BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039366
(547 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 561 bits (1445), Expect = e-160, Method: Compositional matrix adjust.
Identities = 282/565 (49%), Positives = 386/565 (68%), Gaps = 29/565 (5%)
Query: 1 MSLQVSASPTKIIQRNAEKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEE 60
M+ QVS P+ ++ KD R A+F PSIWGD FL+ +++ + +HQ+LKEE
Sbjct: 1 MASQVSQMPSSS-PLSSNKDEMRPKADFQPSIWGDLFLNCPDKNIDAE-TEKRHQQLKEE 58
Query: 61 IRRMLKINKPSQNN---LDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDE 117
+R+M I P N+ L ID++QRLGVSYHF EI++ L ++ + D END
Sbjct: 59 VRKM--IVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDA-----END- 110
Query: 118 LYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENI 177
LY S++FRLLR+HGY +S DVF +FKD GNFK+S+ DVRG+L L++A++L VH E+I
Sbjct: 111 LYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDI 170
Query: 178 LDEALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNE 237
LDEA++FTT L S+A + PL+E+V HAL Q I RGL R+EARHY+ +YQ+ SHN+
Sbjct: 171 LDEAISFTTHHL-SLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNK 229
Query: 238 ALLTFAKLDFNKLQKLHQKELGDI---------------SRDRIAECYFWILGVYFEPQY 282
ALL FAK+DFN LQ LH+KEL +I +RDR+ E YFWI GVYFEPQY
Sbjct: 230 ALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQY 289
Query: 283 SFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALL 342
S R++LTKVI+M S +DD YD Y EEL +T+AI+RWDI ID++PEYMK Y+ALL
Sbjct: 290 SLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALL 349
Query: 343 DVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSA 402
DVY E + +A G+ YR+ YAK AM + ++Y EAKW QNY P+ +E+ AL T
Sbjct: 350 DVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCG 409
Query: 403 YPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSV 462
Y ML+ TSFVGMGDIVT E+F+W S+P+ I+AS+++CR MDD+A H+F+ R S++
Sbjct: 410 YAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAI 469
Query: 463 ECYMKQHGATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKY 522
ECYM+++G T +EA + F K V +AWKD+N++ L+PT +P +L R LNL RV+DV+Y+
Sbjct: 470 ECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYRE 529
Query: 523 EDGYTHSAVVLKDFVASLLINPVPI 547
DGYT+ K + SLLI P+ +
Sbjct: 530 GDGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 500 bits (1287), Expect = e-142, Method: Compositional matrix adjust.
Identities = 255/550 (46%), Positives = 373/550 (67%), Gaps = 27/550 (4%)
Query: 16 NAEKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRML-KINKPSQNN 74
N E++ R A+F PS+WGD+FLS++ D+ + + + + LKE+ R ML + +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADT 67
Query: 75 LDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYK 134
L+LID I+RLG+SYHFE EIDEIL ++++ + +C ++L +LQFRLLRQHG+
Sbjct: 68 LNLIDIIERLGISYHFEKEIDEILDQIYNQNSNC-------NDLCTSALQFRLLRQHGFN 120
Query: 135 ISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAA 194
IS ++F +F+D +G FK SLA DV G+L+L+EA+H+ H ++IL++ALAF+T LES A
Sbjct: 121 ISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP 180
Query: 195 HQISSPLAEQVKHALIQPIHRGLQRLEARHYIP-IYQEQSSHNEALLTFAKLDFNKLQKL 253
H + SPL EQV HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ L
Sbjct: 181 H-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQML 239
Query: 254 HQKELGDISR---------------DRIAECYFWILGVYFEPQYSFARRILTKVISMTST 298
H++EL +SR DR+ ECYFW LGVYFEPQYS AR +L K ISM S
Sbjct: 240 HKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISI 299
Query: 299 IDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKL 358
+DD +D YG ++ELE +T AI+RWDI+ ID+LP+YMK+ Y+A+LD+Y + EK+L+ G+
Sbjct: 300 VDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRS 359
Query: 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIV 418
+ + +A + MK +V+NY E+ W + Y P + EY++ AL T+ Y L+TTS++GM
Sbjct: 360 HIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-A 418
Query: 419 TKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACN 478
T++ FEWL NP+ + AS ++CR++DD A++E E+SRG +A+ +EC M+ +G + +EA
Sbjct: 419 TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 479 EFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYE-DGYTHSAVVLKDFV 537
+F+ AWKDINE LRPT + L ILNL R+++V Y + DGYTH VLK +
Sbjct: 479 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHI 538
Query: 538 ASLLINPVPI 547
+LL++ + I
Sbjct: 539 INLLVDSIKI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 500 bits (1287), Expect = e-142, Method: Compositional matrix adjust.
