Query 039375
Match_columns 311
No_of_seqs 127 out of 1977
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 15:16:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 2E-18 6.8E-23 152.2 17.0 228 7-293 80-309 (328)
2 4fcg_A Uncharacterized protein 99.8 6.1E-18 2.1E-22 149.1 16.2 202 1-267 97-309 (328)
3 3o6n_A APL1; leucine-rich repe 99.7 2.5E-17 8.5E-22 148.5 14.5 89 194-296 241-329 (390)
4 2id5_A Lingo-1, leucine rich r 99.7 3.8E-17 1.3E-21 151.1 15.7 256 2-296 50-331 (477)
5 3oja_B Anopheles plasmodium-re 99.7 3E-17 1E-21 156.1 14.1 249 5-295 72-334 (597)
6 3o6n_A APL1; leucine-rich repe 99.7 9.4E-17 3.2E-21 144.7 15.3 249 4-296 65-350 (390)
7 3v47_A TOLL-like receptor 5B a 99.7 2.4E-16 8.3E-21 144.7 18.1 86 2-98 48-137 (455)
8 4eco_A Uncharacterized protein 99.7 4.7E-17 1.6E-21 155.8 13.1 86 1-99 199-314 (636)
9 1ogq_A PGIP-2, polygalacturona 99.7 8E-17 2.7E-21 141.0 13.0 231 2-299 70-305 (313)
10 3rgz_A Protein brassinosteroid 99.7 4.9E-16 1.7E-20 151.9 17.8 91 194-296 625-715 (768)
11 3oja_B Anopheles plasmodium-re 99.7 2.3E-16 7.8E-21 150.0 14.6 243 2-296 93-356 (597)
12 2id5_A Lingo-1, leucine rich r 99.7 1.3E-15 4.5E-20 140.7 19.2 249 8-295 32-306 (477)
13 3zyi_A Leucine-rich repeat-con 99.7 5E-16 1.7E-20 142.7 16.0 224 8-296 75-301 (452)
14 4ecn_A Leucine-rich repeat pro 99.7 1.6E-16 5.4E-21 156.0 12.6 85 1-98 441-556 (876)
15 4fmz_A Internalin; leucine ric 99.7 5.4E-16 1.8E-20 137.4 14.8 79 4-98 62-140 (347)
16 3t6q_A CD180 antigen; protein- 99.7 9.9E-16 3.4E-20 145.7 17.4 86 1-98 50-137 (606)
17 4fmz_A Internalin; leucine ric 99.7 5E-16 1.7E-20 137.6 13.8 79 4-98 84-163 (347)
18 3rgz_A Protein brassinosteroid 99.7 7.4E-16 2.5E-20 150.6 15.8 252 6-297 267-550 (768)
19 4eco_A Uncharacterized protein 99.7 5.9E-16 2E-20 148.2 14.7 84 199-298 511-600 (636)
20 3t6q_A CD180 antigen; protein- 99.7 1E-15 3.5E-20 145.6 16.2 87 1-99 74-162 (606)
21 3zyj_A Leucine-rich repeat-con 99.7 1.1E-15 3.6E-20 140.1 15.7 224 8-296 64-290 (440)
22 3vq2_A TLR4, TOLL-like recepto 99.7 2.8E-15 9.6E-20 142.5 18.2 43 3-46 51-93 (606)
23 3bz5_A Internalin-J, INLJ; leu 99.7 6.5E-16 2.2E-20 142.1 13.1 78 3-98 37-114 (457)
24 3v47_A TOLL-like receptor 5B a 99.7 1.5E-15 5.2E-20 139.4 15.3 81 8-99 30-112 (455)
25 1xku_A Decorin; proteoglycan, 99.7 2.5E-15 8.5E-20 132.3 15.8 239 8-297 52-305 (330)
26 3j0a_A TOLL-like receptor 5; m 99.6 2.6E-15 9.1E-20 148.1 17.1 87 1-98 41-131 (844)
27 1o6v_A Internalin A; bacterial 99.6 4.3E-15 1.5E-19 137.0 17.3 80 4-99 64-143 (466)
28 4ecn_A Leucine-rich repeat pro 99.6 1.5E-15 5.2E-20 149.1 14.8 46 1-47 482-530 (876)
29 1o6v_A Internalin A; bacterial 99.6 3.5E-15 1.2E-19 137.6 16.4 237 4-295 86-341 (466)
30 3vq2_A TLR4, TOLL-like recepto 99.6 4.3E-15 1.5E-19 141.2 17.2 89 197-296 420-508 (606)
31 3bz5_A Internalin-J, INLJ; leu 99.6 1.3E-15 4.6E-20 140.0 13.1 77 3-98 59-135 (457)
32 2z66_A Variable lymphocyte rec 99.6 2.6E-15 8.9E-20 130.7 14.1 229 8-296 28-259 (306)
33 2ft3_A Biglycan; proteoglycan, 99.6 1.4E-15 4.9E-20 134.0 12.4 78 8-98 54-131 (332)
34 1ogq_A PGIP-2, polygalacturona 99.6 5.2E-15 1.8E-19 129.4 15.9 221 8-296 50-279 (313)
35 2z63_A TOLL-like receptor 4, v 99.6 1.2E-14 4E-19 137.1 18.7 43 3-46 47-89 (570)
36 2z80_A TOLL-like receptor 2, v 99.6 1.9E-15 6.3E-20 134.4 12.2 235 8-296 52-312 (353)
37 2z7x_B TOLL-like receptor 1, v 99.6 7.2E-15 2.5E-19 137.2 16.4 81 4-99 41-124 (520)
38 2ft3_A Biglycan; proteoglycan, 99.6 7.1E-15 2.4E-19 129.5 14.4 76 8-98 33-110 (332)
39 1xku_A Decorin; proteoglycan, 99.6 8.5E-15 2.9E-19 128.9 14.9 242 3-295 71-329 (330)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.3E-14 4.6E-19 136.8 17.2 83 2-99 70-155 (562)
41 3j0a_A TOLL-like receptor 5; m 99.6 2E-14 7E-19 141.8 18.4 87 1-100 66-158 (844)
42 2z7x_B TOLL-like receptor 1, v 99.6 1.2E-14 4.2E-19 135.6 15.4 84 1-100 62-148 (520)
43 2z81_A CD282 antigen, TOLL-lik 99.6 1.1E-14 3.7E-19 136.8 15.0 85 2-98 44-131 (549)
44 3zyi_A Leucine-rich repeat-con 99.6 6E-15 2.1E-19 135.5 12.5 207 1-270 92-301 (452)
45 1ozn_A Reticulon 4 receptor; N 99.6 7.6E-15 2.6E-19 126.5 12.2 80 7-98 31-113 (285)
46 1ziw_A TOLL-like receptor 3; i 99.6 2.5E-14 8.4E-19 137.9 17.0 84 3-98 44-129 (680)
47 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.8E-14 6.2E-19 135.9 15.7 78 8-98 52-129 (562)
48 2z63_A TOLL-like receptor 4, v 99.6 3.2E-14 1.1E-18 134.1 17.1 42 3-46 119-162 (570)
49 3o53_A Protein LRIM1, AGAP0063 99.6 2.3E-14 7.9E-19 125.5 14.8 217 6-298 32-250 (317)
50 3zyj_A Leucine-rich repeat-con 99.6 1.2E-14 4.1E-19 133.1 13.1 206 2-270 82-290 (440)
51 2xwt_C Thyrotropin receptor; s 99.6 5.1E-14 1.8E-18 118.1 14.7 199 9-298 32-239 (239)
52 1ziw_A TOLL-like receptor 3; i 99.6 3.2E-14 1.1E-18 137.1 13.8 86 2-99 67-154 (680)
53 4ay9_X Follicle-stimulating ho 99.5 1.6E-13 5.5E-18 121.8 14.9 221 8-294 30-255 (350)
54 1p9a_G Platelet glycoprotein I 99.5 6.8E-14 2.3E-18 121.0 12.0 201 3-270 5-206 (290)
55 3g06_A SSPH2 (leucine-rich rep 99.5 2.4E-13 8.3E-18 129.1 16.5 76 200-296 220-295 (622)
56 2z66_A Variable lymphocyte rec 99.5 6.9E-14 2.4E-18 121.7 11.6 203 4-270 48-259 (306)
57 2z81_A CD282 antigen, TOLL-lik 99.5 3.6E-14 1.2E-18 133.2 10.4 83 4-98 94-180 (549)
58 3oja_A Leucine-rich immune mol 99.5 6.2E-14 2.1E-18 129.9 11.6 216 7-298 33-250 (487)
59 1ozn_A Reticulon 4 receptor; N 99.5 7.7E-14 2.6E-18 120.1 10.4 184 2-239 50-237 (285)
60 2o6q_A Variable lymphocyte rec 99.5 1.9E-13 6.4E-18 116.9 12.1 197 9-270 17-216 (270)
61 1h6u_A Internalin H; cell adhe 99.5 9.4E-14 3.2E-18 121.1 10.1 191 5-270 38-228 (308)
62 4g8a_A TOLL-like receptor 4; l 99.5 1E-12 3.5E-17 125.1 18.1 86 200-296 468-553 (635)
63 2z80_A TOLL-like receptor 2, v 99.5 1.1E-13 3.6E-18 123.0 10.5 86 3-100 71-159 (353)
64 2o6q_A Variable lymphocyte rec 99.5 1.5E-13 5E-18 117.5 11.0 178 8-239 37-217 (270)
65 3o53_A Protein LRIM1, AGAP0063 99.5 1.8E-14 6.2E-19 126.2 4.9 78 2-99 52-129 (317)
66 2xwt_C Thyrotropin receptor; s 99.5 2.2E-13 7.7E-18 114.2 11.3 182 3-271 50-238 (239)
67 2z62_A TOLL-like receptor 4, v 99.5 2.6E-13 8.8E-18 116.3 11.8 198 8-293 28-232 (276)
68 3rfs_A Internalin B, repeat mo 99.5 6.9E-14 2.4E-18 119.7 6.8 79 4-98 37-117 (272)
69 1wwl_A Monocyte differentiatio 99.4 5.6E-14 1.9E-18 122.7 3.8 81 199-295 226-306 (312)
70 3oja_A Leucine-rich immune mol 99.4 1.4E-12 4.8E-17 120.8 12.9 217 1-293 51-270 (487)
71 1p9a_G Platelet glycoprotein I 99.4 1.4E-12 4.7E-17 112.7 11.7 175 8-239 31-207 (290)
72 3g06_A SSPH2 (leucine-rich rep 99.4 3.5E-12 1.2E-16 121.2 15.3 222 9-302 41-277 (622)
73 1h6u_A Internalin H; cell adhe 99.4 1.6E-12 5.6E-17 113.2 11.2 171 3-239 58-229 (308)
74 1jl5_A Outer protein YOPM; leu 99.4 1.9E-13 6.3E-18 125.6 5.3 229 6-295 9-267 (454)
75 2z62_A TOLL-like receptor 4, v 99.4 1.5E-12 5.1E-17 111.5 10.4 183 2-239 46-236 (276)
76 1jl5_A Outer protein YOPM; leu 99.4 3.6E-12 1.2E-16 117.0 13.0 36 8-46 131-166 (454)
77 2ast_B S-phase kinase-associat 99.4 1.7E-14 5.8E-19 127.1 -3.5 64 198-269 219-282 (336)
78 3m19_A Variable lymphocyte rec 99.4 3.1E-12 1E-16 108.1 10.1 174 9-239 15-191 (251)
79 3rfs_A Internalin B, repeat mo 99.3 3.5E-12 1.2E-16 109.1 10.3 172 3-269 58-232 (272)
80 2ast_B S-phase kinase-associat 99.3 4.1E-13 1.4E-17 118.2 3.3 227 9-295 48-282 (336)
81 3ogk_B Coronatine-insensitive 99.3 9E-13 3.1E-17 124.8 3.7 264 6-296 190-524 (592)
82 3m19_A Variable lymphocyte rec 99.3 1.1E-11 3.9E-16 104.6 9.6 174 33-270 14-190 (251)
83 4ezg_A Putative uncharacterize 99.3 8.3E-12 2.8E-16 101.5 8.3 60 6-81 42-101 (197)
84 1h6t_A Internalin B; cell adhe 99.3 7.1E-12 2.4E-16 108.3 8.2 169 4-238 42-211 (291)
85 4ay9_X Follicle-stimulating ho 99.2 1.8E-11 6.3E-16 108.4 9.6 201 3-267 49-254 (350)
86 4glp_A Monocyte differentiatio 99.2 2.4E-12 8.2E-17 112.2 2.3 221 9-296 65-305 (310)
87 2v9t_B SLIT homolog 2 protein 99.2 3.9E-11 1.3E-15 99.3 9.5 148 11-239 14-164 (220)
88 1m9s_A Internalin B; cell inva 99.2 1.7E-11 5.7E-16 116.3 7.7 170 5-239 40-209 (605)
89 1wwl_A Monocyte differentiatio 99.2 1.9E-11 6.4E-16 106.6 7.3 202 6-270 93-307 (312)
90 4g8a_A TOLL-like receptor 4; l 99.2 2.2E-10 7.4E-15 108.9 14.3 89 194-294 487-576 (635)
91 3ogk_B Coronatine-insensitive 99.2 5.1E-12 1.7E-16 119.6 2.8 93 200-296 377-474 (592)
92 1xeu_A Internalin C; cellular 99.2 4.4E-11 1.5E-15 101.8 8.0 39 197-239 146-184 (263)
93 2ca6_A RAN GTPase-activating p 99.1 4.2E-12 1.4E-16 114.0 -0.3 260 3-296 27-314 (386)
94 1m9s_A Internalin B; cell inva 99.1 1.8E-10 6.2E-15 109.2 10.6 151 3-216 60-211 (605)
95 4ezg_A Putative uncharacterize 99.1 3.7E-10 1.3E-14 91.6 11.0 83 198-295 109-191 (197)
96 2o6s_A Variable lymphocyte rec 99.1 2.8E-10 9.6E-15 93.1 9.7 39 198-238 121-159 (208)
97 2p1m_B Transport inhibitor res 99.1 3.2E-12 1.1E-16 121.0 -2.5 38 6-43 182-221 (594)
98 1h6t_A Internalin B; cell adhe 99.1 1.6E-10 5.6E-15 99.7 8.4 151 3-216 63-214 (291)
99 3e6j_A Variable lymphocyte rec 99.1 3.4E-10 1.2E-14 94.1 9.7 149 9-239 20-171 (229)
100 2xot_A Amphoterin-induced prot 99.1 1.8E-10 6E-15 102.6 7.5 40 198-239 160-201 (361)
101 4glp_A Monocyte differentiatio 99.1 1.1E-10 3.7E-15 101.7 5.9 208 7-270 90-305 (310)
102 2v70_A SLIT-2, SLIT homolog 2 99.0 7.5E-10 2.6E-14 91.5 9.7 150 10-239 13-165 (220)
103 2ca6_A RAN GTPase-activating p 99.0 4E-11 1.4E-15 107.6 1.5 215 3-270 55-314 (386)
104 1xeu_A Internalin C; cellular 99.0 2.5E-10 8.7E-15 97.0 6.2 166 6-270 17-183 (263)
105 1z7x_W Ribonuclease inhibitor; 99.0 5.4E-12 1.8E-16 115.8 -4.5 35 258-295 369-408 (461)
106 2v9t_B SLIT homolog 2 protein 99.0 1.6E-09 5.4E-14 89.5 9.9 147 36-270 14-163 (220)
107 2ell_A Acidic leucine-rich nuc 99.0 1.1E-09 3.8E-14 86.3 8.3 77 6-97 22-102 (168)
108 2p1m_B Transport inhibitor res 99.0 4.1E-11 1.4E-15 113.4 -0.5 92 200-296 371-467 (594)
109 1z7x_W Ribonuclease inhibitor; 99.0 8.2E-12 2.8E-16 114.6 -5.3 90 200-296 340-438 (461)
110 3cvr_A Invasion plasmid antige 99.0 1.9E-09 6.5E-14 101.3 10.2 69 9-98 60-128 (571)
111 2v70_A SLIT-2, SLIT homolog 2 99.0 3.2E-09 1.1E-13 87.7 10.2 148 35-270 13-164 (220)
112 3goz_A Leucine-rich repeat-con 99.0 1.4E-10 4.8E-15 103.2 1.7 83 5-99 19-118 (362)
113 2o6s_A Variable lymphocyte rec 98.9 4.3E-10 1.5E-14 92.0 3.6 80 7-98 27-108 (208)
114 2xot_A Amphoterin-induced prot 98.9 2.7E-09 9.3E-14 94.8 8.6 152 10-243 20-178 (361)
115 1a9n_A U2A', U2A'; complex (nu 98.9 2.7E-09 9.3E-14 84.8 6.8 80 3-98 14-96 (176)
116 3e6j_A Variable lymphocyte rec 98.9 3.1E-09 1.1E-13 88.3 7.2 126 8-171 40-168 (229)
117 3cvr_A Invasion plasmid antige 98.9 8.2E-09 2.8E-13 97.0 10.0 166 7-243 79-246 (571)
118 2je0_A Acidic leucine-rich nuc 98.8 1.4E-09 4.9E-14 83.9 3.9 77 6-97 15-95 (149)
119 2wfh_A SLIT homolog 2 protein 98.8 1E-08 3.6E-13 82.8 8.4 72 10-97 12-85 (193)
120 1w8a_A SLIT protein; signaling 98.8 1.1E-08 3.7E-13 82.6 8.3 73 10-97 10-85 (192)
121 3sb4_A Hypothetical leucine ri 98.8 3.8E-08 1.3E-12 86.2 12.3 69 7-88 48-144 (329)
122 2wfh_A SLIT homolog 2 protein 98.7 1.1E-08 3.7E-13 82.7 5.4 104 8-138 31-136 (193)
123 3goz_A Leucine-rich repeat-con 98.7 2.8E-09 9.5E-14 94.8 2.0 226 4-270 46-295 (362)
124 4b8c_D Glucose-repressible alc 98.7 1.1E-08 3.7E-13 99.2 6.1 108 2-138 218-326 (727)
125 1w8a_A SLIT protein; signaling 98.7 4.8E-08 1.7E-12 78.7 8.0 78 9-98 30-110 (192)
126 2o6r_A Variable lymphocyte rec 98.7 9.7E-08 3.3E-12 75.7 9.1 74 9-97 8-83 (177)
127 2je0_A Acidic leucine-rich nuc 98.6 1.1E-08 3.9E-13 78.8 2.9 84 1-98 35-121 (149)
128 2o6r_A Variable lymphocyte rec 98.6 3.7E-08 1.3E-12 78.2 5.8 80 7-98 27-108 (177)
129 1a9n_A U2A', U2A'; complex (nu 98.6 3.1E-08 1.1E-12 78.6 5.1 80 4-98 37-121 (176)
130 1ds9_A Outer arm dynein; leuci 98.6 1.1E-08 3.6E-13 83.0 1.7 76 9-98 24-101 (198)
131 2r9u_A Variable lymphocyte rec 98.6 5.3E-08 1.8E-12 77.2 5.7 79 8-98 33-113 (174)
132 2ifg_A High affinity nerve gro 98.6 5.6E-08 1.9E-12 85.7 6.1 87 1-99 25-112 (347)
133 3g39_A Variable lymphocyte rec 98.6 6.7E-08 2.3E-12 76.3 5.6 79 8-98 30-110 (170)
134 4b8c_D Glucose-repressible alc 98.6 3.3E-08 1.1E-12 95.8 4.5 84 1-98 240-324 (727)
135 2ell_A Acidic leucine-rich nuc 98.6 7.7E-08 2.6E-12 75.6 5.8 84 1-98 42-128 (168)
136 2r9u_A Variable lymphocyte rec 98.5 9.8E-08 3.4E-12 75.7 5.6 75 1-87 50-124 (174)
137 1dce_A Protein (RAB geranylger 98.5 1E-07 3.5E-12 89.7 6.3 75 9-99 442-517 (567)
138 1ds9_A Outer arm dynein; leuci 98.5 3.4E-09 1.2E-13 85.9 -3.4 83 3-100 43-125 (198)
139 1dce_A Protein (RAB geranylger 98.5 2.1E-07 7.2E-12 87.6 7.0 80 4-98 459-541 (567)
140 3g39_A Variable lymphocyte rec 98.4 2.7E-07 9.1E-12 72.8 5.6 73 1-85 47-119 (170)
141 3e4g_A ATP synthase subunit S, 98.4 1.4E-07 4.8E-12 74.3 2.6 88 202-299 62-153 (176)
142 4fdw_A Leucine rich hypothetic 98.3 5E-05 1.7E-09 68.2 18.5 74 9-97 136-210 (401)
143 3sb4_A Hypothetical leucine ri 98.2 4.4E-06 1.5E-10 72.9 9.3 40 7-49 100-139 (329)
144 4fdw_A Leucine rich hypothetic 98.1 8.9E-05 3.1E-09 66.5 15.8 76 8-98 157-234 (401)
145 2ifg_A High affinity nerve gro 97.8 1.6E-05 5.5E-10 69.8 4.9 69 2-84 50-119 (347)
146 3e4g_A ATP synthase subunit S, 97.7 3.2E-05 1.1E-09 60.8 4.1 70 198-275 82-155 (176)
147 2ra8_A Uncharacterized protein 97.7 0.00017 5.8E-09 63.7 9.3 60 30-98 136-201 (362)
148 2ra8_A Uncharacterized protein 97.6 0.00011 3.8E-09 65.0 7.5 81 4-99 135-228 (362)
149 3un9_A NLR family member X1; l 97.5 7.3E-06 2.5E-10 72.9 -2.4 63 7-81 71-139 (372)
150 3rw6_A Nuclear RNA export fact 97.4 7.2E-05 2.4E-09 63.1 3.6 79 6-96 168-257 (267)
151 4fs7_A Uncharacterized protein 97.4 0.00085 2.9E-08 59.9 10.8 34 199-235 295-328 (394)
152 4fs7_A Uncharacterized protein 97.0 0.023 7.7E-07 50.5 15.1 39 3-43 66-104 (394)
153 4gt6_A Cell surface protein; l 96.2 0.067 2.3E-06 47.4 12.5 81 198-293 285-365 (394)
154 3un9_A NLR family member X1; l 96.0 0.0016 5.6E-08 57.6 1.0 84 7-98 100-191 (372)
155 3rw6_A Nuclear RNA export fact 95.8 0.0034 1.2E-07 52.8 2.0 65 4-75 192-258 (267)
156 1io0_A Tropomodulin; LRR prote 95.6 0.0067 2.3E-07 47.9 2.9 86 4-97 32-128 (185)
157 1io0_A Tropomodulin; LRR prote 95.5 0.006 2E-07 48.2 2.5 62 30-98 33-101 (185)
158 3rfe_A Platelet glycoprotein I 95.3 0.01 3.5E-07 44.0 3.1 53 12-79 12-66 (130)
159 4gt6_A Cell surface protein; l 93.1 2.5 8.7E-05 37.0 14.3 38 4-43 133-170 (394)
160 3rfe_A Platelet glycoprotein I 92.4 0.083 2.9E-06 39.0 3.0 36 9-45 32-67 (130)
161 4h09_A Hypothetical leucine ri 85.6 2.4 8.2E-05 36.8 7.8 80 4-98 213-294 (379)
162 4h09_A Hypothetical leucine ri 81.7 1.5 5.2E-05 38.1 4.8 110 4-142 236-347 (379)
163 1pgv_A TMD-1, tropomodulin TMD 77.2 1.2 4.2E-05 35.2 2.4 68 7-82 40-112 (197)
164 1pgv_A TMD-1, tropomodulin TMD 62.9 6 0.0002 31.2 3.4 66 5-78 67-136 (197)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=2e-18 Score=152.23 Aligned_cols=228 Identities=16% Similarity=0.135 Sum_probs=137.4
Q ss_pred CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375 7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG 86 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~ 86 (311)
..++++|++++ +.++.+|+++ +++++|++|++++|.+. .+ | ..++.+++|++|+++.|.+..+|..
T Consensus 80 ~~~l~~L~L~~-n~l~~lp~~l-~~l~~L~~L~L~~n~l~-~l--p---------~~~~~l~~L~~L~Ls~n~l~~lp~~ 145 (328)
T 4fcg_A 80 QPGRVALELRS-VPLPQFPDQA-FRLSHLQHMTIDAAGLM-EL--P---------DTMQQFAGLETLTLARNPLRALPAS 145 (328)
T ss_dssp STTCCEEEEES-SCCSSCCSCG-GGGTTCSEEEEESSCCC-CC--C---------SCGGGGTTCSEEEEESCCCCCCCGG
T ss_pred ccceeEEEccC-CCchhcChhh-hhCCCCCEEECCCCCcc-ch--h---------HHHhccCCCCEEECCCCccccCcHH
Confidence 57899999999 7889999998 89999999999999998 77 7 8899999999999999999899988
Q ss_pred cc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375 87 FL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV 165 (311)
Q Consensus 87 ~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~ 165 (311)
+. +++|+.++++.+. ..+.+|..... ......+ +++++++.+ .+..+ .++.+. .....+++|+
T Consensus 146 l~~l~~L~~L~L~~n~--~~~~~p~~~~~--~~~~~~~-~~l~~L~~L---------~L~~n-~l~~lp-~~l~~l~~L~ 209 (328)
T 4fcg_A 146 IASLNRLRELSIRACP--ELTELPEPLAS--TDASGEH-QGLVNLQSL---------RLEWT-GIRSLP-ASIANLQNLK 209 (328)
T ss_dssp GGGCTTCCEEEEEEET--TCCCCCSCSEE--EC-CCCE-EESTTCCEE---------EEEEE-CCCCCC-GGGGGCTTCC
T ss_pred HhcCcCCCEEECCCCC--CccccChhHhh--ccchhhh-ccCCCCCEE---------ECcCC-CcCcch-HhhcCCCCCC
Confidence 85 8999999997533 33333321100 0000000 112223222 22221 111110 0014455566
Q ss_pred eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEe
Q 039375 166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVV 244 (311)
Q Consensus 166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~ 244 (311)
+|++++ .+... +.....+++|+.|++++| .+.. ..+..+..+++|+.|++++|+..+.+.
T Consensus 210 ~L~L~~N~l~~l-----------------~~~l~~l~~L~~L~Ls~n-~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 210 SLKIRNSPLSAL-----------------GPAIHHLPKLEELDLRGC-TALR-NYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp EEEEESSCCCCC-----------------CGGGGGCTTCCEEECTTC-TTCC-BCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred EEEccCCCCCcC-----------------chhhccCCCCCEEECcCC-cchh-hhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 666554 00000 112344566666666666 3333 234455666666666666666555442
Q ss_pred ccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEe
Q 039375 245 INDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVI 293 (311)
Q Consensus 245 ~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~ 293 (311)
.....+++|++|++++|+.+..+. .....+++|+.+.+.
T Consensus 271 --------~~~~~l~~L~~L~L~~n~~~~~iP--~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 271 --------LDIHRLTQLEKLDLRGCVNLSRLP--SLIAQLPANCIILVP 309 (328)
T ss_dssp --------TTGGGCTTCCEEECTTCTTCCCCC--GGGGGSCTTCEEECC
T ss_pred --------hhhhcCCCCCEEeCCCCCchhhcc--HHHhhccCceEEeCC
Confidence 123456666666666666666552 245556666666554
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=6.1e-18 Score=149.09 Aligned_cols=202 Identities=16% Similarity=0.213 Sum_probs=146.4
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC-
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN- 79 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~- 79 (311)
|..++++++|++|+|++ +.++.+|..+ +++++|++|++++|.+. .+ | ..++.+++|++|++++|.
T Consensus 97 p~~l~~l~~L~~L~L~~-n~l~~lp~~~-~~l~~L~~L~Ls~n~l~-~l--p---------~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDA-AGLMELPDTM-QQFAGLETLTLARNPLR-AL--P---------ASIASLNRLRELSIRACPE 162 (328)
T ss_dssp CSCGGGGTTCSEEEEES-SCCCCCCSCG-GGGTTCSEEEEESCCCC-CC--C---------GGGGGCTTCCEEEEEEETT
T ss_pred ChhhhhCCCCCEEECCC-CCccchhHHH-hccCCCCEEECCCCccc-cC--c---------HHHhcCcCCCEEECCCCCC
Confidence 56788999999999999 6788999988 99999999999999998 77 7 889999999999999854
Q ss_pred ccccccccc----------cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCC
Q 039375 80 DSILQEGFL----------ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQA 149 (311)
Q Consensus 80 ~~~lp~~~~----------l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~ 149 (311)
.+.+|..+. +++|+.++++.+.. ..+|.. + +.+++++.+.+..+ .
T Consensus 163 ~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l---~~lp~~--l----------~~l~~L~~L~L~~N---------~- 217 (328)
T 4fcg_A 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGI---RSLPAS--I----------ANLQNLKSLKIRNS---------P- 217 (328)
T ss_dssp CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC---CCCCGG--G----------GGCTTCCEEEEESS---------C-
T ss_pred ccccChhHhhccchhhhccCCCCCEEECcCCCc---CcchHh--h----------cCCCCCCEEEccCC---------C-
Confidence 777887663 88999999985432 144421 2 55556655555432 1
Q ss_pred cceecccccccccccceEEEeceEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCC
Q 039375 150 INNVEYISQSRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRL 229 (311)
Q Consensus 150 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L 229 (311)
++.+.. ....+++|+.|++++ +.... ..|.....+++|+.|++++| .+.. ..+..+..+++|
T Consensus 218 l~~l~~-~l~~l~~L~~L~Ls~----n~~~~-----------~~p~~~~~l~~L~~L~L~~n-~~~~-~~p~~~~~l~~L 279 (328)
T 4fcg_A 218 LSALGP-AIHHLPKLEELDLRG----CTALR-----------NYPPIFGGRAPLKRLILKDC-SNLL-TLPLDIHRLTQL 279 (328)
T ss_dssp CCCCCG-GGGGCTTCCEEECTT----CTTCC-----------BCCCCTTCCCCCCEEECTTC-TTCC-BCCTTGGGCTTC
T ss_pred CCcCch-hhccCCCCCEEECcC----Ccchh-----------hhHHHhcCCCCCCEEECCCC-Cchh-hcchhhhcCCCC
Confidence 221111 116788899999875 10000 11334567889999999999 4444 345678899999
Q ss_pred CEEeeccCcCceEEeccCCcccccccccccccceeecc
Q 039375 230 VTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILC 267 (311)
Q Consensus 230 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~ 267 (311)
++|++++|+.++.++ .....+++|+.+.+.
T Consensus 280 ~~L~L~~n~~~~~iP--------~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLP--------SLIAQLPANCIILVP 309 (328)
T ss_dssp CEEECTTCTTCCCCC--------GGGGGSCTTCEEECC
T ss_pred CEEeCCCCCchhhcc--------HHHhhccCceEEeCC
Confidence 999999999888773 334566666666655
No 3
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=2.5e-17 Score=148.48 Aligned_cols=89 Identities=17% Similarity=0.102 Sum_probs=53.4
Q ss_pred CCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccc
Q 039375 194 PSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLT 273 (311)
Q Consensus 194 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~ 273 (311)
..+...+++|+.|++++| ++++ ..+..+..+++|+.|++++|. +..+.. ....+++|++|.++++ .++
T Consensus 241 ~~~l~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~L~L~~n-~l~ 308 (390)
T 3o6n_A 241 TAWLLNYPGLVEVDLSYN-ELEK-IMYHPFVKMQRLERLYISNNR-LVALNL--------YGQPIPTLKVLDLSHN-HLL 308 (390)
T ss_dssp CGGGGGCTTCSEEECCSS-CCCE-EESGGGTTCSSCCEEECCSSC-CCEEEC--------SSSCCTTCCEEECCSS-CCC
T ss_pred cHHHcCCCCccEEECCCC-cCCC-cChhHccccccCCEEECCCCc-CcccCc--------ccCCCCCCCEEECCCC-cce
Confidence 334556778888888888 6776 445666777888888887664 333321 1134666777777665 344
Q ss_pred eeccCCceecCCCccEEEEecCC
Q 039375 274 SFCSANYTFKFPSLEYLEVIGCP 296 (311)
Q Consensus 274 ~~~~~~~~~~~~~L~~L~i~~c~ 296 (311)
.+.. ....+++|++|++.+|+
T Consensus 309 ~~~~--~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 309 HVER--NQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CCGG--GHHHHTTCSEEECCSSC
T ss_pred ecCc--cccccCcCCEEECCCCc
Confidence 4422 23445666666666553
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.73 E-value=3.8e-17 Score=151.10 Aligned_cols=256 Identities=18% Similarity=0.125 Sum_probs=139.3
Q ss_pred CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
..+.++++|++|+|++ +.++.+++..++++++|++|++++|.+. .+. + ..++.+++|++|+++.|.+.
T Consensus 50 ~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~-~---------~~~~~l~~L~~L~Ls~n~i~ 117 (477)
T 2id5_A 50 DEFASFPHLEELELNE-NIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIP-L---------GVFTGLSNLTKLDISENKIV 117 (477)
T ss_dssp TTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCC-SCC-T---------TSSTTCTTCCEEECTTSCCC
T ss_pred hHccCCCCCCEEECCC-CccCEeChhhhhCCccCCEEECCCCcCC-ccC-c---------ccccCCCCCCEEECCCCccc
Confidence 4567778888888888 5666663333377888888888887776 441 1 33566777777777776665
Q ss_pred cccc-ccc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc---------------eeeEEc
Q 039375 82 ILQE-GFL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD---------------FTDICS 144 (311)
Q Consensus 82 ~lp~-~~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------------l~~L~l 144 (311)
.++. .+. +++|+.++++.+... ...+. .+ .++++++.+.+..+ ++.|.+
T Consensus 118 ~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~--~~----------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 118 ILLDYMFQDLYNLKSLEVGDNDLV--YISHR--AF----------SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCC--EECTT--SS----------TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred cCChhHccccccCCEEECCCCccc--eeChh--hc----------cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 5543 332 667777766532211 10000 01 23334444444332 333443
Q ss_pred cccCCcceecccccccccccceEEEec--eEecccccccCcccccccEEeC------C-CCcccccCccEEEEecCCCce
Q 039375 145 MKLQAINNVEYISQSRITLTVSLFIRR--GIFNGRMLRETFEEVGNDKILL------P-SSSVSFRNLTKLVAVGCKELI 215 (311)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~~~~~~~~l~~L~~~~------~-~~~~~l~~L~~L~l~~~~~l~ 215 (311)
..+. ++.........+++|+.|++++ .....+........+..|.+.+ + .....+++|+.|++++| .++
T Consensus 184 ~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~ 261 (477)
T 2id5_A 184 RHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PIS 261 (477)
T ss_dssp ESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCC
T ss_pred CCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC-cCC
Confidence 3221 2221111114566778888765 0111111111111344444333 1 12345678888888888 677
Q ss_pred eecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecC
Q 039375 216 HLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC 295 (311)
Q Consensus 216 ~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c 295 (311)
. .+...+..+++|+.|++++|. +..+.. .....+++|++|+++++ .++.+... .+..+++|++|++.++
T Consensus 262 ~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 262 T-IEGSMLHELLRLQEIQLVGGQ-LAVVEP-------YAFRGLNYLRVLNVSGN-QLTTLEES-VFHSVGNLETLILDSN 330 (477)
T ss_dssp E-ECTTSCTTCTTCCEEECCSSC-CSEECT-------TTBTTCTTCCEEECCSS-CCSCCCGG-GBSCGGGCCEEECCSS
T ss_pred c-cChhhccccccCCEEECCCCc-cceECH-------HHhcCcccCCEEECCCC-cCceeCHh-HcCCCcccCEEEccCC
Confidence 6 455667778888888888764 333322 12346778888888876 45555321 2345778888888765
Q ss_pred C
Q 039375 296 P 296 (311)
Q Consensus 296 ~ 296 (311)
+
T Consensus 331 ~ 331 (477)
T 2id5_A 331 P 331 (477)
T ss_dssp C
T ss_pred C
Confidence 3
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=3e-17 Score=156.12 Aligned_cols=249 Identities=17% Similarity=0.151 Sum_probs=118.8
Q ss_pred CCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375 5 GQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ 84 (311)
Q Consensus 5 ~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp 84 (311)
+.+++|++|+|++ +.++.+|+..++.+++|++|++++|.+.... | ..++.+++|++|++++|.+..+|
T Consensus 72 ~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~---------~~~~~l~~L~~L~L~~n~l~~l~ 139 (597)
T 3oja_B 72 DSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP--P---------HVFQNVPLLTVLVLERNDLSSLP 139 (597)
T ss_dssp HHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCCCC--T---------TTTTTCTTCCEEECCSSCCCCCC
T ss_pred ccCCCCcEEECCC-CCCCCCChHHhcCCCCCCEEECCCCcCCCCC--H---------HHHcCCCCCCEEEeeCCCCCCCC
Confidence 3455555555555 3445444322255555555555555554222 2 34455666666666666655555
Q ss_pred ccc--ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc-eeeEEccccCCcceeccccc---
Q 039375 85 EGF--LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD-FTDICSMKLQAINNVEYISQ--- 158 (311)
Q Consensus 85 ~~~--~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-l~~L~l~~~~~~~~~~~~~~--- 158 (311)
..+ .+++|+.++++.+. +.+..|. .+ +.+++++.+.+.++ +..+.+..+++++.+....+
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~--l~~~~~~--~~----------~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNN--LERIEDD--TF----------QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp TTTTTTCTTCCEEECCSSC--CCBCCTT--TT----------TTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCS
T ss_pred HHHhccCCCCCEEEeeCCc--CCCCChh--hh----------hcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccc
Confidence 543 25566666554221 1111110 01 34455555555443 22222333333332222211
Q ss_pred --ccccccceEEEec-eEecccccccCcccccccEE-----eCCCCcccccCccEEEEecCCCceeecCccccccCCCCC
Q 039375 159 --SRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKI-----LLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLV 230 (311)
Q Consensus 159 --~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~-----~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~ 230 (311)
...+.|+.|++++ .+...+. ..+..+..|.+ .++.+...+++|+.|++++| .+++ ..+..+..+++|+
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~ 281 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEK-IMYHPFVKMQRLE 281 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCE-EESGGGTTCSSCC
T ss_pred cccCCchhheeeccCCccccccc--ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC-ccCC-CCHHHhcCccCCC
Confidence 1222344555443 1111100 01112333332 23455667788888888888 7776 4456677788888
Q ss_pred EEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecC
Q 039375 231 TVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC 295 (311)
Q Consensus 231 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c 295 (311)
.|++++|. +..+... ...+++|+.|.++++. +..+.. ....+++|++|++++|
T Consensus 282 ~L~Ls~N~-l~~l~~~--------~~~l~~L~~L~Ls~N~-l~~i~~--~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 282 RLYISNNR-LVALNLY--------GQPIPTLKVLDLSHNH-LLHVER--NQPQFDRLENLYLDHN 334 (597)
T ss_dssp EEECTTSC-CCEEECS--------SSCCTTCCEEECCSSC-CCCCGG--GHHHHTTCSEEECCSS
T ss_pred EEECCCCC-CCCCCcc--------cccCCCCcEEECCCCC-CCccCc--ccccCCCCCEEECCCC
Confidence 88888764 3333221 1345666666666653 344422 2334555555555554
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.72 E-value=9.4e-17 Score=144.68 Aligned_cols=249 Identities=15% Similarity=0.196 Sum_probs=145.4
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL 83 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l 83 (311)
+..+++|++|++++ +.++.+++..++.+++|++|++++|.+.... | ..++.+++|++|+++.|.+..+
T Consensus 65 ~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~---------~~~~~l~~L~~L~L~~n~l~~l 132 (390)
T 3o6n_A 65 LDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP--P---------HVFQNVPLLTVLVLERNDLSSL 132 (390)
T ss_dssp HHHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCCCC--T---------TTTTTCTTCCEEECCSSCCCCC
T ss_pred hcccccCcEEECCC-CcccccChhhccCCCCcCEEECCCCCCCcCC--H---------HHhcCCCCCCEEECCCCccCcC
Confidence 45677788888887 5677676533477888888888887776322 3 4567777777777777777777
Q ss_pred cccc--ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc-eeeEEccccCCcceeccccc--
Q 039375 84 QEGF--LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD-FTDICSMKLQAINNVEYISQ-- 158 (311)
Q Consensus 84 p~~~--~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-l~~L~l~~~~~~~~~~~~~~-- 158 (311)
|..+ .+++|+.++++.+. +....|. .+ ..+++++.+.+..+ +..+.+..++.++.+....+
T Consensus 133 ~~~~~~~l~~L~~L~L~~n~--l~~~~~~--~~----------~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 133 PRGIFHNTPKLTTLSMSNNN--LERIEDD--TF----------QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSC--CCBCCTT--TT----------SSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred CHHHhcCCCCCcEEECCCCc--cCccChh--hc----------cCCCCCCEEECCCCcCCccccccccccceeecccccc
Confidence 7654 26777777765322 1111110 01 33344444444432 22222222222221111100
Q ss_pred ------------------------ccccccceEEEec-eEecccccccCcccccccEEeC-------CCCcccccCccEE
Q 039375 159 ------------------------SRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILL-------PSSSVSFRNLTKL 206 (311)
Q Consensus 159 ------------------------~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~-------~~~~~~l~~L~~L 206 (311)
...++|+.|++++ .+.... .......+..+.+++ +.....+++|+.|
T Consensus 199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 1223455555554 111111 111112344444332 4445678999999
Q ss_pred EEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCC
Q 039375 207 VAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPS 286 (311)
Q Consensus 207 ~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~ 286 (311)
++++| +++.+ +.....+++|+.|++++|. +..+ +.....+++|++|.+.+++ ++.+ ....+++
T Consensus 278 ~L~~n-~l~~~--~~~~~~l~~L~~L~L~~n~-l~~~--------~~~~~~l~~L~~L~L~~N~-i~~~----~~~~~~~ 340 (390)
T 3o6n_A 278 YISNN-RLVAL--NLYGQPIPTLKVLDLSHNH-LLHV--------ERNQPQFDRLENLYLDHNS-IVTL----KLSTHHT 340 (390)
T ss_dssp ECCSS-CCCEE--ECSSSCCTTCCEEECCSSC-CCCC--------GGGHHHHTTCSEEECCSSC-CCCC----CCCTTCC
T ss_pred ECCCC-cCccc--CcccCCCCCCCEEECCCCc-ceec--------CccccccCcCCEEECCCCc-ccee----Cchhhcc
Confidence 99999 88874 3445779999999999885 4443 2223568999999999875 5655 2457899
Q ss_pred ccEEEEecCC
Q 039375 287 LEYLEVIGCP 296 (311)
Q Consensus 287 L~~L~i~~c~ 296 (311)
|++|++.+++
T Consensus 341 L~~L~l~~N~ 350 (390)
T 3o6n_A 341 LKNLTLSHND 350 (390)
T ss_dssp CSEEECCSSC
T ss_pred CCEEEcCCCC
Confidence 9999998863
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=2.4e-16 Score=144.68 Aligned_cols=86 Identities=19% Similarity=0.123 Sum_probs=47.8
Q ss_pred CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
..++++++|++|++++|.....++++.++++++|++|++++|.+.... | ..++.+++|++|++++|.+.
