHHHHcCCC
Q 039362 239 MYAKCGAIKEALIVFHGVEK-H-QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI---TFLGLLSACAHGGL 313 (440)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~ 313 (440)
..+..|+.+....++..-.. . ..+...++.+.. .+..|+.+ +++.+.+.|..++.. ..+.+.. .+..|+
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~-A~~~~~ 84 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDIE----IAKALIDRGADINLQNSISDSPYLY-AGAQGR 84 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTC
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHH-HHHcCC
Confidence 34567888888887765431 1 223333333333 34556644 444445556555432 2233333 344566
Q ss_pred hHHHHHHHHHHhhcCCCC---CcchHHHHHHHHHhcCCHHHHHHHHhcC
Q 039362 314 VMEAWYFFKSLGKRGMVP---KSEHYACMVDALSRAGQVTEAYEFICQM 359 (440)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (440)
.+-+..+++.- +..+ +....+ .+...+..|+.+-+..+++.-
T Consensus 85 ~~~~~~Ll~~~---~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 85 TEILAYMLKHA---TPDLNKHNRYGGN-ALIPAAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp HHHHHHHHHHS---CCCTTCCCTTSCC-SHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHHhcc---CcccccccCCCCc-HHHHHHHcCCHHHHHHHHHcC
Confidence 65555554332 2112 111111 223345667777777777654
No 324
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=35.99 E-value=53 Score=20.60 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=22.4
Q ss_pred HHHhhhcC--CCChHHHHHHHHHHHccCChhhHHHHHHHH
Q 039362 17 CKVLSHLS--NPRIFYWNTVIRGYSKSKNPNKSISLFVKM 54 (440)
Q Consensus 17 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 54 (440)
.+++++++ +|++.+|+-+...+-+..-..++..+.+++
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34566665 677777777666555444445555555544
No 325
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.62 E-value=1e+02 Score=22.15 Aligned_cols=60 Identities=8% Similarity=0.118 Sum_probs=37.8
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 039362 185 EMRDVGSKANEVTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCGA 245 (440)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 245 (440)
.+.+.|.+++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 45566766655433 3444455556666788888888777655666666666677776664
No 326
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.42 E-value=1.1e+02 Score=22.11 Aligned_cols=62 Identities=6% Similarity=0.040 Sum_probs=39.7
Q ss_pred HHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 039362 52 VKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114 (440)
Q Consensus 52 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 114 (440)
+.+.+.|+.++.. -..++..+...+..-.|.++++.+.+.++..+..|....+..+...|-+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3455667655543 2344555555556667888888888877777777766677778877754
No 327
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.30 E-value=90 Score=23.00 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHccCChhhHHHHHHHHHHc--CCCCCcch
Q 039362 28 IFYWNTVIRGYSKSKNPNKSISLFVKMLRA--GVSPDHLT 65 (440)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 65 (440)
...-..++..+...+..-.|.++++.+.+. +...+..|
T Consensus 32 T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aT 71 (162)
T 4ets_A 32 TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIAT 71 (162)
T ss_dssp CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHH
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHH
Confidence 445566778888888899999999999876 54444444
No 328
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.07 E-value=1.6e+02 Score=22.65 Aligned_cols=209 Identities=11% Similarity=0.048 Sum_probs=96.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchh--hHHHHHHHHHhcCCHHHHHHHHhhhhhcC-Cc-hhhHHHHHHHHHhcCCh
Q 039362 204 ACAHLGALDQGRMMLRYMIDKGLSLTLP--LQTSLIDMYAKCGAIKEALIVFHGVEKHQ-SD-VLIWNAMIGGLAMHGFV 279 (440)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~ 279 (440)
..+..|+.+....+++ .|..++.. .-...+...+..|+.+-+..+++.-.... .+ ....+. +...+..|+.
T Consensus 15 ~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~-L~~A~~~~~~ 89 (240)
T 3eu9_A 15 KATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP-LHWATRQGHL 89 (240)
T ss_dssp HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH-HHHHHHHTCH
T ss_pred HHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh-hHHHHHcCCH
Confidence 3456777766555544 44333221 11234555667788877776666543211 11 112223 3334455665
Q ss_pred HHHHHHHHHHHHcCCCccHh---hHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCc---chHHHHHHHHHhcCCHHHHH
Q 039362 280 KESLELFTEMQIVGITPDEI---TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS---EHYACMVDALSRAGQVTEAY 353 (440)
Q Consensus 280 ~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~ 353 (440)
+ +++.+.+.|..++.. ..+.+. ..+..|+.+-+ +.+.+.|..++. ...+.+..+ +..+......