Identities = 255/550 (46%), Positives = 373/550 (67%), Gaps = 27/550 (4%)
Query: 16 NAEKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRML-KINKPSQNN 74
N E++ R A+F PS+WGD+FLS++ D+ + + + + LKE+ R ML + +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADT 67
Query: 75 LDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYK 134
L+LID I+RLG+SYHFE EIDEIL ++++ + +C ++L +LQFRLLRQHG+
Sbjct: 68 LNLIDIIERLGISYHFEKEIDEILDQIYNQNSNC-------NDLCTSALQFRLLRQHGFN 120
Query: 135 ISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAA 194
IS ++F +F+D +G FK SLA DV G+L+L+EA+H+ H ++IL++ALAF+T LES A
Sbjct: 121 ISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP 180
Query: 195 HQISSPLAEQVKHALIQPIHRGLQRLEARHYIP-IYQEQSSHNEALLTFAKLDFNKLQKL 253
H + SPL EQV HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ L
Sbjct: 181 H-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQML 239
Query: 254 HQKELGDISR---------------DRIAECYFWILGVYFEPQYSFARRILTKVISMTST 298
H++EL +SR DR+ ECYFW LGVYFEPQYS AR +L K ISM S
Sbjct: 240 HKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISI 299
Query: 299 IDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKL 358
+DD +D YG ++ELE +T AI+RWDI+ ID+LP+YMK+ Y+A+LD+Y + EK+L+ G+
Sbjct: 300 VDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRS 359
Query: 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIV 418
+ + +A + MK +V+NY E+ W + Y P + EY++ AL T+ Y L+TTS++GM
Sbjct: 360 HIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-A 418
Query: 419 TKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACN 478
T++ FEWL NP+ + AS ++CR++DD A++E E+SRG +A+ +EC M+ +G + +EA
Sbjct: 419 TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 479 EFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYE-DGYTHSAVVLKDFV 537
+F+ AWKDINE LRPT + L ILNL R+++V Y + DGYTH VLK +
Sbjct: 479 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHI 538
Query: 538 ASLLINPVPI 547
+LL++ + I
Sbjct: 539 INLLVDSIKI 548
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 498 bits (1282), Expect = e-141, Method: Compositional matrix adjust.
Identities = 254/550 (46%), Positives = 372/550 (67%), Gaps = 27/550 (4%)
Query: 16 NAEKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRML-KINKPSQNN 74
N E++ R A+F PS+WGD+FLS++ D+ + + + + LKE+ R ML +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADT 67
Query: 75 LDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYK 134
L+LID I+RLG+SYHFE EID+IL ++++ + +C ++L +LQFRLLRQHG+
Sbjct: 68 LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC-------NDLCTSALQFRLLRQHGFN 120
Query: 135 ISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAA 194
IS ++F +F+D +G FK SLA DV G+L+L+EA+H+ H ++IL++ALAF+T LES A
Sbjct: 121 ISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP 180
Query: 195 HQISSPLAEQVKHALIQPIHRGLQRLEARHYIP-IYQEQSSHNEALLTFAKLDFNKLQKL 253
H + SPL EQV HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ L
Sbjct: 181 H-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQML 239
Query: 254 HQKELGDISR---------------DRIAECYFWILGVYFEPQYSFARRILTKVISMTST 298
H++EL +SR DR+ ECYFW LGVYFEPQYS AR +L K ISM S
Sbjct: 240 HKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISI 299
Query: 299 IDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKL 358
+DD +D YG ++ELE +T AI+RWDI+ ID+LP+YMK+ Y+A+LD+Y + EK+L+ G+
Sbjct: 300 VDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRS 359
Query: 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIV 418
+ + +A + MK +V+NY E+ W + Y P + EY++ AL T+ Y L+TTS++GM
Sbjct: 360 HIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-A 418
Query: 419 TKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACN 478
T++ FEWL NP+ + AS ++CR++DD A++E E+SRG +A+ +EC M+ +G + +EA
Sbjct: 419 TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 479 EFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYE-DGYTHSAVVLKDFV 537
+F+ AWKDINE LRPT + L ILNL R+++V Y + DGYTH VLK +
Sbjct: 479 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHI 538
Query: 538 ASLLINPVPI 547
+LL++ + I
Sbjct: 539 INLLVDSIKI 548
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 496 bits (1278), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/550 (46%), Positives = 372/550 (67%), Gaps = 27/550 (4%)
Query: 16 NAEKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRML-KINKPSQNN 74
N E++ R A+F PS+WGD+FLS++ + + + + + LKE+ R ML +
Sbjct: 10 NYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADT 69
Query: 75 LDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYK 134
L+LID I+RLG+SYHFE EID+IL ++++ + +C ++L +LQFRLLRQHG+
Sbjct: 70 LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC-------NDLCTSALQFRLLRQHGFN 122
Query: 135 ISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAA 194
IS ++F +F+D +G FK SLA DV G+L+L+EA+H+ H ++IL++ALAF+T LES A
Sbjct: 123 ISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP 182
Query: 195 HQISSPLAEQVKHALIQPIHRGLQRLEARHYIP-IYQEQSSHNEALLTFAKLDFNKLQKL 253
H + SPL EQV HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ L
Sbjct: 183 H-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQML 241
Query: 254 HQKELGDISR---------------DRIAECYFWILGVYFEPQYSFARRILTKVISMTST 298
H++EL +SR DR+ ECYFW LGVYFEPQYS AR +L K ISM S
Sbjct: 242 HKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISI 301
