Query 039366
Match_columns 547
No_of_seqs 225 out of 899
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 15:11:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 2E-163 5E-168 1332.8 50.2 522 18-547 17-554 (554)
2 3m00_A Aristolochene synthase; 100.0 3E-162 1E-166 1321.7 50.4 521 18-547 12-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 2E-161 8E-166 1317.5 45.0 521 22-546 14-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 4E-156 1E-160 1282.2 49.6 523 23-546 2-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 2E-155 7E-160 1276.2 42.3 525 21-546 4-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 5E-155 2E-159 1276.6 40.2 521 19-546 31-569 (569)
7 3sdr_A Alpha-bisabolene syntha 100.0 3E-139 9E-144 1187.1 42.9 479 69-547 296-817 (817)
8 3p5p_A Taxadiene synthase; cla 100.0 1E-138 3E-143 1175.6 44.8 476 69-547 244-756 (764)
9 3s9v_A Abietadiene synthase, c 100.0 8E-139 3E-143 1179.0 43.4 476 69-546 268-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 2E-104 7E-109 887.4 33.7 440 51-546 220-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 1.1E-47 3.8E-52 398.6 17.0 225 263-495 42-270 (337)
12 1di1_A Aristolochene synthase; 100.0 4.8E-46 1.6E-50 379.9 15.4 218 263-495 38-264 (300)
13 3bny_A Aristolochene synthase; 100.0 2.3E-44 7.9E-49 371.1 15.9 218 263-495 52-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 1.4E-43 4.9E-48 375.0 17.8 226 263-494 82-311 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 1.4E-31 4.9E-36 286.4 13.8 215 273-495 162-390 (433)
16 1yyq_A Trichodiene synthase; t 99.7 1.4E-16 4.8E-21 167.3 13.0 208 263-493 63-275 (374)
17 3sdr_A Alpha-bisabolene syntha 97.0 0.0002 6.9E-09 81.8 1.9 46 21-66 23-68 (817)
18 4hd1_A Squalene synthase HPNC; 88.5 21 0.00071 35.4 19.9 183 245-475 13-199 (294)
19 3acx_A Dehydrosqualene synthas 88.0 22 0.00075 35.1 18.9 188 269-493 27-231 (293)
20 3rmg_A Octaprenyl-diphosphate 87.3 24 0.00081 35.8 17.4 86 359-450 133-220 (334)
21 3lmd_A Geranylgeranyl pyrophos 85.9 5.5 0.00019 41.1 11.8 103 359-469 160-275 (360)
22 3oyr_A Trans-isoprenyl diphosp 84.1 39 0.0013 34.4 21.2 87 359-451 151-239 (345)
23 3ipi_A Geranyltranstransferase 83.4 5 0.00017 40.2 10.0 142 360-516 128-279 (295)
24 3mzv_A Decaprenyl diphosphate 71.6 90 0.0031 31.6 21.8 86 359-450 139-226 (341)
25 3m0g_A Farnesyl diphosphate sy 71.6 16 0.00053 36.6 9.5 110 369-493 147-269 (297)
26 3ts7_A Geranyltranstransferase 70.6 31 0.001 34.9 11.5 111 369-492 158-281 (324)
27 2ftz_A Geranyltranstransferase 70.4 42 0.0014 33.2 12.3 120 360-493 135-264 (284)
28 3p8r_A Geranyltranstransferase 67.8 21 0.00073 35.7 9.6 112 369-493 158-282 (302)
29 1rtr_A Geranyltranstransferase 66.5 22 0.00075 35.5 9.4 111 369-493 148-271 (301)
30 3lsn_A Geranyltranstransferase 65.4 39 0.0013 33.8 10.9 111 371-493 154-276 (304)
31 3p8l_A Geranyltranstransferase 65.4 31 0.0011 34.5 10.2 111 369-493 156-279 (302)
32 1wy0_A Geranylgeranyl pyrophos 65.2 48 0.0016 33.5 11.8 102 360-468 138-252 (342)
33 3apz_A Geranyl diphosphate syn 63.7 34 0.0012 34.7 10.4 87 359-451 153-241 (348)
34 3pko_A Geranylgeranyl pyrophos 61.8 78 0.0027 31.9 12.6 102 360-468 144-258 (334)
35 4dhd_A Polyprenyl synthetase; 60.1 44 0.0015 34.1 10.5 105 360-469 133-261 (358)
36 2h8o_A Geranyltranstransferase 59.7 38 0.0013 34.4 9.7 111 369-493 192-315 (335)
37 3lom_A Geranyltranstransferase 59.7 50 0.0017 33.1 10.5 113 369-492 158-282 (313)
38 4f62_A Geranyltranstransferase 57.6 38 0.0013 34.1 9.3 111 370-493 152-275 (317)
39 3pde_A Farnesyl-diphosphate sy 54.0 55 0.0019 32.8 9.7 110 370-493 156-278 (309)
40 1pd3_A Nonstructural protein N 53.1 10 0.00036 27.8 3.0 33 52-84 16-48 (58)
41 3uca_A Geranyltranstransferase 50.8 68 0.0023 32.3 9.9 112 369-493 180-304 (324)
42 3llw_A Geranyltranstransferase 49.2 45 0.0016 33.4 8.2 112 369-493 159-281 (311)
43 1rqj_A Geranyltranstransferase 49.1 85 0.0029 31.1 10.2 113 369-493 152-276 (299)
44 3npk_A Geranyltranstransferase 48.7 1.1E+02 0.0039 30.1 11.0 113 368-493 144-266 (291)
45 1wmw_A Geranylgeranyl diphosph 44.9 95 0.0032 31.1 9.9 102 360-469 131-246 (330)
46 3nf2_A Putative polyprenyl syn 44.4 99 0.0034 31.4 10.0 85 360-450 144-230 (352)
47 1c07_A Protein (epidermal grow 41.6 1.1E+02 0.0038 24.1 8.1 62 69-138 24-86 (95)
48 2j1p_A Geranylgeranyl pyrophos 40.7 33 0.0011 34.1 5.6 109 370-493 161-272 (293)
49 1qjt_A EH1, epidermal growth f 38.4 70 0.0024 25.8 6.4 65 69-141 25-89 (99)
50 3tc1_A Octaprenyl pyrophosphat 32.3 3.8E+02 0.013 26.5 12.9 83 359-450 122-206 (315)
51 1uby_A FPS, farnesyl diphospha 29.4 1.8E+02 0.006 29.7 9.1 88 360-451 170-264 (367)
52 2azj_A Geranylgeranyl pyrophos 28.8 1.9E+02 0.0067 28.3 9.0 117 360-493 136-258 (289)
53 1fi6_A EH domain protein REPS1 27.4 98 0.0034 24.2 5.4 72 59-138 9-84 (92)
54 2q80_A Geranylgeranyl pyrophos 27.2 2.4E+02 0.0082 27.8 9.4 85 359-450 111-195 (301)
55 3kra_B Geranyl diphosphate syn 27.1 68 0.0023 31.4 5.2 70 371-446 151-221 (274)
56 2her_A Fragment, farnesyl pyro 27.0 1.7E+02 0.0059 29.9 8.4 86 360-450 169-260 (368)
57 2e8v_A Geranylgeranyl pyrophos 26.3 1.2E+02 0.004 30.6 7.0 85 360-450 132-220 (340)
58 3vj8_A Squalene synthase; farn 25.8 5.1E+02 0.017 25.9 16.8 201 269-492 26-244 (343)
59 1yhl_A Farnesyl pyrophosphate 25.7 1.7E+02 0.0058 29.6 8.1 105 360-469 152-284 (362)
60 3aqb_B Component B of hexapren 25.0 1.6E+02 0.0053 29.4 7.6 88 359-450 130-217 (325)
61 3mav_A Farnesyl pyrophosphate 24.5 5.7E+02 0.02 26.0 14.7 87 360-449 179-291 (395)
62 3s9v_A Abietadiene synthase, c 22.3 37 0.0013 38.6 2.4 40 27-66 5-45 (785)
63 1eh2_A EPS15; calcium binding, 21.7 2.1E+02 0.0072 23.3 6.6 70 60-137 16-88 (106)
64 3lk5_A Geranylgeranyl pyrophos 21.5 6.5E+02 0.022 25.5 13.9 77 368-450 184-263 (380)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=1.6e-163 Score=1332.84 Aligned_cols=522 Identities=52% Similarity=0.912 Sum_probs=484.5
Q ss_pred cccccCCCCCCCCCCCccCccccCCCCcchhhhHHHHHHHHHHHHHHhhc-cCCcccchhhHHHHHHhCcccccHHHHHH
Q 039366 18 EKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKI-NKPSQNNLDLIDAIQRLGVSYHFESEIDE 96 (547)
Q Consensus 18 ~~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~~-~~~~~~~l~liD~lqrLGi~~hF~~EI~~ 96 (547)
+.++.||++|||||+|||+||++ ++....+.+.+|+++||++||+||.+ ..|++++|+|||+||||||+|||++||++
T Consensus 17 ~~~~~R~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~ 95 (554)
T 3g4d_A 17 NKDEMRPKADFQPSIWGDLFLNC-PDKNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIED 95 (554)
T ss_dssp --------CCCCCCTTTTTTTSC-CC---CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHH
T ss_pred cCCCCCCCCCCCccccccccccC-CCchhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence 35568999999999999999997 43324567899999999999999976 57999999999999999999999999999
Q ss_pred HHHHhHhhccCCCCCCCCCCchhHHHHHHHHHHhcCccccccccccccccccccccccccchhhhhhhhhhhccCCCCch
Q 039366 97 ILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEEN 176 (547)
Q Consensus 97 ~L~~i~~~~~~~~~~~~~~~dl~~~al~FRLLR~~Gy~vS~Dvf~~F~d~~g~F~~~l~~dv~~lL~LyeAs~l~~~gE~ 176 (547)
+|++||+. . .....||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+
T Consensus 96 ~L~~i~~~-~-----~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~ 169 (554)
T 3g4d_A 96 ELENIYHN-N-----NDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGED 169 (554)
T ss_dssp HHHHHHHS-C-----CCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHHHhc-c-----CCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcH
Confidence 99999985 1 11237999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHhhcCCCChHHHHHHhcCCCcccCchhhHHhhchhhhcccCcCcHHHHHHHhhchHHHHHHHHH
Q 039366 177 ILDEALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQK 256 (547)
Q Consensus 177 iLdea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~ 256 (547)
|||||+.||++||++.++++ +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+
T Consensus 170 iLdeA~~fs~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~ 248 (554)
T 3g4d_A 170 ILDEAISFTTHHLSLAVASL-DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRK 248 (554)
T ss_dssp HHHHHHHHHHHHHHHHSTTC-CTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999988766 78899999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhh---------------hhhHHHHHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhh
Q 039366 257 ELGDIS---------------RDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKR 321 (547)
Q Consensus 257 EL~~l~---------------Rdr~ve~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aier 321 (547)
||++++ |||+||||||++|++|||+||.+|+++||+++|++++||+||+|||+|||+.||+||+|
T Consensus 249 El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~R 328 (554)
T 3g4d_A 249 ELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIER 328 (554)
T ss_dssp HHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHh
Confidence 999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhccCChhHHHHHHHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhccc
Q 039366 322 WDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTS 401 (547)
Q Consensus 322 WD~~~~~~lPeymk~~f~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~ 401 (547)
||++++++||+|||+||.+|+|+++|+++++.++||+++++|++++|+++++||++||+|+++||+||+||||+||.+|+
T Consensus 329 WD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSs 408 (554)
T 3g4d_A 329 WDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTC 408 (554)
T ss_dssp CCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGS
T ss_pred cCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhCCCCHHHHHHHHH
Q 039366 402 AYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFR 481 (547)
Q Consensus 402 g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~ 481 (547)
|++++++++++++|+.+|+++++|++++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++
T Consensus 409 g~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~ 488 (554)
T 3g4d_A 409 GYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFN 488 (554)
T ss_dssp CHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhhhhceeccCCCCCCCchhHHHHHHhhhccccCC
Q 039366 482 KQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVPI 547 (547)
Q Consensus 482 ~~I~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 547 (547)
++|+++||+||++|++++++|++|+++++|+||++++||+++||||.|++.||++|++||++|||+
T Consensus 489 ~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 489 KHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 999999999999999988999999999999999999999999999999778999999999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=3.1e-162 Score=1321.73 Aligned_cols=521 Identities=49% Similarity=0.872 Sum_probs=494.6
Q ss_pred cccccCCCCCCCCCCCccCccccCCCCcchhhhHHHHHHHHHHHHHHhhc-cCCcccchhhHHHHHHhCcccccHHHHHH
Q 039366 18 EKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKI-NKPSQNNLDLIDAIQRLGVSYHFESEIDE 96 (547)
Q Consensus 18 ~~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~~-~~~~~~~l~liD~lqrLGi~~hF~~EI~~ 96 (547)
..++.||++|||||+|||+||++.++....+.+.+|+++||++||+||.+ ..|++++|+|||+||||||+|||++||++
T Consensus 12 ~~~~~R~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~ 91 (550)
T 3m00_A 12 EEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDD 91 (550)
T ss_dssp ----CCCCCCCCCCTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCHHHHHH
T ss_pred ccccCCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence 34568999999999999999997554324567899999999999999975 47999999999999999999999999999
Q ss_pred HHHHhHhhccCCCCCCCCCCchhHHHHHHHHHHhcCccccccccccccccccccccccccchhhhhhhhhhhccCCCCch
Q 039366 97 ILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEEN 176 (547)
Q Consensus 97 ~L~~i~~~~~~~~~~~~~~~dl~~~al~FRLLR~~Gy~vS~Dvf~~F~d~~g~F~~~l~~dv~~lL~LyeAs~l~~~gE~ 176 (547)
+|++||+.|. ...||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+
T Consensus 92 ~L~~i~~~~~-------~~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~gE~ 164 (550)
T 3m00_A 92 ILDQIYNQNS-------NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADD 164 (550)
T ss_dssp HHHHHHHHCC-------CCSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCG
T ss_pred HHHHHHHhcc-------cCCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHhcCCCCcH
Confidence 9999999742 247999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHhhcCCCChHHHHHHhcCCCcccCchhhHHhhchh-hhcccCcCcHHHHHHHhhchHHHHHHHH
Q 039366 177 ILDEALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIP-IYQEQSSHNEALLTFAKLDFNKLQKLHQ 255 (547)
Q Consensus 177 iLdea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~-~y~~~~~~n~~lLelAkldFn~~Q~~hq 255 (547)
|||||+.||++||+++++++ +++|+++|+|||++|||+++||||||+||+ +|++++++|++||||||||||+||++||
T Consensus 165 iLdeA~~fs~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~~Q~~hq 243 (550)
T 3m00_A 165 ILEDALAFSTIHLESAAPHL-KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHK 243 (550)
T ss_dssp GGTTHHHHHHHHHHHHGGGC-CTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-CccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999988776 788999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHhhhhh---------------hhhHHHHHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHh
Q 039366 256 KELGDIS---------------RDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIK 320 (547)
Q Consensus 256 ~EL~~l~---------------Rdr~ve~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aie 320 (547)
+||++++ |||+||||||++|++|||+||.+|+++||+++|++++||+||+|||+|||+.||+||+
T Consensus 244 ~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~ 323 (550)
T 3m00_A 244 QELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQ 323 (550)
T ss_dssp HHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHH
Confidence 9999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhccCChhHHHHHHHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcc
Q 039366 321 RWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVT 400 (547)
Q Consensus 321 rWD~~~~~~lPeymk~~f~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS 400 (547)
|||++++++||+|||+||.+|+|+++|+++++.++||+++++|++++|+++++||++||+|+++||+||+||||+||.+|
T Consensus 324 RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vS 403 (550)
T 3m00_A 324 RWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALAT 403 (550)
T ss_dssp HCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGG
T ss_pred hcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcccc
Confidence 99999999999999999999999999999989899999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhCCCCHHHHHHHH
Q 039366 401 SAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEF 480 (547)
Q Consensus 401 ~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i 480 (547)
+|++++++++++|+ +.+|+++++|+.++|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+|+|+|+|++++
T Consensus 404 sg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSeEeA~~~i 482 (550)
T 3m00_A 404 TTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKF 482 (550)
T ss_dssp GSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHHHHHHH
T ss_pred chHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCHHHHHHHH
Confidence 99999999998887 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhhhhceeccC-CCCCCCchhHHHHHHhhhccccCC
Q 039366 481 RKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYE-DGYTHSAVVLKDFVASLLINPVPI 547 (547)
Q Consensus 481 ~~~I~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~~ 547 (547)
++||+++||+||++|++++++|++|+++++|+||++++||+++ ||||.|++.||++|++||++|||+
T Consensus 483 ~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 483 QNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 9999999999999999988999999999999999999999998 999999778999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=2.3e-161 Score=1317.51 Aligned_cols=521 Identities=37% Similarity=0.621 Sum_probs=489.7
Q ss_pred cCCCCCCCCCCCccCccccCCCCcchhhhHHHHHHHHHHHHHHhhccC-CcccchhhHHHHHHhCcccccHHHHHHHHHH
Q 039366 22 TRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKINK-PSQNNLDLIDAIQRLGVSYHFESEIDEILGK 100 (547)
Q Consensus 22 ~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~-~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~ 100 (547)
.|+++|||||+|||+||++.++..+.+.+.+++++||++||+||.+.. +++++|+|||+||||||+|||++||+++|++
T Consensus 14 ~~~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~ 93 (555)
T 3n0f_A 14 ARRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDR 93 (555)
T ss_dssp ---CCCCCCCTTCHHHHTCC-----CHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHHHH
T ss_pred cCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHH
Confidence 699999999999999999754332556789999999999999997666 8999999999999999999999999999999
Q ss_pred hHhhccCCCCCCCCCCchhHHHHHHHHHHhcCccccccccccccccccccccccccchhhhhhhhhhhccCCCCchHHHH
Q 039366 101 LHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDE 180 (547)
Q Consensus 101 i~~~~~~~~~~~~~~~dl~~~al~FRLLR~~Gy~vS~Dvf~~F~d~~g~F~~~l~~dv~~lL~LyeAs~l~~~gE~iLde 180 (547)
||+. .+|+.+ ...||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|||+||||
T Consensus 94 i~~~--~~~~~~-~~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLde 170 (555)
T 3n0f_A 94 FVSS--GGFDGV-TKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDE 170 (555)
T ss_dssp HHHT--CHHHHH-TTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHH
T ss_pred HHhh--cccccc-ccCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccCCcHHHHH
Confidence 9973 001112 2479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHh-hcCCCChHHHHHHhcCCCcccCchhhHHhhchhhhcccCcCcHHHHHHHhhchHHHHHHHHHHhh
Q 039366 181 ALAFTTSQLESIAA-HQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELG 259 (547)
Q Consensus 181 a~~ft~~~L~~~~~-~~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~ 259 (547)
|++||++||++++. .+ +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||+
T Consensus 171 A~~Fs~~~L~~~~~~~~-~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~EL~ 249 (555)
T 3n0f_A 171 ARVFAISHLKELSEEKI-GKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLR 249 (555)
T ss_dssp HHHHHHHHHHTCCHHHH-CHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-CchHHHHHHHHhcCCcccCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHhHHHHH
Confidence 99999999999765 45 77899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh---------------hhhHHHHHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhhccc
Q 039366 260 DIS---------------RDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDI 324 (547)
Q Consensus 260 ~l~---------------Rdr~ve~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aierWD~ 324 (547)
+++ |||+||||||++|++|||+||.+|++|||+++|++++||+||+|||+|||+.||+||+|||.
