Query 039375
Match_columns 311
No_of_seqs 127 out of 1977
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 09:03:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.6 7.1E-16 1.5E-20 155.8 11.9 83 4-98 160-244 (968)
2 PLN03210 Resistant to P. syrin 99.6 1.3E-15 2.8E-20 155.2 13.5 103 194-301 795-909 (1153)
3 PLN00113 leucine-rich repeat r 99.6 8.6E-16 1.9E-20 155.2 12.0 86 1-98 181-268 (968)
4 PLN03210 Resistant to P. syrin 99.6 4.2E-14 9E-19 144.3 14.8 94 199-303 776-887 (1153)
5 KOG4194 Membrane glycoprotein 99.5 2.5E-14 5.4E-19 129.1 2.6 235 3-299 192-430 (873)
6 KOG4658 Apoptotic ATPase [Sign 99.3 6E-13 1.3E-17 130.4 4.9 259 4-305 567-849 (889)
7 KOG4194 Membrane glycoprotein 99.3 3.7E-13 8E-18 121.7 -1.1 91 199-302 315-408 (873)
8 KOG0444 Cytoskeletal regulator 99.2 5.3E-13 1.2E-17 121.7 -3.5 85 1-98 96-181 (1255)
9 KOG0444 Cytoskeletal regulator 99.1 3.8E-12 8.2E-17 116.3 -2.6 66 1-79 119-184 (1255)
10 KOG0472 Leucine-rich repeat pr 99.0 2.8E-12 6.1E-17 111.4 -7.3 89 194-296 451-539 (565)
11 KOG0617 Ras suppressor protein 99.0 8E-12 1.7E-16 96.8 -4.4 81 4-98 29-110 (264)
12 KOG0618 Serine/threonine phosp 98.9 4.8E-11 1E-15 113.3 -4.8 77 8-98 241-318 (1081)
13 PRK15387 E3 ubiquitin-protein 98.9 1.3E-08 2.8E-13 98.5 10.7 75 201-296 382-456 (788)
14 KOG0472 Leucine-rich repeat pr 98.9 3.1E-11 6.6E-16 105.0 -7.1 83 1-97 84-167 (565)
15 KOG4658 Apoptotic ATPase [Sign 98.8 6.1E-09 1.3E-13 102.6 4.8 259 1-304 588-866 (889)
16 KOG0618 Serine/threonine phosp 98.6 3.6E-09 7.9E-14 100.8 -1.5 80 7-100 44-124 (1081)
17 PRK15370 E3 ubiquitin-protein 98.6 6.9E-08 1.5E-12 93.8 7.0 71 9-98 200-270 (754)
18 PRK15387 E3 ubiquitin-protein 98.6 3.2E-07 6.9E-12 89.1 11.5 69 9-98 202-270 (788)
19 PF13855 LRR_8: Leucine rich r 98.6 6.1E-08 1.3E-12 63.6 4.1 60 8-79 1-60 (61)
20 PF14580 LRR_9: Leucine-rich r 98.6 3E-08 6.5E-13 79.1 2.8 79 4-98 15-96 (175)
21 KOG0617 Ras suppressor protein 98.5 1.1E-08 2.4E-13 79.5 -0.5 84 1-98 49-135 (264)
22 PRK15370 E3 ubiquitin-protein 98.5 4.7E-07 1E-11 88.1 8.3 222 8-302 178-404 (754)
23 KOG4237 Extracellular matrix p 98.4 5E-09 1.1E-13 91.2 -7.4 76 10-97 69-147 (498)
24 cd00116 LRR_RI Leucine-rich re 98.2 8.4E-08 1.8E-12 84.7 -3.1 89 5-100 20-118 (319)
25 cd00116 LRR_RI Leucine-rich re 98.2 3.1E-07 6.7E-12 81.1 0.3 83 4-99 47-146 (319)
26 PF12799 LRR_4: Leucine Rich r 98.2 2E-06 4.4E-11 52.0 3.7 39 8-49 1-39 (44)
27 KOG3207 Beta-tubulin folding c 98.1 2.9E-07 6.3E-12 81.4 -1.1 83 6-98 119-205 (505)
28 KOG1259 Nischarin, modulator o 98.1 2.5E-07 5.4E-12 78.3 -1.5 59 9-82 285-343 (490)
29 PLN03150 hypothetical protein; 98.1 3.5E-06 7.5E-11 81.2 5.3 77 10-98 420-498 (623)
30 PF14580 LRR_9: Leucine-rich r 98.1 3.4E-06 7.3E-11 67.4 3.7 81 3-98 36-121 (175)
31 COG4886 Leucine-rich repeat (L 98.0 5.9E-06 1.3E-10 75.4 3.7 176 4-240 112-290 (394)
32 PF13855 LRR_8: Leucine rich r 97.8 3.6E-05 7.8E-10 50.2 4.8 59 201-269 1-59 (61)
33 PF12799 LRR_4: Leucine Rich r 97.7 2.9E-05 6.4E-10 46.9 2.9 41 33-85 1-41 (44)
34 KOG0532 Leucine-rich repeat (L 97.6 3.6E-06 7.9E-11 77.0 -3.0 170 9-239 76-246 (722)
35 KOG4341 F-box protein containi 97.6 1.3E-06 2.7E-11 77.0 -5.7 96 199-298 344-439 (483)
36 PLN03150 hypothetical protein; 97.6 7.8E-05 1.7E-09 72.0 5.5 85 1-98 435-523 (623)
37 KOG3207 Beta-tubulin folding c 97.6 2E-05 4.4E-10 70.0 1.1 188 4-235 142-334 (505)
38 KOG2120 SCF ubiquitin ligase, 97.5 2.8E-06 6.1E-11 71.9 -4.8 57 9-77 186-243 (419)
39 KOG4237 Extracellular matrix p 97.4 4.3E-05 9.2E-10 67.2 0.9 83 4-98 270-354 (498)
40 KOG4341 F-box protein containi 97.3 1.1E-05 2.3E-10 71.3 -4.0 39 6-44 162-201 (483)
41 COG4886 Leucine-rich repeat (L 97.3 0.00018 4E-09 65.6 3.2 84 3-100 134-219 (394)
42 KOG0532 Leucine-rich repeat (L 97.3 4.7E-05 1E-09 70.0 -0.9 82 2-98 160-242 (722)
43 KOG2120 SCF ubiquitin ligase, 97.2 2.1E-05 4.5E-10 66.8 -3.4 136 139-295 236-373 (419)
44 KOG2982 Uncharacterized conser 97.1 0.00016 3.5E-09 61.5 1.1 91 199-304 197-287 (418)
45 KOG3665 ZYG-1-like serine/thre 97.1 5.1E-05 1.1E-09 73.5 -2.3 79 8-97 122-202 (699)
46 KOG3665 ZYG-1-like serine/thre 97.1 0.0003 6.6E-09 68.2 2.4 81 5-98 170-258 (699)
47 KOG4579 Leucine-rich repeat (L 96.9 0.00014 3.1E-09 54.9 -1.4 79 5-96 50-129 (177)
48 KOG1909 Ran GTPase-activating 96.8 0.00094 2E-08 58.0 3.1 67 198-270 238-309 (382)
49 KOG1259 Nischarin, modulator o 96.7 0.00045 9.8E-09 58.9 0.3 81 3-98 302-382 (490)
50 KOG0531 Protein phosphatase 1, 96.7 0.00068 1.5E-08 62.4 1.4 80 4-98 91-170 (414)
51 KOG1644 U2-associated snRNP A' 96.4 0.0069 1.5E-07 48.9 5.0 39 7-46 63-101 (233)
52 KOG2982 Uncharacterized conser 96.2 0.0014 3E-08 56.0 0.1 60 7-79 70-132 (418)
53 KOG2739 Leucine-rich acidic nu 96.0 0.0037 8.1E-08 52.3 1.8 83 4-97 61-150 (260)
54 KOG0531 Protein phosphatase 1, 95.9 0.0017 3.7E-08 59.7 -0.6 79 4-98 114-194 (414)
55 PF00560 LRR_1: Leucine Rich R 95.8 0.0031 6.7E-08 31.7 0.4 18 9-27 1-18 (22)
56 KOG1947 Leucine rich repeat pr 95.7 0.00063 1.4E-08 63.5 -4.4 67 7-79 187-254 (482)
57 KOG2123 Uncharacterized conser 95.6 0.0012 2.5E-08 55.9 -2.5 60 7-79 40-99 (388)
58 PRK15386 type III secretion pr 95.4 0.028 6.1E-07 51.0 5.2 38 202-243 73-110 (426)
59 KOG3864 Uncharacterized conser 95.4 0.002 4.3E-08 51.9 -1.8 70 198-275 122-192 (221)
60 KOG1644 U2-associated snRNP A' 95.2 0.026 5.7E-07 45.7 4.1 37 62-98 58-96 (233)
61 KOG2123 Uncharacterized conser 94.7 0.00095 2.1E-08 56.4 -5.6 78 6-99 17-97 (388)
62 PF00560 LRR_1: Leucine Rich R 94.6 0.028 6E-07 28.2 1.8 15 34-49 1-15 (22)
63 KOG3864 Uncharacterized conser 94.6 0.0021 4.5E-08 51.8 -3.8 86 202-296 102-187 (221)
64 KOG1859 Leucine-rich repeat pr 94.6 0.0029 6.2E-08 60.3 -3.4 39 5-46 184-222 (1096)
65 smart00370 LRR Leucine-rich re 94.2 0.046 9.9E-07 28.5 2.1 22 7-29 1-22 (26)
66 smart00369 LRR_TYP Leucine-ric 94.2 0.046 9.9E-07 28.5 2.1 22 7-29 1-22 (26)
67 PRK15386 type III secretion pr 94.1 0.04 8.6E-07 50.0 2.9 80 199-302 50-131 (426)
68 KOG4579 Leucine-rich repeat (L 93.6 0.0061 1.3E-07 46.3 -2.7 67 7-87 76-142 (177)
69 PF13504 LRR_7: Leucine rich r 93.3 0.059 1.3E-06 25.1 1.4 16 9-25 2-17 (17)
70 KOG1859 Leucine-rich repeat pr 92.7 0.013 2.9E-07 56.0 -2.5 75 9-98 165-240 (1096)
71 KOG2739 Leucine-rich acidic nu 92.3 0.051 1.1E-06 45.6 0.6 62 7-82 42-105 (260)
72 COG5238 RNA1 Ran GTPase-activa 89.9 0.19 4.2E-06 42.8 1.8 74 4-85 54-137 (388)
73 KOG1947 Leucine rich repeat pr 88.0 0.15 3.2E-06 47.5 -0.1 39 200-239 242-281 (482)
74 smart00367 LRR_CC Leucine-rich 87.4 0.35 7.6E-06 25.2 1.2 16 284-299 1-16 (26)
75 KOG1909 Ran GTPase-activating 84.3 0.46 9.9E-06 41.8 1.0 70 4-81 209-283 (382)
76 PF13306 LRR_5: Leucine rich r 79.3 4.7 0.0001 29.8 5.0 80 3-97 7-88 (129)
77 PF13516 LRR_6: Leucine Rich r 77.1 1.5 3.2E-05 22.1 1.1 15 32-46 1-15 (24)
78 PF13306 LRR_5: Leucine rich r 75.0 7.7 0.00017 28.6 5.1 80 3-97 30-110 (129)
79 smart00365 LRR_SD22 Leucine-ri 74.9 2.8 6E-05 21.9 1.7 17 32-49 1-17 (26)
80 smart00364 LRR_BAC Leucine-ric 68.7 3.5 7.5E-05 21.6 1.2 17 9-26 3-19 (26)
81 KOG0473 Leucine-rich repeat pr 57.5 0.36 7.7E-06 40.3 -5.6 81 4-98 38-119 (326)
82 smart00368 LRR_RI Leucine rich 56.5 9.9 0.00021 20.0 1.7 14 8-22 2-15 (28)
83 COG5238 RNA1 Ran GTPase-activa 49.9 11 0.00023 32.6 1.7 94 6-101 28-131 (388)
84 TIGR00864 PCC polycystin catio 25.2 49 0.0011 37.8 2.3 31 14-45 1-31 (2740)
85 KOG0473 Leucine-rich repeat pr 24.8 3.8 8.2E-05 34.4 -4.6 62 4-79 61-122 (326)
86 KOG3763 mRNA export factor TAP 23.6 28 0.00061 33.0 0.2 87 198-291 215-307 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.65 E-value=7.1e-16 Score=155.76 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=37.7
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc-c
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS-I 82 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~-~ 82 (311)
++++++|++|++++|.....+|..+ +++++|++|++++|.+.+.+ | ..++.+++|+.|++++|... .
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~--p---------~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQI--P---------RELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcC--C---------hHHcCcCCccEEECcCCccCCc
Confidence 4444555555555432222444443 45555555555554444333 3 44445555555555444422 3
Q ss_pred cccccc-cccCcEEEEE
Q 039375 83 LQEGFL-ARKLERFKIS 98 (311)
Q Consensus 83 lp~~~~-l~~L~~l~~~ 98 (311)
+|..+. +++|+.+++.
T Consensus 228 ~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CChhHhcCCCCCEEECc
Confidence 444432 4455555443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.65 E-value=1.3e-15 Score=155.22 Aligned_cols=103 Identities=22% Similarity=0.254 Sum_probs=75.7
Q ss_pred CCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccC------------Cccccccccccccc
Q 039375 194 PSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVIND------------KEGVDIEEIVFSKL 261 (311)
Q Consensus 194 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~------------~~~~~~~~~~~~~L 261 (311)
|.++..+++|+.|++++|.+++.+ + ... .+++|+.|++++|..+..+.... -...|.....+++|
T Consensus 795 P~si~~L~~L~~L~Ls~C~~L~~L-P-~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L 871 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCINLETL-P-TGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNL 871 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCCcCee-C-CCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCC
Confidence 445667888999999998777773 2 222 68888999999887765443211 01123445678899
Q ss_pred ceeecccccccceeccCCceecCCCccEEEEecCCCCeec
Q 039375 262 KALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMKTF 301 (311)
Q Consensus 262 ~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~ 301 (311)
+.|.+.+|++++.+.. ....+++|+.+.+.+|++|+..
