BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039363
         (521 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
 pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
           With Nad+
 pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
           Toluene Dioxygenase
          Length = 410

 Score = 30.0 bits (66), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 14/95 (14%)

Query: 94  DLIVATVLSAMIGSFAMGILANLPLGLAPGMGANAYLAYNLVGFHGSGSISYQTAMAVVL 153
           D ++  VL   IG++  G+L  L        G    L   +VGF G G +       V+ 
Sbjct: 176 DELLVRVLGRRIGAWLRGLLTEL--------GVQVELGTGVVGFSGEGQLEQ-----VMA 222

Query: 154 VEGCAFLAISAF-GLRAQLARLIPQPVRLACAAGI 187
            +G +F+A SA   + A+ A  + +   LAC  G+
Sbjct: 223 SDGRSFVADSALICVGAEPADQLARQAGLACDRGV 257


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,263,312
Number of Sequences: 62578
Number of extensions: 497952
Number of successful extensions: 881
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 2
length of query: 521
length of database: 14,973,337
effective HSP length: 103
effective length of query: 418
effective length of database: 8,527,803
effective search space: 3564621654
effective search space used: 3564621654
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)