T Consensus 90 ~----~v~~Ll~~g~~~~~~~~~g~t~l~-~A~~~~~~~~~----~~Ll~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~ 159 (240)
T 3eu9_A 90 S----MVVQLMKYGADPSLIDGEGCSCIH-LAAQFGHTSIV----AYLIAKGQDVDMMDQNGMTPLMWA-AYRTHSVDPT 159 (240)
T ss_dssp H----HHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHH-HHHCCSSTTH
T ss_pred H----HHHHHHHcCCCCcccCCCCCCHHH-HHHHcCHHHHH----HHHHhcCCCccccCCCCCcHHHHH-HHhCChHHHH
Confidence 4 344445556555432 223333 33445665543 444444444432 222333333 3345545556
Q ss_pred HHHhcCCCCccHh---HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhc
Q 039362 354 EFICQMPLEPTAS---MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETR 428 (440)
Q Consensus 354 ~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 428 (440)
+++.+.+..++.. .-.+.+...+..|+.+-+..+++.-...+..+..-. +.+....+.|+.+-+.-+++.-.+.
T Consensus 160 ~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 6666554333221 111234445567777766666655332222222212 2334445667776666665544433
No 329
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=33.55 E-value=1.3e+02 Score=24.19 Aligned_cols=55 Identities=13% Similarity=-0.062 Sum_probs=33.7
Q ss_pred HHHHccCChhhHHHHHHHHHHcCCCC-------CcchHHHHHHHhh--chhcHHHHHHHHHHHH
Q 039362 36 RGYSKSKNPNKSISLFVKMLRAGVSP-------DHLTYPFLAKASG--RLAKRELAVAVHAQIA 90 (440)
Q Consensus 36 ~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 90 (440)
...++.|+.+....+++.....+... +..-++.|..++. +.|+.+-+..+++.-.
T Consensus 18 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga 81 (273)
T 2pnn_A 18 FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR 81 (273)
T ss_dssp HHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence 34567788888888888777665433 2233444444442 4577777777666643
No 330
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.46 E-value=1.5e+02 Score=22.12 Aligned_cols=15 Identities=20% Similarity=0.038 Sum_probs=6.8
Q ss_pred HHHHHHHhhcCCCCC
Q 039362 318 WYFFKSLGKRGMVPK 332 (440)
Q Consensus 318 ~~~~~~~~~~~~~~~ 332 (440)
.++.+.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 344444445444443
No 331
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=31.89 E-value=76 Score=18.69 Aligned_cols=30 Identities=10% Similarity=0.188 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHcCCCCCcchHHHHHHHh
Q 039362 44 PNKSISLFVKMLRAGVSPDHLTYPFLAKAS 73 (440)
Q Consensus 44 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 73 (440)
.++|.+.|.+|++..-.+..-+|...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 367788888877654445556777777766
No 332
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.79 E-value=1.3e+02 Score=21.66 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=36.8
Q ss_pred HHHHcCCCccHhhHHHHHHHHHcCC-ChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCH
Q 039362 288 EMQIVGITPDEITFLGLLSACAHGG-LVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQV 349 (440)
Q Consensus 288 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (440)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 7 ~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 45566766665432 3344444444 5667888888887765555555555555666666654
No 333
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.94 E-value=1.6e+02 Score=21.72 Aligned_cols=17 Identities=12% Similarity=-0.177 Sum_probs=9.6
Q ss_pred hcCChHHHHHHHHHHHH
Q 039362 275 MHGFVKESLELFTEMQI 291 (440)
Q Consensus 275 ~~~~~~~a~~~~~~m~~ 291 (440)
+.|+...|..++.+...