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~--~---------~~~~~l~~L~~L~L~~n~l~ 116 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE--T---------GAFNGLANLEVLTLTQCNLD 116 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC--T---------TTTTTCTTCCEEECTTSCCB
T ss_pred hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC--h---------hhccCcccCCEEeCCCCCCC
Confidence 456667777777777743323554443467777777777777665333 4 45555566666666555543
Q ss_pred c-cccc--cc-cccCcEEEEE
Q 039375 82 I-LQEG--FL-ARKLERFKIS 98 (311)
Q Consensus 82 ~-lp~~--~~-l~~L~~l~~~ 98 (311)
. +|.. +. +++|+.++++
T Consensus 117 ~~~~~~~~~~~l~~L~~L~L~ 137 (455)
T 3v47_A 117 GAVLSGNFFKPLTSLEMLVLR 137 (455)
T ss_dssp THHHHSSTTTTCTTCCEEECC
T ss_pred ccccCcccccCcccCCEEECC
Confidence 2 2221 22 5555555554
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.71 E-value=4.7e-17 Score=155.81 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=69.9
Q ss_pred CCccCCCCCccEEecCCCCCCcc------------------cChhHHH--hccccceEEeccccceeeeecccccccccc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKV------------------IAPNVIS--SLIRLEELCMGNCSVEWEVERANTERSNAS 60 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~------------------lp~~i~~--~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~ 60 (311)
|..++++++|++|+|++ +.++. +|.++ + ++++|++|++++|.+.+.+ |
T Consensus 199 p~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~--p-------- 266 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGN-SPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKL--P-------- 266 (636)
T ss_dssp CGGGGGCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSC--C--------
T ss_pred CHHHhcccCCCEEECcC-CccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccC--h--------
Confidence 56788899999999999 55776 88887 8 8999999999999887777 7
Q ss_pred ccccCCCCCccEEEEeecC-cc--ccccccc-c------ccCcEEEEEe
Q 039375 61 LDELMLLPWLTTLEIDVKN-DS--ILQEGFL-A------RKLERFKISI 99 (311)
Q Consensus 61 l~~l~~L~~L~~L~l~~~~-~~--~lp~~~~-l------~~L~~l~~~~ 99 (311)
..++.+++|++|+++.|. .. .+|..+. + ++|+.++++.
T Consensus 267 -~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 267 -TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp -TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred -HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 888888899999998886 65 4777664 4 7888888753
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.71 E-value=8e-17 Score=140.99 Aligned_cols=231 Identities=13% Similarity=0.074 Sum_probs=119.3
Q ss_pred CccCCCCCccEEecCCCCCCc-ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 2 KALGQVTKLRLLDLRDCFHLK-VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 2 ~~i~~L~~L~~L~L~~c~~l~-~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
..++++++|++|++++++.+. .+|..+ +++++|++|++++|.+...+ | ..++.+++|++|+++.|.+
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~--p---------~~~~~l~~L~~L~Ls~N~l 137 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAI--P---------DFLSQIKTLVTLDFSYNAL 137 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEEC--C---------GGGGGCTTCCEEECCSSEE
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcC--C---------HHHhCCCCCCEEeCCCCcc
Confidence 345556666666666323333 455554 66666666666666655444 4 5555666666666665554
Q ss_pred c-ccccccc-cccCcEEEEEecCccccccccccccccccccccccccccc-ccccccccCceeeEEccccCCcceecccc
Q 039375 81 S-ILQEGFL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHE-RLRELKLKPDFTDICSMKLQAINNVEYIS 157 (311)
Q Consensus 81 ~-~lp~~~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~l~~L~l~~~~~~~~~~~~~ 157 (311)
. .+|..+. +++|+.++++.+ .+.+.+|.. + ..+. .++.+.+..+ . ++......
T Consensus 138 ~~~~p~~~~~l~~L~~L~L~~N--~l~~~~p~~--l----------~~l~~~L~~L~L~~N---------~-l~~~~~~~ 193 (313)
T 1ogq_A 138 SGTLPPSISSLPNLVGITFDGN--RISGAIPDS--Y----------GSFSKLFTSMTISRN---------R-LTGKIPPT 193 (313)
T ss_dssp ESCCCGGGGGCTTCCEEECCSS--CCEEECCGG--G----------GCCCTTCCEEECCSS---------E-EEEECCGG
T ss_pred CCcCChHHhcCCCCCeEECcCC--cccCcCCHH--H----------hhhhhcCcEEECcCC---------e-eeccCChH
Confidence 4 4555443 556666655422 122222211 1 2222 3333333322 1 11111111
Q ss_pred cccccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeecc
Q 039375 158 QSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYG 236 (311)
Q Consensus 158 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~ 236 (311)
...+. |+.|++++ .+... .+.....+++|+.|++++| +++. ..+ .+..+++|++|++++
T Consensus 194 ~~~l~-L~~L~Ls~N~l~~~----------------~~~~~~~l~~L~~L~L~~N-~l~~-~~~-~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 194 FANLN-LAFVDLSRNMLEGD----------------ASVLFGSDKNTQKIHLAKN-SLAF-DLG-KVGLSKNLNGLDLRN 253 (313)
T ss_dssp GGGCC-CSEEECCSSEEEEC----------------CGGGCCTTSCCSEEECCSS-EECC-BGG-GCCCCTTCCEEECCS
T ss_pred HhCCc-ccEEECcCCcccCc----------------CCHHHhcCCCCCEEECCCC-ceee-ecC-cccccCCCCEEECcC
Confidence 13343 77888765 12111 1122445677888888877 5654 222 256677888888887
Q ss_pred CcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCCCCe
Q 039375 237 CRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMK 299 (311)
Q Consensus 237 c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~ 299 (311)
|...+.+ +.....+++|++|+++++. +....+ ....+++|+.+++.+++.+.
T Consensus 254 N~l~~~~--------p~~l~~l~~L~~L~Ls~N~-l~~~ip--~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 254 NRIYGTL--------PQGLTQLKFLHSLNVSFNN-LCGEIP--QGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp SCCEECC--------CGGGGGCTTCCEEECCSSE-EEEECC--CSTTGGGSCGGGTCSSSEEE
T ss_pred CcccCcC--------ChHHhcCcCCCEEECcCCc-ccccCC--CCccccccChHHhcCCCCcc
Confidence 6643333 2223567778888887764 442222 12567777777777776555
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.69 E-value=4.9e-16 Score=151.89 Aligned_cols=91 Identities=9% Similarity=-0.093 Sum_probs=67.6
Q ss_pred CCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccc
Q 039375 194 PSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLT 273 (311)
Q Consensus 194 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~ 273 (311)
|.....+++|+.|++++| +++. ..+..++.+++|+.|++++|...+.+ |...+.+++|++|+++++.--.
T Consensus 625 ~~~~~~l~~L~~LdLs~N-~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~i--------p~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYN-MLSG-YIPKEIGSMPYLFILNLGHNDISGSI--------PDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp CCSCSSSBCCCEEECCSS-CCBS-CCCGGGGGCTTCCEEECCSSCCCSCC--------CGGGGGCTTCCEEECCSSCCEE
T ss_pred chhhhccccccEEECcCC-cccc-cCCHHHhccccCCEEeCcCCccCCCC--------ChHHhCCCCCCEEECCCCcccC
Confidence 444566788999999999 7887 56677889999999999988765555 3344678888999998875322
Q ss_pred eeccCCceecCCCccEEEEecCC
Q 039375 274 SFCSANYTFKFPSLEYLEVIGCP 296 (311)
Q Consensus 274 ~~~~~~~~~~~~~L~~L~i~~c~ 296 (311)
.+ +.....+++|++|++++++
T Consensus 695 ~i--p~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 695 RI--PQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CC--CGGGGGCCCCSEEECCSSE
T ss_pred cC--ChHHhCCCCCCEEECcCCc
Confidence 44 2245678889999998874
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=2.3e-16 Score=149.98 Aligned_cols=243 Identities=14% Similarity=0.143 Sum_probs=158.5
Q ss_pred CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccc-cCCCCCccEEEEeecCc
Q 039375 2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDE-LMLLPWLTTLEIDVKND 80 (311)
Q Consensus 2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~-l~~L~~L~~L~l~~~~~ 80 (311)
..++.+++|++|+|++ +.++.+|+..++.+++|++|++++|.+. .+ | .. ++.+++|++|++++|.+
T Consensus 93 ~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l--~---------~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 93 YAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLS-SL--P---------RGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-CC--C---------TTTTTTCTTCCEEECCSSCC
T ss_pred HHhcCCCCCCEEECCC-CcCCCCCHHHHcCCCCCCEEEeeCCCCC-CC--C---------HHHhccCCCCCEEEeeCCcC
Confidence 4788999999999999 6788887776699999999999999987 55 3 44 58899999999999988
Q ss_pred cccccc-cc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc----------eeeEEccccC
Q 039375 81 SILQEG-FL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD----------FTDICSMKLQ 148 (311)
Q Consensus 81 ~~lp~~-~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----------l~~L~l~~~~ 148 (311)
..++.. +. +++|+.++++.+. +.+ ++ . +.++.++.+.+..+ ++.|.+..+.
T Consensus 160 ~~~~~~~~~~l~~L~~L~L~~N~--l~~-~~----~----------~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~ 222 (597)
T 3oja_B 160 ERIEDDTFQATTSLQNLQLSSNR--LTH-VD----L----------SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS 222 (597)
T ss_dssp CBCCTTTTTTCTTCCEEECTTSC--CSB-CC----G----------GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSC
T ss_pred CCCChhhhhcCCcCcEEECcCCC--CCC-cC----h----------hhhhhhhhhhcccCccccccCCchhheeeccCCc
Confidence 777653 43 8899999886332 111 11 1 23333444433332 3444444321
Q ss_pred CcceecccccccccccceEEEec-eEecccccccCcccccccEEeC-------CCCcccccCccEEEEecCCCceeecCc
Q 039375 149 AINNVEYISQSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILL-------PSSSVSFRNLTKLVAVGCKELIHLVTS 220 (311)
Q Consensus 149 ~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~-------~~~~~~l~~L~~L~l~~~~~l~~l~~~ 220 (311)
++.+.. ...++|+.|++++ .+... ........|..|.+++ |..+..+++|+.|++++| +++.+ +
T Consensus 223 -l~~~~~---~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l--~ 294 (597)
T 3oja_B 223 -INVVRG---PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVAL--N 294 (597)
T ss_dssp -CCEEEC---SCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEE--E
T ss_pred -cccccc---ccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCC--C
Confidence 211111 2234566666655 11111 1111112333333222 445667899999999999 88874 3
Q ss_pred cccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCC
Q 039375 221 STAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCP 296 (311)
Q Consensus 221 ~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 296 (311)
.....+++|+.|++++|.. ..+ +.....+++|+.|.+.++. +..+ ....+++|++|++++++
T Consensus 295 ~~~~~l~~L~~L~Ls~N~l-~~i--------~~~~~~l~~L~~L~L~~N~-l~~~----~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 295 LYGQPIPTLKVLDLSHNHL-LHV--------ERNQPQFDRLENLYLDHNS-IVTL----KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CSSSCCTTCCEEECCSSCC-CCC--------GGGHHHHTTCSEEECCSSC-CCCC----CCCTTCCCSEEECCSSC
T ss_pred cccccCCCCcEEECCCCCC-Ccc--------CcccccCCCCCEEECCCCC-CCCc----ChhhcCCCCEEEeeCCC
Confidence 4557799999999998764 333 2233568999999999875 5555 24578999999998864
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.69 E-value=1.3e-15 Score=140.74 Aligned_cols=249 Identities=19% Similarity=0.154 Sum_probs=161.9
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF 87 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~ 87 (311)
.++++|+|++ +.++.+++..+.++++|++|++++|.+.... | ..++.+++|++|+++.|.+..+|...
T Consensus 32 ~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~---------~~~~~l~~L~~L~L~~n~l~~~~~~~ 99 (477)
T 2id5_A 32 TETRLLDLGK-NRIKTLNQDEFASFPHLEELELNENIVSAVE--P---------GAFNNLFNLRTLGLRSNRLKLIPLGV 99 (477)
T ss_dssp TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECTTSCCCEEC--T---------TTTTTCTTCCEEECCSSCCCSCCTTS
T ss_pred CCCcEEECCC-CccceECHhHccCCCCCCEEECCCCccCEeC--h---------hhhhCCccCCEEECCCCcCCccCccc
Confidence 5899999999 7888886544599999999999999987443 5 78899999999999999999998764
Q ss_pred --ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc---------------eeeEEccccCCc
Q 039375 88 --LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD---------------FTDICSMKLQAI 150 (311)
Q Consensus 88 --~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------------l~~L~l~~~~~~ 150 (311)
.+++|+.++++.+. +....|. .+ .++++++.+.+..+ ++.|.+..+ .+
T Consensus 100 ~~~l~~L~~L~Ls~n~--i~~~~~~--~~----------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l 164 (477)
T 2id5_A 100 FTGLSNLTKLDISENK--IVILLDY--MF----------QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NL 164 (477)
T ss_dssp STTCTTCCEEECTTSC--CCEECTT--TT----------TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CC
T ss_pred ccCCCCCCEEECCCCc--cccCChh--Hc----------cccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cC
Confidence 38999999886332 2111111 11 45566666666543 344444332 12
Q ss_pred ceecccccccccccceEEEec-eEecccc-cccCcccccccEEeC-------CCCcccccCccEEEEecCCCceeecCcc
Q 039375 151 NNVEYISQSRITLTVSLFIRR-GIFNGRM-LRETFEEVGNDKILL-------PSSSVSFRNLTKLVAVGCKELIHLVTSS 221 (311)
Q Consensus 151 ~~~~~~~~~~~~~L~~L~l~~-~~~~~~~-~~~~~~~l~~L~~~~-------~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 221 (311)
+.+.......+++|+.|++.+ .+..... .......+..+.+.+ +.......+|+.|++++| +++. .+..
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~-~~~~ 242 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTA-VPYL 242 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCS-CCHH
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccc-cCHH
Confidence 111110014566777777765 1111111 111112344444433 222233448899999988 7876 5556
Q ss_pred ccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecC
Q 039375 222 TAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC 295 (311)
Q Consensus 222 ~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c 295 (311)
.+..+++|+.|++++|. +..+... ....+++|++|.+.++. +..+.+ ..+..+++|++|+++++
T Consensus 243 ~~~~l~~L~~L~Ls~n~-l~~~~~~-------~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNP-ISTIEGS-------MLHELLRLQEIQLVGGQ-LAVVEP-YAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp HHTTCTTCCEEECCSSC-CCEECTT-------SCTTCTTCCEEECCSSC-CSEECT-TTBTTCTTCCEEECCSS
T ss_pred HhcCccccCeeECCCCc-CCccChh-------hccccccCCEEECCCCc-cceECH-HHhcCcccCCEEECCCC
Confidence 67889999999999776 4444321 22567899999999874 566532 24557899999999887
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=5e-16 Score=142.71 Aligned_cols=224 Identities=17% Similarity=0.151 Sum_probs=153.1
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF 87 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~ 87 (311)
.+|++|+|++ +.++.++++.++++++|++|++++|.+. .+. | ..+..+++|++|+++.|.+..+|...
T Consensus 75 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~-~---------~~~~~l~~L~~L~L~~n~l~~~~~~~ 142 (452)
T 3zyi_A 75 SNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSIR-QIE-V---------GAFNGLASLNTLELFDNWLTVIPSGA 142 (452)
T ss_dssp TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCC-EEC-T---------TTTTTCTTCCEEECCSSCCSBCCTTT
T ss_pred CCccEEECcC-CcCceECHHHcCCCCCCCEEECCCCccC-CcC-h---------hhccCcccCCEEECCCCcCCccChhh
Confidence 5899999999 7888785554599999999999999987 442 4 67888999999999999988888764
Q ss_pred -c-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375 88 -L-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV 165 (311)
Q Consensus 88 -~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~ 165 (311)
. +++|+.++++.+.. ..+|.. .+ .+++++ +.|.+..+..++.+.......+++|+
T Consensus 143 ~~~l~~L~~L~L~~N~l---~~~~~~-~~----------~~l~~L---------~~L~l~~~~~l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPI---ESIPSY-AF----------NRVPSL---------MRLDLGELKKLEYISEGAFEGLFNLK 199 (452)
T ss_dssp SSSCTTCCEEECCSCCC---CEECTT-TT----------TTCTTC---------CEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred hcccCCCCEEECCCCCc---ceeCHh-HH----------hcCCcc---------cEEeCCCCCCccccChhhccCCCCCC
Confidence 3 88999998863321 111100 01 333433 45555555555554322225677888
Q ss_pred eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEe
Q 039375 166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVV 244 (311)
Q Consensus 166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~ 244 (311)
.|++++ .+... .....+++|+.|++++| ++++ ..+..+..+++|+.|++++|. +..+.
T Consensus 200 ~L~L~~n~l~~~------------------~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~ 258 (452)
T 3zyi_A 200 YLNLGMCNIKDM------------------PNLTPLVGLEELEMSGN-HFPE-IRPGSFHGLSSLKKLWVMNSQ-VSLIE 258 (452)
T ss_dssp EEECTTSCCSSC------------------CCCTTCTTCCEEECTTS-CCSE-ECGGGGTTCTTCCEEECTTSC-CCEEC
T ss_pred EEECCCCccccc------------------ccccccccccEEECcCC-cCcc-cCcccccCccCCCEEEeCCCc-CceEC
Confidence 888876 11111 11445778999999998 7887 556778889999999998765 34432
Q ss_pred ccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCC
Q 039375 245 INDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCP 296 (311)
Q Consensus 245 ~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 296 (311)
. .....+++|++|++.++ +++.+... ....+++|++|++.+++
T Consensus 259 ~-------~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 259 R-------NAFDGLASLVELNLAHN-NLSSLPHD-LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp T-------TTTTTCTTCCEEECCSS-CCSCCCTT-SSTTCTTCCEEECCSSC
T ss_pred H-------HHhcCCCCCCEEECCCC-cCCccChH-HhccccCCCEEEccCCC
Confidence 2 12356788899999887 46665321 23467888999887754
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=1.6e-16 Score=156.01 Aligned_cols=85 Identities=25% Similarity=0.333 Sum_probs=62.7
Q ss_pred CCccCCCCCccEEecCCCCCCcc------------------cChhHHH--hccccceEEeccccceeeeecccccccccc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKV------------------IAPNVIS--SLIRLEELCMGNCSVEWEVERANTERSNAS 60 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~------------------lp~~i~~--~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~ 60 (311)
|..+++|++|++|+|++ +.++. +|+++ + ++++|++|++++|.+.+.+ |
T Consensus 441 P~~l~~L~~L~~L~Ls~-N~Lsg~~i~~~~~~~s~n~~~g~iP~~l-~f~~L~~L~~L~Ls~N~l~~~i--P-------- 508 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFAN-SPFTYDNIAVDWEDANSDYAKQYENEEL-SWSNLKDLTDVELYNCPNMTQL--P-------- 508 (876)
T ss_dssp CGGGGGCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEESCTTCCSC--C--------
T ss_pred hHHHhcCCCCCEEECcC-CcCCCCcccccccccccccccccCChhh-hhccCCCCCEEECcCCCCCccC--h--------
Confidence 56678888888888888 55665 78776 6 8888888888888876666 6
Q ss_pred ccccCCCCCccEEEEeecC-cc--ccccccc-cc-------cCcEEEEE
Q 039375 61 LDELMLLPWLTTLEIDVKN-DS--ILQEGFL-AR-------KLERFKIS 98 (311)
Q Consensus 61 l~~l~~L~~L~~L~l~~~~-~~--~lp~~~~-l~-------~L~~l~~~ 98 (311)
..++.+++|+.|+++.|. .. .+|..+. +. +|+.++++
T Consensus 509 -~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 509 -DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp -GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred -HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence 777788888888887775 54 3666553 33 77777765
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.68 E-value=5.4e-16 Score=137.38 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=47.1
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL 83 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l 83 (311)
++.+++|++|++++ +.++.+|+ + +++++|++|++++|.+. .+ ..++.+++|++|+++++.+..+
T Consensus 62 ~~~~~~L~~L~l~~-n~i~~~~~-~-~~l~~L~~L~L~~n~i~-~~------------~~~~~l~~L~~L~l~~n~i~~~ 125 (347)
T 4fmz_A 62 IEYLTNLEYLNLNG-NQITDISP-L-SNLVKLTNLYIGTNKIT-DI------------SALQNLTNLRELYLNEDNISDI 125 (347)
T ss_dssp GGGCTTCCEEECCS-SCCCCCGG-G-TTCTTCCEEECCSSCCC-CC------------GGGTTCTTCSEEECTTSCCCCC
T ss_pred hhhcCCccEEEccC-Cccccchh-h-hcCCcCCEEEccCCccc-Cc------------hHHcCCCcCCEEECcCCcccCc
Confidence 45566666666666 35555555 3 66666666666666554 33 4456666666666666666665
Q ss_pred ccccccccCcEEEEE
Q 039375 84 QEGFLARKLERFKIS 98 (311)
Q Consensus 84 p~~~~l~~L~~l~~~ 98 (311)
+....+++|+.++++
T Consensus 126 ~~~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 126 SPLANLTKMYSLNLG 140 (347)
T ss_dssp GGGTTCTTCCEEECT
T ss_pred hhhccCCceeEEECC
Confidence 553336666666554
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.68 E-value=9.9e-16 Score=145.66 Aligned_cols=86 Identities=17% Similarity=0.172 Sum_probs=58.1
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
|..++++++|++|++++ +.+..++++.++++++|++|++++|.+.... | ..++.+++|++|++++|.+
T Consensus 50 ~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~---------~~~~~l~~L~~L~L~~n~i 117 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTR-CQIYWIHEDTFQSQHRLDTLVLTANPLIFMA--E---------TALSGPKALKHLFFIQTGI 117 (606)
T ss_dssp TTTSTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCSEEC--T---------TTTSSCTTCCEEECTTSCC
T ss_pred hhHhccCccceEEECCC-CccceeChhhccCccccCeeeCCCCcccccC--h---------hhhcccccccEeeccccCc
Confidence 34677888888888888 5666664333388888888888888876333 4 5666777777777776666
Q ss_pred cccc-cccc-cccCcEEEEE
Q 039375 81 SILQ-EGFL-ARKLERFKIS 98 (311)
Q Consensus 81 ~~lp-~~~~-l~~L~~l~~~ 98 (311)
..++ ..+. +++|+.++++
T Consensus 118 ~~l~~~~~~~l~~L~~L~L~ 137 (606)
T 3t6q_A 118 SSIDFIPLHNQKTLESLYLG 137 (606)
T ss_dssp SCGGGSCCTTCTTCCEEECC
T ss_pred ccCCcchhccCCcccEEECC
Confidence 6553 3332 6666666664
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.67 E-value=5e-16 Score=137.57 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=59.5
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC-ccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN-DSI 82 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~-~~~ 82 (311)
++.+++|++|++++ +.++.+|. + +++++|++|++++|.+. .+ ..+..+++|+.|+++.+. ...
T Consensus 84 ~~~l~~L~~L~L~~-n~i~~~~~-~-~~l~~L~~L~l~~n~i~-~~------------~~~~~l~~L~~L~l~~n~~~~~ 147 (347)
T 4fmz_A 84 LSNLVKLTNLYIGT-NKITDISA-L-QNLTNLRELYLNEDNIS-DI------------SPLANLTKMYSLNLGANHNLSD 147 (347)
T ss_dssp GTTCTTCCEEECCS-SCCCCCGG-G-TTCTTCSEEECTTSCCC-CC------------GGGTTCTTCCEEECTTCTTCCC
T ss_pred hhcCCcCCEEEccC-CcccCchH-H-cCCCcCCEEECcCCccc-Cc------------hhhccCCceeEEECCCCCCccc
Confidence 67889999999999 57788764 4 89999999999999876 44 337778888888887774 444
Q ss_pred cccccccccCcEEEEE
Q 039375 83 LQEGFLARKLERFKIS 98 (311)
Q Consensus 83 lp~~~~l~~L~~l~~~ 98 (311)
++....+++|+.+.+.
T Consensus 148 ~~~~~~l~~L~~L~l~ 163 (347)
T 4fmz_A 148 LSPLSNMTGLNYLTVT 163 (347)
T ss_dssp CGGGTTCTTCCEEECC
T ss_pred ccchhhCCCCcEEEec
Confidence 4443347778887775
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.67 E-value=7.4e-16 Score=150.59 Aligned_cols=252 Identities=17% Similarity=0.103 Sum_probs=133.7
Q ss_pred CCCCccEEecCCCCCCc-ccChhHHHh-ccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc-c
Q 039375 6 QVTKLRLLDLRDCFHLK-VIAPNVISS-LIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS-I 82 (311)
Q Consensus 6 ~L~~L~~L~L~~c~~l~-~lp~~i~~~-L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~-~ 82 (311)
.+++|++|++++| .+. .+|..+ .+ +++|++|++++|.+.+.+ | ..++.+++|++|+++.|... .
T Consensus 267 ~l~~L~~L~L~~n-~l~~~ip~~~-~~~~~~L~~L~Ls~n~l~~~~--p---------~~~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 267 PLKSLQYLSLAEN-KFTGEIPDFL-SGACDTLTGLDLSGNHFYGAV--P---------PFFGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp CCTTCCEEECCSS-EEEESCCCCS-CTTCTTCSEEECCSSEEEECC--C---------GGGGGCTTCCEEECCSSEEEEE
T ss_pred ccCCCCEEECcCC-ccCCccCHHH-HhhcCcCCEEECcCCcCCCcc--c---------hHHhcCCCccEEECCCCcccCc
Confidence 4556666666663 333 555554 33 366666666666555444 4 55555666666666555543 4
Q ss_pred cccc-cc-cccCcEEEEEecCccccccccccccccccccccccccccc-ccccccccCc-----------------eeeE
Q 039375 83 LQEG-FL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHE-RLRELKLKPD-----------------FTDI 142 (311)
Q Consensus 83 lp~~-~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~-----------------l~~L 142 (311)
+|.. +. +++|+.++++. +.+.+.+|... .++. .++.+.+..+ ++.|
T Consensus 334 ip~~~l~~l~~L~~L~Ls~--n~l~~~~p~~l------------~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 334 LPMDTLLKMRGLKVLDLSF--NEFSGELPESL------------TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCHHHHTTCTTCCEEECCS--SEEEECCCTTH------------HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred CCHHHHhcCCCCCEEeCcC--CccCccccHHH------------HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 5543 22 55555555531 12222222111 1111 2222222221 2333
Q ss_pred EccccCCcceecccccccccccceEEEec-eEec-ccccccCcccccccEEeC-------CCCcccccCccEEEEecCCC
Q 039375 143 CSMKLQAINNVEYISQSRITLTVSLFIRR-GIFN-GRMLRETFEEVGNDKILL-------PSSSVSFRNLTKLVAVGCKE 213 (311)
Q Consensus 143 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~~~~~~~~~~l~~L~~~~-------~~~~~~l~~L~~L~l~~~~~ 213 (311)
.+..+. ++.........+++|+.|++++ .+.. .+........+..+.+.+ |.....+++|+.|++++| +
T Consensus 400 ~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~ 477 (768)
T 3rgz_A 400 YLQNNG-FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN-D 477 (768)
T ss_dssp ECCSSE-EEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-C
T ss_pred ECCCCc-cccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC-c
Confidence 333321 1111111115566777777765 2221 111111112333333221 444566788889999888 7
Q ss_pred ceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEe
Q 039375 214 LIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVI 293 (311)
Q Consensus 214 l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~ 293 (311)
++. ..+..+..+++|++|++++|...+.+ +.....+++|++|++.++.--..+ +.....+++|++|+++
T Consensus 478 l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~--------p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 478 LTG-EIPSGLSNCTNLNWISLSNNRLTGEI--------PKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLN 546 (768)
T ss_dssp CCS-CCCGGGGGCTTCCEEECCSSCCCSCC--------CGGGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECC
T ss_pred ccC-cCCHHHhcCCCCCEEEccCCccCCcC--------ChHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECC
Confidence 776 45667788889999999888754444 223456888999999888533344 2355678899999998
Q ss_pred cCCC
Q 039375 294 GCPK 297 (311)
Q Consensus 294 ~c~~ 297 (311)
+|+-
T Consensus 547 ~N~l 550 (768)
T 3rgz_A 547 TNLF 550 (768)
T ss_dssp SSEE
T ss_pred CCcc
Confidence 8743
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.67 E-value=5.9e-16 Score=148.17 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=41.7
Q ss_pred cccCccEEEEecCCCceeecCccccccCCCCCEEeeccCc------CceEEeccCCcccccccccccccceeeccccccc
Q 039375 199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCR------AMTEVVINDKEGVDIEEIVFSKLKALILCDLDSL 272 (311)
Q Consensus 199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~------~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l 272 (311)
.+++|+.|++++| +++. . +..+..+++|+.|++++|. ..+.+ +.....+++|++|+++++. +
T Consensus 511 ~l~~L~~L~Ls~N-~l~~-i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~-l 578 (636)
T 4eco_A 511 TLPYLVGIDLSYN-SFSK-F-PTQPLNSSTLKGFGIRNQRDAQGNRTLREW--------PEGITLCPSLTQLQIGSND-I 578 (636)
T ss_dssp TCTTCCEEECCSS-CCSS-C-CCGGGGCSSCCEEECCSCBCTTCCBCCCCC--------CTTGGGCSSCCEEECCSSC-C
T ss_pred cCCCcCEEECCCC-CCCC-c-ChhhhcCCCCCEEECCCCcccccCcccccC--------hHHHhcCCCCCEEECCCCc-C
Confidence 4455555555555 4444 1 2334445555555554322 11111 2233456667777776654 3
Q ss_pred ceeccCCceecCCCccEEEEecCCCC
Q 039375 273 TSFCSANYTFKFPSLEYLEVIGCPKM 298 (311)
Q Consensus 273 ~~~~~~~~~~~~~~L~~L~i~~c~~l 298 (311)
+.+.. . .+++|++|++++|+-.
T Consensus 579 ~~ip~--~--~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 579 RKVNE--K--ITPNISVLDIKDNPNI 600 (636)
T ss_dssp CBCCS--C--CCTTCCEEECCSCTTC
T ss_pred CccCH--h--HhCcCCEEECcCCCCc
Confidence 55522 1 2367777777776543
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.67 E-value=1e-15 Score=145.55 Aligned_cols=87 Identities=18% Similarity=0.181 Sum_probs=65.0
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
|..|+++++|++|++++ +.+..+++..++++++|++|++++|.+. .+. | ..++.+++|++|+++.|.+
T Consensus 74 ~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~-~---------~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 74 EDTFQSQHRLDTLVLTA-NPLIFMAETALSGPKALKHLFFIQTGIS-SID-F---------IPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp TTTTTTCTTCCEEECTT-CCCSEECTTTTSSCTTCCEEECTTSCCS-CGG-G---------SCCTTCTTCCEEECCSSCC
T ss_pred hhhccCccccCeeeCCC-CcccccChhhhcccccccEeeccccCcc-cCC-c---------chhccCCcccEEECCCCcc
Confidence 45688999999999999 6777664433499999999999999887 332 3 5577888888888888776
Q ss_pred ccc--ccccccccCcEEEEEe
Q 039375 81 SIL--QEGFLARKLERFKISI 99 (311)
Q Consensus 81 ~~l--p~~~~l~~L~~l~~~~ 99 (311)
..+ |..+.+++|+.++++.
T Consensus 142 ~~~~~~~~~~l~~L~~L~L~~ 162 (606)
T 3t6q_A 142 SSIKLPKGFPTEKLKVLDFQN 162 (606)
T ss_dssp CCCCCCTTCCCTTCCEEECCS
T ss_pred cccCcccccCCcccCEEEccc
Confidence 655 4555577788777753
No 21
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=1.1e-15 Score=140.08 Aligned_cols=224 Identities=17% Similarity=0.175 Sum_probs=148.8
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG- 86 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~- 86 (311)
.++++|+|++ +.++.+++..++++++|++|++++|.+. .+. + ..+..+++|++|+++.|.+..+|..
T Consensus 64 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~-~---------~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (440)
T 3zyj_A 64 TNTRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRNHIR-TIE-I---------GAFNGLANLNTLELFDNRLTTIPNGA 131 (440)
T ss_dssp TTCSEEECCS-CCCCEECTTTTSSCSSCCEEECCSSCCC-EEC-G---------GGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred CCCcEEEccC-CcCCeeCHHHhhCCCCCCEEECCCCcCC-ccC-h---------hhccCCccCCEEECCCCcCCeeCHhH
Confidence 5789999999 7888886554599999999999999887 442 4 6788899999999999998888874
Q ss_pred c-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375 87 F-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV 165 (311)
Q Consensus 87 ~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~ 165 (311)
+ .+++|+.++++.+. +..+|.. .+ ..++++ +.|.+..+..+..+.......+++|+
T Consensus 132 ~~~l~~L~~L~L~~N~---i~~~~~~-~~----------~~l~~L---------~~L~l~~~~~l~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNP---IESIPSY-AF----------NRIPSL---------RRLDLGELKRLSYISEGAFEGLSNLR 188 (440)
T ss_dssp SCSCSSCCEEECCSCC---CCEECTT-TT----------TTCTTC---------CEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred hhccccCceeeCCCCc---ccccCHH-Hh----------hhCccc---------CEeCCCCCCCcceeCcchhhcccccC
Confidence 3 38899999886332 1111100 01 333433 44555555555444322125677888
Q ss_pred eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEe
Q 039375 166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVV 244 (311)
Q Consensus 166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~ 244 (311)
.|++++ .+..++ ....+++|+.|++++| +++. ..+..+..+++|+.|++++|. +..+.
T Consensus 189 ~L~L~~n~l~~~~------------------~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~ 247 (440)
T 3zyj_A 189 YLNLAMCNLREIP------------------NLTPLIKLDELDLSGN-HLSA-IRPGSFQGLMHLQKLWMIQSQ-IQVIE 247 (440)
T ss_dssp EEECTTSCCSSCC------------------CCTTCSSCCEEECTTS-CCCE-ECTTTTTTCTTCCEEECTTCC-CCEEC
T ss_pred eecCCCCcCcccc------------------ccCCCcccCEEECCCC-ccCc-cChhhhccCccCCEEECCCCc-eeEEC
Confidence 888876 111111 1445678888888888 7887 555677888888888888764 44442
Q ss_pred ccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCC
Q 039375 245 INDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCP 296 (311)
Q Consensus 245 ~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 296 (311)
. .....+++|++|+++++ +++.+... ....+++|++|++.++|
T Consensus 248 ~-------~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 248 R-------NAFDNLQSLVEINLAHN-NLTLLPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp T-------TSSTTCTTCCEEECTTS-CCCCCCTT-TTSSCTTCCEEECCSSC
T ss_pred h-------hhhcCCCCCCEEECCCC-CCCccChh-HhccccCCCEEEcCCCC
Confidence 2 12245788888888876 46655321 23457888888887653
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=2.8e-15 Score=142.55 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=23.9
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccce
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVE 46 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~ 46 (311)
.++++++|++|++++ +.++.++++.++++++|++|++++|.+.
T Consensus 51 ~~~~l~~L~~L~Ls~-n~l~~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 51 SFSNFSELQWLDLSR-CEIETIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp TTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred hccCCccCcEEeCCC-CcccccCHHHhhchhhcCEeECCCCccc
Confidence 455566666666666 3555553332356666666666666554
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.66 E-value=6.5e-16 Score=142.13 Aligned_cols=78 Identities=21% Similarity=0.178 Sum_probs=55.6
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
+++++++|++|++++ +.++.+| ++ +++++|++|++++|.+. .+ . ++.+++|++|+++.|.+..
T Consensus 37 ~~~~l~~L~~L~Ls~-n~l~~~~-~l-~~l~~L~~L~Ls~n~l~-~~------------~-~~~l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 37 SEEQLATLTSLDCHN-SSITDMT-GI-EKLTGLTKLICTSNNIT-TL------------D-LSQNTNLTYLACDSNKLTN 99 (457)
T ss_dssp EHHHHTTCCEEECCS-SCCCCCT-TG-GGCTTCSEEECCSSCCS-CC------------C-CTTCTTCSEEECCSSCCSC
T ss_pred ChhHcCCCCEEEccC-CCcccCh-hh-cccCCCCEEEccCCcCC-eE------------c-cccCCCCCEEECcCCCCce
Confidence 456788888888888 5777777 44 88888888888888775 33 2 5667777777777777666
Q ss_pred cccccccccCcEEEEE
Q 039375 83 LQEGFLARKLERFKIS 98 (311)
Q Consensus 83 lp~~~~l~~L~~l~~~ 98 (311)
++ ...+++|+.++++
T Consensus 100 ~~-~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 100 LD-VTPLTKLTYLNCD 114 (457)
T ss_dssp CC-CTTCTTCCEEECC
T ss_pred ee-cCCCCcCCEEECC
Confidence 64 2236677777665
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.65 E-value=1.5e-15 Score=139.38 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=66.5
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc-ccc
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL-QEG 86 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l-p~~ 86 (311)
++|++|+|++ +.++.+++..++++++|++|++++|.+...+. | ..++.+++|++|++++|.+..+ |..
T Consensus 30 ~~l~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~-~---------~~~~~l~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSL-NSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-N---------NTFRGLSSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp TTCCEEECCS-SCCCEECTTTTSSCTTCCEEECCCCSTTCEEC-T---------TTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred CccCEEEecC-CccCcCChhHhccCccccEEECcCCcccceEC-c---------ccccccccCCEEeCCCCccCccChhh
Confidence 6899999999 68887744434999999999999998865553 3 6788999999999999997766 556
Q ss_pred cc-cccCcEEEEEe
Q 039375 87 FL-ARKLERFKISI 99 (311)
Q Consensus 87 ~~-l~~L~~l~~~~ 99 (311)
+. +++|+.++++.
T Consensus 99 ~~~l~~L~~L~L~~ 112 (455)
T 3v47_A 99 FNGLANLEVLTLTQ 112 (455)
T ss_dssp TTTCTTCCEEECTT
T ss_pred ccCcccCCEEeCCC
Confidence 64 89999998863
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.65 E-value=2.5e-15 Score=132.28 Aligned_cols=239 Identities=13% Similarity=0.100 Sum_probs=130.5
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF 87 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~ 87 (311)
++|++|++++ +.++.+++..++++++|++|++++|.+.... | ..++.+++|++|+++.|.+..+|..+
T Consensus 52 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~---------~~~~~l~~L~~L~Ls~n~l~~l~~~~ 119 (330)
T 1xku_A 52 PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKIS--P---------GAFAPLVKLERLYLSKNQLKELPEKM 119 (330)
T ss_dssp TTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCCCBC--T---------TTTTTCTTCCEEECCSSCCSBCCSSC
T ss_pred CCCeEEECCC-CcCCEeChhhhccCCCCCEEECCCCcCCeeC--H---------HHhcCCCCCCEEECCCCcCCccChhh
Confidence 4677888888 5677776643478888888888888776333 4 66777888888888877777777766
Q ss_pred ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcce--ecccccccccccc
Q 039375 88 LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINN--VEYISQSRITLTV 165 (311)
Q Consensus 88 ~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~--~~~~~~~~~~~L~ 165 (311)
. ++|+.++++.+. + ..++.. .+ .++++++.+.+.. +. ++. ........+++|+
T Consensus 120 ~-~~L~~L~l~~n~--l-~~~~~~-~~----------~~l~~L~~L~l~~---------n~-l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 120 P-KTLQELRVHENE--I-TKVRKS-VF----------NGLNQMIVVELGT---------NP-LKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp C-TTCCEEECCSSC--C-CBBCHH-HH----------TTCTTCCEEECCS---------SC-CCGGGBCTTGGGGCTTCC
T ss_pred c-ccccEEECCCCc--c-cccCHh-Hh----------cCCccccEEECCC---------Cc-CCccCcChhhccCCCCcC
Confidence 5 677777765222 1 111100 01 3334444444332 11 111 0000015567777
Q ss_pred eEEEec-eEecccccccCcccccccEEeC-------CCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccC
Q 039375 166 SLFIRR-GIFNGRMLRETFEEVGNDKILL-------PSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGC 237 (311)
Q Consensus 166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~-------~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c 237 (311)
+|++++ .+..++... ...+..+.+.+ +.....+++|+.|++++| ++++ .++..+..+++|+.|++++|
T Consensus 175 ~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 175 YIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISA-VDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp EEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCE-ECTTTGGGSTTCCEEECCSS
T ss_pred EEECCCCccccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCce-eChhhccCCCCCCEEECCCC
Confidence 777765 222221111 12333333221 333455667777777777 6666 34445666777777777766
Q ss_pred cCceEEeccCCcccccccccccccceeecccccccceeccCCc-----eecCCCccEEEEecCCC
Q 039375 238 RAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANY-----TFKFPSLEYLEVIGCPK 297 (311)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~-----~~~~~~L~~L~i~~c~~ 297 (311)
. +..+ +.....+++|++|.+.++. ++.+..... ....++++.|++.+.+-
T Consensus 251 ~-l~~l--------p~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 251 K-LVKV--------PGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp C-CSSC--------CTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred c-CccC--------ChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcc
Confidence 4 2232 1123456777777777653 444422110 01235677777776653
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.65 E-value=2.6e-15 Score=148.14 Aligned_cols=87 Identities=21% Similarity=0.238 Sum_probs=57.9
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
|..++++++|++|+|++|..+..++++.++++++|++|++++|.+.... | ..++.+++|++|+++.|..
