Query 039367
Match_columns 86
No_of_seqs 106 out of 1033
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 15:12:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w9y_A 1-aminocyclopropane-1-c 99.9 1.9E-24 6.6E-29 154.8 3.9 81 1-82 221-307 (319)
2 1gp6_A Leucoanthocyanidin diox 99.9 2.3E-23 7.9E-28 151.0 3.3 71 1-72 275-348 (356)
3 3oox_A Putative 2OG-Fe(II) oxy 99.9 1.8E-22 6.2E-27 143.8 4.5 65 1-66 235-304 (312)
4 1odm_A Isopenicillin N synthas 99.8 4.4E-21 1.5E-25 137.7 4.9 63 1-66 257-319 (331)
5 1dcs_A Deacetoxycephalosporin 99.8 3.3E-21 1.1E-25 137.4 2.9 64 1-66 230-300 (311)
6 3on7_A Oxidoreductase, iron/as 99.6 1.2E-16 4.1E-21 112.6 2.8 51 1-66 218-272 (280)
7 2rg4_A Uncharacterized protein 76.6 1.7 5.9E-05 28.8 2.6 23 12-34 185-208 (216)
8 2vf9_A Coat protein; virion, R 68.6 1.6 5.5E-05 26.4 0.9 16 3-18 51-66 (131)
9 3plx_A Aspartate 1-decarboxyla 44.7 9.2 0.00031 17.6 1.0 12 8-19 8-19 (27)
10 1vc3_A L-aspartate-alpha-decar 43.4 9.9 0.00034 17.3 1.0 12 8-19 5-16 (26)
11 1uhe_B Aspartate 1-decarboxyla 43.1 10 0.00035 17.3 1.0 12 8-19 5-16 (26)
12 3dl3_A Tellurite resistance pr 37.4 21 0.00071 21.9 2.2 23 11-34 79-101 (119)
13 2op5_A Hypothetical protein; f 31.9 43 0.0015 19.7 2.8 28 6-34 46-73 (117)
14 2hbt_A EGL nine homolog 1; pro 26.5 48 0.0016 22.1 2.8 22 12-34 193-214 (247)
15 3bb6_A Uncharacterized protein 24.9 44 0.0015 20.6 2.1 24 11-34 80-103 (127)
No 1
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=99.89 E-value=1.9e-24 Score=154.83 Aligned_cols=81 Identities=31% Similarity=0.530 Sum_probs=68.2
Q ss_pred CcceeCCeeecccceeecCCCCCceeEEEeeccCCCCCeeecCccccCCC---CCCCCCcccHHHHHHH--hcCCCCccc
Q 039367 1 MQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSRRYGPIKELLSEE---NPTLYPAITLKDIYNN--QSSTEGLSA 75 (86)
Q Consensus 1 le~~SnG~~kS~~HRVv~~~~~~R~Sia~F~~p~~~d~~v~pl~~~~~~~---~~~~y~~~~~~d~~~~--~~~~~~~~~ 75 (86)
||+||||+|||++|||++++.++|||+|||++|+. |++|+|+++|++++ +|++|++++++||+.. .+...++..
T Consensus 221 l~~~SnG~~kS~~HRVv~~~~~~R~Sia~F~~p~~-d~~i~pl~~l~~~~~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~ 299 (319)
T 1w9y_A 221 LEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGS-DAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEP 299 (319)
T ss_dssp HHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCT-TCEECCCGGGC--------CCCCCEEHHHHHHTTTTTTCSSHHH
T ss_pred HHHHhCCeeecccceecCCCCCCceEEEEEecCCC-CCeEeCchhhcCcccccCccccCcEeHHHHHHHHHhhhcCcchh
Confidence 58999999999999999998899999999999995 99999999999987 5999999999999998 556666654
Q ss_pred -ccccccc
Q 039367 76 -LEKLKLE 82 (86)
Q Consensus 76 -l~~~~~~ 82 (86)
++.+|+.