T Consensus 87 ~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 87 DFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHCCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 45666666666655543
No 334
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.87 E-value=1.9e+02 Score=22.57 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=12.1
Q ss_pred HHHHHhcCCHHHHHHHHhhhhh
Q 039362 237 IDMYAKCGAIKEALIVFHGVEK 258 (440)
Q Consensus 237 ~~~~~~~g~~~~A~~~~~~~~~ 258 (440)
+..|.+.|.+++|.+++++.-+
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3345555666666666655554
No 335
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=30.45 E-value=2.4e+02 Score=23.63 Aligned_cols=129 Identities=12% Similarity=0.147 Sum_probs=70.5
Q ss_pred ChhhHHHHHHHHHHc-C----CCCCcchHHHH---HHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 039362 43 NPNKSISLFVKMLRA-G----VSPDHLTYPFL---AKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGDI 114 (440)
Q Consensus 43 ~~~~a~~~~~~~~~~-~----~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 114 (440)
+-+.|..+|..+... + ..|+....... +..+.+..++ +++..+.+.|+.|...++.-++..+.+.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p----~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHR----DLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 456777777776543 1 23333222111 1222222222 4666777778887777777777777777778
Q ss_pred HHHHHHhhCCCCC--chhhHH--HHHH----HHHhcCChHHHHHHHhh-CCCCchhhHHHHHHHHHhcCC
Q 039362 115 VYAREVFDGMPTK--MSVSWN--SMLD----GYAKCGEMNMARQVFEL-MPERNVVSWSALIDGYVKCGD 175 (440)
Q Consensus 115 ~~a~~~~~~~~~~--~~~~~~--~l~~----~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 175 (440)
+.+.++|+.+... ....+- +++. ......++++....+.. .+..+......++.......-
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCCc
Confidence 8888888766432 111111 1111 12344578888888877 443344444555544444443
No 336
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=29.54 E-value=1e+02 Score=29.13 Aligned_cols=62 Identities=16% Similarity=0.090 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccC
Q 039362 350 TEAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKR 414 (440)
Q Consensus 350 ~~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 414 (440)
+.|.++.+-|+ .........+.....|++..|.++.+.++..+|.|..+-...+.+|.+.|.
T Consensus 437 ~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 437 DSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 44555555553 223333445556689999999999999999999999988888888877763
No 337
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.25 E-value=3.1e+02 Score=24.54 Aligned_cols=110 Identities=8% Similarity=0.014 Sum_probs=52.2
Q ss_pred CChhhHHHHhhhcC-CCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHH
Q 039362 11 GNIDYSCKVLSHLS-NPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQI 89 (440)
Q Consensus 11 g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 89 (440)
.+.+-|.++-.+.. +.-...|..-.+.+...|++++|..+-....+ |+-.+..|.+.+-..=...|...-.+.+|..+
T Consensus 343 ~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~L 421 (494)
T 1bpo_A 343 QNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGIL 421 (494)
T ss_dssp CCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 45556666655543 22223354455566666777766666544432 23334444433333333334444455555555
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHhh
Q 039362 90 AKTGYESDLFISNSLIHMYGSCGDIVYAREVFD 122 (440)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 122 (440)
.+.| ..+..----+++.-...|+.+-..+.+.
T Consensus 422 l~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 422 LDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccC-ccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 5554 2233333334444444555444444443
No 338
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.24 E-value=1.7e+02 Score=23.00 Aligned_cols=51 Identities=10% Similarity=-0.095 Sum_probs=25.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCccHhh-------HHHHHHHHH--cCCChHHHHHHHHH
Q 039362 273 LAMHGFVKESLELFTEMQIVGITPDEIT-------FLGLLSACA--HGGLVMEAWYFFKS 323 (440)
Q Consensus 273 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~ 323 (440)
.++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3455666666666666555554444221 223333321 44665555555554
No 339
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=28.25 E-value=86 Score=20.47 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 039362 368 LGSLLTGCMNHGKLDLAEIVGKKL 391 (440)
Q Consensus 368 ~~~l~~~~~~~g~~~~a~~~~~~~ 391 (440)
+.-....+.+.|++++|++..+++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 344556666777777777776664
No 340
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=28.06 E-value=1.4e+02 Score=23.06 Aligned_cols=11 Identities=9% Similarity=-0.242 Sum_probs=4.4
Q ss_pred cCCChHHHHHH
Q 039362 310 HGGLVMEAWYF 320 (440)
Q Consensus 310 ~~~~~~~a~~~ 320 (440)
+.|+.+-+..+
T Consensus 219 ~~~~~~~v~~L 229 (240)
T 3eu9_A 219 QRKNVWMINHL 229 (240)
T ss_dssp HTTCHHHHHHH
T ss_pred HcCcHHHHHHH
Confidence 33444433333
No 341
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.69 E-value=1.3e+02 Score=21.58 Aligned_cols=58 Identities=5% Similarity=-0.150 Sum_probs=32.6
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 039362 16 SCKVLSHLSNPRIFYWNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74 (440)
Q Consensus 16 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 74 (440)
..+.+....-.-...-..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+.