T Consensus 872 ~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 872 SFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CEEECCCCCCcCccCc--ccccccCCCeeecCCCcccccc
Confidence 9999999999999844 5567899999999999999844
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.64 E-value=8.6e-16 Score=155.17 Aligned_cols=86 Identities=19% Similarity=0.228 Sum_probs=67.0
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
|..++++++|++|++++|.....+|.++ +++.+|++|++++|.+.+.+ | .+++.+++|++|+++.|..
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~--p---------~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEI--P---------YEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcC--C---------hhHhcCCCCCEEECcCcee
Confidence 4567889999999999865445778776 89999999999998887666 6 7788888888888887764
Q ss_pred -cccccccc-cccCcEEEEE
Q 039375 81 -SILQEGFL-ARKLERFKIS 98 (311)
Q Consensus 81 -~~lp~~~~-l~~L~~l~~~ 98 (311)
+.+|..+. +++|+.+.++
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred ccccChhHhCCCCCCEEECc
Confidence 35666664 7778877775
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.56 E-value=4.2e-14 Score=144.28 Aligned_cols=94 Identities=21% Similarity=0.372 Sum_probs=70.2
Q ss_pred cccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceecc-
Q 039375 199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCS- 277 (311)
Q Consensus 199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~- 277 (311)
.+++|+.|++++|..+.. .+..++++++|+.|+|++|..++.++. . ..+++|++|.+++|..++.+..
T Consensus 776 ~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~LP~--------~-~~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETLPT--------G-INLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred ccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCeeCC--------C-CCccccCEEECCCCCcccccccc
Confidence 356899999999966665 356788999999999999998887732 1 2477888888888866654421
Q ss_pred -----------------CCceecCCCccEEEEecCCCCeecCC
Q 039375 278 -----------------ANYTFKFPSLEYLEVIGCPKMKTFTS 303 (311)
Q Consensus 278 -----------------~~~~~~~~~L~~L~i~~c~~l~~~~~ 303 (311)
+.....+++|++|++.+|++|+.++.
T Consensus 845 ~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 845 STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 01234578999999999999997654
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.45 E-value=2.5e-14 Score=129.14 Aligned_cols=235 Identities=17% Similarity=0.144 Sum_probs=153.8
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
.|..|.+|..|.|+. |.++.+|..++++|++|+.|++..|.|. .++| ..+..|++|+.|.+..|++..
T Consensus 192 ~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~----------ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIR-IVEG----------LTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred cccccchheeeeccc-CcccccCHHHhhhcchhhhhhcccccee-eehh----------hhhcCchhhhhhhhhhcCccc
Confidence 355677788888888 7888888877788888888888888886 6654 566778888888888888888
Q ss_pred cccccc--cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc-eeeEEccccCCcceecccccc
Q 039375 83 LQEGFL--ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD-FTDICSMKLQAINNVEYISQS 159 (311)
Q Consensus 83 lp~~~~--l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-l~~L~l~~~~~~~~~~~~~~~ 159 (311)
+.++++ +.+++++++..+...-.. .+| - -+++.++.|+++.+ ++.+..+. + +
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn-----~g~-----l----fgLt~L~~L~lS~NaI~rih~d~--------W---s 314 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVN-----EGW-----L----FGLTSLEQLDLSYNAIQRIHIDS--------W---S 314 (873)
T ss_pred ccCcceeeecccceeecccchhhhhh-----ccc-----c----cccchhhhhccchhhhheeecch--------h---h
Confidence 888774 788888877643211110 022 2 45566666665543 34433321 1 3
Q ss_pred cccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCc
Q 039375 160 RITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCR 238 (311)
Q Consensus 160 ~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~ 238 (311)
..+.|+.|+++. .+...+ +..+..+..|+.|.++.+ +++. .....+..+.+|+.|+++++.
T Consensus 315 ftqkL~~LdLs~N~i~~l~----------------~~sf~~L~~Le~LnLs~N-si~~-l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLD----------------EGSFRVLSQLEELNLSHN-SIDH-LAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred hcccceeEeccccccccCC----------------hhHHHHHHHhhhhccccc-chHH-HHhhHHHHhhhhhhhcCcCCe
Confidence 345677777765 111111 112445778888888888 7777 344567778899999998776
Q ss_pred CceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCCCCe
Q 039375 239 AMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMK 299 (311)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~ 299 (311)
...-|.. .......++.|+.|.+.+. +++++... .+.+++.||+|++.+.+-..
T Consensus 377 ls~~IED-----aa~~f~gl~~LrkL~l~gN-qlk~I~kr-Afsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 377 LSWCIED-----AAVAFNGLPSLRKLRLTGN-QLKSIPKR-AFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred EEEEEec-----chhhhccchhhhheeecCc-eeeecchh-hhccCcccceecCCCCccee
Confidence 5444422 1222345888888888875 47777533 45678888888888766544
No 6
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.35 E-value=6e-13 Score=130.42 Aligned_cols=259 Identities=21% Similarity=0.267 Sum_probs=152.8
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc-cc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND-SI 82 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~-~~ 82 (311)
|..++.|++|||++|..+.++|.+| ++|.+||+|+++++.+. .+ | .++++|+.|.+|++..++. ..
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~-~L--P---------~~l~~Lk~L~~Lnl~~~~~l~~ 633 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGIS-HL--P---------SGLGNLKKLIYLNLEVTGRLES 633 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCcc-cc--c---------hHHHHHHhhheecccccccccc
Confidence 5679999999999999999999998 99999999999999998 88 8 9999999999999987763 44
Q ss_pred cccccc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc-----------------eeeEEc
Q 039375 83 LQEGFL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD-----------------FTDICS 144 (311)
Q Consensus 83 lp~~~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------------l~~L~l 144 (311)
+|.... +++|+++.+........... ..++ .++.+|+.+.+... .+.+.+
T Consensus 634 ~~~i~~~L~~Lr~L~l~~s~~~~~~~~--l~el----------~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 634 IPGILLELQSLRVLRLPRSALSNDKLL--LKEL----------ENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred ccchhhhcccccEEEeeccccccchhh--HHhh----------hcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhh
Confidence 444444 89999998874331100000 0001 11122222111110 111111
Q ss_pred cccCCcceecccccccccccceEEEec-eEecccccccCcccccccEEeCCCCcc-cccCccEEEEecCCCceeecCccc
Q 039375 145 MKLQAINNVEYISQSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSV-SFRNLTKLVAVGCKELIHLVTSST 222 (311)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~-~l~~L~~L~l~~~~~l~~l~~~~~ 222 (311)
..+...+.. .. ...+.+|+.|.+.+ .+.+... . +....... .|+++..+.+.+|...+++. +
T Consensus 702 ~~~~~~~~~-~~-~~~l~~L~~L~i~~~~~~e~~~--~---------~~~~~~~~~~f~~l~~~~~~~~~~~r~l~---~ 765 (889)
T KOG4658|consen 702 EGCSKRTLI-SS-LGSLGNLEELSILDCGISEIVI--E---------WEESLIVLLCFPNLSKVSILNCHMLRDLT---W 765 (889)
T ss_pred cccccceee-cc-cccccCcceEEEEcCCCchhhc--c---------cccccchhhhHHHHHHHHhhccccccccc---h
Confidence 111101000 00 04566677777655 1110000 0 00000011 25566666667776666532 3
Q ss_pred cccCCCCCEEeeccCcCceEEeccCCccc--cccccccccccee-ecccccccceeccCCceecCCCccEEEEecCCCCe
Q 039375 223 AKTLVRLVTVQVYGCRAMTEVVINDKEGV--DIEEIVFSKLKAL-ILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMK 299 (311)
Q Consensus 223 l~~l~~L~~L~l~~c~~l~~~~~~~~~~~--~~~~~~~~~L~~L-~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~ 299 (311)
..-.++|+.|.+.+|..+++++....... ......|..+..+ .+.+.+.++++.+ ....+++|+.+.+..||++.
T Consensus 766 ~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~--~~l~~~~l~~~~ve~~p~l~ 843 (889)
T KOG4658|consen 766 LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYW--LPLSFLKLEELIVEECPKLG 843 (889)
T ss_pred hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEe--cccCccchhheehhcCcccc
Confidence 34456888888888887777766332211 1113456666666 5777777777755 44566678888888888888
Q ss_pred ecCCCC
Q 039375 300 TFTSGE 305 (311)
Q Consensus 300 ~~~~~~ 305 (311)
.+|...
T Consensus 844 ~~P~~~ 849 (889)
T KOG4658|consen 844 KLPLLS 849 (889)
T ss_pred cCcccc
Confidence 777553
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.28 E-value=3.7e-13 Score=121.70 Aligned_cols=91 Identities=16% Similarity=0.178 Sum_probs=60.2
Q ss_pred cccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccc---ccee
Q 039375 199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDS---LTSF 275 (311)
Q Consensus 199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~---l~~~ 275 (311)
..++|+.|+++.+ +++. ..++.+..+..|+.|+++++. +..+..+ ....+.+|+.|++++..- +++-
T Consensus 315 ftqkL~~LdLs~N-~i~~-l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~-------af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 315 FTQKLKELDLSSN-RITR-LDEGSFRVLSQLEELNLSHNS-IDHLAEG-------AFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred hcccceeEecccc-cccc-CChhHHHHHHHhhhhcccccc-hHHHHhh-------HHHHhhhhhhhcCcCCeEEEEEecc
Confidence 3568999999999 8888 667788889999999998764 3333111 123467777777776421 1221
Q ss_pred ccCCceecCCCccEEEEecCCCCeecC
Q 039375 276 CSANYTFKFPSLEYLEVIGCPKMKTFT 302 (311)
Q Consensus 276 ~~~~~~~~~~~L~~L~i~~c~~l~~~~ 302 (311)
...+.++++|..|.+.+ .++|.++
T Consensus 385 --a~~f~gl~~LrkL~l~g-Nqlk~I~ 408 (873)
T KOG4194|consen 385 --AVAFNGLPSLRKLRLTG-NQLKSIP 408 (873)
T ss_pred --hhhhccchhhhheeecC-ceeeecc
Confidence 12334689999998877 4555544
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.21 E-value=5.3e-13 Score=121.73 Aligned_cols=85 Identities=20% Similarity=0.261 Sum_probs=53.0
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
|..|..|.-|.+|||+. +.++++|.++ ..-+++-+|++++|.|. .+ |+ .-+-+|..|-.|++++|..
T Consensus 96 P~diF~l~dLt~lDLSh-NqL~EvP~~L-E~AKn~iVLNLS~N~Ie-tI--Pn--------~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSH-NQLREVPTNL-EYAKNSIVLNLSYNNIE-TI--PN--------SLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred Cchhcccccceeeecch-hhhhhcchhh-hhhcCcEEEEcccCccc-cC--Cc--------hHHHhhHhHhhhccccchh
Confidence 45566666666677766 6666666665 66666666777766665 55 30 1123455666666666666
Q ss_pred cccccccc-cccCcEEEEE
Q 039375 81 SILQEGFL-ARKLERFKIS 98 (311)
Q Consensus 81 ~~lp~~~~-l~~L~~l~~~ 98 (311)
..+|..+. +.+|+.+.++
T Consensus 163 e~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 163 EMLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred hhcCHHHHHHhhhhhhhcC
Confidence 66666664 6666666665
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.12 E-value=3.8e-12 Score=116.28 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=46.9
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN 79 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~ 79 (311)
|..+..-+++-+|+|++ +.|..||..++-+|.-|-+|++++|.+. .+ | .++..|.+|++|.+++|.
T Consensus 119 P~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe-~L--P---------PQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 119 PTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLE-ML--P---------PQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred chhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccchhh-hc--C---------HHHHHHhhhhhhhcCCCh
Confidence 44555666777777777 7777777777777777777777777765 55 6 667777777777776655
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.02 E-value=2.8e-12 Score=111.35 Aligned_cols=89 Identities=20% Similarity=0.087 Sum_probs=59.9
Q ss_pred CCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccc
Q 039375 194 PSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLT 273 (311)
Q Consensus 194 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~ 273 (311)
|..++.+..|+.|+++.+ ++..+ |..+-.+..++.+-.+ ++.++.+.. .+...|.+|..|++.+. .+.
T Consensus 451 P~e~~~lv~Lq~LnlS~N-rFr~l--P~~~y~lq~lEtllas-~nqi~~vd~-------~~l~nm~nL~tLDL~nN-dlq 518 (565)
T KOG0472|consen 451 PEEMGSLVRLQTLNLSFN-RFRML--PECLYELQTLETLLAS-NNQIGSVDP-------SGLKNMRNLTTLDLQNN-DLQ 518 (565)
T ss_pred chhhhhhhhhheeccccc-ccccc--hHHHhhHHHHHHHHhc-cccccccCh-------HHhhhhhhcceeccCCC-chh
Confidence 666777888999999998 77763 4555445555555444 344444421 22456777888887764 577
Q ss_pred eeccCCceecCCCccEEEEecCC
Q 039375 274 SFCSANYTFKFPSLEYLEVIGCP 296 (311)
Q Consensus 274 ~~~~~~~~~~~~~L~~L~i~~c~ 296 (311)
.+++ ..+.|.+|++|.+.+.|
T Consensus 519 ~IPp--~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 519 QIPP--ILGNMTNLRHLELDGNP 539 (565)
T ss_pred hCCh--hhccccceeEEEecCCc
Confidence 7744 67889999999988864
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.01 E-value=8e-12 Score=96.78 Aligned_cols=81 Identities=30% Similarity=0.449 Sum_probs=73.3
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL 83 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l 83 (311)
+.++.+++.|-|+. ++++.+|++| ..|.+||.|++..|.+. ++ | .++..++.|+.|++..|....+
T Consensus 29 Lf~~s~ITrLtLSH-NKl~~vppni-a~l~nlevln~~nnqie-~l--p---------~~issl~klr~lnvgmnrl~~l 94 (264)
T KOG0617|consen 29 LFNMSNITRLTLSH-NKLTVVPPNI-AELKNLEVLNLSNNQIE-EL--P---------TSISSLPKLRILNVGMNRLNIL 94 (264)
T ss_pred ccchhhhhhhhccc-CceeecCCcH-HHhhhhhhhhcccchhh-hc--C---------hhhhhchhhhheecchhhhhcC
Confidence 45677888899999 8999999998 99999999999999998 88 8 9999999999999999999999
Q ss_pred ccccc-cccCcEEEEE
Q 039375 84 QEGFL-ARKLERFKIS 98 (311)
Q Consensus 84 p~~~~-l~~L~~l~~~ 98 (311)
|++++ ++.|+.+++.
