Query 039365
Match_columns 159
No_of_seqs 112 out of 685
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 15:10:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039365.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039365hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 22.5 46 0.0033 17.8 3.1 20 56-75 13-32 (37)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 16.9 29 0.0021 17.6 1.4 13 61-73 9-22 (30)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 15.7 1.2E+02 0.0086 22.3 5.4 45 95-139 5-49 (248)
4 d1v54d_ f.23.1.1 (D:) Mitochon 13.3 53 0.0039 22.7 2.5 8 151-158 127-134 (144)
5 d2axti1 f.23.37.1 (I:1-35) Pho 12.0 88 0.0064 16.4 2.5 19 121-139 7-25 (35)
6 d2vv5a3 f.34.1.1 (A:27-112) Me 9.8 1.8E+02 0.013 17.0 6.9 46 87-132 36-83 (86)
7 d1a6qa1 a.159.1.1 (A:297-368) 8.7 47 0.0034 20.3 0.7 14 145-158 44-58 (72)
8 d2e74e1 f.23.24.1 (E:1-32) Pet 8.2 1.1E+02 0.0078 15.4 1.9 13 120-132 10-22 (32)
9 d2axth1 f.23.33.1 (H:2-65) Pho 7.1 1.3E+02 0.0096 17.8 2.3 26 49-75 21-46 (64)
10 d1m56c_ f.25.1.1 (C:) Bacteria 7.1 3.9E+02 0.029 18.9 7.6 26 90-116 199-224 (265)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.49 E-value=46 Score=17.78 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 039365 56 SLGMYILALIFVFLLGFAVE 75 (159)
Q Consensus 56 s~~~y~lsci~vf~lav~~E 75 (159)
+....++.++.+|++|++..
T Consensus 13 NrtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 13 NRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHH
Confidence 44566777888899998864
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.87 E-value=29 Score=17.58 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=6.3
Q ss_pred HHHH-HHHHHHHHH
Q 039365 61 ILAL-IFVFLLGFA 73 (159)
Q Consensus 61 ~lsc-i~vf~lav~ 73 (159)
+.+| +++|++|++
T Consensus 9 ifac~i~lfffaif 22 (30)
T d2axtt1 9 IFACIIALFFFAIF 22 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 3344 345555554
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=15.68 E-value=1.2e+02 Score=22.34 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhcchh
Q 039365 95 QACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVKARA 139 (159)
Q Consensus 95 ~s~l~~v~~~lsYlLMLivMTfN~~lflaVvlG~~iGy~iFg~~~ 139 (159)
..++-.+..+..|.+.++..-=+.++.+.+++-..++.++|.+++
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vy~s~r 49 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRK 49 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHheEEEEEccC
Confidence 467778888888888888777777776666666667777776544
No 4
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.30 E-value=53 Score=22.69 Aligned_cols=8 Identities=50% Similarity=0.821 Sum_probs=4.8
Q ss_pred CCCCCCCC
Q 039365 151 PSAGISSK 158 (159)
Q Consensus 151 ~~~~~~~~ 158 (159)
|-.|+||+
T Consensus 127 PitG~SSk 134 (144)
T d1v54d_ 127 PIQGFSAK 134 (144)
T ss_dssp TTTTSGGG
T ss_pred CCCCcccc
Confidence 33477775
No 5
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.02 E-value=88 Score=16.44 Aligned_cols=19 Identities=5% Similarity=-0.117 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhhhhcchh
Q 039365 121 FIVAVAGHGAGFLLVKARA 139 (159)
Q Consensus 121 flaVvlG~~iGy~iFg~~~ 139 (159)
++-+++-..++-|+||-.+
T Consensus 7 ~Vy~vV~fFv~lFiFGFLS 25 (35)
T d2axti1 7 TVYIVVTFFVLLFVFGFLS 25 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred ehhhHHHHHHHHHHHhhcc
Confidence 3444555667778887765
No 6
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=9.83 E-value=1.8e+02 Score=17.00 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=29.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHhh
Q 039365 87 SSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVA--VAGHGAGF 132 (159)
Q Consensus 87 ~~~~~~l~~s~l~~v~~~lsYlLMLivMTfN~~lflaV--vlG~~iGy 132 (159)
++...+++..+.+.+-..++.+..|-..-.|..-+++. ++|.++|+
T Consensus 36 ~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gvaiGf 83 (86)
T d2vv5a3 36 DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGL 83 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 34556666667776767777777777788887644443 45555554
No 7
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.69 E-value=47 Score=20.34 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=9.3
Q ss_pred ccCCCCCCCC-CCCC
Q 039365 145 RADSAVPSAG-ISSK 158 (159)
Q Consensus 145 ~~~~~~~~~~-~~~~ 158 (159)
++--++||+| +.||
T Consensus 44 e~Ip~LPPGGGL~sK 58 (72)
T d1a6qa1 44 ENIPSLPPGGELASK 58 (72)
T ss_dssp TTCSSCCTTTGGGGG
T ss_pred cCCCCCCCCccHHHH
Confidence 4556788877 6665
No 8
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.17 E-value=1.1e+02 Score=15.44 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhh
Q 039365 120 VFIVAVAGHGAGF 132 (159)
Q Consensus 120 lflaVvlG~~iGy 132 (159)
+|+|...|.++|-
T Consensus 10 vfialffgiavgi 22 (32)
T d2e74e1 10 VFIALFFGIAVGI 22 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 4566666666664
No 9
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.14 E-value=1.3e+02 Score=17.80 Aligned_cols=26 Identities=35% Similarity=0.659 Sum_probs=16.2
Q ss_pred ecCCccCChHHHHHHHHHHHHHHHHHH
Q 039365 49 FSGWPERSLGMYILALIFVFLLGFAVE 75 (159)
Q Consensus 49 F~~W~~~s~~~y~lsci~vf~lav~~E 75 (159)
-++|-++-.-+.+.+++++|++ ++.|
T Consensus 21 aPGWGTTplMgv~m~Lf~vfl~-iiLe 46 (64)
T d2axth1 21 APGWGTTPLMAVFMGLFLVFLL-IILE 46 (64)
T ss_dssp CSTTTTHHHHHHHHHHHHHHHH-HHHH
T ss_pred cCCcCccHHHHHHHHHHHHHHH-HHHH
Confidence 3678777666777777666544 4444
No 10
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.10 E-value=3.9e+02 Score=18.92 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039365 90 AALLIQACVYVVRMALAYMVMLSVMSF 116 (159)
Q Consensus 90 ~~~l~~s~l~~v~~~lsYlLMLivMTf 116 (159)
..=...+.+|++++.++- +.|+++.+
T Consensus 199 s~ff~lTG~Hg~HV~~G~-i~l~~~~~ 224 (265)
T d1m56c_ 199 ANFFMATGFHGFHVIVGT-IFLLVCLI 224 (265)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 455777899999999995 44444444
Done!