Query 039363
Match_columns 521
No_of_seqs 201 out of 1883
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 15:08:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 1.2E-44 4E-49 384.5 28.1 380 13-486 1-407 (429)
2 3qe7_A Uracil permease; uracil 61.5 53 0.0018 34.1 11.5 124 360-483 45-201 (429)
3 1lbj_A Motilin; A-helix, B-tur 13.9 65 0.0022 19.6 1.0 14 494-507 7-20 (26)
4 1bts_A BAND 3 anion transport 12.5 1.5E+02 0.0052 18.2 2.4 20 99-118 6-25 (26)
5 3dl8_C SECE; RECA-type ATPase 7.9 6.3E+02 0.022 18.5 5.0 16 438-453 13-28 (65)
6 2lor_A Transmembrane protein 1 10.0 93 0.0032 25.7 0.0 23 251-273 51-77 (108)
7 3din_D Preprotein translocase 6.1 5.9E+02 0.02 18.7 4.0 14 438-451 13-26 (65)
8 2jln_A MHP1; hydantoin, transp 4.3 5.2E+02 0.018 26.8 3.7 20 465-484 428-447 (501)
9 1xwr_A Regulatory protein CII; 3.3 3.7E+02 0.013 21.7 1.0 22 497-518 18-39 (97)
10 2zjs_E Preprotein translocase 3.0 9.6E+02 0.033 17.1 3.0 19 439-457 15-33 (60)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=1.2e-44 Score=384.53 Aligned_cols=380 Identities=16% Similarity=0.175 Sum_probs=285.4
Q ss_pred hhhccccccccccchhhHHHHHHHHHHHHHHHHhhhhhHhhhcCCCccccCCCCCCCCCCCCCCCCCCCcccchhhhhhh
Q 039363 13 FIGKHFKLEVRKSCFTKELRAGTATFLTMAYIITVNATIIADSGGTCSVADCSVPMNQTASPDCTLKPNVGYENCLAKTR 92 (521)
Q Consensus 13 ~~~~~f~~~~~~~~~~~ei~aGl~~~lam~y~~~v~P~ila~aG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 92 (521)
++||+|+++||. +++||+++|+||+++|+|++++||.++ |+| +
T Consensus 1 ~~~~~~~~~~~~-~~~~~i~~GlQh~lam~~~~v~~Plil---Gl~--------------------~------------- 43 (429)
T 3qe7_A 1 MTRRAIGVSERP-PLLQTIPLSLQHLFAMFGATVLVPVLF---HIN--------------------P------------- 43 (429)
T ss_dssp ---CCBCTTCCC-CHHHHHHHHHHHHHHHHHHHHHHHHTT---TSC--------------------H-------------
T ss_pred CCCcccCcccCC-CHHHHHHHHHHHHHHHHHHHHHhHHHh---CCC--------------------H-------------
Confidence 368999999986 799999999999999999999999999 775 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc--CCCccCCccchhHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHh--hhH
Q 039363 93 SDLIVATVLSAMIGSFAMGILAN--LPLGLAPGMGANAYLAYNLVGFHGSGSISYQTAMAVVLVEGCAFLAISAF--GLR 168 (521)
Q Consensus 93 ~~~i~at~l~a~igtll~g~~a~--~P~~~~p~~G~~a~~~~~vv~~~g~~~~~~~~al~a~~l~Gli~lllg~~--~l~ 168 (521)
.+++++++++|++|++++| +|..+++++ ++++..... + . ++|+.++++++++|+++++++++ |+|
T Consensus 44 ----~~~l~~agi~Tllq~~~~~~~lP~~~G~sf---afi~~~~~i--~-~-~g~~~~~gavi~aGli~ill~~~~~~~g 112 (429)