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~--p---------~~~~~l~~L~~L~Ls~n~l 109 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH--P---------DAFQGLFHLFELRLYFCGL 109 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC--T---------TSSCSCSSCCCEECTTCCC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC--H---------hHccCCcccCEeeCcCCCC
Confidence 3467788888888888866667774443488888888888888876443 5 5666667777777766664
Q ss_pred cc-cccc--c-ccccCcEEEEE
Q 039375 81 SI-LQEG--F-LARKLERFKIS 98 (311)
Q Consensus 81 ~~-lp~~--~-~l~~L~~l~~~ 98 (311)
.. +|.. + .+++|+.++++
T Consensus 110 ~~~~~~~~~~~~L~~L~~L~Ls 131 (844)
T 3j0a_A 110 SDAVLKDGYFRNLKALTRLDLS 131 (844)
T ss_dssp SSCCSTTCCCSSCSSCCEEEEE
T ss_pred CcccccCccccccCCCCEEECC
Confidence 43 3332 2 26666666665
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.65 E-value=4.3e-15 Score=137.03 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=52.4
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL 83 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l 83 (311)
+..+++|++|++++ +.++.+|+ + +++++|++|++++|.+. .+ + . ++.+++|++|+++.|.+..+
T Consensus 64 ~~~l~~L~~L~Ls~-n~l~~~~~-~-~~l~~L~~L~l~~n~l~-~~--~---------~-~~~l~~L~~L~L~~n~l~~~ 127 (466)
T 1o6v_A 64 VEYLNNLTQINFSN-NQLTDITP-L-KNLTKLVDILMNNNQIA-DI--T---------P-LANLTNLTGLTLFNNQITDI 127 (466)
T ss_dssp GGGCTTCCEEECCS-SCCCCCGG-G-TTCTTCCEEECCSSCCC-CC--G---------G-GTTCTTCCEEECCSSCCCCC
T ss_pred hhhhcCCCEEECCC-CccCCchh-h-hccccCCEEECCCCccc-cC--h---------h-hcCCCCCCEEECCCCCCCCC
Confidence 56677888888888 56777766 4 77888888888877765 33 2 2 55666666666666665555
Q ss_pred ccccccccCcEEEEEe
Q 039375 84 QEGFLARKLERFKISI 99 (311)
Q Consensus 84 p~~~~l~~L~~l~~~~ 99 (311)
+....+++|+.++++.
T Consensus 128 ~~~~~l~~L~~L~l~~ 143 (466)
T 1o6v_A 128 DPLKNLTNLNRLELSS 143 (466)
T ss_dssp GGGTTCTTCSEEEEEE
T ss_pred hHHcCCCCCCEEECCC
Confidence 5422356666666653
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.5e-15 Score=149.09 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=29.5
Q ss_pred CCccC--CCCCccEEecCCCCCCcccChhHHHhccccceEEecccc-cee
Q 039375 1 PKALG--QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCS-VEW 47 (311)
Q Consensus 1 P~~i~--~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~-~~~ 47 (311)
|..++ ++++|++|+|++|...+.+|..+ ++|++|++|++++|. +.+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg 530 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISA 530 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCH
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCccc
Confidence 44555 67777777777755555666665 667777777777665 543
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.64 E-value=3.5e-15 Score=137.59 Aligned_cols=237 Identities=16% Similarity=0.162 Sum_probs=132.1
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL 83 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l 83 (311)
++++++|++|++++ +.+..+++ + +++++|++|++++|.+. .+ ..++.+++|++|+++.|.+..+
T Consensus 86 ~~~l~~L~~L~l~~-n~l~~~~~-~-~~l~~L~~L~L~~n~l~-~~------------~~~~~l~~L~~L~l~~n~l~~~ 149 (466)
T 1o6v_A 86 LKNLTKLVDILMNN-NQIADITP-L-ANLTNLTGLTLFNNQIT-DI------------DPLKNLTNLNRLELSSNTISDI 149 (466)
T ss_dssp GTTCTTCCEEECCS-SCCCCCGG-G-TTCTTCCEEECCSSCCC-CC------------GGGTTCTTCSEEEEEEEEECCC
T ss_pred hhccccCCEEECCC-CccccChh-h-cCCCCCCEEECCCCCCC-CC------------hHHcCCCCCCEEECCCCccCCC
Confidence 66778888888888 56777766 4 88888888888888775 44 3367788888888887777776
Q ss_pred ccccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc-------------eeeEEccccCCc
Q 039375 84 QEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD-------------FTDICSMKLQAI 150 (311)
Q Consensus 84 p~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------------l~~L~l~~~~~~ 150 (311)
+....+++|+.+.+.... ..++ .+ +++++++.+.+..+ ++.|.+..+. +
T Consensus 150 ~~~~~l~~L~~L~l~~~~----~~~~---~~----------~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l 211 (466)
T 1o6v_A 150 SALSGLTSLQQLSFGNQV----TDLK---PL----------ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-I 211 (466)
T ss_dssp GGGTTCTTCSEEEEEESC----CCCG---GG----------TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-C
T ss_pred hhhccCCcccEeecCCcc----cCch---hh----------ccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCc-c
Confidence 653347788888775211 1111 11 34444555544432 3333333221 1
Q ss_pred ceecccccccccccceEEEec-eEecccccccCcccccccEEeC-----CCCcccccCccEEEEecCCCceeecCccccc
Q 039375 151 NNVEYISQSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILL-----PSSSVSFRNLTKLVAVGCKELIHLVTSSTAK 224 (311)
Q Consensus 151 ~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~-----~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~ 224 (311)
+.... ...+++|+.|++++ .+.....+. ....+..+.+.+ ......+++|+.|++++| +++.+ + .+.
T Consensus 212 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~-~--~~~ 284 (466)
T 1o6v_A 212 SDITP--LGILTNLDELSLNGNQLKDIGTLA-SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-QISNI-S--PLA 284 (466)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGGGG-GCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCCCC-G--GGT
T ss_pred ccccc--ccccCCCCEEECCCCCcccchhhh-cCCCCCEEECCCCccccchhhhcCCCCCEEECCCC-ccCcc-c--ccc
Confidence 11100 03455566666554 111111111 111233333222 122445566667777666 55552 2 155
Q ss_pred cCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecC
Q 039375 225 TLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC 295 (311)
Q Consensus 225 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c 295 (311)
.+++|+.|++++|.. ..+. ....+++|++|.+.++. +..+.+ ...+++|++|++.+|
T Consensus 285 ~l~~L~~L~L~~n~l-~~~~---------~~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 285 GLTALTNLELNENQL-EDIS---------PISNLKNLTYLTLYFNN-ISDISP---VSSLTKLQRLFFYNN 341 (466)
T ss_dssp TCTTCSEEECCSSCC-SCCG---------GGGGCTTCSEEECCSSC-CSCCGG---GGGCTTCCEEECCSS
T ss_pred CCCccCeEEcCCCcc-cCch---------hhcCCCCCCEEECcCCc-CCCchh---hccCccCCEeECCCC
Confidence 666777777766542 2221 13567888888888873 555432 457888888888876
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.64 E-value=4.3e-15 Score=141.23 Aligned_cols=89 Identities=15% Similarity=-0.013 Sum_probs=50.7
Q ss_pred cccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceec
Q 039375 197 SVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFC 276 (311)
Q Consensus 197 ~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~ 276 (311)
...+++|+.|++++| +++. ..+..+..+++|+.|++++|...+.+. +.....+++|++|.++++. ++.+.
T Consensus 420 ~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~l~~L~~L~Ls~n~-l~~~~ 489 (606)
T 3vq2_A 420 FLSLEKLLYLDISYT-NTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTL-------SNVFANTTNLTFLDLSKCQ-LEQIS 489 (606)
T ss_dssp TTTCTTCCEEECTTS-CCEE-CCTTTTTTCTTCCEEECTTCEEGGGEE-------CSCCTTCTTCCEEECTTSC-CCEEC
T ss_pred hhccccCCEEECcCC-CCCc-cchhhhcCCCCCCEEECCCCcCCCcch-------HHhhccCCCCCEEECCCCc-CCccC
Confidence 344556666666666 4554 334455556666666666554332211 1123456778888887773 55543
Q ss_pred cCCceecCCCccEEEEecCC
Q 039375 277 SANYTFKFPSLEYLEVIGCP 296 (311)
Q Consensus 277 ~~~~~~~~~~L~~L~i~~c~ 296 (311)
+ .....+++|++|++++|.
T Consensus 490 ~-~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 490 W-GVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp T-TTTTTCTTCCEEECCSSC
T ss_pred h-hhhcccccCCEEECCCCc
Confidence 2 134567788888888774
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.64 E-value=1.3e-15 Score=140.02 Aligned_cols=77 Identities=17% Similarity=0.140 Sum_probs=65.3
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
.++.+++|++|++++ +.++.+| + +.+++|++|++++|.+. .+ .++.+++|++|+++.|.+..
T Consensus 59 ~l~~l~~L~~L~Ls~-n~l~~~~--~-~~l~~L~~L~Ls~N~l~-~~-------------~~~~l~~L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 59 GIEKLTGLTKLICTS-NNITTLD--L-SQNTNLTYLACDSNKLT-NL-------------DVTPLTKLTYLNCDTNKLTK 120 (457)
T ss_dssp TGGGCTTCSEEECCS-SCCSCCC--C-TTCTTCSEEECCSSCCS-CC-------------CCTTCTTCCEEECCSSCCSC
T ss_pred hhcccCCCCEEEccC-CcCCeEc--c-ccCCCCCEEECcCCCCc-ee-------------ecCCCCcCCEEECCCCcCCe
Confidence 578899999999999 6788887 4 99999999999999876 33 27789999999999999888
Q ss_pred cccccccccCcEEEEE
Q 039375 83 LQEGFLARKLERFKIS 98 (311)
Q Consensus 83 lp~~~~l~~L~~l~~~ 98 (311)
+| .-.+++|+.++++
T Consensus 121 l~-~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 121 LD-VSQNPLLTYLNCA 135 (457)
T ss_dssp CC-CTTCTTCCEEECT
T ss_pred ec-CCCCCcCCEEECC
Confidence 76 2248899999875
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.64 E-value=2.6e-15 Score=130.72 Aligned_cols=229 Identities=15% Similarity=0.155 Sum_probs=147.9
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF 87 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~ 87 (311)
++|++|++++ +.++.+|.++++++++|++|++++|.+...-..| ..+..+++|++|++++|.+..+|..+
T Consensus 28 ~~l~~L~L~~-n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~~~~~~L~~L~Ls~n~i~~l~~~~ 97 (306)
T 2z66_A 28 SSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS---------QSDFGTTSLKYLDLSFNGVITMSSNF 97 (306)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEE---------HHHHSCSCCCEEECCSCSEEEEEEEE
T ss_pred CCCCEEECCC-CccCccCHhHhhccccCCEEECCCCccCcccCcc---------cccccccccCEEECCCCccccChhhc
Confidence 5899999999 6889999886699999999999999886221113 55567899999999999988888876
Q ss_pred c-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccce
Q 039375 88 L-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVS 166 (311)
Q Consensus 88 ~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~ 166 (311)
. +++|+.++++.+. ...++....+ ..+++++.+.+..+ . ++.........+++|++
T Consensus 98 ~~l~~L~~L~l~~n~---l~~~~~~~~~----------~~l~~L~~L~l~~n---------~-l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 98 LGLEQLEHLDFQHSN---LKQMSEFSVF----------LSLRNLIYLDISHT---------H-TRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp ETCTTCCEEECTTSE---EESSTTTTTT----------TTCTTCCEEECTTS---------C-CEECSTTTTTTCTTCCE
T ss_pred CCCCCCCEEECCCCc---ccccccchhh----------hhccCCCEEECCCC---------c-CCccchhhcccCcCCCE
Confidence 4 8999999875221 1111110011 34455555444332 1 11111111156778888
Q ss_pred EEEece-EecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEec
Q 039375 167 LFIRRG-IFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVI 245 (311)
Q Consensus 167 L~l~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 245 (311)
|++++. +... ..|.....+++|+.|++++| ++++ ..+..+..+++|+.|++++|.. ..+..
T Consensus 155 L~l~~n~l~~~---------------~~~~~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~N~l-~~~~~ 216 (306)
T 2z66_A 155 LKMAGNSFQEN---------------FLPDIFTELRNLTFLDLSQC-QLEQ-LSPTAFNSLSSLQVLNMSHNNF-FSLDT 216 (306)
T ss_dssp EECTTCEEGGG---------------EECSCCTTCTTCCEEECTTS-CCCE-ECTTTTTTCTTCCEEECTTSCC-SBCCS
T ss_pred EECCCCccccc---------------cchhHHhhCcCCCEEECCCC-CcCC-cCHHHhcCCCCCCEEECCCCcc-CccCh
Confidence 888761 1110 01223556788999999998 7887 4556778889999999987753 33211
Q ss_pred cCCcccccccccccccceeecccccccceeccCCceecC-CCccEEEEecCC
Q 039375 246 NDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKF-PSLEYLEVIGCP 296 (311)
Q Consensus 246 ~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~-~~L~~L~i~~c~ 296 (311)
.....+++|++|+++++. +...... ....+ ++|++|++++++
T Consensus 217 -------~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 217 -------FPYKCLNSLQVLDYSLNH-IMTSKKQ-ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp -------GGGTTCTTCCEEECTTSC-CCBCSSS-SCCCCCTTCCEEECTTCC
T ss_pred -------hhccCcccCCEeECCCCC-CcccCHH-HHHhhhccCCEEEccCCC
Confidence 112457888999998874 4444221 23445 488999887753
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.64 E-value=1.4e-15 Score=133.96 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=55.6
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF 87 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~ 87 (311)
++|++|++++ +.++.++++.++++++|++|++++|.+.... | ..++.+++|++|+++.|.+..+|..+
T Consensus 54 ~~l~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~---------~~~~~l~~L~~L~L~~n~l~~l~~~~ 121 (332)
T 2ft3_A 54 PDTTLLDLQN-NDISELRKDDFKGLQHLYALVLVNNKISKIH--E---------KAFSPLRKLQKLYISKNHLVEIPPNL 121 (332)
T ss_dssp TTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEEC--G---------GGSTTCTTCCEEECCSSCCCSCCSSC
T ss_pred CCCeEEECCC-CcCCccCHhHhhCCCCCcEEECCCCccCccC--H---------hHhhCcCCCCEEECCCCcCCccCccc
Confidence 5778888888 5677775533478888888888888776333 4 66777788888888777777777666
Q ss_pred ccccCcEEEEE
Q 039375 88 LARKLERFKIS 98 (311)
Q Consensus 88 ~l~~L~~l~~~ 98 (311)
. ++|+.++++
T Consensus 122 ~-~~L~~L~l~ 131 (332)
T 2ft3_A 122 P-SSLVELRIH 131 (332)
T ss_dssp C-TTCCEEECC
T ss_pred c-ccCCEEECC
Confidence 5 677777665
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=5.2e-15 Score=129.42 Aligned_cols=221 Identities=16% Similarity=0.116 Sum_probs=155.3
Q ss_pred CCccEEecCCCCCCc---ccChhHHHhccccceEEecc-ccceeeeeccccccccccccccCCCCCccEEEEeecCcc-c
Q 039375 8 TKLRLLDLRDCFHLK---VIAPNVISSLIRLEELCMGN-CSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS-I 82 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~---~lp~~i~~~L~~Lq~L~l~~-~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~-~ 82 (311)
.++++|++++ +.+. .+|..+ +++++|++|++++ |.+...+ | ..++.+++|++|+++.|.+. .
T Consensus 50 ~~l~~L~L~~-~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~--p---------~~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSG-LNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPI--P---------PAIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp CCEEEEEEEC-CCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCC--C---------GGGGGCTTCSEEEEEEECCEEE
T ss_pred ceEEEEECCC-CCccCCcccChhH-hCCCCCCeeeCCCCCcccccC--C---------hhHhcCCCCCEEECcCCeeCCc
Confidence 5899999999 5665 689887 9999999999995 8887667 7 88999999999999999976 7
Q ss_pred cccccc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccc
Q 039375 83 LQEGFL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRI 161 (311)
Q Consensus 83 lp~~~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~ 161 (311)
+|..+. +++|++++++.+ .+.+.+|.. + +.+++++.+.+..+ .++...+.....+
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~--~----------~~l~~L~~L~L~~N----------~l~~~~p~~l~~l 172 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYN--ALSGTLPPS--I----------SSLPNLVGITFDGN----------RISGAIPDSYGSF 172 (313)
T ss_dssp CCGGGGGCTTCCEEECCSS--EEESCCCGG--G----------GGCTTCCEEECCSS----------CCEEECCGGGGCC
T ss_pred CCHHHhCCCCCCEEeCCCC--ccCCcCChH--H----------hcCCCCCeEECcCC----------cccCcCCHHHhhh
Confidence 887775 899999988632 233333321 1 45555655555432 1221111111455
Q ss_pred c-ccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375 162 T-LTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA 239 (311)
Q Consensus 162 ~-~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~ 239 (311)
+ +|+.|++++ .+.. ..|.....+. |+.|++++| +++. ..+..+..+++|+.|++++|..
T Consensus 173 ~~~L~~L~L~~N~l~~----------------~~~~~~~~l~-L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 173 SKLFTSMTISRNRLTG----------------KIPPTFANLN-LAFVDLSRN-MLEG-DASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp CTTCCEEECCSSEEEE----------------ECCGGGGGCC-CSEEECCSS-EEEE-CCGGGCCTTSCCSEEECCSSEE
T ss_pred hhcCcEEECcCCeeec----------------cCChHHhCCc-ccEEECcCC-cccC-cCCHHHhcCCCCCEEECCCCce
Confidence 5 788888876 1111 1122234454 999999999 8887 5677889999999999998864
Q ss_pred ceEEeccCCcccccccccccccceeecccccccc-eeccCCceecCCCccEEEEecCC
Q 039375 240 MTEVVINDKEGVDIEEIVFSKLKALILCDLDSLT-SFCSANYTFKFPSLEYLEVIGCP 296 (311)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~-~~~~~~~~~~~~~L~~L~i~~c~ 296 (311)
...+. ....+++|++|++.++. +. .+ +.....+++|++|+++++.
T Consensus 234 ~~~~~---------~~~~l~~L~~L~Ls~N~-l~~~~--p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 234 AFDLG---------KVGLSKNLNGLDLRNNR-IYGTL--PQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CCBGG---------GCCCCTTCCEEECCSSC-CEECC--CGGGGGCTTCCEEECCSSE
T ss_pred eeecC---------cccccCCCCEEECcCCc-ccCcC--ChHHhcCcCCCEEECcCCc
Confidence 32221 12567899999999875 44 33 2245678999999999874
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.63 E-value=1.2e-14 Score=137.09 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=30.3
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccce
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVE 46 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~ 46 (311)
.+..+++|++|++++ +.++.++++.++++++|++|++++|.+.
T Consensus 47 ~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 47 SFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp TTTTCSSCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred HhhCCCCceEEECCC-CcCCccCcccccCchhCCEEeCcCCcCC
Confidence 566777777777777 4666665544477777777777777765
No 36
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=134.40 Aligned_cols=235 Identities=16% Similarity=0.110 Sum_probs=138.9
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG- 86 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~- 86 (311)
++|++|++++ +.++.+|++.++++++|++|++++|.+. .+. | ..++.+++|++|++++|.+..+|..
T Consensus 52 ~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~-~---------~~~~~l~~L~~L~Ls~n~l~~~~~~~ 119 (353)
T 2z80_A 52 EAVKSLDLSN-NRITYISNSDLQRCVNLQALVLTSNGIN-TIE-E---------DSFSSLGSLEHLDLSYNYLSNLSSSW 119 (353)
T ss_dssp TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCC-EEC-T---------TTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred ccCcEEECCC-CcCcccCHHHhccCCCCCEEECCCCccC-ccC-H---------hhcCCCCCCCEEECCCCcCCcCCHhH
Confidence 4899999999 6788887744489999999999999887 442 4 5688889999999999888888876
Q ss_pred c-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375 87 F-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV 165 (311)
Q Consensus 87 ~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~ 165 (311)
+ .+++|+.++++.+. ...+|....+ ..++++ +.|.+.++..++.........+++|+
T Consensus 120 ~~~l~~L~~L~L~~n~---l~~l~~~~~~----------~~l~~L---------~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNP---YKTLGETSLF----------SHLTKL---------QILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp HTTCTTCSEEECTTCC---CSSSCSSCSC----------TTCTTC---------CEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred hCCCccCCEEECCCCC---CcccCchhhh----------ccCCCC---------cEEECCCCccccccCHHHccCCCCCC
Confidence 3 38889988875322 1122210011 333444 44444444333333221115566777
Q ss_pred eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEe
Q 039375 166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVV 244 (311)
Q Consensus 166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~ 244 (311)
+|++++ .+.. ..+.....+++|+.|+++++ +++. .+......+++|+.|++++|.......
T Consensus 178 ~L~l~~n~l~~----------------~~~~~l~~l~~L~~L~l~~n-~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 178 ELEIDASDLQS----------------YEPKSLKSIQNVSHLILHMK-QHIL-LLEIFVDVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp EEEEEETTCCE----------------ECTTTTTTCSEEEEEEEECS-CSTT-HHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred EEECCCCCcCc----------------cCHHHHhccccCCeecCCCC-cccc-chhhhhhhcccccEEECCCCccccccc
Confidence 777765 1111 01222444566667777666 4544 333334456666777766654322100
Q ss_pred ccCC-----------------------cccccccccccccceeecccccccceeccCCceecCCCccEEEEecCC
Q 039375 245 INDK-----------------------EGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCP 296 (311)
Q Consensus 245 ~~~~-----------------------~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 296 (311)
..-. ...+.....+++|++|+++++ .++.+... .+..+++|++|++.+++
T Consensus 240 ~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDG-IFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC
T ss_pred cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHH-HHhcCCCCCEEEeeCCC
Confidence 0000 001112345778899999887 46666321 13568899999998874
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.62 E-value=7.2e-15 Score=137.23 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=40.2
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc-
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI- 82 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~- 82 (311)
++.+++|++|++++ +.++.++++.++++++|++|++++|.+. .+ | .. .+++|++|++++|.+..
T Consensus 41 ~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l--p---------~~--~l~~L~~L~L~~N~l~~~ 105 (520)
T 2z7x_B 41 ILSLSKLRILIISH-NRIQYLDISVFKFNQELEYLDLSHNKLV-KI--S---------CH--PTVNLKHLDLSFNAFDAL 105 (520)
T ss_dssp HTTCTTCCEEECCS-SCCCEEEGGGGTTCTTCCEEECCSSCCC-EE--E---------CC--CCCCCSEEECCSSCCSSC
T ss_pred ccccccccEEecCC-CccCCcChHHhhcccCCCEEecCCCcee-ec--C---------cc--ccCCccEEeccCCccccc
Confidence 44555555555555 3444442222255555555555555554 44 2 22 45555555555555443
Q ss_pred -cccccc-cccCcEEEEEe
Q 039375 83 -LQEGFL-ARKLERFKISI 99 (311)
Q Consensus 83 -lp~~~~-l~~L~~l~~~~ 99 (311)
+|..+. +++|+.++++.
T Consensus 106 ~~p~~~~~l~~L~~L~L~~ 124 (520)
T 2z7x_B 106 PICKEFGNMSQLKFLGLST 124 (520)
T ss_dssp CCCGGGGGCTTCCEEEEEE
T ss_pred cchhhhccCCcceEEEecC
Confidence 334443 55666665553
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.61 E-value=7.1e-15 Score=129.52 Aligned_cols=76 Identities=26% Similarity=0.349 Sum_probs=50.7
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc-ccc
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL-QEG 86 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l-p~~ 86 (311)
.+|+++++++ +.++.+|.++ . ++|++|++++|.+. .+. | ..++.+++|++|+++.|.+..+ |..
T Consensus 33 c~l~~l~~~~-~~l~~ip~~~-~--~~l~~L~l~~n~i~-~~~-~---------~~~~~l~~L~~L~L~~n~l~~~~~~~ 97 (332)
T 2ft3_A 33 CHLRVVQCSD-LGLKAVPKEI-S--PDTTLLDLQNNDIS-ELR-K---------DDFKGLQHLYALVLVNNKISKIHEKA 97 (332)
T ss_dssp EETTEEECCS-SCCSSCCSCC-C--TTCCEEECCSSCCC-EEC-T---------TTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred ccCCEEECCC-CCccccCCCC-C--CCCeEEECCCCcCC-ccC-H---------hHhhCCCCCcEEECCCCccCccCHhH
Confidence 3677777777 5667777654 2 47777777777776 332 3 4667777777777777776665 444
Q ss_pred cc-cccCcEEEEE
Q 039375 87 FL-ARKLERFKIS 98 (311)
Q Consensus 87 ~~-l~~L~~l~~~ 98 (311)
+. +++|+.++++
T Consensus 98 ~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 98 FSPLRKLQKLYIS 110 (332)
T ss_dssp STTCTTCCEEECC
T ss_pred hhCcCCCCEEECC
Confidence 43 6777777765
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.61 E-value=8.5e-15 Score=128.86 Aligned_cols=242 Identities=11% Similarity=0.060 Sum_probs=144.7
Q ss_pred ccCCCCCccEEecCCCCCCccc-ChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVI-APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~l-p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
.++++++|++|++++ +.++.+ |..+ +++++|++|++++|.+. .+ | ..+. ++|++|+++.|.+.
T Consensus 71 ~~~~l~~L~~L~L~~-n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~-~l--~---------~~~~--~~L~~L~l~~n~l~ 134 (330)
T 1xku_A 71 DFKNLKNLHTLILIN-NKISKISPGAF-APLVKLERLYLSKNQLK-EL--P---------EKMP--KTLQELRVHENEIT 134 (330)
T ss_dssp TTTTCTTCCEEECCS-SCCCCBCTTTT-TTCTTCCEEECCSSCCS-BC--C---------SSCC--TTCCEEECCSSCCC
T ss_pred hhccCCCCCEEECCC-CcCCeeCHHHh-cCCCCCCEEECCCCcCC-cc--C---------hhhc--ccccEEECCCCccc
Confidence 588999999999999 678877 5565 99999999999999987 66 5 4433 78999999988887
Q ss_pred cccccc--ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc------------eeeEEcccc
Q 039375 82 ILQEGF--LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD------------FTDICSMKL 147 (311)
Q Consensus 82 ~lp~~~--~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~------------l~~L~l~~~ 147 (311)
.++... .+++|+.++++.+.....+..+. .+ ..+++++.+.+..+ ++.|.+..+
T Consensus 135 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~----------~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n 202 (330)
T 1xku_A 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENG--AF----------QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202 (330)
T ss_dssp BBCHHHHTTCTTCCEEECCSSCCCGGGBCTT--GG----------GGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTS
T ss_pred ccCHhHhcCCccccEEECCCCcCCccCcChh--hc----------cCCCCcCEEECCCCccccCCccccccCCEEECCCC
Confidence 777643 38888888876332111111110 11 34455555554432 333333322
Q ss_pred CCcceecccccccccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccC
Q 039375 148 QAINNVEYISQSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTL 226 (311)
Q Consensus 148 ~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l 226 (311)
. ++.........+++|+.|++++ .+. ...+.....+++|+.|++++| +++.+ +..+..+
T Consensus 203 ~-l~~~~~~~~~~l~~L~~L~Ls~n~l~----------------~~~~~~~~~l~~L~~L~L~~N-~l~~l--p~~l~~l 262 (330)
T 1xku_A 203 K-ITKVDAASLKGLNNLAKLGLSFNSIS----------------AVDNGSLANTPHLRELHLNNN-KLVKV--PGGLADH 262 (330)
T ss_dssp C-CCEECTGGGTTCTTCCEEECCSSCCC----------------EECTTTGGGSTTCCEEECCSS-CCSSC--CTTTTTC
T ss_pred c-CCccCHHHhcCCCCCCEEECCCCcCc----------------eeChhhccCCCCCCEEECCCC-cCccC--ChhhccC
Confidence 1 2222111113444555555543 000 011234567889999999999 88863 4567889
Q ss_pred CCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceec-cCCceecCCCccEEEEecC
Q 039375 227 VRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFC-SANYTFKFPSLEYLEVIGC 295 (311)
Q Consensus 227 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~-~~~~~~~~~~L~~L~i~~c 295 (311)
++|++|++++|. +..+....- ........++.++.+.+.+.+- ..+. .+..+..+++++.++++++
T Consensus 263 ~~L~~L~l~~N~-i~~~~~~~f-~~~~~~~~~~~l~~l~l~~N~~-~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 263 KYIQVVYLHNNN-ISAIGSNDF-CPPGYNTKKASYSGVSLFSNPV-QYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCEEECCSSC-CCCCCTTSS-SCSSCCTTSCCCSEEECCSSSS-CGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCcCEEECCCCc-CCccChhhc-CCcccccccccccceEeecCcc-cccccCccccccccceeEEEeccc
Confidence 999999999875 444422111 0011112357788899988763 2211 1123345667888877664
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.61 E-value=1.3e-14 Score=136.80 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=58.2
Q ss_pred CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
..++++++|++|++++ +.++.++++.++++++|++|++++|.+. .+ | .. .+++|++|++++|.+.
T Consensus 70 ~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l--p---------~~--~l~~L~~L~Ls~N~l~ 134 (562)
T 3a79_B 70 PDISFLSELRVLRLSH-NRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NI--S---------CC--PMASLRHLDLSFNDFD 134 (562)
T ss_dssp GGTTTCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECTTSCCC-EE--C---------SC--CCTTCSEEECCSSCCS
T ss_pred hhhccCCCccEEECCC-CCCCcCCHHHhCCCCCCCEEECCCCcCC-cc--C---------cc--ccccCCEEECCCCCcc
Confidence 3567777788888877 5677664443477778888888887776 66 4 33 6778888888877776
Q ss_pred ccc--cccc-cccCcEEEEEe
Q 039375 82 ILQ--EGFL-ARKLERFKISI 99 (311)
Q Consensus 82 ~lp--~~~~-l~~L~~l~~~~ 99 (311)
.++ ..+. +++|+.++++.
T Consensus 135 ~l~~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 135 VLPVCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp BCCCCGGGGGCTTCCEEEEEC
T ss_pred ccCchHhhcccCcccEEecCC
Confidence 654 4453 77888887764
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=2e-14 Score=141.82 Aligned_cols=87 Identities=23% Similarity=0.282 Sum_probs=70.4
Q ss_pred CCccCCCCCccEEecCCCCCCccc-ChhHHHhccccceEEeccccceeeeeccccccccccccc--cCCCCCccEEEEee
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVI-APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDE--LMLLPWLTTLEIDV 77 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~l-p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~--l~~L~~L~~L~l~~ 77 (311)
|..++++++|++|+|++ +.+..+ |..+ +++++|++|++++|.+...+ | .. ++.+++|++|+++.
T Consensus 66 ~~~f~~L~~L~~L~Ls~-N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~--~---------~~~~~~~L~~L~~L~Ls~ 132 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGS-SKIYFLHPDAF-QGLFHLFELRLYFCGLSDAV--L---------KDGYFRNLKALTRLDLSK 132 (844)
T ss_dssp TTTTSSCTTCCEEECTT-CCCCEECTTSS-CSCSSCCCEECTTCCCSSCC--S---------TTCCCSSCSSCCEEEEES
T ss_pred HHHhcCCCCCCEEECCC-CcCcccCHhHc-cCCcccCEeeCcCCCCCccc--c---------cCccccccCCCCEEECCC
Confidence 45689999999999999 677776 5555 99999999999999987444 3 33 88999999999999
Q ss_pred cCccccc--cccc-cccCcEEEEEec
Q 039375 78 KNDSILQ--EGFL-ARKLERFKISIG 100 (311)
Q Consensus 78 ~~~~~lp--~~~~-l~~L~~l~~~~~ 100 (311)
|....++ ..+. +++|+.++++.+
T Consensus 133 N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 133 NQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CcccccccchhHhhCCCCCEEECCCC
Confidence 9876653 3454 899999998743
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.60 E-value=1.2e-14 Score=135.62 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=67.9
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEecccccee-eeeccccccccccccccCCCCCccEEEEeecC
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEW-EVERANTERSNASLDELMLLPWLTTLEIDVKN 79 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~-~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~ 79 (311)
|..++++++|++|++++ +.++.+|.. .+++|++|++++|.+.. .+ | ..++.+++|++|++++|.
T Consensus 62 ~~~~~~l~~L~~L~Ls~-N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~--p---------~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 62 ISVFKFNQELEYLDLSH-NKLVKISCH---PTVNLKHLDLSFNAFDALPI--C---------KEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp GGGGTTCTTCCEEECCS-SCCCEEECC---CCCCCSEEECCSSCCSSCCC--C---------GGGGGCTTCCEEEEEESS
T ss_pred hHHhhcccCCCEEecCC-CceeecCcc---ccCCccEEeccCCccccccc--h---------hhhccCCcceEEEecCcc
Confidence 45789999999999999 788999985 89999999999999873 24 6 788999999999999988
Q ss_pred ccccccccccccC--cEEEEEec
Q 039375 80 DSILQEGFLARKL--ERFKISIG 100 (311)
Q Consensus 80 ~~~lp~~~~l~~L--~~l~~~~~ 100 (311)
+... ....+++| +.+++..+
T Consensus 127 l~~~-~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 127 LEKS-SVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCGG-GGGGGTTSCEEEEEEEEC
T ss_pred cchh-hccccccceeeEEEeecc
Confidence 6551 11236677 88888754
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=1.1e-14 Score=136.84 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=45.5
Q ss_pred CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
..++++++|++|++++ +.++.++++.++++++|++|++++|.+.... | ..++.+++|++|++++|.+.
T Consensus 44 ~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~---------~~~~~l~~L~~L~Ls~n~l~ 111 (549)
T 2z81_A 44 GDLRACANLQVLILKS-SRINTIEGDAFYSLGSLEHLDLSDNHLSSLS--S---------SWFGPLSSLKYLNLMGNPYQ 111 (549)
T ss_dssp STTSSCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCCSCC--H---------HHHTTCTTCCEEECTTCCCS
T ss_pred hhhhcCCcccEEECCC-CCcCccChhhccccccCCEEECCCCccCccC--H---------HHhccCCCCcEEECCCCccc
Confidence 3456666666666666 4555554333366666666666666655222 2 33555555555555555544
Q ss_pred c--cccccc-cccCcEEEEE
Q 039375 82 I--LQEGFL-ARKLERFKIS 98 (311)
Q Consensus 82 ~--lp~~~~-l~~L~~l~~~ 98 (311)
. .|..+. +++|+.++++
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~ 131 (549)
T 2z81_A 112 TLGVTSLFPNLTNLQTLRIG 131 (549)
T ss_dssp SSCSSCSCTTCTTCCEEEEE
T ss_pred ccchhhhhhccCCccEEECC
Confidence 2 223332 5555555554
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.59 E-value=6e-15 Score=135.50 Aligned_cols=207 Identities=14% Similarity=0.103 Sum_probs=135.2
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
|..++++++|++|+|++ +.++.++++.++++++|++|++++|.+. .+. + ..++.+++|+.|++++|.+
T Consensus 92 ~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~-~---------~~~~~l~~L~~L~L~~N~l 159 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLELFDNWLT-VIP-S---------GAFEYLSKLRELWLRNNPI 159 (452)
T ss_dssp TTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCS-BCC-T---------TTSSSCTTCCEEECCSCCC
T ss_pred HHHcCCCCCCCEEECCC-CccCCcChhhccCcccCCEEECCCCcCC-ccC-h---------hhhcccCCCCEEECCCCCc
Confidence 45688999999999999 7888887655599999999999999987 552 3 5578899999999999999
Q ss_pred ccccccc--ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc
Q 039375 81 SILQEGF--LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ 158 (311)
Q Consensus 81 ~~lp~~~--~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~ 158 (311)
..+|... .+++|+.+++..+. ....++.. .+ .++++++.+.+..+ ....+..+
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~-~~----------~~l~~L~~L~L~~n-------~l~~~~~~----- 214 (452)
T 3zyi_A 160 ESIPSYAFNRVPSLMRLDLGELK--KLEYISEG-AF----------EGLFNLKYLNLGMC-------NIKDMPNL----- 214 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCCCT--TCCEECTT-TT----------TTCTTCCEEECTTS-------CCSSCCCC-----
T ss_pred ceeCHhHHhcCCcccEEeCCCCC--CccccChh-hc----------cCCCCCCEEECCCC-------cccccccc-----
Confidence 9888754 38999999886322 22222210 11 44555655555443 01111111
Q ss_pred ccccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccC
Q 039375 159 SRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGC 237 (311)
Q Consensus 159 ~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c 237 (311)
..+++|+.|++++ .+... .+..+..+++|+.|++++| +++. ..+..+..+++|+.|++++|
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~----------------~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEI----------------RPGSFHGLSSLKKLWVMNS-QVSL-IERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp TTCTTCCEEECTTSCCSEE----------------CGGGGTTCTTCCEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSS
T ss_pred cccccccEEECcCCcCccc----------------CcccccCccCCCEEEeCCC-cCce-ECHHHhcCCCCCCEEECCCC
Confidence 5677888888876 11111 1122445677788888777 6776 44556677778888888766
Q ss_pred cCceEEeccCCcccccccccccccceeeccccc
Q 039375 238 RAMTEVVINDKEGVDIEEIVFSKLKALILCDLD 270 (311)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~ 270 (311)
. +..+... ....+++|+.|.+.+++
T Consensus 277 ~-l~~~~~~-------~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 277 N-LSSLPHD-------LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp C-CSCCCTT-------SSTTCTTCCEEECCSSC
T ss_pred c-CCccChH-------HhccccCCCEEEccCCC
Confidence 4 3333211 12346677777776543
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=7.6e-15 Score=126.50 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=46.4
Q ss_pred CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC-ccccc-
Q 039375 7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN-DSILQ- 84 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~-~~~lp- 84 (311)
.++|++|++++ +.++.+|++.++++++|++|++++|.+. .+. | ..++.+++|++|+++.|. +..++
T Consensus 31 ~~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~-~---------~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 31 PAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLA-RID-A---------AAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp CTTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCC-EEC-T---------TTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCCceEEEeeC-CcCCccCHHHcccCCCCCEEECCCCccc-eeC-H---------hhcCCccCCCEEeCCCCCCccccCH
Confidence 34666666666 5566665443466666777777666665 221 3 556666666666666664 55552
Q ss_pred cccc-cccCcEEEEE
Q 039375 85 EGFL-ARKLERFKIS 98 (311)
Q Consensus 85 ~~~~-l~~L~~l~~~ 98 (311)
..+. +++|+.+++.
T Consensus 99 ~~~~~l~~L~~L~l~ 113 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLD 113 (285)
T ss_dssp TTTTTCTTCCEEECT
T ss_pred HHhcCCcCCCEEECC
Confidence 3332 5566666553
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.59 E-value=2.5e-14 Score=137.88 Aligned_cols=84 Identities=15% Similarity=0.245 Sum_probs=53.6
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
.++++++|++|++++ +.++.++++.++++++|++|++++|.+. .+. + ..++.+++|++|+++.|.+..
T Consensus 44 ~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~-~---------~~~~~l~~L~~L~L~~n~l~~ 111 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGF-NTISKLEPELCQKLPMLKVLNLQHNELS-QLS-D---------KTFAFCTNLTELHLMSNSIQK 111 (680)
T ss_dssp GGGGGTTCSEEECCS-SCCCCCCTTHHHHCTTCCEEECCSSCCC-CCC-T---------TTTTTCTTCSEEECCSSCCCC
T ss_pred HHhCCCcCcEEECCC-CccCccCHHHHhcccCcCEEECCCCccC-ccC-h---------hhhccCCCCCEEECCCCccCc
Confidence 356677777777777 4566554444477777777777777665 441 1 346677777777777777666
Q ss_pred ccc-ccc-cccCcEEEEE
Q 039375 83 LQE-GFL-ARKLERFKIS 98 (311)
Q Consensus 83 lp~-~~~-l~~L~~l~~~ 98 (311)
++. .+. +++|+.++++
T Consensus 112 ~~~~~~~~l~~L~~L~Ls 129 (680)
T 1ziw_A 112 IKNNPFVKQKNLITLDLS 129 (680)
T ss_dssp CCSCTTTTCTTCCEEECC
T ss_pred cChhHccccCCCCEEECC
Confidence 653 332 6777777665
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.59 E-value=1.8e-14 Score=135.90 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=52.7
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF 87 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~ 87 (311)
++|++|++++ +.++.+|++.++++++|++|++++|.+.... | ..++.+++|++|++++|.+..+|..
T Consensus 52 ~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~---------~~~~~l~~L~~L~Ls~N~l~~lp~~- 118 (562)
T 3a79_B 52 PRTKALSLSQ-NSISELRMPDISFLSELRVLRLSHNRIRSLD--F---------HVFLFNQDLEYLDVSHNRLQNISCC- 118 (562)
T ss_dssp TTCCEEECCS-SCCCCCCGGGTTTCTTCCEEECCSCCCCEEC--T---------TTTTTCTTCCEEECTTSCCCEECSC-
T ss_pred CCcCEEECCC-CCccccChhhhccCCCccEEECCCCCCCcCC--H---------HHhCCCCCCCEEECCCCcCCccCcc-
Confidence 5677777777 5666665433477777777777777766332 4 5566777777777777777777766
Q ss_pred ccccCcEEEEE
Q 039375 88 LARKLERFKIS 98 (311)
Q Consensus 88 ~l~~L~~l~~~ 98 (311)
.+++|+.++++
T Consensus 119 ~l~~L~~L~Ls 129 (562)
T 3a79_B 119 PMASLRHLDLS 129 (562)
T ss_dssp CCTTCSEEECC
T ss_pred ccccCCEEECC
Confidence 66777777665
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.59 E-value=3.2e-14 Score=134.08 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=33.0
Q ss_pred ccCCCCCccEEecCCCCCCcc--cChhHHHhccccceEEeccccce
Q 039375 3 ALGQVTKLRLLDLRDCFHLKV--IAPNVISSLIRLEELCMGNCSVE 46 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~--lp~~i~~~L~~Lq~L~l~~~~~~ 46 (311)
.++++++|++|++++ +.+.. +|..+ +++++|++|++++|.+.
