Query 039373
Match_columns 300
No_of_seqs 140 out of 231
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 15:15:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9b_A Gtfii-I, general transc 17.3 46 0.0016 27.1 1.3 12 116-127 61-72 (109)
2 4f6r_C Stathmin-like domain R1 16.3 3.9E+02 0.013 20.8 6.8 37 145-191 45-81 (87)
3 1lv4_A Catestatin, chromograni 15.9 50 0.0017 20.5 0.9 17 255-271 3-19 (26)
4 3oja_A Leucine-rich immune mol 14.5 7.3E+02 0.025 23.1 9.6 67 128-196 403-469 (487)
5 3gr1_A Protein PRGH; type III 14.5 1.8E+02 0.0062 26.2 4.6 97 46-143 52-177 (227)
6 2kfe_A Meucin-24; alpha-helix, 14.3 65 0.0022 20.1 1.1 19 134-152 4-22 (26)
7 2y9j_Y Lipoprotein PRGK, prote 13.5 3.2E+02 0.011 23.0 5.7 38 106-143 45-86 (170)
8 3gr0_A Protein PRGH; type III 13.4 2.1E+02 0.0072 25.2 4.6 97 46-143 52-177 (197)
9 2d99_A Muscle, general transcr 13.0 71 0.0024 25.2 1.3 13 116-128 51-63 (90)
10 3p1f_A CREB-binding protein; s 12.2 92 0.0032 24.3 1.8 45 101-145 14-65 (119)
No 1
>2d9b_A Gtfii-I, general transcription factor II-I, TFII-I; structural genomics, unknown function, NPPSFA; NMR {Homo sapiens} PDB: 2e3l_A
Probab=17.27 E-value=46 Score=27.14 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=10.4
Q ss_pred CCCCCCCCCcch
Q 039373 116 MGLPFLRPADYY 127 (300)
Q Consensus 116 ~gipf~RP~DYf 127 (300)
.||+|.||..|=
T Consensus 61 egi~fR~P~~Yg 72 (109)
T 2d9b_A 61 EGVAFKHPENYD 72 (109)
T ss_dssp TTCCSCCTTSSC
T ss_pred CCCccCCccccC
Confidence 589999999994
No 2
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=16.34 E-value=3.9e+02 Score=20.81 Aligned_cols=37 Identities=41% Similarity=0.461 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039373 145 LSEQKEIEEAAERKKAREAKKLAKEIQVQKTKERAKQKKEEIESVKK 191 (300)
Q Consensus 145 l~eq~~ie~~E~~rk~Re~KKfgKqVQ~ek~~eR~keKk~~le~Ik~ 191 (300)
-+.|..++++|++|+.++.. +.++-.+|++-.+.|-+
T Consensus 45 eeIqkKLeAAeERRks~EA~----------~L~~Laekreh~~EV~k 81 (87)
T 4f6r_C 45 EEIQKKLEAAEERRKAHFAA----------MLERLQEKDKHAEEVRK 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHh
Confidence 34566678889988876543 44455566665555543
No 3
>1lv4_A Catestatin, chromogranin A; glycoprotein, amidation, phosphorylation, signaling protein; NMR {Synthetic} SCOP: j.95.1.1
Probab=15.86 E-value=50 Score=20.46 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=12.8
Q ss_pred cchhhhcccCCCCCCCC
Q 039373 255 KNRDFRNSKFGFGGKKS 271 (300)
Q Consensus 255 ~KR~~Kd~KfGFGGkKr 271 (300)
+|-..+.-+|||+|.--
T Consensus 3 MKlsFRar~Y~Fr~Pg~ 19 (26)
T 1lv4_A 3 MKLSFRARAYGFRGPGP 19 (26)
T ss_dssp SCSCSCCCSSSSCSSCT
T ss_pred ceEeeeeeecccCCCcc
Confidence 55667788999998753
No 4
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=14.47 E-value=7.3e+02 Score=23.11 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=39.3
Q ss_pred hhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039373 128 AEMVKSDAHMEKVKRRLLSEQKEIEEAAERKKAREAKKLAKEIQVQKTKERAKQKKEEIESVKKWRKQR 196 (300)