T 3qe7_A 44 ----ATVLLFNGIGTLLYLFICKGKIPAYLGSSF---AFISPVLLL--L-P-LGYEVALGGFIMCGVLFCLVSFIVKKAG 112 (429)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTTCCCCCEEECG---GGHHHHHHH--G-G-GCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCCCeEecChH---HHHHHHHHH--H-h-cCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 2688999999999998864 555555543 333222211 1 1 57999999999999999999998 765
Q ss_pred -HHHHhcCChhHHHHHHHHHHHHHHHHhhhhccccceecCCCchhhHhhhcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 039363 169 -AQLARLIPQPVRLACAAGIGLFIAFVGLQLHQGVGLVGPDPSTLLTITACADNDPVTGACIGGKMRSPTFWLGLAGFLI 247 (521)
Q Consensus 169 -g~l~~~iP~~V~~G~~~gIGl~I~~igL~~~~glGi~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~l~~~~l~l 247 (521)
+|++|++||.|+..+++.||+.++..+.++.. + . ... + +..++++++++++++++
T Consensus 113 ~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~--~-~-~~~------~--------------~~~~~~~~~la~~tl~i 168 (429)
T 3qe7_A 113 TGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAG--L-L-PAE------G--------------QTPDSKTIIISITTLAV 168 (429)
T ss_dssp SHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHT--S-S-CBT------T--------------BCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhcc--c-c-CCC------C--------------ccccHHHHHHHHHHHHH
Confidence 79999999999888888888888888777641 1 0 000 0 13355677888888887
Q ss_pred HHHHHhhcccc-----hhHHHHHHHHHHHHHhcCcccccCCCCCCCccccccccccccCccccccccccccchhhhHHHH
Q 039363 248 TCYGLMKEIKG-----SMIYGILFVTLISWIRGTAVTYFPHSPQGDANYNYFQKIVDFHKIQSTAGVISFTNFNHSEVWV 322 (521)
Q Consensus 248 ~~~l~~~~ip~-----aiLigIivgtvia~~lg~~v~~~~~~~~g~~~~~~~~~~~~lP~~~~~~~~~d~~~~~~~~~~~ 322 (521)
++.+ .|+.|+ ++|++++++|++++.+|. .|+++ ++.. +|+++|++. .++|||+. +.
T Consensus 169 ii~~-~~~~kg~~~~~aiLigivvg~~~a~~~G~--~d~~~--v~~a------~~~~lP~~~--~P~f~~~~------i~ 229 (429)
T 3qe7_A 169 TVLG-SVLFRGFLAIIPILIGVLVGYALSFAMGI--VDTTP--IINA------HWFALPTLY--TPRFEWFA------IL 229 (429)
T ss_dssp HHHH-HHSSSTTTTTHHHHHHHHHHHHHHHHHHH--TTSSH--HHHS------CSSCCCCCC--CCCCCHHH------HH
T ss_pred HHHH-HHHhcccchhhHHHHHHHHHHHHHHHhcC--CCccc--cccc------ccccccCCC--CCcccHHH------HH
Confidence 6555 444444 789999999999999985 34432 2211 467788753 33566653 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCC-CcccCCceeeecchhhhhhhccCCCccchhhhhhhhhh-cCcccchHH
Q 039363 323 ALATLLYVDVLATTGTLYTMAEIGGFVNEQG-KFEGEYIAYMVDASSTIVGSALGVSPIATYVESSAGIR-EGGRTGLTA 400 (521)
Q Consensus 323 ~~~~~~lv~~~etigt~~ala~~~g~~d~~~-~~~~~~~~l~adGlanii~~lfG~~P~ts~~~Sa~~v~-~GarTgla~ 400 (521)
.++++++++++|++++..++++.+| +|. ++++.||++++||++|+++++||++|+|+|+||++.++ +|+|||++.