T Consensus 250 ~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~ 329 (555)
T 3n0f_A 250 ETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDV 329 (555)
T ss_dssp HHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCc
Confidence 998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCChhHHHHHHHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchh
Q 039366 325 SAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYP 404 (547)
Q Consensus 325 ~~~~~lPeymk~~f~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~ 404 (547)
+++++||+|||+||.+|+++++|+++++.+++|.++++|++++|+++++||++||+|+++||+||+||||+||.+|+|++
T Consensus 330 ~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~ 409 (555)
T 3n0f_A 330 NAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGP 409 (555)
T ss_dssp GGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHH
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHH
Confidence 99999999999999999999999998887777778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhCCCCHHHHHHHHHHHH
Q 039366 405 MLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFRKQV 484 (547)
Q Consensus 405 ~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I 484 (547)
+++++++++||+.+|+++++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|++++++||
T Consensus 410 ~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~I 489 (555)
T 3n0f_A 410 LQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLI 489 (555)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCHHHHHHHHHHhhhhhceeccCCCCCCCchhHHHHHHhhhccccC
Q 039366 485 SNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVP 546 (547)
Q Consensus 485 ~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 546 (547)
+++||+||++|++++++|++|+++++|+||++++||+++||||.|++.||++|++||++|||
T Consensus 490 e~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 490 DETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 99999999999998899999999999999999999999999999977899999999999996
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=4.3e-156 Score=1282.16 Aligned_cols=523 Identities=33% Similarity=0.577 Sum_probs=499.9
Q ss_pred CCCCCCCCCCCccCccccCCCCcchhhhHHHHHHHHHHHHHHhhccCCcccchhhHHHHHHhCcccccHHHHHHHHHHhH
Q 039366 23 RRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKINKPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLH 102 (547)
Q Consensus 23 r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~ 102 (547)
||++|||||+|||+||++.+.....+.+.+++++||++||+|+.+..|++++|+|||+||||||+|||++||+++|++||
T Consensus 2 r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~ 81 (543)
T 2ong_A 2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIY 81 (543)
T ss_dssp CCCCCCCCCSSCHHHHHHCCCSSCSTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCcccccCCCchhhhhHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHH
Confidence 89999999999999998643332445789999999999999998777999999999999999999999999999999999
Q ss_pred hhccCCCCCCC-C-CCchhHHHHHHHHHHhcCccccccccccccccccccccccccchhhhhhhhhhhccCCCCchHHHH
Q 039366 103 DAHQDCGLGDN-E-NDELYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDE 180 (547)
Q Consensus 103 ~~~~~~~~~~~-~-~~dl~~~al~FRLLR~~Gy~vS~Dvf~~F~d~~g~F~~~l~~dv~~lL~LyeAs~l~~~gE~iLde 180 (547)
+.| ..|+++. . ..||++|||+|||||||||+||||||++|||++|+|++++.+||+|||||||||||++|||+||||
T Consensus 82 ~~~-~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~e 160 (543)
T 2ong_A 82 LDH-HYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLES 160 (543)
T ss_dssp HTT-TCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHHHH
T ss_pred Hhh-cccccccccccCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCChHHHHH
Confidence 874 3444431 2 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHhh-cCCCChHHHHHHhcCCCcccCchhhHHhhchhhhcccCcCcHHHHHHHhhchHHHHHHHHHHhh
Q 039366 181 ALAFTTSQLESIAAH-QISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELG 259 (547)
Q Consensus 181 a~~ft~~~L~~~~~~-~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~ 259 (547)
|+.||++||++++.. +.+++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||+
T Consensus 161 A~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~ 240 (543)
T 2ong_A 161 AREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELK 240 (543)
T ss_dssp HHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999875 4367899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh---------------hhhHHHHHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhhccc
Q 039366 260 DIS---------------RDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDI 324 (547)
Q Consensus 260 ~l~---------------Rdr~ve~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aierWD~ 324 (547)
+++ |||++|||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||.
T Consensus 241 ~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~ 320 (543)
T 2ong_A 241 ESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDI 320 (543)
T ss_dssp HHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCc
Confidence 999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCChhHHHHHHHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchh
Q 039366 325 SAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYP 404 (547)
Q Consensus 325 ~~~~~lPeymk~~f~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~ 404 (547)
++++++|+|||+||.+|++++++++.++.+.++.++++|++++|++++++|++||+|+++||+||+||||++|.+|+|++
T Consensus 321 ~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~ 400 (543)
T 2ong_A 321 NSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGP 400 (543)
T ss_dssp STTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHH
T ss_pred cccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHH
Confidence 99999999999999999999999999888877778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhCCCCHHHHHHHHHHHH
Q 039366 405 MLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFRKQV 484 (547)
Q Consensus 405 ~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I 484 (547)
+++++++++||..+|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|.|||+|+|+|+|+|+++++++|
T Consensus 401 ~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~i 480 (543)
T 2ong_A 401 CMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLI 480 (543)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc-cCCCCCCHHHHHHHHHHhhhhhceeccCCCCCCCchhHHHHHHhhhccccC
Q 039366 485 SNAWKDINEDC-LRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVP 546 (547)
Q Consensus 485 ~~~wk~ln~e~-l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 546 (547)
+++||+||++| ++++++|++|+++++|+||+++++|+++||||.|++.||++|++||++|||
T Consensus 481 e~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 481 AEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 99999999999 998889999999999999999999999999999977899999999999997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=2.1e-155 Score=1276.19 Aligned_cols=525 Identities=35% Similarity=0.659 Sum_probs=474.2
Q ss_pred ccCCCCCCCCCCCccCccccCCCCc-chhhhHHHHHHHHHHHHHHhhccCCcccchhhHHHHHHhCcccccHHHHHHHHH
Q 039366 21 STRRSANFHPSIWGDRFLSYTSDSM-EKDDGSAKHQELKEEIRRMLKINKPSQNNLDLIDAIQRLGVSYHFESEIDEILG 99 (547)
Q Consensus 21 ~~r~~~~~~ps~W~~~fl~~~~~~~-~~~~~~~~~~~lk~~v~~~l~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~ 99 (547)
+.||++|||||+|||+||+ +++.. ..+.+.+++++||++||+|+.+..|++++|+|||+||||||+|||++||+++|+
T Consensus 4 ~~r~~~~~~ps~W~~~fl~-s~~~~~~~~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~ 82 (549)
T 1n1b_A 4 QIRRSGNYQPALWDSNYIQ-SLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILG 82 (549)
T ss_dssp -----------CCCHHHHH-HCCCSTTSHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCccc-CCCcchhhhHHHHHHHHHHHHHHHHHhcccCHHHHHHhHHHHHhCCchhhhHHHHHHHHH
Confidence 4699999999999999995 44332 456789999999999999998777999999999999999999999999999999
Q ss_pred HhHhhccCCCCCCCCCCchhHHHHHHHHHHhcCcccccccccccccccc-ccccccccchhhhhhhhhhhccCCCCchHH
Q 039366 100 KLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDG-NFKTSLAKDVRGMLSLFEATHLGVHEENIL 178 (547)
Q Consensus 100 ~i~~~~~~~~~~~~~~~dl~~~al~FRLLR~~Gy~vS~Dvf~~F~d~~g-~F~~~l~~dv~~lL~LyeAs~l~~~gE~iL 178 (547)
+||+.+...........||++|||+|||||||||+||||||++|||++| +|++++.+||+||||||||||+++|||+||
T Consensus 83 ~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE~iL 162 (549)
T 1n1b_A 83 VIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTL 162 (549)
T ss_dssp HHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHhhhccccccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCCChHHH
Confidence 9998631100001124699999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHhh---cCCCChHHHHHHhcCCCcccCchhhHHhhchhhhcccCcCcHHHHHHHhhchHHHHHHHH
Q 039366 179 DEALAFTTSQLESIAAH---QISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQ 255 (547)
Q Consensus 179 dea~~ft~~~L~~~~~~---~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq 255 (547)
|||++||++||++++.. +.+++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||
T Consensus 163 ~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq 242 (549)
T 1n1b_A 163 ELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQ 242 (549)
T ss_dssp HHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHHH
Confidence 99999999999998764 326789999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhh---------------hhhHHHHHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHh
Q 039366 256 KELGDIS---------------RDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIK 320 (547)
Q Consensus 256 ~EL~~l~---------------Rdr~ve~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aie 320 (547)
+||++++ |||++|||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+
T Consensus 243 ~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~ 322 (549)
T 1n1b_A 243 QELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFK 322 (549)
T ss_dssp HHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhccCChhHHHHHHHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcc
Q 039366 321 RWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVT 400 (547)
Q Consensus 321 rWD~~~~~~lPeymk~~f~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS 400 (547)
|||.++++++|+|||+||.+|++++++++.++.+.++.++++|++++|++++++|++||+|+++||+||+||||++|.+|
T Consensus 323 rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS 402 (549)
T 1n1b_A 323 RWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 402 (549)
T ss_dssp HTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred hcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccc
Confidence 99999999999999999999999999999988777777889999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhcCCCcchhH-HhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhCCCCHHHHHHH
Q 039366 401 SAYPMLSTTSFVGMGDIVTKES-FEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNE 479 (547)
Q Consensus 401 ~g~~~~~~~~~~~~g~~l~~ev-~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~ 479 (547)
+|+++++++++++||..+|+++ ++|+.++|+++++++.|+||+|||+||++|+++|+++|+|.|||+|+|+|+|+|+++
T Consensus 403 ~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~ 482 (549)
T 1n1b_A 403 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEH 482 (549)
T ss_dssp TCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhhhhceeccCCCCCCCchhHHHHHHhhhccccC
Q 039366 480 FRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVP 546 (547)
Q Consensus 480 i~~~I~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 546 (547)
+++||+++||+||++|++++++|++|+++++|+||+++++|+++||||.|++.||++|++||++|||
T Consensus 483 i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 483 VKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 9999999999999999998899999999999999999999999999999987899999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=5.5e-155 Score=1276.61 Aligned_cols=521 Identities=34% Similarity=0.589 Sum_probs=456.1
Q ss_pred ccccCCCCCCCCCCCccCccccCCCCcchhhhHHHHHHHHHHHHHHhhccCCcccchhhHHHHHHhCcccccHHHHHHHH
Q 039366 19 KDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKINKPSQNNLDLIDAIQRLGVSYHFESEIDEIL 98 (547)
Q Consensus 19 ~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L 98 (547)
.+..||++|||||+|||+||++.+.....+.+.+++++||++||+|+.+..|++++|+|||+||||||+|||++||+++|
T Consensus 31 ~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~Vr~~~~~~~d~~~~l~lID~lqrLGi~~hFe~EI~~~L 110 (569)
T 2j5c_A 31 KDRWIRTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEIL 110 (569)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCGGGGHHHHHHHH
T ss_pred ccccCCCCCCCCCcCCcccccCCCchhhhHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhCCchhhhHHHHHHHH
Confidence 34579999999999999999864332244578999999999999999877799999999999999999999999999999
Q ss_pred HHhH-hhccCCCCCCCCCCchhHHHHHHHHHHhcCcccccccccccccccc-ccccccccchhhhhhhhhhhccCCCCch
Q 039366 99 GKLH-DAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDG-NFKTSLAKDVRGMLSLFEATHLGVHEEN 176 (547)
Q Consensus 99 ~~i~-~~~~~~~~~~~~~~dl~~~al~FRLLR~~Gy~vS~Dvf~~F~d~~g-~F~~~l~~dv~~lL~LyeAs~l~~~gE~ 176 (547)
++|| +.+. . ...||++|||+|||||||||+||||||++|||++| +|++++.+||+|||||||||||++|||+
T Consensus 111 ~~i~~~~~~-----~-~~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~gE~ 184 (569)
T 2j5c_A 111 NSKYYTNNE-----I-DERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEE 184 (569)
T ss_dssp HHHTTSSCC-----S-CTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHHhccC-----c-ccCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCCChH
Confidence 9999 7521 1 34699999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHhhcCCCChHHHHHHhcCCCcccCchhhHHhhchhhhcccCcCcHHHHHHHhhchHHHHHHHHH
Q 039366 177 ILDEALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQK 256 (547)
Q Consensus 177 iLdea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~ 256 (547)
|||||++||++||++++.++.+++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+
T Consensus 185 iLdeA~~Ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~ 264 (569)
T 2j5c_A 185 TLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQ 264 (569)
T ss_dssp HHHHHHHHHHHTTSSCC----CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999987654367899999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhh---------------hhhHHHHHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhh
Q 039366 257 ELGDIS---------------RDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKR 321 (547)
Q Consensus 257 EL~~l~---------------Rdr~ve~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aier 321 (547)
||++++ |||++|||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+|
T Consensus 265 EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~r 344 (569)
T 2j5c_A 265 ELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQR 344 (569)
T ss_dssp HHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhccCChhHHHHHHHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhccc
Q 039366 322 WDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTS 401 (547)
Q Consensus 322 WD~~~~~~lPeymk~~f~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~ 401 (547)
||.++++++|+|||+||.+|++++++++.++.+.++.++++|++++|++++++|++||+|+.+||+||+||||++|.+|+
T Consensus 345 WD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSs 424 (569)
T 2j5c_A 345 WDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISI 424 (569)
T ss_dssp TSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred cCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccc
Confidence 99999999999999999999999999999888877778999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhCCCCHHHHHHHHH
Q 039366 402 AYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFR 481 (547)
Q Consensus 402 g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~ 481 (547)
|++++++++++++|..+|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|.|||+|+|+|+|+|+++++
