Query 039365
Match_columns 159
No_of_seqs 112 out of 685
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 15:09:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls3_A High affinity copper up 98.7 9.9E-12 3.4E-16 71.2 0.0 28 91-118 1-28 (29)
2 2ls4_A High affinity copper up 97.8 1.9E-08 6.6E-13 56.1 0.0 24 116-139 1-24 (26)
3 2ls2_A High affinity copper up 97.0 2.8E-06 9.6E-11 47.2 0.0 25 55-79 2-26 (26)
4 2ivd_A PPO, PPOX, protoporphyr 36.3 8.3 0.00029 32.1 0.3 15 3-17 1-15 (478)
5 2ls0_1 Zoocin A endopeptidase; 35.5 27 0.00092 25.6 2.9 20 3-22 3-22 (128)
6 2lxf_A Uncharacterized protein 34.3 52 0.0018 23.7 4.3 25 3-27 1-25 (121)
7 2jwa_A Receptor tyrosine-prote 33.1 30 0.001 20.9 2.3 20 119-138 20-39 (44)
8 2vv5_A MSCS, small-conductance 27.4 1.6E+02 0.0054 23.4 6.6 84 50-133 21-110 (286)
9 2i68_A Protein EMRE; transmemb 24.1 2E+02 0.0069 20.6 6.6 40 98-137 35-81 (137)
10 2lj8_A Cofilin/actin depolymer 21.8 24 0.00083 25.5 0.5 15 3-17 1-15 (144)
No 1
>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=98.68 E-value=9.9e-12 Score=71.22 Aligned_cols=28 Identities=25% Similarity=0.609 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039365 91 ALLIQACVYVVRMALAYMVMLSVMSFNL 118 (159)
Q Consensus 91 ~~l~~s~l~~v~~~lsYlLMLivMTfN~ 118 (159)
+|++|+++|++|+++||+|||++||||+
T Consensus 1 ~h~~ra~l~~~q~~~~Y~LML~~MtyN~ 28 (29)
T 2ls3_A 1 KHLLQTVLHIIQVVISYFLMLIFMTYNK 28 (29)
Confidence 4789999999999999999999999996
No 2
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=97.85 E-value=1.9e-08 Score=56.07 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHhhhhhcchh
Q 039365 116 FNLGVFIVAVAGHGAGFLLVKARA 139 (159)
Q Consensus 116 fN~~lflaVvlG~~iGy~iFg~~~ 139 (159)
||+|+++||++|+++||++|++.+
T Consensus 1 YNg~l~iavvlGa~~Gyf~F~~~~ 24 (26)
T 2ls4_A 1 YNGYLCIAVAAGAGTGYFLFSWKK 24 (26)
Confidence 899999999999999999998874
No 3
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=97.01 E-value=2.8e-06 Score=47.23 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=23.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHh
Q 039365 55 RSLGMYILALIFVFLLGFAVEVLSI 79 (159)
Q Consensus 55 ~s~~~y~lsci~vf~lav~~E~L~~ 79 (159)
+|.+++++||+++|+++++||++|.
T Consensus 2 ~s~~~~v~Sci~ifll~~~YE~Lk~ 26 (26)
T 2ls2_A 2 NTAGEMAGAFVAVFLLAMFYEGLKX 26 (26)
Confidence 5789999999999999999999983
No 4
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=36.34 E-value=8.3 Score=32.11 Aligned_cols=15 Identities=33% Similarity=0.498 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCC
Q 039365 3 YDHDHDGGMYMPPGS 17 (159)
Q Consensus 3 ~~~~~~~g~~~~~~~ 17 (159)
|||+|||++-||...
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (478)
T 2ivd_A 1 MDHHHHHHHHMPRTT 15 (478)
T ss_dssp ---------------
T ss_pred CCccccccccCCCCC
Confidence 799999999999886
No 5
>2ls0_1 Zoocin A endopeptidase; specificity, hydrolase; NMR {Streptococcus equi subsp}
Probab=35.55 E-value=27 Score=25.64 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=15.7
Q ss_pred ccCCCCCCCCCCCCCCCCCC
Q 039365 3 YDHDHDGGMYMPPGSSMPDG 22 (159)
Q Consensus 3 ~~~~~~~g~~~~~~~~~~~~ 22 (159)
=.|+|||+.++|+.|+++..
