Query 039373
Match_columns 300
No_of_seqs 140 out of 231
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 15:15:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039373.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039373hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cjxa2 d.32.1.3 (A:154-356) 4 36.6 7.3 0.00053 31.8 2.1 26 106-131 95-121 (203)
2 d1wdka2 a.100.1.3 (A:621-715) 24.3 11 0.00077 27.4 0.8 30 103-133 60-89 (95)
3 d3dwya1 a.29.2.1 (A:1084-1197) 23.5 15 0.0011 26.9 1.7 46 101-146 9-61 (114)
4 d1q60a_ d.288.1.1 (A:) General 18.1 20 0.0015 26.9 1.3 11 116-126 51-61 (99)
5 d1sqia2 d.32.1.3 (A:157-366) 4 15.4 33 0.0024 28.0 2.1 22 106-127 118-140 (210)
6 d7reqb1 c.1.19.1 (B:16-475) Me 14.2 40 0.0029 30.5 2.5 39 91-132 232-281 (460)
7 d1uzca_ a.159.2.1 (A:) Hypa/FB 11.1 51 0.0037 22.3 1.7 46 55-100 17-62 (69)
8 d2hs5a1 a.4.5.6 (A:25-93) Puta 9.7 30 0.0022 23.1 0.0 27 98-124 34-60 (69)
9 d1wvia_ c.108.1.14 (A:) Putati 9.3 50 0.0036 26.0 1.3 29 104-132 21-56 (253)
10 d1twua_ d.32.1.8 (A:) Hypothet 9.2 98 0.0072 21.7 2.9 26 103-128 86-111 (137)
No 1
>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}
Probab=36.59 E-value=7.3 Score=31.77 Aligned_cols=26 Identities=27% Similarity=0.636 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCCCCCC-Ccchhhcc
Q 039373 106 TRQAFEKLQSMGLPFLRP-ADYYAEMV 131 (300)
Q Consensus 106 v~~a~~~L~~~gipf~RP-~DYfAEMv 131 (300)
+..++..|++.||+|..| +.||-+++
T Consensus 95 I~aav~~L~~~Gv~fL~~pp~~Yy~~l 121 (203)
T d1cjxa2 95 LVKTWDALKKIGMRFMTAPPDTYYEML 121 (203)
T ss_dssp HHHHHHHHHHTTCCBCCCCCHHHHHTH
T ss_pred HHHHHHHHHhcCCccccCchhhHHHHH
Confidence 456778899999999875 57887764
No 2
>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}
Probab=24.30 E-value=11 Score=27.36 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcchhhccCC
Q 039373 103 LEGTRQAFEKLQSMGLPFLRPADYYAEMVKS 133 (300)
Q Consensus 103 l~av~~a~~~L~~~gipf~RP~DYfAEMvKS 133 (300)
+..+...+..|.+.| |..+|+..+.+|||+
T Consensus 60 ~~~~~~~~~~l~~~g-~r~~p~~~L~~~~~~ 89 (95)
T d1wdka2 60 VAEFVALADQYAELG-ALYHPTAKLREMAKN 89 (95)
T ss_dssp HHHHHHHHHHTGGGC-GGGCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhC-CCCCCCHHHHHHHHh
Confidence 344455556677788 888999999999876
No 3
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.47 E-value=15 Score=26.92 Aligned_cols=46 Identities=35% Similarity=0.530 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCc-------chhhccCChHHHHHHHHHHHH
Q 039373 101 QALEGTRQAFEKLQSMGLPFLRPAD-------YYAEMVKSDAHMEKVKRRLLS 146 (300)
Q Consensus 101 QAl~av~~a~~~L~~~gipf~RP~D-------YfAEMvKSD~HM~KVr~kLl~ 146 (300)
+++..++..+-.-.....||..|.| =|.++|+..--+..|+.+|..