Query: 299 IDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKL 358
+DD +D YG ++ELE +T AI+RWDI+ ID+LP+YMK+ Y+A+LD+Y + EK+L+ G+
Sbjct: 302 VDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRS 361
Query: 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIV 418
+ + +A + MK IV+NY E+ W + Y P + EY++ AL T+ Y +L+TTS++GM
Sbjct: 362 HIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGMKS-A 420
Query: 419 TKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACN 478
T++ FEWL NP+ + AS ++CR++DD A++E E+SRG +A+ +EC M+ +G + +EA
Sbjct: 421 TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 480
Query: 479 EFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYE-DGYTHSAVVLKDFV 537
+F+ AWKDINE LRPT + L ILNL R+I+V Y + DGYTH VLK +
Sbjct: 481 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHI 540
Query: 538 ASLLINPVPI 547
+LL++ + I
Sbjct: 541 INLLVDSIKI 550
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 495 bits (1275), Expect = e-140, Method: Compositional matrix adjust.
Identities = 253/550 (46%), Positives = 371/550 (67%), Gaps = 27/550 (4%)
Query: 16 NAEKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRML-KINKPSQNN 74
N E++ R A+F PS+WGD+FLS++ + + + + + LKE+ R ML +
Sbjct: 10 NYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADT 69
Query: 75 LDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYK 134
L+LID I+RLG+SYHFE EID+IL ++++ + +C ++L +LQFRLLRQHG+
Sbjct: 70 LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC-------NDLCTSALQFRLLRQHGFN 122
Query: 135 ISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAA 194
IS ++F +F+D +G FK SLA DV G+L+L+EA+H+ H ++IL++ALAF+T LES A
Sbjct: 123 ISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP 182
Query: 195 HQISSPLAEQVKHALIQPIHRGLQRLEARHYIP-IYQEQSSHNEALLTFAKLDFNKLQKL 253
H + SPL EQV HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ L
Sbjct: 183 H-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQML 241
Query: 254 HQKELGDISR---------------DRIAECYFWILGVYFEPQYSFARRILTKVISMTST 298
H++EL +SR DR+ ECYFW LGVYFEPQYS AR +L K ISM S
Sbjct: 242 HKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISI 301
Query: 299 IDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKL 358
+DD +D YG ++ELE +T AI+RWDI+ ID+LP+YMK+ Y+A+LD+Y + EK+L+ G+
Sbjct: 302 VDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRS 361
Query: 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIV 418
+ + +A + MK +V+NY E+ W + Y P + EY++ AL T+ Y L+TTS++GM
Sbjct: 362 HIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-A 420
Query: 419 TKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACN 478
T++ FEWL NP+ + AS ++CR++DD A++E E+SRG +A+ +EC M+ +G + +EA
Sbjct: 421 TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 480
Query: 479 EFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYE-DGYTHSAVVLKDFV 537
+F+ AWKDINE LRPT + L ILNL R+++V Y + DGYTH VLK +
Sbjct: 481 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHI 540
Query: 538 ASLLINPVPI 547
+LL++ + I
Sbjct: 541 INLLVDSIKI 550
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 493 bits (1270), Expect = e-140, Method: Compositional matrix adjust.
Identities = 253/550 (46%), Positives = 371/550 (67%), Gaps = 27/550 (4%)
Query: 16 NAEKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRML-KINKPSQNN 74
N E++ R A+F PS+WGD+FLS++ D+ + + + + LKE+ R ML +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADT 67
Query: 75 LDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYK 134
L+LID I+RLG+SYHFE EID+IL ++++ + +C ++L +LQFRLLRQHG+
Sbjct: 68 LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC-------NDLCTSALQFRLLRQHGFN 120
Query: 135 ISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAA 194
IS ++F +F+D +G FK SLA DV G+L+L+EA+H+ H ++IL++ALAF+T LES A
Sbjct: 121 ISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP 180
Query: 195 HQISSPLAEQVKHALIQPIHRGLQRLEARHYIP-IYQEQSSHNEALLTFAKLDFNKLQKL 253
H + SPL EQV HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ L
Sbjct: 181 H-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQML 239
Query: 254 HQKELGDISR---------------DRIAECYFWILGVYFEPQYSFARRILTKVISMTST 298
H++EL +SR DR+ ECYFW LGVYFEPQYS AR +L K ISM S
Sbjct: 240 HKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISI 299
Query: 299 IDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKL 358
+DD +D YG ++ELE +T AI+RWDI+ ID+LP+YMK+ Y+A+LD+Y + EK+L+ G+
Sbjct: 300 VDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRS 359
Query: 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIV 418
+ + +A + MK +V+NY E+ W + Y P + EY++ AL T+ Y L+TTS++GM
Sbjct: 360 HIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-A 418
Query: 419 TKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACN 478
T++ FEWL NP+ + AS ++ R++DD A++E E+SRG +A+ +EC M+ +G + +EA
Sbjct: 419 TEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 479 EFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYE-DGYTHSAVVLKDFV 537
+F+ AWKDINE LRPT + L ILNL R+++V Y + DGYTH VLK +
Sbjct: 479 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHI 538
Query: 538 ASLLINPVPI 547
+LL++ + I
Sbjct: 539 INLLVDSIKI 548
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 493 bits (1268), Expect = e-139, Method: Compositional matrix adjust.
