Query 039366
Match_columns 547
No_of_seqs 225 out of 899
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:59:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 7E-149 2E-153 1228.5 49.7 519 23-544 1-542 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 5E-133 1E-137 1124.7 44.0 470 69-547 268-778 (784)
3 PLN02592 ent-copalyl diphospha 100.0 1E-105 2E-110 899.3 38.1 435 69-546 308-800 (800)
4 PF01397 Terpene_synth: Terpen 100.0 7.1E-56 1.5E-60 422.2 11.6 174 33-209 1-183 (183)
5 PF03936 Terpene_synth_C: Terp 100.0 1.5E-44 3.2E-49 364.0 21.5 254 239-492 1-270 (270)
6 cd00868 Terpene_cyclase_C1 Ter 100.0 7.2E-43 1.6E-47 354.3 27.9 267 254-520 2-284 (284)
7 cd00687 Terpene_cyclase_nonpla 100.0 6.8E-33 1.5E-37 285.2 18.7 228 263-495 35-265 (303)
8 PLN02150 terpene synthase/cycl 100.0 1E-30 2.2E-35 224.5 10.0 95 453-547 1-96 (96)
9 cd00385 Isoprenoid_Biosyn_C1 I 99.9 4.6E-21 1E-25 186.1 13.5 229 272-514 2-243 (243)
10 PF06330 TRI5: Trichodiene syn 97.7 0.00048 1E-08 72.5 12.3 192 280-493 79-275 (376)
11 cd00686 Terpene_cyclase_cis_tr 97.5 0.0015 3.4E-08 67.7 13.7 215 261-498 58-279 (357)
12 PF00494 SQS_PSY: Squalene/phy 92.2 5.2 0.00011 40.3 15.3 194 269-493 7-217 (267)
13 cd00867 Trans_IPPS Trans-Isopr 90.1 5.2 0.00011 39.3 12.7 118 360-493 86-214 (236)
14 TIGR03465 HpnD squalene syntha 89.9 24 0.00052 35.8 18.9 204 269-510 7-224 (266)
15 cd00683 Trans_IPPS_HH Trans-Is 87.5 25 0.00055 35.5 15.8 208 269-513 13-236 (265)
16 cd00685 Trans_IPPS_HT Trans-Is 86.4 19 0.00041 36.4 14.2 121 359-493 108-239 (259)
17 TIGR03464 HpnC squalene syntha 86.1 42 0.0009 34.1 18.4 122 268-414 6-131 (266)
18 PLN02890 geranyl diphosphate s 80.7 44 0.00096 36.5 14.8 89 359-451 227-315 (422)
19 TIGR02749 prenyl_cyano solanes 80.5 75 0.0016 33.4 16.1 88 359-450 133-220 (322)
20 PLN02857 octaprenyl-diphosphat 80.4 33 0.00072 37.4 13.7 88 359-450 227-314 (416)
21 PF10776 DUF2600: Protein of u 74.2 1.2E+02 0.0027 32.0 15.5 116 408-541 196-311 (330)
22 TIGR02748 GerC3_HepT heptapren 68.7 1.2E+02 0.0027 31.6 14.1 86 360-450 130-216 (319)
23 PLN02632 phytoene synthase 68.1 1.7E+02 0.0036 31.0 17.5 218 245-506 47-281 (334)
24 COG0142 IspA Geranylgeranyl py 67.6 1.1E+02 0.0024 32.0 13.5 107 359-470 134-250 (322)
25 CHL00151 preA prenyl transfera 57.7 2.5E+02 0.0054 29.4 15.9 86 360-451 135-222 (323)
26 KOG1719 Dual specificity phosp 57.3 8.4 0.00018 36.2 2.5 30 454-483 119-149 (183)
27 PRK10888 octaprenyl diphosphat 50.2 3.3E+02 0.0071 28.6 16.1 89 359-451 130-218 (323)
28 COG3707 AmiR Response regulato 47.9 15 0.00033 35.7 2.7 46 439-484 127-173 (194)
29 PF03861 ANTAR: ANTAR domain; 43.8 22 0.00047 27.3 2.5 28 458-485 15-42 (56)
30 KOG3730 Acyl-CoA:dihydroxyacte 34.3 2.5E+02 0.0054 31.2 9.4 77 457-545 76-152 (685)
31 PF13798 PCYCGC: Protein of un 31.7 52 0.0011 31.0 3.4 34 464-504 125-158 (158)
32 PF12368 DUF3650: Protein of u 29.3 42 0.00092 22.4 1.7 17 464-480 9-25 (28)
33 PF00348 polyprenyl_synt: Poly 27.9 6.2E+02 0.013 25.3 10.9 80 370-452 114-194 (260)
34 PRK10581 geranyltranstransfera 27.5 6.5E+02 0.014 26.1 11.1 112 369-493 152-276 (299)
35 smart00400 ZnF_CHCC zinc finge 26.9 67 0.0015 24.3 2.8 25 456-480 30-54 (55)
36 KOG1720 Protein tyrosine phosp 25.3 59 0.0013 32.2 2.7 28 455-482 158-186 (225)
37 smart00463 SMR Small MutS-rela 24.2 91 0.002 25.3 3.3 23 469-491 7-29 (80)
38 PF06603 UpxZ: UpxZ family of 22.1 95 0.0021 27.2 3.0 71 430-508 25-98 (106)
39 KOG3951 Uncharacterized conser 20.9 1.2E+02 0.0027 30.8 4.0 60 140-209 260-319 (321)
40 PF01713 Smr: Smr domain; Int 20.9 98 0.0021 25.3 2.9 26 469-494 4-29 (83)
41 COG1308 EGD2 Transcription fac 20.2 96 0.0021 28.0 2.8 22 461-482 87-108 (122)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=7.3e-149 Score=1228.45 Aligned_cols=519 Identities=55% Similarity=0.911 Sum_probs=496.5
Q ss_pred CCCCCCCCCCCcc-CccccCCCCcchhhhHHHHHHHHHHHHHHhhc---cCCcccchhhHHHHHHhCcccccHHHHHHHH
Q 039366 23 RRSANFHPSIWGD-RFLSYTSDSMEKDDGSAKHQELKEEIRRMLKI---NKPSQNNLDLIDAIQRLGVSYHFESEIDEIL 98 (547)
Q Consensus 23 r~~~~~~ps~W~~-~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~~---~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L 98 (547)
|++++||||+||| +|++++++..+...+.+++++||++||+||.. ..|++++|+|||+||||||+|||++||+++|
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L 80 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEIL 80 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Confidence 7899999999999 77776655433337899999999999999986 5799999999999999999999999999999
Q ss_pred HHhHhhccCCCCCCCCCCchhHHHHHHHHHHhcCccccccccccccccccccccccccchhhhhhhhhhhccCCCCchHH
Q 039366 99 GKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENIL 178 (547)
Q Consensus 99 ~~i~~~~~~~~~~~~~~~dl~~~al~FRLLR~~Gy~vS~Dvf~~F~d~~g~F~~~l~~dv~~lL~LyeAs~l~~~gE~iL 178 (547)
++||+.|...| .....||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+||
T Consensus 81 ~~i~~~~~~~~--~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iL 158 (542)
T cd00684 81 DYIYRYWTERG--ESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDIL 158 (542)
T ss_pred HHHHHhhcccc--cccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHH
Confidence 99999853222 1135799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHhh---cCCCChHHHHHHhcCCCcccCchhhHHhhchhhhcccCcCcHHHHHHHhhchHHHHHHHH
Q 039366 179 DEALAFTTSQLESIAAH---QISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQ 255 (547)
Q Consensus 179 dea~~ft~~~L~~~~~~---~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq 255 (547)
|||++||++||+++++. + +++|+++|++||++|||+++||||||+||++|++++++|++||||||+|||+||++||
T Consensus 159 deA~~ft~~~L~~~~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq 237 (542)
T cd00684 159 DEALSFTTKHLEEKLESNWII-DPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQ 237 (542)
T ss_pred HHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHH
Confidence 99999999999999886 5 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhh---------------hhhHHHHHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHh
Q 039366 256 KELGDIS---------------RDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIK 320 (547)
Q Consensus 256 ~EL~~l~---------------Rdr~ve~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aie 320 (547)
+||++++ |||++|||||++|++|+|++|.+|+++||+++|+|++||+||.|||++|++.||+||+
T Consensus 238 ~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~ 317 (542)
T cd00684 238 EELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVE 317 (542)
T ss_pred HHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhccCChhHHHHHHHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcc
Q 039366 321 RWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVT 400 (547)
Q Consensus 321 rWD~~~~~~lPeymk~~f~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS 400 (547)
|||.++++++|+|||+||.+|+++++++++++.++++.++++|++++|+++++||++||+|+++|++||++|||++|.+|
T Consensus 318 rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S 397 (542)
T cd00684 318 RWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVS 397 (542)
T ss_pred hccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHH
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhCCCCHHHHHHHH
Q 039366 401 SAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEF 480 (547)
Q Consensus 401 ~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i 480 (547)
+|++++++++++++|+.+|+++++|+..+|+|+++++.++||+|||+|+++|+++|+++|+|.|||+|+|+|+|+|++++
T Consensus 398 ~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i 477 (542)
T cd00684 398 IGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEI 477 (542)
T ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999999999997777999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCC-CCCCHHHHHHHHHHhhhhhceeccCCCCCCCchhHHHHHHhhhccc
Q 039366 481 RKQVSNAWKDINEDCLRP-TVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINP 544 (547)
Q Consensus 481 ~~~I~~~wk~ln~e~l~~-~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~P 544 (547)
+++|+++||++|++++++ +++|++|+++++|+||+++++|+++||||.|++.||++|++||++|
T Consensus 478 ~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p 542 (542)
T cd00684 478 KKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542 (542)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence 999999999999999987 7899999999999999999999999999999878999999999998
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=4.6e-133 Score=1124.69 Aligned_cols=470 Identities=27% Similarity=0.437 Sum_probs=444.1
Q ss_pred CCcccchhhHHHHHHhCcccccHHHHHHHHHHhHhhccCCCCCCCCCCchhHHHHHHHHHHhcCcccccccccccccccc
Q 039366 69 KPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDG 148 (547)
Q Consensus 69 ~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRLLR~~Gy~vS~Dvf~~F~d~~g 148 (547)