T Consensus 119 ~~~~l~~L~~L~L~~-n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 119 PIGHLKTLKELNVAH-NLIQSFKLPEYF-SNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp SCTTCTTCCEEECCS-SCCCCCCCCGGG-GGCTTCCEEECTTSCCC
T ss_pred cccccccccEEecCC-CccceecChhhh-cccCCCCEEeCcCCccc
Confidence 477888888888888 56654 57776 88888888888888765
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.58 E-value=2.3e-14 Score=125.48 Aligned_cols=217 Identities=15% Similarity=0.073 Sum_probs=143.4
Q ss_pred CCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccc
Q 039375 6 QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQE 85 (311)
Q Consensus 6 ~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~ 85 (311)
.+++|++|++++ +.++.+++..++++++|++|++++|.+. .+ ..++.+++|++|++++|.+..++.
T Consensus 32 ~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~------------~~~~~l~~L~~L~Ls~n~l~~l~~ 97 (317)
T 3o53_A 32 SAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLY-ET------------LDLESLSTLRTLDLNNNYVQELLV 97 (317)
T ss_dssp TGGGCSEEECTT-SCCCCCCHHHHTTCTTCCEEECTTSCCE-EE------------EEETTCTTCCEEECCSSEEEEEEE
T ss_pred cCCCCCEEECcC-CccCcCCHHHhhCCCcCCEEECCCCcCC-cc------------hhhhhcCCCCEEECcCCccccccC
Confidence 466899999999 6888887655599999999999999887 44 237788999999999888777764
Q ss_pred ccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375 86 GFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV 165 (311)
Q Consensus 86 ~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~ 165 (311)
. ++|+.++++.+. +.+ ++ ...++++ +.|.+..+ .++.+.......+++|+
T Consensus 98 ~---~~L~~L~l~~n~--l~~-~~--------------~~~~~~L---------~~L~l~~N-~l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 98 G---PSIETLHAANNN--ISR-VS--------------CSRGQGK---------KNIYLANN-KITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp C---TTCCEEECCSSC--CSE-EE--------------ECCCSSC---------EEEECCSS-CCCSGGGBCTGGGSSEE
T ss_pred C---CCcCEEECCCCc--cCC-cC--------------ccccCCC---------CEEECCCC-CCCCccchhhhccCCCC
Confidence 3 788888775322 111 00 0222333 34444332 12222111115567888
Q ss_pred eEEEec-eEecccccccCcccccccEEeCCCC-cccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEE
Q 039375 166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSS-SVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEV 243 (311)
Q Consensus 166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~ 243 (311)
.|++++ .+.... +.. ...+++|+.|++++| +++.+ .....+++|+.|++++|. +..+
T Consensus 148 ~L~Ls~N~l~~~~----------------~~~~~~~l~~L~~L~L~~N-~l~~~---~~~~~l~~L~~L~Ls~N~-l~~l 206 (317)
T 3o53_A 148 YLDLKLNEIDTVN----------------FAELAASSDTLEHLNLQYN-FIYDV---KGQVVFAKLKTLDLSSNK-LAFM 206 (317)
T ss_dssp EEECTTSCCCEEE----------------GGGGGGGTTTCCEEECTTS-CCCEE---ECCCCCTTCCEEECCSSC-CCEE
T ss_pred EEECCCCCCCccc----------------HHHHhhccCcCCEEECCCC-cCccc---ccccccccCCEEECCCCc-CCcc
Confidence 888865 111100 111 235789999999999 88874 223358999999999875 4444
Q ss_pred eccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCCCC
Q 039375 244 VINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKM 298 (311)
Q Consensus 244 ~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l 298 (311)
.. ....+++|++|.++++ .++.+.. ....+++|++|++++++--
T Consensus 207 ~~--------~~~~l~~L~~L~L~~N-~l~~l~~--~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 207 GP--------EFQSAAGVTWISLRNN-KLVLIEK--ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CG--------GGGGGTTCSEEECTTS-CCCEECT--TCCCCTTCCEEECTTCCCB
T ss_pred hh--------hhcccCcccEEECcCC-cccchhh--HhhcCCCCCEEEccCCCcc
Confidence 22 2356899999999987 5777743 4567899999999987643
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=133.07 Aligned_cols=206 Identities=16% Similarity=0.158 Sum_probs=134.8
Q ss_pred CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
..++++++|++|+|++ +.++.++++.+.++++|++|++++|.+. .+. + ..+..+++|+.|++++|.+.
T Consensus 82 ~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~---------~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELFDNRLT-TIP-N---------GAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp TTTSSCSSCCEEECCS-SCCCEECGGGGTTCSSCCEEECCSSCCS-SCC-T---------TTSCSCSSCCEEECCSCCCC
T ss_pred HHhhCCCCCCEEECCC-CcCCccChhhccCCccCCEEECCCCcCC-eeC-H---------hHhhccccCceeeCCCCccc
Confidence 5688999999999999 7889887665699999999999999987 552 2 46889999999999999998
Q ss_pred cccccc--ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccc
Q 039375 82 ILQEGF--LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQS 159 (311)
Q Consensus 82 ~lp~~~--~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~ 159 (311)
.++... .+++|+.+++..+. ....++.. .+ .++++++.+.+..+ ....+..+ .
T Consensus 150 ~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~-~~----------~~l~~L~~L~L~~n-------~l~~~~~~-----~ 204 (440)
T 3zyj_A 150 SIPSYAFNRIPSLRRLDLGELK--RLSYISEG-AF----------EGLSNLRYLNLAMC-------NLREIPNL-----T 204 (440)
T ss_dssp EECTTTTTTCTTCCEEECCCCT--TCCEECTT-TT----------TTCSSCCEEECTTS-------CCSSCCCC-----T
T ss_pred ccCHHHhhhCcccCEeCCCCCC--CcceeCcc-hh----------hcccccCeecCCCC-------cCcccccc-----C
Confidence 888744 38999999886322 22222110 11 44555666555443 01111111 5
Q ss_pred cccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCc
Q 039375 160 RITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCR 238 (311)
Q Consensus 160 ~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~ 238 (311)
.+++|+.|++++ .+... .+..+..+++|+.|++++| +++. ..+..+..+++|+.|++++|.
T Consensus 205 ~l~~L~~L~Ls~N~l~~~----------------~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAI----------------RPGSFQGLMHLQKLWMIQS-QIQV-IERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp TCSSCCEEECTTSCCCEE----------------CTTTTTTCTTCCEEECTTC-CCCE-ECTTSSTTCTTCCEEECTTSC
T ss_pred CCcccCEEECCCCccCcc----------------ChhhhccCccCCEEECCCC-ceeE-EChhhhcCCCCCCEEECCCCC
Confidence 677888888876 11111 1222445677777777777 7776 445666777778888877664
Q ss_pred CceEEeccCCcccccccccccccceeeccccc
Q 039375 239 AMTEVVINDKEGVDIEEIVFSKLKALILCDLD 270 (311)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~ 270 (311)
+..+... ....+++|+.|.+.+++
T Consensus 267 -l~~~~~~-------~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 267 -LTLLPHD-------LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -CCCCCTT-------TTSSCTTCCEEECCSSC
T ss_pred -CCccChh-------HhccccCCCEEEcCCCC
Confidence 3333211 12346677777776543
No 51
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=5.1e-14 Score=118.13 Aligned_cols=199 Identities=17% Similarity=0.093 Sum_probs=123.9
Q ss_pred CccEEecCCCCCCcccChhHHHhccccceEEecccc-ceeeeeccccccccccccccCCCCCccEEEEee-cCccccccc
Q 039375 9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCS-VEWEVERANTERSNASLDELMLLPWLTTLEIDV-KNDSILQEG 86 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~-~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~-~~~~~lp~~ 86 (311)
+|++|++++ +.++.+|+..++.+++|++|++++|. +. .+. + ..+..+++|++|++++ |.+..++..
T Consensus 32 ~l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~-~---------~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 32 STQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLE-S---------HSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp TCCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCC-EEC-T---------TTEESCTTCCEEEEEEETTCCEECTT
T ss_pred cccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcc-eeC-H---------hHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 688888888 67777776444788888888888886 65 552 2 4567778888888887 777777754
Q ss_pred c--ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccccccc
Q 039375 87 F--LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLT 164 (311)
Q Consensus 87 ~--~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L 164 (311)
. .+++|+.++++.+.. ..+| .+ ..+++|
T Consensus 100 ~f~~l~~L~~L~l~~n~l---~~lp---------------------------------------~~--------~~l~~L 129 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGL---KMFP---------------------------------------DL--------TKVYST 129 (239)
T ss_dssp SEECCTTCCEEEEEEECC---CSCC---------------------------------------CC--------TTCCBC
T ss_pred HhCCCCCCCEEeCCCCCC---cccc---------------------------------------cc--------cccccc
Confidence 3 367777777763320 0011 00 223333
Q ss_pred c---eEEEeceEecccccccCcccccccEEeCCCCcccccCcc-EEEEecCCCceeecCccccccCCCCCEEeeccCcCc
Q 039375 165 V---SLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLT-KLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAM 240 (311)
Q Consensus 165 ~---~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~-~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l 240 (311)
+ .|++++. ..+... .+..+..+++|+ .|+++++ +++. .+...+.. ++|+.|++++|..+
T Consensus 130 ~~L~~L~l~~N-~~l~~i-------------~~~~~~~l~~L~~~L~l~~n-~l~~-i~~~~~~~-~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 130 DIFFILEITDN-PYMTSI-------------PVNAFQGLCNETLTLKLYNN-GFTS-VQGYAFNG-TKLDAVYLNKNKYL 192 (239)
T ss_dssp CSEEEEEEESC-TTCCEE-------------CTTTTTTTBSSEEEEECCSC-CCCE-ECTTTTTT-CEEEEEECTTCTTC
T ss_pred ccccEEECCCC-cchhhc-------------CcccccchhcceeEEEcCCC-CCcc-cCHhhcCC-CCCCEEEcCCCCCc
Confidence 3 6666541 000000 011244577888 8999888 7776 44444444 78999999988656
Q ss_pred eEEeccCCcccccccccc-cccceeecccccccceeccCCceecCCCccEEEEecCCCC
Q 039375 241 TEVVINDKEGVDIEEIVF-SKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKM 298 (311)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~-~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l 298 (311)
+.+.... ...+ ++|++|++.++ .++.+.. ..+++|++|.+.++++|
T Consensus 193 ~~i~~~~-------~~~l~~~L~~L~l~~N-~l~~l~~----~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 193 TVIDKDA-------FGGVYSGPSLLDVSQT-SVTALPS----KGLEHLKELIARNTWTL 239 (239)
T ss_dssp CEECTTT-------TTTCSBCCSEEECTTC-CCCCCCC----TTCTTCSEEECTTC---
T ss_pred ccCCHHH-------hhccccCCcEEECCCC-ccccCCh----hHhccCceeeccCccCC
Confidence 6663311 2446 78888888874 4666632 26889999998888764
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.55 E-value=3.2e-14 Score=137.06 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=68.5
Q ss_pred CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
..++++++|++|++++ +.++.+|++.++++++|++|++++|.+. .+. | ..++.+++|++|+++.|...
T Consensus 67 ~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~-~---------~~~~~l~~L~~L~Ls~n~l~ 134 (680)
T 1ziw_A 67 ELCQKLPMLKVLNLQH-NELSQLSDKTFAFCTNLTELHLMSNSIQ-KIK-N---------NPFVKQKNLITLDLSHNGLS 134 (680)
T ss_dssp THHHHCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCC-CCC-S---------CTTTTCTTCCEEECCSSCCS
T ss_pred HHHhcccCcCEEECCC-CccCccChhhhccCCCCCEEECCCCccC-ccC-h---------hHccccCCCCEEECCCCccc
Confidence 4567899999999999 6888898864599999999999999887 442 4 56888999999999988866
Q ss_pred cccc-cc-ccccCcEEEEEe
Q 039375 82 ILQE-GF-LARKLERFKISI 99 (311)
Q Consensus 82 ~lp~-~~-~l~~L~~l~~~~ 99 (311)
..+. .+ .+++|+.++++.
T Consensus 135 ~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 135 STKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp CCCCCSSSCCTTCCEEECCS
T ss_pred ccCchhhcccccCCEEEccC
Confidence 5543 34 388899888763
No 53
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=1.6e-13 Score=121.80 Aligned_cols=221 Identities=18% Similarity=0.079 Sum_probs=135.5
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccE-EEEeecCccccccc
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTT-LEIDVKNDSILQEG 86 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~-L~l~~~~~~~lp~~ 86 (311)
+++++|+|++ +.|+.+|++.+++|++|++|++++|.+...++ + ..+..+++|.. +.+..|.+..++..
T Consensus 30 ~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~-~---------~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 30 RNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE-A---------DVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEEC-T---------TSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccC-h---------hHhhcchhhhhhhcccCCcccccCch
Confidence 5788899988 78888887655888899999999888764552 2 44567777765 44456777777654
Q ss_pred c-c-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccc-cc
Q 039375 87 F-L-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRI-TL 163 (311)
Q Consensus 87 ~-~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~-~~ 163 (311)
. . +++|+.++++.+... .+|... . ..... +..+.+..+..++.+.......+ ..
T Consensus 99 ~f~~l~~L~~L~l~~n~l~---~~~~~~-~----------~~~~~---------l~~l~l~~~~~i~~l~~~~f~~~~~~ 155 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIK---HLPDVH-K----------IHSLQ---------KVLLDIQDNINIHTIERNSFVGLSFE 155 (350)
T ss_dssp SBCCCTTCCEEEEEEECCS---SCCCCT-T----------CCBSS---------CEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred hhhhccccccccccccccc---cCCchh-h----------cccch---------hhhhhhccccccccccccchhhcchh
Confidence 3 3 788888888744311 111000 0 00111 23334444444444322111122 24
Q ss_pred cceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceE
Q 039375 164 TVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTE 242 (311)
Q Consensus 164 L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~ 242 (311)
++.|++++ .+..++ .......+|+.+.+.++..++. .+...+..+++|++|++++|. +..
T Consensus 156 l~~L~L~~N~i~~i~-----------------~~~f~~~~L~~l~l~~~n~l~~-i~~~~f~~l~~L~~LdLs~N~-l~~ 216 (350)
T 4ay9_X 156 SVILWLNKNGIQEIH-----------------NSAFNGTQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTR-IHS 216 (350)
T ss_dssp CEEEECCSSCCCEEC-----------------TTSSTTEEEEEEECTTCTTCCC-CCTTTTTTEECCSEEECTTSC-CCC
T ss_pred hhhhccccccccCCC-----------------hhhccccchhHHhhccCCcccC-CCHHHhccCcccchhhcCCCC-cCc
Confidence 56666654 111111 1122345788888877657777 555677888899999998764 555
Q ss_pred EeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEec
Q 039375 243 VVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIG 294 (311)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~ 294 (311)
+.. ..|.+|++|.+.++.+++.+.+ ...+++|+.+++.+
T Consensus 217 lp~----------~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 217 LPS----------YGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp CCS----------SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred cCh----------hhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 522 4578888888888888888743 45678888888754
No 54
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=6.8e-14 Score=120.97 Aligned_cols=201 Identities=15% Similarity=0.093 Sum_probs=123.7
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
.++++++++.+++++ +.++.+|.++ . .++++|++++|.+.... | ..+..+++|+.|+++.|.+..
T Consensus 5 ~~~~l~~l~~l~~~~-~~l~~ip~~~-~--~~l~~L~L~~N~l~~~~--~---------~~~~~l~~L~~L~L~~n~l~~ 69 (290)
T 1p9a_G 5 EVSKVASHLEVNCDK-RNLTALPPDL-P--KDTTILHLSENLLYTFS--L---------ATLMPYTRLTQLNLDRAELTK 69 (290)
T ss_dssp EEECSTTCCEEECTT-SCCSSCCSCC-C--TTCCEEECTTSCCSEEE--G---------GGGTTCTTCCEEECTTSCCCE
T ss_pred cccccCCccEEECCC-CCCCcCCCCC-C--CCCCEEEcCCCcCCccC--H---------HHhhcCCCCCEEECCCCccCc
Confidence 367899999999999 8899999876 4 68999999999987333 5 778899999999999999888
Q ss_pred cccccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccccc
Q 039375 83 LQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRIT 162 (311)
Q Consensus 83 lp~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~ 162 (311)
++....+++|+.++++.+. +..+|.. + ..+++++.+.+..+ .++.+.......++
T Consensus 70 ~~~~~~l~~L~~L~Ls~N~---l~~l~~~--~----------~~l~~L~~L~l~~N----------~l~~l~~~~~~~l~ 124 (290)
T 1p9a_G 70 LQVDGTLPVLGTLDLSHNQ---LQSLPLL--G----------QTLPALTVLDVSFN----------RLTSLPLGALRGLG 124 (290)
T ss_dssp EECCSCCTTCCEEECCSSC---CSSCCCC--T----------TTCTTCCEEECCSS----------CCCCCCSSTTTTCT
T ss_pred ccCCCCCCcCCEEECCCCc---CCcCchh--h----------ccCCCCCEEECCCC----------cCcccCHHHHcCCC
Confidence 8876568899998886332 1122211 1 33344444443322 11111111014455
Q ss_pred ccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCce
Q 039375 163 LTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMT 241 (311)
Q Consensus 163 ~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~ 241 (311)
+|+.|++++ .+...+ +..+..+++|+.|++++| +++. .+...+..+++|+.|++++|. +.
T Consensus 125 ~L~~L~L~~N~l~~~~----------------~~~~~~l~~L~~L~L~~N-~l~~-l~~~~~~~l~~L~~L~L~~N~-l~ 185 (290)
T 1p9a_G 125 ELQELYLKGNELKTLP----------------PGLLTPTPKLEKLSLANN-NLTE-LPAGLLNGLENLDTLLLQENS-LY 185 (290)
T ss_dssp TCCEEECTTSCCCCCC----------------TTTTTTCTTCCEEECTTS-CCSC-CCTTTTTTCTTCCEEECCSSC-CC
T ss_pred CCCEEECCCCCCCccC----------------hhhcccccCCCEEECCCC-cCCc-cCHHHhcCcCCCCEEECCCCc-CC
Confidence 666666654 111110 111334567777777777 6666 444555667777777777654 33
Q ss_pred EEeccCCcccccccccccccceeeccccc
Q 039375 242 EVVINDKEGVDIEEIVFSKLKALILCDLD 270 (311)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~L~~L~i~~~~ 270 (311)
.+. .....++.|+.+.+.+.+
T Consensus 186 ~ip--------~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 186 TIP--------KGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCC--------TTTTTTCCCSEEECCSCC
T ss_pred ccC--------hhhcccccCCeEEeCCCC
Confidence 331 112334566666666543
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.52 E-value=2.4e-13 Score=129.12 Aligned_cols=76 Identities=24% Similarity=0.254 Sum_probs=54.8
Q ss_pred ccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCC
Q 039375 200 FRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSAN 279 (311)
Q Consensus 200 l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~ 279 (311)
+++|+.|++++| +++.+ + ..+++|+.|++++|. +..+. ..+++|++|.++++ .++.+. .
T Consensus 220 ~~~L~~L~Ls~N-~L~~l-p----~~l~~L~~L~Ls~N~-L~~lp-----------~~~~~L~~L~Ls~N-~L~~lp--~ 278 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTSL-P----VLPSELKELMVSGNR-LTSLP-----------MLPSGLLSLSVYRN-QLTRLP--E 278 (622)
T ss_dssp CTTCCEEECCSS-CCSCC-C----CCCTTCCEEECCSSC-CSCCC-----------CCCTTCCEEECCSS-CCCSCC--G
T ss_pred CCCCCEEEccCC-ccCcC-C----CCCCcCcEEECCCCC-CCcCC-----------cccccCcEEeCCCC-CCCcCC--H
Confidence 467888888888 77762 2 456788888888764 44441 24678999999887 466663 3
Q ss_pred ceecCCCccEEEEecCC
Q 039375 280 YTFKFPSLEYLEVIGCP 296 (311)
Q Consensus 280 ~~~~~~~L~~L~i~~c~ 296 (311)
....+++|+.|++.+++
T Consensus 279 ~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp GGGGSCTTCEEECCSCC
T ss_pred HHhhccccCEEEecCCC
Confidence 56678999999998875
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.51 E-value=6.9e-14 Score=121.66 Aligned_cols=203 Identities=19% Similarity=0.117 Sum_probs=136.5
Q ss_pred cCCCCCccEEecCCCCCCccc---ChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVI---APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~l---p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
++++++|++|++++ +.++.+ |..+ ..+++|++|++++|.+. .+ | ..+..+++|++|+++.|.+
T Consensus 48 ~~~l~~L~~L~L~~-n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~-~l--~---------~~~~~l~~L~~L~l~~n~l 113 (306)
T 2z66_A 48 FDKLTQLTKLSLSS-NGLSFKGCCSQSD-FGTTSLKYLDLSFNGVI-TM--S---------SNFLGLEQLEHLDFQHSNL 113 (306)
T ss_dssp TTTCTTCSEEECCS-SCCCEEEEEEHHH-HSCSCCCEEECCSCSEE-EE--E---------EEEETCTTCCEEECTTSEE
T ss_pred hhccccCCEEECCC-CccCcccCccccc-ccccccCEEECCCCccc-cC--h---------hhcCCCCCCCEEECCCCcc
Confidence 68899999999999 677755 5666 78999999999999987 66 5 6788999999999999888
Q ss_pred ccccc--cc-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcce-eccc
Q 039375 81 SILQE--GF-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINN-VEYI 156 (311)
Q Consensus 81 ~~lp~--~~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~-~~~~ 156 (311)
..++. .+ .+++|+.++++.+. .....+. .+ ..+++++.+.+.++ . ++. ....
T Consensus 114 ~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~--~~----------~~l~~L~~L~l~~n---------~-l~~~~~~~ 169 (306)
T 2z66_A 114 KQMSEFSVFLSLRNLIYLDISHTH--TRVAFNG--IF----------NGLSSLEVLKMAGN---------S-FQENFLPD 169 (306)
T ss_dssp ESSTTTTTTTTCTTCCEEECTTSC--CEECSTT--TT----------TTCTTCCEEECTTC---------E-EGGGEECS
T ss_pred cccccchhhhhccCCCEEECCCCc--CCccchh--hc----------ccCcCCCEEECCCC---------c-cccccchh
Confidence 87765 33 38899999875322 2211111 11 34455555555432 1 111 0011
Q ss_pred ccccccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeec
Q 039375 157 SQSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVY 235 (311)
Q Consensus 157 ~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~ 235 (311)
....+++|+.|++++ .+.. ..+.....+++|+.|++++| ++++ .+...+..+++|+.|+++
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~----------------~~~~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQ----------------LSPTAFNSLSSLQVLNMSHN-NFFS-LDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCE----------------ECTTTTTTCTTCCEEECTTS-CCSB-CCSGGGTTCTTCCEEECT
T ss_pred HHhhCcCCCEEECCCCCcCC----------------cCHHHhcCCCCCCEEECCCC-ccCc-cChhhccCcccCCEeECC
Confidence 116677899999876 1111 11233556789999999999 7877 455567888999999999
Q ss_pred cCcCceEEeccCCccccccccccc-ccceeeccccc
Q 039375 236 GCRAMTEVVINDKEGVDIEEIVFS-KLKALILCDLD 270 (311)
Q Consensus 236 ~c~~l~~~~~~~~~~~~~~~~~~~-~L~~L~i~~~~ 270 (311)
+|...+.. . .....++ +|++|.+.+++
T Consensus 232 ~N~l~~~~-~-------~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 232 LNHIMTSK-K-------QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TSCCCBCS-S-------SSCCCCCTTCCEEECTTCC
T ss_pred CCCCcccC-H-------HHHHhhhccCCEEEccCCC
Confidence 87643322 1 1124454 78899888764
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.51 E-value=3.6e-14 Score=133.23 Aligned_cols=83 Identities=19% Similarity=0.278 Sum_probs=52.9
Q ss_pred cCCCCCccEEecCCCCCCcc--cChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 4 LGQVTKLRLLDLRDCFHLKV--IAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~--lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
++++++|++|++++ +.++. +|..+ +++++|++|++++|.....+. + ..++.+++|+.|+++.|...
T Consensus 94 ~~~l~~L~~L~Ls~-n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~-~---------~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 94 FGPLSSLKYLNLMG-NPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIR-R---------IDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp HTTCTTCCEEECTT-CCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEEC-T---------TTTTTCCEEEEEEEEETTCC
T ss_pred hccCCCCcEEECCC-Ccccccchhhhh-hccCCccEEECCCCccccccC-H---------hhhhcccccCeeeccCCccc
Confidence 67788888888888 56663 35555 788888888888887433442 2 45666777777777766644
Q ss_pred c-cccccc-cccCcEEEEE
Q 039375 82 I-LQEGFL-ARKLERFKIS 98 (311)
Q Consensus 82 ~-lp~~~~-l~~L~~l~~~ 98 (311)
. .|..+. +++|+.+++.
T Consensus 162 ~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp EECTTTTTTCSEEEEEEEE
T ss_pred ccChhhhhccccCceEecc
Confidence 3 344442 4555555554
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=6.2e-14 Score=129.93 Aligned_cols=216 Identities=16% Similarity=0.073 Sum_probs=146.1
Q ss_pred CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375 7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG 86 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~ 86 (311)
.++|++|+|++ +.++.+++..++.+++|++|++++|.+. .. + . ++.+++|+.|++++|.+..+|..
T Consensus 33 ~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~--~---------~-l~~l~~L~~L~Ls~N~l~~l~~~ 98 (487)
T 3oja_A 33 AWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLY-ET--L---------D-LESLSTLRTLDLNNNYVQELLVG 98 (487)
T ss_dssp GGGCCEEECCS-SCCCCCCGGGGTTCTTCCEEECTTSCCE-EE--E---------E-CTTCTTCCEEECCSSEEEEEEEC
T ss_pred CCCccEEEeeC-CcCCCCCHHHHhCCCCCCEEEeeCCCCC-CC--c---------c-cccCCCCCEEEecCCcCCCCCCC
Confidence 34899999999 6888786544599999999999999987 34 2 3 78899999999999988877754
Q ss_pred cccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccce
Q 039375 87 FLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVS 166 (311)
Q Consensus 87 ~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~ 166 (311)
++|+.++++.+. +.+ ++ ...++++ +.|.+..+. ++.........+++|+.
T Consensus 99 ---~~L~~L~L~~N~--l~~-~~--------------~~~l~~L---------~~L~L~~N~-l~~~~~~~~~~l~~L~~ 148 (487)
T 3oja_A 99 ---PSIETLHAANNN--ISR-VS--------------CSRGQGK---------KNIYLANNK-ITMLRDLDEGCRSRVQY 148 (487)
T ss_dssp ---TTCCEEECCSSC--CCC-EE--------------ECCCSSC---------EEEECCSSC-CCSGGGBCGGGGSSEEE
T ss_pred ---CCcCEEECcCCc--CCC-CC--------------ccccCCC---------CEEECCCCC-CCCCCchhhcCCCCCCE
Confidence 788888876332 111 00 0222333 444444321 22221111155778888
Q ss_pred EEEec-eEecccccccCcccccccEEeCCCCc-ccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEe
Q 039375 167 LFIRR-GIFNGRMLRETFEEVGNDKILLPSSS-VSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVV 244 (311)
Q Consensus 167 L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~-~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~ 244 (311)
|++++ .+... .+... ..+++|+.|++++| .++++ .....+++|+.|++++|. +..+.
T Consensus 149 L~Ls~N~l~~~----------------~~~~l~~~l~~L~~L~Ls~N-~l~~~---~~~~~l~~L~~L~Ls~N~-l~~~~ 207 (487)
T 3oja_A 149 LDLKLNEIDTV----------------NFAELAASSDTLEHLNLQYN-FIYDV---KGQVVFAKLKTLDLSSNK-LAFMG 207 (487)
T ss_dssp EECTTSCCCEE----------------EGGGGGGGTTTCCEEECTTS-CCCEE---ECCCCCTTCCEEECCSSC-CCEEC
T ss_pred EECCCCCCCCc----------------ChHHHhhhCCcccEEecCCC-ccccc---cccccCCCCCEEECCCCC-CCCCC
Confidence 88875 11110 01112 25789999999999 88874 223468999999999876 44442
Q ss_pred ccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCCCC
Q 039375 245 INDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKM 298 (311)
Q Consensus 245 ~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l 298 (311)
. ....+++|+.|+++++ .+..+.. ....+++|+.|++.+++-.
T Consensus 208 ~--------~~~~l~~L~~L~Ls~N-~l~~lp~--~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 208 P--------EFQSAAGVTWISLRNN-KLVLIEK--ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp G--------GGGGGTTCSEEECTTS-CCCEECT--TCCCCTTCCEEECTTCCBC
T ss_pred H--------hHcCCCCccEEEecCC-cCcccch--hhccCCCCCEEEcCCCCCc
Confidence 2 2357899999999986 4777743 4567899999999987644
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.50 E-value=7.7e-14 Score=120.15 Aligned_cols=184 Identities=17% Similarity=0.176 Sum_probs=118.8
Q ss_pred CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEecccc-ceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCS-VEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~-~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
..++++++|++|++++ +.++.+++..++++++|++|++++|. +. .+. | ..+..+++|++|++++|.+
T Consensus 50 ~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~-~---------~~~~~l~~L~~L~l~~n~l 117 (285)
T 1ozn_A 50 ASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLR-SVD-P---------ATFHGLGRLHTLHLDRCGL 117 (285)
T ss_dssp TTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCTTCC-CCC-T---------TTTTTCTTCCEEECTTSCC
T ss_pred HHcccCCCCCEEECCC-CccceeCHhhcCCccCCCEEeCCCCCCcc-ccC-H---------HHhcCCcCCCEEECCCCcC
Confidence 4588999999999999 68887844334999999999999997 65 432 4 6788999999999999998
Q ss_pred ccccc-ccc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc
Q 039375 81 SILQE-GFL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ 158 (311)
Q Consensus 81 ~~lp~-~~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~ 158 (311)
..++. .+. +++|+.++++.+. + ..++.. .+ +.+++++.+.+.++ .++.+.....
T Consensus 118 ~~~~~~~~~~l~~L~~L~l~~n~--l-~~~~~~-~~----------~~l~~L~~L~l~~n----------~l~~~~~~~~ 173 (285)
T 1ozn_A 118 QELGPGLFRGLAALQYLYLQDNA--L-QALPDD-TF----------RDLGNLTHLFLHGN----------RISSVPERAF 173 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC--C-CCCCTT-TT----------TTCTTCCEEECCSS----------CCCEECTTTT
T ss_pred CEECHhHhhCCcCCCEEECCCCc--c-cccCHh-Hh----------ccCCCccEEECCCC----------cccccCHHHh
Confidence 77754 343 8899999876332 1 111100 01 33444444444332 1222211111
Q ss_pred ccccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccC
Q 039375 159 SRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGC 237 (311)
Q Consensus 159 ~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c 237 (311)
..+++|+.|++++ .+.. ..+.....+++|+.|++++| ++++ .++..+..+++|+.|++++|
T Consensus 174 ~~l~~L~~L~l~~n~l~~----------------~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAH----------------VHPHAFRDLGRLMTLYLFAN-NLSA-LPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp TTCTTCCEEECCSSCCCE----------------ECTTTTTTCTTCCEEECCSS-CCSC-CCHHHHTTCTTCCEEECCSS
T ss_pred cCccccCEEECCCCcccc----------------cCHhHccCcccccEeeCCCC-cCCc-CCHHHcccCcccCEEeccCC
Confidence 4566777777765 1110 11223455678888888888 7776 45556777888888888877
Q ss_pred cC
Q 039375 238 RA 239 (311)
Q Consensus 238 ~~ 239 (311)
+.
T Consensus 236 ~~ 237 (285)
T 1ozn_A 236 PW 237 (285)
T ss_dssp CE
T ss_pred Cc
Confidence 64
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.49 E-value=1.9e-13 Score=116.86 Aligned_cols=197 Identities=17% Similarity=0.168 Sum_probs=116.5
Q ss_pred CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccc
Q 039375 9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFL 88 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~ 88 (311)
+.+++++++ +.++.+|..+ . .+|++|++++|.+. .+. + ..++.+++|++|+++.|.+..+|..+.
T Consensus 17 ~~~~l~~~~-~~l~~ip~~~-~--~~l~~L~l~~n~l~-~~~-~---------~~~~~l~~L~~L~l~~n~l~~i~~~~~ 81 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAIPSNI-P--ADTKKLDLQSNKLS-SLP-S---------KAFHRLTKLRLLYLNDNKLQTLPAGIF 81 (270)
T ss_dssp TTTEEECTT-SCCSSCCSCC-C--TTCSEEECCSSCCS-CCC-T---------TSSSSCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCCEEEccC-CCCCccCCCC-C--CCCCEEECcCCCCC-eeC-H---------HHhcCCCCCCEEECCCCccCeeChhhh
Confidence 578889988 7888888765 3 57899999999887 442 3 567888999999998888888887652
Q ss_pred --cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccce
Q 039375 89 --ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVS 166 (311)
Q Consensus 89 --l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~ 166 (311)
+++|+.++++.+. +..+|.. .+ ..+++++.+.+.++ .++.+.......+++|++
T Consensus 82 ~~l~~L~~L~l~~n~---l~~~~~~-~~----------~~l~~L~~L~l~~n----------~l~~~~~~~~~~l~~L~~ 137 (270)
T 2o6q_A 82 KELKNLETLWVTDNK---LQALPIG-VF----------DQLVNLAELRLDRN----------QLKSLPPRVFDSLTKLTY 137 (270)
T ss_dssp SSCTTCCEEECCSSC---CCCCCTT-TT----------TTCSSCCEEECCSS----------CCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCc---CCcCCHh-Hc----------ccccCCCEEECCCC----------ccCeeCHHHhCcCcCCCE
Confidence 7888888775322 1111100 01 23334444333221 111111111145667777
Q ss_pred EEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEec
Q 039375 167 LFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVI 245 (311)
Q Consensus 167 L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 245 (311)
|++++ .+...+ +..+..+++|+.|++++| +++. .++..+..+++|++|++++|. +..+..
T Consensus 138 L~Ls~n~l~~~~----------------~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 198 (270)
T 2o6q_A 138 LSLGYNELQSLP----------------KGVFDKLTSLKELRLYNN-QLKR-VPEGAFDKLTELKTLKLDNNQ-LKRVPE 198 (270)
T ss_dssp EECCSSCCCCCC----------------TTTTTTCTTCCEEECCSS-CCSC-CCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred EECCCCcCCccC----------------HhHccCCcccceeEecCC-cCcE-eChhHhccCCCcCEEECCCCc-CCcCCH
Confidence 77765 111110 111345677788888777 6766 444556677778888887664 333321
Q ss_pred cCCcccccccccccccceeeccccc
Q 039375 246 NDKEGVDIEEIVFSKLKALILCDLD 270 (311)
Q Consensus 246 ~~~~~~~~~~~~~~~L~~L~i~~~~ 270 (311)
.....+++|+.|.+.+++
T Consensus 199 -------~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 199 -------GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -------TTTTTCTTCCEEECCSSC
T ss_pred -------HHhccccCCCEEEecCCC
Confidence 112346677777776654
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=9.4e-14 Score=121.12 Aligned_cols=191 Identities=17% Similarity=0.142 Sum_probs=123.4
Q ss_pred CCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375 5 GQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ 84 (311)
Q Consensus 5 ~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp 84 (311)
.++.+|++|++++ +.++.+|. + ..+++|++|++++|.+. .+ + . ++.+++|+.|++++|.+..++
T Consensus 38 ~~l~~L~~L~l~~-~~i~~l~~-~-~~l~~L~~L~L~~n~i~-~~--~---------~-~~~l~~L~~L~L~~n~l~~~~ 101 (308)
T 1h6u_A 38 ADLDGITTLSAFG-TGVTTIEG-V-QYLNNLIGLELKDNQIT-DL--A---------P-LKNLTKITELELSGNPLKNVS 101 (308)
T ss_dssp HHHHTCCEEECTT-SCCCCCTT-G-GGCTTCCEEECCSSCCC-CC--G---------G-GTTCCSCCEEECCSCCCSCCG
T ss_pred HHcCCcCEEEeeC-CCccCchh-h-hccCCCCEEEccCCcCC-CC--h---------h-HccCCCCCEEEccCCcCCCch
Confidence 4578999999999 57888874 4 99999999999999887 55 3 3 889999999999999988887
Q ss_pred cccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccccccc
Q 039375 85 EGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLT 164 (311)
Q Consensus 85 ~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L 164 (311)
....+++|+.++++.+. +..++ .+ ..+++++.+.+..+ .++.+.. ...+++|
T Consensus 102 ~~~~l~~L~~L~l~~n~---l~~~~---~l----------~~l~~L~~L~l~~n----------~l~~~~~--l~~l~~L 153 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQ---ITDVT---PL----------AGLSNLQVLYLDLN----------QITNISP--LAGLTNL 153 (308)
T ss_dssp GGTTCTTCCEEECTTSC---CCCCG---GG----------TTCTTCCEEECCSS----------CCCCCGG--GGGCTTC
T ss_pred hhcCCCCCCEEECCCCC---CCCch---hh----------cCCCCCCEEECCCC----------ccCcCcc--ccCCCCc
Confidence 54458899998875322 11111 11 33444444444322 1111110 1556677
Q ss_pred ceEEEeceEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEe
Q 039375 165 VSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVV 244 (311)
Q Consensus 165 ~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~ 244 (311)
+.|++++. .+... .....+++|+.|++++| +++++ + .+..+++|+.|++++|.. ..+.
T Consensus 154 ~~L~l~~n--~l~~~---------------~~l~~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L~~L~L~~N~l-~~~~ 211 (308)
T 1h6u_A 154 QYLSIGNA--QVSDL---------------TPLANLSKLTTLKADDN-KISDI-S--PLASLPNLIEVHLKNNQI-SDVS 211 (308)
T ss_dssp CEEECCSS--CCCCC---------------GGGTTCTTCCEEECCSS-CCCCC-G--GGGGCTTCCEEECTTSCC-CBCG
T ss_pred cEEEccCC--cCCCC---------------hhhcCCCCCCEEECCCC-ccCcC-h--hhcCCCCCCEEEccCCcc-Cccc
Confidence 77777651 01000 01345678888888888 77763 2 267788888888887653 3321
Q ss_pred ccCCcccccccccccccceeeccccc
Q 039375 245 INDKEGVDIEEIVFSKLKALILCDLD 270 (311)
Q Consensus 245 ~~~~~~~~~~~~~~~~L~~L~i~~~~ 270 (311)
. ...+++|++|.+.+++
T Consensus 212 ~---------l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 212 P---------LANTSNLFIVTLTNQT 228 (308)
T ss_dssp G---------GTTCTTCCEEEEEEEE
T ss_pred c---------ccCCCCCCEEEccCCe
Confidence 1 2457778888887764
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.49 E-value=1e-12 Score=125.09 Aligned_cols=86 Identities=15% Similarity=0.079 Sum_probs=49.5
Q ss_pred ccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCC
Q 039375 200 FRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSAN 279 (311)
Q Consensus 200 l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~ 279 (311)
+++++.|++++|..... ..+..+..+++|++|++++|. +..+.. .....+++|++|.++++ +++.+.+.
T Consensus 468 ~~~L~~L~Ls~N~~~~~-~~~~~~~~l~~L~~L~Ls~N~-L~~l~~-------~~f~~l~~L~~L~Ls~N-~l~~l~~~- 536 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQEN-FLPDIFTELRNLTFLDLSQCQ-LEQLSP-------TAFNSLSSLQVLNMSHN-NFFSLDTF- 536 (635)
T ss_dssp CTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTTSC-CCEECT-------TTTTTCTTCCEEECTTS-CCCBCCCG-
T ss_pred chhhhhhhhhhcccccc-cCchhhhhccccCEEECCCCc-cCCcCh-------HHHcCCCCCCEEECCCC-cCCCCChh-
Confidence 44556666665522332 233455666667777776653 333322 12345777888888876 45555321
Q ss_pred ceecCCCccEEEEecCC
Q 039375 280 YTFKFPSLEYLEVIGCP 296 (311)
Q Consensus 280 ~~~~~~~L~~L~i~~c~ 296 (311)
.+..+++|++|+++++.
T Consensus 537 ~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 537 PYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp GGTTCTTCCEEECTTSC
T ss_pred HHhCCCCCCEEECCCCc
Confidence 23467888888888763
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=123.00 Aligned_cols=86 Identities=23% Similarity=0.185 Sum_probs=69.1
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
.++++++|++|++++ +.++.++++.++++++|++|++++|.+. .+. + ..++.+++|++|++++|.+..
T Consensus 71 ~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-~---------~~~~~l~~L~~L~L~~n~l~~ 138 (353)
T 2z80_A 71 DLQRCVNLQALVLTS-NGINTIEEDSFSSLGSLEHLDLSYNYLS-NLS-S---------SWFKPLSSLTFLNLLGNPYKT 138 (353)
T ss_dssp TTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCS-SCC-H---------HHHTTCTTCSEEECTTCCCSS
T ss_pred HhccCCCCCEEECCC-CccCccCHhhcCCCCCCCEEECCCCcCC-cCC-H---------hHhCCCccCCEEECCCCCCcc
Confidence 578899999999999 6888776554499999999999999887 551 2 337889999999999988888
Q ss_pred ccc--cc-ccccCcEEEEEec
Q 039375 83 LQE--GF-LARKLERFKISIG 100 (311)
Q Consensus 83 lp~--~~-~l~~L~~l~~~~~ 100 (311)
+|. .+ .+++|+.++++.+
T Consensus 139 l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 139 LGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp SCSSCSCTTCTTCCEEEEEES
T ss_pred cCchhhhccCCCCcEEECCCC
Confidence 887 34 3889999988754
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=1.5e-13 Score=117.55 Aligned_cols=178 Identities=17% Similarity=0.164 Sum_probs=123.3
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF 87 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~ 87 (311)
.+|++|++++ +.++.+|+..++++++|++|++++|.+. .+. + ..++.+++|++|+++.|.+..+|...