Identities = 253/550 (46%), Positives = 371/550 (67%), Gaps = 27/550 (4%)
Query: 16 NAEKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRML-KINKPSQNN 74
N E++ R A+F PS+WGD+FLS++ D+ + + + + LKE+ R ML +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADT 67
Query: 75 LDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYK 134
L+LID I+RLG+SYHFE EID+IL ++++ + +C ++L +LQFRLLRQHG+
Sbjct: 68 LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC-------NDLCTSALQFRLLRQHGFN 120
Query: 135 ISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAA 194
IS ++F +F+D +G FK SLA DV G+L+L+EA+H+ H ++IL++ALAF+T LES A
Sbjct: 121 ISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP 180
Query: 195 HQISSPLAEQVKHALIQPIHRGLQRLEARHYIP-IYQEQSSHNEALLTFAKLDFNKLQKL 253
H + SPL EQV HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ L
Sbjct: 181 H-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQML 239
Query: 254 HQKELGDISR---------------DRIAECYFWILGVYFEPQYSFARRILTKVISMTST 298
H++EL +SR DR+ ECYF LGVYFEPQYS AR +L K ISM S
Sbjct: 240 HKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISI 299
Query: 299 IDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKL 358
+DD +D YG ++ELE +T AI+RWDI+ ID+LP+YMK+ Y+A+LD+Y + EK+L+ G+
Sbjct: 300 VDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRS 359
Query: 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIV 418
+ + +A + MK +V+NY E+ W + Y P + EY++ AL T+ Y L+TTS++GM
Sbjct: 360 HIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-A 418
Query: 419 TKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACN 478
T++ FEWL NP+ + AS ++CR++DD A++E E+SRG +A+ +EC M+ +G + +EA
Sbjct: 419 TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 479 EFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYE-DGYTHSAVVLKDFV 537
+F+ AWKDINE LRPT + L ILNL R+++V Y + DGYTH VLK +
Sbjct: 479 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHI 538
Query: 538 ASLLINPVPI 547
+LL++ + I
Sbjct: 539 INLLVDSIKI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 251/544 (46%), Positives = 367/544 (67%), Gaps = 27/544 (4%)
Query: 22 TRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRML-KINKPSQNNLDLIDA 80
R A+F PS+WGD+FLS++ + + + + + LKE+ R ML + L+LID
Sbjct: 1 VRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDT 60
Query: 81 IQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVF 140
I+RLG+SYHFE EID+IL ++++ + +C ++L +LQFRLLRQHG+ IS ++F
Sbjct: 61 IERLGISYHFEKEIDDILDQIYNQNSNC-------NDLCTSALQFRLLRQHGFNISPEIF 113
Query: 141 KRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAHQISSP 200
+F+D +G FK SLA DV G+L+L+EA+H+ H ++IL++ALAF+T LES A H + SP
Sbjct: 114 SKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPH-LKSP 172
Query: 201 LAEQVKHALIQPIHRGLQRLEARHYIP-IYQEQSSHNEALLTFAKLDFNKLQKLHQKELG 259
L EQV HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ LH++EL
Sbjct: 173 LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELA 232
Query: 260 DISR---------------DRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYD 304
+SR DR+ ECYFW LGVYFEPQYS AR +L K ISM S +DD +D
Sbjct: 233 QVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFD 292
Query: 305 VYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYA 364
YG ++ELE +T AI+RWDI+ ID+LP+YMK+ Y+A+LD+Y + EK+L+ G+ + + +A
Sbjct: 293 AYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHA 352
Query: 365 KKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFE 424
+ MK +V+NY E+ W + Y P + EY++ AL T+ Y L+TTS++GM T++ FE
Sbjct: 353 IERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFE 411
Query: 425 WLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFRKQV 484
WL NP+ + AS ++CR++DD A++E E+SRG +A+ +EC M+ +G + +EA +F+
Sbjct: 412 WLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMA 471
Query: 485 SNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYE-DGYTHSAVVLKDFVASLLIN 543
AWKDINE LRPT + L ILNL R+++V Y + DGYTH VLK + +LL++
Sbjct: 472 ETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVD 531
Query: 544 PVPI 547
+ I
Sbjct: 532 SIKI 535
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 488 bits (1256), Expect = e-138, Method: Compositional matrix adjust.