T Consensus 300 ~~~~~~~~ 307 (319)
T 1w9y_A 300 RFEAMKAM 307 (319)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 6777764
No 2
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=99.87 E-value=2.3e-23 Score=150.99 Aligned_cols=71 Identities=28% Similarity=0.461 Sum_probs=65.0
Q ss_pred CcceeCCeeecccceeecCCCCCceeEEEeeccCCCCC-eeecCccccCCCCCCCCCcccHHHHHHH--hcCCCC
Q 039367 1 MQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSR-RYGPIKELLSEENPTLYPAITLKDIYNN--QSSTEG 72 (86)
Q Consensus 1 le~~SnG~~kS~~HRVv~~~~~~R~Sia~F~~p~~~d~-~v~pl~~~~~~~~~~~y~~~~~~d~~~~--~~~~~~ 72 (86)
||+||||+|||++|||++++.++|||+|||++|+. |+ +|+|+++|+++++|++|++++++||+.. .++.++
T Consensus 275 l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~-d~~~i~pl~~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~ 348 (356)
T 1gp6_A 275 LEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPK-DKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQE 348 (356)
T ss_dssp HHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCT-TTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHhcCCEeeccCceecCCCCCCEEEEEEeecCCC-CCcEEeCChhhcCCCCCccCCCccHHHHHHHHHHhccCc
Confidence 58999999999999999998899999999999995 99 9999999999999999999999999977 444444
No 3
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=99.86 E-value=1.8e-22 Score=143.85 Aligned_cols=65 Identities=26% Similarity=0.407 Sum_probs=60.4
Q ss_pred CcceeCCeeecccceeecCC----CCCceeEEEeeccCCCCCeeecCccccCCCCCCCCC-cccHHHHHHH
Q 039367 1 MQLITNDKFKSAYHRVLSKK----EGSRISIGSFFMNNSCSRRYGPIKELLSEENPTLYP-AITLKDIYNN 66 (86)
Q Consensus 1 le~~SnG~~kS~~HRVv~~~----~~~R~Sia~F~~p~~~d~~v~pl~~~~~~~~~~~y~-~~~~~d~~~~ 66 (86)
||+||||+|||++|||++++ ..+|||+|||++|+. |++|+|+++|+++++|++|+ +++++||+..
T Consensus 235 l~~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~-d~~i~pl~~~v~~~~p~~y~~~~t~~eyl~~ 304 (312)
T 3oox_A 235 LERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFAS-DYEIKTLQNCVTAENPDRYPESITADEFLQQ 304 (312)
T ss_dssp HHHHTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCT-TCEECCCGGGCCSSSCCSCSSCEEHHHHHHH
T ss_pred HHHHhCCeecCCCceEeCCCccCCCCCEEEEEEEecCCC-CcEEecCccccCCCCcccCCCCeeHHHHHHH
Confidence 58999999999999998763 467999999999995 99999999999999999999 9999999987
No 4
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=99.82 E-value=4.4e-21 Score=137.71 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=58.9
Q ss_pred CcceeCCeeecccceeecCCCCCceeEEEeeccCCCCCeeecCccccCCCCCCCCCcccHHHHHHH
Q 039367 1 MQLITNDKFKSAYHRVLSKKEGSRISIGSFFMNNSCSRRYGPIKELLSEENPTLYPAITLKDIYNN 66 (86)
Q Consensus 1 le~~SnG~~kS~~HRVv~~~~~~R~Sia~F~~p~~~d~~v~pl~~~~~~~~~~~y~~~~~~d~~~~ 66 (86)
||+||||+|||+.|||++ +.++|||+|||++|+. |++|+|+++++++++ ++|++++++||+..
T Consensus 257 l~~~TnG~~kS~~HRVv~-~~~~R~Sia~F~~P~~-d~~i~pl~~~~~~~~-~~y~~~t~~e~l~~ 319 (331)
T 1odm_A 257 MAHLTNNYYKAPIHRVKW-VNAERQSLPFFVNLGY-DSVIDPFDPREPNGK-SDREPLSYGDYLQN 319 (331)
T ss_dssp HHHHTTTSSCCCCEEEEC-CCSCEEEEEEEECCCT-TCBCCCCCTTSTTCC-CSSCCCBHHHHHHH
T ss_pred HHHHhCCEeeCCCceeCC-CCCCEEEEEEEEcCCC-CCEEeCCCccccccc-cCCCCccHHHHHHH
Confidence 589999999999999986 4789999999999995 999999999998887 89999999999987
No 5
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=99.82 E-value=3.3e-21 Score=137.45 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=59.7
Q ss_pred CcceeCCeeecccceeecCC-----CCCceeEEEeeccCCCCCeeecCccccCCCCCCCC--CcccHHHHHHH
Q 039367 1 MQLITNDKFKSAYHRVLSKK-----EGSRISIGSFFMNNSCSRRYGPIKELLSEENPTLY--PAITLKDIYNN 66 (86)
Q Consensus 1 le~~SnG~~kS~~HRVv~~~-----~~~R~Sia~F~~p~~~d~~v~pl~~~~~~~~~~~y--~~~~~~d~~~~ 66 (86)
||+||||+|||+.|||++++ .++|||+|||++|+. |++|+ +++++++++|++| ++++++||+..