T Consensus 425 g~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~eeA~~~i~ 504 (569)
T 2j5c_A 425 GGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVR 504 (569)
T ss_dssp SCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------CCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhhhhceeccC-CCCCCCchhHHHHHHhhhccccC
Q 039366 482 KQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYE-DGYTHSAVVLKDFVASLLINPVP 546 (547)
Q Consensus 482 ~~I~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~ 546 (547)
++|+++||+||++|++ +++|++|+++++|+||+++++|+++ ||||.|++.||++|++||++|||
T Consensus 505 ~~ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 505 SLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 9999999999999999 8899999999999999999999999 99999977899999999999997
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=2.8e-139 Score=1187.09 Aligned_cols=479 Identities=35% Similarity=0.615 Sum_probs=446.9
Q ss_pred CCcccchhhHHHHHHhCcccccHHHHHHHHHHhHhhccCCCCCCCC---CCchhHHHHHHHHHHhcCccccccccccccc
Q 039366 69 KPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNE---NDELYYISLQFRLLRQHGYKISADVFKRFKD 145 (547)
Q Consensus 69 ~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~---~~dl~~~al~FRLLR~~Gy~vS~Dvf~~F~d 145 (547)
.|++++|++||+||||||+|||++||+++|+++|+.|..+|+++.+ ..||++|||+|||||||||+||||||++|+|
T Consensus 296 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d 375 (817)
T 3sdr_A 296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKD 375 (817)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBC
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHhh
Confidence 6899999999999999999999999999999999986555665531 3699999999999999999999999999999
Q ss_pred ccccccccc---ccchhhhhhhhhhhccCCCCchHHHHHHHHhHHHHHHHHhh---c----CCCChHHHHHHhcCCCccc
Q 039366 146 SDGNFKTSL---AKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAH---Q----ISSPLAEQVKHALIQPIHR 215 (547)
Q Consensus 146 ~~g~F~~~l---~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~---~----~~~~l~~~V~~aL~~P~~~ 215 (547)
++|+|++++ .+||+|||||||||||++|||+|||||+.||++||++++.. + ..++|+++|+|||++|||+
T Consensus 376 ~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~ 455 (817)
T 3sdr_A 376 ANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHA 455 (817)
T ss_dssp C--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCSTT
T ss_pred cCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchhc
Confidence 999999976 59999999999999999999999999999999999998752 1 1477999999999999999
Q ss_pred CchhhHHhhchhhhcccCc------------CcHHHHHHHhhchHHHHHHHHHHhhhhh--------------hhhHHHH
Q 039366 216 GLQRLEARHYIPIYQEQSS------------HNEALLTFAKLDFNKLQKLHQKELGDIS--------------RDRIAEC 269 (547)
Q Consensus 216 ~~~rle~r~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~EL~~l~--------------Rdr~ve~ 269 (547)
++||||||+||++|++++. +|++||||||||||+||++||+||++++ |||+|||
T Consensus 456 ~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr~ve~ 535 (817)
T 3sdr_A 456 SVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPLFTFARERPLEF 535 (817)
T ss_dssp CCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGCTTSCCCHHHH
T ss_pred cChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCCCcCccHHHHHHHH
Confidence 9999999999999998775 4999999999999999999999999998 9999999
Q ss_pred HhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhhccchhhccCChhHHHHHHHHHHHHHHHH
Q 039366 270 YFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAE 349 (547)
Q Consensus 270 yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aierWD~~~~~~lPeymk~~f~al~~~~~ei~ 349 (547)
|||++|++|||+||.+|++|||++++++++||+||+|||+|||+.||+||+|||.+++++||+|||+||.+|+++++|++
T Consensus 536 Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~ 615 (817)
T 3sdr_A 536 YFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVA 615 (817)
T ss_dssp HHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhH-HHHHHHHhcCCCcchhHHhhhc-
Q 039366 350 KDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPM-LSTTSFVGMGDIVTKESFEWLF- 427 (547)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~-~~~~~~~~~g~~l~~ev~e~~~- 427 (547)
+++.+++|.++++|++++|++++++|++||+|+++||+||+||||+||.+|+|+++ ++.++++++|+.+|+|+++|+.
T Consensus 616 ~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~~~~ 695 (817)
T 3sdr_A 616 WEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDY 695 (817)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHTTCC
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhcccc
Confidence 88877656688999999999999999999999999999999999999999999999 8888899999999999999964
Q ss_pred -chhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhC-CCCHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHH
Q 039366 428 -SNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQH-GATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPL 505 (547)
Q Consensus 428 -~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~-g~S~EeA~~~i~~~I~~~wk~ln~e~l~~~~~p~~~ 505 (547)
++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+||++|++++++|++|
T Consensus 696 ~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e~l~~~~~p~~~ 775 (817)
T 3sdr_A 696 PGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPFAC 775 (817)
T ss_dssp TTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHH
T ss_pred cchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 445999999999999999999999999999999999999999 799999999999999999999999999988999999
Q ss_pred HHHHHHHhhhhhceeccCCCCCCCchhHHHHHHhhhccccCC
Q 039366 506 LMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVPI 547 (547)
Q Consensus 506 ~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 547 (547)
+++++|+||++++||+++||||.|++.||++|++||++||++
T Consensus 776 ~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 776 KKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999778999999999999985
No 8
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=9.7e-139 Score=1175.60 Aligned_cols=476 Identities=32% Similarity=0.562 Sum_probs=446.0
Q ss_pred CCcccchhhHHHHHHhCcccccHHHHHHHHHHhHhhccCCCCCCCC---CCchhHHHHHHHHHHhcCccccccccccccc
Q 039366 69 KPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNE---NDELYYISLQFRLLRQHGYKISADVFKRFKD 145 (547)
Q Consensus 69 ~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~---~~dl~~~al~FRLLR~~Gy~vS~Dvf~~F~d 145 (547)
.|++++||+||+||||||+|||++||+++|+++|+.|..+|+++.+ ..||++|||+|||||||||+||||||++|+|
T Consensus 244 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d 323 (764)
T 3p5p_A 244 IDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKD 323 (764)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBC
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhhc
Confidence 6899999999999999999999999999999999986555665531 3699999999999999999999999999999
Q ss_pred cccccccc---cccchhhhhhhhhhhccCCCCchHHHHHHHHhHHHHHHHHhh--cCCCChHHHHHHhcCCCcccCchhh
Q 039366 146 SDGNFKTS---LAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAH--QISSPLAEQVKHALIQPIHRGLQRL 220 (547)
Q Consensus 146 ~~g~F~~~---l~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~--~~~~~l~~~V~~aL~~P~~~~~~rl 220 (547)
++|+|+++ +.+||+||||||||||+++|||+|||||+.||++||++++.. ..+++|+++|+|||++|||+++|||
T Consensus 324 ~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rl 403 (764)
T 3p5p_A 324 ENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRL 403 (764)
T ss_dssp TTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHHH
T ss_pred CCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchHH
Confidence 99999985 589999999999999999999999999999999999998763 2277899999999999999999999
Q ss_pred HHhhchhhhcccCc------------CcHHHHHHHhhchHHHHHHHHHHhhhhh--------------hhhHHHHHhhhh
Q 039366 221 EARHYIPIYQEQSS------------HNEALLTFAKLDFNKLQKLHQKELGDIS--------------RDRIAECYFWIL 274 (547)
Q Consensus 221 e~r~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~EL~~l~--------------Rdr~ve~yfw~~ 274 (547)
|||+||++|++++. +|++||||||||||+||++||+||++++ |||+||||||++
T Consensus 404 ear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l~~l~faRdr~ve~Yfw~~ 483 (764)
T 3p5p_A 404 EARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMADINFTRHRVAEVYFSSA 483 (764)
T ss_dssp HHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCCCcCccHHHHHHHHHHHHH
Confidence 99999999998765 4999999999999999999999999998 999999999999
Q ss_pred ccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhhccchhhccCChhHHHHHHHHHHHHHHHHHHHcc
Q 039366 275 GVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAP 354 (547)
Q Consensus 275 ~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aierWD~~~~~~lPeymk~~f~al~~~~~ei~~~~~~ 354 (547)
| |||+||.+|++|||+++|++++||+||+|||+|||+.||+||+|||.+++++||+|||+||.+|+++++|+++++.+
T Consensus 484 ~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~~ 561 (764)
T 3p5p_A 484 T--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVK 561 (764)
T ss_dssp C--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred -cCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcchhHHH
Q 039366 355 -QGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFI 433 (547)
Q Consensus 355 -~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~ 433 (547)
+|+ ++++|++++|++++++|++||+|+++||+||+||||+||.+|+|++++++++++++|+.+|+++++|+..+|+|+
T Consensus 562 ~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~ 640 (764)
T 3p5p_A 562 VQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMF 640 (764)
T ss_dssp HHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTSHHH
T ss_pred hcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhHHHH
Confidence 555 789999999999999999999999999999999999999999999999999999999999999999966669999
Q ss_pred HHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhC-CCCHHHHHHHHHHHHHHHHHHHhhhccC-CCCCCHHHHHHHHH
Q 039366 434 RASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQH-GATEEEACNEFRKQVSNAWKDINEDCLR-PTVLPMPLLMRILN 511 (547)
Q Consensus 434 ~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~-g~S~EeA~~~i~~~I~~~wk~ln~e~l~-~~~~p~~~~~~~lN 511 (547)
++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+||++|++ ++++|++|+++++|
T Consensus 641 ~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~~~~p~~~~~~~~n 720 (764)
T 3p5p_A 641 ELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFN 720 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHH
T ss_pred HHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999 7999999999999999999999999997 77899999999999
Q ss_pred HhhhhhceeccCCCCCCCchhHHHHHHhhhccccCC
Q 039366 512 LTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVPI 547 (547)
Q Consensus 512 ~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 547 (547)
+||++++||+++||||.|+..||++|++||++||++
T Consensus 721 ~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 721 LRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp THHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 999999999999999999767999999999999974
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=8.2e-139 Score=1179.04 Aligned_cols=476 Identities=33% Similarity=0.570 Sum_probs=449.1
Q ss_pred CCcccchhhHHHHHHhCcccccHHHHHHHHHHhHhhccCCCCCCCC---CCchhHHHHHHHHHHhcCccccccccccccc
Q 039366 69 KPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNE---NDELYYISLQFRLLRQHGYKISADVFKRFKD 145 (547)
Q Consensus 69 ~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~---~~dl~~~al~FRLLR~~Gy~vS~Dvf~~F~d 145 (547)
.|++++||+||+||||||+|||++||+++|+++|+.|..+|+++.. ..||++|||+|||||||||+||||||++|+|
T Consensus 268 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d 347 (785)
T 3s9v_A 268 LDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRD 347 (785)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBC
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 5899999999999999999999999999999999986555655432 3699999999999999999999999999999
Q ss_pred ccccccccc---ccchhhhhhhhhhhccCCCCchHHHHHHHHhHHHHHHHHhh-------cCCCChHHHHHHhcCCCccc
Q 039366 146 SDGNFKTSL---AKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAH-------QISSPLAEQVKHALIQPIHR 215 (547)
Q Consensus 146 ~~g~F~~~l---~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~-------~~~~~l~~~V~~aL~~P~~~ 215 (547)
++|+|++++ .+||+||||||||||+++|||+|||||+.||++||++++.. ..+++|+++|+|||++|||+
T Consensus 348 ~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~~ 427 (785)
T 3s9v_A 348 ENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHK 427 (785)
T ss_dssp TTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGGG
T ss_pred cCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCcccc
Confidence 999999876 69999999999999999999999999999999999998753 12678999999999999999
Q ss_pred CchhhHHhhchhhhcccCc------------CcHHHHHHHhhchHHHHHHHHHHhhhhh--------------hhhHHHH
Q 039366 216 GLQRLEARHYIPIYQEQSS------------HNEALLTFAKLDFNKLQKLHQKELGDIS--------------RDRIAEC 269 (547)
Q Consensus 216 ~~~rle~r~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~EL~~l~--------------Rdr~ve~ 269 (547)
++||||||+||++|++++. +|++||||||||||+||++||+||++++ |||+|||
T Consensus 428 ~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr~ve~ 507 (785)
T 3s9v_A 428 SMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTDLNFTRERVTEI 507 (785)
T ss_dssp CCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCSSSCCCHHHH
T ss_pred CchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCcCccHHHHHHHH
Confidence 9999999999999998875 4999999999999999999999999998 9999999
Q ss_pred HhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhhccchhhccCChhHHHHHHHHHHHHHHHH
Q 039366 270 YFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAE 349 (547)
Q Consensus 270 yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aierWD~~~~~~lPeymk~~f~al~~~~~ei~ 349 (547)
|||++|++|||+||.+|++|||++++++++||+||+|||+|||+.||+||+|||.+++++||+|||+||.+|+++++|++
T Consensus 508 Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~nei~ 587 (785)
T 3s9v_A 508 YFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIA 587 (785)
T ss_dssp HHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcc-cCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcc
Q 039366 350 KDLAP-QGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFS 428 (547)
Q Consensus 350 ~~~~~-~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~ 428 (547)
+++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||++|+|++++++++++++|+.+|+++++|+..
T Consensus 588 ~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~~~~ 666 (785)
T 3s9v_A 588 KEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDR 666 (785)
T ss_dssp HHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTTTST
T ss_pred HHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhcccc
Confidence 88877 555 7899999999999999999999999999999999999999999999999999999999999999999655
Q ss_pred hhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhC-CCCHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHH
Q 039366 429 NPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQH-GATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLM 507 (547)
Q Consensus 429 ~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~-g~S~EeA~~~i~~~I~~~wk~ln~e~l~~~~~p~~~~~ 507 (547)
+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+||++|++++ +|++|++
T Consensus 667 ~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~-~p~~~~~ 745 (785)
T 3s9v_A 667 ESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK-IPDIYKR 745 (785)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHH
T ss_pred cHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 69999999999999999999999999999999999999999 999999999999999999999999999877 9999999
Q ss_pred HHHHHhhhhhceeccCCCCCCCch-hHHHHHHhhhccccC
Q 039366 508 RILNLTRVIDVIYKYEDGYTHSAV-VLKDFVASLLINPVP 546 (547)
Q Consensus 508 ~~lN~aR~~~~~Y~~~Dg~t~~~~-~~k~~i~~ll~~Pi~ 546 (547)
+++|+||++++||+++||||.|++ .||++|++||++||.