Identities = 252/550 (45%), Positives = 370/550 (67%), Gaps = 27/550 (4%)
Query: 16 NAEKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRML-KINKPSQNN 74
N E++ R A+F PS+WGD+FLS++ D+ + + + + LKE+ R ML +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADT 67
Query: 75 LDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYK 134
L+LID I+RLG+SYHFE EID+IL ++++ + +C ++L +LQFRLLRQHG+
Sbjct: 68 LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC-------NDLCTSALQFRLLRQHGFN 120
Query: 135 ISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAA 194
IS ++F +F+D +G FK SLA DV G+L+L+EA+H+ H ++IL++ALAF+T LES A
Sbjct: 121 ISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP 180
Query: 195 HQISSPLAEQVKHALIQPIHRGLQRLEARHYIP-IYQEQSSHNEALLTFAKLDFNKLQKL 253
H + SPL EQV HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ L
Sbjct: 181 H-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQML 239
Query: 254 HQKELGDISR---------------DRIAECYFWILGVYFEPQYSFARRILTKVISMTST 298
H++EL +SR DR+ ECYF LGVYFEPQYS AR +L K ISM S
Sbjct: 240 HKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISI 299
Query: 299 IDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKL 358
+DD +D YG ++ELE +T AI+RWDI+ ID+LP+YMK+ Y+A+LD+Y + EK+L+ G+
Sbjct: 300 VDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRS 359
Query: 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIV 418
+ + +A + MK +V+NY E+ W + Y P + EY++ AL T+ Y L+TTS++GM
Sbjct: 360 HIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-A 418
Query: 419 TKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACN 478
T++ FEWL NP+ + AS ++ R++DD A++E E+SRG +A+ +EC M+ +G + +EA
Sbjct: 419 TEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 479 EFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYE-DGYTHSAVVLKDFV 537
+F+ AWKDINE LRPT + L ILNL R+++V Y + DGYTH VLK +
Sbjct: 479 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHI 538
Query: 538 ASLLINPVPI 547
+LL++ + I
Sbjct: 539 INLLVDSIKI 548
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 347 bits (889), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 204/545 (37%), Positives = 304/545 (55%), Gaps = 29/545 (5%)
Query: 22 TRRSANFHPSIWGDRFL--SYTSDSME--KDDGSAKHQELKEEIRRMLKINKPS-QNNLD 76
RRSA++ P+ W FL S T +S+E KD K ++L+ E+RR + K L+
Sbjct: 14 ARRSADYEPNSWDYDFLLSSDTDESIEVYKD----KAKKLEAEVRREINNEKAEFLTLLE 69
Query: 77 LIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKIS 136
LID +QRLG+ Y FES+I L + + G L+ +L FRLLRQHG+++S
Sbjct: 70 LIDNVQRLGLGYRFESDIRRALDRFVSS---GGFDGVTKTSLHATALSFRLLRQHGFEVS 126
Query: 137 ADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAHQ 196
+ F FKD +GNF +L +D + +LSL+EA+ L + ENILDEA F S L+ ++ +
Sbjct: 127 QEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEK 186
Query: 197 ISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQK 256
I LAEQV HAL P+HR QRLEA I Y+++ N+ LL A LD+N +Q ++Q+
Sbjct: 187 IGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQR 246
Query: 257 ELGDIS---------------RDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDD 301
+L + S RDR+ E ++W +GV FEPQYS R + K+ S + IDD
Sbjct: 247 DLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDD 306
Query: 302 IYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSE-AEKDLAPQGKLYR 360
IYDVYG ++ELELFT A++RWD++AI+ LP+YMKLC+ AL + +E A +L +G+
Sbjct: 307 IYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENI- 365
Query: 361 LHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTK 420
L Y KA ++ + EAKW + PT D+Y A +S+ P+ ++ + + K
Sbjct: 366 LPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKK 425
Query: 421 ESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEF 480
E E L I S + RL +D+AS E +RG A+SV CYM+ G +EE A
Sbjct: 426 EEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESV 485
Query: 481 RKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASL 540
+ WK +N++ L ++ P + +NL R Y D +T + + V S+
Sbjct: 486 MNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSV 545
Query: 541 LINPV 545
+ P+
Sbjct: 546 ITEPI 550
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 340 bits (872), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 191/548 (34%), Positives = 301/548 (54%), Gaps = 22/548 (4%)
Query: 18 EKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKINKPSQNNLDL 77
E RRS N+ P++W ++ + ++ + EL ++R +LK L+L
Sbjct: 1 EAHQIRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLEL 60
Query: 78 IDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISA 137
I ++ LG+S F+ EI EILG +++ H+ + E +LY+ +L FRLLRQHG+ IS
Sbjct: 61 IHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQ 120