T Consensus 230 l~~~TnG~~kS~~HRVv~~~~~~~~~~~R~Si~~F~~p~~-d~~i~-l~~~~~~~~p~~y~~~~~t~~ey~~~ 300 (311)
T 1dcs_A 230 ATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNA-DFTFS-VPLARECGFDVSLDGETATFQDWIGG 300 (311)
T ss_dssp HHHHTTSCSCCCCEEECCC----CTTCCEEEEEEEECCCT-TCEEE-HHHHHHTTCCCCCCSSEEEHHHHHCS
T ss_pred HHHHhCCcccCCCceEeCCCcccCCCCCeEEEEEEEcCCC-CcEEe-CCcccCCCCccccCCCCccHHHHHHH
Confidence 58999999999999999987 689999999999995 99999 9999999999999 99999999877
No 6
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=99.62 E-value=1.2e-16 Score=112.56 Aligned_cols=51 Identities=25% Similarity=0.301 Sum_probs=45.5
Q ss_pred CcceeCCeeecccceeecCC----CCCceeEEEeeccCCCCCeeecCccccCCCCCCCCCcccHHHHHHH
Q 039367 1 MQLITNDKFKSAYHRVLSKK----EGSRISIGSFFMNNSCSRRYGPIKELLSEENPTLYPAITLKDIYNN 66 (86)
Q Consensus 1 le~~SnG~~kS~~HRVv~~~----~~~R~Sia~F~~p~~~d~~v~pl~~~~~~~~~~~y~~~~~~d~~~~ 66 (86)
||+||||+|||+.|||++++ ..+|||+|||++|+. |++|+| ++|++||+..
T Consensus 218 l~~~Tng~~kS~~HRVv~~~~~~~~~~R~Si~~F~~P~~-d~~i~p--------------~ita~~~l~~ 272 (280)
T 3on7_A 218 LQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHP-SVVLSE--------------RYTADSYLME 272 (280)
T ss_dssp HHHHTTTSSCCCCEEEECCTTCCTTSCEEECCEEECCCT-TCBCSS--------------SCBHHHHHHH
T ss_pred HHHHhCCcccCCCceEeCCCCCCCCCCeEEEEEEEcCCC-CCEECC--------------CccHHHHHHH
Confidence 58999999999999999874 468999999999995 999974 5899999987
No 7
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=76.56 E-value=1.7 Score=28.83 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=18.1
Q ss_pred ccceeecCCC-CCceeEEEeeccC
Q 039367 12 AYHRVLSKKE-GSRISIGSFFMNN 34 (86)
Q Consensus 12 ~~HRVv~~~~-~~R~Sia~F~~p~ 34 (86)
-.|.|..+.. .+|+||+|.+.+.
T Consensus 185 l~H~V~p~~~~~~RiSIsFN~~~~ 208 (216)
T 2rg4_A 185 LRHEVPMNMAEEDRISVSFNYAWG 208 (216)
T ss_dssp SCEEECCCCSSSCEEEEEEEEEC-
T ss_pred CEEeccCCCCCCCEEEEEEEeecC
Confidence 4688887654 6899999999886
No 8
>2vf9_A Coat protein; virion, RNA-binding, capsid protein, structural protein, virus; 3.50A {Bacteriophage PRR1}
Probab=68.63 E-value=1.6 Score=26.37 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.2
Q ss_pred ceeCCeeecccceeec
Q 039367 3 LITNDKFKSAYHRVLS 18 (86)
Q Consensus 3 ~~SnG~~kS~~HRVv~ 18 (86)
.-|||+|||++.-|+.
T Consensus 51 ktsngrykstlklvvp 66 (131)
T 2vf9_A 51 KTSNGRYKSTLKLVVP 66 (131)
T ss_dssp ECTTSEEEEEEEEEEE
T ss_pred ecCCCceeeeEEEEEE
Confidence 3589999999988764
No 9
>3plx_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=44.68 E-value=9.2 Score=17.56 Aligned_cols=12 Identities=33% Similarity=0.335 Sum_probs=10.2
Q ss_pred eeecccceeecC
Q 039367 8 KFKSAYHRVLSK 19 (86)
Q Consensus 8 ~~kS~~HRVv~~ 19 (86)
.+||-+||+.+.
T Consensus 8 ~LksKiHratVT 19 (27)
T 3plx_A 8 LLKSKIHRASVT 19 (27)
T ss_dssp EEEEEEEEEECC
T ss_pred HHHHhhhceEEe
Confidence 678999999875
No 10
>1vc3_A L-aspartate-alpha-decarboxylase light chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_A
Probab=43.38 E-value=9.9 Score=17.29 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=10.0
Q ss_pred eeecccceeecC
Q 039367 8 KFKSAYHRVLSK 19 (86)
Q Consensus 8 ~~kS~~HRVv~~ 19 (86)
.+||-+||+.+.