T Consensus 95 prgfgs~p~levldlt 110 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLT 110 (264)
T ss_pred ccccCCCchhhhhhcc
Confidence 99997 8888888775
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.89 E-value=4.8e-11 Score=113.31 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=47.6
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF 87 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~ 87 (311)
.+|++++++. +.+..+|+.+ +.+.+|+.+...+|.+. .+ | .++...++|+.|.+..|..+.+|...
T Consensus 241 ~nl~~~dis~-n~l~~lp~wi-~~~~nle~l~~n~N~l~-~l--p---------~ri~~~~~L~~l~~~~nel~yip~~l 306 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLSNLPEWI-GACANLEALNANHNRLV-AL--P---------LRISRITSLVSLSAAYNELEYIPPFL 306 (1081)
T ss_pred ccceeeecch-hhhhcchHHH-HhcccceEecccchhHH-hh--H---------HHHhhhhhHHHHHhhhhhhhhCCCcc
Confidence 4678888888 7778888554 88888888888887764 44 4 45545555555555555554444444
Q ss_pred c-cccCcEEEEE
Q 039375 88 L-ARKLERFKIS 98 (311)
Q Consensus 88 ~-l~~L~~l~~~ 98 (311)
. ++.|+.+++.
T Consensus 307 e~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQ 318 (1081)
T ss_pred cccceeeeeeeh
Confidence 3 4444444443
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.87 E-value=1.3e-08 Score=98.52 Aligned_cols=75 Identities=24% Similarity=0.277 Sum_probs=46.7
Q ss_pred cCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCc
Q 039375 201 RNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANY 280 (311)
Q Consensus 201 ~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~ 280 (311)
.+|+.|++++| +++.+ + . ..++|+.|++++|. +..+. ..+..|+.|.+.++ .++.++ ..
T Consensus 382 ~~L~~LdLs~N-~Lt~L-P-~---l~s~L~~LdLS~N~-LssIP-----------~l~~~L~~L~Ls~N-qLt~LP--~s 440 (788)
T PRK15387 382 SGLKELIVSGN-RLTSL-P-V---LPSELKELMVSGNR-LTSLP-----------MLPSGLLSLSVYRN-QLTRLP--ES 440 (788)
T ss_pred cccceEEecCC-cccCC-C-C---cccCCCEEEccCCc-CCCCC-----------cchhhhhhhhhccC-cccccC--hH
Confidence 46788888887 66652 2 1 13578888888765 33331 12345677777764 366663 24
Q ss_pred eecCCCccEEEEecCC
Q 039375 281 TFKFPSLEYLEVIGCP 296 (311)
Q Consensus 281 ~~~~~~L~~L~i~~c~ 296 (311)
...+++|+.|++.+++
T Consensus 441 l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 441 LIHLSSETTVNLEGNP 456 (788)
T ss_pred HhhccCCCeEECCCCC
Confidence 5567788888887763
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.85 E-value=3.1e-11 Score=105.00 Aligned_cols=83 Identities=25% Similarity=0.371 Sum_probs=55.7
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
|.+++.+.+++.|+++. +++.++|+++ +.+.+|..|+.++|... ++ | ++++.+..|..++..+|.+
T Consensus 84 p~aig~l~~l~~l~vs~-n~ls~lp~~i-~s~~~l~~l~~s~n~~~-el--~---------~~i~~~~~l~dl~~~~N~i 149 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSH-NKLSELPEQI-GSLISLVKLDCSSNELK-EL--P---------DSIGRLLDLEDLDATNNQI 149 (565)
T ss_pred CHHHHHHHHHHHhhccc-chHhhccHHH-hhhhhhhhhhcccccee-ec--C---------chHHHHhhhhhhhcccccc
Confidence 45667777777777777 6777777776 77777777777777765 55 5 6666666666666666666
Q ss_pred cccccccc-cccCcEEEE
Q 039375 81 SILQEGFL-ARKLERFKI 97 (311)
Q Consensus 81 ~~lp~~~~-l~~L~~l~~ 97 (311)
..+|..+. +.+|..+.+
T Consensus 150 ~slp~~~~~~~~l~~l~~ 167 (565)
T KOG0472|consen 150 SSLPEDMVNLSKLSKLDL 167 (565)
T ss_pred ccCchHHHHHHHHHHhhc
Confidence 66666553 444444433
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.77 E-value=6.1e-09 Score=102.60 Aligned_cols=259 Identities=19% Similarity=0.224 Sum_probs=132.5
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
|.+|++|.|||||++++ +.++++|.++ ++|.+|++|++..+.....+ | .-...|++|++|.+.....
T Consensus 588 P~~I~~Li~LryL~L~~-t~I~~LP~~l-~~Lk~L~~Lnl~~~~~l~~~--~---------~i~~~L~~Lr~L~l~~s~~ 654 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSD-TGISHLPSGL-GNLKKLIYLNLEVTGRLESI--P---------GILLELQSLRVLRLPRSAL 654 (889)
T ss_pred ChHHhhhhhhhcccccC-CCccccchHH-HHHHhhheeccccccccccc--c---------chhhhcccccEEEeecccc
Confidence 77899999999999999 8999999998 99999999999988755233 3 4444589999999965431
Q ss_pred ---cccccc-cccccCcEEEEEecCcccccccccccccccccccccc-c--ccccccccccccCceeeEEccccCCccee
Q 039375 81 ---SILQEG-FLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLI-N--HNHERLRELKLKPDFTDICSMKLQAINNV 153 (311)
Q Consensus 81 ---~~lp~~-~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~--~~~~~l~~l~l~~~l~~L~l~~~~~~~~~ 153 (311)
...-.. ..+..|+.+.+..........+-....+.+ ...+.. . ...+..-.+.-..+++.|.+..|......
T Consensus 655 ~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~-~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 655 SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRS-LLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHH-HhHhhhhcccccceeecccccccCcceEEEEcCCCchhh
Confidence 111111 125555555554332200110000000000 000000 0 00000001111112566666666544222
Q ss_pred ccc-cc---cc-ccccceEEEeceEecccccccCcccccccEEeC---CCCcccccCccEEEEecCCCceeecCcccccc
Q 039375 154 EYI-SQ---SR-ITLTVSLFIRRGIFNGRMLRETFEEVGNDKILL---PSSSVSFRNLTKLVAVGCKELIHLVTSSTAKT 225 (311)
Q Consensus 154 ~~~-~~---~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~---~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~ 225 (311)
... .. .. ++++.++.+.+ |.+ +.|....++|+.|.+..|..+++ +....+.
T Consensus 734 ~~~~~~~~~~~~f~~l~~~~~~~-------------------~~~~r~l~~~~f~~~L~~l~l~~~~~~e~--~i~~~k~ 792 (889)
T KOG4658|consen 734 IEWEESLIVLLCFPNLSKVSILN-------------------CHMLRDLTWLLFAPHLTSLSLVSCRLLED--IIPKLKA 792 (889)
T ss_pred cccccccchhhhHHHHHHHHhhc-------------------cccccccchhhccCcccEEEEeccccccc--CCCHHHH
Confidence 100 00 00 11222222111 222 34455678999999999966665 3444555
Q ss_pred CCCCCEEeeccCcCceEE-eccCCcc---cccccccccccceeecccccccceeccCCceecCCCccEEEEecC-CCCee
Q 039375 226 LVRLVTVQVYGCRAMTEV-VINDKEG---VDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC-PKMKT 300 (311)
Q Consensus 226 l~~L~~L~l~~c~~l~~~-~~~~~~~---~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c-~~l~~ 300 (311)
+..++.+.+..+. .... +.....+ .......+++|..+.+..||+++ .+|.+..+.+.+| ++++.
T Consensus 793 ~~~l~~~i~~f~~-~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~---------~~P~~~~~~i~~~~~~~~~ 862 (889)
T KOG4658|consen 793 LLELKELILPFNK-LEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLG---------KLPLLSTLTIVGCEEKLKE 862 (889)
T ss_pred hhhcccEEecccc-cccceeeecCCCCceeEecccCccchhheehhcCcccc---------cCccccccceeccccceee
Confidence 6666654444222 2111 1111100 00011234445555555555443 4678888888887 77777
Q ss_pred cCCC
Q 039375 301 FTSG 304 (311)
Q Consensus 301 ~~~~ 304 (311)
+|.+
T Consensus 863 ~~~~ 866 (889)
T KOG4658|consen 863 YPDG 866 (889)
T ss_pred cCCc
Confidence 7765
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.62 E-value=3.6e-09 Score=100.83 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=64.1
Q ss_pred CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375 7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG 86 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~ 86 (311)
-.+|+.|++++ +.+...|..+ ..+.+|+.|+++.|.|. .+ | .++..+.+|+++.+.+|....+|..
T Consensus 44 ~v~L~~l~lsn-n~~~~fp~~i-t~l~~L~~ln~s~n~i~-~v--p---------~s~~~~~~l~~lnL~~n~l~~lP~~ 109 (1081)
T KOG0618|consen 44 RVKLKSLDLSN-NQISSFPIQI-TLLSHLRQLNLSRNYIR-SV--P---------SSCSNMRNLQYLNLKNNRLQSLPAS 109 (1081)
T ss_pred eeeeEEeeccc-cccccCCchh-hhHHHHhhcccchhhHh-hC--c---------hhhhhhhcchhheeccchhhcCchh
Confidence 44588888888 7888888887 88888888888888886 66 6 7778888888888888888888877
Q ss_pred cc-cccCcEEEEEec
Q 039375 87 FL-ARKLERFKISIG 100 (311)
Q Consensus 87 ~~-l~~L~~l~~~~~ 100 (311)
+. +++|++++++.+
T Consensus 110 ~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 110 ISELKNLQYLDLSFN 124 (1081)
T ss_pred HHhhhcccccccchh
Confidence 74 788888887643
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.62 E-value=6.9e-08 Score=93.83 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=43.3
Q ss_pred CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccc
Q 039375 9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFL 88 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~ 88 (311)
+|+.|++++ +.++.+|..+ . .+|++|++++|.+. .+ | ..+. .+|+.|++++|.+..+|..+.
T Consensus 200 ~L~~L~Ls~-N~LtsLP~~l-~--~nL~~L~Ls~N~Lt-sL--P---------~~l~--~~L~~L~Ls~N~L~~LP~~l~ 261 (754)
T PRK15370 200 QITTLILDN-NELKSLPENL-Q--GNIKTLYANSNQLT-SI--P---------ATLP--DTIQEMELSINRITELPERLP 261 (754)
T ss_pred CCcEEEecC-CCCCcCChhh-c--cCCCEEECCCCccc-cC--C---------hhhh--ccccEEECcCCccCcCChhHh
Confidence 567777777 5667777654 2 36777777777665 45 4 2222 356667776666666665543
Q ss_pred cccCcEEEEE
Q 039375 89 ARKLERFKIS 98 (311)
Q Consensus 89 l~~L~~l~~~ 98 (311)
.+|+.++++
T Consensus 262 -s~L~~L~Ls 270 (754)
T PRK15370 262 -SALQSLDLF 270 (754)
T ss_pred -CCCCEEECc
Confidence 456666654
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.62 E-value=3.2e-07 Score=89.08 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=50.6
Q ss_pred CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccc
Q 039375 9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFL 88 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~ 88 (311)
.-..|++++ +.++.+|+.+ .. +|+.|++.+|.++ .+ | . ..++|++|++++|.+..+|..
T Consensus 202 ~~~~LdLs~-~~LtsLP~~l-~~--~L~~L~L~~N~Lt-~L--P---------~---lp~~Lk~LdLs~N~LtsLP~l-- 260 (788)
T PRK15387 202 GNAVLNVGE-SGLTTLPDCL-PA--HITTLVIPDNNLT-SL--P---------A---LPPELRTLEVSGNQLTSLPVL-- 260 (788)
T ss_pred CCcEEEcCC-CCCCcCCcch-hc--CCCEEEccCCcCC-CC--C---------C---CCCCCcEEEecCCccCcccCc--
Confidence 356788888 5888888876 43 7888888888876 55 4 2 246888888888888888754
Q ss_pred cccCcEEEEE
Q 039375 89 ARKLERFKIS 98 (311)
Q Consensus 89 l~~L~~l~~~ 98 (311)
.++|+.+++.
T Consensus 261 p~sL~~L~Ls 270 (788)
T PRK15387 261 PPGLLELSIF 270 (788)
T ss_pred ccccceeecc
Confidence 3577777665
No 19
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.59 E-value=6.1e-08 Score=63.55 Aligned_cols=60 Identities=32% Similarity=0.447 Sum_probs=52.9
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN 79 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~ 79 (311)
++|++|++++ +.++.+|++.+..+++|++|++++|.+. .++ | ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~-~---------~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN-NKLTEIPPDSFSNLPNLETLDLSNNNLT-SIP-P---------DAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS-STESEECTTTTTTGTTESEEEETSSSES-EEE-T---------TTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCC-CCCCccCHHHHcCCCCCCEeEccCCccC-ccC-H---------HHHcCCCCCCEEeCcCCc
Confidence 5799999999 6999999877799999999999999997 664 4 678999999999998765
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.58 E-value=3e-08 Score=79.14 Aligned_cols=79 Identities=29% Similarity=0.402 Sum_probs=26.4
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHH-hccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVIS-SLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~-~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
+.+..+++.|+|++ +.|+.+.. + + .+.+|+.|++++|.+. .+ +.+..+++|+.|++++|.+..