Query: 138 DVFKRFKDSDG-NFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESI---A 193
DVF FK+ G +FK SLA+D +GML L+EA+ L E+ L+ A F T L+
Sbjct: 121 DVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEG 180
Query: 194 AHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKL 253
++I L ++H+L P+H +Q +EAR +I Y + N + AKL+FN +Q
Sbjct: 181 GNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQAT 240
Query: 254 HQKELGDISR---------------DRIAECYFWILGVYFEP-QYSFARRILTKVISMTS 297
HQ+EL D+SR DR+ E +FW +G+ FEP Q+ + R++ +I + +
Sbjct: 241 HQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGM-FEPHQHGYQRKMAATIIVLAT 299
Query: 298 TIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGK 357
IDDIYDVYG ++ELELFT KRWD +I +LP YM+LCY + + S+A D+ +
Sbjct: 300 VIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHG 359
Query: 358 LYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYP-MLSTTSFVGMGD 416
+ L Y +K++ ++V+ YF EAKW H Y P++DEY+ +A ++ A P ++S T F
Sbjct: 360 FFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANA 419
Query: 417 IVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEA 476
+ L+ + + ++ RL DD+ + FE +RG V +++CYMK+ A+EEEA
Sbjct: 420 SHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEA 479
Query: 477 CNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDF 536
+ + AWKD+N P ++ N+ RV IY + DG+ +
Sbjct: 480 VEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEH 539
Query: 537 VASLLINP 544
+A LL P
Sbjct: 540 IAGLLFEP 547
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 303 bits (776), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 176/540 (32%), Positives = 290/540 (53%), Gaps = 18/540 (3%)
Query: 23 RRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKINKPSQNNLDLIDAIQ 82
RRS N++PS W F+ ++D + EL ++ L+ L+LID +Q
Sbjct: 2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKETDQIRQLELIDDLQ 61
Query: 83 RLGVSYHFESEIDEILGKLH-DAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFK 141
R+G+S HF++E EIL ++ D H E +LY SL FRLLR+HG++++ +VF
Sbjct: 62 RMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFD 121
Query: 142 RFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLE-SIAAHQISSP 200
FK+ +G FK SL+ D RG+L L+EA+ L E L+ A F T LE + +
Sbjct: 122 SFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGD 181
Query: 201 LAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGD 260
L ++ ++L P+H ++R A +I Y+++ N +L A LD N +Q Q+EL +
Sbjct: 182 LLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKE 241
Query: 261 ---------------ISRDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDV 305
+RDR+ ECYFW G+ Q++ AR ++ KV ++ + IDDIYDV
Sbjct: 242 SFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDV 301
Query: 306 YGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAK 365
YG +EELE FT I+RWDI++IDQLP+YM+LC+ AL + + D+ + + + Y +
Sbjct: 302 YGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLR 361
Query: 366 KAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEW 425
++ ++ Y EA+W + + P+++EY+ + + + P + T F + D TKE+ +
Sbjct: 362 QSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDS 421
Query: 426 LFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFRKQVS 485
L+ +R SS V RL DD+ + E SRG V S++CYM + A+E EA + ++
Sbjct: 422 LYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIA 481
Query: 486 NAWKDIN-EDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINP 544
WK +N E + + + ++L R+ ++Y DG+ ++ + L P
Sbjct: 482 EVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEP 541
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 300 bits (767), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 183/538 (34%), Positives = 287/538 (53%), Gaps = 33/538 (6%)
Query: 24 RSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKINKPSQNNLDLIDAIQR 83
R+ + P++W + +++ + + ++++ ML+ S L+LID ++R
Sbjct: 36 RTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRR 95
Query: 84 LGVSYHFESEIDEILGKLHDAHQDCGLGDNENDE--LYYISLQFRLLRQHGYKISADVFK 141
LG+S HFE EI EIL + +NE DE LY +L+FRLLRQ+ + +S +VF
Sbjct: 96 LGISCHFEREIVEILNSKY-------YTNNEIDERDLYSTALRFRLLRQYDFSVSQEVFD 148
Query: 142 RFKDSDG-NFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAHQISSP 200
FK++ G +FK SL D RG+L L+EA+ L E L A F T L+
Sbjct: 149 CFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDIN 208
Query: 201 LAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGD 260
L ++ AL P H +Q AR +I Y+ + N +L AKLDFN +Q Q+EL +
Sbjct: 209 LLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKE 268
Query: 261 ISR---------------DRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDV 305
