BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039373
(300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUJ5|EBP2_ARATH Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis
thaliana GN=At3g22660 PE=2 SV=1
Length = 293
Score = 341 bits (875), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 185/291 (63%), Positives = 224/291 (76%), Gaps = 10/291 (3%)
Query: 12 DEDGFEDEDVSELNEEVSESESDSEGEEDVKLAEPSKQAVYNRDGLEEKLQDISWLENAG 71
DE DED + +E S S+SD+E E KLAEP+K A+YNRDGL +KLQDISW E+
Sbjct: 11 DEMNMIDEDDATDSEAESLSDSDTENEITEKLAEPTKTAIYNRDGLLDKLQDISWPEDVD 70
Query: 72 WIHKLTIDIDQEQEVDVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMV 131
W HKLT++IDQ VDVNDDL RE +FYTQALEGTR+AF KL MG+ FLRPA+YYAEMV
Sbjct: 71 WTHKLTVEIDQGGAVDVNDDLARETAFYTQALEGTREAFGKLNEMGVNFLRPANYYAEMV 130
Query: 132 KSDAHMEKVKRRLLSEQKEIEEAAERKKAREAKKLAKEIQVQKTKERAKQKKEEIESVKK 191
KSD HMEKVK RLL E+K+IEE+ ER+KAR+ K++AKE+Q QK KERAK+KK+ IESVKK
Sbjct: 131 KSDVHMEKVKSRLLHEKKQIEESEERRKARDNKRMAKEVQSQKMKERAKEKKDNIESVKK 190
Query: 192 WRKQRQQSGFAGEVDKGELDLAFEGGKSFER-SNKKRPGVSPGDRSGGKARKSGGGDSGK 250
WRKQRQQSGF+ + GE +L FE GKSF+R KKRPGVSPGDRSGGK R + S
Sbjct: 191 WRKQRQQSGFSDKA--GEPELDFESGKSFQRGGGKKRPGVSPGDRSGGKGRPT----SRM 244
Query: 251 GKKKKNRDFRNSKFGFGGKKSMKKQNTSDTTDDLR-GFSKGDGAGNKRRKR 300
G KK R+FR+SKFG GG+K + KQNT++TT+D + GF G +GNKR+KR
Sbjct: 245 GNKK--REFRDSKFGHGGRKGLSKQNTAETTNDFKGGFRGGKASGNKRQKR 293
>sp|O13802|EBP2_SCHPO Probable rRNA-processing protein ebp2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ebp2 PE=1 SV=1
Length = 333
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 129/260 (49%), Gaps = 41/260 (15%)
Query: 33 SDSEG---EEDVKLAEPSKQAVYNRDGLE---EKLQ---DISWLENAGWIHKLTIDIDQE 83
SD EG EED L K A+ N LE E+++ DIS++EN K I I+
Sbjct: 73 SDLEGIELEEDADLIRKRKLAINNTVALENIYERIKYPDDISFVENQAVTTKEPIIIE-- 130
Query: 84 QEVDVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRR 143
+V DDL RE +FY Q + + AF KL+ + RP DY+AEM+KSD HMEKV++
Sbjct: 131 ---NVEDDLARELAFYKQGVSSVKAAFAKLREANVLISRPHDYFAEMLKSDDHMEKVRQE 187
Query: 144 LLSEQKEIEEAAERKKAREAKKLAKEIQVQKTKERAKQKKEEIESVKKWRKQRQQSGFAG 203
L+ E + + + KK RE KK K++Q+ K +ER ++KKE +E + +++
Sbjct: 188 LIKEATAKKLSQQAKKQRELKKFGKQVQLAKQEERQREKKETLEKINLLKRKHTGGDLTT 247
Query: 204 EVDKGELDLAFEGGKSFE---RSNKKRPGVSPGDRSGGKARKSGGGDSGKGKKKKNRDFR 260
E D ++ L+ +F+ RS K RP +P R +
Sbjct: 248 E-DDFDIALSSASADTFKKGSRSTKSRPQPNP-----------------------KRQKK 283
Query: 261 NSKFGFGGKKSMKKQNTSDT 280
N K+GFGG K K N D+
Sbjct: 284 NEKYGFGGPKHRSKSNDLDS 303
>sp|P36049|EBP2_YEAST rRNA-processing protein EBP2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=EBP2 PE=1 SV=1
Length = 427
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 144/281 (51%), Gaps = 45/281 (16%)
Query: 33 SDSEGEEDVKLAEPSKQAVYNRDGLEEKLQ--DISWLENAGWIHK-LTIDIDQEQEV-DV 88
SD E + D + K V N ++ L+ + W +++ H+ +T + + ++ + D+