T Consensus 15 ~~n~~~~~~L~L~~-n~I~~Ie~-L-~~~l~~L~~L~Ls~N~I~-~l------------~~l~~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 15 YNNPVKLRELNLRG-NQISTIEN-L-GATLDKLEVLDLSNNQIT-KL------------EGLPGLPRLKTLDLSNNRISS 78 (175)
T ss_dssp ----------------------S----TT-TT--EEE-TTS--S---------------TT----TT--EEE--SS---S
T ss_pred cccccccccccccc-cccccccc-h-hhhhcCCCEEECCCCCCc-cc------------cCccChhhhhhcccCCCCCCc
Confidence 34556789999999 78888754 4 6 6889999999999997 66 677789999999999999999
Q ss_pred ccccc--ccccCcEEEEE
Q 039375 83 LQEGF--LARKLERFKIS 98 (311)
Q Consensus 83 lp~~~--~l~~L~~l~~~ 98 (311)
++..+ .+++|+.+.+.
T Consensus 79 i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -CHHHHHH-TT--EEE-T
T ss_pred cccchHHhCCcCCEEECc
Confidence 87655 27899999875
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.55 E-value=1.1e-08 Score=79.54 Aligned_cols=84 Identities=20% Similarity=0.387 Sum_probs=71.1
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC-
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN- 79 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~- 79 (311)
|+.|..|++|++|++++ +.|+++|.++ +.|++|+.|+++-|.+. .+ | .++|.++-|+.||++.|.
T Consensus 49 ppnia~l~nlevln~~n-nqie~lp~~i-ssl~klr~lnvgmnrl~-~l--p---------rgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNLSN-NQIEELPTSI-SSLPKLRILNVGMNRLN-IL--P---------RGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred CCcHHHhhhhhhhhccc-chhhhcChhh-hhchhhhheecchhhhh-cC--c---------cccCCCchhhhhhcccccc
Confidence 66789999999999999 8999999998 99999999999988876 66 8 999999999999998776
Q ss_pred -ccccccccc-cccCcEEEEE
Q 039375 80 -DSILQEGFL-ARKLERFKIS 98 (311)
Q Consensus 80 -~~~lp~~~~-l~~L~~l~~~ 98 (311)
...+|..++ +..|+.+.++
T Consensus 115 ~e~~lpgnff~m~tlralyl~ 135 (264)
T KOG0617|consen 115 NENSLPGNFFYMTTLRALYLG 135 (264)
T ss_pred ccccCCcchhHHHHHHHHHhc
Confidence 356777654 6666666654
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.47 E-value=4.7e-07 Score=88.08 Aligned_cols=222 Identities=13% Similarity=0.092 Sum_probs=131.5
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF 87 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~ 87 (311)
.+...|++++ ..++.+|..+ . .+|+.|++++|.+. .+ | ..+. .+|+.|+++.|.+..+|..+
T Consensus 178 ~~~~~L~L~~-~~LtsLP~~I-p--~~L~~L~Ls~N~Lt-sL--P---------~~l~--~nL~~L~Ls~N~LtsLP~~l 239 (754)
T PRK15370 178 NNKTELRLKI-LGLTTIPACI-P--EQITTLILDNNELK-SL--P---------ENLQ--GNIKTLYANSNQLTSIPATL 239 (754)
T ss_pred cCceEEEeCC-CCcCcCCccc-c--cCCcEEEecCCCCC-cC--C---------hhhc--cCCCEEECCCCccccCChhh
Confidence 4578899999 7889999876 4 48999999999988 67 5 4443 58999999999999898765
Q ss_pred ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccceE
Q 039375 88 LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSL 167 (311)
Q Consensus 88 ~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L 167 (311)
. .+|+.++++.+. ...+|.. + . ..+ +.|.++ +..++.+.. .-.++|+.|
T Consensus 240 ~-~~L~~L~Ls~N~---L~~LP~~--l----------~--s~L---------~~L~Ls-~N~L~~LP~---~l~~sL~~L 288 (754)
T PRK15370 240 P-DTIQEMELSINR---ITELPER--L----------P--SAL---------QSLDLF-HNKISCLPE---NLPEELRYL 288 (754)
T ss_pred h-ccccEEECcCCc---cCcCChh--H----------h--CCC---------CEEECc-CCccCcccc---ccCCCCcEE
Confidence 4 578888876332 1233311 0 0 123 333333 223332210 112367777
Q ss_pred EEec-eEecccccccCcccccccEEeCC----CCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceE
Q 039375 168 FIRR-GIFNGRMLRETFEEVGNDKILLP----SSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTE 242 (311)
Q Consensus 168 ~l~~-~~~~~~~~~~~~~~l~~L~~~~~----~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~ 242 (311)
++++ .+..++. ..+..+..|.+.+. .+...+++|+.|++.+| .++. .+ ..+ .++|+.|++++|. +..
T Consensus 289 ~Ls~N~Lt~LP~--~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt~-LP-~~l--~~sL~~L~Ls~N~-L~~ 360 (754)
T PRK15370 289 SVYDNSIRTLPA--HLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALTS-LP-ASL--PPELQVLDVSKNQ-ITV 360 (754)
T ss_pred ECCCCccccCcc--cchhhHHHHHhcCCccccCCccccccceeccccCC-cccc-CC-hhh--cCcccEEECCCCC-CCc
Confidence 7765 1111111 01112333332220 01112468899999998 7776 33 222 2689999999875 333
Q ss_pred EeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCCCCeecC
Q 039375 243 VVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMKTFT 302 (311)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~ 302 (311)
+.. ...+.|++|.+.+| .+..+.. . ...+|++|+++++ ++..+|
T Consensus 361 LP~----------~lp~~L~~LdLs~N-~Lt~LP~--~--l~~sL~~LdLs~N-~L~~LP 404 (754)
T PRK15370 361 LPE----------TLPPTITTLDVSRN-ALTNLPE--N--LPAALQIMQASRN-NLVRLP 404 (754)
T ss_pred CCh----------hhcCCcCEEECCCC-cCCCCCH--h--HHHHHHHHhhccC-CcccCc
Confidence 311 22367999999987 4666632 1 2247888888885 444444
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.35 E-value=5e-09 Score=91.20 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=62.3
Q ss_pred ccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEee-cCccccccccc
Q 039375 10 LRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDV-KNDSILQEGFL 88 (311)
Q Consensus 10 L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~-~~~~~lp~~~~ 88 (311)
-..++|.. |.|+.||++.++.+++|++|++++|.|. .+. | +.++.|.+|..|.++. |.+..+|+...
T Consensus 69 tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~-p---------~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 69 TVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNIS-FIA-P---------DAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred ceEEEecc-CCcccCChhhccchhhhceecccccchh-hcC-h---------HhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 34578888 8999999999999999999999999998 554 7 8888888888887766 77999998764
Q ss_pred --cccCcEEEE
Q 039375 89 --ARKLERFKI 97 (311)
Q Consensus 89 --l~~L~~l~~ 97 (311)
+..|+.+..
T Consensus 137 ~gL~slqrLll 147 (498)
T KOG4237|consen 137 GGLSSLQRLLL 147 (498)
T ss_pred hhHHHHHHHhc
Confidence 666666644
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.21 E-value=8.4e-08 Score=84.72 Aligned_cols=89 Identities=17% Similarity=0.137 Sum_probs=52.1
Q ss_pred CCCCCccEEecCCCCCCc-----ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC
Q 039375 5 GQVTKLRLLDLRDCFHLK-----VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN 79 (311)
Q Consensus 5 ~~L~~L~~L~L~~c~~l~-----~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~ 79 (311)
..+.+|++|++++| .++ .++..+ ...++|++|+++++.+.+ . + .........++.+++|+.|+++.+.
T Consensus 20 ~~l~~L~~l~l~~~-~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~-~--~--~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 20 PKLLCLQVLRLEGN-TLGEEAAKALASAL-RPQPSLKELCLSLNETGR-I--P--RGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHhhccEEeecCC-CCcHHHHHHHHHHH-hhCCCceEEeccccccCC-c--c--hHHHHHHHHHHhcCceeEEEccCCC
Confidence 34566888888885 442 344443 666778888888876541 1 1 0011111455667888888888776
Q ss_pred cc-ccccccc-ccc---CcEEEEEec
Q 039375 80 DS-ILQEGFL-ARK---LERFKISIG 100 (311)
Q Consensus 80 ~~-~lp~~~~-l~~---L~~l~~~~~ 100 (311)
.. ..+..+. +.+ |+.+++..+
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCC
Confidence 54 2333332 333 888887643
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.21 E-value=3.1e-07 Score=81.12 Aligned_cols=83 Identities=18% Similarity=0.142 Sum_probs=53.5
Q ss_pred cCCCCCccEEecCCCCCCcc-------cChhHHHhccccceEEeccccceeeeeccccccccccccccCCC---CCccEE
Q 039375 4 LGQVTKLRLLDLRDCFHLKV-------IAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLL---PWLTTL 73 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~-------lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L---~~L~~L 73 (311)
+...++|++|+++++ .+.. ++..+ +++++|++|++++|.+.... + ..+..+ ++|+.|
T Consensus 47 l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~--~---------~~~~~l~~~~~L~~L 113 (319)
T cd00116 47 LRPQPSLKELCLSLN-ETGRIPRGLQSLLQGL-TKGCGLQELDLSDNALGPDG--C---------GVLESLLRSSSLQEL 113 (319)
T ss_pred HhhCCCceEEecccc-ccCCcchHHHHHHHHH-HhcCceeEEEccCCCCChhH--H---------HHHHHHhccCcccEE
Confidence 445677999999884 4442 23344 77889999999998875322 2 333333 459999
Q ss_pred EEeecCccc-----cccccc-c-ccCcEEEEEe
Q 039375 74 EIDVKNDSI-----LQEGFL-A-RKLERFKISI 99 (311)
Q Consensus 74 ~l~~~~~~~-----lp~~~~-l-~~L~~l~~~~ 99 (311)
+++.+.... +...+. + ++|+.+++..
T Consensus 114 ~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~ 146 (319)
T cd00116 114 KLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGR 146 (319)
T ss_pred EeeCCccchHHHHHHHHHHHhCCCCceEEEcCC
Confidence 998877542 222222 4 7888888763
No 26
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.20 E-value=2e-06 Score=52.01 Aligned_cols=39 Identities=28% Similarity=0.496 Sum_probs=32.1
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeee
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEV 49 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~ 49 (311)
++|++|++++ +.|+.+|+.+ ++|++|++|++++|++. .+
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l-~~l~~L~~L~l~~N~i~-~i 39 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPEL-SNLPNLETLNLSNNPIS-DI 39 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHG-TTCTTSSEEEETSSCCS-BE
T ss_pred CcceEEEccC-CCCcccCchH-hCCCCCCEEEecCCCCC-CC
Confidence 5789999999 7889998877 99999999999999886 55
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.9e-07 Score=81.37 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=41.7
Q ss_pred CCCCccEEecCCCCCCcccCh-hHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375 6 QVTKLRLLDLRDCFHLKVIAP-NVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ 84 (311)
Q Consensus 6 ~L~~L~~L~L~~c~~l~~lp~-~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp 84 (311)
++++|+...|++ ..+...+. +.+..|++++.|+++.|-+. ... | .++-...|++|+.|+++.|.....-
T Consensus 119 n~kkL~~IsLdn-~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~-~-------v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 119 NLKKLREISLDN-YRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWF-P-------VLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred hHHhhhheeecC-ccccccchhhhhhhCCcceeecchhhhHH-hHH-H-------HHHHHHhcccchhcccccccccCCc
Confidence 456666666666 34444442 33356667777777666542 210 0 0123345666666666665544333
Q ss_pred ccc---ccccCcEEEEE
Q 039375 85 EGF---LARKLERFKIS 98 (311)
Q Consensus 85 ~~~---~l~~L~~l~~~ 98 (311)
+.. .+..|+.+.+.
T Consensus 189 ~s~~~~~l~~lK~L~l~ 205 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLN 205 (505)
T ss_pred cccchhhhhhhheEEec
Confidence 222 14455555444
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.14 E-value=2.5e-07 Score=78.27 Aligned_cols=59 Identities=24% Similarity=0.255 Sum_probs=32.4
Q ss_pred CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
.|..|||++ |.|+.+..++ .=++.++.|++++|.+. .+ .++..|++|+.||+++|....
T Consensus 285 ~LtelDLS~-N~I~~iDESv-KL~Pkir~L~lS~N~i~-~v------------~nLa~L~~L~~LDLS~N~Ls~ 343 (490)
T KOG1259|consen 285 ELTELDLSG-NLITQIDESV-KLAPKLRRLILSQNRIR-TV------------QNLAELPQLQLLDLSGNLLAE 343 (490)
T ss_pred hhhhccccc-cchhhhhhhh-hhccceeEEecccccee-ee------------hhhhhcccceEeecccchhHh
Confidence 445555665 5555555554 44555666666666554 44 445555555666655544433
No 29
>PLN03150 hypothetical protein; Provisional
Probab=98.11 E-value=3.5e-06 Score=81.20 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=39.1
Q ss_pred ccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc-cccccccc
Q 039375 10 LRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND-SILQEGFL 88 (311)
Q Consensus 10 L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~-~~lp~~~~ 88 (311)
++.|+|+++..-..+|.++ ++|++|++|++++|.+.+.+ | ..++.+++|+.|++++|.. +.+|..+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~i--P---------~~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNI--P---------PSLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcC--C---------hHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 4455555522222445554 55555555555555555444 4 4555555555555555553 24444443
Q ss_pred -cccCcEEEEE
Q 039375 89 -ARKLERFKIS 98 (311)
Q Consensus 89 -l~~L~~l~~~ 98 (311)
+++|+.++++
T Consensus 488 ~L~~L~~L~Ls 498 (623)
T PLN03150 488 QLTSLRILNLN 498 (623)
T ss_pred cCCCCCEEECc
Confidence 5555555553
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.07 E-value=3.4e-06 Score=67.42 Aligned_cols=81 Identities=27% Similarity=0.345 Sum_probs=33.8
Q ss_pred ccC-CCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeecccccccccccccc-CCCCCccEEEEeecCc
Q 039375 3 ALG-QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDEL-MLLPWLTTLEIDVKND 80 (311)
Q Consensus 3 ~i~-~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l-~~L~~L~~L~l~~~~~ 80 (311)
.++ .|.+|+.|++++ +.|+.++. +..+++|++|++++|.+. .+ . +.+ ..+++|+.|.+++|.+
T Consensus 36 ~L~~~l~~L~~L~Ls~-N~I~~l~~--l~~L~~L~~L~L~~N~I~-~i--~---------~~l~~~lp~L~~L~L~~N~I 100 (175)
T PF14580_consen 36 NLGATLDKLEVLDLSN-NQITKLEG--LPGLPRLKTLDLSNNRIS-SI--S---------EGLDKNLPNLQELYLSNNKI 100 (175)
T ss_dssp S--TT-TT--EEE-TT-S--S--TT------TT--EEE--SS----S---C---------HHHHHH-TT--EEE-TTS--
T ss_pred chhhhhcCCCEEECCC-CCCccccC--ccChhhhhhcccCCCCCC-cc--c---------cchHHhCCcCCEEECcCCcC
Confidence 344 477899999999 78888875 488999999999999887 55 2 334 3578899999988887
Q ss_pred ccccccc---ccccCcEEEEE
Q 039375 81 SILQEGF---LARKLERFKIS 98 (311)
Q Consensus 81 ~~lp~~~---~l~~L~~l~~~ 98 (311)
..+..-. .+++|+.+.+.