T Consensus 37 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~-~---------~~~~~l~~L~~L~l~~n~l~~~~~~~ 104 (270)
T 2o6q_A 37 ADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP-A---------GIFKELKNLETLWVTDNKLQALPIGV 104 (270)
T ss_dssp TTCSEEECCS-SCCSCCCTTSSSSCTTCCEEECCSSCCS-CCC-T---------TTTSSCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCEEECcC-CCCCeeCHHHhcCCCCCCEEECCCCccC-eeC-h---------hhhcCCCCCCEEECCCCcCCcCCHhH
Confidence 5799999999 6888888754599999999999999987 552 2 34578999999999999988888755
Q ss_pred --ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375 88 --LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV 165 (311)
Q Consensus 88 --~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~ 165 (311)
.+++|+.++++.+. + ..++.. .+ +.+++++.+.+..+ .++.+.......+++|+
T Consensus 105 ~~~l~~L~~L~l~~n~--l-~~~~~~-~~----------~~l~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQ--L-KSLPPR-VF----------DSLTKLTYLSLGYN----------ELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp TTTCSSCCEEECCSSC--C-CCCCTT-TT----------TTCTTCCEEECCSS----------CCCCCCTTTTTTCTTCC
T ss_pred cccccCCCEEECCCCc--c-CeeCHH-Hh----------CcCcCCCEEECCCC----------cCCccCHhHccCCcccc
Confidence 38899999886332 1 111100 11 44555555555432 12222111115678899
Q ss_pred eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375 166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA 239 (311)
Q Consensus 166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~ 239 (311)
.|++++ .+.... +..+..+++|+.|++++| +++. .+...+..+++|+.|++++|+.
T Consensus 161 ~L~L~~n~l~~~~----------------~~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 161 ELRLYNNQLKRVP----------------EGAFDKLTELKTLKLDNN-QLKR-VPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EEECCSSCCSCCC----------------TTTTTTCTTCCEEECCSS-CCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred eeEecCCcCcEeC----------------hhHhccCCCcCEEECCCC-cCCc-CCHHHhccccCCCEEEecCCCe
Confidence 999876 111111 112456789999999999 8887 5666788899999999998874
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.48 E-value=1.8e-14 Score=126.15 Aligned_cols=78 Identities=26% Similarity=0.214 Sum_probs=62.0
Q ss_pred CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
..++.+++|++|++++ +.+..+++ + +.+++|++|++++|.+. .+ + ..++|+.|+++.|.+.
T Consensus 52 ~~~~~l~~L~~L~Ls~-n~l~~~~~-~-~~l~~L~~L~Ls~n~l~-~l--~-------------~~~~L~~L~l~~n~l~ 112 (317)
T 3o53_A 52 ADLAPFTKLELLNLSS-NVLYETLD-L-ESLSTLRTLDLNNNYVQ-EL--L-------------VGPSIETLHAANNNIS 112 (317)
T ss_dssp HHHTTCTTCCEEECTT-SCCEEEEE-E-TTCTTCCEEECCSSEEE-EE--E-------------ECTTCCEEECCSSCCS
T ss_pred HHhhCCCcCCEEECCC-CcCCcchh-h-hhcCCCCEEECcCCccc-cc--c-------------CCCCcCEEECCCCccC
Confidence 3578899999999999 67877766 4 99999999999999886 44 2 3378899999888877
Q ss_pred ccccccccccCcEEEEEe
Q 039375 82 ILQEGFLARKLERFKISI 99 (311)
Q Consensus 82 ~lp~~~~l~~L~~l~~~~ 99 (311)
.++... +++|+.++++.
T Consensus 113 ~~~~~~-~~~L~~L~l~~ 129 (317)
T 3o53_A 113 RVSCSR-GQGKKNIYLAN 129 (317)
T ss_dssp EEEECC-CSSCEEEECCS
T ss_pred CcCccc-cCCCCEEECCC
Confidence 776543 57788887753
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.48 E-value=2.2e-13 Score=114.19 Aligned_cols=182 Identities=13% Similarity=0.090 Sum_probs=123.0
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEecc-ccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGN-CSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~-~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
.++.+++|++|++++|..++.+|+..++++++|++|++++ |.+. .+. + ..+..+++|+.|+++.|.+.
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~-~---------~~f~~l~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YID-P---------DALKELPLLKFLGIFNTGLK 118 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EEC-T---------TSEECCTTCCEEEEEEECCC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcC-H---------HHhCCCCCCCEEeCCCCCCc
Confidence 5788999999999995459999875459999999999999 8887 552 3 56788999999999999988
Q ss_pred ccccccccccCc---EEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc
Q 039375 82 ILQEGFLARKLE---RFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ 158 (311)
Q Consensus 82 ~lp~~~~l~~L~---~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~ 158 (311)
.+|....+.+|+ .++++.+. .++.+.....
T Consensus 119 ~lp~~~~l~~L~~L~~L~l~~N~-----------------------------------------------~l~~i~~~~~ 151 (239)
T 2xwt_C 119 MFPDLTKVYSTDIFFILEITDNP-----------------------------------------------YMTSIPVNAF 151 (239)
T ss_dssp SCCCCTTCCBCCSEEEEEEESCT-----------------------------------------------TCCEECTTTT
T ss_pred cccccccccccccccEEECCCCc-----------------------------------------------chhhcCcccc
Confidence 898733466666 66665220 0111100000
Q ss_pred ccccccc-eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccC-CCCCEEeec
Q 039375 159 SRITLTV-SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTL-VRLVTVQVY 235 (311)
Q Consensus 159 ~~~~~L~-~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l-~~L~~L~l~ 235 (311)
..+++|+ .|++++ .+..++ ......++|+.|++++|+.++. .++..+..+ ++|+.|+++
T Consensus 152 ~~l~~L~~~L~l~~n~l~~i~-----------------~~~~~~~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 152 QGLCNETLTLKLYNNGFTSVQ-----------------GYAFNGTKLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp TTTBSSEEEEECCSCCCCEEC-----------------TTTTTTCEEEEEECTTCTTCCE-ECTTTTTTCSBCCSEEECT
T ss_pred cchhcceeEEEcCCCCCcccC-----------------HhhcCCCCCCEEEcCCCCCccc-CCHHHhhccccCCcEEECC
Confidence 3455666 666654 111111 0111126799999999944887 555677888 999999999
Q ss_pred cCcCceEEeccCCcccccccccccccceeecccccc
Q 039375 236 GCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDS 271 (311)
Q Consensus 236 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~ 271 (311)
++. +..+.. ..|++|+.|.+.++..
T Consensus 214 ~N~-l~~l~~----------~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 214 QTS-VTALPS----------KGLEHLKELIARNTWT 238 (239)
T ss_dssp TCC-CCCCCC----------TTCTTCSEEECTTC--
T ss_pred CCc-cccCCh----------hHhccCceeeccCccC
Confidence 765 444421 3688899998887654
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.47 E-value=2.6e-13 Score=116.29 Aligned_cols=198 Identities=19% Similarity=0.167 Sum_probs=115.3
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG- 86 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~- 86 (311)
++|++|++++ +.++.+++..++++++|++|++++|.+. .+. + ..++.+++|++|++++|.+..++..
T Consensus 28 ~~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~---------~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE-D---------GAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp TTCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTCCCC-EEC-T---------TTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCccEEECCC-CcccccCHhHhccccCCcEEECCCCcCC-ccC-H---------HHccCCcCCCEEECCCCccCccChhh
Confidence 4688999998 6788887644488899999999998887 442 3 5678888999999988887776643
Q ss_pred c-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375 87 F-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV 165 (311)
Q Consensus 87 ~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~ 165 (311)
+ .+++|+.+++..+. . .. +....+ ..+++|+
T Consensus 96 ~~~l~~L~~L~l~~n~--l-~~------------------------------------------~~~~~~---~~l~~L~ 127 (276)
T 2z62_A 96 FSGLSSLQKLVAVETN--L-AS------------------------------------------LENFPI---GHLKTLK 127 (276)
T ss_dssp TTTCTTCCEEECTTSC--C-CC------------------------------------------STTCCC---TTCTTCC
T ss_pred hcCCccccEEECCCCC--c-cc------------------------------------------cCchhc---ccCCCCC
Confidence 3 26777777654211 0 00 000000 3455666
Q ss_pred eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCC----EEeeccCcCc
Q 039375 166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLV----TVQVYGCRAM 240 (311)
Q Consensus 166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~----~L~l~~c~~l 240 (311)
+|++++ .+... ..|.....+++|+.|++++| ++++ .++..+..+++|+ .|++++|. +
T Consensus 128 ~L~l~~n~l~~~---------------~l~~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~l~l~L~ls~n~-l 189 (276)
T 2z62_A 128 ELNVAHNLIQSF---------------KLPEYFSNLTNLEHLDLSSN-KIQS-IYCTDLRVLHQMPLLNLSLDLSLNP-M 189 (276)
T ss_dssp EEECCSSCCCCC---------------CCCGGGGGCTTCCEEECCSS-CCCE-ECGGGGHHHHTCTTCCEEEECCSSC-C
T ss_pred EEECcCCcccee---------------cCchhhccCCCCCEEECCCC-CCCc-CCHHHhhhhhhccccceeeecCCCc-c
Confidence 666654 11000 00122445667777777777 6666 3444455555555 67776554 3
Q ss_pred eEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEe
Q 039375 241 TEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVI 293 (311)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~ 293 (311)
..+... .....+|++|.++++. ++.+... ....+++|++|++.
T Consensus 190 ~~~~~~--------~~~~~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 190 NFIQPG--------AFKEIRLKELALDTNQ-LKSVPDG-IFDRLTSLQKIWLH 232 (276)
T ss_dssp CEECTT--------SSCSCCEEEEECCSSC-CSCCCTT-TTTTCCSCCEEECC
T ss_pred cccCcc--------ccCCCcccEEECCCCc-eeecCHh-HhcccccccEEEcc
Confidence 333211 1123367777777654 5555321 22456777777776
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.46 E-value=6.9e-14 Score=119.75 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=62.1
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL 83 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l 83 (311)
...+.+|+.|++++ +.++.++. ++.+++|++|++++|.+. .+ ..++.+++|++|++++|.+..+
T Consensus 37 ~~~l~~L~~L~l~~-~~i~~~~~--l~~l~~L~~L~l~~n~l~-~~------------~~l~~l~~L~~L~L~~n~l~~~ 100 (272)
T 3rfs_A 37 QNELNSIDQIIANN-SDIKSVQG--IQYLPNVRYLALGGNKLH-DI------------SALKELTNLTYLILTGNQLQSL 100 (272)
T ss_dssp HHHHTTCCEEECTT-SCCCCCTT--GGGCTTCCEEECTTSCCC-CC------------GGGTTCTTCCEEECTTSCCCCC
T ss_pred cccccceeeeeeCC-CCcccccc--cccCCCCcEEECCCCCCC-Cc------------hhhcCCCCCCEEECCCCccCcc
Confidence 34577899999998 56777765 488999999999998876 33 6778889999999998888877
Q ss_pred cccc--ccccCcEEEEE
Q 039375 84 QEGF--LARKLERFKIS 98 (311)
Q Consensus 84 p~~~--~l~~L~~l~~~ 98 (311)
+... .+++|+.++++
T Consensus 101 ~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLV 117 (272)
T ss_dssp CTTTTTTCTTCCEEECT
T ss_pred ChhHhcCCcCCCEEECC
Confidence 7654 37888888775
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.42 E-value=5.6e-14 Score=122.75 Aligned_cols=81 Identities=16% Similarity=0.044 Sum_probs=47.7
Q ss_pred cccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccC
Q 039375 199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSA 278 (311)
Q Consensus 199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~ 278 (311)
.+++|+.|++++| ++++..+...+..+++|++|++++|.. +.+.. ..+++|++|+++++ +++.+ +
T Consensus 226 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip~----------~~~~~L~~L~Ls~N-~l~~~--p 290 (312)
T 1wwl_A 226 ARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPK----------GLPAKLSVLDLSYN-RLDRN--P 290 (312)
T ss_dssp TTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCC-SSCCS----------SCCSEEEEEECCSS-CCCSC--C
T ss_pred cCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCcc-Chhhh----------hccCCceEEECCCC-CCCCC--h
Confidence 3467777777777 666532224455567777777776653 33311 11267777777765 35555 2
Q ss_pred CceecCCCccEEEEecC
Q 039375 279 NYTFKFPSLEYLEVIGC 295 (311)
Q Consensus 279 ~~~~~~~~L~~L~i~~c 295 (311)
. ...+++|++|++.+.
T Consensus 291 ~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 291 S-PDELPQVGNLSLKGN 306 (312)
T ss_dssp C-TTTSCEEEEEECTTC
T ss_pred h-HhhCCCCCEEeccCC
Confidence 1 445677777777664
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.41 E-value=1.4e-12 Score=120.83 Aligned_cols=217 Identities=17% Similarity=0.134 Sum_probs=144.2
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
|..++.+++|++|+|++ +.++.+++ + +.+++|++|++++|.+. .+ | ..++|+.|++++|.+
T Consensus 51 ~~~~~~l~~L~~L~Ls~-N~l~~~~~-l-~~l~~L~~L~Ls~N~l~-~l--~-------------~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 51 AADLAPFTKLELLNLSS-NVLYETLD-L-ESLSTLRTLDLNNNYVQ-EL--L-------------VGPSIETLHAANNNI 111 (487)
T ss_dssp GGGGTTCTTCCEEECTT-SCCEEEEE-C-TTCTTCCEEECCSSEEE-EE--E-------------ECTTCCEEECCSSCC
T ss_pred HHHHhCCCCCCEEEeeC-CCCCCCcc-c-ccCCCCCEEEecCCcCC-CC--C-------------CCCCcCEEECcCCcC
Confidence 35688999999999999 67776666 4 99999999999999887 44 2 238999999999998
Q ss_pred cccccccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc-c
Q 039375 81 SILQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ-S 159 (311)
Q Consensus 81 ~~lp~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~-~ 159 (311)
..++.. .+++|+.++++.+. +.+..|. .+ +.++.++.+.+..+ .++...+... .
T Consensus 112 ~~~~~~-~l~~L~~L~L~~N~--l~~~~~~--~~----------~~l~~L~~L~Ls~N----------~l~~~~~~~l~~ 166 (487)
T 3oja_A 112 SRVSCS-RGQGKKNIYLANNK--ITMLRDL--DE----------GCRSRVQYLDLKLN----------EIDTVNFAELAA 166 (487)
T ss_dssp CCEEEC-CCSSCEEEECCSSC--CCSGGGB--CG----------GGGSSEEEEECTTS----------CCCEEEGGGGGG
T ss_pred CCCCcc-ccCCCCEEECCCCC--CCCCCch--hh----------cCCCCCCEEECCCC----------CCCCcChHHHhh
Confidence 877764 35789988876332 2221111 11 34455555444332 2333222221 3
Q ss_pred cccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCc
Q 039375 160 RITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCR 238 (311)
Q Consensus 160 ~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~ 238 (311)
.+++|+.|++++ .+... .....+++|+.|++++| ++++ .++. +..+++|+.|++++|.
T Consensus 167 ~l~~L~~L~Ls~N~l~~~------------------~~~~~l~~L~~L~Ls~N-~l~~-~~~~-~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDV------------------KGQVVFAKLKTLDLSSN-KLAF-MGPE-FQSAAGVTWISLRNNK 225 (487)
T ss_dssp GTTTCCEEECTTSCCCEE------------------ECCCCCTTCCEEECCSS-CCCE-ECGG-GGGGTTCSEEECTTSC
T ss_pred hCCcccEEecCCCccccc------------------cccccCCCCCEEECCCC-CCCC-CCHh-HcCCCCccEEEecCCc
Confidence 678999999976 11111 01234789999999999 8988 4444 7889999999999876
Q ss_pred CceEEeccCCcccccccccccccceeeccccccc-ceeccCCceecCCCccEEEEe
Q 039375 239 AMTEVVINDKEGVDIEEIVFSKLKALILCDLDSL-TSFCSANYTFKFPSLEYLEVI 293 (311)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l-~~~~~~~~~~~~~~L~~L~i~ 293 (311)
. ..+. .....+++|+.|.+.+++-. ..+ +.....++.|+.+.+.
T Consensus 226 l-~~lp--------~~l~~l~~L~~L~l~~N~l~c~~~--~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 226 L-VLIE--------KALRFSQNLEHFDLRGNGFHCGTL--RDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp C-CEEC--------TTCCCCTTCCEEECTTCCBCHHHH--HHHHTTCHHHHHHHHH
T ss_pred C-cccc--------hhhccCCCCCEEEcCCCCCcCcch--HHHHHhCCCCcEEecc
Confidence 4 4442 22356789999999987532 122 1123456667666664
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.41 E-value=1.4e-12 Score=112.73 Aligned_cols=175 Identities=17% Similarity=0.108 Sum_probs=121.5
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF 87 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~ 87 (311)
+++++|++++ +.++.+++..+..+++|++|++++|.+. .+ + ..+.+++|+.|++++|.+..+|..+
T Consensus 31 ~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~--~----------~~~~l~~L~~L~Ls~N~l~~l~~~~ 96 (290)
T 1p9a_G 31 KDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELT-KL--Q----------VDGTLPVLGTLDLSHNQLQSLPLLG 96 (290)
T ss_dssp TTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTSCCC-EE--E----------CCSCCTTCCEEECCSSCCSSCCCCT
T ss_pred CCCCEEEcCC-CcCCccCHHHhhcCCCCCEEECCCCccC-cc--c----------CCCCCCcCCEEECCCCcCCcCchhh
Confidence 6899999999 7888886554599999999999999987 55 2 2378999999999999999999877
Q ss_pred c-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccce
Q 039375 88 L-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVS 166 (311)
Q Consensus 88 ~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~ 166 (311)
. +++|+.++++.+. + ..+|.. .+ ..+++++.+.+.++ .++.+.......+++|+.
T Consensus 97 ~~l~~L~~L~l~~N~--l-~~l~~~-~~----------~~l~~L~~L~L~~N----------~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 97 QTLPALTVLDVSFNR--L-TSLPLG-AL----------RGLGELQELYLKGN----------ELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp TTCTTCCEEECCSSC--C-CCCCSS-TT----------TTCTTCCEEECTTS----------CCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCc--C-cccCHH-HH----------cCCCCCCEEECCCC----------CCCccChhhcccccCCCE
Confidence 4 8999999886332 1 112100 11 44555655555432 122221111156778999
Q ss_pred EEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375 167 LFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA 239 (311)
Q Consensus 167 L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~ 239 (311)
|++++ .+..++ +.....+++|+.|++++| +++.+ +..+...++|+.|++++|+.
T Consensus 153 L~L~~N~l~~l~----------------~~~~~~l~~L~~L~L~~N-~l~~i--p~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 153 LSLANNNLTELP----------------AGLLNGLENLDTLLLQEN-SLYTI--PKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECTTSCCSCCC----------------TTTTTTCTTCCEEECCSS-CCCCC--CTTTTTTCCCSEEECCSCCB
T ss_pred EECCCCcCCccC----------------HHHhcCcCCCCEEECCCC-cCCcc--ChhhcccccCCeEEeCCCCc
Confidence 99876 111111 111356789999999999 88863 34566778999999998875
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.40 E-value=3.5e-12 Score=121.21 Aligned_cols=222 Identities=18% Similarity=0.142 Sum_probs=117.1
Q ss_pred CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccc
Q 039375 9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFL 88 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~ 88 (311)
++++|++++ +.++.+|..+ . ++|++|++++|.+. .+ | . .+++|++|++++|.+..+|. .
T Consensus 41 ~l~~L~ls~-n~L~~lp~~l-~--~~L~~L~L~~N~l~-~l--p---------~---~l~~L~~L~Ls~N~l~~lp~--~ 99 (622)
T 3g06_A 41 GNAVLNVGE-SGLTTLPDCL-P--AHITTLVIPDNNLT-SL--P---------A---LPPELRTLEVSGNQLTSLPV--L 99 (622)
T ss_dssp CCCEEECCS-SCCSCCCSCC-C--TTCSEEEECSCCCS-CC--C---------C---CCTTCCEEEECSCCCSCCCC--C
T ss_pred CCcEEEecC-CCcCccChhh-C--CCCcEEEecCCCCC-CC--C---------C---cCCCCCEEEcCCCcCCcCCC--C
Confidence 467777777 5667777655 3 57777777777765 55 3 2 45667777777777666666 4
Q ss_pred cccCcEEEEEecCcccccccccccccccccccccccccccccccccccC-----------ceeeEEccccCCcceecccc
Q 039375 89 ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKP-----------DFTDICSMKLQAINNVEYIS 157 (311)
Q Consensus 89 l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~l~~L~l~~~~~~~~~~~~~ 157 (311)
+++|+.++++.+. +..+| ...++++.+.+.+ +++.|.+..+ .++.+.
T Consensus 100 l~~L~~L~Ls~N~---l~~l~---------------~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N-~l~~l~--- 157 (622)
T 3g06_A 100 PPGLLELSIFSNP---LTHLP---------------ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN-QLASLP--- 157 (622)
T ss_dssp CTTCCEEEECSCC---CCCCC---------------CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCC---
T ss_pred CCCCCEEECcCCc---CCCCC---------------CCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCC-cCCCcC---
Confidence 5667776665322 11111 1112222222221 1333333322 121111
Q ss_pred cccccccceEEEec-eEecccccccCcccccccEEeCC---CCcccccCccEEEEecCCCceeecCccccccCCCCCEEe
Q 039375 158 QSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLP---SSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQ 233 (311)
Q Consensus 158 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~---~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~ 233 (311)
..+++|+.|++++ .+..++ .....|..|.+.+- .....+++|+.|.+++| .++.+ + ..+++|+.|+
T Consensus 158 -~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N-~l~~l-~----~~~~~L~~L~ 227 (622)
T 3g06_A 158 -ALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN-RLTSL-P----ALPSGLKELI 227 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSC-C----CCCTTCCEEE
T ss_pred -CccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCccchhhEEECcCC-ccccc-C----CCCCCCCEEE
Confidence 2233455555544 111111 11123333332220 00113456777777777 66652 2 1347788888
Q ss_pred eccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCCCCeecC
Q 039375 234 VYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMKTFT 302 (311)
Q Consensus 234 l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~ 302 (311)
+++|. +..+. ..+++|+.|.++++ .++.+.. .+++|++|++++| +++.+|
T Consensus 228 Ls~N~-L~~lp-----------~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp 277 (622)
T 3g06_A 228 VSGNR-LTSLP-----------VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLP 277 (622)
T ss_dssp CCSSC-CSCCC-----------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCC
T ss_pred ccCCc-cCcCC-----------CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCC
Confidence 88664 33331 35688999999887 5666632 6789999999887 444444
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.39 E-value=1.6e-12 Score=113.23 Aligned_cols=171 Identities=14% Similarity=0.170 Sum_probs=124.3
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
.+..+++|++|++++ +.++.+++ + +++++|++|++++|.+. .+ ..++.+++|+.|++++|.+..
T Consensus 58 ~~~~l~~L~~L~L~~-n~i~~~~~-~-~~l~~L~~L~L~~n~l~-~~------------~~~~~l~~L~~L~l~~n~l~~ 121 (308)
T 1h6u_A 58 GVQYLNNLIGLELKD-NQITDLAP-L-KNLTKITELELSGNPLK-NV------------SAIAGLQSIKTLDLTSTQITD 121 (308)
T ss_dssp TGGGCTTCCEEECCS-SCCCCCGG-G-TTCCSCCEEECCSCCCS-CC------------GGGTTCTTCCEEECTTSCCCC
T ss_pred hhhccCCCCEEEccC-CcCCCChh-H-ccCCCCCEEEccCCcCC-Cc------------hhhcCCCCCCEEECCCCCCCC
Confidence 467899999999999 68898888 5 99999999999999886 44 568899999999999999888
Q ss_pred cccccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccccc
Q 039375 83 LQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRIT 162 (311)
Q Consensus 83 lp~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~ 162 (311)
++....+++|+.++++.+.. ..++ .+ ..+++++.+.+.. + .++.+.. ...++
T Consensus 122 ~~~l~~l~~L~~L~l~~n~l---~~~~---~l----------~~l~~L~~L~l~~---------n-~l~~~~~--l~~l~ 173 (308)
T 1h6u_A 122 VTPLAGLSNLQVLYLDLNQI---TNIS---PL----------AGLTNLQYLSIGN---------A-QVSDLTP--LANLS 173 (308)
T ss_dssp CGGGTTCTTCCEEECCSSCC---CCCG---GG----------GGCTTCCEEECCS---------S-CCCCCGG--GTTCT
T ss_pred chhhcCCCCCCEEECCCCcc---CcCc---cc----------cCCCCccEEEccC---------C-cCCCChh--hcCCC
Confidence 88744589999998863321 1111 11 4445555544433 2 2222211 16678
Q ss_pred ccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375 163 LTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA 239 (311)
Q Consensus 163 ~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~ 239 (311)
+|+.|++++ .+... .....+++|+.|++++| +++++ + .+..+++|+.|++++|..
T Consensus 174 ~L~~L~l~~n~l~~~------------------~~l~~l~~L~~L~L~~N-~l~~~-~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 174 KLTTLKADDNKISDI------------------SPLASLPNLIEVHLKNN-QISDV-S--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp TCCEEECCSSCCCCC------------------GGGGGCTTCCEEECTTS-CCCBC-G--GGTTCTTCCEEEEEEEEE
T ss_pred CCCEEECCCCccCcC------------------hhhcCCCCCCEEEccCC-ccCcc-c--cccCCCCCCEEEccCCee
Confidence 899999876 11111 11456789999999999 88874 2 378899999999998864
No 74
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.39 E-value=1.9e-13 Score=125.62 Aligned_cols=229 Identities=14% Similarity=0.009 Sum_probs=110.3
Q ss_pred CCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCc-------------cE
Q 039375 6 QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWL-------------TT 72 (311)
Q Consensus 6 ~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L-------------~~ 72 (311)
+.++|++|++++ +.++.+|+++ ++|++|++|++++|.+.+.+ | .+++.+.+| +.
T Consensus 9 ~~~~L~~L~l~~-n~l~~iP~~i-~~L~~L~~L~l~~n~~~~~~--p---------~~~~~l~~L~~l~l~~c~~~~l~~ 75 (454)
T 1jl5_A 9 SNTFLQEPLRHS-SNLTEMPVEA-ENVKSKTEYYNAWSEWERNA--P---------PGNGEQREMAVSRLRDCLDRQAHE 75 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTS--C---------TTSCCCHHHHHHHHHHHHHHTCSE
T ss_pred ccccchhhhccc-CchhhCChhH-hcccchhhhhccCCcccccC--C---------cccccchhcchhhhhhhhccCCCE
Confidence 368999999999 6779999997 99999999999999887666 6 666666554 77
Q ss_pred EEEeecCccccccccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccC-----------ceee
Q 039375 73 LEIDVKNDSILQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKP-----------DFTD 141 (311)
Q Consensus 73 L~l~~~~~~~lp~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~l~~ 141 (311)
|++++++...+|.. .++|+.++++.+. + ..+|.. .++++.+.+.. .++.
T Consensus 76 L~l~~~~l~~lp~~--~~~L~~L~l~~n~--l-~~lp~~---------------~~~L~~L~l~~n~l~~l~~~~~~L~~ 135 (454)
T 1jl5_A 76 LELNNLGLSSLPEL--PPHLESLVASCNS--L-TELPEL---------------PQSLKSLLVDNNNLKALSDLPPLLEY 135 (454)
T ss_dssp EECTTSCCSCCCSC--CTTCSEEECCSSC--C-SSCCCC---------------CTTCCEEECCSSCCSCCCSCCTTCCE
T ss_pred EEecCCccccCCCC--cCCCCEEEccCCc--C-Cccccc---------------cCCCcEEECCCCccCcccCCCCCCCE
Confidence 88877777777663 3577777665222 1 112210 12222222221 2444
Q ss_pred EEccccCCcceecccccccccccceEEEec-eEecccccccCcccccccEEeC-----CCCcccccCccEEEEecCCCce
Q 039375 142 ICSMKLQAINNVEYISQSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILL-----PSSSVSFRNLTKLVAVGCKELI 215 (311)
Q Consensus 142 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~-----~~~~~~l~~L~~L~l~~~~~l~ 215 (311)
|.+..+ .++.+. . ...+++|++|++++ .+..++ .....++.+.+.+ -.....+++|+.|++++| +++
T Consensus 136 L~L~~n-~l~~lp-~-~~~l~~L~~L~l~~N~l~~lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N-~l~ 208 (454)
T 1jl5_A 136 LGVSNN-QLEKLP-E-LQNSSFLKIIDVDNNSLKKLP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN-SLK 208 (454)
T ss_dssp EECCSS-CCSSCC-C-CTTCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCS
T ss_pred EECcCC-CCCCCc-c-cCCCCCCCEEECCCCcCcccC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCC-cCC
Confidence 555433 122211 1 15666777777765 222111 1112333333222 113455667777777777 555
Q ss_pred eecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecC
Q 039375 216 HLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC 295 (311)
Q Consensus 216 ~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c 295 (311)
.+ + . ..++|+.|++++|.. ..+. ....+++|++|.+.++ .++.+.. .+++|++|++++|
T Consensus 209 ~l-~-~---~~~~L~~L~l~~n~l-~~lp---------~~~~l~~L~~L~l~~N-~l~~l~~-----~~~~L~~L~l~~N 267 (454)
T 1jl5_A 209 KL-P-D---LPLSLESIVAGNNIL-EELP---------ELQNLPFLTTIYADNN-LLKTLPD-----LPPSLEALNVRDN 267 (454)
T ss_dssp SC-C-C---CCTTCCEEECCSSCC-SSCC---------CCTTCTTCCEEECCSS-CCSSCCS-----CCTTCCEEECCSS
T ss_pred cC-C-C---CcCcccEEECcCCcC-Cccc---------ccCCCCCCCEEECCCC-cCCcccc-----cccccCEEECCCC
Confidence 42 1 1 124677777776642 2331 1356788888888875 3444421 3467777777765
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.38 E-value=1.5e-12 Score=111.51 Aligned_cols=183 Identities=16% Similarity=0.143 Sum_probs=116.3
Q ss_pred CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
..++++++|++|++++ +.++.+++..++++++|++|++++|.+. .+. + ..++.+++|++|+++.|...
T Consensus 46 ~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~-~---------~~~~~l~~L~~L~l~~n~l~ 113 (276)
T 2z62_A 46 YSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLA-L---------GAFSGLSSLQKLVAVETNLA 113 (276)
T ss_dssp TTTTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCC-EEC-T---------TTTTTCTTCCEEECTTSCCC
T ss_pred hHhccccCCcEEECCC-CcCCccCHHHccCCcCCCEEECCCCccC-ccC-h---------hhhcCCccccEEECCCCCcc
Confidence 3678899999999999 6888887755599999999999999987 442 4 67889999999999999888
Q ss_pred cccc-cc-ccccCcEEEEEecCccccc-ccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc
Q 039375 82 ILQE-GF-LARKLERFKISIGNESFMA-SLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ 158 (311)
Q Consensus 82 ~lp~-~~-~l~~L~~l~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~ 158 (311)
.++. .+ .+++|+.++++.+. +.. .+|. .+ +.+++++.+.+..+ .++.+.....
T Consensus 114 ~~~~~~~~~l~~L~~L~l~~n~--l~~~~l~~--~~----------~~l~~L~~L~Ls~N----------~l~~~~~~~~ 169 (276)
T 2z62_A 114 SLENFPIGHLKTLKELNVAHNL--IQSFKLPE--YF----------SNLTNLEHLDLSSN----------KIQSIYCTDL 169 (276)
T ss_dssp CSTTCCCTTCTTCCEEECCSSC--CCCCCCCG--GG----------GGCTTCCEEECCSS----------CCCEECGGGG
T ss_pred ccCchhcccCCCCCEEECcCCc--cceecCch--hh----------ccCCCCCEEECCCC----------CCCcCCHHHh
Confidence 7776 34 38899999886332 111 1121 11 34444554444332 1222211111
Q ss_pred ccccccc----eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEe
Q 039375 159 SRITLTV----SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQ 233 (311)
Q Consensus 159 ~~~~~L~----~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~ 233 (311)
..+++|+ +|++++ .+... +.......+|+.|++++| +++. .+...+..+++|+.|+
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~~~-----------------~~~~~~~~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMNFI-----------------QPGAFKEIRLKELALDTN-QLKS-VPDGIFDRLTSLQKIW 230 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCCEE-----------------CTTSSCSCCEEEEECCSS-CCSC-CCTTTTTTCCSCCEEE
T ss_pred hhhhhccccceeeecCCCccccc-----------------CccccCCCcccEEECCCC-ceee-cCHhHhcccccccEEE
Confidence 3334444 444443 11100 111122337888888888 7776 4555667788888888
Q ss_pred eccCcC
Q 039375 234 VYGCRA 239 (311)
Q Consensus 234 l~~c~~ 239 (311)
+++|+.
T Consensus 231 l~~N~~ 236 (276)
T 2z62_A 231 LHTNPW 236 (276)
T ss_dssp CCSSCB
T ss_pred ccCCcc
Confidence 887664
No 76
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.37 E-value=3.6e-12 Score=117.03 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=28.7
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccce
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVE 46 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~ 46 (311)
++|++|++++ +.++.+| ++ +++++|++|++++|.+.
T Consensus 131 ~~L~~L~L~~-n~l~~lp-~~-~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 131 PLLEYLGVSN-NQLEKLP-EL-QNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp TTCCEEECCS-SCCSSCC-CC-TTCTTCCEEECCSSCCS
T ss_pred CCCCEEECcC-CCCCCCc-cc-CCCCCCCEEECCCCcCc
Confidence 5788888888 5777788 44 88888888888888776
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.36 E-value=1.7e-14 Score=127.08 Aligned_cols=64 Identities=17% Similarity=0.064 Sum_probs=38.3
Q ss_pred ccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccc
Q 039375 198 VSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDL 269 (311)
Q Consensus 198 ~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~ 269 (311)
..+++|+.|++++|..+++ ..+..+..+++|++|++++|..+.... ......+++|++|.+.+|
T Consensus 219 ~~~~~L~~L~l~~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-------~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSRCYDIIPET-------LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTCTTCCGGG-------GGGGGGCTTCCEEECTTS
T ss_pred hhCCCCCEEeCCCCCcCCH-HHHHHHhCCCCCCEeeCCCCCCCCHHH-------HHHHhcCCCCCEEeccCc
Confidence 3466777777777743554 334456667777777777775322110 011245777777777776
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.35 E-value=3.1e-12 Score=108.09 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=91.5
Q ss_pred CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc-
Q 039375 9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF- 87 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~- 87 (311)
..+++++++ +.++.+|.++ . .+|++|++++|.+.... + ..++.+++|++|++++|.+..++...
T Consensus 15 ~~~~l~~~~-~~l~~~p~~~-~--~~l~~L~L~~n~l~~~~--~---------~~~~~l~~L~~L~L~~n~l~~~~~~~~ 79 (251)
T 3m19_A 15 GKKEVDCQG-KSLDSVPSGI-P--ADTEKLDLQSTGLATLS--D---------ATFRGLTKLTWLNLDYNQLQTLSAGVF 79 (251)
T ss_dssp GGTEEECTT-CCCSSCCSCC-C--TTCCEEECTTSCCCCCC--T---------TTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CCeEEecCC-CCccccCCCC-C--CCCCEEEccCCCcCccC--H---------hHhcCcccCCEEECCCCcCCccCHhHh
Confidence 456667776 5666777654 3 46777777777665222 3 45666777777777766666555432
Q ss_pred -ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccce
Q 039375 88 -LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVS 166 (311)
Q Consensus 88 -~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~ 166 (311)
.+++|+.++++.+. +. .+|.. .+ ..+++++.+.+..+ .++.+.......+++|+.
T Consensus 80 ~~l~~L~~L~L~~n~--l~-~~~~~-~~----------~~l~~L~~L~L~~N----------~l~~~~~~~~~~l~~L~~ 135 (251)
T 3m19_A 80 DDLTELGTLGLANNQ--LA-SLPLG-VF----------DHLTQLDKLYLGGN----------QLKSLPSGVFDRLTKLKE 135 (251)
T ss_dssp TTCTTCCEEECTTSC--CC-CCCTT-TT----------TTCTTCCEEECCSS----------CCCCCCTTTTTTCTTCCE
T ss_pred ccCCcCCEEECCCCc--cc-ccChh-Hh----------cccCCCCEEEcCCC----------cCCCcChhHhccCCcccE
Confidence 26666666654221 11 11100 00 22233333333221 111111100044566777
Q ss_pred EEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375 167 LFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA 239 (311)
Q Consensus 167 L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~ 239 (311)
|++++ .+..+. +..+..+++|+.|++++| +++. .++..+..+++|+.|++++|+.
T Consensus 136 L~Ls~N~l~~~~----------------~~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 136 LRLNTNQLQSIP----------------AGAFDKLTNLQTLSLSTN-QLQS-VPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp EECCSSCCCCCC----------------TTTTTTCTTCCEEECCSS-CCSC-CCTTTTTTCTTCCEEECCSCCB
T ss_pred EECcCCcCCccC----------------HHHcCcCcCCCEEECCCC-cCCc-cCHHHHhCCCCCCEEEeeCCce
Confidence 77655 111110 112445677888888888 7776 4555667778888888877664
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.35 E-value=3.5e-12 Score=109.07 Aligned_cols=172 Identities=15% Similarity=0.092 Sum_probs=119.9
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
.++.+++|++|++++ +.+..++ .+ +++++|++|++++|.+. .+. + ..++.+++|++|+++.|.+..
T Consensus 58 ~l~~l~~L~~L~l~~-n~l~~~~-~l-~~l~~L~~L~L~~n~l~-~~~-~---------~~~~~l~~L~~L~L~~n~l~~ 123 (272)
T 3rfs_A 58 GIQYLPNVRYLALGG-NKLHDIS-AL-KELTNLTYLILTGNQLQ-SLP-N---------GVFDKLTNLKELVLVENQLQS 123 (272)
T ss_dssp TGGGCTTCCEEECTT-SCCCCCG-GG-TTCTTCCEEECTTSCCC-CCC-T---------TTTTTCTTCCEEECTTSCCCC
T ss_pred ccccCCCCcEEECCC-CCCCCch-hh-cCCCCCCEEECCCCccC-ccC-h---------hHhcCCcCCCEEECCCCcCCc
Confidence 577899999999999 6778776 44 99999999999999987 442 3 457889999999999999888
Q ss_pred ccccc--ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccc
Q 039375 83 LQEGF--LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSR 160 (311)
Q Consensus 83 lp~~~--~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~ 160 (311)
++... .+++|+.++++.+. + ..+| ......
T Consensus 124 ~~~~~~~~l~~L~~L~L~~n~--l-~~~~---------------------------------------------~~~~~~ 155 (272)
T 3rfs_A 124 LPDGVFDKLTNLTYLNLAHNQ--L-QSLP---------------------------------------------KGVFDK 155 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSC--C-CCCC---------------------------------------------TTTTTT
T ss_pred cCHHHhccCCCCCEEECCCCc--c-CccC---------------------------------------------HHHhcc
Confidence 87753 37788888765221 0 0000 000044
Q ss_pred ccccceEEEece-EecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375 161 ITLTVSLFIRRG-IFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA 239 (311)
Q Consensus 161 ~~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~ 239 (311)
+++|+.|++++. +.... +.....+++|+.|++++| +++. .++..+..+++|+.|++++|+.