.+.++++|+||+||||||+|||++||+++|+++|+.| ..|. .....|+++|||+|||||||||+||||||++|+|+ +
T Consensus 268 ~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~-~~~~-~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~-~ 344 (784)
T PLN02279 268 LDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYW-LQGE-EEIFLDLATCALAFRILRLNGYDVSSDPLKQFAED-H 344 (784)
T ss_pred ccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhh-cccc-cCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCC-c
Confidence 5899999999999999999999999999999999974 2221 11347999999999999999999999999999965 4
Q ss_pred cccccc---ccchhhhhhhhhhhccCCCCchHHHHHHHHhHHHHHHHHhh------cCCCChHHHHHHhcCCCcccCchh
Q 039366 149 NFKTSL---AKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAH------QISSPLAEQVKHALIQPIHRGLQR 219 (547)
Q Consensus 149 ~F~~~l---~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~------~~~~~l~~~V~~aL~~P~~~~~~r 219 (547)
|++++ .+||+||||||||||+++|||.|||||+.||++||+++++. ...++|+++|+|||++|||+++||
T Consensus 345 -F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~R 423 (784)
T PLN02279 345 -FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLER 423 (784)
T ss_pred -ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccH
Confidence 99998 59999999999999999999999999999999999998873 126789999999999999999999
Q ss_pred hHHhhchhhhcccCc------------CcHHHHHHHhhchHHHHHHHHHHhhhhh--------------hhhHHHHHhhh
Q 039366 220 LEARHYIPIYQEQSS------------HNEALLTFAKLDFNKLQKLHQKELGDIS--------------RDRIAECYFWI 273 (547)
Q Consensus 220 le~r~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~EL~~l~--------------Rdr~ve~yfw~ 273 (547)
||||+||++|++++. +|++||||||+|||+||++||+||++|+ |||++|||||+
T Consensus 424 lEaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L~~L~faRdr~ve~Yf~a 503 (784)
T PLN02279 424 LANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRLDKLKFARQKLAYCYFSA 503 (784)
T ss_pred HHHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCCccCCchhhHHHHHHHHH
Confidence 999999999998875 8999999999999999999999999999 99999999999
Q ss_pred hccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhhccch-hhccCChhHHHHHHHHHHHHHHHHHHH
Q 039366 274 LGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDIS-AIDQLPEYMKLCYRALLDVYSEAEKDL 352 (547)
Q Consensus 274 ~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aierWD~~-~~~~lPeymk~~f~al~~~~~ei~~~~ 352 (547)
+|++|||+||.+|++|||.+++++++||+||+|||+|||+.||+||+|||.+ .++.+|+|||+||.+|++++++++.++
T Consensus 504 aa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~~~~ 583 (784)
T PLN02279 504 AATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIGDKA 583 (784)
T ss_pred HHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 679999999999999999999999875
Q ss_pred c-ccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcchhH
Q 039366 353 A-PQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPR 431 (547)
Q Consensus 353 ~-~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~ 431 (547)
. ++|+ ++++|++++|++++++|++||+|+.+||+||++|||+|+.+|+|+++++.++++++|..+|+++++| +++|+
T Consensus 584 ~~~qGr-~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~l~eev~e~-~~~~~ 661 (784)
T PLN02279 584 FTWQGR-NVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPKLSEEVVDS-PELHK 661 (784)
T ss_pred HHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCCCCHHHHhC-cchhH
Confidence 4 5665 8999999999999999999999999999999999999999999999999999999999999999999 79999
Q ss_pred HHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhC--CCCHHHHHHHHHHHHHHHHHHHhhhccCC--CCCCHHHHH
Q 039366 432 FIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQH--GATEEEACNEFRKQVSNAWKDINEDCLRP--TVLPMPLLM 507 (547)
Q Consensus 432 l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~--g~S~EeA~~~i~~~I~~~wk~ln~e~l~~--~~~p~~~~~ 507 (547)
|+++++.|+||+|||+||++|+++|++ |+|+|||+|+ |+|+|||+++++++|+++||+||++++++ +++|++|++
T Consensus 662 L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~~l~~~~~~vp~~~~~ 740 (784)
T PLN02279 662 LYKLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRLVLQEKGSNVPRECKD 740 (784)
T ss_pred HHHHHHHHHHHHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 999999999999999999999999998 9999999986 89999999999999999999999999964 579999999
Q ss_pred HHHHHhhhhhceeccCCCCCCCchhHHHHHHhhhccccCC
Q 039366 508 RILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVPI 547 (547)
Q Consensus 508 ~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 547 (547)
++||++|++++||+++||||.+ .||++|++||++||++
T Consensus 741 ~~ln~aR~~~~~Y~~~Dgyt~~--~~k~~i~~ll~ePi~l 778 (784)
T PLN02279 741 LFWKMSKVLHLFYRKDDGFTSN--DMMSLVKSVIYEPVSL 778 (784)
T ss_pred HHHHHHHhhhhheeCCCCCChH--HHHHHHHHHhccCCcC
Confidence 9999999999999999999975 5999999999999985
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=1e-105 Score=899.28 Aligned_cols=435 Identities=23% Similarity=0.313 Sum_probs=392.1
Q ss_pred CCcccchhhHHHHHHhCcccccHHHHHHHHHHhHhhccCCCCCCC---CCCchhHHHHHHHHHHhcCccccccccccccc
Q 039366 69 KPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDN---ENDELYYISLQFRLLRQHGYKISADVFKRFKD 145 (547)
Q Consensus 69 ~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~---~~~dl~~~al~FRLLR~~Gy~vS~Dvf~~F~d 145 (547)
.|++++||+||+||||||+|||++||+++|+++|++|...|+++. ...|+++|||+|||||||||+||||||++|++
T Consensus 308 ~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~ 387 (800)
T PLN02592 308 VDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEK 387 (800)
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcC
Confidence 589999999999999999999999999999999997543344331 24799999999999999999999999999986
Q ss_pred ccccccccc---ccchhhhhhhhhhhccCCCCchHHHHHHHHhHHHHHHHHh--hc-----CCCChHHHHHHhcCCCccc
Q 039366 146 SDGNFKTSL---AKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAA--HQ-----ISSPLAEQVKHALIQPIHR 215 (547)
Q Consensus 146 ~~g~F~~~l---~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~--~~-----~~~~l~~~V~~aL~~P~~~ 215 (547)
+|+|++++ .+|++|||+||||||+++|||.|||+|+.||++||++.+. ++ ..++|+++|+|||++|||+
T Consensus 388 -~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~ 466 (800)
T PLN02592 388 -GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYA 466 (800)
T ss_pred -CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhc
Confidence 89999766 7999999999999999999999999999999999999863 11 2568999999999999999
Q ss_pred CchhhHHhhchhhhcccCcC-------------cHHHHHHHhhchHHHHHHHHHHhhhhh--------------hhhHHH
Q 039366 216 GLQRLEARHYIPIYQEQSSH-------------NEALLTFAKLDFNKLQKLHQKELGDIS--------------RDRIAE 268 (547)
Q Consensus 216 ~~~rle~r~yI~~y~~~~~~-------------n~~lLelAkldFn~~Q~~hq~EL~~l~--------------Rdr~ve 268 (547)
++||||||+||++|++++++ |++||||||+|||+||++||+||++++ |||++|
T Consensus 467 ~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L~~L~faRdr~ve 546 (800)
T PLN02592 467 SLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNLGEFGVSRSELLL 546 (800)
T ss_pred CcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCCCcCCcchhHHHH
Confidence 99999999999999987664 999999999999999999999999999 999999
Q ss_pred HHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHh--------hccchhhccCCh------hH
Q 039366 269 CYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIK--------RWDISAIDQLPE------YM 334 (547)
Q Consensus 269 ~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aie--------rWD~~~~~~lPe------ym 334 (547)
||||++|++|||+||.+|++|||.+++++++||+||+|||+|||+.||++|+ |||.+.+++||+ ||
T Consensus 547 ~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~~~m 626 (800)
T PLN02592 547 AYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSVKTG 626 (800)
T ss_pred HHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccchhHH
Confidence 9999999999999999999999999999999999999999999999999996 999999999988 99
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHH-h
Q 039366 335 KLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFV-G 413 (547)
Q Consensus 335 k~~f~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~-~ 413 (547)
|+||.|||+++|+++.++.+.+|.++.+|++++|.++|+ +|..+|+ +|+|+..+++++++ .
T Consensus 627 ki~f~aLy~tineia~~a~~~qGr~v~~~L~~~W~~l~~------~w~~~g~------------~s~~~~~ilv~~~~l~ 688 (800)
T PLN02592 627 EELVGLLLGTLNQLSLDALEAHGRDISHLLRHAWEMWLL------KWLLEGD------------GRQGEAELLVKTINLT 688 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH------HHHhcCc------------eeccchhhHHHHHHHh
Confidence 999999999999999887776666899999999999999 6766665 45566667777777 5
Q ss_pred cCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhCC-CCHHHHHHHHHHHHHHHHHHHh
Q 039366 414 MGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHG-ATEEEACNEFRKQVSNAWKDIN 492 (547)
Q Consensus 414 ~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g-~S~EeA~~~i~~~I~~~wk~ln 492 (547)
+|..+|+++++ +|++.++++.+.||+||++|+++|... .| +|+ +|.+++.+.|+.++++|.