Sbjct: 177 SDVEFDSDADVVPHHKLTVNNTKAMKHALERVQLPWKKHSFQEHQSVTSETNTDEHIKDI 236
Query: 89 NDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSEQ 148
DD +RE +FY Q+L+ A ++L+ + +PF RP DY+AEMVKSD HM+K+K +L+ E
Sbjct: 237 YDDTERELAFYKQSLDAVLVARDELKRLKVPFKRPLDYFAEMVKSDEHMDKIKGKLIEEA 296
Query: 149 KEIEEAAERKKAREAKKLAKEIQVQKTKERAKQKKEEIESVKKWRKQRQQSGFAGEVDKG 208
+ + E ++ R+ KK K++Q ++R +K+E +E +K + +R+ + E+D
Sbjct: 297 SDKKAREEARRQRQLKKFGKQVQNATLQKRQLEKRETLEKIKSLKNKRKHN----EIDHS 352
Query: 209 ELDLAFE---GGKSFERSNKKRPGVSPGDRSGGKARKSGGGDSGKGKKKKNRDFRNSKFG 265
E ++ E GK F+R R GK R +N+K+G
Sbjct: 353 EFNVGVEEEVEGKRFDRG-----------RPNGK-----------------RAAKNAKYG 384
Query: 266 FGGKKSMKKQNTSDTTDDLRGFS------KGDGAGNKRRKR 300
GG K K++N + ++ D+ GFS K + G RR R
Sbjct: 385 QGGMKRFKRKNDATSSADVSGFSSRKMKGKTNRPGKSRRAR 425
>sp|Q9D903|EBP2_MOUSE Probable rRNA-processing protein EBP2 OS=Mus musculus GN=Ebna1bp2
PE=2 SV=1
Length = 306
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 147/274 (53%), Gaps = 43/274 (15%)
Query: 40 DVKLAEPSKQAVYNRDGLEEKL----QDISWLE----NAGWIHKLT------IDIDQEQE 85
+V L +P K+AV + GL++ L +D+ W+E G + +++ + DQ++
Sbjct: 37 NVVLEKP-KKAVNDVSGLKQCLAEFRRDLEWVERLDVTLGPVPEVSETQPTPQNQDQKKG 95
Query: 86 VDVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLL 145
V+ DD +RE SFY QA +L + +P RP DY+AEM KSD M+K++++L
Sbjct: 96 VNPEDDFQREMSFYRQAQAAVLAVLPRLHQLQVPTKRPTDYFAEMAKSDQQMQKIRQKLQ 155
Query: 146 SEQKEIEEAAERKKAREAKKLAKEIQVQKTKERAKQKKEEIESVKKWRKQRQQSGFAGEV 205
++Q +E++ + K+ R +K K++Q + ++R ++K + ++KK++K GF+ ++
Sbjct: 156 TKQAAMEKSEKAKQLRALRKYGKKVQTEVLQKRQREKAHMMNAIKKYQK-----GFSDKL 210
Query: 206 DKGELDLAFEGGKSFERSNKKRPGVSPGDRSGGKARKSGGGDSGKGKKKKNRDFRNSKFG 265
D E D K ERS K +GGK ++ G + K R ++N KFG
Sbjct: 211 DFLEGD-----QKPVERSAK----------AGGKGQQMSKGPNAK------RRYKNQKFG 249
Query: 266 FGGKKSMKKQNTSDTTDDLRGFSK--GDGAGNKR 297
FGGKK K NT ++ DD+ F G G++R
Sbjct: 250 FGGKKKGSKWNTKESYDDVSSFRAKVAHGKGSRR 283
>sp|Q09958|EBP2_CAEEL Probable rRNA-processing protein EBP2 homolog OS=Caenorhabditis
elegans GN=C18A3.3 PE=1 SV=2
Length = 340
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 95/157 (60%), Gaps = 11/157 (7%)
Query: 48 KQAVYNRDG-LEEKLQDISWLENAGWIHKLTIDIDQEQEVDV---NDDLKREASFYTQAL 103
K+ + N+ ++EKL +I+ ++ W+ L + + E+D NDD +RE +FY QA
Sbjct: 82 KRPIINKSAEMKEKLAEIT--KDLPWVETLEV-VTPHSEMDKKVENDDFQRELNFYKQAE 138
Query: 104 EGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLL--SEQKEIEEAAERKKAR 161
+ + A+ +L ++G+ LRP DYYAEM KSD HM+KV++RLL E KE +EA R R
Sbjct: 139 KAVQIAYPRLLNLGIKVLRPTDYYAEMAKSDTHMQKVRKRLLGIQEMKERQEAFRR--IR 196
Query: 162 EAKKLAKEIQVQKTKERAKQKKEEIESVKKWRKQRQQ 198
E KK A ++Q + + +KK E+VKK +K +Q
Sbjct: 197 EEKKFAVKVQKEVLAAKNTEKKNLAEAVKKHKKGMKQ 233
>sp|Q9I8J6|EBP2_XENLA Probable rRNA-processing protein EBP2 OS=Xenopus laevis GN=ebna1bp2
PE=2 SV=1
Length = 312