T Consensus 156 l~~L~~L~l~~n~l~~~~----------------~~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 156 LTNLTELDLSYNQLQSLP----------------EGVFDKLTQLKDLRLYQN-QLKS-VPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CTTCCEEECCSSCCCCCC----------------TTTTTTCTTCCEEECCSS-CCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCCEEECCCCCcCccC----------------HHHhcCCccCCEEECCCC-cCCc-cCHHHHhCCcCCCEEEccCCCc
Confidence 567777777651 11110 112456789999999999 7887 5556678899999999998864
Q ss_pred ceEEeccCCcccccccccccccceeecccc
Q 039375 240 MTEVVINDKEGVDIEEIVFSKLKALILCDL 269 (311)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~ 269 (311)
. +.++.|+.+.+..+
T Consensus 218 ~---------------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 218 D---------------CTCPGIRYLSEWIN 232 (272)
T ss_dssp C---------------CCTTTTHHHHHHHH
T ss_pred c---------------ccCcHHHHHHHHHH
Confidence 2 23556666666544
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.32 E-value=4.1e-13 Score=118.16 Aligned_cols=227 Identities=13% Similarity=0.071 Sum_probs=143.9
Q ss_pred CccEEecCCCCCCcccChhHHHhc--cccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc--cc
Q 039375 9 KLRLLDLRDCFHLKVIAPNVISSL--IRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI--LQ 84 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~i~~~L--~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~--lp 84 (311)
.++.+++++ +.+. |.. +.++ .++++|++++|.+.... ..+..+++|+.|+++++.+.. ++
T Consensus 48 ~~~~l~l~~-~~~~--~~~-~~~~~~~~l~~L~l~~n~l~~~~------------~~~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 48 LWQTLDLTG-KNLH--PDV-TGRLLSQGVIAFRCPRSFMDQPL------------AEHFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp TSSEEECTT-CBCC--HHH-HHHHHHTTCSEEECTTCEECSCC------------CSCCCCBCCCEEECTTCEECHHHHH
T ss_pred hheeecccc-ccCC--HHH-HHhhhhccceEEEcCCccccccc------------hhhccCCCCCEEEccCCCcCHHHHH
Confidence 478899998 4444 333 4887 89999999999876333 446678999999998877543 56
Q ss_pred cccc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc-cccc
Q 039375 85 EGFL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ-SRIT 162 (311)
Q Consensus 85 ~~~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~-~~~~ 162 (311)
..+. +++|+.++++.+. +....+. .+ ..+++ ++.|.+..|..++....... ..++
T Consensus 112 ~~~~~~~~L~~L~L~~~~--l~~~~~~--~l----------~~~~~---------L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLR--LSDPIVN--TL----------AKNSN---------LVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp HHHTTBCCCSEEECTTCB--CCHHHHH--HH----------TTCTT---------CSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred HHHhhCCCCCEEeCcCcc--cCHHHHH--HH----------hcCCC---------CCEEECCCCCCCCHHHHHHHHhcCC
Confidence 5553 8899998875221 1111110 01 22233 45666666655554322222 6788
Q ss_pred ccceEEEeceEecccccccCcccccccEEeCCCCccccc-CccEEEEecCC-CceeecCccccccCCCCCEEeeccCcCc
Q 039375 163 LTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFR-NLTKLVAVGCK-ELIHLVTSSTAKTLVRLVTVQVYGCRAM 240 (311)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~-~L~~L~l~~~~-~l~~l~~~~~l~~l~~L~~L~l~~c~~l 240 (311)
+|++|+++++ ..+.... + +.....++ +|+.|++++|. .+++...+..+..+++|+.|++++|..+
T Consensus 169 ~L~~L~l~~~-~~l~~~~-----~-------~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l 235 (336)
T 2ast_B 169 RLDELNLSWC-FDFTEKH-----V-------QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235 (336)
T ss_dssp TCCEEECCCC-TTCCHHH-----H-------HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC
T ss_pred CCCEEcCCCC-CCcChHH-----H-------HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC
Confidence 9999998761 0111000 0 01134578 99999999995 4543233456678999999999999854
Q ss_pred eEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecC
Q 039375 241 TEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC 295 (311)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c 295 (311)
++.. ......+++|++|.+.+|..+..... .....+++|++|++.+|
T Consensus 236 ~~~~-------~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 236 KNDC-------FQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGG-------GGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred CHHH-------HHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc
Confidence 4321 11235689999999999975433211 12346899999999887
No 81
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.29 E-value=9e-13 Score=124.80 Aligned_cols=264 Identities=13% Similarity=0.067 Sum_probs=125.4
Q ss_pred CCCCccEEecCCCCCCc-----ccChhHHHhccccceEEeccccceeeeecccc------------------cccccccc
Q 039375 6 QVTKLRLLDLRDCFHLK-----VIAPNVISSLIRLEELCMGNCSVEWEVERANT------------------ERSNASLD 62 (311)
Q Consensus 6 ~L~~L~~L~L~~c~~l~-----~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~------------------~~~~~~l~ 62 (311)
.+++|++|++++ +.++ .++. ++.++++|++|++++|.+. .+ |.. ........
T Consensus 190 ~~~~L~~L~L~~-n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~-~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 190 HNTSLEVLNFYM-TEFAKISPKDLET-IARNCRSLVSVKVGDFEIL-EL--VGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HCCCCCEEECTT-CCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGG-GG--HHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred cCCCccEEEeec-cCCCccCHHHHHH-HHhhCCCCcEEeccCccHH-HH--HHHHhhhhHHHhhcccccccccchHHHHH
Confidence 467777777777 4444 2222 2366777777777777654 22 100 00011123
Q ss_pred ccCCCCCccEEEEeecCccccccccc-cccCcEEEEEecCccccc-ccccccccccccccccccccccccccccccC---
Q 039375 63 ELMLLPWLTTLEIDVKNDSILQEGFL-ARKLERFKISIGNESFMA-SLPVTKDWFRSRSHFLINHNHERLRELKLKP--- 137 (311)
Q Consensus 63 ~l~~L~~L~~L~l~~~~~~~lp~~~~-l~~L~~l~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~--- 137 (311)
.++.+++|+.|+++......+|..+. +++|+.++++.+. ... .++ .+-..+++++.+.+..
T Consensus 265 ~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~--l~~~~~~------------~~~~~~~~L~~L~L~~~~~ 330 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL--LETEDHC------------TLIQKCPNLEVLETRNVIG 330 (592)
T ss_dssp CCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC--CCHHHHH------------HHHTTCTTCCEEEEEGGGH
T ss_pred HhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc--CCHHHHH------------HHHHhCcCCCEEeccCccC
Confidence 44555666666665555555665553 6777777775222 100 000 0003334444444421
Q ss_pred ------------ceeeEEccc----------cCCcceeccccc-ccccccceEEEec-eEecc--cccccCcccccccEE
Q 039375 138 ------------DFTDICSMK----------LQAINNVEYISQ-SRITLTVSLFIRR-GIFNG--RMLRETFEEVGNDKI 191 (311)
Q Consensus 138 ------------~l~~L~l~~----------~~~~~~~~~~~~-~~~~~L~~L~l~~-~~~~~--~~~~~~~~~l~~L~~ 191 (311)
.++.|.+.+ |..++....... ..+++|++|++.. .+.+. .........|+.+..
T Consensus 331 ~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l 410 (592)
T 3ogk_B 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRL 410 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEE
Confidence 156666664 555543322221 4466777777743 11100 000000113333333
Q ss_pred eC-----CC-----------CcccccCccEEEEecCCC-ceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccc
Q 039375 192 LL-----PS-----------SSVSFRNLTKLVAVGCKE-LIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIE 254 (311)
Q Consensus 192 ~~-----~~-----------~~~~l~~L~~L~l~~~~~-l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 254 (311)
.+ .. ....+++|+.|+++.|.+ +++.........+++|+.|++++|......+ +.-
T Consensus 411 ~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-------~~~ 483 (592)
T 3ogk_B 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL-------MEF 483 (592)
T ss_dssp EECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH-------HHH
T ss_pred eecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH-------HHH
Confidence 21 00 022366777777766532 3331111222346777777777665221110 001
Q ss_pred cccccccceeecccccccceeccCCceecCCCccEEEEecCC
Q 039375 255 EIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCP 296 (311)
Q Consensus 255 ~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 296 (311)
...+++|++|++++|+ +...........+++|++|++++|.
T Consensus 484 ~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 1346778888888776 4322111122357788888888875
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.28 E-value=1.1e-11 Score=104.55 Aligned_cols=174 Identities=13% Similarity=0.091 Sum_probs=101.9
Q ss_pred cccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-c-ccccCcEEEEEecCccccccccc
Q 039375 33 IRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG-F-LARKLERFKISIGNESFMASLPV 110 (311)
Q Consensus 33 ~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~-~-~l~~L~~l~~~~~~~~~~~~~p~ 110 (311)
.+.++++.+++.+. .+ | ..+. ++|+.|+++++.+..++.. + .+++|+.++++.+. +....+.
T Consensus 14 ~~~~~l~~~~~~l~-~~--p---------~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~ 77 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SV--P---------SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQTLSAG 77 (251)
T ss_dssp GGGTEEECTTCCCS-SC--C---------SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCCCCTT
T ss_pred CCCeEEecCCCCcc-cc--C---------CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc--CCccCHh
Confidence 46789999999887 66 5 4444 5899999999998877764 3 38899999875322 1111110
Q ss_pred ccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccceEEEec-eEecccccccCccccccc
Q 039375 111 TKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLFIRR-GIFNGRMLRETFEEVGND 189 (311)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L 189 (311)
.+ ..+++++.+.+.++ .++.+.......+++|++|++++ .+....
T Consensus 78 --~~----------~~l~~L~~L~L~~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------ 123 (251)
T 3m19_A 78 --VF----------DDLTELGTLGLANN----------QLASLPLGVFDHLTQLDKLYLGGNQLKSLP------------ 123 (251)
T ss_dssp --TT----------TTCTTCCEEECTTS----------CCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------
T ss_pred --Hh----------ccCCcCCEEECCCC----------cccccChhHhcccCCCCEEEcCCCcCCCcC------------
Confidence 01 33444544444332 12211111114566777777765 111110
Q ss_pred EEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccc
Q 039375 190 KILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDL 269 (311)
Q Consensus 190 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~ 269 (311)
+.....+++|+.|++++| +++. .++..+..+++|++|++++|.. ..+.. .....+++|+.|.+.++
T Consensus 124 ----~~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~N~l-~~~~~-------~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 124 ----SGVFDRLTKLKELRLNTN-QLQS-IPAGAFDKLTNLQTLSLSTNQL-QSVPH-------GAFDRLGKLQTITLFGN 189 (251)
T ss_dssp ----TTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSCC-SCCCT-------TTTTTCTTCCEEECCSC
T ss_pred ----hhHhccCCcccEEECcCC-cCCc-cCHHHcCcCcCCCEEECCCCcC-CccCH-------HHHhCCCCCCEEEeeCC
Confidence 111345678888888888 7776 4555677788888888887643 33321 11245677777777765
Q ss_pred c
Q 039375 270 D 270 (311)
Q Consensus 270 ~ 270 (311)
+
T Consensus 190 ~ 190 (251)
T 3m19_A 190 Q 190 (251)
T ss_dssp C
T ss_pred c
Confidence 4
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=8.3e-12 Score=101.46 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=32.7
Q ss_pred CCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 6 QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 6 ~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
++++|++|++++ +.++.+| ++ ..+++|++|++++|.+. .+ ..+..+++|++|++++|.+.
T Consensus 42 ~l~~L~~L~l~~-n~i~~l~-~l-~~l~~L~~L~l~~n~~~-~~------------~~l~~l~~L~~L~l~~n~l~ 101 (197)
T 4ezg_A 42 QMNSLTYITLAN-INVTDLT-GI-EYAHNIKDLTINNIHAT-NY------------NPISGLSNLERLRIMGKDVT 101 (197)
T ss_dssp HHHTCCEEEEES-SCCSCCT-TG-GGCTTCSEEEEESCCCS-CC------------GGGTTCTTCCEEEEECTTCB
T ss_pred hcCCccEEeccC-CCccChH-HH-hcCCCCCEEEccCCCCC-cc------------hhhhcCCCCCEEEeECCccC
Confidence 345566666666 4555555 33 56666666666665432 22 44555566666666555543
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.27 E-value=7.1e-12 Score=108.29 Aligned_cols=169 Identities=15% Similarity=0.161 Sum_probs=112.3
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL 83 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l 83 (311)
+..+++|++|++++ +.++.++. + +.+++|++|++++|.+. .+ + . +..+++|+.|+++.|.+..+
T Consensus 42 ~~~l~~L~~L~l~~-~~i~~~~~-~-~~l~~L~~L~L~~n~l~-~~--~---------~-l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 42 QNELNSIDQIIANN-SDIKSVQG-I-QYLPNVTKLFLNGNKLT-DI--K---------P-LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp HHHHHTCCEEECTT-SCCCCCTT-G-GGCTTCCEEECCSSCCC-CC--G---------G-GTTCTTCCEEECCSSCCCCG
T ss_pred hhhcCcccEEEccC-CCcccChh-H-hcCCCCCEEEccCCccC-CC--c---------c-cccCCCCCEEECCCCcCCCC
Confidence 34578899999999 67888875 4 89999999999999887 55 3 3 88899999999999988888
Q ss_pred ccccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccc
Q 039375 84 QEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITL 163 (311)
Q Consensus 84 p~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~ 163 (311)
|....+++|+.++++.+. +..++ .+ ..+++++.+.+..+ .++.+ .....+++
T Consensus 106 ~~l~~l~~L~~L~L~~n~---i~~~~---~l----------~~l~~L~~L~l~~n----------~l~~~--~~l~~l~~ 157 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNG---ISDIN---GL----------VHLPQLESLYLGNN----------KITDI--TVLSRLTK 157 (291)
T ss_dssp GGGTTCTTCCEEECTTSC---CCCCG---GG----------GGCTTCCEEECCSS----------CCCCC--GGGGGCTT
T ss_pred hhhccCCCCCEEECCCCc---CCCCh---hh----------cCCCCCCEEEccCC----------cCCcc--hhhccCCC
Confidence 774458899988875322 11111 12 33444444444332 12111 11156777
Q ss_pred cceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCc
Q 039375 164 TVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCR 238 (311)
Q Consensus 164 L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~ 238 (311)
|+.|++++ .+... .....+++|+.|++++| +++++ ..+..+++|+.|++++|+
T Consensus 158 L~~L~L~~N~l~~~------------------~~l~~l~~L~~L~L~~N-~i~~l---~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 158 LDTLSLEDNQISDI------------------VPLAGLTKLQNLYLSKN-HISDL---RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CSEEECCSSCCCCC------------------GGGTTCTTCCEEECCSS-CCCBC---GGGTTCTTCSEEEEEEEE
T ss_pred CCEEEccCCccccc------------------hhhcCCCccCEEECCCC-cCCCC---hhhccCCCCCEEECcCCc
Confidence 88887765 11111 01345678888888888 77763 236778888888888765
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.25 E-value=1.8e-11 Score=108.45 Aligned_cols=201 Identities=14% Similarity=0.052 Sum_probs=116.8
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceE-EeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEEL-CMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L-~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
.|++|++|++|+|++|...+.+|++.+..+++|+++ .+..|.+. .+. | ..++.+++|++|++++|.+.
T Consensus 49 ~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~-~---------~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YIN-P---------EAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EEC-T---------TSBCCCTTCCEEEEEEECCS
T ss_pred HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccC-c---------hhhhhccccccccccccccc
Confidence 578999999999999544567887766889988764 55667776 553 4 67889999999999999998
Q ss_pred ccccccc--cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccc
Q 039375 82 ILQEGFL--ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQS 159 (311)
Q Consensus 82 ~lp~~~~--l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~ 159 (311)
.+|.... ..++..+.+. ....+..+|... + .+....+ +.|.+.. .+++.+.... .
T Consensus 118 ~~~~~~~~~~~~l~~l~l~--~~~~i~~l~~~~-f---------~~~~~~l---------~~L~L~~-N~i~~i~~~~-f 174 (350)
T 4ay9_X 118 HLPDVHKIHSLQKVLLDIQ--DNINIHTIERNS-F---------VGLSFES---------VILWLNK-NGIQEIHNSA-F 174 (350)
T ss_dssp SCCCCTTCCBSSCEEEEEE--SCTTCCEECTTS-S---------TTSBSSC---------EEEECCS-SCCCEECTTS-S
T ss_pred cCCchhhcccchhhhhhhc--cccccccccccc-h---------hhcchhh---------hhhcccc-ccccCCChhh-c
Confidence 8887654 4455555543 221222222100 0 0111122 3333332 1233332111 2
Q ss_pred cccccceEEEec--eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccC
Q 039375 160 RITLTVSLFIRR--GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGC 237 (311)
Q Consensus 160 ~~~~L~~L~l~~--~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c 237 (311)
...+++.|.+.+ .+..++ +..+..+++|+.|+++++ +++.+ +. ..+.+|+.|.+.++
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~----------------~~~f~~l~~L~~LdLs~N-~l~~l-p~---~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELP----------------NDVFHGASGPVILDISRT-RIHSL-PS---YGLENLKKLRARST 233 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCC----------------TTTTTTEECCSEEECTTS-CCCCC-CS---SSCTTCCEEECTTC
T ss_pred cccchhHHhhccCCcccCCC----------------HHHhccCcccchhhcCCC-CcCcc-Ch---hhhccchHhhhccC
Confidence 233455555543 111111 111345678888888888 77763 32 33556777777777
Q ss_pred cCceEEeccCCcccccccccccccceeecc
Q 039375 238 RAMTEVVINDKEGVDIEEIVFSKLKALILC 267 (311)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~ 267 (311)
..++.++. ...|++|+.+.+.
T Consensus 234 ~~l~~lP~---------l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 234 YNLKKLPT---------LEKLVALMEASLT 254 (350)
T ss_dssp TTCCCCCC---------TTTCCSCCEEECS
T ss_pred CCcCcCCC---------chhCcChhhCcCC
Confidence 66666532 1346777777664
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=2.4e-12 Score=112.22 Aligned_cols=221 Identities=15% Similarity=0.084 Sum_probs=124.3
Q ss_pred CccEEecCCCCCCcc--cCh--hHHHhccccceEEeccccceeeeecccccccccccccc--CCCCCccEEEEeecCccc
Q 039375 9 KLRLLDLRDCFHLKV--IAP--NVISSLIRLEELCMGNCSVEWEVERANTERSNASLDEL--MLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~--lp~--~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l--~~L~~L~~L~l~~~~~~~ 82 (311)
.++.|.+.++ .+.. +.. .. ..+.+|++|++++|.+.... | ..+ +.+++|++|++++|.+..
T Consensus 65 ~l~~l~l~~~-~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~--~---------~~~~~~~~~~L~~L~Ls~n~i~~ 131 (310)
T 4glp_A 65 RVRRLTVGAA-QVPAQLLVGALRV-LAYSRLKELTLEDLKITGTM--P---------PLPLEATGLALSSLRLRNVSWAT 131 (310)
T ss_dssp CCCEEEECSC-CCBHHHHHHHHHH-HHHSCCCEEEEESCCCBSCC--C---------CCSSSCCCBCCSSCEEESCCCSS
T ss_pred ceeEEEEeCC-cCCHHHHHHHHHh-cccCceeEEEeeCCEeccch--h---------hhhhhccCCCCCEEEeecccccc
Confidence 4677788774 3331 111 11 34567999999998877555 4 555 788889999998888654
Q ss_pred ccc-----cc-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcce--ec
Q 039375 83 LQE-----GF-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINN--VE 154 (311)
Q Consensus 83 lp~-----~~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~--~~ 154 (311)
... .+ .+++|+.++++.+. +....|. .+ +.+++++.+.+.. ..-... +.
T Consensus 132 ~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~--~~----------~~l~~L~~L~Ls~---------N~l~~~~~~~ 188 (310)
T 4glp_A 132 GRSWLAELQQWLKPGLKVLSIAQAH--SPAFSCE--QV----------RAFPALTSLDLSD---------NPGLGERGLM 188 (310)
T ss_dssp TTSSHHHHHTTBCSCCCEEEEECCS--SCCCCTT--SC----------CCCTTCCEEECCS---------CTTCHHHHHH
T ss_pred hhhhhHHHHhhhccCCCEEEeeCCC--cchhhHH--Hh----------ccCCCCCEEECCC---------CCCccchhhh
Confidence 211 11 37788888887433 1111110 11 3344444444332 221110 00
Q ss_pred cccc-ccccccceEEEec-eEecccccccCcccccccEEeCCCC-cccccCccEEEEecCCCceeecCccccccC---CC
Q 039375 155 YISQ-SRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSS-SVSFRNLTKLVAVGCKELIHLVTSSTAKTL---VR 228 (311)
Q Consensus 155 ~~~~-~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l---~~ 228 (311)
.... ..+++|++|++++ .+...+.. +.+ ...+++|+.|++++| ++++. .+..+..+ ++
T Consensus 189 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~--------------~~~l~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~~~~~~~ 252 (310)
T 4glp_A 189 AALCPHKFPAIQNLALRNTGMETPTGV--------------CAALAAAGVQPHSLDLSHN-SLRAT-VNPSAPRCMWSSA 252 (310)
T ss_dssp TTSCTTSSCCCCSCBCCSSCCCCHHHH--------------HHHHHHHTCCCSSEECTTS-CCCCC-CCSCCSSCCCCTT
T ss_pred HHHhhhcCCCCCEEECCCCCCCchHHH--------------HHHHHhcCCCCCEEECCCC-CCCcc-chhhHHhccCcCc
Confidence 0000 3566777777765 11100000 000 234678999999999 77773 23333443 79
Q ss_pred CCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCC
Q 039375 229 LVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCP 296 (311)
Q Consensus 229 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~ 296 (311)
|++|++++|. ++.+.. ..+++|++|+++++. ++.+. ....+++|++|++.+.+
T Consensus 253 L~~L~Ls~N~-l~~lp~----------~~~~~L~~L~Ls~N~-l~~~~---~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 253 LNSLNLSFAG-LEQVPK----------GLPAKLRVLDLSSNR-LNRAP---QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCEECCSSC-CCSCCS----------CCCSCCSCEECCSCC-CCSCC---CTTSCCCCSCEECSSTT
T ss_pred CCEEECCCCC-CCchhh----------hhcCCCCEEECCCCc-CCCCc---hhhhCCCccEEECcCCC
Confidence 9999998765 334421 234789999998763 55542 13567888888887753
No 87
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.22 E-value=3.9e-11 Score=99.27 Aligned_cols=148 Identities=16% Similarity=0.148 Sum_probs=90.8
Q ss_pred cEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc-ccccc-
Q 039375 11 RLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL-QEGFL- 88 (311)
Q Consensus 11 ~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l-p~~~~- 88 (311)
+.++.++ +.++.+|..+ . .+|++|++++|.+. .+. + ..+..+++|+.|++++|.+..+ |..+.
T Consensus 14 ~~v~c~~-~~l~~iP~~l-~--~~l~~L~l~~n~i~-~i~-~---------~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~ 78 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPTNL-P--ETITEIRLEQNTIK-VIP-P---------GAFSPYKKLRRIDLSNNQISELAPDAFQG 78 (220)
T ss_dssp TEEECTT-SCCSSCCSSC-C--TTCCEEECCSSCCC-EEC-T---------TSSTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEcCC-CCcCcCCCcc-C--cCCCEEECCCCcCC-CcC-H---------hHhhCCCCCCEEECCCCcCCCcCHHHhhC
Confidence 5677777 6777777755 3 57888888888776 442 3 4667778888888887776665 33342
Q ss_pred cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccceEE
Q 039375 89 ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLF 168 (311)
Q Consensus 89 l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 168 (311)
+++|+.++++.+. +..+| ......+++|+.|+
T Consensus 79 l~~L~~L~Ls~N~---l~~l~---------------------------------------------~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 79 LRSLNSLVLYGNK---ITELP---------------------------------------------KSLFEGLFSLQLLL 110 (220)
T ss_dssp CSSCCEEECCSSC---CCCCC---------------------------------------------TTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCc---CCccC---------------------------------------------HhHccCCCCCCEEE
Confidence 6666666654211 00000 00003455666666
Q ss_pred Eec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375 169 IRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA 239 (311)
Q Consensus 169 l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~ 239 (311)
+++ .+... .+..+..+++|+.|++++| +++. .++..+..+++|+.|++++|+.
T Consensus 111 L~~N~l~~~----------------~~~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANKINCL----------------RVDAFQDLHNLNLLSLYDN-KLQT-IAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCC----------------CTTTTTTCTTCCEEECCSS-CCSC-CCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEe----------------CHHHcCCCCCCCEEECCCC-cCCE-ECHHHHhCCCCCCEEEeCCCCc
Confidence 654 11111 0122455778888888888 7777 4556677888888998887763
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.21 E-value=1.7e-11 Score=116.26 Aligned_cols=170 Identities=14% Similarity=0.149 Sum_probs=110.3
Q ss_pred CCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375 5 GQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ 84 (311)
Q Consensus 5 ~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp 84 (311)
..|.+|++|++++ +.+..+|. + +.+++|++|++++|.+. .+ ..+..+++|+.|+++.|.+..+|
T Consensus 40 ~~L~~L~~L~l~~-n~i~~l~~-l-~~l~~L~~L~Ls~N~l~-~~------------~~l~~l~~L~~L~Ls~N~l~~l~ 103 (605)
T 1m9s_A 40 NELNSIDQIIANN-SDIKSVQG-I-QYLPNVTKLFLNGNKLT-DI------------KPLTNLKNLGWLFLDENKIKDLS 103 (605)
T ss_dssp HHHTTCCCCBCTT-CCCCCCTT-G-GGCTTCCEEECTTSCCC-CC------------GGGGGCTTCCEEECCSSCCCCCT
T ss_pred hcCCCCCEEECcC-CCCCCChH-H-ccCCCCCEEEeeCCCCC-CC------------hhhccCCCCCEEECcCCCCCCCh
Confidence 4578899999998 67888874 4 89999999999999886 44 23778899999999988888877
Q ss_pred cccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccccccc
Q 039375 85 EGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLT 164 (311)
Q Consensus 85 ~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L 164 (311)
....+++|+.|+++.+. +..++ .+ ..+++|+.|.+..+ .++.+ .....+++|
T Consensus 104 ~l~~l~~L~~L~Ls~N~---l~~l~---~l----------~~l~~L~~L~Ls~N----------~l~~l--~~l~~l~~L 155 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNG---ISDIN---GL----------VHLPQLESLYLGNN----------KITDI--TVLSRLTKL 155 (605)
T ss_dssp TSTTCTTCCEEECTTSC---CCCCG---GG----------GGCTTCSEEECCSS----------CCCCC--GGGGSCTTC
T ss_pred hhccCCCCCEEEecCCC---CCCCc---cc----------cCCCccCEEECCCC----------ccCCc--hhhcccCCC
Confidence 54458888888775322 11111 12 34444444444332 11111 011566777
Q ss_pred ceEEEeceEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375 165 VSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA 239 (311)
Q Consensus 165 ~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~ 239 (311)
+.|++++. .+. +......+++|+.|++++| +++++ ..+..+++|+.|++++|..
T Consensus 156 ~~L~Ls~N--~l~---------------~~~~l~~l~~L~~L~Ls~N-~i~~l---~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 156 DTLSLEDN--QIS---------------DIVPLAGLTKLQNLYLSKN-HISDL---RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp SEEECCSS--CCC---------------CCGGGTTCTTCCEEECCSS-CCCBC---GGGTTCTTCSEEECCSEEE
T ss_pred CEEECcCC--cCC---------------CchhhccCCCCCEEECcCC-CCCCC---hHHccCCCCCEEEccCCcC
Confidence 77777651 000 0011445678888888888 77763 3467788888888887754
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.21 E-value=1.9e-11 Score=106.64 Aligned_cols=202 Identities=15% Similarity=0.080 Sum_probs=127.3
Q ss_pred CCCCccEEecCCCCCCc-ccChhHH-HhccccceEEeccccceeeeeccccccccccccccCCC-----CCccEEEEeec
Q 039375 6 QVTKLRLLDLRDCFHLK-VIAPNVI-SSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLL-----PWLTTLEIDVK 78 (311)
Q Consensus 6 ~L~~L~~L~L~~c~~l~-~lp~~i~-~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L-----~~L~~L~l~~~ 78 (311)
++++|++|++++ +.++ .+|..++ +.+++|++|++++|.+. .+ | ..++.+ ++|++|++++|
T Consensus 93 ~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~--~---------~~~~~l~~~~~~~L~~L~L~~N 159 (312)
T 1wwl_A 93 GISGLQELTLEN-LEVTGTAPPPLLEATGPDLNILNLRNVSWA-TR--D---------AWLAELQQWLKPGLKVLSIAQA 159 (312)
T ss_dssp TTSCCCEEEEEE-EBCBSCCCCCSSSCCSCCCSEEEEESCBCS-SS--S---------SHHHHHHTTCCTTCCEEEEESC
T ss_pred CcCCccEEEccC-CcccchhHHHHHHhcCCCccEEEccCCCCc-ch--h---------HHHHHHHHhhcCCCcEEEeeCC
Confidence 689999999999 5665 6777643 78999999999999987 44 4 444444 89999999999
Q ss_pred Cccccc-cccc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceec-c
Q 039375 79 NDSILQ-EGFL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVE-Y 155 (311)
Q Consensus 79 ~~~~lp-~~~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~-~ 155 (311)
.+..++ ..+. +++|+.++++.+. +.+..+..... .-+.+++++.+.+ +++ .++.+. .
T Consensus 160 ~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~--------~~~~l~~L~~L~L---------~~N-~l~~~~~~ 219 (312)
T 1wwl_A 160 HSLNFSCEQVRVFPALSTLDLSDNP--ELGERGLISAL--------CPLKFPTLQVLAL---------RNA-GMETPSGV 219 (312)
T ss_dssp SCCCCCTTTCCCCSSCCEEECCSCT--TCHHHHHHHHS--------CTTSCTTCCEEEC---------TTS-CCCCHHHH
T ss_pred CCccchHHHhccCCCCCEEECCCCC--cCcchHHHHHH--------HhccCCCCCEEEC---------CCC-cCcchHHH
Confidence 988877 4553 8999999886332 22110000000 0033444444444 332 122110 0
Q ss_pred c-cc-ccccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEE
Q 039375 156 I-SQ-SRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTV 232 (311)
Q Consensus 156 ~-~~-~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L 232 (311)
. .. ..+++|+.|++++ .+.... + ......+++|+.|++++| +++. .+ ..+. ++|++|
T Consensus 220 ~~~~~~~l~~L~~L~Ls~N~l~~~~----~-----------~~~~~~l~~L~~L~Ls~N-~l~~-ip-~~~~--~~L~~L 279 (312)
T 1wwl_A 220 CSALAAARVQLQGLDLSHNSLRDAA----G-----------APSCDWPSQLNSLNLSFT-GLKQ-VP-KGLP--AKLSVL 279 (312)
T ss_dssp HHHHHHTTCCCSEEECTTSCCCSSC----C-----------CSCCCCCTTCCEEECTTS-CCSS-CC-SSCC--SEEEEE
T ss_pred HHHHHhcCCCCCEEECCCCcCCccc----c-----------hhhhhhcCCCCEEECCCC-ccCh-hh-hhcc--CCceEE
Confidence 0 00 3567899999876 111110 0 011334689999999999 7886 33 3333 899999
Q ss_pred eeccCcCceEEeccCCcccccccccccccceeeccccc
Q 039375 233 QVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLD 270 (311)
Q Consensus 233 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~ 270 (311)
++++|. +..+.. ...+++|++|.+.+.+
T Consensus 280 ~Ls~N~-l~~~p~---------~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 280 DLSYNR-LDRNPS---------PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ECCSSC-CCSCCC---------TTTSCEEEEEECTTCT
T ss_pred ECCCCC-CCCChh---------HhhCCCCCEEeccCCC
Confidence 999875 333311 2568899999998764
No 90
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.19 E-value=2.2e-10 Score=108.95 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=64.9
Q ss_pred CCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccc
Q 039375 194 PSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLT 273 (311)
Q Consensus 194 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~ 273 (311)
|.....+++|+.|++++| +++. .++..+..+++|++|++++|. +..+.. .....+++|++|+++++. +.
T Consensus 487 ~~~~~~l~~L~~L~Ls~N-~L~~-l~~~~f~~l~~L~~L~Ls~N~-l~~l~~-------~~~~~l~~L~~L~Ls~N~-l~ 555 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQC-QLEQ-LSPTAFNSLSSLQVLNMSHNN-FFSLDT-------FPYKCLNSLQVLDYSLNH-IM 555 (635)
T ss_dssp CSCCTTCTTCCEEECTTS-CCCE-ECTTTTTTCTTCCEEECTTSC-CCBCCC-------GGGTTCTTCCEEECTTSC-CC
T ss_pred chhhhhccccCEEECCCC-ccCC-cChHHHcCCCCCCEEECCCCc-CCCCCh-------hHHhCCCCCCEEECCCCc-CC
Confidence 344667889999999999 8998 566778999999999999875 444422 123567889999999864 66
Q ss_pred eeccCCceecC-CCccEEEEec
Q 039375 274 SFCSANYTFKF-PSLEYLEVIG 294 (311)
Q Consensus 274 ~~~~~~~~~~~-~~L~~L~i~~ 294 (311)
.+.+. ....+ ++|++|++++
T Consensus 556 ~~~~~-~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 556 TSKKQ-ELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp BCCSS-CTTCCCTTCCEEECTT
T ss_pred CCCHH-HHHhhhCcCCEEEeeC
Confidence 65432 22334 6899999976
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.18 E-value=5.1e-12 Score=119.61 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=43.0
Q ss_pred ccCccEEEEecCCCceeecCccccc-cCCCCCEEeecc---CcCceEEeccCCcccccccccccccceeecccccc-cce
Q 039375 200 FRNLTKLVAVGCKELIHLVTSSTAK-TLVRLVTVQVYG---CRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDS-LTS 274 (311)
Q Consensus 200 l~~L~~L~l~~~~~l~~l~~~~~l~-~l~~L~~L~l~~---c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~-l~~ 274 (311)
+++|+.|+++.+ ++++ .....+. .+++|+.|++++ |+.++...... ..+.-...+++|++|.+.+|.. +..
T Consensus 377 ~~~L~~L~l~~~-~l~~-~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~--~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 377 CQELEYMAVYVS-DITN-ESLESIGTYLKNLCDFRLVLLDREERITDLPLDN--GVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp CTTCSEEEEEES-CCCH-HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH--HHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred CccCeEEEeecC-CccH-HHHHHHHhhCCCCcEEEEeecCCCccccCchHHH--HHHHHHHhCCCCCEEEEecCCCCccH
Confidence 556666666444 5554 2222232 366666666653 33333211000 0000113466777777765543 221
Q ss_pred eccCCceecCCCccEEEEecCC
Q 039375 275 FCSANYTFKFPSLEYLEVIGCP 296 (311)
Q Consensus 275 ~~~~~~~~~~~~L~~L~i~~c~ 296 (311)
.........+++|++|++++|.
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSCC
T ss_pred HHHHHHHHhCccceEeeccCCC
Confidence 1111112246778888887764
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.18 E-value=4.4e-11 Score=101.76 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=28.5
Q ss_pred cccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375 197 SVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA 239 (311)
Q Consensus 197 ~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~ 239 (311)
...+++|+.|++++| +++++ ..+..+++|+.|++++|..
T Consensus 146 l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp GGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEEEEE
T ss_pred HccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeCCCCcc
Confidence 445678888888888 77763 4567788888888887653
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.13 E-value=4.2e-12 Score=114.05 Aligned_cols=260 Identities=15% Similarity=0.060 Sum_probs=138.4
Q ss_pred ccCCCCCccEEecCCCCCCccc-ChhH---HHhccccceEEeccccceeeeec--cccccccccccccCCCCCccEEEEe
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVI-APNV---ISSLIRLEELCMGNCSVEWEVER--ANTERSNASLDELMLLPWLTTLEID 76 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~l-p~~i---~~~L~~Lq~L~l~~~~~~~~~~~--p~~~~~~~~l~~l~~L~~L~~L~l~ 76 (311)
.+..+++|++|+|++ +.++.. +..+ +.++++|++|++++|.+. .+.+ | ..-......+..+++|++|+++
T Consensus 27 ~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~-~l~~~~~--~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSG-NTIGTEAARWLSENIASKKDLEIAEFSDIFTG-RVKDEIP--EALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp HHHHCSCCCEEECTT-SEECHHHHHHHHHTTTTCTTCCEEECCSCCTT-SCGGGSH--HHHHHHHHHHTTCTTCCEEECC
T ss_pred HHhcCCCccEEECCC-CCCCHHHHHHHHHHHHhCCCccEEeCcccccC-ccccchh--HHHHHHHHHHhhCCcccEEECC
Confidence 345678899999999 466643 2221 257889999999987543 2211 2 0000111334788999999999
Q ss_pred ecCccc-----cccccc-cccCcEEEEEecCcccc--cccccccccccccccccccccccccccccccCceeeEEccccC
Q 039375 77 VKNDSI-----LQEGFL-ARKLERFKISIGNESFM--ASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQ 148 (311)
Q Consensus 77 ~~~~~~-----lp~~~~-l~~L~~l~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~ 148 (311)
.|.+.. +|..+. +++|+.++++.+...-. ..++. .+ .......+.+..++ ++.|.+..+.
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--~l-~~l~~~~~~~~~~~---------L~~L~L~~n~ 170 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--AL-QELAVNKKAKNAPP---------LRSIICGRNR 170 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HH-HHHHHHHHHHTCCC---------CCEEECCSSC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--HH-HHHhhhhhcccCCC---------CcEEECCCCC
Confidence 888665 666664 78999998863321100 00000 00 00000000000023 3445554332
Q ss_pred Ccceeccc---cc-ccccccceEEEeceEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCcee---ecCcc
Q 039375 149 AINNVEYI---SQ-SRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIH---LVTSS 221 (311)
Q Consensus 149 ~~~~~~~~---~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~---l~~~~ 221 (311)
++....+ .. ..+++|++|++++. .+... ++..+ .+.....+++|+.|++++| ++++ ...+.
T Consensus 171 -l~~~~~~~l~~~l~~~~~L~~L~L~~n--~l~~~-----g~~~l---~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~ 238 (386)
T 2ca6_A 171 -LENGSMKEWAKTFQSHRLLHTVKMVQN--GIRPE-----GIEHL---LLEGLAYCQELKVLDLQDN-TFTHLGSSALAI 238 (386)
T ss_dssp -CTGGGHHHHHHHHHHCTTCCEEECCSS--CCCHH-----HHHHH---HHTTGGGCTTCCEEECCSS-CCHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHhCCCcCEEECcCC--CCCHh-----HHHHH---HHHHhhcCCCccEEECcCC-CCCcHHHHHHHH
Confidence 2211111 01 45678888888761 11000 00000 0112456788999999999 6742 02245
Q ss_pred ccccCCCCCEEeeccCcCceEEeccCCccccccc--ccccccceeecccccccce-----eccCCceecCCCccEEEEec
Q 039375 222 TAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEE--IVFSKLKALILCDLDSLTS-----FCSANYTFKFPSLEYLEVIG 294 (311)
Q Consensus 222 ~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~--~~~~~L~~L~i~~~~~l~~-----~~~~~~~~~~~~L~~L~i~~ 294 (311)
.+..+++|++|++++|........ ..+... +.+++|++|.+++|. +.. +.. .....+++|++|++.+
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~----~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~-~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAA----AVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKT-VIDEKMPDLLFLELNG 312 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHH----HHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHH-HHHHHCTTCCEEECTT
T ss_pred HHccCCCcCEEECCCCCCchhhHH----HHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHH-HHHhcCCCceEEEccC
Confidence 677889999999998863222000 001111 237889999998874 443 321 0113578999999988
Q ss_pred CC
Q 039375 295 CP 296 (311)
Q Consensus 295 c~ 296 (311)
|+
T Consensus 313 N~ 314 (386)
T 2ca6_A 313 NR 314 (386)
T ss_dssp SB
T ss_pred Cc
Confidence 74
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.13 E-value=1.8e-10 Score=109.16 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=108.2
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
.++.|++|++|+|++ +.+..+|+ + +++++|++|++++|.+. .+ ..+..+++|+.|+++.|.+..
T Consensus 60 ~l~~l~~L~~L~Ls~-N~l~~~~~-l-~~l~~L~~L~Ls~N~l~-~l------------~~l~~l~~L~~L~Ls~N~l~~ 123 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNG-NKLTDIKP-L-TNLKNLGWLFLDENKIK-DL------------SSLKDLKKLKSLSLEHNGISD 123 (605)
T ss_dssp TGGGCTTCCEEECTT-SCCCCCGG-G-GGCTTCCEEECCSSCCC-CC------------TTSTTCTTCCEEECTTSCCCC
T ss_pred HHccCCCCCEEEeeC-CCCCCChh-h-ccCCCCCEEECcCCCCC-CC------------hhhccCCCCCEEEecCCCCCC
Confidence 578899999999999 68888887 4 99999999999999886 44 678899999999999999888
Q ss_pred cccccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccccc
Q 039375 83 LQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRIT 162 (311)
Q Consensus 83 lp~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~ 162 (311)
++....+++|+.|+++.+.. ..++ .+ ..+++|+.|.+.. + .+..+.. ...++
T Consensus 124 l~~l~~l~~L~~L~Ls~N~l---~~l~---~l----------~~l~~L~~L~Ls~---------N-~l~~~~~--l~~l~ 175 (605)
T 1m9s_A 124 INGLVHLPQLESLYLGNNKI---TDIT---VL----------SRLTKLDTLSLED---------N-QISDIVP--LAGLT 175 (605)
T ss_dssp CGGGGGCTTCSEEECCSSCC---CCCG---GG----------GSCTTCSEEECCS---------S-CCCCCGG--GTTCT
T ss_pred CccccCCCccCEEECCCCcc---CCch---hh----------cccCCCCEEECcC---------C-cCCCchh--hccCC
Confidence 87655689999999864321 1111 12 4445555554433 2 1222211 16788
Q ss_pred ccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCcee
Q 039375 163 LTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIH 216 (311)
Q Consensus 163 ~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~ 216 (311)
+|+.|++++ .+... ..+..+++|+.|++++| .+..
T Consensus 176 ~L~~L~Ls~N~i~~l------------------~~l~~l~~L~~L~L~~N-~l~~ 211 (605)
T 1m9s_A 176 KLQNLYLSKNHISDL------------------RALAGLKNLDVLELFSQ-ECLN 211 (605)
T ss_dssp TCCEEECCSSCCCBC------------------GGGTTCTTCSEEECCSE-EEEC
T ss_pred CCCEEECcCCCCCCC------------------hHHccCCCCCEEEccCC-cCcC
Confidence 999999876 11111 12456889999999999 6665
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.12 E-value=3.7e-10 Score=91.61 Aligned_cols=83 Identities=17% Similarity=0.132 Sum_probs=48.7
Q ss_pred ccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceecc
Q 039375 198 VSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCS 277 (311)
Q Consensus 198 ~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~ 277 (311)
..+++|+.|++++| ++++ ..+..+..+++|++|++++|..++++. ....+++|++|.+.++. ++.+.
T Consensus 109 ~~l~~L~~L~Ls~n-~i~~-~~~~~l~~l~~L~~L~L~~n~~i~~~~---------~l~~l~~L~~L~l~~n~-i~~~~- 175 (197)
T 4ezg_A 109 SGLTSLTLLDISHS-AHDD-SILTKINTLPKVNSIDLSYNGAITDIM---------PLKTLPELKSLNIQFDG-VHDYR- 175 (197)
T ss_dssp TTCTTCCEEECCSS-BCBG-GGHHHHTTCSSCCEEECCSCTBCCCCG---------GGGGCSSCCEEECTTBC-CCCCT-
T ss_pred cCCCCCCEEEecCC-ccCc-HhHHHHhhCCCCCEEEccCCCCccccH---------hhcCCCCCCEEECCCCC-CcChH-
Confidence 34566677777766 5554 334556667777777777665444441 12456667777776653 44432
Q ss_pred CCceecCCCccEEEEecC
Q 039375 278 ANYTFKFPSLEYLEVIGC 295 (311)
Q Consensus 278 ~~~~~~~~~L~~L~i~~c 295 (311)
....+++|++|++.+.