T Consensus 3 ~~~~~~~~~~~~~~~~t~~~ 22 (128)
T 2ls0_1 3 GSHHHHHHGSEPTTPTTNLK 22 (128)
T ss_dssp SCCCCCCCCSCCCCCSCCCC
T ss_pred ccccccccCCCCCCcccccc
Confidence 46888888899999877763
No 6
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=34.31 E-value=52 Score=23.65 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=16.3
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCC
Q 039365 3 YDHDHDGGMYMPPGSSMPDGSMNST 27 (159)
Q Consensus 3 ~~~~~~~g~~~~~~~~~~~~~~~~~ 27 (159)
|-|+|||+|.-+...++++..|.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~~g~ 25 (121)
T 2lxf_A 1 MAHHHHHHMGTLEAQTQGPGSMQGS 25 (121)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred CCcccccccCChhHhccCCCCCCCC
Confidence 4577777776666666666666554
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=33.09 E-value=30 Score=20.88 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhhhhcch
Q 039365 119 GVFIVAVAGHGAGFLLVKAR 138 (159)
Q Consensus 119 ~lflaVvlG~~iGy~iFg~~ 138 (159)
++++.+++|..++.++=.++
T Consensus 20 Gvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 20 GILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhheehhh
Confidence 46678888888777664443
No 8
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=27.41 E-value=1.6e+02 Score=23.45 Aligned_cols=84 Identities=14% Similarity=0.106 Sum_probs=37.5
Q ss_pred cCCccCChHHHHHHHHHHHHHHHHHHHHHhc-ccc---cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HH
Q 039365 50 SGWPERSLGMYILALIFVFLLGFAVEVLSIS-PQL---VGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVF--IV 123 (159)
Q Consensus 50 ~~W~~~s~~~y~lsci~vf~lav~~E~L~~~-R~~---~~~~~~~~~l~~s~l~~v~~~lsYlLMLivMTfN~~lf--la 123 (159)
..|-+......+.+++++++.-++.+.++.+ ++. ++..+...++++.++..+-..++.++.|...-.|..-+ .+
T Consensus 21 ~~~~~~~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~ 100 (286)
T 2vv5_A 21 QALLLSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVL 100 (286)
T ss_dssp ----CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3344444445555555544444444544422 211 22233344555555555555555555555555554433 33
Q ss_pred HHHHHHHhhh
Q 039365 124 AVAGHGAGFL 133 (159)
Q Consensus 124 VvlG~~iGy~ 133 (159)
-++|.++|+.
T Consensus 101 g~~g~aig~a 110 (286)
T 2vv5_A 101 GAAGLVVGLA 110 (286)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455555543
No 9
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=24.07 E-value=2e+02 Score=20.60 Aligned_cols=40 Identities=3% Similarity=-0.003 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHhhhhhcc
Q 039365 98 VYVVRMALAYMVMLSVM-------SFNLGVFIVAVAGHGAGFLLVKA 137 (159)
Q Consensus 98 l~~v~~~lsYlLMLivM-------TfN~~lflaVvlG~~iGy~iFg~ 137 (159)
+-.+-..++|++...++ .|..|..+..++...+|.++|+.
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE 81 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ 81 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33334444444444444 33444445555555555555544
No 10
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei}
Probab=21.80 E-value=24 Score=25.53 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=4.9
Q ss_pred ccCCCCCCCCCCCCC
Q 039365 3 YDHDHDGGMYMPPGS 17 (159)
Q Consensus 3 ~~~~~~~g~~~~~~~ 17 (159)
|-|+|+|||++|-.+
T Consensus 1 ~~~~~~~~Ma~SGi~ 15 (144)
T 2lj8_A 1 MGHHHHHHMAMSGVS 15 (144)
T ss_dssp --------CCCSSCE
T ss_pred CCCcccCccccCCce
Confidence 457788888887664
Done!