T Consensus 101 ~~l~~l~~L~~l~~L~~L~L~ 121 (175)
T PF14580_consen 101 SDLNELEPLSSLPKLRVLSLE 121 (175)
T ss_dssp -SCCCCGGGGG-TT--EEE-T
T ss_pred CChHHhHHHHcCCCcceeecc
Confidence 6665422 27778877764
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.96 E-value=5.9e-06 Score=75.42 Aligned_cols=176 Identities=22% Similarity=0.257 Sum_probs=108.5
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhcc-ccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLI-RLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~-~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
+..+++++.|++.+ +.+.++|+.. +.+. +|++|++++|.+. .+ | ..++.+++|+.|+++.|.+..
T Consensus 112 ~~~~~~l~~L~l~~-n~i~~i~~~~-~~~~~nL~~L~l~~N~i~-~l--~---------~~~~~l~~L~~L~l~~N~l~~ 177 (394)
T COG4886 112 LLELTNLTSLDLDN-NNITDIPPLI-GLLKSNLKELDLSDNKIE-SL--P---------SPLRNLPNLKNLDLSFNDLSD 177 (394)
T ss_pred hhcccceeEEecCC-cccccCcccc-ccchhhcccccccccchh-hh--h---------hhhhccccccccccCCchhhh
Confidence 34567788899988 8888888876 7774 8999999999887 55 4 678889999999999989888
Q ss_pred ccccc-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccc
Q 039375 83 LQEGF-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRI 161 (311)
Q Consensus 83 lp~~~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~ 161 (311)
+|... .+++|+.+.++.+. +..+|... .....++++.+..+- .+.... .. ..+
T Consensus 178 l~~~~~~~~~L~~L~ls~N~---i~~l~~~~------------~~~~~L~~l~~~~N~---------~~~~~~-~~-~~~ 231 (394)
T COG4886 178 LPKLLSNLSNLNNLDLSGNK---ISDLPPEI------------ELLSALEELDLSNNS---------IIELLS-SL-SNL 231 (394)
T ss_pred hhhhhhhhhhhhheeccCCc---cccCchhh------------hhhhhhhhhhhcCCc---------ceecch-hh-hhc
Confidence 88877 57888888776332 22222111 111223444333320 000000 00 222
Q ss_pred cccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCc
Q 039375 162 TLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAM 240 (311)
Q Consensus 162 ~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l 240 (311)
.++..+.+.+ .+... +.....+++++.|+++++ +++++ . .+..+.+++.|+++++...
T Consensus 232 ~~l~~l~l~~n~~~~~-----------------~~~~~~l~~l~~L~~s~n-~i~~i-~--~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 232 KNLSGLELSNNKLEDL-----------------PESIGNLSNLETLDLSNN-QISSI-S--SLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccccccCCceeeec-----------------cchhccccccceeccccc-ccccc-c--cccccCccCEEeccCcccc
Confidence 3333333222 11100 223455677899999988 77774 2 2778889999999876543
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.84 E-value=3.6e-05 Score=50.23 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=40.3
Q ss_pred cCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccc
Q 039375 201 RNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDL 269 (311)
Q Consensus 201 ~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~ 269 (311)
|+|+.|++++| +++. .+...+..+++|++|++++| .+..+.... ...+++|++|.++++
T Consensus 1 p~L~~L~l~~n-~l~~-i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~-------f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTE-IPPDSFSNLPNLETLDLSNN-NLTSIPPDA-------FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESE-ECTTTTTTGTTESEEEETSS-SESEEETTT-------TTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCc-cCHHHHcCCCCCCEeEccCC-ccCccCHHH-------HcCCCCCCEEeCcCC
Confidence 46788888888 8887 45677788888888888854 445553311 245666777776665
No 33
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=2.9e-05 Score=46.89 Aligned_cols=41 Identities=32% Similarity=0.353 Sum_probs=34.1
Q ss_pred cccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccc
Q 039375 33 IRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQE 85 (311)
Q Consensus 33 ~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~ 85 (311)
++||+|++++|.+. .+ | .+++.|++|+.|++++|.+..++.
T Consensus 1 ~~L~~L~l~~N~i~-~l--~---------~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DL--P---------PELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-S-SH--G---------GHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCc-cc--C---------chHhCCCCCCEEEecCCCCCCCcC
Confidence 47999999999998 77 5 669999999999999999887764
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.65 E-value=3.6e-06 Score=76.98 Aligned_cols=170 Identities=18% Similarity=0.195 Sum_probs=110.1
Q ss_pred CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccc
Q 039375 9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFL 88 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~ 88 (311)
--...|++. +.+..+|.++ ..+..|+.+.+..|.+. .+ | +.+++|..|..|+++.|.+..+|..+.
T Consensus 76 dt~~aDlsr-NR~~elp~~~-~~f~~Le~liLy~n~~r-~i--p---------~~i~~L~~lt~l~ls~NqlS~lp~~lC 141 (722)
T KOG0532|consen 76 DTVFADLSR-NRFSELPEEA-CAFVSLESLILYHNCIR-TI--P---------EAICNLEALTFLDLSSNQLSHLPDGLC 141 (722)
T ss_pred chhhhhccc-cccccCchHH-HHHHHHHHHHHHhccce-ec--c---------hhhhhhhHHHHhhhccchhhcCChhhh
Confidence 334578888 7889999998 99999999999999887 66 7 899999999999999999999999998
Q ss_pred cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccceEE
Q 039375 89 ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLF 168 (311)
Q Consensus 89 l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 168 (311)
.--|+.+.++.++ ...+|..+ +....+..+.. . +..+..+.-.. ..+..|+.|.
T Consensus 142 ~lpLkvli~sNNk---l~~lp~~i------------g~~~tl~~ld~---------s-~nei~slpsql-~~l~slr~l~ 195 (722)
T KOG0532|consen 142 DLPLKVLIVSNNK---LTSLPEEI------------GLLPTLAHLDV---------S-KNEIQSLPSQL-GYLTSLRDLN 195 (722)
T ss_pred cCcceeEEEecCc---cccCCccc------------ccchhHHHhhh---------h-hhhhhhchHHh-hhHHHHHHHH
Confidence 7778888887443 22233222 22222222222 1 11121111000 2233344444
Q ss_pred Eec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375 169 IRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA 239 (311)
Q Consensus 169 l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~ 239 (311)
+.. ++.+. |.....+ .|..|+++.+ ++..+ |..+..|..|++|.+++|+.
T Consensus 196 vrRn~l~~l-----------------p~El~~L-pLi~lDfScN-kis~i--Pv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 196 VRRNHLEDL-----------------PEELCSL-PLIRLDFSCN-KISYL--PVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred HhhhhhhhC-----------------CHHHhCC-ceeeeecccC-ceeec--chhhhhhhhheeeeeccCCC
Confidence 332 12222 1122223 4889999988 88863 56678899999999997764
No 35
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.65 E-value=1.3e-06 Score=77.04 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=59.4
Q ss_pred cccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccC
Q 039375 199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSA 278 (311)
Q Consensus 199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~ 278 (311)
+.+.|+.+++.+|....+........+++.|+++.+++|..+++-... ........+..|..+.+.+||.+++-...
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~---~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR---HLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh---hhhhccccccccceeeecCCCCchHHHHH
Confidence 466788888888754444222334456788888888888766553110 00111134667888888888877654221
Q ss_pred CceecCCCccEEEEecCCCC
Q 039375 279 NYTFKFPSLEYLEVIGCPKM 298 (311)
Q Consensus 279 ~~~~~~~~L~~L~i~~c~~l 298 (311)
....+++||.+++.+|...
T Consensus 421 -~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 421 -HLSICRNLERIELIDCQDV 439 (483)
T ss_pred -HHhhCcccceeeeechhhh
Confidence 2346788999888888443
No 36
>PLN03150 hypothetical protein; Provisional
Probab=97.62 E-value=7.8e-05 Score=71.99 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=68.9
Q ss_pred CCccCCCCCccEEecCCCCCCc-ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC
Q 039375 1 PKALGQVTKLRLLDLRDCFHLK-VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN 79 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~-~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~ 79 (311)
|..+++|++|++|+|++ +.+. .+|..+ +.+++|++|++++|.+.+.+ | +.++.+++|+.|+++.|.
T Consensus 435 p~~i~~L~~L~~L~Ls~-N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~i--P---------~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 435 PNDISKLRHLQSINLSG-NSIRGNIPPSL-GSITSLEVLDLSYNSFNGSI--P---------ESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CHHHhCCCCCCEEECCC-CcccCcCChHH-hCCCCCCEEECCCCCCCCCC--c---------hHHhcCCCCCEEECcCCc
Confidence 45678899999999999 4555 888887 99999999999999998888 7 889999999999999887
Q ss_pred c-cccccccc--cccCcEEEEE
Q 039375 80 D-SILQEGFL--ARKLERFKIS 98 (311)
Q Consensus 80 ~-~~lp~~~~--l~~L~~l~~~ 98 (311)
. +.+|..+. ..++..+.+.
T Consensus 502 l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 502 LSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred ccccCChHHhhccccCceEEec
Confidence 4 57887664 2344445443
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=2e-05 Score=69.99 Aligned_cols=188 Identities=15% Similarity=0.100 Sum_probs=103.1
Q ss_pred cCCCCCccEEecCCCCCCccc--ChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVI--APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~l--p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
...+++++-|||+. +-+... =..++..|++||.|+++.|.+.-... - .--..+++|+.|.++.++..
T Consensus 142 ~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s---------~~~~~l~~lK~L~l~~CGls 210 (505)
T KOG3207|consen 142 SKILPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-S---------NTTLLLSHLKQLVLNSCGLS 210 (505)
T ss_pred hhhCCcceeecchh-hhHHhHHHHHHHHHhcccchhcccccccccCCcc-c---------cchhhhhhhheEEeccCCCC
Confidence 35689999999999 666644 23566889999999999998751211 0 12236789999999888854
Q ss_pred --cccccc-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc
Q 039375 82 --ILQEGF-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ 158 (311)
Q Consensus 82 --~lp~~~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~ 158 (311)
.+-..+ .+++|..+.+..+...++...+ +.-...+++|+++++ ..+..-.....
T Consensus 211 ~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--------------~~i~~~L~~LdLs~N---------~li~~~~~~~~ 267 (505)
T KOG3207|consen 211 WKDVQWILLTFPSLEVLYLEANEIILIKATS--------------TKILQTLQELDLSNN---------NLIDFDQGYKV 267 (505)
T ss_pred HHHHHHHHHhCCcHHHhhhhcccccceecch--------------hhhhhHHhhccccCC---------ccccccccccc
Confidence 221211 2677777776533211111000 022233444444332 11111100011
Q ss_pred ccccccceEEEeceEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeec
Q 039375 159 SRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVY 235 (311)
Q Consensus 159 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~ 235 (311)
..++.|..|.++. ..+++...++ +..-.-...|++|+.|++..+ ++.++.....+..+++|+.|.+.
T Consensus 268 ~~l~~L~~Lnls~--tgi~si~~~d-------~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 268 GTLPGLNQLNLSS--TGIASIAEPD-------VESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccccchhhhhccc--cCcchhcCCC-------ccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhcc
Confidence 5566777777654 1111111111 000011235788888988888 66665444555667777777765
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=2.8e-06 Score=71.92 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=34.7
Q ss_pred CccEEecCCCCCCc-ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEee
Q 039375 9 KLRLLDLRDCFHLK-VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDV 77 (311)
Q Consensus 9 ~L~~L~L~~c~~l~-~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~ 77 (311)
.|+||||+. ..|+ .---.+++.+++||.|.+.++.+.-.+ ...+..=.+|+.|+++.
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I-----------~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPI-----------VNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHH-----------HHHHhccccceeecccc
Confidence 477777777 5554 222345577777888877776553222 14555556777777765
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.43 E-value=4.3e-05 Score=67.23 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=68.5
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL 83 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l 83 (311)
|+.|++||.|+|++ +.|+.|-++.+..+..+|+|++..|.+. .+.+ .-+..+..|++|+++.|.+..+
T Consensus 270 f~~L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~----------~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTRNKLE-FVSS----------GMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred HhhcccceEeccCC-CccchhhhhhhcchhhhhhhhcCcchHH-HHHH----------HhhhccccceeeeecCCeeEEE
Confidence 67899999999999 8999996666699999999999999986 5533 5677899999999999998887
Q ss_pred ccccc--cccCcEEEEE
Q 039375 84 QEGFL--ARKLERFKIS 98 (311)
Q Consensus 84 p~~~~--l~~L~~l~~~ 98 (311)
..+.+ +..|..+.+.