T Consensus 176 --~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 176 --GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp --TGGGCSSCCEEEECBC
T ss_pred --HhccCCCCCEEEeeCc
Confidence 2345677777777664
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.11 E-value=2.8e-10 Score=93.06 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=29.2
Q ss_pred ccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCc
Q 039375 198 VSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCR 238 (311)
Q Consensus 198 ~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~ 238 (311)
..+++|+.|+++++ +++. .+...+..+++|++|++++|.
T Consensus 121 ~~l~~L~~L~l~~N-~l~~-~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 121 DKLTQLKDLRLYQN-QLKS-VPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTCTTCCEEECCSS-CCSC-CCTTTTTTCTTCCEEECCSCC
T ss_pred ccCCcCCEEECCCC-ccce-eCHHHhccCCCccEEEecCCC
Confidence 45678888888888 7776 455556778888888888775
No 97
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.10 E-value=3.2e-12 Score=120.97 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=22.4
Q ss_pred CCCCccEEecCCCC-CCc-ccChhHHHhccccceEEeccc
Q 039375 6 QVTKLRLLDLRDCF-HLK-VIAPNVISSLIRLEELCMGNC 43 (311)
Q Consensus 6 ~L~~L~~L~L~~c~-~l~-~lp~~i~~~L~~Lq~L~l~~~ 43 (311)
.+++|++|++++|. .+. .....++.++++|++|++++|
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 56678888888754 122 111222345677888877776
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.10 E-value=1.6e-10 Score=99.68 Aligned_cols=151 Identities=18% Similarity=0.198 Sum_probs=107.1
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
.++.+++|++|++++ +.++.+++ + +++++|++|++++|.+. .+ ..++.+++|++|+++.|.+..
T Consensus 63 ~~~~l~~L~~L~L~~-n~l~~~~~-l-~~l~~L~~L~l~~n~l~-~~------------~~l~~l~~L~~L~L~~n~i~~ 126 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNG-NKLTDIKP-L-ANLKNLGWLFLDENKVK-DL------------SSLKDLKKLKSLSLEHNGISD 126 (291)
T ss_dssp TGGGCTTCCEEECCS-SCCCCCGG-G-TTCTTCCEEECCSSCCC-CG------------GGGTTCTTCCEEECTTSCCCC
T ss_pred hHhcCCCCCEEEccC-CccCCCcc-c-ccCCCCCEEECCCCcCC-CC------------hhhccCCCCCEEECCCCcCCC
Confidence 467899999999999 78888887 5 99999999999999886 44 568899999999999999888
Q ss_pred cccccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccccc
Q 039375 83 LQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRIT 162 (311)
Q Consensus 83 lp~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~ 162 (311)
++....+++|+.++++.+.. ..++ .+ ..+++++.+.+.+ + .++.... ...++
T Consensus 127 ~~~l~~l~~L~~L~l~~n~l---~~~~---~l----------~~l~~L~~L~L~~---------N-~l~~~~~--l~~l~ 178 (291)
T 1h6t_A 127 INGLVHLPQLESLYLGNNKI---TDIT---VL----------SRLTKLDTLSLED---------N-QISDIVP--LAGLT 178 (291)
T ss_dssp CGGGGGCTTCCEEECCSSCC---CCCG---GG----------GGCTTCSEEECCS---------S-CCCCCGG--GTTCT
T ss_pred ChhhcCCCCCCEEEccCCcC---Ccch---hh----------ccCCCCCEEEccC---------C-ccccchh--hcCCC
Confidence 86555689999998863321 1111 12 4445555554433 2 1222211 16778
Q ss_pred ccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCcee
Q 039375 163 LTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIH 216 (311)
Q Consensus 163 ~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~ 216 (311)
+|+.|++++ .+.+. .....+++|+.|++++| .++.
T Consensus 179 ~L~~L~L~~N~i~~l------------------~~l~~l~~L~~L~l~~n-~i~~ 214 (291)
T 1h6t_A 179 KLQNLYLSKNHISDL------------------RALAGLKNLDVLELFSQ-ECLN 214 (291)
T ss_dssp TCCEEECCSSCCCBC------------------GGGTTCTTCSEEEEEEE-EEEC
T ss_pred ccCEEECCCCcCCCC------------------hhhccCCCCCEEECcCC-cccC
Confidence 899999876 11111 11456789999999999 6665
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.10 E-value=3.4e-10 Score=94.12 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=102.8
Q ss_pred CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc-
Q 039375 9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF- 87 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~- 87 (311)
..+.++.++ +.++.+|.++ . .+|++|++++|.+.... | ..+..+++|+.|++++|.+..+|...
T Consensus 20 s~~~v~c~~-~~l~~ip~~~-~--~~L~~L~Ls~n~i~~~~--~---------~~~~~l~~L~~L~L~~N~l~~i~~~~~ 84 (229)
T 3e6j_A 20 SGTTVDCRS-KRHASVPAGI-P--TNAQILYLHDNQITKLE--P---------GVFDSLINLKELYLGSNQLGALPVGVF 84 (229)
T ss_dssp ETTEEECTT-SCCSSCCSCC-C--TTCSEEECCSSCCCCCC--T---------TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred eCCEeEccC-CCcCccCCCC-C--CCCCEEEcCCCccCccC--H---------HHhhCccCCcEEECCCCCCCCcChhhc
Confidence 456788888 7888898865 3 78999999999887443 4 67788899999999998888887654
Q ss_pred -ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccce
Q 039375 88 -LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVS 166 (311)
Q Consensus 88 -~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~ 166 (311)
.+++|+.++++.+. + ..+| ......+++|+.
T Consensus 85 ~~l~~L~~L~Ls~N~--l-~~l~---------------------------------------------~~~~~~l~~L~~ 116 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQ--L-TVLP---------------------------------------------SAVFDRLVHLKE 116 (229)
T ss_dssp TTCTTCCEEECCSSC--C-CCCC---------------------------------------------TTTTTTCTTCCE
T ss_pred ccCCCcCEEECCCCc--C-CccC---------------------------------------------hhHhCcchhhCe
Confidence 37777777765221 0 0000 000044567777
Q ss_pred EEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375 167 LFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA 239 (311)
Q Consensus 167 L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~ 239 (311)
|++++ .+..+ |.....+++|+.|++++| +++. .+...+..+++|+.|++++|+.
T Consensus 117 L~Ls~N~l~~l-----------------p~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 117 LFMCCNKLTEL-----------------PRGIERLTHLTHLALDQN-QLKS-IPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp EECCSSCCCSC-----------------CTTGGGCTTCSEEECCSS-CCCC-CCTTTTTTCTTCCEEECTTSCB
T ss_pred EeccCCccccc-----------------CcccccCCCCCEEECCCC-cCCc-cCHHHHhCCCCCCEEEeeCCCc
Confidence 77765 11111 222456789999999999 8887 4556778899999999998764
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.07 E-value=1.8e-10 Score=102.56 Aligned_cols=40 Identities=10% Similarity=-0.027 Sum_probs=28.2
Q ss_pred ccccCccEEEEecCCCceeecCccccccCCC--CCEEeeccCcC
Q 039375 198 VSFRNLTKLVAVGCKELIHLVTSSTAKTLVR--LVTVQVYGCRA 239 (311)
Q Consensus 198 ~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~--L~~L~l~~c~~ 239 (311)
..+++|+.|+++++ +++. .+...+..++. ++.|++.+|+.
T Consensus 160 ~~l~~L~~L~L~~N-~l~~-l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 160 NKLPKLMLLDLSSN-KLKK-LPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp --CTTCCEEECCSS-CCCC-CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ccCCcCCEEECCCC-CCCc-cCHHHhhhccHhhcceEEecCCCc
Confidence 34778888999888 7887 45556666776 47788887653
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=101.70 Aligned_cols=208 Identities=14% Similarity=0.060 Sum_probs=128.0
Q ss_pred CCCccEEecCCCCCCc-ccChhHH-HhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375 7 VTKLRLLDLRDCFHLK-VIAPNVI-SSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ 84 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~-~lp~~i~-~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp 84 (311)
+.+|++|++++| .+. ..|..++ +++++|++|++++|.+.... + ......+..+++|++|++++|.+..++
T Consensus 90 ~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--~-----~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 161 (310)
T 4glp_A 90 YSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGR--S-----WLAELQQWLKPGLKVLSIAQAHSPAFS 161 (310)
T ss_dssp HSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT--S-----SHHHHHTTBCSCCCEEEEECCSSCCCC
T ss_pred cCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchh--h-----hhHHHHhhhccCCCEEEeeCCCcchhh
Confidence 467999999995 555 5565543 78999999999999886322 1 000034457899999999999987777
Q ss_pred c-cc-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccc---ccc
Q 039375 85 E-GF-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYI---SQS 159 (311)
Q Consensus 85 ~-~~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~---~~~ 159 (311)
. .+ .+++|+.++++.+.......++..... +.+++++++.+..+ .++.+... ...
T Consensus 162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~----------~~l~~L~~L~Ls~N----------~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCP----------HKFPAIQNLALRNT----------GMETPTGVCAALAA 221 (310)
T ss_dssp TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT----------TSSCCCCSCBCCSS----------CCCCHHHHHHHHHH
T ss_pred HHHhccCCCCCEEECCCCCCccchhhhHHHhh----------hcCCCCCEEECCCC----------CCCchHHHHHHHHh
Confidence 5 44 489999999874431110111100001 45566777666543 12211110 004
Q ss_pred cccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCc
Q 039375 160 RITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCR 238 (311)
Q Consensus 160 ~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~ 238 (311)
.+++|++|++++ .+... . +..+.. ...+++|+.|++++| +++. .+. .+ .++|+.|++++|.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~---~--p~~~~~--------~~~~~~L~~L~Ls~N-~l~~-lp~-~~--~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRAT---V--NPSAPR--------CMWSSALNSLNLSFA-GLEQ-VPK-GL--PAKLRVLDLSSNR 283 (310)
T ss_dssp HTCCCSSEECTTSCCCCC---C--CSCCSS--------CCCCTTCCCEECCSS-CCCS-CCS-CC--CSCCSCEECCSCC
T ss_pred cCCCCCEEECCCCCCCcc---c--hhhHHh--------ccCcCcCCEEECCCC-CCCc-hhh-hh--cCCCCEEECCCCc
Confidence 568999999976 11111 0 000111 122479999999999 8886 332 23 3799999999876
Q ss_pred CceEEeccCCcccccccccccccceeeccccc
Q 039375 239 AMTEVVINDKEGVDIEEIVFSKLKALILCDLD 270 (311)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~ 270 (311)
. ..+.. ...+++|+.|.+.+.+
T Consensus 284 l-~~~~~---------~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 284 L-NRAPQ---------PDELPEVDNLTLDGNP 305 (310)
T ss_dssp C-CSCCC---------TTSCCCCSCEECSSTT
T ss_pred C-CCCch---------hhhCCCccEEECcCCC
Confidence 3 33211 2468999999998764
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.05 E-value=7.5e-10 Score=91.49 Aligned_cols=150 Identities=17% Similarity=0.175 Sum_probs=100.2
Q ss_pred ccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-c-
Q 039375 10 LRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG-F- 87 (311)
Q Consensus 10 L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~-~- 87 (311)
-+++++++ +.++.+|..+ . ..+++|++++|.+. .+..+ ..++.+++|+.|++++|.+..++.. +
T Consensus 13 ~~~l~~s~-n~l~~iP~~~-~--~~~~~L~L~~N~l~-~~~~~---------~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 78 (220)
T 2v70_A 13 GTTVDCSN-QKLNKIPEHI-P--QYTAELRLNNNEFT-VLEAT---------GIFKKLPQLRKINFSNNKITDIEEGAFE 78 (220)
T ss_dssp TTEEECCS-SCCSSCCSCC-C--TTCSEEECCSSCCC-EECCC---------CCGGGCTTCCEEECCSSCCCEECTTTTT
T ss_pred CCEeEeCC-CCcccCccCC-C--CCCCEEEcCCCcCC-ccCch---------hhhccCCCCCEEECCCCcCCEECHHHhC
Confidence 46888988 7888898865 3 35789999999887 44212 3467889999999998888877763 3
Q ss_pred ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccceE
Q 039375 88 LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSL 167 (311)
Q Consensus 88 ~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L 167 (311)
.+++|+.++++.+. ++.+.......+++|+.|
T Consensus 79 ~l~~L~~L~Ls~N~------------------------------------------------l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 79 GASGVNEILLTSNR------------------------------------------------LENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TCTTCCEEECCSSC------------------------------------------------CCCCCGGGGTTCSSCCEE
T ss_pred CCCCCCEEECCCCc------------------------------------------------cCccCHhHhcCCcCCCEE
Confidence 27777777664221 000000000445677777
Q ss_pred EEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375 168 FIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA 239 (311)
Q Consensus 168 ~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~ 239 (311)
++++ .+... .+..+..+++|+.|++++| +++. ..+..+..+++|+.|++++|+.
T Consensus 111 ~Ls~N~l~~~----------------~~~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 111 MLRSNRITCV----------------GNDSFIGLSSVRLLSLYDN-QITT-VAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ECTTSCCCCB----------------CTTSSTTCTTCSEEECTTS-CCCC-BCTTTTTTCTTCCEEECCSCCE
T ss_pred ECCCCcCCeE----------------CHhHcCCCccCCEEECCCC-cCCE-ECHHHhcCCCCCCEEEecCcCC
Confidence 7765 11111 1222456788999999999 8887 5567788899999999998764
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.03 E-value=4e-11 Score=107.60 Aligned_cols=215 Identities=13% Similarity=0.037 Sum_probs=125.5
Q ss_pred ccCCCCCccEEecCCC--CCCc-ccChhH------HHhccccceEEecccccee----eeeccccccccccccccCCCCC
Q 039375 3 ALGQVTKLRLLDLRDC--FHLK-VIAPNV------ISSLIRLEELCMGNCSVEW----EVERANTERSNASLDELMLLPW 69 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c--~~l~-~lp~~i------~~~L~~Lq~L~l~~~~~~~----~~~~p~~~~~~~~l~~l~~L~~ 69 (311)
.+..+++|++|+|++| +.+. .+|.++ +.++++|++|++++|.+.. .+ | ..++.+++
T Consensus 55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l--~---------~~l~~~~~ 123 (386)
T 2ca6_A 55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL--I---------DFLSKHTP 123 (386)
T ss_dssp TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH--H---------HHHHHCTT
T ss_pred HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHH--H---------HHHHhCCC
Confidence 3668999999999996 3333 445544 2678999999999998863 13 3 67788999
Q ss_pred ccEEEEeecCcccc-----ccccc-c---------ccCcEEEEEecCcccc-ccccccc-cccccccccccccccccccc
Q 039375 70 LTTLEIDVKNDSIL-----QEGFL-A---------RKLERFKISIGNESFM-ASLPVTK-DWFRSRSHFLINHNHERLRE 132 (311)
Q Consensus 70 L~~L~l~~~~~~~l-----p~~~~-l---------~~L~~l~~~~~~~~~~-~~~p~~~-~~~~~~~~~~~~~~~~~l~~ 132 (311)
|++|++++|.+... +..+. + ++|+.++++.+. +. ..+|... .+ ...+++
T Consensus 124 L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l----------~~~~~L-- 189 (386)
T 2ca6_A 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR--LENGSMKEWAKTF----------QSHRLL-- 189 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC--CTGGGHHHHHHHH----------HHCTTC--
T ss_pred CCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC--CCcHHHHHHHHHH----------HhCCCc--
Confidence 99999999886532 22221 3 799999886332 11 1111000 00 122333
Q ss_pred ccccCceeeEEccccCCcceec----cc-ccccccccceEEEeceEecccccccCcccccccEEeCCCCcccccCccEEE
Q 039375 133 LKLKPDFTDICSMKLQAINNVE----YI-SQSRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLV 207 (311)
Q Consensus 133 l~l~~~l~~L~l~~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~ 207 (311)
+.|.+..+ .++..+ .+ ....+++|++|++++.-......... +.....+++|+.|+
T Consensus 190 -------~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l-----------~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 190 -------HTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL-----------AIALKSWPNLRELG 250 (386)
T ss_dssp -------CEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH-----------HHHGGGCTTCCEEE
T ss_pred -------CEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH-----------HHHHccCCCcCEEE
Confidence 44555444 232111 00 11567789999987611100000000 11134567899999
Q ss_pred EecCCCceeec---Ccccc--ccCCCCCEEeeccCcCceE----EeccCCccccccc-ccccccceeeccccc
Q 039375 208 AVGCKELIHLV---TSSTA--KTLVRLVTVQVYGCRAMTE----VVINDKEGVDIEE-IVFSKLKALILCDLD 270 (311)
Q Consensus 208 l~~~~~l~~l~---~~~~l--~~l~~L~~L~l~~c~~l~~----~~~~~~~~~~~~~-~~~~~L~~L~i~~~~ 270 (311)
+++| ++++.. .+..+ ..+++|++|++++|..... +. ... ..+++|++|.+.+++
T Consensus 251 L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~--------~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 251 LNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK--------TVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH--------HHHHHHCTTCCEEECTTSB
T ss_pred CCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH--------HHHHhcCCCceEEEccCCc
Confidence 9988 676521 12333 2378899999988764331 21 111 346888888888774
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.03 E-value=2.5e-10 Score=97.00 Aligned_cols=166 Identities=15% Similarity=0.150 Sum_probs=113.6
Q ss_pred CCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccc
Q 039375 6 QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQE 85 (311)
Q Consensus 6 ~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~ 85 (311)
++.++..+++++ +.++.++. +.++.+|++|++++|.+. .+ ..++.+++|+.|++++|.+..++.
T Consensus 17 ~l~~l~~l~l~~-~~i~~~~~--~~~l~~L~~L~l~~n~i~-~l------------~~l~~l~~L~~L~L~~N~i~~~~~ 80 (263)
T 1xeu_A 17 GLANAVKQNLGK-QSVTDLVS--QKELSGVQNFNGDNSNIQ-SL------------AGMQFFTNLKELHLSHNQISDLSP 80 (263)
T ss_dssp HHHHHHHHHHTC-SCTTSEEC--HHHHTTCSEEECTTSCCC-CC------------TTGGGCTTCCEEECCSSCCCCCGG
T ss_pred HHHHHHHHHhcC-CCcccccc--hhhcCcCcEEECcCCCcc-cc------------hHHhhCCCCCEEECCCCccCCChh
Confidence 355667777888 67787774 488999999999998876 55 567788889999998888888777
Q ss_pred ccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375 86 GFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV 165 (311)
Q Consensus 86 ~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~ 165 (311)
...+++|+.++++.+. + + . .+.+ .. ++|+
T Consensus 81 l~~l~~L~~L~L~~N~------------l-------------~------------~-----l~~~--------~~-~~L~ 109 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNR------------L-------------K------------N-----LNGI--------PS-ACLS 109 (263)
T ss_dssp GTTCSSCCEEECCSSC------------C-------------S------------C-----CTTC--------CC-SSCC
T ss_pred hccCCCCCEEECCCCc------------c-------------C------------C-----cCcc--------cc-Cccc
Confidence 2247777777765221 0 0 0 0001 12 5667
Q ss_pred eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEe
Q 039375 166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVV 244 (311)
Q Consensus 166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~ 244 (311)
.|++++ .+... .....+++|+.|++++| +++++ ..+..+++|+.|++++|.. ..+
T Consensus 110 ~L~L~~N~l~~~------------------~~l~~l~~L~~L~Ls~N-~i~~~---~~l~~l~~L~~L~L~~N~i-~~~- 165 (263)
T 1xeu_A 110 RLFLDNNELRDT------------------DSLIHLKNLEILSIRNN-KLKSI---VMLGFLSKLEVLDLHGNEI-TNT- 165 (263)
T ss_dssp EEECCSSCCSBS------------------GGGTTCTTCCEEECTTS-CCCBC---GGGGGCTTCCEEECTTSCC-CBC-
T ss_pred EEEccCCccCCC------------------hhhcCcccccEEECCCC-cCCCC---hHHccCCCCCEEECCCCcC-cch-
Confidence 777665 11111 11456789999999999 88874 3578899999999998753 333
Q ss_pred ccCCcccccccccccccceeeccccc
Q 039375 245 INDKEGVDIEEIVFSKLKALILCDLD 270 (311)
Q Consensus 245 ~~~~~~~~~~~~~~~~L~~L~i~~~~ 270 (311)
.....+++|+.|.+.+++
T Consensus 166 --------~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 --------GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp --------TTSTTCCCCCEEEEEEEE
T ss_pred --------HHhccCCCCCEEeCCCCc
Confidence 113568889999998864
No 105
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.03 E-value=5.4e-12 Score=115.76 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=18.3
Q ss_pred ccccceeecccccccc-----eeccCCceecCCCccEEEEecC
Q 039375 258 FSKLKALILCDLDSLT-----SFCSANYTFKFPSLEYLEVIGC 295 (311)
Q Consensus 258 ~~~L~~L~i~~~~~l~-----~~~~~~~~~~~~~L~~L~i~~c 295 (311)
.+.|++|.+.+|. +. .+. .....+++|++|++++|
T Consensus 369 ~~~L~~L~L~~n~-i~~~~~~~l~--~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 369 GSVLRVLWLADCD-VSDSSCSSLA--ATLLANHSLRELDLSNN 408 (461)
T ss_dssp TCCCCEEECTTSC-CCHHHHHHHH--HHHHHCCCCCEEECCSS
T ss_pred CCceEEEECCCCC-CChhhHHHHH--HHHHhCCCccEEECCCC
Confidence 3456666666652 33 221 12234667777777666
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.00 E-value=1.6e-09 Score=89.54 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=96.8
Q ss_pred ceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-c-ccccCcEEEEEecCcccccccccccc
Q 039375 36 EELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG-F-LARKLERFKISIGNESFMASLPVTKD 113 (311)
Q Consensus 36 q~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~-~-~l~~L~~l~~~~~~~~~~~~~p~~~~ 113 (311)
+.++.+++.+. .+ | ..+. ++|+.|++++|.+..++.. + .+++|+.++++.+.
T Consensus 14 ~~v~c~~~~l~-~i--P---------~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~------------ 67 (220)
T 2v9t_B 14 NIVDCRGKGLT-EI--P---------TNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ------------ 67 (220)
T ss_dssp TEEECTTSCCS-SC--C---------SSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC------------
T ss_pred CEEEcCCCCcC-cC--C---------CccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc------------
Confidence 57788887776 66 5 4443 6899999999998888764 3 26777777664221
Q ss_pred cccccccccccccccccccccccCceeeEEccccCCcceecccccccccccceEEEec-eEecccccccCcccccccEEe
Q 039375 114 WFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKIL 192 (311)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~ 192 (311)
++.+.......+++|+.|++++ .+..++
T Consensus 68 ------------------------------------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--------------- 96 (220)
T 2v9t_B 68 ------------------------------------ISELAPDAFQGLRSLNSLVLYGNKITELP--------------- 96 (220)
T ss_dssp ------------------------------------CCEECTTTTTTCSSCCEEECCSSCCCCCC---------------
T ss_pred ------------------------------------CCCcCHHHhhCCcCCCEEECCCCcCCccC---------------
Confidence 1001000005567888888876 111111
Q ss_pred CCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeeccccc
Q 039375 193 LPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLD 270 (311)
Q Consensus 193 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~ 270 (311)
+..+..+++|+.|+++++ +++. ..+..+..+++|++|++++|. +..+.. .....+++|+++.+.+.+
T Consensus 97 -~~~f~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~-------~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 97 -KSLFEGLFSLQLLLLNAN-KINC-LRVDAFQDLHNLNLLSLYDNK-LQTIAK-------GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp -TTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSC-CSCCCT-------TTTTTCTTCCEEECCSSC
T ss_pred -HhHccCCCCCCEEECCCC-CCCE-eCHHHcCCCCCCCEEECCCCc-CCEECH-------HHHhCCCCCCEEEeCCCC
Confidence 111456789999999999 8888 566778899999999999875 333322 112457888999888754
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.99 E-value=1.1e-09 Score=86.33 Aligned_cols=77 Identities=22% Similarity=0.173 Sum_probs=54.2
Q ss_pred CCCCccEEecCCCCCCc--ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc-
Q 039375 6 QVTKLRLLDLRDCFHLK--VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI- 82 (311)
Q Consensus 6 ~L~~L~~L~L~~c~~l~--~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~- 82 (311)
..++|++|++++ +.++ .+|..+ +++++|++|++++|.+. .+ ..++.+++|+.|++++|.+..
T Consensus 22 ~~~~L~~L~l~~-n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~-~~------------~~~~~l~~L~~L~Ls~N~l~~~ 86 (168)
T 2ell_A 22 TPAAVRELVLDN-CKSNDGKIEGLT-AEFVNLEFLSLINVGLI-SV------------SNLPKLPKLKKLELSENRIFGG 86 (168)
T ss_dssp CTTSCSEEECCS-CBCBTTBCSSCC-GGGGGCCEEEEESSCCC-CC------------SSCCCCSSCCEEEEESCCCCSC
T ss_pred CcccCCEEECCC-CCCChhhHHHHH-HhCCCCCEEeCcCCCCC-Ch------------hhhccCCCCCEEECcCCcCchH
Confidence 457788888888 4566 777765 88888888888888765 33 566778888888888777655
Q ss_pred cccccc-cccCcEEEE
Q 039375 83 LQEGFL-ARKLERFKI 97 (311)
Q Consensus 83 lp~~~~-l~~L~~l~~ 97 (311)
+|..+. +++|+.+++
T Consensus 87 ~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 87 LDMLAEKLPNLTHLNL 102 (168)
T ss_dssp CCHHHHHCTTCCEEEC
T ss_pred HHHHHhhCCCCCEEec
Confidence 444443 555555544
No 108
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.98 E-value=4.1e-11 Score=113.40 Aligned_cols=92 Identities=12% Similarity=0.006 Sum_probs=44.0
Q ss_pred ccCccEEEEecCCCceeecCccccccCCCCCEEeec-----cCcCceEEeccCCcccccccccccccceeecccccccce
Q 039375 200 FRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVY-----GCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTS 274 (311)
Q Consensus 200 l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~-----~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~ 274 (311)
+++|+.|.+..+ ++++.........+++|+.|+++ +|+.++......+ ...-...+++|++|.+.+ .+..
T Consensus 371 ~~~L~~L~~~~~-~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~--~~~l~~~~~~L~~L~L~~--~l~~ 445 (594)
T 2p1m_B 371 CPKLESVLYFCR-QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG--FGAIVEHCKDLRRLSLSG--LLTD 445 (594)
T ss_dssp CTTCCEEEEEES-CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH--HHHHHHHCTTCCEEECCS--SCCH
T ss_pred chhHHHHHHhcC-CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH--HHHHHhhCCCccEEeecC--cccH
Confidence 566666655444 55542111222346777777777 4444442211000 000013456777777755 2322
Q ss_pred eccCCceecCCCccEEEEecCC
Q 039375 275 FCSANYTFKFPSLEYLEVIGCP 296 (311)
Q Consensus 275 ~~~~~~~~~~~~L~~L~i~~c~ 296 (311)
.........+++|++|++++|.
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHHHHHhchhccEeeccCCC
Confidence 2111111237788888887764
No 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.98 E-value=8.2e-12 Score=114.55 Aligned_cols=90 Identities=14% Similarity=-0.027 Sum_probs=44.8
Q ss_pred ccCccEEEEecCCCceeecCccccc-----cCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccce
Q 039375 200 FRNLTKLVAVGCKELIHLVTSSTAK-----TLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTS 274 (311)
Q Consensus 200 l~~L~~L~l~~~~~l~~l~~~~~l~-----~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~ 274 (311)
+++|+.|++++| ++++ ..+..+. ..++|++|++++|.....-. ...+.....+++|++|++++++ +..
T Consensus 340 ~~~L~~L~Ls~n-~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~----~~l~~~l~~~~~L~~L~l~~N~-i~~ 412 (461)
T 1z7x_W 340 NRFLLELQISNN-RLED-AGVRELCQGLGQPGSVLRVLWLADCDVSDSSC----SSLAATLLANHSLRELDLSNNC-LGD 412 (461)
T ss_dssp CSSCCEEECCSS-BCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH----HHHHHHHHHCCCCCEEECCSSS-CCH
T ss_pred CCCccEEEccCC-cccc-ccHHHHHHHHcCCCCceEEEECCCCCCChhhH----HHHHHHHHhCCCccEEECCCCC-CCH
Confidence 467777777777 5555 2222221 14577777777664321000 0001122346788888888773 332
Q ss_pred eccCC----ceecCCCccEEEEecCC
Q 039375 275 FCSAN----YTFKFPSLEYLEVIGCP 296 (311)
Q Consensus 275 ~~~~~----~~~~~~~L~~L~i~~c~ 296 (311)
..... ......+|+.|.+.++.
T Consensus 413 ~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 413 AGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHHHHHhccCCcchhheeecccc
Confidence 21000 01123467777776653
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.97 E-value=1.9e-09 Score=101.30 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=49.8
Q ss_pred CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccc
Q 039375 9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFL 88 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~ 88 (311)
+|++|++++ +.++.+|.++ . ++|++|++++|.+. .+ . ..+++|+.|++++|.+..+|. +.
T Consensus 60 ~L~~L~Ls~-n~L~~lp~~l-~--~~L~~L~Ls~N~l~-~i------------p--~~l~~L~~L~Ls~N~l~~ip~-l~ 119 (571)
T 3cvr_A 60 QFSELQLNR-LNLSSLPDNL-P--PQITVLEITQNALI-SL------------P--ELPASLEYLDACDNRLSTLPE-LP 119 (571)
T ss_dssp TCSEEECCS-SCCSCCCSCC-C--TTCSEEECCSSCCS-CC------------C--CCCTTCCEEECCSSCCSCCCC-CC
T ss_pred CccEEEeCC-CCCCccCHhH-c--CCCCEEECcCCCCc-cc------------c--cccCCCCEEEccCCCCCCcch-hh
Confidence 788888888 5677788765 3 67888888888776 55 2 346788888888888777777 43
Q ss_pred cccCcEEEEE
Q 039375 89 ARKLERFKIS 98 (311)
Q Consensus 89 l~~L~~l~~~ 98 (311)
.+|+.++++
T Consensus 120 -~~L~~L~Ls 128 (571)
T 3cvr_A 120 -ASLKHLDVD 128 (571)
T ss_dssp -TTCCEEECC
T ss_pred -cCCCEEECC
Confidence 377777665
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.96 E-value=3.2e-09 Score=87.69 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=96.0
Q ss_pred cceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccc-c-c-ccccCcEEEEEecCcccccccccc
Q 039375 35 LEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQE-G-F-LARKLERFKISIGNESFMASLPVT 111 (311)
Q Consensus 35 Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~-~-~-~l~~L~~l~~~~~~~~~~~~~p~~ 111 (311)
-++++++++.+. .+ | ..+. ..++.|++++|.+..++. . + .+++|+.++++.+.
T Consensus 13 ~~~l~~s~n~l~-~i--P---------~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~---------- 68 (220)
T 2v70_A 13 GTTVDCSNQKLN-KI--P---------EHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK---------- 68 (220)
T ss_dssp TTEEECCSSCCS-SC--C---------SCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC----------
T ss_pred CCEeEeCCCCcc-cC--c---------cCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc----------
Confidence 468999999887 66 5 4443 457899999999888743 2 3 36777777664211
Q ss_pred cccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccceEEEec-eEecccccccCcccccccE
Q 039375 112 KDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDK 190 (311)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~ 190 (311)
++.+.......+++|+.|++++ .+....
T Consensus 69 --------------------------------------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~------------- 97 (220)
T 2v70_A 69 --------------------------------------ITDIEEGAFEGASGVNEILLTSNRLENVQ------------- 97 (220)
T ss_dssp --------------------------------------CCEECTTTTTTCTTCCEEECCSSCCCCCC-------------
T ss_pred --------------------------------------CCEECHHHhCCCCCCCEEECCCCccCccC-------------
Confidence 1111000005567888888876 111111
Q ss_pred EeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeeccccc
Q 039375 191 ILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLD 270 (311)
Q Consensus 191 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~ 270 (311)
+..+..+++|+.|+++++ +++. ..+..+..+++|+.|++++|. +..+.. .....+++|++|.+.+.+
T Consensus 98 ---~~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~-------~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 98 ---HKMFKGLESLKTLMLRSN-RITC-VGNDSFIGLSSVRLLSLYDNQ-ITTVAP-------GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp ---GGGGTTCSSCCEEECTTS-CCCC-BCTTSSTTCTTCSEEECTTSC-CCCBCT-------TTTTTCTTCCEEECCSCC
T ss_pred ---HhHhcCCcCCCEEECCCC-cCCe-ECHhHcCCCccCCEEECCCCc-CCEECH-------HHhcCCCCCCEEEecCcC
Confidence 111456789999999999 8887 556778889999999999875 333322 223567889999888764
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.95 E-value=1.4e-10 Score=103.22 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=59.6
Q ss_pred CCCCCccEEecCCCCCCcccCh----hHHHhcc-ccceEEeccccceeeeeccccccccccccccCCC-----CCccEEE
Q 039375 5 GQVTKLRLLDLRDCFHLKVIAP----NVISSLI-RLEELCMGNCSVEWEVERANTERSNASLDELMLL-----PWLTTLE 74 (311)
Q Consensus 5 ~~L~~L~~L~L~~c~~l~~lp~----~i~~~L~-~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L-----~~L~~L~ 74 (311)
....+|++|+|++ +.++.++. +.+.+++ +|++|++++|.+.... + ..+..+ ++|+.|+
T Consensus 19 ~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--~---------~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 19 SIPHGVTSLDLSL-NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN--S---------DELVQILAAIPANVTSLN 86 (362)
T ss_dssp TSCTTCCEEECTT-SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC--H---------HHHHHHHHTSCTTCCEEE
T ss_pred hCCCCceEEEccC-CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH--H---------HHHHHHHhccCCCccEEE
Confidence 4456699999999 57888875 4447788 8999999999886332 2 344443 8999999
Q ss_pred EeecCccccccc-cc-----c-ccCcEEEEEe
Q 039375 75 IDVKNDSILQEG-FL-----A-RKLERFKISI 99 (311)
Q Consensus 75 l~~~~~~~lp~~-~~-----l-~~L~~l~~~~ 99 (311)
+++|.+...+.. +. + ++|+.++++.
T Consensus 87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 118 (362)
T 3goz_A 87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGW 118 (362)
T ss_dssp CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred CcCCcCChHHHHHHHHHHHhCCCCccEEECcC
Confidence 999887654432 22 3 7899988863
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.92 E-value=4.3e-10 Score=91.96 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=67.0
Q ss_pred CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375 7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG 86 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~ 86 (311)
..+|++|++++ +.++.+|++.++++++|++|++++|.+. .+. + ..+..+++|++|++++|.+..+|..
T Consensus 27 ~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~---------~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 27 PAQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLP-N---------GVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCC-CCC-T---------TTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCcEEEcCC-CccCcCChhhhcccccCcEEECCCCccC-ccC-h---------hhcCCCCCcCEEECCCCcCCccCHh
Confidence 56899999999 6888898876699999999999999987 552 2 4468899999999999998888875
Q ss_pred c--ccccCcEEEEE
Q 039375 87 F--LARKLERFKIS 98 (311)
Q Consensus 87 ~--~l~~L~~l~~~ 98 (311)
. .+++|+.++++
T Consensus 95 ~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 95 VFDKLTQLKELALN 108 (208)
T ss_dssp TTTTCTTCCEEECC
T ss_pred HhcCccCCCEEEcC
Confidence 4 37888888775
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.91 E-value=2.7e-09 Score=94.84 Aligned_cols=152 Identities=12% Similarity=0.107 Sum_probs=100.9
Q ss_pred ccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccC-CCCCccEEEEeecCccccccc-c
Q 039375 10 LRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELM-LLPWLTTLEIDVKNDSILQEG-F 87 (311)
Q Consensus 10 L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~-~L~~L~~L~l~~~~~~~lp~~-~ 87 (311)
-+++++++ +.++.+|.++ . ..+++|++++|.+. .+. + ..+. .+++|+.|++++|.+..++.. +
T Consensus 20 ~~~l~c~~-~~l~~iP~~~-~--~~l~~L~Ls~N~l~-~l~-~---------~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 84 (361)
T 2xot_A 20 SNILSCSK-QQLPNVPQSL-P--SYTALLDLSHNNLS-RLR-A---------EWTPTRLTNLHSLLLSHNHLNFISSEAF 84 (361)
T ss_dssp TTEEECCS-SCCSSCCSSC-C--TTCSEEECCSSCCC-EEC-T---------TSSSSCCTTCCEEECCSSCCCEECTTTT
T ss_pred CCEEEeCC-CCcCccCccC-C--CCCCEEECCCCCCC-ccC-h---------hhhhhcccccCEEECCCCcCCccChhhc
Confidence 36788888 7888899865 4 36899999999987 552 2 4455 889999999999888887754 3
Q ss_pred -ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccce
Q 039375 88 -LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVS 166 (311)
Q Consensus 88 -~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~ 166 (311)
.+++|+.++++.+. + +.+. ......+++|+.
T Consensus 85 ~~l~~L~~L~Ls~N~------------l-------------------------~~~~-----------~~~~~~l~~L~~ 116 (361)
T 2xot_A 85 VPVPNLRYLDLSSNH------------L-------------------------HTLD-----------EFLFSDLQALEV 116 (361)
T ss_dssp TTCTTCCEEECCSSC------------C-------------------------CEEC-----------TTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCc------------C-------------------------CcCC-----------HHHhCCCcCCCE
Confidence 37777777765221 0 0000 000045667777
Q ss_pred EEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCcccc---ccCCCCCEEeeccCcCceE
Q 039375 167 LFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTA---KTLVRLVTVQVYGCRAMTE 242 (311)
Q Consensus 167 L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l---~~l~~L~~L~l~~c~~l~~ 242 (311)
|++++ .+... .+..+..+++|+.|++++| +++. .+...+ ..+++|+.|++++|. +..
T Consensus 117 L~L~~N~i~~~----------------~~~~~~~l~~L~~L~L~~N-~l~~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~ 177 (361)
T 2xot_A 117 LLLYNNHIVVV----------------DRNAFEDMAQLQKLYLSQN-QISR-FPVELIKDGNKLPKLMLLDLSSNK-LKK 177 (361)
T ss_dssp EECCSSCCCEE----------------CTTTTTTCTTCCEEECCSS-CCCS-CCGGGTC----CTTCCEEECCSSC-CCC
T ss_pred EECCCCcccEE----------------CHHHhCCcccCCEEECCCC-cCCe-eCHHHhcCcccCCcCCEEECCCCC-CCc
Confidence 77765 11111 1223556789999999999 8887 455555 569999999999875 444
Q ss_pred E
Q 039375 243 V 243 (311)
Q Consensus 243 ~ 243 (311)
+
T Consensus 178 l 178 (361)
T 2xot_A 178 L 178 (361)
T ss_dssp C
T ss_pred c
Confidence 3
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.88 E-value=2.7e-09 Score=84.82 Aligned_cols=80 Identities=20% Similarity=0.359 Sum_probs=61.2
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhcc-ccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLI-RLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~-~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
.+.++.+|++|++++ +.++.+|. + ..+. +|++|++++|.+. .+ ..++.+++|+.|++++|.+.
T Consensus 14 ~~~~~~~L~~L~l~~-n~l~~i~~-~-~~~~~~L~~L~Ls~N~l~-~~------------~~l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 14 QYTNAVRDRELDLRG-YKIPVIEN-L-GATLDQFDAIDFSDNEIR-KL------------DGFPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp EEECTTSCEEEECTT-SCCCSCCC-G-GGGTTCCSEEECCSSCCC-EE------------CCCCCCSSCCEEECCSSCCC
T ss_pred hcCCcCCceEEEeeC-CCCchhHH-h-hhcCCCCCEEECCCCCCC-cc------------cccccCCCCCEEECCCCccc
Confidence 356788999999999 68888865 4 6665 9999999999887 45 56788899999999988887
Q ss_pred cccccc-c-cccCcEEEEE
Q 039375 82 ILQEGF-L-ARKLERFKIS 98 (311)
Q Consensus 82 ~lp~~~-~-l~~L~~l~~~ 98 (311)
.+|..+ . +++|+.++++
T Consensus 78 ~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 78 RIGEGLDQALPDLTELILT 96 (176)
T ss_dssp EECSCHHHHCTTCCEEECC
T ss_pred ccCcchhhcCCCCCEEECC
Confidence 777644 2 5666665543
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.87 E-value=3.1e-09 Score=88.30 Aligned_cols=126 Identities=21% Similarity=0.329 Sum_probs=82.0
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF 87 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~ 87 (311)
++|++|+|++ +.+..+++..++.+++|++|++++|.+. .+. + ..+..+++|+.|++++|.+..++...
T Consensus 40 ~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~-~---------~~~~~l~~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 40 TNAQILYLHD-NQITKLEPGVFDSLINLKELYLGSNQLG-ALP-V---------GVFDSLTQLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC-T---------TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCEEEcCC-CccCccCHHHhhCccCCcEEECCCCCCC-CcC-h---------hhcccCCCcCEEECCCCcCCccChhH
Confidence 6788888888 6777674443488888888888888876 552 2 34577888888888888887777654
Q ss_pred --ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc-eeeEEccccCCcceeccccccccccc
Q 039375 88 --LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD-FTDICSMKLQAINNVEYISQSRITLT 164 (311)
Q Consensus 88 --~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-l~~L~l~~~~~~~~~~~~~~~~~~~L 164 (311)
.+++|+.++++.+. +..+|. .+ ..+++++.+.+..+ ++.+... .+ ..+++|
T Consensus 108 ~~~l~~L~~L~Ls~N~---l~~lp~--~~----------~~l~~L~~L~L~~N~l~~~~~~---~~--------~~l~~L 161 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNK---LTELPR--GI----------ERLTHLTHLALDQNQLKSIPHG---AF--------DRLSSL 161 (229)
T ss_dssp TTTCTTCCEEECCSSC---CCSCCT--TG----------GGCTTCSEEECCSSCCCCCCTT---TT--------TTCTTC
T ss_pred hCcchhhCeEeccCCc---ccccCc--cc----------ccCCCCCEEECCCCcCCccCHH---HH--------hCCCCC
Confidence 37888888775332 223332 12 55667777777665 4444332 12 345566
Q ss_pred ceEEEec
Q 039375 165 VSLFIRR 171 (311)
Q Consensus 165 ~~L~l~~ 171 (311)
+.|++.+
T Consensus 162 ~~L~l~~ 168 (229)
T 3e6j_A 162 THAYLFG 168 (229)
T ss_dssp CEEECTT
T ss_pred CEEEeeC
Confidence 6777655
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.85 E-value=8.2e-09 Score=96.97 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=106.1
Q ss_pred CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375 7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG 86 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~ 86 (311)
+++|++|+|++ +.++.+| +.+++|++|++++|.+. .+ | . +.. +|+.|++++|.+..+|.
