Query 039363
Match_columns 521
No_of_seqs 201 out of 1883
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 15:08:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039363.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039363hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 12.2 1.4E+02 0.0099 17.2 4.0 14 460-473 11-24 (32)
2 d2yvxa3 f.57.1.1 (A:276-448) M 7.1 2.7E+02 0.02 22.7 5.3 33 11-43 65-97 (173)
3 d1i26a_ g.3.6.3 (A:) PTU-1 {As 4.8 1.6E+02 0.011 17.1 1.5 12 66-77 10-21 (34)
4 d1eaka1 a.20.1.2 (A:32-107) Ge 3.4 3.5E+02 0.026 19.0 2.8 33 6-38 15-49 (76)
5 d2hjqa1 a.140.3.2 (A:50-103) H 3.2 1.6E+02 0.012 19.0 0.6 23 495-517 11-33 (54)
6 d2a65a1 f.54.1.1 (A:5-513) Na( 3.0 1.4E+03 0.11 20.5 8.4 61 309-375 228-288 (509)
7 d1xp8a2 d.48.1.1 (A:283-341) R 1.9 5.1E+02 0.037 17.1 2.0 35 337-371 3-37 (59)
8 d2r1jl1 a.35.1.2 (L:3-68) P22 1.9 2.1E+02 0.016 18.7 -0.1 24 494-517 8-31 (66)
9 d2phna1 d.340.1.1 (A:2-249) F4 1.7 3.7E+02 0.027 23.4 1.1 16 503-518 96-111 (248)
10 d1u94a2 d.48.1.1 (A:269-328) R 1.7 7E+02 0.051 16.4 2.4 36 337-372 4-39 (60)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.24 E-value=1.4e+02 Score=17.20 Aligned_cols=14 Identities=43% Similarity=0.638 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 039363 460 LMPLTYSIAYGIIG 473 (521)
Q Consensus 460 ~~~lt~~i~~GI~~ 473 (521)
++.++++++.|+..
T Consensus 11 fialffgiavgiif 24 (32)
T d2e74e1 11 FIALFFGIAVGIIF 24 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhee
Confidence 44455555555443
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=7.11 E-value=2.7e+02 Score=22.75 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=23.4
Q ss_pred hhhhhccccccccccchhhHHHHHHHHHHHHHH
Q 039363 11 KSFIGKHFKLEVRKSCFTKELRAGTATFLTMAY 43 (521)
Q Consensus 11 ~~~~~~~f~~~~~~~~~~~ei~aGl~~~lam~y 43 (521)
|..-.+..+.++.+.-++||+..|+...+.+..
T Consensus 65 R~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~ 97 (173)
T d2yvxa3 65 RALATRDLDLRDWRRVFLKEMGVGLLLGLTLSF 97 (173)
T ss_dssp HHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455666667889999999999887753
No 3
>d1i26a_ g.3.6.3 (A:) PTU-1 {Assassin bug (Peirates turpis) [TaxId: 181095]}
Probab=4.78 E-value=1.6e+02 Score=17.13 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCC
Q 039363 66 VPMNQTASPDCT 77 (521)
Q Consensus 66 ~~~~~~~~~~~~ 77 (521)
-||-+|++|-|+
T Consensus 10 apcfgtdkpccn 21 (34)
T d1i26a_ 10 APCFGTDKPCCN 21 (34)
T ss_dssp SCCTTTTCCBSS
T ss_pred CCccCCCCCCcC
Confidence 379999999987
No 4
>d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.37 E-value=3.5e+02 Score=19.05 Aligned_cols=33 Identities=6% Similarity=0.205 Sum_probs=22.2
Q ss_pred hHHHHhhhhhccccccccccch--hhHHHHHHHHH
Q 039363 6 NEAVSKSFIGKHFKLEVRKSCF--TKELRAGTATF 38 (521)
Q Consensus 6 ~~~~~~~~~~~~f~~~~~~~~~--~~ei~aGl~~~ 38 (521)
|+..++++++||+.+..++.+. .+|-+-=+|.|
T Consensus 15 d~e~A~~YL~~fgyl~~~~~~~~~l~~ai~~~Q~f 49 (76)
T d1eaka1 15 DKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKF 49 (76)
T ss_dssp HHHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCcCCCccHHHHHHHHHHHHH
Confidence 6778899999999987765443 23444445555
No 5
>d2hjqa1 a.140.3.2 (A:50-103) Hypothetical protein YqbF {Bacillus subtilis [TaxId: 1423]}
Probab=3.21 E-value=1.6e+02 Score=19.04 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=19.0
Q ss_pred hhhhhhHhhhhhhhhcccCCCCC
Q 039363 495 LKLRRMVAKEQNQVSAAAGVDPS 517 (521)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~ 517 (521)
..+++|-..||..+-..-|-|||
T Consensus 11 selk~m~k~~~e~ii~~lg~~ps 33 (54)
T d2hjqa1 11 SELKGMNKAEHESIISNLGRNPS 33 (54)
T ss_dssp HHHHTCCHHHHHHHHHHHTCCTT
T ss_pred HHHhhcccccchhHHHhcCCChh
Confidence 46788888889888888888887
No 6
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=3.02 E-value=1.4e+03 Score=20.53 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=29.9
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCcccCCceeeecchhhhhhhcc
Q 039363 309 VISFTNFNHSEVWVALATLLYVDVLATTGTLYTMAEIGGFVNEQGKFEGEYIAYMVDASSTIVGSAL 375 (521)
Q Consensus 309 ~~d~~~~~~~~~~~~~~~~~lv~~~etigt~~ala~~~g~~d~~~~~~~~~~~l~adGlanii~~lf 375 (521)
..|++++..++.|..+..-.+.+.-=..|.+.+.++.. .++.|..|+-+...+.|...++.