T Consensus 6 ~~~~L~~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~ 63 (145)
T 3eyy_A 6 WKSDLRQRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLE 63 (145)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Confidence 344444433222333445566666666 7899999999988765455544333333333
No 342
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=27.49 E-value=3.1e+02 Score=23.85 Aligned_cols=332 Identities=11% Similarity=0.089 Sum_probs=153.7
Q ss_pred HHHHhhchhcHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHhcCCHHHHHHHhhCCCCC---chhhHHHHHHHHHhcC
Q 039362 69 LAKASGRLAKRELAVAVHAQIAKTGYESDLF--ISNSLIHMYGSCGDIVYAREVFDGMPTK---MSVSWNSMLDGYAKCG 143 (440)
Q Consensus 69 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~ 143 (440)
.+...+..|+.+-+..++ +.|..++.. .....+...+..|+.+-+..+++.-... +.... +.+...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCC
Confidence 444456678877655544 445544422 1123445566788888888887754332 22212 2344556778
Q ss_pred ChHHHHHHHhhCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCChHHHHHH
Q 039362 144 EMNMARQVFELMPERN---VVSWSALIDGYVKCGDYKEALVIFEEMRDVGSKA---NEVTLVSVLCACAHLGALDQGRMM 217 (440)
Q Consensus 144 ~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 217 (440)
+.+-+.-+++.-..++ ....+. +...+..|+.+-+..+++ .+..+ +....+ .+...+..|+.+-+.
T Consensus 92 ~~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~-- 163 (437)
T 1n11_A 92 HTNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALLE----KEASQACMTKKGFT-PLHVAAKYGKVRVAE-- 163 (437)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCC-HHHHHHHTTCHHHHH--
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCC-HHHHHHHcCCHHHHH--
Confidence 8877777776644322 222222 334456677766555554 33222 222222 233445667765444
Q ss_pred HHHHHHcCCCCchhh--HHHHHHHHHhcCCHHHHHHHHhhhhhc-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 039362 218 LRYMIDKGLSLTLPL--QTSLIDMYAKCGAIKEALIVFHGVEKH-QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGI 294 (440)
Q Consensus 218 ~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 294 (440)
.+.+.+..++... -...+...+..|+.+-...+++.-... .++...++.+ ...+..|+.+-+ +.+.+.|.
T Consensus 164 --~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~----~~Ll~~g~ 236 (437)
T 1n11_A 164 --LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEVA----RSLLQYGG 236 (437)
T ss_dssp --HHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHHH----HHHHHTTC
T ss_pred --HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHH----HHHHHcCC
Confidence 3444554333211 112234445667776655555443211 1222223333 334456665443 34445554
Q ss_pred CccHh---hHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCc---chHHHHHHHHHhcCCHHHHHHHHhcC-CCC-ccHh
Q 039362 295 TPDEI---TFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKS---EHYACMVDALSRAGQVTEAYEFICQM-PLE-PTAS 366 (440)
Q Consensus 295 ~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-p~~~ 366 (440)
.++.. ..+.+. ..+..|+.+-. +.+.+.|..++. ...+. +...+..|+.+-+.-+++.- .+. .+..
T Consensus 237 ~~~~~~~~g~t~L~-~A~~~g~~~~v----~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 310 (437)
T 1n11_A 237 SANAESVQGVTPLH-LAAQEGHAEMV----ALLLSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVLIKHGVMVDATTRM 310 (437)
T ss_dssp CTTCCCTTCCCHHH-HHHHTTCHHHH----HHHHTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHHTCCTTCCCSS
T ss_pred CCCCCCCCCCCHHH-HHHHCCCHHHH----HHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCccCCCCCCC
Confidence 44332 222333 33445665444 334444433322 11222 33345677777666666543 111 1111
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHhccChHHHHHHHHHHHhcCCcc
Q 039362 367 MLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRYVGLSNVYAIFKRWDEARTTREAMETRGVKK 432 (440)
Q Consensus 367 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 432 (440)
-.+ .+...+..|+.+-+.-+++.-...+..+..-.+.+- .....|+.+ +.+.+++.|..+
T Consensus 311 g~t-~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~-~A~~~g~~~----iv~~Ll~~ga~~ 370 (437)
T 1n11_A 311 GYT-PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH-QAAQQGHTD----IVTLLLKNGASP 370 (437)
T ss_dssp CCC-HHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCS
T ss_pred CCC-HHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHH-HHHHCChHH----HHHHHHHCcCCC
Confidence 112 233344677777665555543333322222223332 233456654 444445565543
No 343
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.29 E-value=74 Score=22.68 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=28.8
Q ss_pred HHHHHhhchhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 039362 68 FLAKASGRLAKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113 (440)
Q Consensus 68 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 113 (440)
.++..+...+..-.|.++++.+.+.++..+..|....+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3445555555555677777777777666666665556666666664
No 344
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=27.16 E-value=61 Score=19.06 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=16.5
Q ss_pred hcCChHHHHHHHHHHHHcC-CCccH
Q 039362 275 MHGFVKESLELFTEMQIVG-ITPDE 298 (440)
Q Consensus 275 ~~~~~~~a~~~~~~m~~~~-~~p~~ 298 (440)
..-+++.|...|.++...| ++|+.