SR DRI ECY+W GV Q+ + R +LTK+ ++ +TIDD++D+
Sbjct: 269 ASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDI 328
Query: 306 YGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAK 365
YG +EEL+LFT+AI+RWDI ++ QLP YM++CY AL + +E D Y +
Sbjct: 329 YGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLR 388
Query: 366 KAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVT-SAYPMLSTTSFVGMGDIVTKESFE 424
K ++++Y EAKW ++ + P+++EYM + ++ P+LS F + D + +E+ E
Sbjct: 389 KVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHL-FFRLTDSIEEEAAE 447
Query: 425 WLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFRKQV 484
+ +RAS + RL DDM + E RG V SV+CYM + A+EEEA R +
Sbjct: 448 SMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLI 507
Query: 485 SNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYED---GYTHSAV--VLKDFV 537
WK +N++ + + + NL R+ IY++E G HS V +L+D +
Sbjct: 508 DQTWKMMNKEMMTSS-FSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLL 564
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 289 bits (739), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 174/516 (33%), Positives = 281/516 (54%), Gaps = 43/516 (8%)
Query: 75 LDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLG---DNENDELYYISLQFRLLRQH 131
L ++D I RLG+ HFE EI E L ++ + G+G N +L +L FRLLR H
Sbjct: 302 LLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLH 361
Query: 132 GYKISADVFKRFKDSDGNFKTSLA---KDVRGMLSLFEATHLGVHEENILDEALAFTTSQ 188
Y +S +F FKD++G F S KDV ML+L+ A+ L ENILDEA +F T
Sbjct: 362 RYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKY 421
Query: 189 L-ESIAAHQISSP------LAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSS------- 234
L E++ + SS L++++K+AL H + R+EA+ Y +Y+ +
Sbjct: 422 LREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVY 481
Query: 235 -----HNEALLTFAKLDFNKLQKLHQKELGDIS--------------RDRIAECYFWILG 275
+NE L KLDFN +Q +HQ+E+ +++ R+R E YF +
Sbjct: 482 KLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPLFTFARERPLEFYFLVAA 541
Query: 276 VYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMK 335
+EPQY+ R + TKV + + +DD+YD YG ++EL+LFT A++RWD+S + LP+YMK
Sbjct: 542 GTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMK 601
Query: 336 LCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMT 395
LCY+ D+ E + + + + +K ++ + Y+ EA+W Y+PT+DEY+
Sbjct: 602 LCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIK 661
Query: 396 VALVTSAYPMLSTTSFVGM-GDIVTKESFEWLFSNPR--FIRASSVVCRLMDDMASHEFE 452
+ + +L + + M G ++++E+ E + R +S++ RL DD +++ E
Sbjct: 662 NGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAE 721
Query: 453 QSRGHVASSVECYMKQHG-ATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILN 511
++RG +ASS+ECYMK H TEEEA + + A K++ + L+P +P +
Sbjct: 722 KARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPFACKKMLFE 781
Query: 512 LTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVPI 547
TRV VI+K DG+ S + +KD + LI P+P+
Sbjct: 782 ETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 254 bits (649), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 271/523 (51%), Gaps = 48/523 (9%)
Query: 70 PSQNNLDL------IDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLG---DNENDELYY 120
P LDL +D ++RLG+ HF+ EI E L ++ + G+G +N ++
Sbjct: 263 PCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDD 322
Query: 121 ISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRG---MLSLFEATHLGVHEENI 177
++ R+LR HGY +S+DV K F+D +G F L + RG ML++ +H+ E I
Sbjct: 323 TAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETI 382
Query: 178 LDEALAFTT----SQLESIAAHQ---ISSPLAEQVKHALIQPIHRGLQRLEARHYI---- 226
++EA T + LE++ A + +V++AL P H+ + RLEAR YI
Sbjct: 383 MEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYG 442
Query: 227 --------PIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGDI--------------SRD 264
+Y NE L AKLDFNK+Q +HQ EL D+ +R+
Sbjct: 443 PDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTDLNFTRE 502
Query: 265 RIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDI 324
R+ E YF FEP++S R + TK + T +DD+YD +G +++L+LFT ++KRWD+
Sbjct: 503 RVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDL 562
Query: 325 SAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQ 384
S +DQ+P+ MK+C+ + +++ K+ + L Y + K ++ Y EA+W
Sbjct: 563 SLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEA 622
Query: 385 NYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMD 444
Y+P+ +EY+ A V+ A + S + G+++T E + RF++ + RL++
Sbjct: 623 KYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVN 682
Query: 445 DMASHEFEQSRGHVASSVECYMKQHGA-TEEEACNEFRKQVSNAWKDINEDCLRPTVLPM 503