T Consensus 689 ~g~~lsee~l~----~~~~~~l~~li~Rl~nDl~t~~~e~~~-------------~~~~~~-~a~~~~~~~ie~~~~eL~ 750 (800)
T PLN02592 689 AGRSLSEELLA----HPQYEQLAQLTNRICYQLGHYKKNKVH-------------INTYNP-EEKSKTTPSIESDMQELV 750 (800)
T ss_pred cCCCCCHHHcc----chhHHHHHHHHHHHHHhhhHHhhhccc-------------CCcccH-HHHHHHHHHHHHHHHHHH
Confidence 69999999986 588899999999999999999998741 23 345 899999999999999999
Q ss_pred hhccC-C-CCCCHHHHHHHHHHhhhhhceeccCCCCCCCchhHHHHHHhhhccccC
Q 039366 493 EDCLR-P-TVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVP 546 (547)
Q Consensus 493 ~e~l~-~-~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 546 (547)
+.+++ . +.||++|+++|||++|+ ||.. ||++|. .|+.+|+.||++||+
T Consensus 751 ~lvl~~~~~~vp~~cK~~f~~~~k~---fy~~--~~~~~~-~~~~~i~~vl~epv~ 800 (800)
T PLN02592 751 QLVLQNSSDDIDPVIKQTFLMVAKS---FYYA--AYCDPG-TINYHIAKVLFERVA 800 (800)
T ss_pred HHHhhcCCCCCCHHHHHHHHHHHHH---HHHh--hcCCHH-HHHHHHHHHhCCCCC
Confidence 99996 3 56999999999999994 4554 999995 699999999999985
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=7.1e-56 Score=422.17 Aligned_cols=174 Identities=52% Similarity=0.843 Sum_probs=146.5
Q ss_pred CccCccc-----cCCCCc-chhhhHHHHHHHHHHHHHHhhccC-CcccchhhHHHHHHhCcccccHHHHHHHHHHhHhhc
Q 039366 33 WGDRFLS-----YTSDSM-EKDDGSAKHQELKEEIRRMLKINK-PSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAH 105 (547)
Q Consensus 33 W~~~fl~-----~~~~~~-~~~~~~~~~~~lk~~v~~~l~~~~-~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~ 105 (547)
|||+||+ ++++.. ..+.+.+++++||++||.||.... |+.++|+|||+||||||+|||++||+++|+++|+.|
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~ 80 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSW 80 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTT
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhc
Confidence 9999994 222211 346789999999999999998764 899999999999999999999999999999999974
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHhcCccccccccccccccccccccccccchhhhhhhhhhhccCCCCchHHHHHHHHh
Q 039366 106 QDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFT 185 (547)
Q Consensus 106 ~~~~~~~~~~~dl~~~al~FRLLR~~Gy~vS~Dvf~~F~d~~g~F~~~l~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft 185 (547)
...+. ...||++|||+|||||||||+||||||++|+|++|+|+.++.+||+||||||||||++++||+|||||+.||
T Consensus 81 ~~~~~---~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft 157 (183)
T PF01397_consen 81 DEDNE---EIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFT 157 (183)
T ss_dssp TTTSH---TSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHH
T ss_pred ccccc---ccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHH
Confidence 32111 224999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCC--CChHHHHHHhc
Q 039366 186 TSQLESIAAHQIS--SPLAEQVKHAL 209 (547)
Q Consensus 186 ~~~L~~~~~~~~~--~~l~~~V~~aL 209 (547)
++||++.+++... ++|+++|+|||
T Consensus 158 ~~~L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 158 TKHLKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHhC
Confidence 9999999885422 24999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=1.5e-44 Score=364.03 Aligned_cols=254 Identities=29% Similarity=0.438 Sum_probs=234.2
Q ss_pred HHHHHhhchHHHHHHHHHHhhhhh---------------hhhHHHHHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhh
Q 039366 239 LLTFAKLDFNKLQKLHQKELGDIS---------------RDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIY 303 (547)
Q Consensus 239 lLelAkldFn~~Q~~hq~EL~~l~---------------Rdr~ve~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~f 303 (547)
+|+|||+|||+||++||+|++++. |+|++.++|+.++.++.|..+..|+++||+++|+|++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 689999999999999999999998 79999999999999999997778889999999999999999
Q ss_pred cccCCHHHHHHHHHHHhhccchhhccCChhHHHHHHHHHHHHHHHHHHHccc-CCccHHHHHHHHHHHHHHHHHHHHHHh
Q 039366 304 DVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQ-GKLYRLHYAKKAMKNIVKNYFFEAKWC 382 (547)
Q Consensus 304 D~ygt~eEl~~ft~aierWD~~~~~~lPeymk~~f~al~~~~~ei~~~~~~~-~~~~~~~~l~~~w~~~~~a~l~EAkW~ 382 (547)
|.+|+.++++.|+++++||+....+.+|+++++++.++.++++++...+.+. ++..+.+++++.|.+|++++++|++|+
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 160 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAYLWEARWR 160 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999888888999999999999999999998777663 222356789999999999999999999
Q ss_pred hCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCcchh
Q 039366 383 HQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSV 462 (547)
Q Consensus 383 ~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V 462 (547)
..|++||++||+++|+.|+|+++++.++.+++|..++++..+++...+.+.++++.+++|+|||.||+||+++|+.+|.|
T Consensus 161 ~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~~g~~~N~v 240 (270)
T PF03936_consen 161 ERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFALGELPPEVLEHPPMLRRLAADIIRLVNDLYSYKKEIARGDVHNLV 240 (270)
T ss_dssp HTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSCHTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSHH
T ss_pred ccCCCCCHHHHHHhccccccccHHHHHHHHhCCCccccccHHHHHhchHHHHHHHHHHHHhcccchhhcchhhcccccHH
Confidence 99999999999999999999999999999999777776666666666779999999999999999999999999999999
Q ss_pred hHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 039366 463 ECYMKQHGATEEEACNEFRKQVSNAWKDIN 492 (547)
Q Consensus 463 ~cyMke~g~S~EeA~~~i~~~I~~~wk~ln 492 (547)
.|+|+++|+|.|+|++++.+|+++++++||
T Consensus 241 ~~l~~~~~~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 241 VVLMNEHGLSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=100.00 E-value=7.2e-43 Score=354.25 Aligned_cols=267 Identities=52% Similarity=0.920 Sum_probs=249.2
Q ss_pred HHHHhhhhh---------------hhhHHHHHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHH
Q 039366 254 HQKELGDIS---------------RDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSA 318 (547)
Q Consensus 254 hq~EL~~l~---------------Rdr~ve~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~a 318 (547)
||+|+++++ |.+..++|+|+++++|+|+.+..|+++||+++|+|++||.||.+|+.+++..++++
T Consensus 2 ~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~~ 81 (284)
T cd00868 2 HQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTEA 81 (284)
T ss_pred CHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHH
Confidence 677777666 88899999999999999998999999999999999999999999999999999999
Q ss_pred HhhccchhhccCChhHHHHHHHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhh
Q 039366 319 IKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVAL 398 (547)
Q Consensus 319 ierWD~~~~~~lPeymk~~f~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~ 398 (547)
++||+....+.+|+++++++.+++++++++...+.++++.....++++.|.+++.++.+|++|+..|++||++||+.+|.
T Consensus 82 ~~~~~~~~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R~ 161 (284)
T cd00868 82 VERWDISAIDELPEYMKPVFKALYDLVNEIEEELAKEGGSESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENRR 161 (284)
T ss_pred HHhcChhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhce
Confidence 99999988899999999999999999999998887766667799999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhCCCCHHHHHH
Q 039366 399 VTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACN 478 (547)
Q Consensus 399 iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~ 478 (547)
.|+|+++++.++++++|..+|++.+.+.+.++++++.++.+++|+||++||+||+.+|+.+|+|.|||+++|+|.++|++
T Consensus 162 ~~~g~~~~~~l~~~~~g~~l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~N~v~vl~~~~~~~~~eA~~ 241 (284)
T cd00868 162 VSIGYPPLLALSFLGMGDILPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKEYGVSEEEALE 241 (284)
T ss_pred ehhhHHHHHHHHHHHcCCCCCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHHHccCCcccHHHHHHhccCCCHHHHHH
Confidence 99999999999999999999994444449999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCC-CCCCHHHHHHHHHHhhhhhcee
Q 039366 479 EFRKQVSNAWKDINEDCLRP-TVLPMPLLMRILNLTRVIDVIY 520 (547)
Q Consensus 479 ~i~~~I~~~wk~ln~e~l~~-~~~p~~~~~~~lN~aR~~~~~Y 520 (547)
++.++++++|++|++.+.+. ++.|+.+++.+.|++|.....|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~w~ 284 (284)
T cd00868 242 ELRKMIEEAWKELNEEVLKLSSDVPRAVLETLLNLARGIYVWY 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhcC
Confidence 99999999999999998864 3678999999999999886654
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=100.00 E-value=6.8e-33 Score=285.15 Aligned_cols=228 Identities=17% Similarity=0.098 Sum_probs=204.8
Q ss_pred hhhHHHHHhhhhccccCCCchhHHH-HHHhhhhhhhhhhhhhcccC-CHHHHHHHHHHHhhccchhhccCChhHHHHHHH
Q 039366 263 RDRIAECYFWILGVYFEPQYSFARR-ILTKVISMTSTIDDIYDVYG-KIEELELFTSAIKRWDISAIDQLPEYMKLCYRA 340 (547)
Q Consensus 263 Rdr~ve~yfw~~~~~feP~~s~~Ri-~~aK~~~li~viDD~fD~yg-t~eEl~~ft~aierWD~~~~~~lPeymk~~f~a 340 (547)
|++.++++|+..+.++.|+++..|+ ..++++.|+|++||+||..| +++++..+++.+.++.......-|....++..+
T Consensus 35 ~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 114 (303)
T cd00687 35 EKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLDILRGDGLDSPDDATPLEFG 114 (303)
T ss_pred HHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHH
Confidence 7788888999888888899999999 66799999999999999874 899999999988887543221115677889999
Q ss_pred HHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcch
Q 039366 341 LLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTK 420 (547)
Q Consensus 341 l~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ 420 (547)
+.+++.++.....+ ....++++.|.+|+.++++|++|+.+|++||++||+++|+.|+|+.+++.++++++|..+|+
T Consensus 115 ~~d~~~r~~~~~~~----~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g~~~~~~l~~~~~g~~lp~ 190 (303)
T cd00687 115 LADLWRRTLARMSA----EWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGADPCLGLSEFIGGPEVPA 190 (303)
T ss_pred HHHHHHHhccCCCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhcccccccHHHHHHhcCCCCCH
Confidence 99999998654332 35789999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhcchhHHHHHHHHHHHHccCCcChHHhh-hcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 039366 421 ESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQ-SRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINEDC 495 (547)
Q Consensus 421 ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~-~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~e~ 495 (547)
++.++ +.+.++.++++.+++|+|||+||+||+ +.|+.+|+|.|+|+++|+|.|+|++++.++++++++++.+..