T Consensus 746 ~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 746 LVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 999999999999999999999975 699999999999983
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=2.1e-104 Score=887.41 Aligned_cols=440 Identities=22% Similarity=0.314 Sum_probs=380.9
Q ss_pred HHHHHHHHHHHHHHhhcc-----CCcccchhhHHHHHHhCcccccHHHHHHHHHHhHhhccCCCCCCCC---CCchhHHH
Q 039366 51 SAKHQELKEEIRRMLKIN-----KPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNE---NDELYYIS 122 (547)
Q Consensus 51 ~~~~~~lk~~v~~~l~~~-----~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~---~~dl~~~a 122 (547)
.+..+-|+..|+++.... .|++++|++||+||||||+|||++||+++|+++|+.|...|+++.. ..||++||
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tA 299 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTA 299 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHH
Confidence 566778999998876532 6899999999999999999999999999999999975555654422 36999999
Q ss_pred HHHHHHHhcCccccccccccccccccccccc---cccchhhhhhhhhhhccCCCCchHHHHHHHHhHHHHHHHHhh--c-
Q 039366 123 LQFRLLRQHGYKISADVFKRFKDSDGNFKTS---LAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAH--Q- 196 (547)
Q Consensus 123 l~FRLLR~~Gy~vS~Dvf~~F~d~~g~F~~~---l~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~--~- 196 (547)
|+|||||||||+||||||++|+ ++|+|++. +.+|++|||+||||||+++|||+|||||+.||++||++.+.. +
T Consensus 300 L~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~ 378 (727)
T 3pya_A 300 MAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELI 378 (727)
T ss_dssp HHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999 88999954 368999999999999999999999999999999999998752 1
Q ss_pred ----CCCChHHHHHHhcCCCcccCchhhHHhhchhhhcccCc-------------CcHHHHHHHhhchHHHHHHHHHHhh
Q 039366 197 ----ISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSS-------------HNEALLTFAKLDFNKLQKLHQKELG 259 (547)
Q Consensus 197 ----~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~-------------~n~~lLelAkldFn~~Q~~hq~EL~ 259 (547)
.+++|+++|+|||++|||+++||||||+||++|+++++ +|++||||||||||+||++||+||+
T Consensus 379 dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~ 458 (727)
T 3pya_A 379 DKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWD 458 (727)
T ss_dssp CSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHh
Confidence 14789999999999999999999999999999997654 6999999999999999999999999
Q ss_pred hhh--------------hhhHHHHHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhhccch
Q 039366 260 DIS--------------RDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDIS 325 (547)
Q Consensus 260 ~l~--------------Rdr~ve~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aierWD~~ 325 (547)
+++ |||+||||||++|++|||+||.+|+++||++++++++||+||+|| |||+.||+||+|||.+
T Consensus 459 ~lsrWwk~~~l~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~~ 536 (727)
T 3pya_A 459 IFQKWYEENRLSEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIAN 536 (727)
T ss_dssp HHHHHHHHTTGGGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC--
T ss_pred hhheeHHhcCcccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcccc
Confidence 998 999999999999999999999999999999999999999999999 9999999999999974
Q ss_pred ---------hhcc---CChh--HHHHHHHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChH
Q 039366 326 ---------AIDQ---LPEY--MKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMD 391 (547)
Q Consensus 326 ---------~~~~---lPey--mk~~f~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~e 391 (547)
+++. +|+| ||+||.+|+|++||++.++.+++|.++.+|++++|.++++++++|++ + +
T Consensus 537 ~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~--------~ 607 (727)
T 3pya_A 537 ARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E--------G 607 (727)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C--------C
T ss_pred cccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c--------c
Confidence 3333 3877 99999999999999998777766668899999999999999999997 2 3
Q ss_pred HHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhCCC
Q 039366 392 EYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGA 471 (547)
Q Consensus 392 EYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~ 471 (547)
| |. +++.++.+..|..+++ ++.+ +.|..|.++++.||||+||+.+|++|+
T Consensus 608 E---------Ae-llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~------------------ 657 (727)
T 3pya_A 608 E---------GE-LMVKMIILMKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE------------------ 657 (727)
T ss_dssp H---------HH-HHHHHHHHHSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH------------------
T ss_pred c---------ee-eeeeeeecCCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH------------------
Confidence 3 11 3333333344888998 8877 899999999999999999999999976
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhccCCC--CCCHHHHHHHHHHhhhhhceeccCCCCCCCchhHHHHHHhhhccccC
Q 039366 472 TEEEACNEFRKQVSNAWKDINEDCLRPT--VLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVP 546 (547)
Q Consensus 472 S~EeA~~~i~~~I~~~wk~ln~e~l~~~--~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 546 (547)
.+++.+.|+..|++|++.+++++ .+|++| |++++++.||.. ||++|+ |..+|.+||++||-
T Consensus 658 -----~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf~~V~ksFYy~--ay~~p~--i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 658 -----KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TFLDVAKAFYYF--ALCGDH--LQTHISKVLFQKVG 720 (727)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HHHHHHHHHHHH--HHHTTS--CHHHHHHHHHSCCC
T ss_pred -----HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cHHHHHHHHHhh--hcCCHH--HHHHHHHHHcCccc
Confidence 45788999999999999999754 699999 888888888975 999995 99999999999983
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=1.1e-47 Score=398.62 Aligned_cols=225 Identities=16% Similarity=0.117 Sum_probs=208.7
Q ss_pred hhhHHHHHhhhhccccCCCchhHHH-HHHhhhhhhhhhhhhhccc--CCHHHHHHHHHHHhhccchhhccCChhHHHHHH
Q 039366 263 RDRIAECYFWILGVYFEPQYSFARR-ILTKVISMTSTIDDIYDVY--GKIEELELFTSAIKRWDISAIDQLPEYMKLCYR 339 (547)
Q Consensus 263 Rdr~ve~yfw~~~~~feP~~s~~Ri-~~aK~~~li~viDD~fD~y--gt~eEl~~ft~aierWD~~~~~~lPeymk~~f~ 339 (547)
|+|++++|||.++++|+|+++.+|+ ++||+++|+|++||+||.+ ||++|++.|++++.+|+.+ .+|+++++++.
T Consensus 42 r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee~~~~~~~l~~~~~~---~~p~~~~~~~~ 118 (337)
T 1ps1_A 42 AERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPEDTKQLTDQVAAALDG---PLPDTAPPIAH 118 (337)
T ss_dssp HHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHHHHHHHHHHHGGGTS---CCCTTSCHHHH
T ss_pred HHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHHcCC---CCCCCCChHHH
Confidence 9999999999999999999999999 9999999999999999998 6999999999999999864 47999999999
Q ss_pred HHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-ChHHHHhhhhcccchhHHHHHHHHhcCCCc
Q 039366 340 ALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIP-TMDEYMTVALVTSAYPMLSTTSFVGMGDIV 418 (547)
Q Consensus 340 al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vP-t~eEYl~~~~iS~g~~~~~~~~~~~~g~~l 418 (547)
++.+++++++.... .....++++.|+++++++++||+|+.+|++| |++|||++|++|+|++++++++++++|..+
T Consensus 119 ~l~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l 194 (337)
T 1ps1_A 119 GFADIWRRTCEGMT----PAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEV 194 (337)
T ss_dssp HHHHHHHHHHTTSC----HHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCC
Confidence 99999999976543 3457899999999999999999999999999 999999999999999999999999999999
Q ss_pred chhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 039366 419 TKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINEDC 495 (547)
Q Consensus 419 ~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~e~ 495 (547)
|++++++ +.+++|+++++.++||+|||+||+||+++|+++|+|.|||+++|+|+|+|++++.++|+++||+||++.
T Consensus 195 ~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~g~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 195 PHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp CHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 778899999999999999999999999999999999999999999999999999999999999999977
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=4.8e-46 Score=379.86 Aligned_cols=218 Identities=12% Similarity=0.083 Sum_probs=203.7
Q ss_pred hhhHHHHHhhhhccccCCCchhHHH-HHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhhccchhhccCChhHHHHHHHH
Q 039366 263 RDRIAECYFWILGVYFEPQYSFARR-ILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRAL 341 (547)
Q Consensus 263 Rdr~ve~yfw~~~~~feP~~s~~Ri-~~aK~~~li~viDD~fD~ygt~eEl~~ft~aierWD~~~~~~lPeymk~~f~al 341 (547)
|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+++|++.|++++.||+.+ +.+|+||++++.++
T Consensus 38 r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~~~~~~~~~~~--~~lp~~~~~~~~~l 114 (300)
T 1di1_A 38 VRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAYNNRLIPISRG--DVLPDRTKPEEFIL 114 (300)
T ss_dssp HHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHT--SSCCCTTCHHHHHH
T ss_pred HHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHccC--CCCCCCccHHHHHH
Confidence 9999999999999999999999999 999999999999999999 7899999999999999875 47899999999999
Q ss_pred HHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchh
Q 039366 342 LDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKE 421 (547)
Q Consensus 342 ~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~e 421 (547)
++++++++..+ + .+.++.|+.++++|+ ||+|+..|++||++|||++|++|+|++++++++++++|..+|++
T Consensus 115 ~d~~~~~~~~~-~-------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e 185 (300)
T 1di1_A 115 YDLWESMRAHD-A-------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSMGLRLSAD 185 (300)
T ss_dssp HHHHHHHHHHH-H-------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHhhC-h-------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHH
Confidence 99999998765 2 346677999999997 89999999999999999999999999999999999999999999
Q ss_pred HHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCC--------CcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 422 SFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGH--------VASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 422 v~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~--------~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
+++ .+++|+++++.++||+|||+||+||+++|+ ++|+|.|||+++|+|+|+|++++.++|+++|+++|+
T Consensus 186 ~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~ 262 (300)
T 1di1_A 186 ELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEESKLGIPATKRVLWSMTREWETVHDE 262 (300)
T ss_dssp HHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 998 469999999999999999999999999999 789999999999999999999999999999999998
Q ss_pred hc
Q 039366 494 DC 495 (547)
Q Consensus 494 e~ 495 (547)
..
T Consensus 263 ~~ 264 (300)
T 1di1_A 263 IV 264 (300)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=2.3e-44 Score=371.13 Aligned_cols=218 Identities=13% Similarity=0.090 Sum_probs=200.1
Q ss_pred hhhHHHHHhhhhccccCCCchhHHH-HHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhhccchhhccCChhHHHHHHHH
Q 039366 263 RDRIAECYFWILGVYFEPQYSFARR-ILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRAL 341 (547)
Q Consensus 263 Rdr~ve~yfw~~~~~feP~~s~~Ri-~~aK~~~li~viDD~fD~ygt~eEl~~ft~aierWD~~~~~~lPeymk~~f~al 341 (547)
|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+++|++.|++++.+|+.+ +.+|++|++++.++
T Consensus 52 r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~~~~~~~l~~~~~~--~~~p~~~~~~~~al 128 (320)
T 3bny_A 52 RKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEGSAYNEKLIPISRG--DVLPDRSIPVEYII 128 (320)
T ss_dssp HHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHT--SSCCCTTSHHHHHH
T ss_pred HHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhHHHHHHHHHHHhcC--CCCCCCcCHHHHHH
Confidence 9999999999999999999999999 999999999999999999 8899999999999999865 46899999999999
Q ss_pred HHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchh
Q 039366 342 LDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKE 421 (547)
Q Consensus 342 ~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~e 421 (547)
++++++++... + .+.++.|+.++ ++++|++|+..|++||++|||++|++|+|++++++++++++|..+|++
T Consensus 129 ~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e 199 (320)
T 3bny_A 129 YDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPS 199 (320)
T ss_dssp HHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHH
Confidence 99999998654 2 24455576777 599999999999999999999999999999999999999999999999
Q ss_pred HHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCC--------CcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 422 SFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGH--------VASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 422 v~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~--------~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
+++ .+++|+++++.++||+|||+||+||+++|+ ++|+|.|||+++|+|+|+|++++.++|++.|+++|+
T Consensus 200 ~~~---~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~ 276 (320)
T 3bny_A 200 ELQ---RVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQL 276 (320)
T ss_dssp HHH---HTHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 998 379999999999999999999999999998 789999999999999999999999999999999997
Q ss_pred hc
Q 039366 494 DC 495 (547)
Q Consensus 494 e~ 495 (547)
..
T Consensus 277 l~ 278 (320)
T 3bny_A 277 LV 278 (320)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=1.4e-43 Score=374.97 Aligned_cols=226 Identities=13% Similarity=0.003 Sum_probs=211.2
Q ss_pred hhhHHHHHhhhhccccCCCchhHHH-HHHhhhhhhhhhhhhhcc--cC-CHHHHHHHHHHHhhccchhhccCChhHHHHH
Q 039366 263 RDRIAECYFWILGVYFEPQYSFARR-ILTKVISMTSTIDDIYDV--YG-KIEELELFTSAIKRWDISAIDQLPEYMKLCY 338 (547)
Q Consensus 263 Rdr~ve~yfw~~~~~feP~~s~~Ri-~~aK~~~li~viDD~fD~--yg-t~eEl~~ft~aierWD~~~~~~lPeymk~~f 338 (547)
|+|+++||||.++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.|++++.++-.. ...+|+++++++
T Consensus 82 r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~~l~~-~~~~p~~~~p~~ 160 (382)
T 3kb9_A 82 EEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALDS-PGDHLHHEDTLV 160 (382)
T ss_dssp HHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHS-CGGGTTCSSHHH
T ss_pred HHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHHhcC-CCCCCCCCChHH
Confidence 9999999999999999999999999 999999999999999996 66 999999999999987222 223688999999
Q ss_pred HHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCc
Q 039366 339 RALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIV 418 (547)
Q Consensus 339 ~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l 418 (547)
.++.+++++++..+.+ ....+++++|++++++|++||+|+.+|++||++|||++|++|+|+.++++++++++|..+
T Consensus 161 ~al~dl~~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l 236 (382)
T 3kb9_A 161 AGFADSVRRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCEL 236 (382)
T ss_dssp HHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCC
Confidence 9999999999765443 248899999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 039366 419 TKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINED 494 (547)
Q Consensus 419 ~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~e 494 (547)
|++++++ +.+++|+++++.++||+|||+||+||+++|+++|+|.|||+++|+|+|+|++++.++|+++||+||+.
T Consensus 237 ~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v~~~i~~~~k~~~~~ 311 (382)
T 3kb9_A 237 PDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFLAV 311 (382)
T ss_dssp CHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 88899999999999999999999999999999999999999999999999999999999999999974
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.97 E-value=1.4e-31 Score=286.43 Aligned_cols=215 Identities=13% Similarity=0.125 Sum_probs=171.3
Q ss_pred hhccccCCCc-hhHHH-HHHhhhhhhhhhhhhh-cccC-CHHH-HHHHHH---HHhhccchhhccCCh-----hHHHHHH
Q 039366 273 ILGVYFEPQY-SFARR-ILTKVISMTSTIDDIY-DVYG-KIEE-LELFTS---AIKRWDISAIDQLPE-----YMKLCYR 339 (547)
Q Consensus 273 ~~~~~feP~~-s~~Ri-~~aK~~~li~viDD~f-D~yg-t~eE-l~~ft~---aierWD~~~~~~lPe-----ymk~~f~ 339 (547)
.++.+| |.. +..|+ ..+|++.|+|++||.| |..| +.+. ...+.. ++..... ..+.-|. .-..+-.
T Consensus 162 laa~~y-P~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~~~~d~l~~-~~~g~p~~~~~~~~dp~~~ 239 (433)
T 3v1v_A 162 YMVGCH-PDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAHTAIDHFHS-TAEYTPTWQASLAADAPRR 239 (433)
T ss_dssp HHHHHC-TTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHHTTTSCCCC-CTTTHHHHHHHTTSSHHHH
T ss_pred HHHHhC-CCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHHHHHHhhhc-ccCCCCccccccCCchHHH
Confidence 344445 888 78888 8999999999999995 9755 3332 112222 2221110 0000010 0124578
Q ss_pred HHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcc
Q 039366 340 ALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVT 419 (547)
Q Consensus 340 al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~ 419 (547)
+++++++++.+.+.+ ....++++.|++|+++|++||+|+..|++||++|||++|++| |+.+++.++.+++|..+|
T Consensus 240 al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp 314 (433)
T 3v1v_A 240 AYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFN-NFRPCPTITDTVGGYELP 314 (433)
T ss_dssp HHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCC
T ss_pred HHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCC
Confidence 999999999876554 348899999999999999999999999999999999999999 677777778888999999
Q ss_pred hhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcC-CCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 039366 420 KESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRG-HVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINEDC 495 (547)
Q Consensus 420 ~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG-~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~e~ 495 (547)
++++++ +.+++|+++++.++||+|||+||+||+++| +++|+|.|||+++|+|+|+|++++.+||++.+++|.+..