D +++ E+ +G VAS+++CYMK H +EEEA + NA +++N + + + P
Sbjct: 683 DTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNKI-PD 741
Query: 504 PLLMRILNLTRVIDVIYKYEDGYTHS-AVVLKDFVASLLINPV 545
+ R++ + Y DG T S + +K+ V + L PV
Sbjct: 742 IYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPV 784
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 154/509 (30%), Positives = 255/509 (50%), Gaps = 38/509 (7%)
Query: 75 LDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLG---DNENDELYYISLQFRLLRQH 131
L L+D I+ LG+ HF+ EI L ++ + G+G D+ +L +L R LR H
Sbjct: 250 LSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMH 309
Query: 132 GYKISADVFKRFKDSDGNFKTSLAK---DVRGMLSLFEATHLGVHEENILDEALAFTTSQ 188
GY +S+DV FKD +G F +S + ++R +++LF A+ L +E +D+A F
Sbjct: 310 GYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPY 369
Query: 189 LESIAAHQISS--PLAEQVKHALIQPIHRGLQRLEARHYI------------PIYQEQSS 234
L A +IS+ L +++++ + P H + RLEAR YI +Y+ S
Sbjct: 370 LREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSL 429
Query: 235 HNEALLTFAKLDFNKLQKLHQKELG--------------DISRDRIAECYFWILGVYFEP 280
N L AKLDFN +Q LHQ+EL + +R R+AE YF FEP
Sbjct: 430 SNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMADINFTRHRVAEVYF--SSATFEP 487
Query: 281 QYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRA 340
+YS R TK+ + DD+ D++ ++EL+ FT +KRWD S + ++PE M+ C++
Sbjct: 488 EYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKV 547
Query: 341 LLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVT 400
+ E D+ L + +K + Y E +W YIPT +EY+ ++
Sbjct: 548 WFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAIS 607
Query: 401 SAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVAS 460
+ + MG++V + E + S+ RL +D +++ E++RG AS
Sbjct: 608 VGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQAS 667
Query: 461 SVECYMKQH-GATEEEACNEFRKQVSNAWKDINEDCLRPTV-LPMPLLMRILNLTRVIDV 518
+ CYMK + GATEE+A + V A K+ + + +P+ +PM I NL + +
Sbjct: 668 GIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQI 727
Query: 519 IYKYEDGYTHSAVVLKDFVASLLINPVPI 547
YK+ DGY + +KD++ + I+P+ +
Sbjct: 728 FYKFIDGYGIANEEIKDYIRKVYIDPIQV 756
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 115/263 (43%), Gaps = 41/263 (15%)
Query: 77 LIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYI---SLQFRLLRQHGY 133
++D +QRLG+S +FE EI E L +H D G+ + I ++ FRLLRQHGY
Sbjct: 251 IVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGY 310
Query: 134 KISADVFKRFKDSDGNFKTSLAKD---VRGMLSLFEATHLGVHEENILDEALAFTTSQL- 189
++SADVFK F + +G F + + V GM +L+ A+ L E IL A F+ + L
Sbjct: 311 QVSADVFKNF-EKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLL 369
Query: 190 ------ESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYI-------------PIYQ 230
E I I L ++ AL P + L R+E R YI +Y+
Sbjct: 370 EKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYR 429
Query: 231 EQSSHNEALLTFAKLDFNKLQKLHQKELG--------------DISRDRIAECYFWILGV 276
+N L AK D+N Q HQ E + R + ECY+
Sbjct: 430 MPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLSEWGVRRSELLECYYLAAAT 489
Query: 277 YFEPQYSFARRILTKVISMTSTI 299
FE + S R + K + I
Sbjct: 490 IFESERSHERMVWAKSSVLVKAI 512
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 236 NEALLTFAKLDFNKLQKLHQK--ELGDISRD---RIAECYFWILGVYF-EPQYSFARRIL 289
N+A + F K D+NK ++L +K E+G +R+ +IA+ Y I YF E +Y A
Sbjct: 43 NQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY 102
Query: 290 TKVISMTSTID 300
K ++ T D
Sbjct: 103 NKSLAEHRTPD 113
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 236 NEALLTFAKLDFNKLQKLHQK--ELGDISRD---RIAECYFWILGVYF-EPQYSFARRIL 289
N+A + F K D+NK ++L +K E+G +R+ +IA+ Y I YF E +Y A
Sbjct: 43 NQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY 102
Query: 290 TKVISMTSTID 300
K ++ T D
Sbjct: 103 NKSLAEHRTPD 113
>pdb|3MEB|A Chain A, Structure Of Cytoplasmic Aspartate Aminotransferase From
Giardia Lamblia
pdb|3MEB|B Chain B, Structure Of Cytoplasmic Aspartate Aminotransferase From
Giardia Lamblia
Length = 448
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 345 YSEAEKDL--APQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSA 402
+S +KD+ AP+ ++ H I F EA+W + +P M E +A SA
Sbjct: 189 FSNTKKDIQSAPEKSIFLFHACAHNPSGID---FTEAQW--KELLPIMKEKKHIAFFDSA 243
Query: 403 YPMLSTTSF 411
Y +T SF
Sbjct: 244 YQGFATGSF 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,632,333
Number of Sequences: 62578
Number of extensions: 643811
Number of successful extensions: 1711
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1586
Number of HSP's gapped (non-prelim): 24
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)