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 3567888888888887655 45443
No 345
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.92 E-value=2.9e+02 Score=23.36 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCHHHHHHHhhCCCCC
Q 039362 102 NSLIHMYGSCGDIVYAREVFDGMPTK 127 (440)
Q Consensus 102 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 127 (440)
..++.-|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 44555555666666666666666544
No 346
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.43 E-value=1.3e+02 Score=19.38 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=14.5
Q ss_pred CCHHHHHHHhhCCCCCchhhHHHHHHHHHhcC
Q 039362 112 GDIVYAREVFDGMPTKMSVSWNSMLDGYAKCG 143 (440)
Q Consensus 112 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 143 (440)
...++|..+++.+..++...|..++.++...+
T Consensus 50 t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~ 81 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKDNDSYVSFYNALLHEG 81 (94)
T ss_dssp SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcC
Confidence 34444444444444444444444444444433
No 347
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.22 E-value=89 Score=22.25 Aligned_cols=44 Identities=9% Similarity=-0.053 Sum_probs=29.4
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 039362 31 WNTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLTYPFLAKASG 74 (440)
Q Consensus 31 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 74 (440)
-..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+.
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~ 59 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLA 59 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 44567777777788899999999988765555544333333333
No 348
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.19 E-value=1e+02 Score=21.66 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=19.4
Q ss_pred hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 039362 77 AKRELAVAVHAQIAKTGYESDLFISNSLIHMYGSCGD 113 (440)
Q Consensus 77 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 113 (440)
+..-.|.++++.+.+.++..+..|....+..+...|-
T Consensus 24 ~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 24 DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3344455555555555555555554445555555554
No 349
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.56 E-value=72 Score=22.42 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=22.2
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHcCCCCCcch
Q 039362 32 NTVIRGYSKSKNPNKSISLFVKMLRAGVSPDHLT 65 (440)
Q Consensus 32 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 65 (440)
..++..+...+..-.|.++++.+.+.+...+..|
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~T 47 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTT 47 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhh
Confidence 3456666666777788888888877654334433
No 350
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.43 E-value=3.3e+02 Score=23.60 Aligned_cols=294 Identities=13% Similarity=0.106 Sum_probs=140.1
Q ss_pred HHHHHHhcCCHHHHHHHhhCCCCCchh--hHHHHHHHHHhcCChHHHHHHHhhCCCC---chhhHHHHHHHHHhcCCHHH
Q 039362 104 LIHMYGSCGDIVYAREVFDGMPTKMSV--SWNSMLDGYAKCGEMNMARQVFELMPER---NVVSWSALIDGYVKCGDYKE 178 (440)
Q Consensus 104 l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 178 (440)
.+...+..|+.+-+..+++.-..++.. ...+.+...+..|+.+-+.-+++.-... +....+. +...+..|+.+-
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~ 95 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIGHTNM 95 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHHTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHCCCHHH
Confidence 445567789999998888865443221 1123455566778888888777764432 2222233 344456677654
Q ss_pred HHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---hhhHHHHHHHHHhcCCHHHHHHH
Q 039362 179 ALVIFEEMRDVGSKANE---VTLVSVLCACAHLGALDQGRMMLRYMIDKGLSLT---LPLQTSLIDMYAKCGAIKEALIV 252 (440)