T Consensus 5 ~lksKiHratVT 16 (26)
T 1vc3_A 5 MFHAKIHRATVT 16 (26)
T ss_dssp EEEEEEEEEECC
T ss_pred HhhhhhcceEEe
Confidence 578899999885
No 11
>1uhe_B Aspartate 1-decarboxylase beta chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_B*
Probab=43.10 E-value=10 Score=17.26 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=10.0
Q ss_pred eeecccceeecC
Q 039367 8 KFKSAYHRVLSK 19 (86)
Q Consensus 8 ~~kS~~HRVv~~ 19 (86)
.+||-+||+.+.
T Consensus 5 ~lksKiHratVT 16 (26)
T 1uhe_B 5 MLYSKIHRATIT 16 (26)
T ss_dssp EEEEEEEEEECC
T ss_pred HhhhhhcceEEe
Confidence 578899999885
No 12
>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13
Probab=37.42 E-value=21 Score=21.90 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=19.0
Q ss_pred cccceeecCCCCCceeEEEeeccC
Q 039367 11 SAYHRVLSKKEGSRISIGSFFMNN 34 (86)
Q Consensus 11 S~~HRVv~~~~~~R~Sia~F~~p~ 34 (86)
-..|||. .++..|+-+-|++.|+
T Consensus 79 q~wHrVe-~sdD~~f~leFyc~~~ 101 (119)
T 3dl3_A 79 QYWHRIE-LSDDAQFNINFWSDQD 101 (119)
T ss_dssp TCEEEEE-ECTTCEEEEEEEECC-
T ss_pred CceEEEE-ECCCeEEEEEEEECch
Confidence 3579999 6778899999999997
No 13
>2op5_A Hypothetical protein; ferredoxin-like protein, structural genomics, joint center F structural genomics, JCSG; 2.20A {Uncultured marine organism} SCOP: d.58.4.22
Probab=31.89 E-value=43 Score=19.67 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=20.5
Q ss_pred CCeeecccceeecCCCCCceeEEEeeccC
Q 039367 6 NDKFKSAYHRVLSKKEGSRISIGSFFMNN 34 (86)
Q Consensus 6 nG~~kS~~HRVv~~~~~~R~Sia~F~~p~ 34 (86)
.|.++-++-.|.+ .++.|+|++|-+...
T Consensus 46 aglirhviskvwn-keqhrismvfeydsk 73 (117)
T 2op5_A 46 AGLIRHVISKVWN-KEQHRISMVFEYDSK 73 (117)
T ss_dssp HTEEEEEEEEECC-TTCCEEEEEEEESCH
T ss_pred hhHHHHHHHHHhh-hhhceeEEEEEeccH
Confidence 3566666667665 478999999988764
No 14
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=26.50 E-value=48 Score=22.15 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=15.8
Q ss_pred ccceeecCCCCCceeEEEeeccC
Q 039367 12 AYHRVLSKKEGSRISIGSFFMNN 34 (86)
Q Consensus 12 ~~HRVv~~~~~~R~Sia~F~~p~ 34 (86)
.+|.|.. ....|+||+..+.-.
T Consensus 193 ~~H~V~p-~~~~R~sit~W~~~~ 214 (247)
T 2hbt_A 193 NPHEVQP-AYATRYAITVWYFDA 214 (247)
T ss_dssp CCEEECC-BSSCEEEEEEEEEEH
T ss_pred ceeeecc-CCCEEEEEEEEEcCC
Confidence 5898875 457899998765543
No 15
>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13
Probab=24.88 E-value=44 Score=20.62 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=20.7
Q ss_pred cccceeecCCCCCceeEEEeeccC
Q 039367 11 SAYHRVLSKKEGSRISIGSFFMNN 34 (86)
Q Consensus 11 S~~HRVv~~~~~~R~Sia~F~~p~ 34 (86)
-..|||..-++.-|+-+-||+.|+
T Consensus 80 q~wH~Ve~lsdd~~f~leFyc~~~ 103 (127)
T 3bb6_A 80 EKWHNIEAMTDDTYFNIDFFVAPE 103 (127)
T ss_dssp SCEEEEEESSTTCEEEEEEEECHH
T ss_pred CCcEEEEEcCCCEEEEEEEEeCCc
Confidence 457999987778899999999997
Done!