T Consensus 338 ~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 338 APGAFQTLFSLSTLNLL 354 (498)
T ss_pred ecccccccceeeeeehc
Confidence 76654 6666666664
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.33 E-value=1.1e-05 Score=71.32 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=23.7
Q ss_pred CCCCccEEecCCCCCCccc-ChhHHHhccccceEEecccc
Q 039375 6 QVTKLRLLDLRDCFHLKVI-APNVISSLIRLEELCMGNCS 44 (311)
Q Consensus 6 ~L~~L~~L~L~~c~~l~~l-p~~i~~~L~~Lq~L~l~~~~ 44 (311)
+.+++.+|++.+|.+++.. -.++...+.+|++|++..|.
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~ 201 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS 201 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc
Confidence 4566667777777766533 23343456677777777654
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.28 E-value=0.00018 Score=65.58 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=69.8
Q ss_pred ccCCCC-CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 3 ALGQVT-KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 3 ~i~~L~-~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
..+.+. +|+.|++++ +.+..+|..+ +.+++|+.|++++|++. .+ | ...+.+++|+.|+++.|.+.
T Consensus 134 ~~~~~~~nL~~L~l~~-N~i~~l~~~~-~~l~~L~~L~l~~N~l~-~l--~---------~~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 134 LIGLLKSNLKELDLSD-NKIESLPSPL-RNLPNLKNLDLSFNDLS-DL--P---------KLLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred ccccchhhcccccccc-cchhhhhhhh-hccccccccccCCchhh-hh--h---------hhhhhhhhhhheeccCCccc
Confidence 345564 899999999 8999998776 99999999999999998 66 4 55558899999999999999
Q ss_pred ccccccc-cccCcEEEEEec
Q 039375 82 ILQEGFL-ARKLERFKISIG 100 (311)
Q Consensus 82 ~lp~~~~-l~~L~~l~~~~~ 100 (311)
.+|..+. ...|+.+.+..+
T Consensus 200 ~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 200 DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred cCchhhhhhhhhhhhhhcCC
Confidence 9999874 455888877633
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.26 E-value=4.7e-05 Score=69.96 Aligned_cols=82 Identities=23% Similarity=0.413 Sum_probs=40.0
Q ss_pred CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
+.++-+.+|..||.+. +.+..+|+.+ +.|.+|+.|.++.|++. .+ | +++..|+ |..||++.|++.
T Consensus 160 ~~ig~~~tl~~ld~s~-nei~slpsql-~~l~slr~l~vrRn~l~-~l--p---------~El~~Lp-Li~lDfScNkis 224 (722)
T KOG0532|consen 160 EEIGLLPTLAHLDVSK-NEIQSLPSQL-GYLTSLRDLNVRRNHLE-DL--P---------EELCSLP-LIRLDFSCNKIS 224 (722)
T ss_pred cccccchhHHHhhhhh-hhhhhchHHh-hhHHHHHHHHHhhhhhh-hC--C---------HHHhCCc-eeeeecccCcee
Confidence 3444444444444444 3444444444 44555555555544444 33 4 4444332 455555555555
Q ss_pred ccccccc-cccCcEEEEE
Q 039375 82 ILQEGFL-ARKLERFKIS 98 (311)
Q Consensus 82 ~lp~~~~-l~~L~~l~~~ 98 (311)
.+|-.+. |..|+.+.+.
T Consensus 225 ~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred ecchhhhhhhhheeeeec
Confidence 5555553 5555555544
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=2.1e-05 Score=66.80 Aligned_cols=136 Identities=16% Similarity=0.116 Sum_probs=80.1
Q ss_pred eeeEEccccCCcceeccccc-ccccccceEEEeceEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCc-ee
Q 039375 139 FTDICSMKLQAINNVEYISQ-SRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKEL-IH 216 (311)
Q Consensus 139 l~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l-~~ 216 (311)
+..+.+..|+++++...... +++..|..|.++.+....+.... .. -..-++|+.|.++||.+- ..
T Consensus 236 L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv---~V----------~hise~l~~LNlsG~rrnl~~ 302 (419)
T KOG2120|consen 236 LVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV---AV----------AHISETLTQLNLSGYRRNLQK 302 (419)
T ss_pred ceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH---HH----------hhhchhhhhhhhhhhHhhhhh
Confidence 78888888988877655544 66777888887751111100000 00 011357788888887421 11
Q ss_pred ecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecC
Q 039375 217 LVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC 295 (311)
Q Consensus 217 l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c 295 (311)
-........+++|.+|++++|..+..-...+ ...|+.|+++.++.|-.+..-- -......|+|.||++.+|
T Consensus 303 sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-------~~kf~~L~~lSlsRCY~i~p~~-~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 303 SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-------FFKFNYLQHLSLSRCYDIIPET-LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hHHHHHHHhCCceeeeccccccccCchHHHH-------HHhcchheeeehhhhcCCChHH-eeeeccCcceEEEEeccc
Confidence 0111223458888888888888766532222 2468888888888885542110 013456788888888876
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.00016 Score=61.51 Aligned_cols=91 Identities=11% Similarity=0.103 Sum_probs=53.4
Q ss_pred cccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccC
Q 039375 199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSA 278 (311)
Q Consensus 199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~ 278 (311)
.||++..+.+..| -+++.........++.+-.|+++. +.+.++...+. ...||.|..|.+.+.|-+..+-.
T Consensus 197 ~Fpnv~sv~v~e~-PlK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~------Ln~f~~l~dlRv~~~Pl~d~l~~- 267 (418)
T KOG2982|consen 197 IFPNVNSVFVCEG-PLKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDA------LNGFPQLVDLRVSENPLSDPLRG- 267 (418)
T ss_pred hcccchheeeecC-cccchhhcccCCCCCcchhhhhcc-cccccHHHHHH------HcCCchhheeeccCCcccccccC-
Confidence 4788888888888 445433334455577777777763 34555543222 24688888888887775555521
Q ss_pred CceecCCCccEEEEecCCCCeecCCC
Q 039375 279 NYTFKFPSLEYLEVIGCPKMKTFTSG 304 (311)
Q Consensus 279 ~~~~~~~~L~~L~i~~c~~l~~~~~~ 304 (311)
--=..|-|.+.++++++-++
T Consensus 268 ------~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 268 ------GERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ------CcceEEEEeeccceEEecCc
Confidence 22234455555555554443
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.12 E-value=5.1e-05 Score=73.47 Aligned_cols=79 Identities=19% Similarity=0.210 Sum_probs=41.4
Q ss_pred CCccEEecCCCCCCccc-ChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375 8 TKLRLLDLRDCFHLKVI-APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG 86 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~l-p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~ 86 (311)
.+|++|+++|...+..- |..+..-|++|+.|.+.+-.+. . +....-+.+++||..||+++.+++.+ .+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~-~---------~dF~~lc~sFpNL~sLDIS~TnI~nl-~G 190 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD-N---------DDFSQLCASFPNLRSLDISGTNISNL-SG 190 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec-c---------hhHHHHhhccCccceeecCCCCccCc-HH
Confidence 36777777773333222 3344233677777777664332 0 00114445677777777776666655 33
Q ss_pred cc-cccCcEEEE
Q 039375 87 FL-ARKLERFKI 97 (311)
Q Consensus 87 ~~-l~~L~~l~~ 97 (311)
+. +++|+.+.+
T Consensus 191 IS~LknLq~L~m 202 (699)
T KOG3665|consen 191 ISRLKNLQVLSM 202 (699)
T ss_pred HhccccHHHHhc
Confidence 32 444444443
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.06 E-value=0.0003 Score=68.22 Aligned_cols=81 Identities=27% Similarity=0.336 Sum_probs=53.1
Q ss_pred CCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375 5 GQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ 84 (311)
Q Consensus 5 ~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp 84 (311)
.++++|++||+++ +.++.+ .++ ++|++||+|.+.+-.+. ....+..+-+|++|+.||++.......+
T Consensus 170 ~sFpNL~sLDIS~-TnI~nl-~GI-S~LknLq~L~mrnLe~e----------~~~~l~~LF~L~~L~vLDIS~~~~~~~~ 236 (699)
T KOG3665|consen 170 ASFPNLRSLDISG-TNISNL-SGI-SRLKNLQVLSMRNLEFE----------SYQDLIDLFNLKKLRVLDISRDKNNDDT 236 (699)
T ss_pred hccCccceeecCC-CCccCc-HHH-hccccHHHHhccCCCCC----------chhhHHHHhcccCCCeeeccccccccch
Confidence 3577888888888 677766 454 88888888877765443 1233467778888888888765432222
Q ss_pred ---c-----ccccccCcEEEEE
Q 039375 85 ---E-----GFLARKLERFKIS 98 (311)
Q Consensus 85 ---~-----~~~l~~L~~l~~~ 98 (311)
. +..+++|+.++++
T Consensus 237 ~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 237 KIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred HHHHHHHHhcccCccccEEecC
Confidence 1 1127788888776
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.86 E-value=0.00014 Score=54.88 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=66.0
Q ss_pred CCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375 5 GQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ 84 (311)
Q Consensus 5 ~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp 84 (311)
....+|+..+|++ |.++++|+.+..+.+-+.+|++.+|.+. ++ | .++..++.|+.|++++|.....|
T Consensus 50 ~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neis-dv--P---------eE~Aam~aLr~lNl~~N~l~~~p 116 (177)
T KOG4579|consen 50 SKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEIS-DV--P---------EELAAMPALRSLNLRFNPLNAEP 116 (177)
T ss_pred hCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhh-hc--h---------HHHhhhHHhhhcccccCccccch
Confidence 4567888889999 8999999988677778999999999998 88 8 88999999999999999988888
Q ss_pred cccc-cccCcEEE
Q 039375 85 EGFL-ARKLERFK 96 (311)
Q Consensus 85 ~~~~-l~~L~~l~ 96 (311)
+-+. +.++..++
T Consensus 117 ~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 117 RVIAPLIKLDMLD 129 (177)
T ss_pred HHHHHHHhHHHhc
Confidence 8664 55555554
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.83 E-value=0.00094 Score=58.04 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=37.2
Q ss_pred ccccCccEEEEecCCCceeecCcc-----ccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeeccccc
Q 039375 198 VSFRNLTKLVAVGCKELIHLVTSS-----TAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLD 270 (311)
Q Consensus 198 ~~l~~L~~L~l~~~~~l~~l~~~~-----~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~ 270 (311)
+.|++|+.|.+.+| .++. .... .-...|+|++|.+.+|.-..+-.. .........|.|+.|.+.+|.
T Consensus 238 ~s~~~L~El~l~dc-ll~~-~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~----~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 238 SSWPHLRELNLGDC-LLEN-EGAIAFVDALKESAPSLEVLELAGNEITRDAAL----ALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccchheeeccccc-cccc-ccHHHHHHHHhccCCCCceeccCcchhHHHHHH----HHHHHHhcchhhHHhcCCccc
Confidence 45678888888888 6665 2222 123477888888877652221100 001111235677777777663
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.70 E-value=0.00045 Score=58.95 Aligned_cols=81 Identities=19% Similarity=0.150 Sum_probs=60.3
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
++.-+++++.|+++. |.|..+.. +..|++|++|++++|.+. +++| .=..|-|+++|.+..|.++.
T Consensus 302 SvKL~Pkir~L~lS~-N~i~~v~n--La~L~~L~~LDLS~N~Ls-~~~G-----------wh~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 302 SVKLAPKLRRLILSQ-NRIRTVQN--LAELPQLQLLDLSGNLLA-ECVG-----------WHLKLGNIKTLKLAQNKIET 366 (490)
T ss_pred hhhhccceeEEeccc-cceeeehh--hhhcccceEeecccchhH-hhhh-----------hHhhhcCEeeeehhhhhHhh
Confidence 566688999999999 88888887 599999999999999876 5532 11246677788887777776
Q ss_pred cccccccccCcEEEEE
Q 039375 83 LQEGFLARKLERFKIS 98 (311)
Q Consensus 83 lp~~~~l~~L~~l~~~ 98 (311)
+...-.+.+|.+++..
T Consensus 367 LSGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 367 LSGLRKLYSLVNLDLS 382 (490)
T ss_pred hhhhHhhhhheecccc
Confidence 6544346667776665
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.69 E-value=0.00068 Score=62.35 Aligned_cols=80 Identities=24% Similarity=0.256 Sum_probs=63.3
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL 83 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l 83 (311)
++.+++|.+|++.+ +.|..+...+ ..+.+|++|++++|.|. .+ ..+..+..|+.|++.+|.+..+
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~~l-~~~~~L~~L~ls~N~I~-~i------------~~l~~l~~L~~L~l~~N~i~~~ 155 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIENLL-SSLVNLQVLDLSFNKIT-KL------------EGLSTLTLLKELNLSGNLISDI 155 (414)
T ss_pred cccccceeeeeccc-cchhhcccch-hhhhcchheeccccccc-cc------------cchhhccchhhheeccCcchhc
Confidence 67788999999999 8888887655 88999999999999887 66 6667777788899988888877
Q ss_pred ccccccccCcEEEEE
Q 039375 84 QEGFLARKLERFKIS 98 (311)
Q Consensus 84 p~~~~l~~L~~l~~~ 98 (311)
...-.+.+|+.+.++
T Consensus 156 ~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 156 SGLESLKSLKLLDLS 170 (414)
T ss_pred cCCccchhhhcccCC
Confidence 665446666666665
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.36 E-value=0.0069 Score=48.91 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=17.1
Q ss_pred CCCccEEecCCCCCCcccChhHHHhccccceEEeccccce
Q 039375 7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVE 46 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~ 46 (311)
+..|..|.++. |.|+.|.+.+..-+++|+.|.+.+|.+.