Q Consensus 128 AEMvKSD~HM~KVr~kLl~eq~~ie~~E~~rk~Re~KKfgKqVQ~ek~~eR~keKk~~le~Ik~~kK~R 196 (300)
++++-+-.-|.++..+.=...+. ...|..+..++.+.+..++|.-+. +.+.-++.+-+-.+.+...+
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 403 TEEQSPLQLLRAIVKRYEEMYVE-QQSVQNNAIRDWDMYQHKETQLAE-ENARLKKLNGEADLALASAN 469 (487)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHHHHH-HHHHhhcchhhhhhhhhHHHHHHH-HhhhhhhhhhhhhhhhHhcc
Confidence 44455555566666555333333 344666677888888877776655 55555666555555555433
No 5
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=14.45 E-value=1.8e+02 Score=26.18 Aligned_cols=97 Identities=10% Similarity=0.127 Sum_probs=60.4
Q ss_pred CCcccccCHHHHHHHHHccccccCCCcc--eeeecccCCCccC--C----CcchH---------HHHHHHHHH-------
Q 039373 46 PSKQAVYNRDGLEEKLQDISWLENAGWI--HKLTIDIDQEQEV--D----VNDDL---------KREASFYTQ------- 101 (300)
Q Consensus 46 ~~k~~inN~~~L~~kL~~i~~~~~lpWi--E~l~vt~~~~~~v--d----v~DDl---------~RE~aFY~Q------- 101 (300)
..+..|-+...+...++.. +....||+ .+++++.+..+.+ . ....- .+.+-|+++
T Consensus 52 ~~~~~V~~~~~~~~~i~~~-l~~~~P~l~~~~i~l~~P~~Pvl~l~~~r~~~~~~~~~~L~~~l~~~~Pya~~v~I~~~s 130 (227)
T 3gr1_A 52 DKNARVINENEENKRISIW-LDTYYPQLAYYRIHFDEPRKPVFWLSRQRNTMSKKELEVLSQKLRALMPYADSVNITLMD 130 (227)
T ss_dssp TTTEEEECHHHHHHHHHHH-HHHHCTTCCEEEEECSSTTSCEEEEETTTCCCCHHHHHHHHHHHHHHCTTCSCCEEEEEC
T ss_pred cCCeEEEehHHHHHHHHHH-HHhcCCceEEEEEEcCCCCCCEEEEEeccccCCHHHHHHHHHHHHHhCCccccceEEEcC
Confidence 3677777888888888875 45679999 6777776544333 1 11111 112222221
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCc-----chhhccCChHHHHHHHHH
Q 039373 102 ALEGTRQAFEKLQSMGLPFLRPAD-----YYAEMVKSDAHMEKVKRR 143 (300)
Q Consensus 102 Al~av~~a~~~L~~~gipf~RP~D-----YfAEMvKSD~HM~KVr~k 143 (300)
--+.+.+|..-|.+++|||.|=+. |+-.=.=+|.++..++.=
T Consensus 131 ~~~l~~~Ae~GL~~~ni~yr~i~~~~~vtFiI~~~L~D~~l~~l~~f 177 (227)
T 3gr1_A 131 DVTAAGQAEAGLKQQALPYSRRNHKGGVTFVIQGALDDVEILRARQF 177 (227)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEETTEEEEEECSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHhcCCceEEEecCCeEEEEEcCCCCHHHHHHHHHH
Confidence 235678899999999999988432 333334478888877653
No 6
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=14.30 E-value=65 Score=20.06 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 039373 134 DAHMEKVKRRLLSEQKEIE 152 (300)
Q Consensus 134 D~HM~KVr~kLl~eq~~ie 152 (300)
-+.|.+|+.+|..-...|+
T Consensus 4 kei~~kiK~kl~~akdK~k 22 (26)
T 2kfe_A 4 REFMSNLKEKLSGVKEKMK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4689999999987666554
No 7
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=13.53 E-value=3.2e+02 Score=23.00 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCCCCCCCCcc---hhhc-cCChHHHHHHHHH
Q 039373 106 TRQAFEKLQSMGLPFLRPADY---YAEM-VKSDAHMEKVKRR 143 (300)
Q Consensus 106 v~~a~~~L~~~gipf~RP~DY---fAEM-vKSD~HM~KVr~k 143 (300)
+..|+-.|...|+|-..+..| |-.+ +=+=+.|++||-.