T Consensus 191 ~~~~~-~~~~~l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N~V~vl~~~~g~s~~eA~~~~~~~~~~~~~~f~~~~ 265 (303)
T cd00687 191 AVRLD-PVMRALEALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEHGLSLEEAISVVRDMHNERITQFEELE 265 (303)
T ss_pred HHHhC-hHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 888899999999999999999999999 899999999999999999999999999999999999988644
No 8
>PLN02150 terpene synthase/cyclase family protein
Probab=99.97 E-value=1e-30 Score=224.47 Aligned_cols=95 Identities=45% Similarity=0.781 Sum_probs=92.2
Q ss_pred hhcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhhhhce-eccCCCCCCCch
Q 039366 453 QSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVI-YKYEDGYTHSAV 531 (547)
Q Consensus 453 ~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~-Y~~~Dg~t~~~~ 531 (547)
++|||++|+|+|||||||+|+|||+++++++|+++||++|+|+++++++|.+++++++|+||+++|+ |++|||||.+++
T Consensus 1 ~~rg~vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN~e~l~~~~~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~~~ 80 (96)
T PLN02150 1 MRRGEVANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLTIKDVPRPVLVRCLNLARLIDVYCYNEGDGFTYPHG 80 (96)
T ss_pred CCCCcchHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhheecCCCCCCCCcH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999 999999998877
Q ss_pred hHHHHHHhhhccccCC
Q 039366 532 VLKDFVASLLINPVPI 547 (547)
Q Consensus 532 ~~k~~i~~ll~~Pi~~ 547 (547)
.+|++|++||++|||+
T Consensus 81 ~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 81 KLKDLITSLFFHPLPL 96 (96)
T ss_pred HHHHHHHHHhccCCCC
Confidence 8999999999999986
No 9
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.85 E-value=4.6e-21 Score=186.05 Aligned_cols=229 Identities=27% Similarity=0.339 Sum_probs=185.9
Q ss_pred hhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhhccchhhccCChhHHHHHHHHHHHHHHHHHH
Q 039366 272 WILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKD 351 (547)
Q Consensus 272 w~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aierWD~~~~~~lPeymk~~f~al~~~~~ei~~~ 351 (547)
|+++.++.|+++..|..++++..|++++||++|..++..+.......+ .....|..+...+..+.+.+.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAV------AIDGLPEAILAGDLLLADAFEELARE 75 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhH------HhcCchHHHHHHHHHHHHHHHHHHhC
Confidence 566778889989999999999999999999999888766655544332 12345677778888888888888643
Q ss_pred HcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcchhH
Q 039366 352 LAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPR 431 (547)
Q Consensus 352 ~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~ 431 (547)
.. .....++.+.|.+++.|+..|+.|... ..||++||+.++..++ +.++...+..+++...++ ..+.+...+
T Consensus 76 ~~----~~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t-~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 147 (243)
T cd00385 76 GS----PEALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKT-AGLVGALCLLGAGLSGGE--AELLEALRK 147 (243)
T ss_pred CC----HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhH-HHHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 22 345889999999999999999999876 8899999999999998 455555666666666665 334467788
Q ss_pred HHHHHHHHHHHccCCcChHHhhhcC-CCcchhhHHHhhCCC------------CHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039366 432 FIRASSVVCRLMDDMASHEFEQSRG-HVASSVECYMKQHGA------------TEEEACNEFRKQVSNAWKDINEDCLRP 498 (547)
Q Consensus 432 l~~~~~~i~RL~NDI~S~kkE~~rG-~~~n~V~cyMke~g~------------S~EeA~~~i~~~I~~~wk~ln~e~l~~ 498 (547)
+...++.+++|.||+.++.+|.++| ...|++.++|+++|+ +.++|.+++.++++++|+++++.....
T Consensus 148 ~~~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 227 (243)
T cd00385 148 LGRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELILSL 227 (243)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999996 678999999999998 889999999999999999999877543
Q ss_pred CCCCHHHHHHHHHHhh
Q 039366 499 TVLPMPLLMRILNLTR 514 (547)
Q Consensus 499 ~~~p~~~~~~~lN~aR 514 (547)
...+..+++.+++++|
T Consensus 228 ~~~~~~~~~~~~~~~~ 243 (243)
T cd00385 228 PDVPRALLALALNLYR 243 (243)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 2346677777777654
No 10
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=97.66 E-value=0.00048 Score=72.49 Aligned_cols=192 Identities=13% Similarity=0.082 Sum_probs=109.8
Q ss_pred CCch-hHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhhccchhhccCChhHHHHHHHHHHHHHHHHHHHcccCCc
Q 039366 280 PQYS-FARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKL 358 (547)
Q Consensus 280 P~~s-~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aierWD~~~~~~lPeymk~~f~al~~~~~ei~~~~~~~~~~ 358 (547)
|..+ ..++.++=..++++++||.++.. .+++..|-.-+-. .. . + |. ++...+.+.+.++. +.=++
T Consensus 79 ~~~~~evqv~IaiyT~yvi~iDD~~~~~--~~~l~~F~~~l~~--Gq-~-Q-~~---p~L~~~~~~L~~~~----~~fgp 144 (376)
T PF06330_consen 79 PHLPKEVQVAIAIYTTYVIIIDDSSQEP--SDDLRTFHQRLIL--GQ-P-Q-KH---PLLDGFASLLREMW----RHFGP 144 (376)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTT--S-S--HHHHTTHHHHHHH--T------SS---HHHHHHHHHHHHHH----TTS-H
T ss_pred CCCCHHHHHHHHHHHHHHHhcccccccc--cHHHHHHHHHHhc--CC-C-C-CC---HHHHHHHHHHHHHH----HHcch
Confidence 4443 55668889999999999998755 3566666543322 11 1 1 11 33444444444443 22234
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcchhH---HHHH
Q 039366 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPR---FIRA 435 (547)
Q Consensus 359 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~---l~~~ 435 (547)
.+-.-+.++--+++.+..-|++.. +-.|.-..|-..-+.=+|+..+.+...+ |++.+.-...+.. .+--
T Consensus 145 f~anmI~~STLdFi~g~~LE~~~f--~~~p~A~~FP~fLR~ktGlsEaYA~FiF------Pk~~fpe~~~~~~y~~AIpd 216 (376)
T PF06330_consen 145 FCANMIVKSTLDFINGCWLEQKNF--HGSPGAPDFPDFLRRKTGLSEAYAFFIF------PKALFPEVEYFIQYTPAIPD 216 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT------TT-TTHHHHHHHHHH-HHHHHHHT--------TTTS-TTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccC--CCCCCCccccHHHHhccCcchhheeeec------ccccCChHHHHHHHHHHHHH
Confidence 566777888899999999998643 2234433444444444555554443222 3332221122333 3334
Q ss_pred HHHHHHHccCCcChHHhhh-cCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 436 SSVVCRLMDDMASHEFEQS-RGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 436 ~~~i~RL~NDI~S~kkE~~-rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
.....-++|||.||=||.- .|+.+|.|.-+-.-+|+|.-+|...+.+..-.+-+++.+
T Consensus 217 l~~fi~~~NDILSFYKE~l~a~E~~NyI~n~A~~~g~S~~eaL~~l~~eti~a~~rv~~ 275 (376)
T PF06330_consen 217 LMRFINYVNDILSFYKEELVAGETGNYIHNRARVHGVSILEALRELTDETIEAVERVRR 275 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHhhcccccccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455569999999999977 789999998888778999999999886655556555444
No 11
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=97.52 E-value=0.0015 Score=67.75 Aligned_cols=215 Identities=13% Similarity=0.074 Sum_probs=123.4
Q ss_pred hhhhhHHHHHhhhhcc-cc-CCCchhHHH-HHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhhccchhhccCChhHHHH
Q 039366 261 ISRDRIAECYFWILGV-YF-EPQYSFARR-ILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLC 337 (547)
Q Consensus 261 l~Rdr~ve~yfw~~~~-~f-eP~~s~~Ri-~~aK~~~li~viDD~fD~ygt~eEl~~ft~aierWD~~~~~~lPeymk~~ 337 (547)
++-.|+.-+-=-++++ .| =+..|..=+ .++-..+.++++||.-|... +.+..|.+-+.. . ....-| +
T Consensus 58 ~~p~ri~~~~~T~v~~~~Y~w~~~skev~~~isi~~tY~~~lDD~~~e~~--~~m~~f~~dL~~--G-~~qkhP-----~ 127 (357)
T cd00686 58 VDPKRLQASLQTIVGMVVYSWAKVSKECMADLSIHYTYTLVLDDSKDDPY--PTMVNYFDDLQA--G-REQAHP-----W 127 (357)
T ss_pred CCHHHHHHHHHHhhceEEeeccCCCHHHHHHHHHHHheeeEecccccccc--hHHHHHHHHHhc--C-CCCCCc-----H
Confidence 5533444344444555 33 223454433 66677788899999976543 355555544332 1 111112 1
Q ss_pred HHHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCC
Q 039366 338 YRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDI 417 (547)
Q Consensus 338 f~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~ 417 (547)
...+.+.+..+-+.. |+++-.-+.++--+++.+.+-|... .+.-|.-.+|-...+.=+|.+-+.++. .
T Consensus 128 l~~v~~~l~~~lr~f----GpF~s~~IikSTLdFv~g~~iEq~n--f~~~p~A~~fP~ylR~ksGl~E~yA~F------i 195 (357)
T cd00686 128 WALVNEHFPNVLRHF----GPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGAS------L 195 (357)
T ss_pred HHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHhhhc--cCCCCCCcccchHHHhccCCcceeEEE------e
Confidence 222222222222111 3344555678888999999999763 344676666666666666655443322 2
Q ss_pred cchhHHhhhcchhHHHHHHHH---HHHHccCCcChHHhhhc-CCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 418 VTKESFEWLFSNPRFIRASSV---VCRLMDDMASHEFEQSR-GHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 418 l~~ev~e~~~~~~~l~~~~~~---i~RL~NDI~S~kkE~~r-G~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
.|++.+.-..-+..+..+... ..-++|||.||=||--. ++-.|.|.-|.+.+|+|..+|.+.+.+-.-.+-+++.+
T Consensus 196 FPk~~FpE~~~~~qi~~AIp~~~~~i~~~NDILSFYKEe~~~~E~~n~V~Nya~~~GiS~~eAL~~lt~dTv~~s~rv~~ 275 (357)
T cd00686 196 WPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVA 275 (357)
T ss_pred cchhhCchHhhHHHhhHHHHHHHHHHHhhhhhhheehhhcccccccchHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 355544332333443334443 44589999999999854 55678888888889999999999876655555555544
Q ss_pred hccCC
Q 039366 494 DCLRP 498 (547)
Q Consensus 494 e~l~~ 498 (547)
.|.+
T Consensus 276 -VLse 279 (357)
T cd00686 276 -VFSD 279 (357)
T ss_pred -HhcC
Confidence 3443
No 12
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=92.21 E-value=5.2 Score=40.34 Aligned_cols=194 Identities=18% Similarity=0.199 Sum_probs=102.9
Q ss_pred HHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHH----HHHHHHHHhhccchhhccCChhHHHHHHHHHHH
Q 039366 269 CYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEE----LELFTSAIKRWDISAIDQLPEYMKLCYRALLDV 344 (547)
Q Consensus 269 ~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eE----l~~ft~aierWD~~~~~~lPeymk~~f~al~~~ 344 (547)
+|++++-.. | ...|..+.-+-.|.-.+||+-|......+ |+-+-+++...-.+..+..+....++..++..+
T Consensus 7 sf~~a~~~l--P--~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~~~ 82 (267)
T PF00494_consen 7 SFYLASLLL--P--KEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALADL 82 (267)
T ss_dssp HHHHHHTTS-----HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHHHH
T ss_pred cHHHHHHHC--C--HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHHHH
Confidence 455444433 4 45666667788899999999997764332 333444444332111112333445666666654
Q ss_pred HHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHh
Q 039366 345 YSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFE 424 (547)
Q Consensus 345 ~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e 424 (547)
.... ..-.+.+.+++.++.+. .....++|++|+......+.|....+++..++..... .+..+
T Consensus 83 ~~~~-------------~l~~~~l~~li~~~~~d---l~~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~~~~-~~~~~ 145 (267)
T PF00494_consen 83 VRRY-------------GLPREPLLELIDGMEMD---LEFTPYETFADLERYCYYVAGSVGLLLLQLLGAHDPD-EAARD 145 (267)
T ss_dssp HCCS-------------HHHHHHHHHHHHHHHHC---TT-S--SSHHHHHHHHHHHTHHHHHHHHHHHHSSTSH-HHHHH
T ss_pred HHHH-------------hhhHHHHHHHHHHhccc---ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccch-hhHHH
Confidence 4321 12345566777777633 3335578999999999999888777776666553211 12332
Q ss_pred hhcchhHHHHHHHHHHHHccCCcChHHh-hhcCC--CcchhhHHHhhCCCCHHHHHHH----------HHHHHHHHHHHH
Q 039366 425 WLFSNPRFIRASSVVCRLMDDMASHEFE-QSRGH--VASSVECYMKQHGATEEEACNE----------FRKQVSNAWKDI 491 (547)
Q Consensus 425 ~~~~~~~l~~~~~~i~RL~NDI~S~kkE-~~rG~--~~n~V~cyMke~g~S~EeA~~~----------i~~~I~~~wk~l 491 (547)
. ....+..+-+.|=+...... ..+|. ++.- .|.++|+|.++-... +..+++.+...+
T Consensus 146 ~-------a~~lG~alql~nilRd~~~D~~~~gR~ylP~d---~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l 215 (267)
T PF00494_consen 146 A-------ARALGRALQLTNILRDIPEDALRRGRIYLPLD---DLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHL 215 (267)
T ss_dssp H-------HHHHHHHHHHHHHHHTHHHH-HHTT---S-HH---HHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHHHHHhHHHHHhcccccCCch---hHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 2 23333333333333334455 45564 3322 467789887765332 455555555554
Q ss_pred hh
Q 039366 492 NE 493 (547)
Q Consensus 492 n~ 493 (547)
.+
T Consensus 216 ~~ 217 (267)
T PF00494_consen 216 DE 217 (267)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 13
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=90.10 E-value=5.2 Score=39.32 Aligned_cols=118 Identities=15% Similarity=0.192 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhc-ccchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHH
Q 039366 360 RLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALV-TSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSV 438 (547)
Q Consensus 360 ~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~i-S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 438 (547)
....+.+....++.|...+..|... ..||.++|++.-.. |+++....+..-...+. -+++..+ ...++.+..+.