T Consensus 63 l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 63 LPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccccceEEecC-CcceeeccchhhhccccceEEecCcchh
Confidence 34444444444 4444444444222334444444444443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.0014 Score=56.00 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=42.1
Q ss_pred CCCccEEecCCCCCCcccC--hhHHHhccccceEEeccccceeeeecccccccccccccc-CCCCCccEEEEeecC
Q 039375 7 VTKLRLLDLRDCFHLKVIA--PNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDEL-MLLPWLTTLEIDVKN 79 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp--~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l-~~L~~L~~L~l~~~~ 79 (311)
.++++.|||.+ |.|+.-. ..++.+|+.|++|+++.|.+...+ +.+ ..+.+|+.|-+.+.+
T Consensus 70 ~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I------------~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 70 VTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDI------------KSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred hhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCcc------------ccCcccccceEEEEEcCCC
Confidence 56778899999 6776332 245578999999999999876333 333 356788888886544
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.99 E-value=0.0037 Score=52.30 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=52.7
Q ss_pred cCCCCCccEEecCCCC-CCc-ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 4 LGQVTKLRLLDLRDCF-HLK-VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~-~l~-~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
+-.|++|++|.+++++ .+. .++.-+ .++++|++|++++|++. .+.. +..++.+.+|..|++.++...
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~-~lst---------l~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIK-DLST---------LRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccc-cccc---------cchhhhhcchhhhhcccCCcc
Confidence 3457788888888831 222 444433 66688888888888876 3422 266677778888888776655
Q ss_pred cccc---ccc--cccCcEEEE
Q 039375 82 ILQE---GFL--ARKLERFKI 97 (311)
Q Consensus 82 ~lp~---~~~--l~~L~~l~~ 97 (311)
.+-. .++ +++|.+++.
T Consensus 130 ~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 130 NLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred ccccHHHHHHHHhhhhccccc
Confidence 4332 122 667777654
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.89 E-value=0.0017 Score=59.73 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=65.4
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL 83 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l 83 (311)
+..+++|++|++++ +.|+.+.. +..+..|+.|++.+|.+. .+ .++..+.+|+.+++..|.+..+
T Consensus 114 l~~~~~L~~L~ls~-N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~------------~~~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSF-NKITKLEG--LSTLTLLKELNLSGNLIS-DI------------SGLESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred hhhhhcchheeccc-cccccccc--hhhccchhhheeccCcch-hc------------cCCccchhhhcccCCcchhhhh
Confidence 45699999999999 89999977 689999999999999987 66 6667799999999999988888
Q ss_pred ccc--cccccCcEEEEE
Q 039375 84 QEG--FLARKLERFKIS 98 (311)
Q Consensus 84 p~~--~~l~~L~~l~~~ 98 (311)
... -.+.+++.+++.
T Consensus 178 e~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 178 ENDELSELISLEELDLG 194 (414)
T ss_pred hhhhhhhccchHHHhcc
Confidence 772 345666666664
No 55
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.79 E-value=0.0031 Score=31.73 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=10.8
Q ss_pred CccEEecCCCCCCcccChh
Q 039375 9 KLRLLDLRDCFHLKVIAPN 27 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~ 27 (311)
+|++|++++| .++.+|++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 4566666663 55566655
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.68 E-value=0.00063 Score=63.46 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=37.4
Q ss_pred CCCccEEecCCCCCCcccC-hhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC
Q 039375 7 VTKLRLLDLRDCFHLKVIA-PNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN 79 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp-~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~ 79 (311)
.+.|+.|.+.+|..+.... ..+...+++|++|++++|...+... + .....-...+++|+.|+++...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~-----~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS-P-----LLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc-h-----hHhhhhhhhcCCcCccchhhhh
Confidence 5677888888887777532 1223778888888888742111110 0 0000122334777777776544
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.0012 Score=55.88 Aligned_cols=60 Identities=30% Similarity=0.412 Sum_probs=31.7
Q ss_pred CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC
Q 039375 7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN 79 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~ 79 (311)
++.|.+|.|+- |+|+.+-+ +.++++|++|++..|.|. .+ ..+.-++++++|++|++..|.
T Consensus 40 Mp~lEVLsLSv-NkIssL~p--l~rCtrLkElYLRkN~I~-sl---------dEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 40 MPLLEVLSLSV-NKISSLAP--LQRCTRLKELYLRKNCIE-SL---------DELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred cccceeEEeec-cccccchh--HHHHHHHHHHHHHhcccc-cH---------HHHHHHhcCchhhhHhhccCC
Confidence 44455555554 45554444 355555555555555443 22 223555667777777776544
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.40 E-value=0.028 Score=50.97 Aligned_cols=38 Identities=21% Similarity=0.409 Sum_probs=24.2
Q ss_pred CccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEE
Q 039375 202 NLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEV 243 (311)
Q Consensus 202 ~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~ 243 (311)
+|+.|.+.+|..++.+ + +.+ .++|+.|++++|..+..+
T Consensus 73 sLtsL~Lsnc~nLtsL-P-~~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 73 ELTEITIENCNNLTTL-P-GSI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred CCcEEEccCCCCcccC-C-chh--hhhhhheEccCccccccc
Confidence 5788888877776652 2 222 247788888877655443
No 59
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.002 Score=51.91 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=48.7
Q ss_pred ccccCccEEEEecCCCceeecCccccc-cCCCCCEEeeccCcCceEEeccCCcccccccccccccceeeccccccccee
Q 039375 198 VSFRNLTKLVAVGCKELIHLVTSSTAK-TLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSF 275 (311)
Q Consensus 198 ~~l~~L~~L~l~~~~~l~~l~~~~~l~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~ 275 (311)
..++.++.|.+.+|..+.+ +..+.+. -.++|+.|+|++|+.+++-.... ...|++|+.|.+.+++.....
T Consensus 122 ~~l~~i~~l~l~~ck~~dD-~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-------L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDD-WCLERLGGLAPSLQDLDLSGCPRITDGGLAC-------LLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred hccchhhhheeccccchhh-HHHHHhcccccchheeeccCCCeechhHHHH-------HHHhhhhHHHHhcCchhhhch
Confidence 3567788888888888877 4444444 37888899998888877652221 256788888888887655443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.24 E-value=0.026 Score=45.65 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=19.3
Q ss_pred cccCCCCCccEEEEeecCccccccccc--cccCcEEEEE
Q 039375 62 DELMLLPWLTTLEIDVKNDSILQEGFL--ARKLERFKIS 98 (311)
Q Consensus 62 ~~l~~L~~L~~L~l~~~~~~~lp~~~~--l~~L~~l~~~ 98 (311)
..+..+++|.+|.+.+|.+..+...+. +++|..+.+.
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 344455555566665555555555443 4455555443
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=0.00095 Score=56.43 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=64.2
Q ss_pred CCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccc
Q 039375 6 QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQE 85 (311)
Q Consensus 6 ~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~ 85 (311)
.|.+.+.|+.+|| .+..|.- +.+|+.|++|.++-|.|+ .+ ..+..+++|+.|.+..|.+..+-+
T Consensus 17 dl~~vkKLNcwg~-~L~DIsi--c~kMp~lEVLsLSvNkIs-sL------------~pl~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDISI--CEKMPLLEVLSLSVNKIS-SL------------APLQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred HHHHhhhhcccCC-CccHHHH--HHhcccceeEEeeccccc-cc------------hhHHHHHHHHHHHHHhcccccHHH
Confidence 3667888999995 6666654 789999999999999987 55 778889999999999999888877
Q ss_pred ccc---cccCcEEEEEe
Q 039375 86 GFL---ARKLERFKISI 99 (311)
Q Consensus 86 ~~~---l~~L~~l~~~~ 99 (311)
... +++|+.+|+..
T Consensus 81 L~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 81 LEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHHHhcCchhhhHhhcc
Confidence 553 78888888863
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.63 E-value=0.028 Score=28.17 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=12.6
Q ss_pred ccceEEeccccceeee
Q 039375 34 RLEELCMGNCSVEWEV 49 (311)
Q Consensus 34 ~Lq~L~l~~~~~~~~~ 49 (311)
+||+|++++|.++ .+
T Consensus 1 ~L~~Ldls~n~l~-~i 15 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SI 15 (22)
T ss_dssp TESEEEETSSEES-EE
T ss_pred CccEEECCCCcCE-eC
Confidence 5888999999887 77
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=0.0021 Score=51.83 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=64.7
Q ss_pred CccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCce
Q 039375 202 NLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYT 281 (311)
Q Consensus 202 ~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~ 281 (311)
.++.++-+++ .+.. .....+.+++.++.|.+.+|..+.++.-.-- -+.+++|+.|++++|+++++.... ..
T Consensus 102 ~IeaVDAsds-~I~~-eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l------~~~~~~L~~L~lsgC~rIT~~GL~-~L 172 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMY-EGLEHLRDLRSIKSLSLANCKYFDDWCLERL------GGLAPSLQDLDLSGCPRITDGGLA-CL 172 (221)
T ss_pred eEEEEecCCc-hHHH-HHHHHHhccchhhhheeccccchhhHHHHHh------cccccchheeeccCCCeechhHHH-HH
Confidence 3577777777 6666 5667788999999999999998877643111 136899999999999999887321 34
Q ss_pred ecCCCccEEEEecCC
Q 039375 282 FKFPSLEYLEVIGCP 296 (311)
Q Consensus 282 ~~~~~L~~L~i~~c~ 296 (311)
..+++|+.|.+.+.+
T Consensus 173 ~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 173 LKLKNLRRLHLYDLP 187 (221)
T ss_pred HHhhhhHHHHhcCch
Confidence 578899988888764
No 64
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.57 E-value=0.0029 Score=60.34 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=27.3
Q ss_pred CCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccce
Q 039375 5 GQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVE 46 (311)
Q Consensus 5 ~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~ 46 (311)
.-+++|++|||+. |++.++. . +.+|.+|++||+++|.+.
T Consensus 184 qll~ale~LnLsh-Nk~~~v~-~-Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 184 QLLPALESLNLSH-NKFTKVD-N-LRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred HHHHHhhhhccch-hhhhhhH-H-HHhcccccccccccchhc
Confidence 3456777777777 6766666 3 477777777777777765
No 65
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.15 E-value=0.046 Score=28.54 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=17.0
Q ss_pred CCCccEEecCCCCCCcccChhHH
Q 039375 7 VTKLRLLDLRDCFHLKVIAPNVI 29 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp~~i~ 29 (311)
|++|++|+|++ +.++.+|++++
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSN-NQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHHHc
Confidence 56788888888 68888887653
No 66
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.15 E-value=0.046 Score=28.54 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=17.0
Q ss_pred CCCccEEecCCCCCCcccChhHH
Q 039375 7 VTKLRLLDLRDCFHLKVIAPNVI 29 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp~~i~ 29 (311)
|++|++|+|++ +.++.+|++++
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSN-NQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHHHc
Confidence 56788888888 68888887653
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.12 E-value=0.04 Score=50.01 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=56.0
Q ss_pred cccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccC
Q 039375 199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSA 278 (311)
Q Consensus 199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~ 278 (311)
.+.+++.|++++| .++.+ + . + -++|+.|.+++|..++.+.. .-.++|++|.+.+|..++++.
T Consensus 50 ~~~~l~~L~Is~c-~L~sL-P-~-L--P~sLtsL~Lsnc~nLtsLP~----------~LP~nLe~L~Ls~Cs~L~sLP-- 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL-P-V-L--PNELTEITIENCNNLTTLPG----------SIPEGLEKLTVCHCPEISGLP-- 111 (426)
T ss_pred HhcCCCEEEeCCC-CCccc-C-C-C--CCCCcEEEccCCCCcccCCc----------hhhhhhhheEccCcccccccc--
Confidence 4688999999999 88874 3 1 1 23799999999998766531 123579999999998877652
Q ss_pred CceecCCCccEEEEec--CCCCeecC
Q 039375 279 NYTFKFPSLEYLEVIG--CPKMKTFT 302 (311)
Q Consensus 279 ~~~~~~~~L~~L~i~~--c~~l~~~~ 302 (311)
++|+.|.+.. |..+..+|
T Consensus 112 ------~sLe~L~L~~n~~~~L~~LP 131 (426)
T PRK15386 112 ------ESVRSLEIKGSATDSIKNVP 131 (426)
T ss_pred ------cccceEEeCCCCCcccccCc
Confidence 3566666643 33444444
No 68
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.61 E-value=0.0061 Score=46.26 Aligned_cols=67 Identities=10% Similarity=0.117 Sum_probs=55.8
Q ss_pred CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375 7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG 86 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~ 86 (311)
.+.++.|+|.+ +.|..+|.++ ..++.|+.|+++.|++. .. | +-+..|.++-+|+...+....+|-.
T Consensus 76 f~t~t~lNl~~-neisdvPeE~-Aam~aLr~lNl~~N~l~-~~--p---------~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 76 FPTATTLNLAN-NEISDVPEEL-AAMPALRSLNLRFNPLN-AE--P---------RVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cchhhhhhcch-hhhhhchHHH-hhhHHhhhcccccCccc-cc--h---------HHHHHHHhHHHhcCCCCccccCcHH
Confidence 45788999999 8999999996 99999999999999987 44 4 6666788888898887777777665
Q ss_pred c
Q 039375 87 F 87 (311)
Q Consensus 87 ~ 87 (311)
+
T Consensus 142 l 142 (177)
T KOG4579|consen 142 L 142 (177)
T ss_pred H
Confidence 4
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.29 E-value=0.059 Score=25.10 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=6.7
Q ss_pred CccEEecCCCCCCcccC
Q 039375 9 KLRLLDLRDCFHLKVIA 25 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp 25 (311)
+|+.|++++| .++++|
T Consensus 2 ~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCC-CCCCCc
Confidence 5566666663 355444
No 70
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=92.71 E-value=0.013 Score=56.02 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=57.8
Q ss_pred CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc-
Q 039375 9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF- 87 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~- 87 (311)
+|.+.+.++ |.+..+..++ .=++.||.|++++|.+. .+ +.+..|+.|++||+++|....+|..-
T Consensus 165 ~L~~a~fsy-N~L~~mD~SL-qll~ale~LnLshNk~~-~v------------~~Lr~l~~LkhLDlsyN~L~~vp~l~~ 229 (1096)
T KOG1859|consen 165 KLATASFSY-NRLVLMDESL-QLLPALESLNLSHNKFT-KV------------DNLRRLPKLKHLDLSYNCLRHVPQLSM 229 (1096)
T ss_pred hHhhhhcch-hhHHhHHHHH-HHHHHhhhhccchhhhh-hh------------HHHHhcccccccccccchhccccccch
Confidence 355566666 7778788776 88899999999999887 65 78889999999999999988887632
Q ss_pred ccccCcEEEEE
Q 039375 88 LARKLERFKIS 98 (311)
Q Consensus 88 ~l~~L~~l~~~ 98 (311)
.--+|+.+.+.
