BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039375
         (311 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
           Pyrocoocus Woesei Alpha-Amylase
 pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
           Hyperthermophilic Archaeon Pyrococcus Woesei
 pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
           From The Hyperthermophilic Archaeon Pyrococcus Woesei In
           Complex With Acarbose
          Length = 435

 Score = 32.0 bits (71), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 16/85 (18%)

Query: 183 FEEVGNDKILLPSSSVSFRNLTKLVAVGCK-----ELIHLVTSSTAKT-------LVRLV 230
           + E G   I LP  S   + ++   ++G       +L       T +T       LVRL+
Sbjct: 37  WYEAGISAIWLPPPS---KGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLI 93

Query: 231 -TVQVYGCRAMTEVVINDKEGVDIE 254
            T   YG + + +VVIN + G D+E
Sbjct: 94  QTAHAYGIKVIADVVINHRAGGDLE 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,322,754
Number of Sequences: 62578
Number of extensions: 301209
Number of successful extensions: 613
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 2
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)