T Consensus 86 ~~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~lG~ 160 (236)
T cd00867 86 ALELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRYKTAGLVGLLCLLGAGLSG-ADDEQAE---ALKDYGRALGL 160 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC-cCHHHHH---HHHHHHHHHHH
Confidence 4566778889999999999988654 57899999999998 66655443333222222 2233332 33567788889
Q ss_pred HHHHccCCcChHHhh----------hcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 439 VCRLMDDMASHEFEQ----------SRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 439 i~RL~NDI~S~kkE~----------~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
..-+.||+..+.... ++|.. +...+++ .+.+.+.++.+++.+..
T Consensus 161 a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~-tlp~~~~----------~~~~~~~~~~~~~~~~~ 214 (236)
T cd00867 161 AFQLTDDLLDVFGDAEELGKVGSDLREGRI-TLPVILA----------RERAAEYAEEAYAALEA 214 (236)
T ss_pred HHHHHHHhccccCChHHHCccHHHHHcCCc-hHHHHHH----------HHHHHHHHHHHHHHHHh
Confidence 999999998876544 45544 4544444 55566666666666544
No 14
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=89.93 E-value=24 Score=35.76 Aligned_cols=204 Identities=14% Similarity=0.167 Sum_probs=103.0
Q ss_pred HHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhhccc--h-hhccCChhHHHHHHHHHHHH
Q 039366 269 CYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDI--S-AIDQLPEYMKLCYRALLDVY 345 (547)
Q Consensus 269 ~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aierWD~--~-~~~~lPeymk~~f~al~~~~ 345 (547)
+|++++-... ...|..+.-+-.+.-.+||+-|..++.++-+ ..++.|.. . ....-|. .++..+|..++
T Consensus 7 sF~~a~~~lp----~~~R~~~~alYaf~r~~d~i~D~~~~~~~~~---~~L~~w~~~l~~~~~g~~~--~pv~~al~~~~ 77 (266)
T TIGR03465 7 SFYYGMRLLP----PERRRAMTALYAFCREVDDIVDEDSDPEVAQ---AKLAWWRAEIDRLYAGAPS--HPVARALADPA 77 (266)
T ss_pred cHHHHHHHCC----HHHHHHHHHHHHHHHHHHhhhcCCCCchHHH---HHHHHHHHHHHHHhCCCCC--ChHHHHHHHHH
Confidence 5665555443 3456666677788888999999855443322 22333421 1 1111122 25566666554
Q ss_pred HHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhh
Q 039366 346 SEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEW 425 (547)
Q Consensus 346 ~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~ 425 (547)
... +. . ++.+.+++.++.+... ....+|++|+......+.|.-..+++-.++.. ++.....
T Consensus 78 ~~~--------~l-~----~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~vg~l~~~llg~~---~~~~~~~ 138 (266)
T TIGR03465 78 RRF--------DL-P----QEDFLEVIDGMEMDLE---QTRYPDFAELDLYCDRVAGAVGRLSARIFGAT---DARTLEY 138 (266)
T ss_pred HHc--------CC-C----HHHHHHHHHHHHHHcC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCC---ChhHHHH
Confidence 432 11 1 2446667777664433 34578999988888877776666555444321 2222222
Q ss_pred hcchhHHHHHHHHHHHHccCCcChHHhhhcCCC--cchhhHHHhhCCCCHH---------HHHHHHHHHHHHHHHHHhhh
Q 039366 426 LFSNPRFIRASSVVCRLMDDMASHEFEQSRGHV--ASSVECYMKQHGATEE---------EACNEFRKQVSNAWKDINED 494 (547)
Q Consensus 426 ~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~--~n~V~cyMke~g~S~E---------eA~~~i~~~I~~~wk~ln~e 494 (547)
.. . +-.+.-++.++-|+. ...++|.+ +- =-|.++|+|.+ ....-+..+++.+..-+.+.
T Consensus 139 a~---~-lG~AlqltnilRdv~---eD~~~gR~ylP~---~~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a 208 (266)
T TIGR03465 139 AH---H-LGRALQLTNILRDVG---EDARRGRIYLPA---EELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEA 208 (266)
T ss_pred HH---H-HHHHHHHHHHHHHhH---HHHhCCCeecCH---HHHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1 112222333444553 33456653 21 13567888766 33445566666666555543
Q ss_pred ccCCCCCCHHHHHHHH
Q 039366 495 CLRPTVLPMPLLMRIL 510 (547)
Q Consensus 495 ~l~~~~~p~~~~~~~l 510 (547)
.--...+|......++
T Consensus 209 ~~~~~~~p~~~~~~~~ 224 (266)
T TIGR03465 209 DALLPACDRRAQRAAR 224 (266)
T ss_pred HHhhhhCCHhhhHHHH
Confidence 2112346754443333
No 15
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=87.50 E-value=25 Score=35.48 Aligned_cols=208 Identities=15% Similarity=0.207 Sum_probs=103.3
Q ss_pred HHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCH-H----HHHHHHHHHhhccchhhccCChhHHHHHHHHHH
Q 039366 269 CYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKI-E----ELELFTSAIKRWDISAIDQLPEYMKLCYRALLD 343 (547)
Q Consensus 269 ~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~-e----El~~ft~aierWD~~~~~~lPeymk~~f~al~~ 343 (547)
+|+++.-.. | ...|..+.-+-.|.-.+||+-|..... . .|.-+.++++.-.. +.-|. .++..+|..
T Consensus 13 sf~~a~~~l--p--~~~R~~~~alYaf~r~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~~~~---~~~~~--~pv~~al~~ 83 (265)
T cd00683 13 SFYLASRLL--P--PELRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDAAYW---GGAPT--HPVLRALAD 83 (265)
T ss_pred cHHHHHHhC--C--HHHHHHHHHHHHHHHHHHhhhhCCCCCchhHHHHHHHHHHHHHHHHc---CCCCC--ChHHHHHHH
Confidence 555555443 3 345666667778888899999976532 2 23333333332111 01122 256677766
Q ss_pred HHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHH
Q 039366 344 VYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESF 423 (547)
Q Consensus 344 ~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~ 423 (547)
+..+. +. -++.+.+++.++..... ....||++|.......+.|+-..+++..++.+ -+++..
T Consensus 84 ~~~~~--------~l-----~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~~~~--~~~~~~ 145 (265)
T cd00683 84 LARRY--------GI-----PREPFRDLLAGMAMDLD---KRRYETLDELDEYCYYVAGVVGLMLLRVFGAS--SDEAAL 145 (265)
T ss_pred HHHHc--------CC-----CHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCC--CChHHH
Confidence 55421 11 13456677777764444 45678998888887777776655555444331 122222
Q ss_pred hhhcchhHHHHHHHHHHHHccCCcChHHhhhcCC--CcchhhHHHhhCCCCHHHH---------HHHHHHHHHHHHHHHh
Q 039366 424 EWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGH--VASSVECYMKQHGATEEEA---------CNEFRKQVSNAWKDIN 492 (547)
Q Consensus 424 e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~--~~n~V~cyMke~g~S~EeA---------~~~i~~~I~~~wk~ln 492 (547)
......-.-++ ++.++-|+. ...++|- ++.- -|.++|+|.++- ..-+..+++.+.+-+.
T Consensus 146 ~~A~~lG~Alq----ltnilRdv~---eD~~~gR~YlP~d---~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 215 (265)
T cd00683 146 ERARALGLALQ----LTNILRDVG---EDARRGRIYLPRE---ELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYR 215 (265)
T ss_pred HHHHHHHHHHH----HHHHHHHHH---HHHccCCCcCCHH---HHHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22111111122 233334443 3345554 2322 256788877552 2444555665555544
Q ss_pred hhccCCCCCCHHHHHHHHHHh
Q 039366 493 EDCLRPTVLPMPLLMRILNLT 513 (547)
Q Consensus 493 ~e~l~~~~~p~~~~~~~lN~a 513 (547)
...-....+|....-.++-++
T Consensus 216 ~a~~~~~~lp~~~~~~~~~~~ 236 (265)
T cd00683 216 EALAGLAALPRRSRFCVRAAA 236 (265)
T ss_pred HHHHhHHhCCHhhHHHHHHHH
Confidence 433222346754444444343
No 16
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=86.41 E-value=19 Score=36.35 Aligned_cols=121 Identities=14% Similarity=0.094 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHH
Q 039366 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSV 438 (547)
Q Consensus 359 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 438 (547)
.....+.+.+...+.+-..+..|... ..||.++|++....-+|.....+....++--..+++..+ ...++-+..+.