T Consensus 315 ~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 315 ADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAEREQLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp HHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 778899999999999999999999999995 789999999999999999999999999999999988643
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.68 E-value=1.4e-16 Score=167.32 Aligned_cols=208 Identities=11% Similarity=0.042 Sum_probs=158.2
Q ss_pred hhhHHHHHhhhhccccCCCchhHHH-HHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhhccchhhccCChhHHHHHHHH
Q 039366 263 RDRIAECYFWILGVYFEPQYSFARR-ILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRAL 341 (547)
Q Consensus 263 Rdr~ve~yfw~~~~~feP~~s~~Ri-~~aK~~~li~viDD~fD~ygt~eEl~~ft~aierWD~~~~~~lPeymk~~f~al 341 (547)
.++.+.+=.|.++..| |..+...+ .++++.+|+|++||.+|..+ +++..|.+.+-+ .. . |+ .++..++
T Consensus 63 l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~~l~~~~~~ll~--G~-~---~~--~Pl~~al 131 (374)
T 1yyq_A 63 LQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--PTMVNYFDDLQA--GR-E---QA--HPWWALV 131 (374)
T ss_dssp HHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--HHHTTHHHHHHH--TC-C---CS--SHHHHHH
T ss_pred HHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--HHHHHHHHHHhc--CC-C---CC--ChHHHHH
Confidence 3455555566666667 88888877 88999999999999999654 666767766543 11 1 11 2566777
Q ss_pred HHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchh
Q 039366 342 LDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKE 421 (547)
Q Consensus 342 ~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~e 421 (547)
.+.+.++...+ +.....++.+.|.+++.+++.|+.. .+..|+.++|...++.++|+.-.... -.+|..
T Consensus 132 ~dl~~rl~~~~----~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~~~Y~~~rR~~sG~~E~~~~------~~~P~~ 199 (374)
T 1yyq_A 132 NEHFPNVLRHF----GPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGA------SLWPKE 199 (374)
T ss_dssp HHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHHHTTC--CCCCTTCTTHHHHHHHHHHCHHHHHH------TTCCTT
T ss_pred HHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHhhccHHHHHHH------hhcccc
Confidence 77777775443 3356889999999999999999863 67789999999998888887543322 223443
Q ss_pred HHh---hhcchhHHHHHHHHHHHHccCCcChHHhhhc-CCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 422 SFE---WLFSNPRFIRASSVVCRLMDDMASHEFEQSR-GHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 422 v~e---~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~r-G~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
++. ..+.+..++.....++.|+|||.||.||... |+.+|+|.+++.++|+|.++|++++..++..+..++-.
T Consensus 200 ~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~~g~S~~eAl~~v~~~~~~~~~r~~~ 275 (374)
T 1yyq_A 200 QFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVA 275 (374)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 331 1244566777788899999999999999984 99999999999999999999999999999988888755
No 17
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.97 E-value=0.0002 Score=81.85 Aligned_cols=46 Identities=28% Similarity=0.470 Sum_probs=27.5
Q ss_pred ccCCCCCCCCCCCccCccccCCCCcchhhhHHHHHHHHHHHHHHhh
Q 039366 21 STRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLK 66 (547)
Q Consensus 21 ~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~ 66 (547)
+.||+|||+||+|+++|+++.......+.+.+++++|+++||+||.
T Consensus 23 ~~Rrsany~Ps~W~~~~i~sl~~~~~~~~~~~~~~~Lie~VK~~l~ 68 (817)
T 3sdr_A 23 LIRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLN 68 (817)
T ss_dssp ------------CHHHHHHTCCCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCCCeeeccCCcccchhHHHHHHHHHHHHHHHhc
Confidence 4799999999999999998543322556778999999999999996
No 18
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=88.51 E-value=21 Score=35.42 Aligned_cols=183 Identities=14% Similarity=0.170 Sum_probs=96.1
Q ss_pred hchHHHHHHHHHHhhhhhhhhHHHHHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCC--HHHHHHHHHHHhhc
Q 039366 245 LDFNKLQKLHQKELGDISRDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGK--IEELELFTSAIKRW 322 (547)
Q Consensus 245 ldFn~~Q~~hq~EL~~l~Rdr~ve~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt--~eEl~~ft~aierW 322 (547)
-||+.|+.+-++- -++|+|+.-... |+ .|..+.-+-.|.=.+||+-|.... ...|+.+-+.+++.
T Consensus 13 ~~y~~C~~i~~~~---------~~sF~~a~~~lp-~~---~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~ 79 (294)
T 4hd1_A 13 GDFEVCRRLTRSH---------YENFSVVSLFVP-RH---LRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRA 79 (294)
T ss_dssp HHHHHHHHHHHHH---------CTTHHHHTTTCC-TT---THHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---------CCcHHHHHHHCC-HH---HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Confidence 4677776554322 347776654333 32 354445666778889999996542 23344444444332
Q ss_pred cchhhccCChhHHHHHHHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccc
Q 039366 323 DISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSA 402 (547)
Q Consensus 323 D~~~~~~lPeymk~~f~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g 402 (547)
...-|. -+++.+|.+++.+.. ++ ++.+.+++.++..... ....+|++|+......+.|
T Consensus 80 ----~~g~~~--~pv~~al~~~~~~~~--l~-----------~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg 137 (294)
T 4hd1_A 80 ----FAGEAT--TPAFRALQFTIATCN--LP-----------MEPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSAD 137 (294)
T ss_dssp ----HHTCCC--SHHHHHHHHHHHHHT--CC-----------SHHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTH
T ss_pred ----hcCCCC--CHHHHHHHHHHHHcC--CC-----------HHHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccc
Confidence 111232 267888887776641 11 2334556667654433 3456898888888777776
Q ss_pred hhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCC--cchhhHHHhhCCCCHHH
Q 039366 403 YPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHV--ASSVECYMKQHGATEEE 475 (547)
Q Consensus 403 ~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~--~n~V~cyMke~g~S~Ee 475 (547)
.--.+++-.++.. +++..... ..+- .+-.++-++.|+ ....++|-+ +. -.|.++|+|.++
T Consensus 138 ~VG~m~~~i~g~~---~~~~~~~A---~~lG-~AlQltNilRDv---~eD~~~gR~YlP~---~~l~~~gv~~~d 199 (294)
T 4hd1_A 138 PVGRLVLGIFGCL---DDERARLS---DATC-TALQVANHMQDI---DRDLALGRIYVPR---ADLEQFGATLDD 199 (294)
T ss_dssp HHHHHHHHHTTCC---SHHHHHHH---HHHH-HHHHHHHHHHTH---HHHHHTTCBCSCH---HHHHTTTCCHHH
T ss_pred hHHHHHHHHhCCC---CHHHHHHH---HHHH-HHHHHHHHHHhc---hhhhccCceeCCH---HHHHHcCCCHHH
Confidence 6555444444332 22332221 1111 112233333444 344556653 32 346788998765
No 19
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=88.03 E-value=22 Score=35.13 Aligned_cols=188 Identities=15% Similarity=0.176 Sum_probs=102.0
Q ss_pred HHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhhc-cchhh--ccCChhHHHHHHHHHHHH
Q 039366 269 CYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRW-DISAI--DQLPEYMKLCYRALLDVY 345 (547)
Q Consensus 269 ~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aierW-D~~~~--~~lPeymk~~f~al~~~~ 345 (547)
+|++++-.. |. ..|..+.-+-.|.-.+||+-|......+|+.+.+.+++- +.... ...|. .++..+|.+++
T Consensus 27 sF~~a~~~L--p~--~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~ 100 (293)
T 3acx_A 27 SFSYAFDLL--PE--DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVA 100 (293)
T ss_dssp HHHHHHTTS--CH--HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHH
T ss_pred cHHHHHHhC--CH--HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHH
Confidence 666555433 32 456666677888889999999766544455555555431 11100 00022 36777777766
Q ss_pred HHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhh
Q 039366 346 SEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEW 425 (547)
Q Consensus 346 ~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~ 425 (547)
.+. +.. ++.+.+++.++-. +......+|++|+..+...+.|.--.+++-.++... .++..+.
T Consensus 101 ~~~--------~l~-----~~~~~~li~g~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~--~~~~~~~ 162 (293)
T 3acx_A 101 QHK--------NIA-----FQSFYNLIDTVYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE--THQTYDV 162 (293)
T ss_dssp HHS--------CCC-----HHHHHHHHHHHHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC--CHHHHHH
T ss_pred HHh--------CCC-----HHHHHHHHHHHHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC--cHHHHHH
Confidence 543 111 2345666666653 334456789999988888887766655555454321 1222222
Q ss_pred hcchhHHHHHHHHHHH---HccCCcChHHhhhcCCC--cchhhHHHhhCCCCHHH---------HHHHHHHHHHHHHHHH
Q 039366 426 LFSNPRFIRASSVVCR---LMDDMASHEFEQSRGHV--ASSVECYMKQHGATEEE---------ACNEFRKQVSNAWKDI 491 (547)
Q Consensus 426 ~~~~~~l~~~~~~i~R---L~NDI~S~kkE~~rG~~--~n~V~cyMke~g~S~Ee---------A~~~i~~~I~~~wk~l 491 (547)
....+.-.- ++-|+ .....+|-+ +.- -|.++|++.++ ..+-+..++..+..-+
T Consensus 163 -------A~~lG~AlQltNilRDv---~eD~~~gR~YLP~d---~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~ 229 (293)
T 3acx_A 163 -------ARRLGESLQLINILRDV---GEDFENERIYFSKQ---RLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDF 229 (293)
T ss_dssp -------HHHHHHHHHHHHHHHCH---HHHHHTTCCCSCHH---HHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHH---HHHHhCCcEEeCHH---HHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 222222222 33454 344556643 322 35678998766 2234556666666555
Q ss_pred hh
Q 039366 492 NE 493 (547)
Q Consensus 492 n~ 493 (547)
.+
T Consensus 230 ~~ 231 (293)
T 3acx_A 230 RD 231 (293)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 20
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=87.30 E-value=24 Score=35.80 Aligned_cols=86 Identities=9% Similarity=0.065 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHHhhhcchhHHHHHH
Q 039366 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESFEWLFSNPRFIRAS 436 (547)
Q Consensus 359 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~ 436 (547)
..+..+.+.+..++.+-..+..|.. ...||.++|+..-..-+|..+..++.. ...| .+++..+. ...+....
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~l 206 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ--VGEEEVAF---ARLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 4577788889999999999988864 335899999998777666654433221 1222 35555443 35677888
Q ss_pred HHHHHHccCCcChH
Q 039366 437 SVVCRLMDDMASHE 450 (547)
Q Consensus 437 ~~i~RL~NDI~S~k 450 (547)
+...-+.||+..+.
T Consensus 207 G~aFQi~DD~ld~~ 220 (334)
T 3rmg_A 207 GICFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccCC
Confidence 88999999987775
No 21
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=85.85 E-value=5.5 Score=41.06 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=68.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHHhhhcchhHHHHHH
Q 039366 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESFEWLFSNPRFIRAS 436 (547)
Q Consensus 359 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~ 436 (547)
..+..+.+++..++.+-+.+..|.... ||.++|++.-..-+|..+..++.. ...| .+++..+. ..++-...
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag--a~~~~~~~---l~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG--AAPEHIDA---LKNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 357778888999999999999997655 999999988776666554433221 2223 45555544 35667888
Q ss_pred HHHHHHccCCcChHHh-----------hhcCCCcchhhHHHhhC
Q 039366 437 SVVCRLMDDMASHEFE-----------QSRGHVASSVECYMKQH 469 (547)
Q Consensus 437 ~~i~RL~NDI~S~kkE-----------~~rG~~~n~V~cyMke~ 469 (547)
+..+-+.||+..+.-. ...|.. ++..+|.-+.
T Consensus 233 G~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~-Tlp~l~al~~ 275 (360)
T 3lmd_A 233 GMIFQIVDDIIDIFSETHESGKTPGTDLREGVF-TLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHHHC--------CCHHHHHTCC-CHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCChhhhCCCchhHHhcCCc-hHHHHHHHHc
Confidence 8888899998766432 233443 6666665444
No 22
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=84.11 E-value=39 Score=34.37 Aligned_cols=87 Identities=15% Similarity=0.102 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHHhhhcchhHHHHHH
Q 039366 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESFEWLFSNPRFIRAS 436 (547)
Q Consensus 359 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~ 436 (547)
..+..+.++...++.+-+.+..|.. +..||.++|+..-..-+|..+..++.. ...| .+++..+. ...+-+..
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~l 224 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAASEAGAVSAG--VDVAKSEA---LRDYGLNL 224 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 4567788888899999998888854 345899999988777666654433222 1223 45555544 35677888
Q ss_pred HHHHHHccCCcChHH
Q 039366 437 SVVCRLMDDMASHEF 451 (547)
Q Consensus 437 ~~i~RL~NDI~S~kk 451 (547)
+...-+.||+..+..
T Consensus 225 G~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 225 GLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHhccC
Confidence 899999999987753
No 23
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=83.44 E-value=5 Score=40.21 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHHhhhcchhHHHHHHH
Q 039366 360 RLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESFEWLFSNPRFIRASS 437 (547)
Q Consensus 360 ~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~~ 437 (547)
.+..+.++....+.+-..+..|... .||.++|+..-..-+|..+..+... ...| .+++..+. ..++-+..+
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag--~~~~~~~~---l~~~g~~lG 200 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISASIGAYTGG--AEEELAER---FSHFGNALG 200 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 4666777778888888888888643 4899999987766666554332221 1123 35555444 356778888
Q ss_pred HHHHHccCCcChHHhh-----hcCCCcchhhHHHhhCCC--CHHHHHHHHHHHHHHHHHHHhhhccCCCCCCH-HHHHHH
Q 039366 438 VVCRLMDDMASHEFEQ-----SRGHVASSVECYMKQHGA--TEEEACNEFRKQVSNAWKDINEDCLRPTVLPM-PLLMRI 509 (547)
Q Consensus 438 ~i~RL~NDI~S~kkE~-----~rG~~~n~V~cyMke~g~--S~EeA~~~i~~~I~~~wk~ln~e~l~~~~~p~-~~~~~~ 509 (547)
...-+.||+..+.... ..|. .++..+|..+.+- ..+.|.+.+.+.++++.+.+.. +|. +-++..
T Consensus 201 laFQI~DDilD~~~~~~gkd~~~gk-~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~~-------lp~~~~~~~L 272 (295)
T 3ipi_A 201 TAYQIVDDILEFLEVVEGKESKFTS-ETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLET-------FRECPARDKL 272 (295)
T ss_dssp HHHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-------SCCSHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCCCcccCc-ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHh-------CCCchHHHHH
Confidence 8999999998775433 2233 3677777655431 1455555555556656555432 443 445555
Q ss_pred HHHhhhh
Q 039366 510 LNLTRVI 516 (547)
Q Consensus 510 lN~aR~~ 516 (547)
.++++.+
T Consensus 273 ~~l~~~~ 279 (295)
T 3ipi_A 273 FQITDYI 279 (295)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 5555433
No 24
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=71.64 E-value=90 Score=31.58 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHHhhhcchhHHHHHH
Q 039366 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESFEWLFSNPRFIRAS 436 (547)
Q Consensus 359 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~ 436 (547)
..+..+.++....+.+-+.+..|.. +..||.++|+..-..-+|..+..++.. ...| .+++..+. ...+-...
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~l 212 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIGG--APEDQVQA---LFDYGDAL 212 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 4567788888899999999988864 346899999987766666554333221 1123 35554443 35677888
Q ss_pred HHHHHHccCCcChH
Q 039366 437 SVVCRLMDDMASHE 450 (547)
Q Consensus 437 ~~i~RL~NDI~S~k 450 (547)
+...-+.||+..+.