T Consensus 9 ~~l~~~l~~l~~~~p~a~pF~~pvd~~~~~~pdY~~iI~~PmdL~tI~~kl~~ 61 (114)
T d3dwya1 9 QALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDT 61 (114)
T ss_dssp HHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcCCCccCCCCChhhccCCCHHHHcCCCCCHHHHHHHHHc
Confidence 5554444444322346789999954 156889988889999999854
No 4
>d1q60a_ d.288.1.1 (A:) General transcription factor II-I {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.10 E-value=20 Score=26.86 Aligned_cols=11 Identities=45% Similarity=1.129 Sum_probs=9.8
Q ss_pred CCCCCCCCCcc
Q 039373 116 MGLPFLRPADY 126 (300)
Q Consensus 116 ~gipf~RP~DY 126 (300)
.||||.||.-|
T Consensus 51 egI~Fr~P~~y 61 (99)
T d1q60a_ 51 EGVPFRRPSTF 61 (99)
T ss_dssp TTCCSCCTTTS
T ss_pred CCCcCCCCCcc
Confidence 48999999988
No 5
>d1sqia2 d.32.1.3 (A:157-366) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.35 E-value=33 Score=28.00 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCCCCCCCc-ch
Q 039373 106 TRQAFEKLQSMGLPFLRPAD-YY 127 (300)
Q Consensus 106 v~~a~~~L~~~gipf~RP~D-Yf 127 (300)
+..|...|++.||+|..|++ ||
T Consensus 118 I~~av~~L~~~Gv~fL~~P~~YY 140 (210)
T d1sqia2 118 IITTIRHLRERGMEFLAVPSSYY 140 (210)
T ss_dssp HHHHHHHHHHHTCCBCCCCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCcchh
Confidence 45677889999999999887 77
No 6
>d7reqb1 c.1.19.1 (B:16-475) Methylmalonyl-CoA mutase beta subunit, domain 1 {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=14.18 E-value=40 Score=30.51 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----------CCCCCcchhhccC
Q 039373 91 DLKREASFYTQALEGTRQAFEKLQSMGLP-----------FLRPADYYAEMVK 132 (300)
Q Consensus 91 Dl~RE~aFY~QAl~av~~a~~~L~~~gip-----------f~RP~DYfAEMvK 132 (300)
+..-||+| +|+++.+-+..|.+.|++ |.=..|||-|+.|
T Consensus 232 t~~qELA~---~LA~~~~yl~~~~~~g~~~~~~~~~i~f~~s~g~~~F~eIAK 281 (460)
T d7reqb1 232 GDVAELAW---ALATGAEYVRALVEQGFTATEAFDTINFRVTATHDQFLTIAR 281 (460)
T ss_dssp CHHHHHHH---HHHHHHHHHHHHHHTTCCHHHHHTTEEEEEEECSCHHHHHHH
T ss_pred CHHHHHHH---HHHHHHHHHHHHHHcCCCHHHHhcceEEEEecCCcHHHHHHH
Confidence 34568887 788888888888888887 4567888888654
No 7
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.10 E-value=51 Score=22.30 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=33.6
Q ss_pred HHHHHHHHccccccCCCcceeeecccCCCccCCCcchHHHHHHHHH
Q 039373 55 DGLEEKLQDISWLENAGWIHKLTIDIDQEQEVDVNDDLKREASFYT 100 (300)
Q Consensus 55 ~~L~~kL~~i~~~~~lpWiE~l~vt~~~~~~vdv~DDl~RE~aFY~ 100 (300)
++...-|.+..++...+|-..+.....++.---|.+.-.||-.|..
T Consensus 17 ~~F~~LL~e~~v~~~~~W~~~~~~~~~DpRy~ai~~~~eRe~lF~e 62 (69)
T d1uzca_ 17 QAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNA 62 (69)
T ss_dssp HHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHhccCcchhhcCCHHHHHHHHHH
Confidence 4566778888888889998766666555554456677899999964
No 8
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=9.67 E-value=30 Score=23.06 Aligned_cols=27 Identities=19% Similarity=0.057 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 039373 98 FYTQALEGTRQAFEKLQSMGLPFLRPA 124 (300)
Q Consensus 98 FY~QAl~av~~a~~~L~~~gipf~RP~ 124 (300)
-|..+...|++|+.+|...|+-..+|.
T Consensus 34 ~~~vSr~tvr~Al~~L~~~Gli~~~~~ 60 (69)
T d2hs5a1 34 ALDVSRNTVREAFQILIEDRLVAHELN 60 (69)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 466788899999999999999888875
No 9
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}
Probab=9.29 E-value=50 Score=25.99 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCCCC-------CCCCcchhhccC
Q 039373 104 EGTRQAFEKLQSMGLPF-------LRPADYYAEMVK 132 (300)
Q Consensus 104 ~av~~a~~~L~~~gipf-------~RP~DYfAEMvK 132 (300)
..|.+++..|++.|+|| .||.+.+++++.
T Consensus 21 ~~a~e~l~~l~~~g~~~~~~TN~s~~~~~~~~~~l~ 56 (253)
T d1wvia_ 21 PAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLA 56 (253)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHH
Confidence 34566778899999996 678777776553
No 10
>d1twua_ d.32.1.8 (A:) Hypothetical protein YycE {Bacillus subtilis [TaxId: 1423]}
Probab=9.23 E-value=98 Score=21.66 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcchh
Q 039373 103 LEGTRQAFEKLQSMGLPFLRPADYYA 128 (300)
Q Consensus 103 l~av~~a~~~L~~~gipf~RP~DYfA 128 (300)
.+.+..++.+|.++||++..|.+-+.
T Consensus 86 ~~dv~~~~~~l~~~G~~~~~~~~~~~ 111 (137)
T d1twua_ 86 AVELAAITSKLKHMGYQEVESENPYW 111 (137)
T ss_dssp HHHHHHHHHHHHHTTCCEECCSSHHH
T ss_pred HHHHHHHHHHHHHCCCeEeCCCCCCC
Confidence 45566788899999999999887433
Done!