T Consensus 108 ~~~~~~~~~~~~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~~~~~~~~---~l~~~g~~lG~ 183 (259)
T cd00685 108 RALELFSEAILELVEGQLLDLLSEYD-TDVTEEEYLRIIRLKTAALFAAAPLLGALLAGADEEEAE---ALKRFGRNLGL 183 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHHH
Confidence 35667778888899998889888654 579999999998877776654333222210112344333 24577788888
Q ss_pred HHHHccCCcChHHhh-----------hcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 439 VCRLMDDMASHEFEQ-----------SRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 439 i~RL~NDI~S~kkE~-----------~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
..-+.||+..+.... ..|.. |.+.+|.. .+.+...++++++.+..
T Consensus 184 afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~-T~~~~~~l---------~~~~~~~~~~a~~~l~~ 239 (259)
T cd00685 184 AFQIQDDILDLFGDPETLGKPVGSDLREGKC-TLPVLLAL---------RELAREYEEKALEALKA 239 (259)
T ss_pred HHHHHHHhhcccCChHHHCCCcchHHHcCCc-hHHHHHHH---------HHHHHHHHHHHHHHHHc
Confidence 899999987664322 22332 44444443 45566666777766554
No 17
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=86.07 E-value=42 Score=34.07 Aligned_cols=122 Identities=15% Similarity=0.090 Sum_probs=68.3
Q ss_pred HHHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhccc-CCHHHHHHHHHHHhhccc---hhhccCChhHHHHHHHHHH
Q 039366 268 ECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVY-GKIEELELFTSAIKRWDI---SAIDQLPEYMKLCYRALLD 343 (547)
Q Consensus 268 e~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~y-gt~eEl~~ft~aierWD~---~~~~~lPeymk~~f~al~~ 343 (547)
++|+|+.-... ...|..+.-+-.|.=++||+-|.. ++.++-. ..++.|.. +....-|. .++..+|..
T Consensus 6 ~sf~~a~~~lp----~~~R~~~~alYAf~R~~Ddi~D~~~~~~~~~~---~~L~~wr~~l~~~~~g~~~--~pv~~aL~~ 76 (266)
T TIGR03464 6 ENFPVASLLLP----ARLRAPIHAVYAFARTADDIADEGDGSAEERL---ALLDDFRAELDAIYSGEPA--APVFVALAR 76 (266)
T ss_pred CcHHHHHHhCC----HHHHHHHHHHHHHHHHHHHhccCCCCChHHHH---HHHHHHHHHHHHHhCCCCC--ChHHHHHHH
Confidence 46666665554 345555566777788899999975 4444321 22333421 11111121 256677776
Q ss_pred HHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhc
Q 039366 344 VYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGM 414 (547)
Q Consensus 344 ~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~ 414 (547)
++.+. +.. ++.+.+++.++... ......+|++|.......+.|+-..+++..++.
T Consensus 77 ~~~~~--------~l~-----~~~~~~li~~~~~D---l~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~g~ 131 (266)
T TIGR03464 77 TVQRH--------GLP-----IEPFLDLLDAFRQD---VVVTRYATWAELLDYCRYSANPVGRLVLDLYGA 131 (266)
T ss_pred HHHHc--------CCC-----hHHHHHHHHHHHHh---ccCCCCCCHHHHHHHHHHhHHHHHHHHHHHcCC
Confidence 66542 111 23445556665422 234456799998888888888776666555543
No 18
>PLN02890 geranyl diphosphate synthase
Probab=80.73 E-value=44 Score=36.55 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=60.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHH
Q 039366 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSV 438 (547)
Q Consensus 359 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 438 (547)
.++..+.++...++.+-+.+..|... ..+|+++|++.-..-+|..+..++..-++=-..+++..+.+ .++-+..+.
T Consensus 227 ~~~~~~s~a~~~l~~Gq~ld~~~~~~-~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l---~~fG~~lGl 302 (422)
T PLN02890 227 EVVSLLATAVEHLVTGETMQITSSRE-QRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLA---FEYGRNLGL 302 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHH---HHHHHHHHH
Confidence 45778888999999999999988643 45899999987665555554333222111112355555443 467788888
Q ss_pred HHHHccCCcChHH
Q 039366 439 VCRLMDDMASHEF 451 (547)
Q Consensus 439 i~RL~NDI~S~kk 451 (547)
..-+.||+..+.-
T Consensus 303 AFQI~DDiLD~~g 315 (422)
T PLN02890 303 AFQLIDDVLDFTG 315 (422)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999987754
No 19
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=80.51 E-value=75 Score=33.36 Aligned_cols=88 Identities=7% Similarity=0.065 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHH
Q 039366 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSV 438 (547)
Q Consensus 359 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 438 (547)
.....+.+....++.+-+.+..|... ..+|.++|++.-..=+|..+..++..-++--..+++..+. ..++-...+.
T Consensus 133 ~~~~~~~~~~~~~~~Gq~~~~~~~~~-~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~---l~~~G~~lG~ 208 (322)
T TIGR02749 133 EVVKLISKVITDFAEGEIKQGLNQFD-SDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVAND---LYEYGKHLGL 208 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHH---HHHHHHHHHH
Confidence 35667778888899998888776543 3479999999766655555433321111111245554444 3567788899
Q ss_pred HHHHccCCcChH
Q 039366 439 VCRLMDDMASHE 450 (547)
Q Consensus 439 i~RL~NDI~S~k 450 (547)
..-+.||+..+.
T Consensus 209 aFQi~DDild~~ 220 (322)
T TIGR02749 209 AFQVVDDILDFT 220 (322)
T ss_pred HHHHHHHhccCC
Confidence 999999998765
No 20
>PLN02857 octaprenyl-diphosphate synthase
Probab=80.36 E-value=33 Score=37.44 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=58.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHH
Q 039366 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSV 438 (547)
Q Consensus 359 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 438 (547)
.....+.+...+++.+-+.+..|.. +..+|.++|++.-..=+|..+..++..-++=-..+++..+. ..++-+..+.
T Consensus 227 ~~~~~~s~~~~~l~~Gei~q~~~~~-~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~---l~~fG~~LGi 302 (416)
T PLN02857 227 EVIKLISQVIKDFASGEIKQASSLF-DCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQ---MYEYGKNLGL 302 (416)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhccc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 3566777888888888887877764 34579999999776655555433322111111245555443 3567788888
Q ss_pred HHHHccCCcChH
Q 039366 439 VCRLMDDMASHE 450 (547)
Q Consensus 439 i~RL~NDI~S~k 450 (547)
..-+.||+..+.
T Consensus 303 AFQI~DDiLD~~ 314 (416)
T PLN02857 303 AFQVVDDILDFT 314 (416)
T ss_pred HHHHHHHHHhhc
Confidence 999999998775
No 21
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=74.17 E-value=1.2e+02 Score=32.00 Aligned_cols=116 Identities=18% Similarity=0.189 Sum_probs=66.8
Q ss_pred HHHHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHH
Q 039366 408 TTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFRKQVSNA 487 (547)
Q Consensus 408 ~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~ 487 (547)
++.-++..+.++++..+.+.. .-.=.++-+-.|++=....+.+...|+. |.|..|- +.+++.+.+.-.++++
T Consensus 196 ~L~a~A~~p~~t~~~a~~i~~--aYFPwI~gLHILLDy~IDq~EDr~~GdL-NFv~YY~-----~~~~~~~Rl~~f~~~A 267 (330)
T PF10776_consen 196 ALFAYAADPDLTPEDAEKIKD--AYFPWICGLHILLDYFIDQEEDREGGDL-NFVFYYP-----DEEEMEERLKYFVEKA 267 (330)
T ss_pred HHHHHHcCCCCCHHHHHHHHH--cccHHHHHHHHHHHHHhhhHhHhcCCCc-eeeeeCC-----CHHHHHHHHHHHHHHH
Confidence 334455667788887776532 1122334444555545555555566665 9998654 7899999999999988
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHhhhhhceeccCCCCCCCchhHHHHHHhhh
Q 039366 488 WKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLL 541 (547)
Q Consensus 488 wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll 541 (547)
-+...+ +|.+--.+.++-+ +--||-.++.=..+ ..++..-+.|+
T Consensus 268 ~~~~~~-------Lp~~~fHr~iv~G--Lla~YLSD~K~~~~-~~~~~~ak~Ll 311 (330)
T PF10776_consen 268 LEQASR-------LPYPKFHRMIVRG--LLAMYLSDPKVRSQ-PNVRPVAKRLL 311 (330)
T ss_pred HHHHHh-------CCCchHHHHHHHH--HHHHHhCCHhhccc-hhhHHHHHHHH
Confidence 877554 5554333433333 33478766543322 22344444443
No 22
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=68.75 E-value=1.2e+02 Score=31.65 Aligned_cols=86 Identities=9% Similarity=0.054 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhc-CCCcchhHHhhhcchhHHHHHHHH
Q 039366 360 RLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGM-GDIVTKESFEWLFSNPRFIRASSV 438 (547)
Q Consensus 360 ~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~-g~~l~~ev~e~~~~~~~l~~~~~~ 438 (547)
....+.++....+.+-..+..|.. +..+|.++|++.-..-+|..+..++ ..|. =-..+++..+. ..++-+..+.
T Consensus 130 ~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~Y~~~i~~KTa~L~~~~~-~~ga~~ag~~~~~~~~---l~~~g~~lG~ 204 (319)
T TIGR02748 130 AHQILSHTIVEVCRGEIEQIKDKY-NFDQNLRTYLRRIKRKTALLIAASC-QLGAIASGANEAIVKK---LYWFGYYVGM 204 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 466778888889999888888753 3457999999887776665543332 2221 00224444433 3566778888
Q ss_pred HHHHccCCcChH
Q 039366 439 VCRLMDDMASHE 450 (547)
Q Consensus 439 i~RL~NDI~S~k 450 (547)
..-+.||+..+.
T Consensus 205 aFQI~DDilD~~ 216 (319)
T TIGR02748 205 SYQITDDILDFV 216 (319)
T ss_pred HHHHHHHHHHcc
Confidence 999999997664
No 23
>PLN02632 phytoene synthase
Probab=68.08 E-value=1.7e+02 Score=30.96 Aligned_cols=218 Identities=14% Similarity=0.193 Sum_probs=106.6
Q ss_pred hchHHHHHHHHHHhhhhhhhhHHHHHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhhccc
Q 039366 245 LDFNKLQKLHQKELGDISRDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDI 324 (547)
Q Consensus 245 ldFn~~Q~~hq~EL~~l~Rdr~ve~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aierWD~ 324 (547)
-+|..|+.+-+ .-+| +|+++.-... | ..|..+.-+-.|.-.+||+-|.......-. ..+..|..