Q Consensus 179 a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 252 (440)
+.- +.+.|..|+. ...+ .+...+..|+.+.+..+++ .+..++ ..-. ..+...+..|+.+-+..+
T Consensus 96 v~~----Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~L 165 (437)
T 1n11_A 96 VKL----LLENNANPNLATTAGHT-PLHIAAREGHVETVLALLE----KEASQACMTKKGF-TPLHVAAKYGKVRVAELL 165 (437)
T ss_dssp HHH----HHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHTTCHHHHHHH
T ss_pred HHH----HHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHcCCHHHHHHH
Confidence 443 3444544432 1222 2334456677766555554 332221 1111 233444567787766666
Q ss_pred Hhhhhhc-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHh---hHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 039362 253 FHGVEKH-QSDVLIWNAMIGGLAMHGFVKESLELFTEMQIVGITPDEI---TFLGLLSACAHGGLVMEAWYFFKSLGKRG 328 (440)
Q Consensus 253 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 328 (440)
++.-... ..+....+. +...+..|+.+ +++.+.+.|..|+.. ..+.+ ...+..|+.+-+..++ +.|
T Consensus 166 l~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll----~~g 235 (437)
T 1n11_A 166 LERDAHPNAAGKNGLTP-LHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEVARSLL----QYG 235 (437)
T ss_dssp HHTTCCTTCCCSSCCCH-HHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHHHHHHH----HTT
T ss_pred HhCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHH----HcC
Confidence 6543211 112122222 33334556654 344445555444432 12233 3334556665444443 443
Q ss_pred CCCCcc---hHHHHHHHHHhcCCHHHHHHHHhcCCCCc---cHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchH
Q 039362 329 MVPKSE---HYACMVDALSRAGQVTEAYEFICQMPLEP---TASMLGSLLTGCMNHGKLDLAEIVGKKLVELQPDHDGRY 402 (440)
Q Consensus 329 ~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 402 (440)
..++.. ..+. +...+..|..+-..-+++.- ..+ +..-... +...+..|+.+-+..+++.-...+..+..-.
T Consensus 236 ~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~ 312 (437)
T 1n11_A 236 GSANAESVQGVTP-LHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTP-LHLVAQEGHVPVADVLIKHGVMVDATTRMGY 312 (437)
T ss_dssp CCTTCCCTTCCCH-HHHHHHTTCHHHHHHHHTTT-CCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHHTCCTTCCCSSCC
T ss_pred CCCCCCCCCCCCH-HHHHHHCCCHHHHHHHHhcC-CCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCccCCCCCCCCC
Confidence 333221 1222 33345677776666666543 111 2111222 2334466777766666555433443333223
Q ss_pred HHHHHHHHhccChHHHHHHH
Q 039362 403 VGLSNVYAIFKRWDEARTTR 422 (440)
Q Consensus 403 ~~l~~~~~~~g~~~~A~~~~ 422 (440)
+.+ ......|+.+-+.-++
T Consensus 313 t~L-~~A~~~g~~~~v~~Ll 331 (437)
T 1n11_A 313 TPL-HVASHYGNIKLVKFLL 331 (437)
T ss_dssp CHH-HHHHHSSCSHHHHHHH
T ss_pred CHH-HHHHHcCcHHHHHHHH
Confidence 333 3334567665444433
No 351
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=25.24 E-value=3.2e+02 Score=23.40 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 039362 199 VSVLCACAHLGALDQGRMMLRYM 221 (440)
Q Consensus 199 ~~l~~~~~~~~~~~~a~~~~~~~ 221 (440)
..++.-|...|+.++|...++++
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34555555556666665555554
No 352
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.10 E-value=2.4e+02 Score=21.73 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=13.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC
Q 039362 169 GYVKCGDYKEALVIFEEMRDVGSKA 193 (440)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~~~~~ 193 (440)
..+..|+.+-+..+++.+.+.|..+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3445566666555555554444433
No 353
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.74 E-value=2.1e+02 Score=21.08 Aligned_cols=54 Identities=13% Similarity=-0.057 Sum_probs=35.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCc--cHhhHHHHHH-H-----HHcCCChHHHHHHHHHHhhc
Q 039362 274 AMHGFVKESLELFTEMQIVGITP--DEITFLGLLS-A-----CAHGGLVMEAWYFFKSLGKR 327 (440)
Q Consensus 274 ~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~~ 327 (440)
...|++-+|-++|+..-.....+ ....|..||+ . ..+.|+...|..++.+....