T Consensus 213 G~aFQI~DD~ld~~ 226 (341)
T 3mzv_A 213 GIAFQIVDDLLDYG 226 (341)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcc
Confidence 88888999987664
No 25
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=71.61 E-value=16 Score=36.58 Aligned_cols=110 Identities=12% Similarity=0.059 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHH--HHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCC
Q 039366 369 KNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTT--SFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDM 446 (547)
Q Consensus 369 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~--~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 446 (547)
..++.+-..+..|...+..||.++|+..-..-+|..+..+. .-...| .+++ ...++-...+...-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~------~l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRG------PLTAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH------HHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHH------HHHHHHHHHHHHHHHHHHH
Confidence 45777878888887656789999999975554444433221 112223 2333 1246678888999999999
Q ss_pred cChHHhh-----------hcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 447 ASHEFEQ-----------SRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 447 ~S~kkE~-----------~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
..+.-+. ..|.. +++.+| ..|.|.+.+.+.++++...+..
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKA-TFVSLL------GLAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp C---------------------C-CHHHHH------CSSHHHHHHHHHHHHHHHHTGG
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8775432 22222 555444 3577888888888888877654
No 26
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=70.59 E-value=31 Score=34.91 Aligned_cols=111 Identities=7% Similarity=0.070 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHh--cCCCcchhHHhhhcchhHHHHHHHHHHHHccCC
Q 039366 369 KNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVG--MGDIVTKESFEWLFSNPRFIRASSVVCRLMDDM 446 (547)
Q Consensus 369 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 446 (547)
..++.+-..+..|... .||.++|+..-..-+|..+..+. ..| ++...+++..+. ..++-+..+...-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a~-~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRASV-RLACLARPGLPAEQFDR---LDHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHH-HHHHTTSTTCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHHH-HHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4567777777777543 78999999985554444433222 222 222145555544 356677888888899998
Q ss_pred cChHHh-----------hhcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 039366 447 ASHEFE-----------QSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDIN 492 (547)
Q Consensus 447 ~S~kkE-----------~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln 492 (547)
..+..+ ...|.. +++.+| ..|.|.+.+.+.++++...+.
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 766432 222332 555554 478889888888888876554
No 27
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=70.45 E-value=42 Score=33.18 Aligned_cols=120 Identities=8% Similarity=-0.036 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHHhhhcchhHHHHHHH
Q 039366 360 RLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESFEWLFSNPRFIRASS 437 (547)
Q Consensus 360 ~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~~ 437 (547)
.+..+.++...++.+-..+..|......||.++|+..-..-+|..+..++.. ...| .+++ ...++-...+
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~------~l~~~g~~lG 206 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--XDHT------XMXLLGEXFG 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CChh------HHHHHHHHHH
Confidence 5667777788999999999999765447899999998776666554332211 2223 2333 2246778888
Q ss_pred HHHHHccCCcChHHhh-hcCC-------CcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 438 VVCRLMDDMASHEFEQ-SRGH-------VASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 438 ~i~RL~NDI~S~kkE~-~rG~-------~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
...-+.||+..+.-.. .-|+ -.+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 207 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 207 VAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999998876542 2232 12444333 3688899999999999888765
No 28
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=67.85 E-value=21 Score=35.66 Aligned_cols=112 Identities=12% Similarity=0.078 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhc--CCCcchhHHhhhcchhHHHHHHHHHHHHccCC
Q 039366 369 KNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGM--GDIVTKESFEWLFSNPRFIRASSVVCRLMDDM 446 (547)
Q Consensus 369 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~--g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 446 (547)
..++.+-..+..|. +..||.++|+..-..-+|..+..+. ..|+ +...+++..+. ..++-...+...-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~~-~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCAI-RLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHHH-HHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 35677777787886 3578999999986544444433222 2221 21123333333 356777888888899998
Q ss_pred cChHHh-----------hhcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 447 ASHEFE-----------QSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 447 ~S~kkE-----------~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
..+.-+ ...|.. +.+.+| ..+.|.+.+.+.++++.+.++.
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKS-TYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHTTC---------------CC-CHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHhCCCcchHHhcCCc-hHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 766432 122332 555554 3688888899999988877654
No 29
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=66.54 E-value=22 Score=35.50 Aligned_cols=111 Identities=8% Similarity=0.041 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCC
Q 039366 369 KNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDM 446 (547)
Q Consensus 369 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 446 (547)
..++.+-..+..|... .+|.++|+..-..-+|..+..++.. ...| .+++..+. ..++-...+...-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN--VDDTTKEH---LESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5567777777777543 7899999998777666554332221 1223 45555544 356778889999999999
Q ss_pred cChHHhh-----------hcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 447 ASHEFEQ-----------SRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 447 ~S~kkE~-----------~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
..+.-.. ..|. .+.+.+|. .+.|.+.+.+.++++.+.+..
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK-~T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNK-STYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHCC--------------CCHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHhCCCcchHHHcCC-CcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 8775432 2233 25555543 578888888888888877654
No 30
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=65.39 E-value=39 Score=33.80 Aligned_cols=111 Identities=9% Similarity=0.038 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHh--cCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcC
Q 039366 371 IVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVG--MGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMAS 448 (547)
Q Consensus 371 ~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S 448 (547)
++.+-..+..|... .||.++|+..-..-+|..+..++ ..| ++...+++..+. ..++-...+...-+.||+..
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~~-~~ga~lag~~~~~~~~~---l~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEASV-ILGALASGRAEKGELKA---LQTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 66777777777543 48999999885444444333222 222 122115555544 35677888899999999987
Q ss_pred hHHhh-hcCC-----C----cchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 449 HEFEQ-SRGH-----V----ASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 449 ~kkE~-~rG~-----~----~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
+.-+. .-|. . .+++.+| ..|.|.+.+.+.++++.+.++.
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 276 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALRP 276 (304)
T ss_dssp HHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 75432 1222 1 2555554 4788999999988888876543
No 31
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=65.38 E-value=31 Score=34.48 Aligned_cols=111 Identities=11% Similarity=0.042 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCC
Q 039366 369 KNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDM 446 (547)
Q Consensus 369 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 446 (547)
..++.+-..+..|.. ..||.++|...-..-+|..+..+... ...| .+++..+. ..++-...+...-+.||+
T Consensus 156 ~~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~~~~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~DDi 228 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIEFALIAGGVLAN--QTEEVIGL---LTQFAHHYGLAFQIRDDL 228 (302)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 345667666667753 46899999987544444333322211 1122 35555444 356777888888899998
Q ss_pred cChHHh-----------hhcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 447 ASHEFE-----------QSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 447 ~S~kkE-----------~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
..+.-+ ...|.. ++..+| ..+.|.+.+.+.++++.+.++.
T Consensus 229 lD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 229 LDATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 766322 222332 455443 4788999999999999888765
No 32
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=65.20 E-value=48 Score=33.53 Aligned_cols=102 Identities=12% Similarity=0.114 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHHhhhcchhHHHHHHH
Q 039366 360 RLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESFEWLFSNPRFIRASS 437 (547)
Q Consensus 360 ~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~~ 437 (547)
.+..+.++...++.+-..+..|.... ..|.++|++.-..-+|..+..++.. ...| .+++..+. ..++-...+
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG 211 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGT--DNEEYIKA---LSSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 46667778888999999999997543 4599999998777666655433222 1123 35555544 356778888
Q ss_pred HHHHHccCCcChHHh-----------hhcCCCcchhhHHHhh
Q 039366 438 VVCRLMDDMASHEFE-----------QSRGHVASSVECYMKQ 468 (547)
Q Consensus 438 ~i~RL~NDI~S~kkE-----------~~rG~~~n~V~cyMke 468 (547)
...-+.||+..+.-+ ...|.. +...+|.-+
T Consensus 212 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~-Tlp~i~al~ 252 (342)
T 1wy0_A 212 IAFQIWDDVLDLIADEKKLGKPVGSDIRKGKK-TLIVAHFFE 252 (342)
T ss_dssp HHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCC-CHHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhhCCCchhHHhCCCC-cHHHHHHHH
Confidence 999999999776432 223443 666666554
No 33
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=63.68 E-value=34 Score=34.68 Aligned_cols=87 Identities=18% Similarity=0.132 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHH--HHhcCCCcchhHHhhhcchhHHHHHH
Q 039366 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTS--FVGMGDIVTKESFEWLFSNPRFIRAS 436 (547)
Q Consensus 359 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~--~~~~g~~l~~ev~e~~~~~~~l~~~~ 436 (547)
..+..+.+....++.+-+.+..|... ..+|.++|+..-..-+|..+..++. -...| .+++..+. ..++-...
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~l 226 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLTG--QTAEVAVL---AFEYGRNL 226 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--cCHHHHHH---HHHHHHHH
Confidence 35667778888888888877776432 3579999999865555444433221 12223 35555443 35667788
Q ss_pred HHHHHHccCCcChHH
Q 039366 437 SVVCRLMDDMASHEF 451 (547)
Q Consensus 437 ~~i~RL~NDI~S~kk 451 (547)
+...-+.||+..+.-
T Consensus 227 G~aFQi~DD~lD~~g 241 (348)
T 3apz_A 227 GLAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccC
Confidence 888889999877653
No 34
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=61.81 E-value=78 Score=31.90 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHHhhhcchhHHHHHHH
Q 039366 360 RLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESFEWLFSNPRFIRASS 437 (547)
Q Consensus 360 ~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~~ 437 (547)
.+..+.+....++.+-+.+..|.. +..||.++|++.-..-+|..+..++.. ...| .+++..+. ...+-...+
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG 217 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALSCYQGAQLAG--APQSVIDR---TRDIGIAIG 217 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 466677888888888888877754 346899999987655555544332211 1123 35555544 345667777
Q ss_pred HHHHHccCCcChH-----------HhhhcCCCcchhhHHHhh
Q 039366 438 VVCRLMDDMASHE-----------FEQSRGHVASSVECYMKQ 468 (547)
Q Consensus 438 ~i~RL~NDI~S~k-----------kE~~rG~~~n~V~cyMke 468 (547)
...-+.||+..+. .....|.. ++..+|.-+
T Consensus 218 ~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 218 CAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 7888888876543 23445554 666666554
No 35
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=60.12 E-value=44 Score=34.13 Aligned_cols=105 Identities=12% Similarity=0.132 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----------CCC-CCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHHhhh
Q 039366 360 RLHYAKKAMKNIVKNYFFEAKWCH----------QNY-IPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESFEWL 426 (547)
Q Consensus 360 ~~~~l~~~w~~~~~a~l~EAkW~~----------~g~-vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~ 426 (547)
.+..+.++...++.+-..+..|.. .+. .||.++|+..-..-+|..+..++.. ...| .+++..+.
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~- 209 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVS--DDRGLAEA- 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHH-
Confidence 466788888999999999999972 223 6799999998776666554433221 1123 34555443
Q ss_pred cchhHHHHHHHHHHHHccCCcChHH-----------hhhcCCCcchhhHHHhhC
Q 039366 427 FSNPRFIRASSVVCRLMDDMASHEF-----------EQSRGHVASSVECYMKQH 469 (547)
Q Consensus 427 ~~~~~l~~~~~~i~RL~NDI~S~kk-----------E~~rG~~~n~V~cyMke~ 469 (547)
..++-...+...-+.||+..+.- +...|...++..+|.-+.
T Consensus 210 --l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~ 261 (358)
T 4dhd_A 210 --AWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSH 261 (358)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHh
Confidence 35667788888888898876632 233344435555555443
No 36
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=59.71 E-value=38 Score=34.38 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCC
Q 039366 369 KNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDM 446 (547)
Q Consensus 369 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 446 (547)
..++.+-..+..|... .+|.++|+..-..-+|..+..+... ...| .+++..+. ..++-...+...-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQR---LRLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5567777778888654 6899999998877666554332221 2223 45555544 356778888899999998
Q ss_pred cChHHh-----------hhcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 447 ASHEFE-----------QSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 447 ~S~kkE-----------~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
..+.-+ ...|.. +++.+| ..|.|.+.+.+.++++.+.+..
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKG-TLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHC-----------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHhcCCHHHhCCCcchHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 776432 122332 555444 3688899999999988877654
No 37
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=59.67 E-value=50 Score=33.13 Aligned_cols=113 Identities=11% Similarity=0.081 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCC-cchhHHhhhcchhHHHHHHHHHHHHccCCc
Q 039366 369 KNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDI-VTKESFEWLFSNPRFIRASSVVCRLMDDMA 447 (547)
Q Consensus 369 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~-l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~ 447 (547)
...+.+-..+..|... ..||.++|+..-..-+|..+..+.....++.. .+++..+. ..++-...+...-+.||+.
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~---l~~~g~~lGlaFQI~DDil 233 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSA---LRTYGKHIGLVFQMQDDYL 233 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3566777777777543 37899999987654444433322222223322 46665544 3567788888899999987
Q ss_pred ChHHh-----------hhcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 039366 448 SHEFE-----------QSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDIN 492 (547)
Q Consensus 448 S~kkE-----------~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln 492 (547)
.+.-+ ...|.. +.+.+| ..+.|.+.+.+.++++.+.+.
T Consensus 234 D~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 234 DLYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 66432 122332 555443 478899999998888886654
No 38
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=57.57 E-value=38 Score=34.07 Aligned_cols=111 Identities=12% Similarity=0.088 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHh--cCCCcchhHHhhhcchhHHHHHHHHHHHHccCCc
Q 039366 370 NIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVG--MGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMA 447 (547)
Q Consensus 370 ~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~ 447 (547)
.++.+-..+..|. +..||.++|+..-..-+|..+..+. ..| ++...+++..+. ..++-+..+...-+.||+.
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~~Ga~lag~a~~~~~~~---l~~~g~~lGlAFQI~DDiL 225 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKASV-RMGALSTGQVKPEQLAK---LDAYAHAIGLAFQVQDDII 225 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHHH-HHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4667777777775 3458999999886544444333222 222 222245555543 3567788888899999987
Q ss_pred ChHHh-----------hhcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 448 SHEFE-----------QSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 448 S~kkE-----------~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
.+.-+ ...|. .+++.+| ..|.|.+.+.+.++++.+.+..
T Consensus 226 D~~gd~~~~GK~~g~Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 226 DLTSDTETLGKTQFSDAEANK-ATYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HTC----------------CC-CCHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred hccCChHhhCCCcchHHhcCC-CcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 66432 22233 2566554 3788999999999999887764
No 39
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=53.96 E-value=55 Score=32.79 Aligned_cols=110 Identities=5% Similarity=-0.024 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHH--HHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCCc
Q 039366 370 NIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTS--FVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMA 447 (547)
Q Consensus 370 ~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~--~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~ 447 (547)
.++.+-..+..|. +..||.++|...-..-+|..+..+.. -...| .+++..+. ..++-...+...-+.||+.
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQ--APEAQWPA---YLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCGGGHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4556666666764 34689999998854444443332221 11123 34444433 3567778888888999987
Q ss_pred ChHHh-----------hhcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 448 SHEFE-----------QSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 448 S~kkE-----------~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
.+.-. ...|.. +.+.+| ..+.|.+..+++++++.+.+..
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 66422 222332 555443 3678888888989988877654
No 40
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=53.14 E-value=10 Score=27.75 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhccCCcccchhhHHHHHHh
Q 039366 52 AKHQELKEEIRRMLKINKPSQNNLDLIDAIQRL 84 (547)
Q Consensus 52 ~~~~~lk~~v~~~l~~~~~~~~~l~liD~lqrL 84 (547)
+++.=|.+|||+-|..+.+.++++-.+.+||-|
T Consensus 16 EeIRwlIeE~Rh~Lk~TensfeQItfmqalQLl 48 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKITENSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 556668899999999888999999999999864
No 41
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=50.85 E-value=68 Score=32.31 Aligned_cols=112 Identities=8% Similarity=0.008 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCC
Q 039366 369 KNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDM 446 (547)
Q Consensus 369 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 446 (547)
..++.+-..+..|... ..||.++|+..-..-+|..+..++.. ...| .+++..+. ..++-...+...-+.||+
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~DDi 253 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKASIMSGAVLAE--ASEGDIKK---LEGFGYKLGLAFQIKDDI 253 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3567777777777543 36899999998544334333322211 1122 35555444 356777888888899998
Q ss_pred cChHHh-----------hhcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 447 ASHEFE-----------QSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 447 ~S~kkE-----------~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
..+.-+ ...|.. +...+| ..+.|.+.+.+.++++.+.+..