T Consensus 230 ~gc~L~~L~lr 240 (1096)
T KOG1859|consen 230 VGCKLQLLNLR 240 (1096)
T ss_pred hhhhheeeeec
Confidence 11236666665
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.25 E-value=0.051 Score=45.63 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=35.3
Q ss_pred CCCccEEecCCCCCCcccChhHHHhccccceEEeccc--cceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNC--SVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~--~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
+.+|.+|++.++ .++.+-. +.+|++||+|.++.| ++...+ + --+..+++|++++++.|++..
T Consensus 42 ~~~le~ls~~n~-gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l--~---------vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 42 FVELELLSVINV-GLTTLTN--FPKLPKLKKLELSDNYRRVSGGL--E---------VLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred ccchhhhhhhcc-ceeeccc--CCCcchhhhhcccCCcccccccc--e---------ehhhhCCceeEEeecCCcccc
Confidence 445566666553 2222222 256677888888777 444343 1 222344788888887777665
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=89.89 E-value=0.19 Score=42.78 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=44.5
Q ss_pred cCCCCCccEEecCCCCCCc----ccChh------HHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEE
Q 039375 4 LGQVTKLRLLDLRDCFHLK----VIAPN------VISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTL 73 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~----~lp~~------i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L 73 (311)
|.+-.+|+..++++ -..+ .+|++ .+-++++||..+++.|.+.-+. | ..-.+-+..-..|++|
T Consensus 54 ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~--~-----e~L~d~is~~t~l~HL 125 (388)
T COG5238 54 IANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF--P-----EELGDLISSSTDLVHL 125 (388)
T ss_pred HhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc--c-----hHHHHHHhcCCCceeE
Confidence 34456777777776 3322 23332 1256788899999888775444 3 0000233445788888
Q ss_pred EEeecCcccccc
Q 039375 74 EIDVKNDSILQE 85 (311)
Q Consensus 74 ~l~~~~~~~lp~ 85 (311)
.+++|+.+.+..
T Consensus 126 ~l~NnGlGp~aG 137 (388)
T COG5238 126 KLNNNGLGPIAG 137 (388)
T ss_pred EeecCCCCccch
Confidence 898888766554
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=88.04 E-value=0.15 Score=47.50 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=17.5
Q ss_pred ccCccEEEEecCCCceeecCcccc-ccCCCCCEEeeccCcC
Q 039375 200 FRNLTKLVAVGCKELIHLVTSSTA-KTLVRLVTVQVYGCRA 239 (311)
Q Consensus 200 l~~L~~L~l~~~~~l~~l~~~~~l-~~l~~L~~L~l~~c~~ 239 (311)
+++|+.++++.|..+++ .....+ ..+++|+.|.+.+|..
T Consensus 242 ~~~L~~l~l~~~~~isd-~~l~~l~~~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTD-IGLSALASRCPNLETLSLSNCSN 281 (482)
T ss_pred cCCcCccchhhhhccCc-hhHHHHHhhCCCcceEccCCCCc
Confidence 34555555555533444 222222 2245555555555543
No 74
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.40 E-value=0.35 Score=25.16 Aligned_cols=16 Identities=31% Similarity=0.785 Sum_probs=13.1
Q ss_pred CCCccEEEEecCCCCe
Q 039375 284 FPSLEYLEVIGCPKMK 299 (311)
Q Consensus 284 ~~~L~~L~i~~c~~l~ 299 (311)
+++|++|++++|+++.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 5788889999998875
No 75
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=84.31 E-value=0.46 Score=41.83 Aligned_cols=70 Identities=33% Similarity=0.445 Sum_probs=41.4
Q ss_pred cCCCCCccEEecCCCCCCcccCh-hH---HHhccccceEEeccccceeeeeccccccccccccccC-CCCCccEEEEeec
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAP-NV---ISSLIRLEELCMGNCSVEWEVERANTERSNASLDELM-LLPWLTTLEIDVK 78 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~-~i---~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~-~L~~L~~L~l~~~ 78 (311)
+..+++|++|||++ |.++.... .+ ++.+++|++|++++|.+. -.| ..+.+..+. ..++|+.|++.+|
T Consensus 209 l~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dcll~--~~G-----a~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDCLLE--NEG-----AIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccccccc--ccc-----HHHHHHHHhccCCCCceeccCcc
Confidence 45678888999988 66653322 11 245778888888888764 111 111112221 2577888888776
Q ss_pred Ccc
Q 039375 79 NDS 81 (311)
Q Consensus 79 ~~~ 81 (311)
.+.
T Consensus 281 eIt 283 (382)
T KOG1909|consen 281 EIT 283 (382)
T ss_pred hhH
Confidence 643
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.28 E-value=4.7 Score=29.82 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=42.8
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
.+....+|+.+.+.. .++.++...+..+.+|+.+.+..+ +. .+.. ..+..+.+|+.+.+.. ....
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~----------~~F~~~~~l~~i~~~~-~~~~ 71 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LT-SIGD----------NAFSNCKSLESITFPN-NLKS 71 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TS-CE-T----------TTTTT-TT-EEEEETS-TT-E
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-cc-ccce----------eeeecccccccccccc-cccc
Confidence 356677888888875 467787766678888888888774 43 4421 4455666788888853 4555
Q ss_pred cccccc--cccCcEEEE
Q 039375 83 LQEGFL--ARKLERFKI 97 (311)
Q Consensus 83 lp~~~~--l~~L~~l~~ 97 (311)
++.... ..+|+.+.+
T Consensus 72 i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp E-TTTTTT-TTECEEEE
T ss_pred ccccccccccccccccc
Confidence 555432 566666655
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=77.09 E-value=1.5 Score=22.10 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=8.7
Q ss_pred ccccceEEeccccce
Q 039375 32 LIRLEELCMGNCSVE 46 (311)
Q Consensus 32 L~~Lq~L~l~~~~~~ 46 (311)
+++|++|++++|.+.
T Consensus 1 ~~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQIT 15 (24)
T ss_dssp -TT-SEEE-TSSBEH
T ss_pred CCCCCEEEccCCcCC
Confidence 357788888887754
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=75.02 E-value=7.7 Score=28.61 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=46.2
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
.+....+|+.+.+.+ + +..++...+..+.+|+.+.+.. .+. .+. . ..+..+.+|+.+.+..+ ...
T Consensus 30 ~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~-~---------~~F~~~~~l~~i~~~~~-~~~ 94 (129)
T PF13306_consen 30 AFSNCTSLKSINFPN-N-LTSIGDNAFSNCKSLESITFPN-NLK-SIG-D---------NAFSNCTNLKNIDIPSN-ITE 94 (129)
T ss_dssp TTTT-TT-SEEEESS-T-TSCE-TTTTTT-TT-EEEEETS-TT--EE--T---------TTTTT-TTECEEEETTT--BE
T ss_pred hcccccccccccccc-c-ccccceeeeecccccccccccc-ccc-ccc-c---------ccccccccccccccCcc-ccE
Confidence 456777899999987 4 7888887778888999999976 333 442 1 45566889999988543 555
Q ss_pred cccccc-cccCcEEEE
Q 039375 83 LQEGFL-ARKLERFKI 97 (311)
Q Consensus 83 lp~~~~-l~~L~~l~~ 97 (311)
++.... -.+|+.+.+
T Consensus 95 i~~~~f~~~~l~~i~~ 110 (129)
T PF13306_consen 95 IGSSSFSNCNLKEINI 110 (129)
T ss_dssp EHTTTTTT-T--EEE-
T ss_pred EchhhhcCCCceEEEE
Confidence 555442 125555443
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.87 E-value=2.8 Score=21.92 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=11.2
Q ss_pred ccccceEEeccccceeee
Q 039375 32 LIRLEELCMGNCSVEWEV 49 (311)
Q Consensus 32 L~~Lq~L~l~~~~~~~~~ 49 (311)
+.+|++|++++|.|. .+
T Consensus 1 L~~L~~L~L~~NkI~-~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIK-KI 17 (26)
T ss_pred CCccCEEECCCCccc-ee
Confidence 356777777777765 44
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.72 E-value=3.5 Score=21.55 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=11.1
Q ss_pred CccEEecCCCCCCcccCh
Q 039375 9 KLRLLDLRDCFHLKVIAP 26 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~ 26 (311)
+|++|++++ |.++.+|+
T Consensus 3 ~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSN-NQLTSLPE 19 (26)
T ss_pred ccceeecCC-CccccCcc
Confidence 566677777 56666665
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=57.46 E-value=0.36 Score=40.25 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=59.1
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL 83 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l 83 (311)
|......+.||++. +.+-.+...+ +.+..|..|+++.+.+. .+ | +..+.+..+++++.+.|..+..
T Consensus 38 i~~~kr~tvld~~s-~r~vn~~~n~-s~~t~~~rl~~sknq~~-~~--~---------~d~~q~~e~~~~~~~~n~~~~~ 103 (326)
T KOG0473|consen 38 IASFKRVTVLDLSS-NRLVNLGKNF-SILTRLVRLDLSKNQIK-FL--P---------KDAKQQRETVNAASHKNNHSQQ 103 (326)
T ss_pred hhccceeeeehhhh-hHHHhhccch-HHHHHHHHHhccHhhHh-hC--h---------hhHHHHHHHHHHHhhccchhhC
Confidence 34455667788887 5666666666 77888888888888876 44 6 7777777888888888888888
Q ss_pred ccccc-cccCcEEEEE
Q 039375 84 QEGFL-ARKLERFKIS 98 (311)
Q Consensus 84 p~~~~-l~~L~~l~~~ 98 (311)
|.... .+.+++....
T Consensus 104 p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 104 PKSQKKEPHPKKNEQK 119 (326)
T ss_pred CccccccCCcchhhhc
Confidence 88775 6666666543
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.49 E-value=9.9 Score=20.00 Aligned_cols=14 Identities=43% Similarity=0.506 Sum_probs=8.2
Q ss_pred CCccEEecCCCCCCc
Q 039375 8 TKLRLLDLRDCFHLK 22 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~ 22 (311)
++|++|+|++ |.++
T Consensus 2 ~~L~~LdL~~-N~i~ 15 (28)
T smart00368 2 PSLRELDLSN-NKLG 15 (28)
T ss_pred CccCEEECCC-CCCC
Confidence 3566666666 4443
No 83
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=49.91 E-value=11 Score=32.61 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=54.0
Q ss_pred CCCCccEEecCCCCCCc-ccChhH---HHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc-
Q 039375 6 QVTKLRLLDLRDCFHLK-VIAPNV---ISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND- 80 (311)
Q Consensus 6 ~L~~L~~L~L~~c~~l~-~lp~~i---~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~- 80 (311)
.+..++.++|+| |.|+ .--.++ +.+-.+|++-+++.-... ....-..+.-..-++.+-.+++|++.+++.|-.
T Consensus 28 ~~d~~~evdLSG-NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftg-r~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 28 MMDELVEVDLSG-NTIGTEAMEELCNVIANVRNLRVVNFSDAFTG-RDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred hhcceeEEeccC-CcccHHHHHHHHHHHhhhcceeEeehhhhhhc-ccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 467788899999 6665 333333 134456777777654321 110000011122335667789999999987763
Q ss_pred cccccccc-----cccCcEEEEEecC
Q 039375 81 SILQEGFL-----ARKLERFKISIGN 101 (311)
Q Consensus 81 ~~lp~~~~-----l~~L~~l~~~~~~ 101 (311)
...|+.+. ...|.++.+..+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC
Confidence 34444432 5788888887543
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.17 E-value=49 Score=37.76 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=27.1
Q ss_pred ecCCCCCCcccChhHHHhccccceEEeccccc
Q 039375 14 DLRDCFHLKVIAPNVISSLIRLEELCMGNCSV 45 (311)
Q Consensus 14 ~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~ 45 (311)
||++ |.|..||.+.+..|.+|++|+|++|+.
T Consensus 1 DLSn-N~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISN-NKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCC-CcCCccChHHhccCCCceEEEeeCCcc
Confidence 5777 899999999889999999999998863
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=24.81 E-value=3.8 Score=34.38 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=49.2
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN 79 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~ 79 (311)
+..++.|..|+++. +.+..+|.+. +.+..+..++...|... .. | .+.+.++++++++...+.
T Consensus 61 ~s~~t~~~rl~~sk-nq~~~~~~d~-~q~~e~~~~~~~~n~~~-~~--p---------~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 61 FSILTRLVRLDLSK-NQIKFLPKDA-KQQRETVNAASHKNNHS-QQ--P---------KSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred hHHHHHHHHHhccH-hhHhhChhhH-HHHHHHHHHHhhccchh-hC--C---------ccccccCCcchhhhccCc
Confidence 44466777788888 7888889887 99888999988888766 55 7 888888999988886544
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.65 E-value=28 Score=33.00 Aligned_cols=87 Identities=20% Similarity=0.206 Sum_probs=52.0
Q ss_pred ccccCccEEEEecCCCceeecCcccc-ccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceec
Q 039375 198 VSFRNLTKLVAVGCKELIHLVTSSTA-KTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFC 276 (311)
Q Consensus 198 ~~l~~L~~L~l~~~~~l~~l~~~~~l-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~ 276 (311)
..++.+..+.++++ ++..+.....+ +..|+|..|+|++++...+... .........|++|-+.+.|=.+.+.
T Consensus 215 ~n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~------el~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 215 ENFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES------ELDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred cCCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchh------hhhhhcCCCHHHeeecCCccccchh
Confidence 35778888889888 77776544433 4588999999998732111100 1111345557888888877555553
Q ss_pred cCC-----ceecCCCccEEE
Q 039375 277 SAN-----YTFKFPSLEYLE 291 (311)
Q Consensus 277 ~~~-----~~~~~~~L~~L~ 291 (311)
... ....||+|..|+
T Consensus 288 ~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 288 DRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhHHHHHHHHHhcchheeec
Confidence 221 123577776664
Done!