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34488888888888876544344 4455666666 2 23568888888888877664
No 354
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.67 E-value=3.8e+02 Score=24.01 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=51.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCHH
Q 039362 271 GGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRGMVPKSEHYACMVDALSRAGQVT 350 (440)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 350 (440)
..+...|++++|.++-.... .|+--+..|.+.+-..-...|...-...+|..+.+.| +.+..---.+++.-...|+.+
T Consensus 369 ~~l~~~g~y~~AA~~aA~sP-~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~ 446 (494)
T 1bpo_A 369 NALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQ 446 (494)
T ss_dssp HHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHH
Confidence 34444555555554433321 2223333344333332233344444555555555554 233322234455555666666
Q ss_pred HHHHHHhcCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 039362 351 EAYEFICQMPLEPTASMLGSLLTGCMNHGKLDLAEIVGKKL 391 (440)
Q Consensus 351 ~a~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 391 (440)
-..+++.+-++..+...=..+ +..+..-|..+|.++
T Consensus 447 llekWl~e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 447 LLEKWLKEDKLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHHTCSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred HHHHHHhcCCccccHHhHhhh-----hhcCHHHHHHHHHHc
Confidence 666666665544443322211 233455555555544
No 355
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=24.36 E-value=1.9e+02 Score=24.47 Aligned_cols=106 Identities=8% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhchhcHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhc----CCHHHHHHHh
Q 039362 49 SLFVKMLRAGVSPDHLTYPFLAKASGRLAKRELAVAVHAQIAKTGYESD---LFISNSLIHMYGSC----GDIVYAREVF 121 (440)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~----g~~~~a~~~~ 121 (440)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++++.+...|.... ..+..+++..+... .++++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q ss_pred hCCCCCc---hhhHHHHHHHHHhcCChHHHHHHHhh
Q 039362 122 DGMPTKM---SVSWNSMLDGYAKCGEMNMARQVFEL 154 (440)
Q Consensus 122 ~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~ 154 (440)
+.++..+ ...-..+-.++.-...+..+...+..
T Consensus 310 ~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~~h~~~ 345 (345)
T 2qfz_A 310 QNLPTAHWDDEDISLLLAEAYRLKFAFADAPNHYKK 345 (345)
T ss_dssp TSCSCTTCCHHHHHHHHHHHHHHHHHC---------
T ss_pred HcCCCcCCchhHHHHHHHHHHHHHHHHHhhHhhccC
No 356
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=24.08 E-value=93 Score=24.44 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCC-----CCc-----cHhHHHHHHHHHHhcC---------ChhHHHHHHHHHHhcC--CCCCchHHHHHH
Q 039362 349 VTEAYEFICQMP-----LEP-----TASMLGSLLTGCMNHG---------KLDLAEIVGKKLVELQ--PDHDGRYVGLSN 407 (440)
Q Consensus 349 ~~~a~~~~~~~~-----~~p-----~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~~~~--~~~~~~~~~l~~ 407 (440)
.+.|..++.+|+ +-| ...-+..+..+|.+.| +.+.-.++++..++.+ .--|..|.+.++
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 577888888883 122 3466788888888876 5566777888888877 335667888776
Q ss_pred HHHhccChHHHHHHHHHHHh
Q 039362 408 VYAIFKRWDEARTTREAMET 427 (440)
Q Consensus 408 ~~~~~g~~~~A~~~~~~~~~ 427 (440)
--.-.-+.++..+++..+.+
T Consensus 227 k~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 65556688888888887754
No 357
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=23.85 E-value=2.8e+02 Score=22.21 Aligned_cols=39 Identities=10% Similarity=0.035 Sum_probs=18.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 039362 202 LCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMY 240 (440)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 240 (440)
+...-+.++++++....+.+.+.+...+..--+.|..+|
T Consensus 11 AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAY 49 (248)
T 3uzd_A 11 ARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAY 49 (248)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 334445555555555555555554444444444444333
No 358
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.51 E-value=1.4e+02 Score=18.53 Aligned_cols=59 Identities=14% Similarity=0.238 Sum_probs=33.3
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 039362 185 EMRDVGSKANEVTLVSVLCACAHLG-ALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244 (440)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 244 (440)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..+....+..+...|
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3555666665544 33445554443 45566777777766654455555555555555544
No 359
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=23.48 E-value=1.3e+02 Score=18.15 Aligned_cols=44 Identities=20% Similarity=0.129 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHHc
Q 039362 266 WNAMIGGLAMHGFVKESLELFTEMQIVGITPDEITFLGLLSACAH 310 (440)
Q Consensus 266 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 310 (440)
++.++..++...-.++++..+.++.+.| ..+..+|..-++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4455555555555667777777777666 4445555555555444
No 360
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=23.28 E-value=2.8e+02 Score=21.98 Aligned_cols=18 Identities=17% Similarity=-0.040 Sum_probs=12.5
Q ss_pred HhcCChhHHHHHHHHHHh
Q 039362 376 MNHGKLDLAEIVGKKLVE 393 (440)
Q Consensus 376 ~~~g~~~~a~~~~~~~~~ 393 (440)
--.+++++|..+.+++.+
T Consensus 184 Eil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 184 EILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HTSCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 357788888777776654
No 361
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.05 E-value=2e+02 Score=20.21 Aligned_cols=45 Identities=7% Similarity=0.035 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHccC-ChhhHHHHHHHHHHcCCCCCcchHHHHHHHh
Q 039362 29 FYWNTVIRGYSKSK-NPNKSISLFVKMLRAGVSPDHLTYPFLAKAS 73 (440)
Q Consensus 29 ~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 73 (440)
..-..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 63 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQF 63 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 34455677777776 7889999999998876544544433333333
No 362
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.43 E-value=3.5e+02 Score=22.72 Aligned_cols=16 Identities=0% Similarity=-0.263 Sum_probs=9.0
Q ss_pred HHhcCCHHHHHHHHhc
Q 039362 343 LSRAGQVTEAYEFICQ 358 (440)
Q Consensus 343 ~~~~~~~~~a~~~~~~ 358 (440)
.+..|+.+-+..+++.