T Consensus 254 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 254 LDVVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 766322 222332 455443 3789999999999999887765
No 42
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=49.18 E-value=45 Score=33.41 Aligned_cols=112 Identities=15% Similarity=0.222 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHH-hhhcchhHHHHHHHHHHHHccC
Q 039366 369 KNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESF-EWLFSNPRFIRASSVVCRLMDD 445 (547)
Q Consensus 369 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~-e~~~~~~~l~~~~~~i~RL~ND 445 (547)
...+.+-..+..|. +..||.++|+..-..-+|..+..++.. +..| .+++.. +. ..++.+..+...-+.||
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag--a~~~~~~~~---l~~~g~~lGlaFQI~DD 231 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG--IKDEELFKW---LQAFGLKMGLCFQVLDD 231 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45667767677775 457899999988555444443322211 1123 344444 33 35677888888999999
Q ss_pred CcChHHh-hhcCCCc-------chhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 446 MASHEFE-QSRGHVA-------SSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 446 I~S~kkE-~~rG~~~-------n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
+..+.-+ ..-|+.. +.+.++ ..+.|.+..+++++++.+.+..
T Consensus 232 iLD~~gd~~~~GK~~g~~~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 232 IIDVTQDEEESGKTTHLDSAKNSFVNLL------GLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHC-------------CCSCHHHHH------CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccCChHHHCcccccccCcchHHHHH------HHHHHHHHHHHHHHHHHHHhhh
Confidence 9777543 2233321 333222 3688888888888888877653
No 43
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=49.15 E-value=85 Score=31.05 Aligned_cols=113 Identities=7% Similarity=0.073 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcC-CCcchhHHhhhcchhHHHHHHHHHHHHccCCc
Q 039366 369 KNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMG-DIVTKESFEWLFSNPRFIRASSVVCRLMDDMA 447 (547)
Q Consensus 369 ~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g-~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~ 447 (547)
..++.+-..+..|... .+|.++|+..-..-+|..+..++..-++= -..+++..+. ..++-...+...-+.||+.
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~---l~~~g~~lG~aFQi~DD~l 226 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPV---LDKYAESIGLAFQVQDDIL 226 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4567777777777543 68999999987655555443322211110 1134444443 3567788888999999987
Q ss_pred ChHHhh-----------hcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 448 SHEFEQ-----------SRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 448 S~kkE~-----------~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
.+.-.. ..|.. +...+| ..+.|.+.+.+.++++.+.+..
T Consensus 227 D~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 227 DVVGDTATLGKRQGADQQLGKS-TYPALL------GLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHSCHHHHSSCTTHHHHHTCC-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCChhhHHHcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 764322 22332 555444 2577888888889988888765
No 44
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=48.73 E-value=1.1e+02 Score=30.14 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHh--cCCCcchhHHhhhcchhHHHHHHHHHHHHccC
Q 039366 368 MKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVG--MGDIVTKESFEWLFSNPRFIRASSVVCRLMDD 445 (547)
Q Consensus 368 w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~ND 445 (547)
....+.+-..+..|.. ..||.++|...-..-+|..+..+. ..| ++ ..+++..+. ..++-+..+...-+.||
T Consensus 144 ~~~~~~GQ~lDl~~~~--~~~~~~~y~~i~~~KTg~L~~~a~-~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFED--KRLSLNELEFLHTHKTARLIAAAL-KMGCEIC-ELNNEESNQ---IYKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHcccHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4556666666667643 468999999986554444433222 122 11 235554443 35677888888999999
Q ss_pred CcChHHhh-hcCCC-------cchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 446 MASHEFEQ-SRGHV-------ASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 446 I~S~kkE~-~rG~~-------~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
+..+.-.. .-|+. .+.+.++ ..+.|.+..+++++++.+.++.
T Consensus 217 iLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~~ 266 (291)
T 3npk_A 217 IIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLEK 266 (291)
T ss_dssp HHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 97765332 22322 1333332 3678888888888888877653
No 45
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=44.87 E-value=95 Score=31.13 Aligned_cols=102 Identities=11% Similarity=0.101 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhCCCCCChHHHHhhhhcccchh-HHHH--HHHHhcCCCcchhHHhhhcchhHHHHH
Q 039366 360 RLHYAKKAMKNIVKNYFFEAKW-CHQNYIPTMDEYMTVALVTSAYP-MLST--TSFVGMGDIVTKESFEWLFSNPRFIRA 435 (547)
Q Consensus 360 ~~~~l~~~w~~~~~a~l~EAkW-~~~g~vPt~eEYl~~~~iS~g~~-~~~~--~~~~~~g~~l~~ev~e~~~~~~~l~~~ 435 (547)
.+..+.+....++.+-+.+..| ...+..||.++|+..-..-+|.. +..+ +.-...|. +++.. ..++...
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~--~~~~~-----l~~~g~~ 203 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK--TPPAA-----YEEGGLR 203 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC--CCCHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC--CHHHH-----HHHHHHH
Confidence 5667788889999999999999 65435689999998877665555 3322 22222332 23222 3566777
Q ss_pred HHHHHHHccCCcChHH----------hhhcCCCcchhhHHHhhC
Q 039366 436 SSVVCRLMDDMASHEF----------EQSRGHVASSVECYMKQH 469 (547)
Q Consensus 436 ~~~i~RL~NDI~S~kk----------E~~rG~~~n~V~cyMke~ 469 (547)
.+...-+.||+..+.- +...|.. +...+|.-+.
T Consensus 204 lG~aFQi~DD~ld~~~d~~~GK~~g~Dl~egK~-T~p~i~al~~ 246 (330)
T 1wmw_A 204 LGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKR-TLILLRFLEE 246 (330)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHccCcccCCcccCCCcCchhhCCCC-CHHHHHHHHh
Confidence 8888888888866542 2334443 5665665443
No 46
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=44.35 E-value=99 Score=31.44 Aligned_cols=85 Identities=11% Similarity=0.097 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHHhhhcchhHHHHHHH
Q 039366 360 RLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESFEWLFSNPRFIRASS 437 (547)
Q Consensus 360 ~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~~ 437 (547)
.+..+.+....++.+-+.+..|... ..||.++|+..-..-+|..+..++.. ...| .+++..+. ...+-+..+
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG 217 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACASSIGAVLGG--ADERTADT---LEKYGYHLG 217 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 4567788888999999999898654 36899999988777666655433222 1123 35555544 356778888
Q ss_pred HHHHHccCCcChH
Q 039366 438 VVCRLMDDMASHE 450 (547)
Q Consensus 438 ~i~RL~NDI~S~k 450 (547)
..+-+.||+..+-
T Consensus 218 ~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 218 LAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8999999987663
No 47
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=41.62 E-value=1.1e+02 Score=24.07 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=35.5
Q ss_pred CCcccchhhHHHHHHhCcccccHHHHHHHHHHhHhhccCCCCCCCCCCchhHHHHHHHHHH-hcCcccccc
Q 039366 69 KPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLR-QHGYKISAD 138 (547)
Q Consensus 69 ~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRLLR-~~Gy~vS~D 138 (547)
+..+..=++...+.++|+. ++|+++++..+= .+|++.-+.++. ..+|.-.-.+ +.|+.++..
T Consensus 24 dG~I~~~el~~~l~~~g~~---~~~~~~i~~~~D----~d~dG~i~~~EF-~~~~~~~~~~~~~g~~lP~~ 86 (95)
T 1c07_A 24 DGFVSGLEVREIFLKTGLP---STLLAHIWSLCD----TKDCGKLSKDQF-ALAFHLISQKLIKGIDPPHV 86 (95)
T ss_dssp SSEECHHHHHHHHHTTTCC---HHHHHHHHHHHC----TTCSSSEETTTH-HHHHHHHHHHHTSCCCCCSS
T ss_pred CCcEeHHHHHHHHHHcCCC---HHHHHHHHHHHC----CCCCCcCCHHHH-HHHHHHHHHHHHcCCCCCCc
Confidence 4566777788889999976 677777665441 111211112233 3333333334 789988653
No 48
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=40.72 E-value=33 Score=34.06 Aligned_cols=109 Identities=12% Similarity=0.062 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhhCC-CCCChHHHHhhhhcccchhHHHHH--HHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCC
Q 039366 370 NIVKNYFFEAKWCHQN-YIPTMDEYMTVALVTSAYPMLSTT--SFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDM 446 (547)
Q Consensus 370 ~~~~a~l~EAkW~~~g-~vPt~eEYl~~~~iS~g~~~~~~~--~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 446 (547)
.++.+-..+..|...+ ..+|.++|+..-..-+|..+..++ .-...| .+++..+. ..++-...+...-+.||+
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~DDi 235 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGG--GSDEEIER---LRKFARCIGLLFQVVDDI 235 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3556666666664321 246899999885443333332221 112223 35555544 356778888999999999
Q ss_pred cChHHhhhcCCCcchhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhh
Q 039366 447 ASHEFEQSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINE 493 (547)
Q Consensus 447 ~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~ 493 (547)
..+..+. -.+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 236 LD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 236 LDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8775433 23555444 4678888888888888876654
No 49
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=38.42 E-value=70 Score=25.77 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=43.1
Q ss_pred CCcccchhhHHHHHHhCcccccHHHHHHHHHHhHhhccCCCCCCCCCCchhHHHHHHHHHHhcCccccccccc
Q 039366 69 KPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFK 141 (547)
Q Consensus 69 ~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRLLR~~Gy~vS~Dvf~ 141 (547)
+..+..=++...+.++|++ ++|++++++.+-. +|++. -..+=...+|.-.-+.|+|+.++.+.+.
T Consensus 25 dG~Is~~el~~~l~~~~l~---~~~l~~i~~~~D~----d~dG~-i~~~EF~~~~~~~~~~~~g~~~~~~~l~ 89 (99)
T 1qjt_A 25 TGRVLALDAAAFLKKSGLP---DLILGKIWDLADT----DGKGV-LSKQEFFVALRLVACAQNGLEVSLSSLS 89 (99)
T ss_dssp SSCCCSHHHHHHHHTSSSC---HHHHHHHHHHHCC----SSSSS-CCSHHHHHHHHHHHHHTTTCCSSGGGCS
T ss_pred CCcCCHHHHHHHHHHcCCC---HHHHHHHHHHHCC----CCCCc-CCHHHHHHHHHHHHHHHcCCCCChhhcc
Confidence 4456667788888999976 6777777655421 22222 1224456677777889999999977654
No 50
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=32.34 E-value=3.8e+02 Score=26.52 Aligned_cols=83 Identities=7% Similarity=0.015 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHH--HHhcCCCcchhHHhhhcchhHHHHHH
Q 039366 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTS--FVGMGDIVTKESFEWLFSNPRFIRAS 436 (547)
Q Consensus 359 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~--~~~~g~~l~~ev~e~~~~~~~l~~~~ 436 (547)
.....+.+....++.+-+.+..|... ..||.++|+..-..-+|..+..++. -...|.. . + ....+-...
T Consensus 122 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~---~---~l~~~g~~l 192 (315)
T 3tc1_A 122 LIAQALSNAVLRLSRGEIEDVFVGEC-FNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--A---K---IYADFGLNF 192 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC--H---H---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC--H---H---HHHHHHHHH
Confidence 35667778888999999999998653 4689999998766655554433221 1222332 1 1 234667778
Q ss_pred HHHHHHccCCcChH
Q 039366 437 SVVCRLMDDMASHE 450 (547)
Q Consensus 437 ~~i~RL~NDI~S~k 450 (547)
+...-+.||+..+.
T Consensus 193 G~aFQI~DD~ld~~ 206 (315)
T 3tc1_A 193 GMAFQIIDDLLDIT 206 (315)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhccc
Confidence 88888888887653
No 51
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=29.44 E-value=1.8e+02 Score=29.66 Aligned_cols=88 Identities=10% Similarity=0.014 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC----CCChHHHHhhhhcccchh-HHH--HHHHHhcCCCcchhHHhhhcchhHH
Q 039366 360 RLHYAKKAMKNIVKNYFFEAKWCHQNY----IPTMDEYMTVALVTSAYP-MLS--TTSFVGMGDIVTKESFEWLFSNPRF 432 (547)
Q Consensus 360 ~~~~l~~~w~~~~~a~l~EAkW~~~g~----vPt~eEYl~~~~iS~g~~-~~~--~~~~~~~g~~l~~ev~e~~~~~~~l 432 (547)
.+..+.+.....+.+-+.+..|...+. .+|+++|+..-..-+|.. +.. ...-+..|. .+++..+. ..++
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~-~~~~~~~~---l~~~ 245 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI-DSKEEHEN---AKAI 245 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTC-CCHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCC-ccHHHHHH---HHHH
Confidence 466677888888999999999976543 579999999877766654 322 222222331 34555443 3567
Q ss_pred HHHHHHHHHHccCCcChHH
Q 039366 433 IRASSVVCRLMDDMASHEF 451 (547)
Q Consensus 433 ~~~~~~i~RL~NDI~S~kk 451 (547)
....+...-+.||+..+.-
T Consensus 246 g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 246 LLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7888889999999977653
No 52
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=28.78 E-value=1.9e+02 Score=28.34 Aligned_cols=117 Identities=9% Similarity=0.034 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHh-cCCCcchhHHhhhcchhHHHHHHHH
Q 039366 360 RLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVG-MGDIVTKESFEWLFSNPRFIRASSV 438 (547)
Q Consensus 360 ~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~-~g~~l~~ev~e~~~~~~~l~~~~~~ 438 (547)
.+..+.+++..++.+-+.+..| .++|++.-..-+|..+..++..-+ ++ .+++..+. ..++-...+.
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la--~~~~~~~~---l~~~g~~lG~ 202 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS--KHYNTKQQ---MLDVGKYLGI 202 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT--TCGGGHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc--CCHHHHHH---HHHHHHHHHH
Confidence 4556667777777776655443 688888776655555433222111 23 45554443 3566777888
Q ss_pred HHHHccCCcChHHh----hhcCCCcchhhHHHhhCCCCHHHH-HHHHHHHHHHHHHHHhh
Q 039366 439 VCRLMDDMASHEFE----QSRGHVASSVECYMKQHGATEEEA-CNEFRKQVSNAWKDINE 493 (547)
Q Consensus 439 i~RL~NDI~S~kkE----~~rG~~~n~V~cyMke~g~S~EeA-~~~i~~~I~~~wk~ln~ 493 (547)
..-+.||+..+..+ ...|. .+...+| .+. +.++| ...+.+.++++.+.+..
T Consensus 203 aFQi~DDilD~~~~~K~dl~~gk-~Tlp~l~-~~~--g~~~a~~~~a~~~~~~A~~~L~~ 258 (289)
T 2azj_A 203 IYQVIDDFVDYKTKKVEEIDGSA-KQLFKYY-REG--KLEEYVRSVYLEYKQKYDELISN 258 (289)
T ss_dssp HHHHHHHHHHHTTSCTTTCCTTG-GGGHHHH-TTT--CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhcCCCChhhhcCc-ccHHHHH-HcC--CHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899998766432 22232 4667666 323 46777 45567777777766544
No 53
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=27.44 E-value=98 Score=24.23 Aligned_cols=72 Identities=10% Similarity=0.058 Sum_probs=40.4
Q ss_pred HHHHHHhhc----cCCcccchhhHHHHHHhCcccccHHHHHHHHHHhHhhccCCCCCCCCCCchhHHHHHHHHHHhcCcc
Q 039366 59 EEIRRMLKI----NKPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYK 134 (547)
Q Consensus 59 ~~v~~~l~~----~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRLLR~~Gy~ 134 (547)
++.++.|.. .+..+..=++...+.++|++ ++|+++++..+ ..+|++. -..+=...+|.-.-.++.|+.