T Consensus 230 ~i~~i~lV~~~Eslg~~~av~~~~g---~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g~i~~tg~~sr~~~ 306 (429)
T 3qe7_A 230 TILPAALVVIAEHVGHLVVTANIVK---KDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVI 306 (429)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHT---SCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHTBCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHHHHHhcCCcchHHH
Confidence 5678889999999999999988653 444 56789999999999999999999999999999998775 799999998
Q ss_pred HHHHHHHHHHHh---HHHHHhhcChhhHHHH-HHHHHHHHHHHhhhh-----ccccchhHHHHHHHHHHH------HHHH
Q 039363 401 VIVGLYFFISLF---FTPLLTSVPPWAVGPS-LVMVGVMMMKVVKDI-----DWGSIKHAVPAFVTILLM------PLTY 465 (521)
Q Consensus 401 v~~g~~~ll~lf---l~pli~~IP~~al~~a-LI~vG~~m~~~i~~i-----~~~~~~~~~~a~vtii~~------~lt~ 465 (521)
.++|+++++..+ +.++++.||.++++++ ++++|.+..+++|.+ |+++++|.+...+.+.+- |+..
T Consensus 307 ~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~~~~~~ 386 (429)
T 3qe7_A 307 GGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGA 386 (429)
T ss_dssp HHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHhhhh
Confidence 888888776532 5679999999999999 568898888776654 566666665443332211 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 039363 466 SIAYGIIGGIGLYIALSLYDC 486 (521)
Q Consensus 466 ~i~~GI~~G~i~~i~l~l~~~ 486 (521)
-..+|+..|.++++++|+...
T Consensus 387 ~~~~gi~~~~~~ai~ln~~l~ 407 (429)
T 3qe7_A 387 AELKGMALATIVGIGLSLIFK 407 (429)
T ss_dssp CCCCHHHHHHHHHHHHHHHHT
T ss_pred hccCcHHHHHHHHHHHHHHhc
Confidence 135799999999999998874
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=61.51 E-value=53 Score=34.07 Aligned_cols=124 Identities=16% Similarity=0.270 Sum_probs=65.2
Q ss_pred ceeeecchhhhhhhccCCC--cc----c-hhhhhhhhhh-cCcccchHH-HHHHHHHHHH-HhHH-----HHHhhcChhh
Q 039363 360 IAYMVDASSTIVGSALGVS--PI----A-TYVESSAGIR-EGGRTGLTA-VIVGLYFFIS-LFFT-----PLLTSVPPWA 424 (521)
Q Consensus 360 ~~l~adGlanii~~lfG~~--P~----t-s~~~Sa~~v~-~GarTgla~-v~~g~~~ll~-lfl~-----pli~~IP~~a 424 (521)
..+++-|+++++=+++++. |. + +|.--...+. .|=+.-+.+ ++.|+++++. .++. -+.+.+|..+
T Consensus 45 ~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~Ppvv 124 (429)
T 3qe7_A 45 TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAA 124 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCee
Confidence 4566667777776665433 32 1 2211111111 111122223 4445554443 3322 4889999988
Q ss_pred HHHHHHHHHHHHHH-Hhhhh-------ccccchhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 039363 425 VGPSLVMVGVMMMK-VVKDI-------DWGSIKHAVPAFVTILLMPLT----------YSIAYGIIGGIGLYIALSL 483 (521)
Q Consensus 425 l~~aLI~vG~~m~~-~i~~i-------~~~~~~~~~~a~vtii~~~lt----------~~i~~GI~~G~i~~i~l~l 483 (521)
+|+.+.++|+.... .++.. ++.+..+...++++++.+.+. +.+..|+.+|.+++..+..
T Consensus 125 iG~~i~~IGl~l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~kg~~~~~aiLigivvg~~~a~~~G~ 201 (429)
T 3qe7_A 125 MGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGI 201 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhcC
Confidence 99988888887763 23322 122223444444544433322 2577788888888777654
No 3
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=13.89 E-value=65 Score=19.62 Aligned_cols=14 Identities=43% Similarity=0.679 Sum_probs=11.6
Q ss_pred HhhhhhhHhhhhhh
Q 039363 494 FLKLRRMVAKEQNQ 507 (521)
Q Consensus 494 ~~~~~~~~~~~~~~ 507 (521)
.+.+.+|-.||||.