T Consensus 47 ~a~~~c~~i~r----~~s~-----sFyla~~lLP-~---~~R~ai~alYAf~R~~DdI~D~~~~~~~~~---~~L~~w~~ 110 (334)
T PLN02632 47 EAYDRCGEVCA----EYAK-----TFYLGTLLMT-P---ERRKAIWAIYVWCRRTDELVDGPNASHITP---AALDRWEA 110 (334)
T ss_pred HHHHHHHHHHh----hcCc-----hHHHHHHhCC-H---HHHHHHHHHHHHHHHHhHHhcCCCCChhhH---HHHHHHHH
Confidence 55677764432 2222 5555554443 2 345556677788889999999654322111 11334421
Q ss_pred ---hhhccCChhHHHHHHHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhccc
Q 039366 325 ---SAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTS 401 (547)
Q Consensus 325 ---~~~~~lPeymk~~f~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~ 401 (547)
+..+.-|. .++..+|.+++.+.. . . ++.+.+++.++..... ....+|++|+......+.
T Consensus 111 ~l~~~~~g~~~--~pv~~aL~~~~~~~~--------L-~----~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Ycy~vA 172 (334)
T PLN02632 111 RLEDLFDGRPY--DMLDAALADTVSKFP--------L-D----IQPFRDMIEGMRMDLV---KSRYENFDELYLYCYYVA 172 (334)
T ss_pred HHHHHhCCCCC--ChHHHHHHHHHHHCC--------C-C----hHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhh
Confidence 11111122 245677776665431 1 1 2345666777664332 345679998888888777
Q ss_pred chhHHHHHHHHhcCCCcc---hhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCC--cchhhHHHhhCCCCHHHH
Q 039366 402 AYPMLSTTSFVGMGDIVT---KESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHV--ASSVECYMKQHGATEEEA 476 (547)
Q Consensus 402 g~~~~~~~~~~~~g~~l~---~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~--~n~V~cyMke~g~S~EeA 476 (547)
|+--.+++..++.....+ +++..... .+ -.+-.+..++.|+. ....+|-+ +- =.|.++|+|.++-
T Consensus 173 gtVG~l~l~vlg~~~~~~~~~~~~~~~A~---~l-G~AlQltNILRDv~---eD~~~GRvYLP~---e~L~~~Gv~~edl 242 (334)
T PLN02632 173 GTVGLMSVPVMGIAPESKASTESVYNAAL---AL-GIANQLTNILRDVG---EDARRGRVYLPQ---DELAQFGLTDEDI 242 (334)
T ss_pred HHHHHHHHHHhCCCCccccchHHHHHHHH---HH-HHHHHHHHHHHHHH---HHHhCCceeCCH---HHHHHcCCCHHHH
Confidence 766665555444322111 11111110 11 11222333444553 44566653 21 1257789988772
Q ss_pred ---------HHHHHHHHHHHHHHHhhhccCCCCCCHHHH
Q 039366 477 ---------CNEFRKQVSNAWKDINEDCLRPTVLPMPLL 506 (547)
Q Consensus 477 ---------~~~i~~~I~~~wk~ln~e~l~~~~~p~~~~ 506 (547)
..-+..+++.+..-+.+..--...+|..+.
T Consensus 243 ~~~~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~~lp~~~r 281 (334)
T PLN02632 243 FAGKVTDKWRAFMKFQIKRARMYFAEAEEGVSELDPASR 281 (334)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHhH
Confidence 233445555555444332211134676544
No 24
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=67.58 E-value=1.1e+02 Score=32.05 Aligned_cols=107 Identities=12% Similarity=0.140 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHH
Q 039366 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSV 438 (547)
Q Consensus 359 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 438 (547)
.....+.+.+..++.+-+.+-.|.... +|.++|+.+-..=+|..+..+...-++--..+++..+.+ ...-+..+.
T Consensus 134 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~--~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l---~~~g~~lGl 208 (322)
T COG0142 134 EAIKALAEAINGLCGGQALDLAFENKP--VTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEAL---EDYGRNLGL 208 (322)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHhhH
Confidence 356778888999999999888886655 999999998877666665543322222112235555543 567788899
Q ss_pred HHHHccCCcChHHhh-hcCCC---------cchhhHHHhhCC
Q 039366 439 VCRLMDDMASHEFEQ-SRGHV---------ASSVECYMKQHG 470 (547)
Q Consensus 439 i~RL~NDI~S~kkE~-~rG~~---------~n~V~cyMke~g 470 (547)
.+-+.||+..+.-+. .-|+. .+++.+|.-+.+
T Consensus 209 aFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~ 250 (322)
T COG0142 209 AFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKA 250 (322)
T ss_pred HHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcC
Confidence 999999998777542 22332 466667766654
No 25
>CHL00151 preA prenyl transferase; Reviewed
Probab=57.68 E-value=2.5e+02 Score=29.44 Aligned_cols=86 Identities=6% Similarity=0.044 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHHhhhcchhHHHHHHH
Q 039366 360 RLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESFEWLFSNPRFIRASS 437 (547)
Q Consensus 360 ~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~~ 437 (547)
....+.+....++.+-+.+..|.. ..-+|.++|+..-..=+|..+..++.. ...| .+++..+. ..++-+..+
T Consensus 135 ~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~G~~lG 208 (323)
T CHL00151 135 VVKLISKVITDFAEGEIRQGLVQF-DTTLSILNYIEKSFYKTASLIAASCKAAALLSD--ADEKDHND---FYLYGKHLG 208 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 456777888888888877776643 334799999997554444444332221 2223 34444433 356778889
Q ss_pred HHHHHccCCcChHH
Q 039366 438 VVCRLMDDMASHEF 451 (547)
Q Consensus 438 ~i~RL~NDI~S~kk 451 (547)
...-+.||+..+.-
T Consensus 209 ~aFQi~DDilD~~~ 222 (323)
T CHL00151 209 LAFQIIDDVLDITS 222 (323)
T ss_pred HHHHHHHHHhhccc
Confidence 99999999987653
No 26
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=57.34 E-value=8.4 Score=36.24 Aligned_cols=30 Identities=40% Similarity=0.573 Sum_probs=25.8
Q ss_pred hcCCCcchhhHHHhhC-CCCHHHHHHHHHHH
Q 039366 454 SRGHVASSVECYMKQH-GATEEEACNEFRKQ 483 (547)
Q Consensus 454 ~rG~~~n~V~cyMke~-g~S~EeA~~~i~~~ 483 (547)
.||..+..|.||+-++ |.|.++|.++++++
T Consensus 119 GRtRSaTvV~cYLmq~~~wtpe~A~~~vr~i 149 (183)
T KOG1719|consen 119 GRTRSATVVACYLMQHKNWTPEAAVEHVRKI 149 (183)
T ss_pred CCccchhhhhhhhhhhcCCCHHHHHHHHHhc
Confidence 4677889999998775 99999999999873
No 27
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=50.18 E-value=3.3e+02 Score=28.61 Aligned_cols=89 Identities=17% Similarity=0.092 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHH
Q 039366 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSV 438 (547)
Q Consensus 359 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 438 (547)
.....+.++...++.+-..+..|... .-+|.++|+.....-+|..+..++..-++=-..+++..+. ...+-+..+.
T Consensus 130 ~~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~s~~~y~~~i~~KTa~lf~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~ 205 (323)
T PRK10888 130 KVLEVMSEAVNVIAEGEVLQLMNVND-PDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKG---LQDYGRYLGT 205 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 34667788888889988888877543 3579999999877766665443322111101234444433 3567788888
Q ss_pred HHHHccCCcChHH
Q 039366 439 VCRLMDDMASHEF 451 (547)
Q Consensus 439 i~RL~NDI~S~kk 451 (547)
..-+.||+..+..
T Consensus 206 aFQi~DD~ld~~~ 218 (323)
T PRK10888 206 AFQLIDDLLDYSA 218 (323)
T ss_pred HHHHHHHhhcccC
Confidence 8999999987753
No 28
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=47.95 E-value=15 Score=35.67 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=30.7
Q ss_pred HHHHccCCcChHHhhhcC-CCcchhhHHHhhCCCCHHHHHHHHHHHH
Q 039366 439 VCRLMDDMASHEFEQSRG-HVASSVECYMKQHGATEEEACNEFRKQV 484 (547)
Q Consensus 439 i~RL~NDI~S~kkE~~rG-~~~n~V~cyMke~g~S~EeA~~~i~~~I 484 (547)
.-.|--++..+|+..+.- .+.-+=.+.|+.+|+|++||.++++++-
T Consensus 127 ~~~L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~A 173 (194)
T COG3707 127 RRALRRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRTA 173 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344445555556554322 2334445799999999999999999853
No 29
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=43.76 E-value=22 Score=27.25 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=21.1
Q ss_pred CcchhhHHHhhCCCCHHHHHHHHHHHHH
Q 039366 458 VASSVECYMKQHGATEEEACNEFRKQVS 485 (547)
Q Consensus 458 ~~n~V~cyMke~g~S~EeA~~~i~~~I~ 485 (547)
+.-++.+.|..+|+|+++|.+.+++.--
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~Am 42 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQAM 42 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 4567788999999999999999987543
No 30
>KOG3730 consensus Acyl-CoA:dihydroxyactetone-phosphate acyltransferase DHAPAT [Lipid transport and metabolism]
Probab=34.30 E-value=2.5e+02 Score=31.23 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=51.4
Q ss_pred CCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhhhhceeccCCCCCCCchhHHHH
Q 039366 457 HVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDF 536 (547)
Q Consensus 457 ~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~ 536 (547)
.+.+.|.-|-+|.|.|.+.-.+++++++++---++|- -.+.-..+-+++++.-+| ||+...+..|.+.