T Consensus 9 ~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~---~~~~~~i~~~~----D~d~dG~-i~~~EF~~~~~~~~~~~~g~~ 80 (92)
T 1fi6_A 9 QYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLP---ILELSHIWELS----DFDKDGA-LTLDEFCAAFHLVVARKNGYD 80 (92)
T ss_dssp HHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSC---HHHHHHHHHHH----CTTCSSE-EEHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC---HHHHHHHHHHH----CCCCCCC-CCHHHHHHHHHHHHHHHcCCC
Confidence 345556653 24466777888889999976 66777766544 1111111 011222334444445678998
Q ss_pred cccc
Q 039366 135 ISAD 138 (547)
Q Consensus 135 vS~D 138 (547)
+++.
T Consensus 81 lp~~ 84 (92)
T 1fi6_A 81 LPEK 84 (92)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8763
No 54
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=27.24 E-value=2.4e+02 Score=27.76 Aligned_cols=85 Identities=11% Similarity=0.145 Sum_probs=58.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHH
Q 039366 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSV 438 (547)
Q Consensus 359 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 438 (547)
.....+.+.+..++.+-..+..|......||.++|+..-..-+|..+.++....++--..++ ...++-...+.
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~-------~l~~~g~~lG~ 183 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKE-------DLKPLLNTLGL 183 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCS-------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCChH-------HHHHHHHHHHH
Confidence 34666888899999999999999876667999999998877666554333222111011121 23567778888
Q ss_pred HHHHccCCcChH
Q 039366 439 VCRLMDDMASHE 450 (547)
Q Consensus 439 i~RL~NDI~S~k 450 (547)
..-+.||+..+.
T Consensus 184 aFQi~DD~ld~~ 195 (301)
T 2q80_A 184 FFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhc
Confidence 888889887654
No 55
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=27.11 E-value=68 Score=31.41 Aligned_cols=70 Identities=10% Similarity=0.003 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHh-cCCCcchhHHhhhcchhHHHHHHHHHHHHccCC
Q 039366 371 IVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVG-MGDIVTKESFEWLFSNPRFIRASSVVCRLMDDM 446 (547)
Q Consensus 371 ~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~-~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 446 (547)
++.+-..+..|... .||.++|+..-..-+|..+..++..-+ ++ ..+++..+. ..++-...+...-+.||+
T Consensus 151 ~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a~~lGaila-ga~~~~~~~---l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 151 MISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACGAACGAILG-GAAEEEIQK---LRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHHHHHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 45565556566433 789999998654444444433222111 12 245555544 356778888899999997
No 56
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=27.01 E-value=1.7e+02 Score=29.87 Aligned_cols=86 Identities=5% Similarity=-0.011 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCh-HHHHhhhhcccchh-HH--HHHHHHhcCCCcchhH--HhhhcchhHHH
Q 039366 360 RLHYAKKAMKNIVKNYFFEAKWCHQNYIPTM-DEYMTVALVTSAYP-ML--STTSFVGMGDIVTKES--FEWLFSNPRFI 433 (547)
Q Consensus 360 ~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~-eEYl~~~~iS~g~~-~~--~~~~~~~~g~~l~~ev--~e~~~~~~~l~ 433 (547)
.+..+.++....+.+-+.+..|...+..+++ ++|+..-..-+|.. +. +.+.-+..|. +++. . ....++.
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~--~~~~~~~---~~l~~~g 243 (368)
T 2her_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEI--QVSSAQL---NLIEAIL 243 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCC--CCCCSST---TTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCC--ChhHHHH---HHHHHHH
Confidence 4566778888889998888888766634455 99998866655554 22 2222233342 3332 2 2345677
Q ss_pred HHHHHHHHHccCCcChH
Q 039366 434 RASSVVCRLMDDMASHE 450 (547)
Q Consensus 434 ~~~~~i~RL~NDI~S~k 450 (547)
...+...-+.||+..+-
T Consensus 244 ~~lG~aFQI~DD~LD~~ 260 (368)
T 2her_A 244 YKLGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888899999987764
No 57
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=26.32 E-value=1.2e+02 Score=30.65 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC--CCCChHHHHhhhhcccchhHHHHHHH--HhcCCCcchhHHhhhcchhHHHHH
Q 039366 360 RLHYAKKAMKNIVKNYFFEAKWCHQN--YIPTMDEYMTVALVTSAYPMLSTTSF--VGMGDIVTKESFEWLFSNPRFIRA 435 (547)
Q Consensus 360 ~~~~l~~~w~~~~~a~l~EAkW~~~g--~vPt~eEYl~~~~iS~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~ 435 (547)
.+..+.+....++.+-..+..|.... ..||.++|+..-..-+|..+.+++.. ...| .+++ . ....++-..
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~-~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP--SSHH-G---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC--C----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CcHH-H---HHHHHHHHH
Confidence 45667778888999999999998755 57899999998777666554433222 1122 2221 2 334677888
Q ss_pred HHHHHHHccCCcChH
Q 039366 436 SSVVCRLMDDMASHE 450 (547)
Q Consensus 436 ~~~i~RL~NDI~S~k 450 (547)
.+...-+.||+..+.
T Consensus 206 lG~aFQi~DD~ld~~ 220 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLK 220 (340)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999997764
No 58
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=25.77 E-value=5.1e+02 Score=25.87 Aligned_cols=201 Identities=9% Similarity=0.061 Sum_probs=96.5
Q ss_pred HHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccC-CHHH----HHHHHHHHhh--ccchhhccCChhHHHHHHHH
Q 039366 269 CYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYG-KIEE----LELFTSAIKR--WDISAIDQLPEYMKLCYRAL 341 (547)
Q Consensus 269 ~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~yg-t~eE----l~~ft~aier--WD~~~~~~lPeymk~~f~al 341 (547)
+|++++-... |+ .|..+.-+-.|.=..||+-|... +.++ |..|.+.+.. |.... .-|.. +.++..+
T Consensus 26 sF~la~~lLp-~~---~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~--~~~~~-~~ll~~~ 98 (343)
T 3vj8_A 26 SFAAVIQALD-GE---MRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFME--SKEKD-RQVLEDF 98 (343)
T ss_dssp GGHHHHHTCC-TT---HHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCC--CCSTT-THHHHTH
T ss_pred cHHHHHHhCC-HH---HHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhcC--CChhh-HHHHhcC
Confidence 5555554443 43 45556677788899999999764 3433 4455555442 32111 11221 2222211
Q ss_pred HHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchh
Q 039366 342 LDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKE 421 (547)
Q Consensus 342 ~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~e 421 (547)
-.+...+.. +.. . ....+.+....++.++.. +.. ...+|++|+..+-..+.|+--.+++-.++....-+.
T Consensus 99 p~v~~~f~~-l~~---~-~~~~i~~~~~~m~~gm~~---dl~-~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~- 168 (343)
T 3vj8_A 99 PTISLEFRN-LAE---K-YQTVIADICRRMGIGMAE---FLD-KHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDP- 168 (343)
T ss_dssp HHHHHHHHH-SCH---H-HHHHHHHHHHHHHHHHHH---GGG-CCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCH-
T ss_pred cHHHHHHHH-hHH---H-HHHHHHHHHHHHHHHHHH---hcc-CCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccc-
Confidence 111111110 000 0 111122333444555532 222 567899888888888777666655555554321111
Q ss_pred HHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCC--cchhhHHHhhCCCCHH---------HHHHHHHHHHHHHHHH
Q 039366 422 SFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHV--ASSVECYMKQHGATEE---------EACNEFRKQVSNAWKD 490 (547)
Q Consensus 422 v~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~--~n~V~cyMke~g~S~E---------eA~~~i~~~I~~~wk~ 490 (547)
..+. ........+.-.-+.|=+........+|-+ +.- .|.++|++.+ .+..-+..++..+..-
T Consensus 169 ~~~~---~~~~A~~lG~AlQltNilRDv~eD~~~gR~YlP~e---~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~ 242 (343)
T 3vj8_A 169 LVGE---DTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQE---VWSRYVKKLGDFAKPENIDLAVQCLNELITNALHH 242 (343)
T ss_dssp HHHH---CHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSCHH---HHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTT
T ss_pred hhhh---HHHHHHHHHHHHHHHHHHHHhHHHHhCCCeeCCHH---HHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 1111 122334444444444444444555666753 322 3566788754 3445556666666644
Q ss_pred Hh
Q 039366 491 IN 492 (547)
Q Consensus 491 ln 492 (547)
+.
T Consensus 243 ~~ 244 (343)
T 3vj8_A 243 IP 244 (343)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 59
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=25.72 E-value=1.7e+02 Score=29.64 Aligned_cols=105 Identities=9% Similarity=-0.018 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----------hCCC----CCChHHHHhhhhcccchh-HHHH--HHHHhcCCCcchh
Q 039366 360 RLHYAKKAMKNIVKNYFFEAKWC-----------HQNY----IPTMDEYMTVALVTSAYP-MLST--TSFVGMGDIVTKE 421 (547)
Q Consensus 360 ~~~~l~~~w~~~~~a~l~EAkW~-----------~~g~----vPt~eEYl~~~~iS~g~~-~~~~--~~~~~~g~~l~~e 421 (547)
.+..+.+....++.+-+.+..|. ..|. .+|.++|+..-..-+|.. +..+ ..-+..| ..+++
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag-~~~~~ 230 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSE-AAASV 230 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcC-CCCHH
Confidence 56677788888999999998887 3223 489999999887766655 3222 2222223 12344
Q ss_pred HHhhhcchhHHHHHHHHHHHHccCCcChHHh----------hhcCCCcchhhHHHhhC
Q 039366 422 SFEWLFSNPRFIRASSVVCRLMDDMASHEFE----------QSRGHVASSVECYMKQH 469 (547)
Q Consensus 422 v~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE----------~~rG~~~n~V~cyMke~ 469 (547)
..+. ..++....+...-+.||+..+.-. ...|.. +...+|.-+.
T Consensus 231 ~~~~---l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~-T~p~l~al~~ 284 (362)
T 1yhl_A 231 EMNL---VERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKC-SWLAVTFLGK 284 (362)
T ss_dssp CHHH---HHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCC-CHHHHHHHTT
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCc-hHHHHHHHHh
Confidence 3333 356778888899999999776432 222333 6666665544
No 60
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=25.02 E-value=1.6e+02 Score=29.45 Aligned_cols=88 Identities=10% Similarity=0.078 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHH
Q 039366 359 YRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSV 438 (547)
Q Consensus 359 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 438 (547)
..+..+.+....++.+-..+..|... ..||.++|+..-..-+|..+..++..-++=-..+++..+. ..++-...+.
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~ 205 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYH---IKQFGHCIGM 205 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 45677788888999999999988653 3589999999887766666443322221111245555544 3567788888
Q ss_pred HHHHccCCcChH
Q 039366 439 VCRLMDDMASHE 450 (547)
Q Consensus 439 i~RL~NDI~S~k 450 (547)
..-+.||+..+.
T Consensus 206 afQi~DD~ld~~ 217 (325)
T 3aqb_B 206 SYQIIDDILDYT 217 (325)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999987764
No 61
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=24.51 E-value=5.7e+02 Score=25.99 Aligned_cols=87 Identities=9% Similarity=0.102 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC-----------------------CCCChHHHHhhhhcccchh---HHHHHHHHh
Q 039366 360 RLHYAKKAMKNIVKNYFFEAKWCHQN-----------------------YIPTMDEYMTVALVTSAYP---MLSTTSFVG 413 (547)
Q Consensus 360 ~~~~l~~~w~~~~~a~l~EAkW~~~g-----------------------~vPt~eEYl~~~~iS~g~~---~~~~~~~~~ 413 (547)
.+..+.++....+.+-..+..|.... ..+|+++|+++-..=+|.. ..+......
T Consensus 179 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ 258 (395)
T 3mav_A 179 VIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLL 258 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 45556666677777777666664321 2358999998766655543 222333333
Q ss_pred cCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcCh
Q 039366 414 MGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASH 449 (547)
Q Consensus 414 ~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~ 449 (547)
.|...+++..+.+ .++-...+..+-+.||+..+
T Consensus 259 ag~~~d~~~~~~l---~~~g~~lG~aFQI~DDiLD~ 291 (395)
T 3mav_A 259 AGIAVDNLIYKKI---EDISMLMGEYFQIHDDYLDI 291 (395)
T ss_dssp TTCCTTCTHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 4444444444432 45677788888899998665
No 62
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=22.32 E-value=37 Score=38.57 Aligned_cols=40 Identities=20% Similarity=0.479 Sum_probs=15.9
Q ss_pred CCCCCCCccCccccCC-CCcchhhhHHHHHHHHHHHHHHhh
Q 039366 27 NFHPSIWGDRFLSYTS-DSMEKDDGSAKHQELKEEIRRMLK 66 (547)
Q Consensus 27 ~~~ps~W~~~fl~~~~-~~~~~~~~~~~~~~lk~~v~~~l~ 66 (547)
+|||++|++.++.... +........++++.|++++|+||.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 45 (785)
T 3s9v_A 5 EFPPGFWKDDLIDSLTSSHKVAASDEKRIETLISEIKNMFR 45 (785)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCcccccccCCCccccCcchhHHHHHHHHHHHHHhh
Confidence 6899999999987422 221233457888999999999995
No 63
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=21.71 E-value=2.1e+02 Score=23.34 Aligned_cols=70 Identities=1% Similarity=-0.079 Sum_probs=42.0
Q ss_pred HHHHHhhc---cCCcccchhhHHHHHHhCcccccHHHHHHHHHHhHhhccCCCCCCCCCCchhHHHHHHHHHHhcCcccc
Q 039366 60 EIRRMLKI---NKPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKIS 136 (547)
Q Consensus 60 ~v~~~l~~---~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRLLR~~Gy~vS 136 (547)
+.+++|.. .+..+..=++...+.++|++ ++|++++++.+ ..+|+|. -..+=...+|.-.-.++.|+.++
T Consensus 16 ~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~---~~el~~i~~~~----D~d~dG~-id~~EF~~~m~~~~~~~~g~~lP 87 (106)
T 1eh2_A 16 KYDAIFDSLSPVNGFLSGDKVKPVLLNSKLP---VDILGRVWELS----DIDHDGM-LDRDEFAVAMFLVYCALEKEPVP 87 (106)
T ss_dssp HHHHHHTTSCCSSSCCBHHHHHHHHHTTTCC---HHHHHHHHHHH----CSSCSSB-CCHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhCCCCCeEcHHHHHHHHHHcCCC---HHHHHHHHHHH----cCCCCCc-CcHHHHHHHHHHHHHHHcCCCCC
Confidence 44555543 23466677888999999987 66777766543 2222221 11133455666666777898887
Q ss_pred c
Q 039366 137 A 137 (547)
Q Consensus 137 ~ 137 (547)
+
T Consensus 88 ~ 88 (106)
T 1eh2_A 88 M 88 (106)
T ss_dssp S
T ss_pred C
Confidence 6
No 64
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=21.51 E-value=6.5e+02 Score=25.55 Aligned_cols=77 Identities=8% Similarity=0.000 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcccchh-HH--HHHHHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHcc
Q 039366 368 MKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYP-ML--STTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMD 444 (547)
Q Consensus 368 w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~g~~-~~--~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~N 444 (547)
...++.+-+.+..|...+ .||.++|+.+-..-+|.. +. +...-...| .+++..+. ...+-...+..+-+.|
T Consensus 184 ~~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~lag--a~~~~~~~---l~~~G~~lG~AFQI~D 257 (380)
T 3lk5_A 184 RTEVIGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARPLHLGASIAG--GSPQLIDA---LLHYGHDIGIAFQLRD 257 (380)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 356777888888887644 579999998766655554 22 122222233 34555544 3567788888999999
Q ss_pred CCcChH
Q 039366 445 DMASHE 450 (547)
Q Consensus 445 DI~S~k 450 (547)
|+..+-
T Consensus 258 DiLd~~ 263 (380)
T 3lk5_A 258 DLLGVF 263 (380)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 987663
Done!