T Consensus 45 ~~~ar~~La~~GLP~~~~~g~~elf~~~~~g~T~~~e~~~~~ 86 (170)
T 2y9j_Y 45 FTAAVYWIKTYQLPPRPRVEIAQMFPADSLVSSPRAEKARLY 86 (170)
T ss_dssp HHHHHHHHHHTTCSCCCCCCTTCCTTTCSCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCHHHHhCCCCCCCCHHHHHHHHH
Confidence 346778899999998777666 5532 3344567776643
No 8
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=13.39 E-value=2.1e+02 Score=25.16 Aligned_cols=97 Identities=11% Similarity=0.148 Sum_probs=60.1
Q ss_pred CCcccccCHHHHHHHHHccccccCCCcc--eeeecccCCCccC--C----Ccch---------HHHHHHHHHH-------
Q 039373 46 PSKQAVYNRDGLEEKLQDISWLENAGWI--HKLTIDIDQEQEV--D----VNDD---------LKREASFYTQ------- 101 (300)
Q Consensus 46 ~~k~~inN~~~L~~kL~~i~~~~~lpWi--E~l~vt~~~~~~v--d----v~DD---------l~RE~aFY~Q------- 101 (300)
..+..|-+...+...++.. +....||+ .+++++.+..+.+ . .-.. |.+.+-|+++
T Consensus 52 ~e~~~Vi~~~~e~~~i~~~-L~~~~P~l~~~~i~l~~P~~P~l~ls~~r~~l~~~~~~~L~~~l~~~~pya~~v~i~~~s 130 (197)
T 3gr0_A 52 DKNARVINENEENKRISIW-LDTYYPQLAYYRIHFDEPRKPVFWLSRQRNTMSKKELEVLSQKLRALMPYADSVNITLMD 130 (197)
T ss_dssp TTTEEEECHHHHHHHHHHH-HHHHSTTCCEEEEECSSTTSCEEEEESSSCCCCHHHHHHHHHHHHHHCTTCSCCEEEEEC
T ss_pred CCCcEEeehHHHHHHHHHH-HHhcCCceeEEEEecCCCCCCEEEEEeccccCCHHHHHHHHHHHHHhCCccceeEEEEcC
Confidence 4777788888888887775 45679999 7777776543332 1 1111 1222222221
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCc-----chhhccCChHHHHHHHHH
Q 039373 102 ALEGTRQAFEKLQSMGLPFLRPAD-----YYAEMVKSDAHMEKVKRR 143 (300)
Q Consensus 102 Al~av~~a~~~L~~~gipf~RP~D-----YfAEMvKSD~HM~KVr~k 143 (300)
--+.+.+|..-|.+++|||.|=+. |+-.=.=+|.++..++.=
T Consensus 131 ~~~l~~~Ae~GL~~~ni~yr~i~~~~~vtFiI~~~L~D~~l~~l~~f 177 (197)
T 3gr0_A 131 DVTAAGQAEAGLKQQALPYSRRNHKGGVTFVIQGALDDVEILRARQF 177 (197)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEETTEEEEEECSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHhcCCceEEEecCCeEEEEEcCCCCHHHHHHHHHH
Confidence 235678899999999999987431 333333477777777653
No 9
>2d99_A Muscle, general transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=12.99 E-value=71 Score=25.21 Aligned_cols=13 Identities=54% Similarity=0.933 Sum_probs=10.7
Q ss_pred CCCCCCCCCcchh
Q 039373 116 MGLPFLRPADYYA 128 (300)
Q Consensus 116 ~gipf~RP~DYfA 128 (300)
.||+|.||..|=+
T Consensus 51 eGi~fr~P~~yg~ 63 (90)
T 2d99_A 51 EGLAFRRPAEYDP 63 (90)
T ss_dssp SSCCSCCTTTSCH
T ss_pred CCCccCCccccCH
Confidence 5899999999843
No 10
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=12.19 E-value=92 Score=24.27 Aligned_cols=45 Identities=36% Similarity=0.528 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcc-------hhhccCChHHHHHHHHHHH
Q 039373 101 QALEGTRQAFEKLQSMGLPFLRPADY-------YAEMVKSDAHMEKVKRRLL 145 (300)
Q Consensus 101 QAl~av~~a~~~L~~~gipf~RP~DY-------fAEMvKSD~HM~KVr~kLl 145 (300)
+++..++..+-.......||..|.|- |.+.|+..--+..|+.+|-
T Consensus 14 ~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~ 65 (119)
T 3p1f_A 14 QALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLD 65 (119)
T ss_dssp HHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHh
Confidence 44444554444445578899998772 5578888888899999984
Done!