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 110/208 (52%), Gaps = 20/208 (9%)
Query: 3 LAHKESTFSDEDGFEDEDVSELNE-EVSESESDSEGEEDVKLAEPSKQAVYN-RDGLEEK 60
L H++ + + D D D SEL + E+ E+ S + + + + K+ +N GL++
Sbjct: 2 LHHEDESSPESDS--DFDASELTDKELQEAFSQGKLKPGLNVVLEGKKKPFNDASGLKQS 59
Query: 61 LQDISWLENAGWIHKLTIDID-------QEQEVDVN-------DDLKREASFYTQALEGT 106
L+D+ W+ +L + +D Q + D N DD +RE FY QA
Sbjct: 60 LKDLK--NELPWVERLDVTVDPVVDTTGQNGQTDPNTSDINAEDDFQREMCFYRQAQAAV 117
Query: 107 RQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSEQKEIEEAAERKKAREAKKL 166
+ +L+ + + RP DY+AEM K+D HM+K++ +L +Q +E++ + K+ R +K
Sbjct: 118 LYSLPRLRKLKVATKRPDDYFAEMAKTDQHMQKIRHKLQLKQASMEKSEKAKQLRALRKY 177
Query: 167 AKEIQVQKTKERAKQKKEEIESVKKWRK 194
K++QV+ ++R K+K + +KK++K
Sbjct: 178 GKKVQVEVLQKRQKEKSAMVTQIKKYQK 205
>sp|Q99848|EBP2_HUMAN Probable rRNA-processing protein EBP2 OS=Homo sapiens GN=EBNA1BP2
PE=1 SV=2
Length = 306
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 133/271 (49%), Gaps = 42/271 (15%)
Query: 43 LAEPSKQAVYNRDGLEEKL----QDISWLENAGWIHKLTIDI----------DQEQEVDV 88
+ E K+AV + +GL++ L +D+ W+E +I ++ VD
Sbjct: 39 VLEGPKKAVNDVNGLKQCLAEFKRDLEWVERLDVTLGPVPEIGGSEAPAPQNKDQKAVDP 98
Query: 89 NDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSEQ 148
DD +RE SFY QA +L + +P RP DY+AEM KSD M+K++++L ++Q
Sbjct: 99 EDDFQREMSFYRQAQAAVLAVLPRLHQLKVPTKRPTDYFAEMAKSDLQMQKIRQKLQTKQ 158
Query: 149 KEIEEAAERKKAREAKKLAKEIQVQKTKERAKQKKEEIESVKKWRKQRQQSGFAGEVDKG 208
+E + + K+ R +K K++Q + ++R ++K + ++KK+ Q GF+ ++D
Sbjct: 159 AAMERSEKAKQLRALRKYGKKVQTEVLQKRQQEKAHMMNAIKKY-----QKGFSDKLD-- 211
Query: 209 ELDLAFEGGKSFERSNKKRPGVSPGDRSGGKARKSGGGDSGKGKKKKNRDFRNSKFGFGG 268
EG + KK +G K ++ G S K R ++N KFGFGG
Sbjct: 212 ----FLEGDQKPLAQRKK---------AGAKGQQMRKGPSAK------RRYKNQKFGFGG 252
Query: 269 KKSMKKQNTSDTTDDLRGF--SKGDGAGNKR 297
KK K NT ++ DD+ F G G KR
Sbjct: 253 KKKGSKWNTRESYDDVSSFRAKTAHGRGLKR 283
>sp|Q9V9Z9|EBP2_DROME Probable rRNA-processing protein EBP2 homolog OS=Drosophila
melanogaster GN=CG1542 PE=2 SV=1
Length = 307
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 88 VNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSE 147
V +D KRE F+ QA +A +L +G+ RP DY+AEM KSD HM+KV+ L+++
Sbjct: 114 VLNDFKREMLFHRQAQSAVLEAIPRLHELGIKTRRPDDYFAEMAKSDEHMQKVRANLMAK 173
Query: 148 QKEIEEAAERKKAREAKK----LAKEIQVQKTKE 177
Q+ ++ K+ RE +K LAK+ +VQ+ E
Sbjct: 174 QQGQAKSERIKQIREQRKMGKMLAKQTKVQREAE 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.127 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,733,181
Number of Sequences: 539616
Number of extensions: 5701962
Number of successful extensions: 51123
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 2029
Number of HSP's that attempted gapping in prelim test: 39167
Number of HSP's gapped (non-prelim): 9183
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 61 (28.1 bits)