BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039367
         (86 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
 pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
          Length = 319

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 1   MQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSRRYGPIKELL---SEENPTLYPA 57
           +++ITN K+KS  HRV+++K+G+R S+ SF+   S +  Y P   L+   +EEN  +YP 
Sbjct: 221 LEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIY-PAPALVEKEAEENKQVYPK 279

Query: 58  ITLKD 62
               D
Sbjct: 280 FVFDD 284


>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Naringenin
          Length = 355

 Score = 35.8 bits (81), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 1   MQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSRRYGPIKELLSEENPTLYPAITL 60
           +++++N K+KS  HR L  KE  RIS   F           P+ E++S E+P  +P  T 
Sbjct: 274 LEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTF 333


>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin
 pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
          Length = 356

 Score = 35.8 bits (81), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 1   MQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSRRYGPIKELLSEENPTLYPAITL 60
           +++++N K+KS  HR L  KE  RIS   F           P+ E++S E+P  +P  T 
Sbjct: 275 LEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTF 334


>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
           (Selenomethionine Substituted)
          Length = 356

 Score = 34.7 bits (78), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 1   MQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSRRYGPIKELLSEENPTLYPAITL 60
           +++++N K+KS  HR L  KE  RIS   F           P+ E +S E+P  +P  T 
Sbjct: 275 LEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTF 334


>pdb|1Y1X|A Chain A, Structural Analysis Of A Homolog Of Programmed Cell Death
           6 Protein From Leishmania Major Friedlin
 pdb|1Y1X|B Chain B, Structural Analysis Of A Homolog Of Programmed Cell Death
           6 Protein From Leishmania Major Friedlin
          Length = 191

 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 4   ITNDKFKSAYHRVLSKKEGSR 24
           IT D+FK  +H +LS +EG R
Sbjct: 80  ITFDEFKDLHHFILSMREGFR 100


>pdb|1LJ9|A Chain A, The Crystal Structure Of The Transcriptional Regulator
           Slya
 pdb|1LJ9|B Chain B, The Crystal Structure Of The Transcriptional Regulator
           Slya
          Length = 144

 Score = 25.8 bits (55), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 48  SEENPTLYPAITLKDIYNNQSSTEGLSALE 77
           +E+   +YP I  ++ ++NQ + +GLS +E
Sbjct: 90  TEKGKNVYPIIVRENQHSNQVALQGLSEVE 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.131    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,354,424
Number of Sequences: 62578
Number of extensions: 75551
Number of successful extensions: 163
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 9
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)