T Consensus 76 ~~~sVi~~~~kes~~s~d~~r~ea~eIlDEmsh~~nl---------~~IR~cg~ai~ki~k~i~---dg~yVNe~~~~~v 143 (685)
T KOG3730|consen 76 KLRSVIEHYAKESGTSLDQMRREAREILDEMSHDRNL---------AIIRWCGIAITKIGKRIC---DGFYVNEASMANV 143 (685)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhcch---------HHHHHHHHHHHHHHHHHh---cceeECHHHHHHH
Confidence 3568889999999999988888888777744333332 133445566777777677 8887766666665
Q ss_pred HHhhhcccc
Q 039366 537 VASLLINPV 545 (547)
Q Consensus 537 i~~ll~~Pi 545 (547)
=+..=-+||
T Consensus 144 r~~~~k~pV 152 (685)
T KOG3730|consen 144 RKDMGKCPV 152 (685)
T ss_pred HHHhccCCE
Confidence 555444443
No 31
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=31.73 E-value=52 Score=31.04 Aligned_cols=34 Identities=32% Similarity=0.616 Sum_probs=25.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHH
Q 039366 464 CYMKQHGATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMP 504 (547)
Q Consensus 464 cyMke~g~S~EeA~~~i~~~I~~~wk~ln~e~l~~~~~p~~ 504 (547)
.-|++.|.|..+ |++.|++.||+ .+.+|+|-|+|
T Consensus 125 ~~~~~~Gks~~e----IR~~ID~kYk~---g~~~pTpTp~P 158 (158)
T PF13798_consen 125 VQMYQEGKSPKE----IRQYIDEKYKE---GYAKPTPTPMP 158 (158)
T ss_pred HHHHHcCCCHHH----HHHHHHHHHHh---CCCCCCCCCCC
Confidence 346677877655 89999999985 57787766653
No 32
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=29.27 E-value=42 Score=22.40 Aligned_cols=17 Identities=41% Similarity=0.778 Sum_probs=13.6
Q ss_pred HHHhhCCCCHHHHHHHH
Q 039366 464 CYMKQHGATEEEACNEF 480 (547)
Q Consensus 464 cyMke~g~S~EeA~~~i 480 (547)
-|.++||+|.||..+.+
T Consensus 9 rYV~eh~ls~ee~~~RL 25 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERL 25 (28)
T ss_pred hhHHhcCCCHHHHHHHH
Confidence 48899999999865554
No 33
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=27.90 E-value=6.2e+02 Score=25.32 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHh-hCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcC
Q 039366 370 NIVKNYFFEAKWC-HQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMAS 448 (547)
Q Consensus 370 ~~~~a~l~EAkW~-~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S 448 (547)
..+.+..-+.... ..+..+|.++|++.-..-+|..+.+++..-++=-..+++..+. ..++.+..+...-+.||+..
T Consensus 114 ~~~~~~~~q~~d~~~~~~~~~~~~y~~i~~~KTg~l~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~afQi~DD~~d 190 (260)
T PF00348_consen 114 ALIEGEIGQALDLANEDKDPTEEEYLEIIRLKTGSLFALACQLGAILAGADEEQIEA---LREFGRHLGIAFQIRDDLLD 190 (260)
T ss_dssp HHHHHHHHHHHHHHTTTSSTSHHHHHHHHHHHTHHHHHHHHHHHHHHTTSGHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hcccceeehhhccccccccccHHHHHHHHhhcchHHHHHHHHHHHHhccchhHHHHH---HHHHHHHHHHHHhhhhhhhh
Confidence 3444444443222 2334789999999988877776544332222111234444443 46778888999999999977
Q ss_pred hHHh
Q 039366 449 HEFE 452 (547)
Q Consensus 449 ~kkE 452 (547)
+...
T Consensus 191 ~~~~ 194 (260)
T PF00348_consen 191 LFGD 194 (260)
T ss_dssp HHSH
T ss_pred ccCc
Confidence 7643
No 34
>PRK10581 geranyltranstransferase; Provisional
Probab=27.46 E-value=6.5e+02 Score=26.09 Aligned_cols=112 Identities=11% Similarity=0.120 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHH--HHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCC
Q 039366 369 KNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTT--SFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDM 446 (547)
Q Consensus 369 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~--~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 446 (547)
..++.+-+.+..|.. ..+|.++|++.-..=+|..+..+. .-+..|.. +++..+. ..++-+..+...-+.||+
T Consensus 152 ~~l~~GQ~ld~~~~~--~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~-~~~~~~~---l~~~g~~lG~aFQI~DDi 225 (299)
T PRK10581 152 AGMCGGQALDLEAEG--KQVPLDALERIHRHKTGALIRAAVRLGALSAGDK-GRRALPV---LDRYAESIGLAFQVQDDI 225 (299)
T ss_pred chhhHhhHHHHhccC--CCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCC-cHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 346677666777753 468999999876544444433222 11222321 2233333 356778889999999999
Q ss_pred cChHHh-----------hhcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 447 ASHEFE-----------QSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 447 ~S~kkE-----------~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
..+... ...|.. |.+.++ ..|.|.+.+.+.++.+.+.+..
T Consensus 226 lD~~g~~~~~GK~~g~Dl~~gk~-T~p~l~------~~e~a~~~a~~~~~~A~~~l~~ 276 (299)
T PRK10581 226 LDVVGDTATLGKRQGADQQLGKS-TYPALL------GLEQARKKARDLIDDARQSLDQ 276 (299)
T ss_pred ccccCChHHHCCCcchhhhcCCC-CHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 887432 122332 454443 2578888888888888877655
No 35
>smart00400 ZnF_CHCC zinc finger.
Probab=26.86 E-value=67 Score=24.33 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=20.9
Q ss_pred CCCcchhhHHHhhCCCCHHHHHHHH
Q 039366 456 GHVASSVECYMKQHGATEEEACNEF 480 (547)
Q Consensus 456 G~~~n~V~cyMke~g~S~EeA~~~i 480 (547)
|.-.+.|..+|+-+|+|-.||++.+
T Consensus 30 g~gGd~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 30 GAGGNVISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred CCCCCHHHHHHHHHCcCHHHHHHHh
Confidence 4456889999998899999998865
No 36
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=25.30 E-value=59 Score=32.22 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=22.7
Q ss_pred cCCCcchhhHHH-hhCCCCHHHHHHHHHH
Q 039366 455 RGHVASSVECYM-KQHGATEEEACNEFRK 482 (547)
Q Consensus 455 rG~~~n~V~cyM-ke~g~S~EeA~~~i~~ 482 (547)
-|.....|.||| +++|+|..||++.++.
T Consensus 158 lGRTG~liAc~lmy~~g~ta~eaI~~lR~ 186 (225)
T KOG1720|consen 158 LGRTGTLIACYLMYEYGMTAGEAIAWLRI 186 (225)
T ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 356678899986 6689999999988865
No 37
>smart00463 SMR Small MutS-related domain.
Probab=24.18 E-value=91 Score=25.26 Aligned_cols=23 Identities=39% Similarity=0.351 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 039366 469 HGATEEEACNEFRKQVSNAWKDI 491 (547)
Q Consensus 469 ~g~S~EeA~~~i~~~I~~~wk~l 491 (547)
||++.++|+..+...++++++.-
T Consensus 7 HG~~~~eA~~~l~~~l~~~~~~~ 29 (80)
T smart00463 7 HGLTVEEALTALDKFLNNARLKG 29 (80)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC
Confidence 79999999999999999988764
No 38
>PF06603 UpxZ: UpxZ family of transcription anti-terminator antagonists; InterPro: IPR010570 This family consists of several hypothetical proteins of unknown function and seems to be specific to Bacteroides species.
Probab=22.06 E-value=95 Score=27.24 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHH
Q 039366 430 PRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATE---EEACNEFRKQVSNAWKDINEDCLRPTVLPMPLL 506 (547)
Q Consensus 430 ~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~---EeA~~~i~~~I~~~wk~ln~e~l~~~~~p~~~~ 506 (547)
..+.++-..+.+.+||+++.+-+-..-+ ||.-.-...-+++|. -|.-++++..++.+|..+.. +|.+++
T Consensus 25 D~~~rLN~ev~~~~~~Ly~~~G~t~Eee-A~lCLaLLmGYnat~yd~geke~~~Q~vL~Rs~~vL~~-------Lp~SlL 96 (106)
T PF06603_consen 25 DDFSRLNKEVYEQSNDLYSQHGSTPEEE-ANLCLALLMGYNATIYDNGEKEEKKQEVLDRSWEVLDK-------LPASLL 96 (106)
T ss_pred HHHHHHhHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHhccchhhhCccHHHHHHHHHHHHHHHHHh-------CCcHHH
Confidence 3567788889999999987633221111 333222222233332 12234678889999977655 677766
Q ss_pred HH
Q 039366 507 MR 508 (547)
Q Consensus 507 ~~ 508 (547)
+.
T Consensus 97 K~ 98 (106)
T PF06603_consen 97 KV 98 (106)
T ss_pred HH
Confidence 65
No 39
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.94 E-value=1.2e+02 Score=30.78 Aligned_cols=60 Identities=23% Similarity=0.446 Sum_probs=41.9
Q ss_pred cccccccccccccccccchhhhhhhhhhhccCCCCchHHHHHHHHhHHHHHHHHhhcCCCChHHHHHHhc
Q 039366 140 FKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAHQISSPLAEQVKHAL 209 (547)
Q Consensus 140 f~~F~d~~g~F~~~l~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~~~~~l~~~V~~aL 209 (547)
|.+. +.+|-|.....-|+||...|-++-- .... +-|=.|..||++||. +.+-++.|++-|
T Consensus 260 yDHV-hp~GAFv~~s~iDmkgcvrllk~q~-p~~~-e~LLnaLRfTTKHlN-------desTpK~ir~ll 319 (321)
T KOG3951|consen 260 YDHV-HPNGAFVSNSSIDMKGCVRLLKLQP-PEQS-ECLLNALRFTTKHLN-------DESTPKSIRHLL 319 (321)
T ss_pred eecc-cccccccccCcCcHHHHHHHHHcCC-chhh-HHHHHHHHHHHhhcC-------CCCChHHHHHHh
Confidence 3444 5788898877889999999988743 2222 467789999999994 333455566554
No 40
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=20.90 E-value=98 Score=25.26 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhh
Q 039366 469 HGATEEEACNEFRKQVSNAWKDINED 494 (547)
Q Consensus 469 ~g~S~EeA~~~i~~~I~~~wk~ln~e 494 (547)
||++.+||+..+.+.++++++.-...
T Consensus 4 HG~~~~eA~~~l~~~l~~~~~~~~~~ 29 (83)
T PF01713_consen 4 HGLTVEEALRALEEFLDEARQRGIRE 29 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTTHSE
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCE
Confidence 79999999999999999998664443
No 41
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=20.23 E-value=96 Score=28.02 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.3
Q ss_pred hhhHHHhhCCCCHHHHHHHHHH
Q 039366 461 SVECYMKQHGATEEEACNEFRK 482 (547)
Q Consensus 461 ~V~cyMke~g~S~EeA~~~i~~ 482 (547)
=|.+.|.|.|+|.|+|++.+..
T Consensus 87 DIkLV~eQa~VsreeA~kAL~e 108 (122)
T COG1308 87 DIKLVMEQAGVSREEAIKALEE 108 (122)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 3678999999999999987743
Done!