T Consensus 7 ~selqr~qEkErNk 20 (26)
T 1lbj_A 7 YGELQRMQEKERNK 20 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 36788999999996
No 4
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=12.48 E-value=1.5e+02 Score=18.21 Aligned_cols=20 Identities=10% Similarity=0.287 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 039363 99 TVLSAMIGSFAMGILANLPL 118 (521)
Q Consensus 99 t~l~a~igtll~g~~a~~P~ 118 (521)
+++++.++.+++++++.-|+
T Consensus 6 ~i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 6 LLISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHhcccC
Confidence 45778888888888887775
No 5
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=7.88 E-value=6.3e+02 Score=18.54 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=0.4
Q ss_pred HHhhhhccccchhHHH
Q 039363 438 KVVKDIDWGSIKHAVP 453 (521)
Q Consensus 438 ~~i~~i~~~~~~~~~~ 453 (521)
.++|++.|-+++|...
T Consensus 13 ~ElkKV~WPtr~e~~~ 28 (65)
T 3dl8_C 13 DELKRVVWPSRELVVK 28 (65)
T ss_dssp ---------------C
T ss_pred HHHhcccCcCHHHHHH
Confidence 3577888877777643
No 6
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=10.00 E-value=93 Score=25.74 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=15.7
Q ss_pred HHhhcccc----hhHHHHHHHHHHHHH
Q 039363 251 GLMKEIKG----SMIYGILFVTLISWI 273 (521)
Q Consensus 251 l~~~~ip~----aiLigIivgtvia~~ 273 (521)
+..||+|. .+|++++++++.+|-
T Consensus 51 ~vqrklpYp~qwniLVs~v~~svaSY~ 77 (108)
T 2lor_A 51 FIQRKFPYPLQWSLLVAVVAGSVVSYG 77 (108)
Confidence 35677775 567777777777664
No 7
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=6.10 E-value=5.9e+02 Score=18.70 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=9.6
Q ss_pred HHhhhhccccchhH
Q 039363 438 KVVKDIDWGSIKHA 451 (521)
Q Consensus 438 ~~i~~i~~~~~~~~ 451 (521)
.++|++.|-+++|.
T Consensus 13 ~ElkKV~WPtr~e~ 26 (65)
T 3din_D 13 AEAKKISWPSRKEL 26 (65)
T ss_dssp HHHHHHHHHHCCCC
T ss_pred HHHhcccCcCHHHH
Confidence 46788888666654
No 8
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=4.33 E-value=5.2e+02 Score=26.79 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039363 465 YSIAYGIIGGIGLYIALSLY 484 (521)
Q Consensus 465 ~~i~~GI~~G~i~~i~l~l~ 484 (521)
++...|+.++.++|.++...
T Consensus 428 ~~~~~g~~va~v~Y~~l~~~ 447 (501)
T 2jln_A 428 LMFVTGLIAALLLHIPAMRW 447 (501)
T ss_dssp GHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 35678888898898887654
No 9
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=3.29 E-value=3.7e+02 Score=21.73 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=17.5
Q ss_pred hhhhHhhhhhhhhcccCCCCCc
Q 039363 497 LRRMVAKEQNQVSAAAGVDPSI 518 (521)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~ 518 (521)
+.++...-|.++..+-|||+|-
T Consensus 18 l~~la~~gq~~vA~~iGV~~St 39 (97)
T 1xwr_A 18 LNKIAMLGTEKTAEAVGVDKSQ 39 (97)
T ss_dssp HHHHHHHCHHHHHHHHTCCTTT
T ss_pred HHHHHHHhHHHHHHHhCCCHHH
Confidence 4455667899999999999983
No 10
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=3.00 E-value=9.6e+02 Score=17.13 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=12.3
Q ss_pred HhhhhccccchhHHHHHHH
Q 039363 439 VVKDIDWGSIKHAVPAFVT 457 (521)
Q Consensus 439 ~i~~i~~~~~~~~~~a~vt 457 (521)
++|++.|-+++|.......
T Consensus 15 ElkKV~WPtr~e~~~~t~v 33 (60)
T 2zjs_E 15 ELARVTWPTREQVVEGTQA 33 (60)
T ss_dssp CCCCCCCSCSSSHHHHHHH
T ss_pred HHhhccCcCHHHHHHHHHH
Confidence 4677888777777544333
Done!