T Consensus 228 ~pd~~~L~~~~vW~~A~~Q~ffSlgiG~G~~i~~~Sy~------~~~~n~~rda~~v~~~~~~~si~ 288 (509)
T d2a65a1 228 TPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYV------RKDQDIVLSGLTAATLNEKAEVI 288 (509)
T ss_dssp SCCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTS------CTTSCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHhcChHHHHHHHHHHhhhhcccCCceeeehhhc------cchhhhcccceEEEecccceeec
Confidence 35666665556665554443333322335666776532 12344445444444555444444
No 7
>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=1.95 E-value=5.1e+02 Score=17.13 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=24.6
Q ss_pred HHHHHHHHhcccccCCCCcccCCceeeecchhhhh
Q 039363 337 GTLYTMAEIGGFVNEQGKFEGEYIAYMVDASSTIV 371 (521)
Q Consensus 337 gt~~ala~~~g~~d~~~~~~~~~~~l~adGlanii 371 (521)
|.+.-++...+.+++.|.-..-+.+-+|||=-|..
T Consensus 3 gellDlav~~~ii~KsGaWysy~~e~iGQGre~a~ 37 (59)
T d1xp8a2 3 SDLVGLAADMDIIKKAGSFYSYGDERIGQGKEKTI 37 (59)
T ss_dssp HHHHHHHHHTTSSEEETTEEESSSSEEEESHHHHH
T ss_pred hHHHHHHHHcCceecccceEEECCEehhhhHHHHH
Confidence 34444555667888888777777788888877654
No 8
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=1.94 E-value=2.1e+02 Score=18.75 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=13.9
Q ss_pred HhhhhhhHhhhhhhhhcccCCCCC
Q 039363 494 FLKLRRMVAKEQNQVSAAAGVDPS 517 (521)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~ 517 (521)
+.++++.-.--|.+++...|++++
T Consensus 8 ik~~R~~~g~tq~~lA~~~gvs~~ 31 (66)
T d2r1jl1 8 IRARRKKLKIRQAALGKMVGVSNV 31 (66)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHH
Confidence 344444444466777777777653
No 9
>d2phna1 d.340.1.1 (A:2-249) F420-0:gamma-glutamyl ligase CofE {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=1.73 E-value=3.7e+02 Score=23.35 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=12.3
Q ss_pred hhhhhhhcccCCCCCc
Q 039363 503 KEQNQVSAAAGVDPSI 518 (521)
Q Consensus 503 ~~~~~~~~~~~~~~~~ 518 (521)
..++.+.+.||+|.|-
T Consensus 96 ~~~G~v~anAGID~SN 111 (248)
T d2phna1 96 AKFGNVCVNAGIDASN 111 (248)
T ss_dssp ETTSCEEEGGGCBCSS
T ss_pred ecCceEeecccccccc
Confidence 4677788889999873
No 10
>d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=1.68 E-value=7e+02 Score=16.41 Aligned_cols=36 Identities=8% Similarity=0.112 Sum_probs=26.4
Q ss_pred HHHHHHHHhcccccCCCCcccCCceeeecchhhhhh
Q 039363 337 GTLYTMAEIGGFVNEQGKFEGEYIAYMVDASSTIVG 372 (521)
Q Consensus 337 gt~~ala~~~g~~d~~~~~~~~~~~l~adGlanii~ 372 (521)
|.+.-++...|.+++.|.-..-+.+-+|||=-|...
T Consensus 4 GellDlav~~~ii~KsGsWysy~~eklGQGre~~~~ 39 (60)
T d1u94a2 4 GELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATA 39 (60)
T ss_dssp HHHHHHHHHTTSEECCTTCEEETTEEEESSHHHHHH
T ss_pred chHHHHHHHcCccccccceEEeCCccccchHHHHHH
Confidence 344445666688888888778888888999777653
Done!