T Consensus 180 A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 180 AMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3455666666555553
No 363
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=22.42 E-value=1.1e+02 Score=17.13 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHHHcC
Q 039362 44 PNKSISLFVKMLRAG 58 (440)
Q Consensus 44 ~~~a~~~~~~~~~~~ 58 (440)
..+|+++++.+.+.|
T Consensus 9 v~RaiELle~lq~sg 23 (53)
T 1zl8_A 9 VQRILELMEHVQKTG 23 (53)
T ss_dssp HHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHcC
Confidence 344555555554444
No 364
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=21.58 E-value=3.2e+02 Score=22.06 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=27.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh-cCCHHHHHHHHhhh
Q 039362 200 SVLCACAHLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAK-CGAIKEALIVFHGV 256 (440)
Q Consensus 200 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 256 (440)
.++....+.++++++....+.+.+.+...+..--+.|..+|-. .|....+++++..+
T Consensus 36 ~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissi 93 (261)
T 3ubw_A 36 YQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSI 93 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHH
Confidence 3444445556666666666665555544554444444444422 23333444444433
No 365
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=21.47 E-value=5.8e+02 Score=26.67 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=17.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 039362 207 HLGALDQGRMMLRYMIDKGLSLTLPLQTSLIDMYAKCG 244 (440)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 244 (440)
..+++..|.+++.++.+.. ++...+..++..+...|
T Consensus 1296 ~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG 1331 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC
Confidence 4455555555555554442 34444444444444333
No 366
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.88 E-value=1.8e+02 Score=18.97 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=28.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCccHhhHHHHHHHHH-----cCCChHHHHHHHHHHhh
Q 039362 274 AMHGFVKESLELFTEMQIVGITPDEITFLGLLSACA-----HGGLVMEAWYFFKSLGK 326 (440)
Q Consensus 274 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~ 326 (440)
...|++-+|-+++++.-.....|....+..+|+... +.|+. |..++.+...
T Consensus 12 fn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 12 WRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 344777777777777655542233445555554322 34555 6666665554
No 367
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=20.86 E-value=2.1e+02 Score=24.12 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=35.3
Q ss_pred HHHHHHHcCCCccHhhHHHHHHHHHcCCChHHHHHHHHHHhhcC
Q 039362 285 LFTEMQIVGITPDEITFLGLLSACAHGGLVMEAWYFFKSLGKRG 328 (440)
Q Consensus 285 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 328 (440)
+++.+.+.|+.|...++..++..+.+.=.++.+..+|+.+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 45556677888888888888888887778888999999888765
No 368
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.78 E-value=1.1e+02 Score=22.75 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=18.0
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHH
Q 039362 31 WNTVIRGYSKSKNPNKSISLFVKML 55 (440)
Q Consensus 31 ~~~l~~~~~~~~~~~~a~~~~~~~~ 55 (440)
...++.-|...|+.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4456677777788888888877764
No 369
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.73 E-value=1.9e+02 Score=19.13 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCCccHhhHHHHHHHHHcCC
Q 039362 282 SLELFTEMQIVGITPDEITFLGLLSACAHGG 312 (440)
Q Consensus 282 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 312 (440)
|.++.+++...|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 5566666777777777777777776665444
No 370
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.02 E-value=1e+02 Score=19.37 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 039362 369 GSLLTGCMNHGKLDLAEIVGKKLVE 393 (440)
Q Consensus 369 ~~l~~~~~~~g~~~~a~~~~~~~~~ 393 (440)
..+++-|+..|+++.|..+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3567778889999999999988775
Done!