T Consensus 79 ~~~L~~L~Ls~-N~l~~ip----~~l~~L~~L~Ls~N~l~-~i--p---------~-l~~--~L~~L~Ls~N~l~~lp~- 137 (571)
T 3cvr_A 79 PPQITVLEITQ-NALISLP----ELPASLEYLDACDNRLS-TL--P---------E-LPA--SLKHLDVDNNQLTMLPE- 137 (571)
T ss_dssp CTTCSEEECCS-SCCSCCC----CCCTTCCEEECCSSCCS-CC--C---------C-CCT--TCCEEECCSSCCSCCCC-
T ss_pred cCCCCEEECcC-CCCcccc----cccCCCCEEEccCCCCC-Cc--c---------h-hhc--CCCEEECCCCcCCCCCC-
Confidence 37899999999 7889999 34789999999999998 46 5 4 444 99999999999988988
Q ss_pred cccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccce
Q 039375 87 FLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVS 166 (311)
Q Consensus 87 ~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~ 166 (311)
.+++|+.++++.+. +..+| ...++++. |.++.+. ++.+.. . . ++|+.
T Consensus 138 -~l~~L~~L~Ls~N~---l~~lp---------------~~l~~L~~---------L~Ls~N~-L~~lp~-l-~--~~L~~ 184 (571)
T 3cvr_A 138 -LPALLEYINADNNQ---LTMLP---------------ELPTSLEV---------LSVRNNQ-LTFLPE-L-P--ESLEA 184 (571)
T ss_dssp -CCTTCCEEECCSSC---CSCCC---------------CCCTTCCE---------EECCSSC-CSCCCC-C-C--TTCCE
T ss_pred -cCccccEEeCCCCc---cCcCC---------------CcCCCcCE---------EECCCCC-CCCcch-h-h--CCCCE
Confidence 67899999886332 11122 12233443 4443321 222111 0 2 57888
Q ss_pred EEEec-eEecccccccCccccc-ccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEE
Q 039375 167 LFIRR-GIFNGRMLRETFEEVG-NDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEV 243 (311)
Q Consensus 167 L~l~~-~~~~~~~~~~~~~~l~-~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~ 243 (311)
|++++ .+..++. +. +| ....+.|+.|++++| +++. . +..+..+++|+.|++++|+..+.+
T Consensus 185 L~Ls~N~L~~lp~-------~~~~L-------~~~~~~L~~L~Ls~N-~l~~-l-p~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 185 LDVSTNLLESLPA-------VPVRN-------HHSEETEIFFRCREN-RITH-I-PENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp EECCSSCCSSCCC-------CC---------------CCEEEECCSS-CCCC-C-CGGGGGSCTTEEEECCSSSCCHHH
T ss_pred EECcCCCCCchhh-------HHHhh-------hcccccceEEecCCC-ccee-c-CHHHhcCCCCCEEEeeCCcCCCcC
Confidence 88876 1111111 00 00 011233499999999 8887 3 344566999999999988754433
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.85 E-value=1.4e-09 Score=83.86 Aligned_cols=77 Identities=18% Similarity=0.118 Sum_probs=53.0
Q ss_pred CCCCccEEecCCCCCCc--ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc-
Q 039375 6 QVTKLRLLDLRDCFHLK--VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI- 82 (311)
Q Consensus 6 ~L~~L~~L~L~~c~~l~--~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~- 82 (311)
..++|++|++++ +.++ .+|..+ +.+++|++|++++|.+. .+ ..++.+++|+.|++++|.+..
T Consensus 15 ~~~~l~~L~l~~-n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~-~~------------~~~~~l~~L~~L~Ls~n~i~~~ 79 (149)
T 2je0_A 15 TPSDVKELVLDN-SRSNEGKLEGLT-DEFEELEFLSTINVGLT-SI------------ANLPKLNKLKKLELSDNRVSGG 79 (149)
T ss_dssp CGGGCSEEECTT-CBCBTTBCCSCC-TTCTTCCEEECTTSCCC-CC------------TTCCCCTTCCEEECCSSCCCSC
T ss_pred CCccCeEEEccC-CcCChhHHHHHH-hhcCCCcEEECcCCCCC-Cc------------hhhhcCCCCCEEECCCCcccch
Confidence 456788888888 4565 777765 88888888888888775 33 566777888888888777655
Q ss_pred cccccc-cccCcEEEE
Q 039375 83 LQEGFL-ARKLERFKI 97 (311)
Q Consensus 83 lp~~~~-l~~L~~l~~ 97 (311)
+|..+. +++|+.+++
T Consensus 80 ~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNL 95 (149)
T ss_dssp THHHHHHCTTCCEEEC
T ss_pred HHHHhhhCCCCCEEEC
Confidence 544443 455555544
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.82 E-value=1e-08 Score=82.77 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=53.7
Q ss_pred ccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc--
Q 039375 10 LRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF-- 87 (311)
Q Consensus 10 L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~-- 87 (311)
-+++++++ +.++.+|.++ . .+|++|++++|.+. .+ | ..+..+++|+.|+++.|.+..++...
T Consensus 12 ~~~l~~~~-~~l~~ip~~~-~--~~l~~L~L~~n~i~-~i--p---------~~~~~l~~L~~L~Ls~N~i~~i~~~~f~ 75 (193)
T 2wfh_A 12 DTVVRCSN-KGLKVLPKGI-P--RDVTELYLDGNQFT-LV--P---------KELSNYKHLTLIDLSNNRISTLSNQSFS 75 (193)
T ss_dssp TTEEECTT-SCCSSCCSCC-C--TTCCEEECCSSCCC-SC--C---------GGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCEEEcCC-CCCCcCCCCC-C--CCCCEEECCCCcCc-hh--H---------HHhhcccCCCEEECCCCcCCEeCHhHcc
Confidence 36788888 7888898865 3 58999999999887 66 6 77888899999999888877766532
Q ss_pred ccccCcEEEE
Q 039375 88 LARKLERFKI 97 (311)
Q Consensus 88 ~l~~L~~l~~ 97 (311)
.+++|+.+++
T Consensus 76 ~l~~L~~L~L 85 (193)
T 2wfh_A 76 NMTQLLTLIL 85 (193)
T ss_dssp TCTTCCEEEC
T ss_pred CCCCCCEEEC
Confidence 2455555444
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.82 E-value=1.1e-08 Score=82.60 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=52.2
Q ss_pred ccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeecccccccccccc-ccCCCCCccEEEEeecCccccc-ccc
Q 039375 10 LRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLD-ELMLLPWLTTLEIDVKNDSILQ-EGF 87 (311)
Q Consensus 10 L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~-~l~~L~~L~~L~l~~~~~~~lp-~~~ 87 (311)
-+++++++ +.++.+|..+ .. +|++|++++|.+. .+. + . .++.+++|++|++++|.+..++ ..+
T Consensus 10 ~~~l~~s~-~~l~~ip~~~-~~--~l~~L~l~~n~i~-~~~-~---------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 74 (192)
T 1w8a_A 10 GTTVDCTG-RGLKEIPRDI-PL--HTTELLLNDNELG-RIS-S---------DGLFGRLPHLVKLELKRNQLTGIEPNAF 74 (192)
T ss_dssp TTEEECTT-SCCSSCCSCC-CT--TCSEEECCSCCCC-SBC-C---------SCSGGGCTTCCEEECCSSCCCCBCTTTT
T ss_pred CCEEEcCC-CCcCcCccCC-CC--CCCEEECCCCcCC-ccC-C---------ccccccCCCCCEEECCCCCCCCcCHhHc
Confidence 47899999 7889999876 44 8999999999887 441 1 2 3778899999999888876663 333
Q ss_pred c-cccCcEEEE
Q 039375 88 L-ARKLERFKI 97 (311)
Q Consensus 88 ~-l~~L~~l~~ 97 (311)
. +++|+.+++
T Consensus 75 ~~l~~L~~L~L 85 (192)
T 1w8a_A 75 EGASHIQELQL 85 (192)
T ss_dssp TTCTTCCEEEC
T ss_pred CCcccCCEEEC
Confidence 2 444554443
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=3.8e-08 Score=86.24 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=47.4
Q ss_pred CCCccEEecCCCCCCc--------------------ccChhHHHh--------ccccceEEeccccceeeeecccccccc
Q 039375 7 VTKLRLLDLRDCFHLK--------------------VIAPNVISS--------LIRLEELCMGNCSVEWEVERANTERSN 58 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~--------------------~lp~~i~~~--------L~~Lq~L~l~~~~~~~~~~~p~~~~~~ 58 (311)
+++|++|||++ +.+. .+|+..+.. +.+|++|++.. .+. .+. +
T Consensus 48 l~~L~~LdLs~-n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~-~------ 117 (329)
T 3sb4_A 48 FPSLKVLDISN-AEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIE-D------ 117 (329)
T ss_dssp CTTCCEEEEEE-EEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EEC-T------
T ss_pred hccCeEEecCc-ceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chh-H------
Confidence 77899999998 5666 455555566 77788888877 555 452 2
Q ss_pred ccccccCCCCCccEEEEeecCccccccccc
Q 039375 59 ASLDELMLLPWLTTLEIDVKNDSILQEGFL 88 (311)
Q Consensus 59 ~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~ 88 (311)
..+..+++|+.+++..+.+..++....
T Consensus 118 ---~aF~~~~~L~~l~l~~n~i~~i~~~aF 144 (329)
T 3sb4_A 118 ---AAFKGCDNLKICQIRKKTAPNLLPEAL 144 (329)
T ss_dssp ---TTTTTCTTCCEEEBCCSSCCEECTTSS
T ss_pred ---HHhhcCcccceEEcCCCCccccchhhh
Confidence 456677778888887777666666554
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.72 E-value=1.1e-08 Score=82.72 Aligned_cols=104 Identities=13% Similarity=0.203 Sum_probs=74.3
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG- 86 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~- 86 (311)
.+|++|++++ +.++.+|..+ +.+.+|++|++++|.+. .+. + ..+..+++|+.|++++|.+..++..
T Consensus 31 ~~l~~L~L~~-n~i~~ip~~~-~~l~~L~~L~Ls~N~i~-~i~-~---------~~f~~l~~L~~L~Ls~N~l~~i~~~~ 97 (193)
T 2wfh_A 31 RDVTELYLDG-NQFTLVPKEL-SNYKHLTLIDLSNNRIS-TLS-N---------QSFSNMTQLLTLILSYNRLRCIPPRT 97 (193)
T ss_dssp TTCCEEECCS-SCCCSCCGGG-GGCTTCCEEECCSSCCC-CCC-T---------TTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred CCCCEEECCC-CcCchhHHHh-hcccCCCEEECCCCcCC-EeC-H---------hHccCCCCCCEEECCCCccCEeCHHH
Confidence 5788899998 7888888776 88899999999998887 442 3 5678888899999988888877764
Q ss_pred c-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc
Q 039375 87 F-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD 138 (311)
Q Consensus 87 ~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 138 (311)
+ .+++|+.++++.+. +..+|.. .+ ..+++++.+.+.++
T Consensus 98 f~~l~~L~~L~L~~N~---l~~~~~~-~~----------~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGND---ISVVPEG-AF----------NDLSALSHLAIGAN 136 (193)
T ss_dssp TTTCTTCCEEECCSSC---CCBCCTT-TT----------TTCTTCCEEECCSS
T ss_pred hCCCCCCCEEECCCCC---CCeeChh-hh----------hcCccccEEEeCCC
Confidence 3 37888888876332 1122210 11 45667777777765
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.72 E-value=2.8e-09 Score=94.77 Aligned_cols=226 Identities=9% Similarity=0.010 Sum_probs=118.2
Q ss_pred cCCCC-CccEEecCCCCCCcccChhHHHhc-----cccceEEeccccceeeeeccccccccccccccCCC-CCccEEEEe
Q 039375 4 LGQVT-KLRLLDLRDCFHLKVIAPNVISSL-----IRLEELCMGNCSVEWEVERANTERSNASLDELMLL-PWLTTLEID 76 (311)
Q Consensus 4 i~~L~-~L~~L~L~~c~~l~~lp~~i~~~L-----~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L-~~L~~L~l~ 76 (311)
+..++ +|++|+|++ +.++......+..+ ++|++|++++|.+.... + ......+..+ ++|+.|+++
T Consensus 46 l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~--~-----~~l~~~l~~~~~~L~~L~Ls 117 (362)
T 3goz_A 46 FANTPASVTSLNLSG-NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS--S-----DELVKTLAAIPFTITVLDLG 117 (362)
T ss_dssp HHTCCTTCCEEECCS-SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC--H-----HHHHHHHHTSCTTCCEEECC
T ss_pred HHhCCCceeEEECcC-CCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH--H-----HHHHHHHHhCCCCccEEECc
Confidence 45677 899999999 68887654444776 89999999999986332 2 0111234555 899999999
Q ss_pred ecCcccccccc-c------cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCC
Q 039375 77 VKNDSILQEGF-L------ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQA 149 (311)
Q Consensus 77 ~~~~~~lp~~~-~------l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~ 149 (311)
+|.+...+... . ..+|+.++++.+. +...-.. .+ ...+ .... ..++.|.+..+ .
T Consensus 118 ~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~--~l-----~~~l-~~~~--------~~L~~L~Ls~n-~ 178 (362)
T 3goz_A 118 WNDFSSKSSSEFKQAFSNLPASITSLNLRGND--LGIKSSD--EL-----IQIL-AAIP--------ANVNSLNLRGN-N 178 (362)
T ss_dssp SSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC--GGGSCHH--HH-----HHHH-HTSC--------TTCCEEECTTS-C
T ss_pred CCcCCcHHHHHHHHHHHhCCCceeEEEccCCc--CCHHHHH--HH-----HHHH-hcCC--------ccccEeeecCC-C
Confidence 99877665432 1 2589998875322 1110000 00 0000 0111 12345555543 2
Q ss_pred cceeccccc----ccc-cccceEEEeceEecccccccCcccccccEEeCCCCccc-ccCccEEEEecCCCceeecCc---
Q 039375 150 INNVEYISQ----SRI-TLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVS-FRNLTKLVAVGCKELIHLVTS--- 220 (311)
Q Consensus 150 ~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~-l~~L~~L~l~~~~~l~~l~~~--- 220 (311)
++....... ... ++|++|++++.- +..... ..+. ..... .++|+.|++++| .+++ ...
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--i~~~~~--~~l~-------~~l~~~~~~L~~L~Ls~N-~l~~-~~~~~l 245 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANL--LGLKSY--AELA-------YIFSSIPNHVVSLNLCLN-CLHG-PSLENL 245 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSC--GGGSCH--HHHH-------HHHHHSCTTCCEEECCSS-CCCC-CCHHHH
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCC--CChhHH--HHHH-------HHHhcCCCCceEEECcCC-CCCc-HHHHHH
Confidence 322221110 233 478888887611 100000 0000 00112 347888888888 7776 322
Q ss_pred -cccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeeccccc
Q 039375 221 -STAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLD 270 (311)
Q Consensus 221 -~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~ 270 (311)
..+..+++|++|++++|.. ..+..............+++|+.|++++++
T Consensus 246 ~~~~~~l~~L~~L~L~~n~l-~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 246 KLLKDSLKHLQTVYLDYDIV-KNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHTTTTTTTCSEEEEEHHHH-TTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHhcCCCccEEEeccCCc-cccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 2346678888888887751 111000000001112345667777776653
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.71 E-value=1.1e-08 Score=99.22 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=78.0
Q ss_pred CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
..+..+.+|++|+|++ +.+..+|.++ .++.+|++|++++|.+. .+ | ..++.|++|+.|++++|.+.
T Consensus 218 ~~~~~l~~L~~L~Ls~-n~l~~l~~~~-~~l~~L~~L~Ls~N~l~-~l--p---------~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSN-LQIFNISANI-FKYDFLTRLYLNGNSLT-EL--P---------AEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----CCCCCCEEECTT-SCCSCCCGGG-GGCCSCSCCBCTTSCCS-CC--C---------GGGGGGTTCCEEECTTSCCS
T ss_pred hhhccCCCCcEEECCC-CCCCCCChhh-cCCCCCCEEEeeCCcCc-cc--C---------hhhhCCCCCCEEeCcCCcCC
Confidence 3467788888888888 6677888887 78888888888888887 67 6 77888888888888888888
Q ss_pred ccccccc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc
Q 039375 82 ILQEGFL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD 138 (311)
Q Consensus 82 ~lp~~~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 138 (311)
.+|..+. +.+|+.|+++.+. +..+|.. + +.+++|+.|.+.++
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~---l~~lp~~--~----------~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNM---VTTLPWE--F----------GNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSC---CCCCCSS--T----------TSCTTCCCEECTTS
T ss_pred ccChhhcCCCCCCEEECCCCC---CCccChh--h----------hcCCCccEEeCCCC
Confidence 8888775 7888888876332 2345432 2 55666666666654
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.68 E-value=4.8e-08 Score=78.70 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=65.2
Q ss_pred CccEEecCCCCCCcccChh-HHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-
Q 039375 9 KLRLLDLRDCFHLKVIAPN-VISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG- 86 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~-i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~- 86 (311)
+|++|++++ +.++.+++. +++++++|++|++++|.+.... | ..++.+++|+.|++++|.+..++..
T Consensus 30 ~l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~---------~~~~~l~~L~~L~Ls~N~l~~~~~~~ 97 (192)
T 1w8a_A 30 HTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQLTGIE--P---------NAFEGASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp TCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC--T---------TTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred CCCEEECCC-CcCCccCCccccccCCCCCEEECCCCCCCCcC--H---------hHcCCcccCCEEECCCCcCCccCHHH
Confidence 899999999 788888764 3499999999999999988444 5 7888999999999999998887765
Q ss_pred c-ccccCcEEEEE
Q 039375 87 F-LARKLERFKIS 98 (311)
Q Consensus 87 ~-~l~~L~~l~~~ 98 (311)
+ .+++|+.++++
T Consensus 98 ~~~l~~L~~L~L~ 110 (192)
T 1w8a_A 98 FLGLHQLKTLNLY 110 (192)
T ss_dssp STTCTTCCEEECC
T ss_pred hcCCCCCCEEECC
Confidence 3 38899998876
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.66 E-value=9.7e-08 Score=75.72 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=53.3
Q ss_pred CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc-
Q 039375 9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF- 87 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~- 87 (311)
+.+.+++++ +.++.+|.++ ..+|++|++++|.+. .+. + ..++.+++|+.|++++|.+..+|...
T Consensus 8 ~~~~l~~~~-~~l~~~p~~~---~~~l~~L~l~~n~l~-~~~-~---------~~~~~l~~L~~L~l~~n~l~~~~~~~~ 72 (177)
T 2o6r_A 8 SGTEIRCNS-KGLTSVPTGI---PSSATRLELESNKLQ-SLP-H---------GVFDKLTQLTKLSLSQNQIQSLPDGVF 72 (177)
T ss_dssp ETTEEECCS-SCCSSCCTTC---CTTCSEEECCSSCCC-CCC-T---------TTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCCEEEecC-CCCccCCCCC---CCCCcEEEeCCCccc-EeC-H---------HHhcCcccccEEECCCCcceEeChhHc
Confidence 467888988 7888998754 368999999999887 442 2 45678899999999888777666542
Q ss_pred -ccccCcEEEE
Q 039375 88 -LARKLERFKI 97 (311)
Q Consensus 88 -~l~~L~~l~~ 97 (311)
.+++|+.+++
T Consensus 73 ~~l~~L~~L~l 83 (177)
T 2o6r_A 73 DKLTKLTILYL 83 (177)
T ss_dssp TTCTTCCEEEC
T ss_pred cCCCccCEEEC
Confidence 1444444443
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.63 E-value=1.1e-08 Score=78.75 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=69.2
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
|..++.+++|++|++++ +.++.+ ..+ +++++|++|++++|.+...+ | ..++.+++|+.|++++|.+
T Consensus 35 ~~~~~~l~~L~~L~l~~-n~l~~~-~~~-~~l~~L~~L~Ls~n~i~~~~--~---------~~~~~l~~L~~L~ls~N~i 100 (149)
T 2je0_A 35 EGLTDEFEELEFLSTIN-VGLTSI-ANL-PKLNKLKKLELSDNRVSGGL--E---------VLAEKCPNLTHLNLSGNKI 100 (149)
T ss_dssp CSCCTTCTTCCEEECTT-SCCCCC-TTC-CCCTTCCEEECCSSCCCSCT--H---------HHHHHCTTCCEEECTTSCC
T ss_pred HHHHhhcCCCcEEECcC-CCCCCc-hhh-hcCCCCCEEECCCCcccchH--H---------HHhhhCCCCCEEECCCCcC
Confidence 44578899999999999 588877 444 99999999999999987445 5 5666799999999999998
Q ss_pred cccc--cccc-cccCcEEEEE
Q 039375 81 SILQ--EGFL-ARKLERFKIS 98 (311)
Q Consensus 81 ~~lp--~~~~-l~~L~~l~~~ 98 (311)
..+| ..+. +++|+.++++
T Consensus 101 ~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 101 KDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp CSHHHHGGGGGCTTCCEEECT
T ss_pred CChHHHHHHhhCCCCCEEeCc
Confidence 8865 5553 8899999875
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.63 E-value=3.7e-08 Score=78.18 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=57.9
Q ss_pred CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375 7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG 86 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~ 86 (311)
..+|++|++++ +.++.+|+..++++++|++|++++|.+. .+. + ..++.+++|+.|++++|.+..+|..
T Consensus 27 ~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~---------~~~~~l~~L~~L~l~~N~l~~~~~~ 94 (177)
T 2o6r_A 27 PSSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLP-D---------GVFDKLTKLTILYLHENKLQSLPNG 94 (177)
T ss_dssp CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCC-CCC-T---------TTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCcEEEeCC-CcccEeCHHHhcCcccccEEECCCCcce-EeC-h---------hHccCCCccCEEECCCCCccccCHH
Confidence 35788888888 6677777665578888888888888776 441 2 3457788888888888877777765
Q ss_pred c--ccccCcEEEEE
Q 039375 87 F--LARKLERFKIS 98 (311)
Q Consensus 87 ~--~l~~L~~l~~~ 98 (311)
. .+++|+.++++
T Consensus 95 ~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 95 VFDKLTQLKELALD 108 (177)
T ss_dssp TTTTCTTCCEEECC
T ss_pred HhhCCcccCEEECc
Confidence 3 37788887775
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.62 E-value=3.1e-08 Score=78.63 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=55.9
Q ss_pred cCCCC-CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeecccccccccccccc-CCCCCccEEEEeecCcc
Q 039375 4 LGQVT-KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDEL-MLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 4 i~~L~-~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l-~~L~~L~~L~l~~~~~~ 81 (311)
+..+. +|++|++++ +.++.+ +.+ +.+++|++|++++|.+. .+ | ..+ +.+++|+.|++++|.+.
T Consensus 37 ~~~~~~~L~~L~Ls~-N~l~~~-~~l-~~l~~L~~L~Ls~N~l~-~~--~---------~~~~~~l~~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 37 LGATLDQFDAIDFSD-NEIRKL-DGF-PLLRRLKTLLVNNNRIC-RI--G---------EGLDQALPDLTELILTNNSLV 101 (176)
T ss_dssp GGGGTTCCSEEECCS-SCCCEE-CCC-CCCSSCCEEECCSSCCC-EE--C---------SCHHHHCTTCCEEECCSCCCC
T ss_pred hhhcCCCCCEEECCC-CCCCcc-ccc-ccCCCCCEEECCCCccc-cc--C---------cchhhcCCCCCEEECCCCcCC
Confidence 33444 788888888 577776 344 77888888888888776 55 3 343 67778888888887777
Q ss_pred cccc--ccc-cccCcEEEEE
Q 039375 82 ILQE--GFL-ARKLERFKIS 98 (311)
Q Consensus 82 ~lp~--~~~-l~~L~~l~~~ 98 (311)
.+|. .+. +++|+.++++
T Consensus 102 ~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 102 ELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CGGGGGGGGGCTTCCEEECC
T ss_pred cchhhHhhhcCCCCCEEEec
Confidence 7776 443 6777777765
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.59 E-value=1.1e-08 Score=82.97 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=53.9
Q ss_pred CccEEecCCC-CCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375 9 KLRLLDLRDC-FHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF 87 (311)
Q Consensus 9 ~L~~L~L~~c-~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~ 87 (311)
.|+...+.++ ..++.+|..+ +++++|++|++++|.+. .+ ..++.+++|+.|++++|.+..+|..+
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~-~~l~~L~~L~ls~n~l~-~l------------~~~~~l~~L~~L~l~~n~l~~l~~~~ 89 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIE-KI------------SSLSGMENLRILSLGRNLIKKIENLD 89 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHH-HHTTTCSEEECSEEEES-CC------------CCHHHHTTCCEEEEEEEEECSCSSHH
T ss_pred chheeEeccccCcHhhhhHHH-hcCCCCCEEECCCCCCc-cc------------cccccCCCCCEEECCCCCcccccchh
Confidence 3455555542 2455666666 88999999999988776 34 46667788889999888877777655
Q ss_pred c-cccCcEEEEE
Q 039375 88 L-ARKLERFKIS 98 (311)
Q Consensus 88 ~-l~~L~~l~~~ 98 (311)
. +++|+.++++
T Consensus 90 ~~~~~L~~L~L~ 101 (198)
T 1ds9_A 90 AVADTLEELWIS 101 (198)
T ss_dssp HHHHHCSEEEEE
T ss_pred hcCCcCCEEECc
Confidence 4 5777777765
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.59 E-value=5.3e-08 Score=77.23 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=57.5
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG- 86 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~- 86 (311)
.+|++|+|++ +.++.++++.++++++|++|++++|.+. .+. + ..++.+++|+.|++++|.+..+|..
T Consensus 33 ~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~-~---------~~~~~l~~L~~L~L~~N~l~~l~~~~ 100 (174)
T 2r9u_A 33 TDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNSNKLT-AIP-T---------GVFDKLTQLTQLDLNDNHLKSIPRGA 100 (174)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC-T---------TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCCCCCC-ccC-h---------hHhCCcchhhEEECCCCccceeCHHH
Confidence 6788888888 6777775544488888888888888876 451 1 2346788888888888888777775
Q ss_pred cc-cccCcEEEEE
Q 039375 87 FL-ARKLERFKIS 98 (311)
Q Consensus 87 ~~-l~~L~~l~~~ 98 (311)
+. +++|+.+++.
T Consensus 101 ~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 101 FDNLKSLTHIYLY 113 (174)
T ss_dssp TTTCTTCSEEECC
T ss_pred hccccCCCEEEeC
Confidence 33 7788887775
No 132
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.58 E-value=5.6e-08 Score=85.67 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=72.6
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
|. ++.+++|++|+|++++.++.+|++.++.|.+|++|++++|.+.+.. | ..++.|++|+.|++++|.+
T Consensus 25 p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~---------~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 25 HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA--P---------DAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC--T---------TGGGSCSCCCEEECCSSCC
T ss_pred CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC--H---------HHhcCCcCCCEEeCCCCcc
Confidence 55 8889999999999668999998765599999999999999998444 5 6778999999999999999
Q ss_pred cccccccc-cccCcEEEEEe
Q 039375 81 SILQEGFL-ARKLERFKISI 99 (311)
Q Consensus 81 ~~lp~~~~-l~~L~~l~~~~ 99 (311)
..+|..+. ...|+.+.+..
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSG 112 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCS
T ss_pred ceeCHHHcccCCceEEEeeC
Confidence 99987653 33488888763
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.56 E-value=6.7e-08 Score=76.31 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=55.1
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG- 86 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~- 86 (311)
.+|++|+|++ +.++.++++.++++++|++|++++|.+. .+. + ..+..+++|+.|++++|.+..+|..
T Consensus 30 ~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~-~---------~~f~~l~~L~~L~L~~N~l~~~~~~~ 97 (170)
T 3g39_A 30 TTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDNNQLT-VLP-A---------GVFDKLTQLTQLSLNDNQLKSIPRGA 97 (170)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCC-CCC-T---------TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEEcCC-CcCCccChhhhcCcccCCEEECCCCCcC-ccC-h---------hhccCCCCCCEEECCCCccCEeCHHH
Confidence 6777888887 6777775544477888888888888776 441 2 3356777888888877777777764
Q ss_pred c-ccccCcEEEEE
Q 039375 87 F-LARKLERFKIS 98 (311)
Q Consensus 87 ~-~l~~L~~l~~~ 98 (311)
+ .+++|+.++++
T Consensus 98 ~~~l~~L~~L~L~ 110 (170)
T 3g39_A 98 FDNLKSLTHIWLL 110 (170)
T ss_dssp TTTCTTCCEEECC
T ss_pred hcCCCCCCEEEeC
Confidence 3 26777777765
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.56 E-value=3.3e-08 Score=95.77 Aligned_cols=84 Identities=15% Similarity=0.050 Sum_probs=76.1
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
|..++.+++|++|+|++ +.++.+|.++ ++|++|++|++++|.+. .+ | .+++.|++|++|++++|.+
T Consensus 240 ~~~~~~l~~L~~L~Ls~-N~l~~lp~~~-~~l~~L~~L~Ls~N~l~-~l--p---------~~~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 240 SANIFKYDFLTRLYLNG-NSLTELPAEI-KNLSNLRVLDLSHNRLT-SL--P---------AELGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp CGGGGGCCSCSCCBCTT-SCCSCCCGGG-GGGTTCCEEECTTSCCS-SC--C---------SSGGGGTTCSEEECCSSCC
T ss_pred ChhhcCCCCCCEEEeeC-CcCcccChhh-hCCCCCCEEeCcCCcCC-cc--C---------hhhcCCCCCCEEECCCCCC
Confidence 45677899999999999 6888999988 99999999999999998 77 7 8899999999999999999
Q ss_pred cccccccc-cccCcEEEEE
Q 039375 81 SILQEGFL-ARKLERFKIS 98 (311)
Q Consensus 81 ~~lp~~~~-l~~L~~l~~~ 98 (311)
..+|..+. +++|+.++++
T Consensus 306 ~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 306 TTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CCCCSSTTSCTTCCCEECT
T ss_pred CccChhhhcCCCccEEeCC
Confidence 99998875 8999999885
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.56 E-value=7.7e-08 Score=75.60 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=64.7
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
|..++.+++|++|++++ +.++.+ ..+ +.+++|++|++++|.+...+ | ..++.+++|+.|++++|.+
T Consensus 42 ~~~~~~l~~L~~L~l~~-n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~~~--~---------~~~~~l~~L~~L~Ls~N~l 107 (168)
T 2ell_A 42 EGLTAEFVNLEFLSLIN-VGLISV-SNL-PKLPKLKKLELSENRIFGGL--D---------MLAEKLPNLTHLNLSGNKL 107 (168)
T ss_dssp SSCCGGGGGCCEEEEES-SCCCCC-SSC-CCCSSCCEEEEESCCCCSCC--C---------HHHHHCTTCCEEECBSSSC
T ss_pred HHHHHhCCCCCEEeCcC-CCCCCh-hhh-ccCCCCCEEECcCCcCchHH--H---------HHHhhCCCCCEEeccCCcc
Confidence 34567788999999999 567777 444 88999999999999887445 4 5556688999999998888
Q ss_pred cccc--cccc-cccCcEEEEE
Q 039375 81 SILQ--EGFL-ARKLERFKIS 98 (311)
Q Consensus 81 ~~lp--~~~~-l~~L~~l~~~ 98 (311)
..+| ..+. +++|+.++++
T Consensus 108 ~~~~~~~~l~~l~~L~~L~l~ 128 (168)
T 2ell_A 108 KDISTLEPLKKLECLKSLDLF 128 (168)
T ss_dssp CSSGGGGGGSSCSCCCEEECC
T ss_pred CcchhHHHHhcCCCCCEEEee
Confidence 8776 3443 7888888876
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.52 E-value=9.8e-08 Score=75.66 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=63.8
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
|..++.+++|++|+|++ +.++.+|+++++++++|++|++++|.+. .+. + ..++.+++|+.|++++|..
T Consensus 50 ~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~-~---------~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 50 PGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIP-R---------GAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC-T---------TTTTTCTTCSEEECCSSCB
T ss_pred HHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCCCccc-eeC-H---------HHhccccCCCEEEeCCCCc
Confidence 45688999999999999 7999999887699999999999999998 552 2 3488899999999999988
Q ss_pred ccccccc
Q 039375 81 SILQEGF 87 (311)
Q Consensus 81 ~~lp~~~ 87 (311)
...+..+
T Consensus 118 ~c~~~~~ 124 (174)
T 2r9u_A 118 DCECRDI 124 (174)
T ss_dssp CTTBGGG
T ss_pred ccccccH
Confidence 7776643
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.51 E-value=1e-07 Score=89.72 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=65.4
Q ss_pred CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc-
Q 039375 9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF- 87 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~- 87 (311)
.|++|+|++ +.++.+|. + +.+++|++|++++|.+. .+ | ..++.+++|+.|++++|.+..+| .+
T Consensus 442 ~L~~L~Ls~-n~l~~lp~-~-~~l~~L~~L~Ls~N~l~-~l--p---------~~~~~l~~L~~L~Ls~N~l~~lp-~l~ 505 (567)
T 1dce_A 442 DVRVLHLAH-KDLTVLCH-L-EQLLLVTHLDLSHNRLR-AL--P---------PALAALRCLEVLQASDNALENVD-GVA 505 (567)
T ss_dssp TCSEEECTT-SCCSSCCC-G-GGGTTCCEEECCSSCCC-CC--C---------GGGGGCTTCCEEECCSSCCCCCG-GGT
T ss_pred CceEEEecC-CCCCCCcC-c-cccccCcEeecCccccc-cc--c---------hhhhcCCCCCEEECCCCCCCCCc-ccC
Confidence 588999999 68888987 5 99999999999999998 77 7 88999999999999999988888 45
Q ss_pred ccccCcEEEEEe
Q 039375 88 LARKLERFKISI 99 (311)
Q Consensus 88 ~l~~L~~l~~~~ 99 (311)
.+++|+.++++.
T Consensus 506 ~l~~L~~L~Ls~ 517 (567)
T 1dce_A 506 NLPRLQELLLCN 517 (567)
T ss_dssp TCSSCCEEECCS
T ss_pred CCCCCcEEECCC
Confidence 488999998863
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.51 E-value=3.4e-09 Score=85.94 Aligned_cols=83 Identities=17% Similarity=0.142 Sum_probs=70.4
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI 82 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 82 (311)
.++++++|++|++++ +.++.+| .+ +++++|++|++++|.+. .+ | ..++.+++|+.|++++|.+..
T Consensus 43 ~~~~l~~L~~L~ls~-n~l~~l~-~~-~~l~~L~~L~l~~n~l~-~l--~---------~~~~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 43 TLSTLKACKHLALST-NNIEKIS-SL-SGMENLRILSLGRNLIK-KI--E---------NLDAVADTLEELWISYNQIAS 107 (198)
T ss_dssp HHHHTTTCSEEECSE-EEESCCC-CH-HHHTTCCEEEEEEEEEC-SC--S---------SHHHHHHHCSEEEEEEEECCC
T ss_pred HHhcCCCCCEEECCC-CCCcccc-cc-ccCCCCCEEECCCCCcc-cc--c---------chhhcCCcCCEEECcCCcCCc
Confidence 577899999999999 6888899 55 99999999999999987 66 5 566677899999999999888
Q ss_pred cccccccccCcEEEEEec
Q 039375 83 LQEGFLARKLERFKISIG 100 (311)
Q Consensus 83 lp~~~~l~~L~~l~~~~~ 100 (311)
+|....+++|+.++++.+
T Consensus 108 l~~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 108 LSGIEKLVNLRVLYMSNN 125 (198)
T ss_dssp HHHHHHHHHSSEEEESEE
T ss_pred CCccccCCCCCEEECCCC
Confidence 884334899999988643
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.46 E-value=2.1e-07 Score=87.56 Aligned_cols=80 Identities=24% Similarity=0.297 Sum_probs=72.0
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL 83 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l 83 (311)
++.+++|++|+|++ +.++.+|..+ +++++|++|++++|.+. .+ ..++.+++|+.|++++|.+..+
T Consensus 459 ~~~l~~L~~L~Ls~-N~l~~lp~~~-~~l~~L~~L~Ls~N~l~-~l------------p~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 459 LEQLLLVTHLDLSH-NRLRALPPAL-AALRCLEVLQASDNALE-NV------------DGVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp GGGGTTCCEEECCS-SCCCCCCGGG-GGCTTCCEEECCSSCCC-CC------------GGGTTCSSCCEEECCSSCCCSS
T ss_pred ccccccCcEeecCc-ccccccchhh-hcCCCCCEEECCCCCCC-CC------------cccCCCCCCcEEECCCCCCCCC
Confidence 88899999999999 7889999987 99999999999999987 45 5788999999999999998888
Q ss_pred --ccccc-cccCcEEEEE
Q 039375 84 --QEGFL-ARKLERFKIS 98 (311)
Q Consensus 84 --p~~~~-l~~L~~l~~~ 98 (311)
|..+. +++|+.++++
T Consensus 524 ~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 524 AAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp STTGGGGGCTTCCEEECT
T ss_pred CCcHHHhcCCCCCEEEec
Confidence 77775 8999999875
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.42 E-value=2.7e-07 Score=72.80 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=61.8
Q ss_pred CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375 1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND 80 (311)
Q Consensus 1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 80 (311)
|..++.+++|++|+|++ +.++.+|++++.++++|++|++++|.+. .+. + ..++.+++|+.|++++|..
T Consensus 47 ~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~-~---------~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 47 PGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIP-R---------GAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC-T---------TTTTTCTTCCEEECCSSCB
T ss_pred hhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCCccC-EeC-H---------HHhcCCCCCCEEEeCCCCC
Confidence 45688999999999999 7899999887799999999999999998 552 2 4588999999999999886
Q ss_pred ccccc
Q 039375 81 SILQE 85 (311)
Q Consensus 81 ~~lp~ 85 (311)
...+.
T Consensus 115 ~c~c~ 119 (170)
T 3g39_A 115 DCACS 119 (170)
T ss_dssp CTTBG
T ss_pred CCCch
Confidence 65544
No 141
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=1.4e-07 Score=74.33 Aligned_cols=88 Identities=11% Similarity=0.173 Sum_probs=55.8
Q ss_pred CccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCccccccccc----ccccceeecccccccceecc
Q 039375 202 NLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIV----FSKLKALILCDLDSLTSFCS 277 (311)
Q Consensus 202 ~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~----~~~L~~L~i~~~~~l~~~~~ 277 (311)
+|+.|++++| .+++ .....+..+++|+.|++++|..+++..... ... .++|++|++++|+++++-.-
T Consensus 62 ~L~~LDLs~~-~Itd-~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~-------L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 62 KIQAIDATDS-CIMS-IGFDHMEGLQYVEKIRLCKCHYIEDGCLER-------LSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CEEEEEEESC-CCCG-GGGGGGTTCSCCCEEEEESCTTCCHHHHHH-------HHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred eEeEEeCcCC-CccH-HHHHHhcCCCCCCEEEeCCCCccCHHHHHH-------HHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 5778888887 4766 455556677788888888887665531100 011 24677888888877765421
Q ss_pred CCceecCCCccEEEEecCCCCe
Q 039375 278 ANYTFKFPSLEYLEVIGCPKMK 299 (311)
Q Consensus 278 ~~~~~~~~~L~~L~i~~c~~l~ 299 (311)
. ....+++|++|++++|++++
T Consensus 133 ~-~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 133 I-ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp H-HGGGCTTCCEEEEESCTTCC
T ss_pred H-HHhcCCCCCEEECCCCCCCC
Confidence 1 12357888888888887765
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.31 E-value=5e-05 Score=68.21 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=42.7
Q ss_pred CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccc
Q 039375 9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFL 88 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~ 88 (311)
+|+.+.+.. .++.|+...+... +|+.+.+.. .+. .+. + ..+..+.+|+.+++..+.+..++....
T Consensus 136 ~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~-~---------~aF~~c~~L~~l~l~~n~l~~I~~~aF 200 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS-TLE-QLK-E---------DIFYYCYNLKKADLSKTKITKLPASTF 200 (401)
T ss_dssp CCSEEECCT--TCCEECTTTTTTC-CCCEEECCT-TCC-EEC-S---------STTTTCTTCCEEECTTSCCSEECTTTT
T ss_pred CccEEEeCC--CccEECHHhcCCC-CceEEEeCC-Ccc-Eeh-H---------HHhhCcccCCeeecCCCcceEechhhE
Confidence 566666655 2566655444443 566666664 333 332 2 445667777777777666666666543
Q ss_pred -cccCcEEEE
Q 039375 89 -ARKLERFKI 97 (311)
Q Consensus 89 -l~~L~~l~~ 97 (311)
..+|+.+.+
T Consensus 201 ~~~~L~~l~l 210 (401)
T 4fdw_A 201 VYAGIEEVLL 210 (401)
T ss_dssp TTCCCSEEEC
T ss_pred eecccCEEEe
Confidence 456665554
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=4.4e-06 Score=72.94 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=34.5
Q ss_pred CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeee
Q 039375 7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEV 49 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~ 49 (311)
+.+|+.|+|.+ .++.|+++.+..+.+|++|++..+.+. .+
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i 139 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAP-NL 139 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCC-EE
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCcc-cc
Confidence 89999999998 788998877799999999999999875 44
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.12 E-value=8.9e-05 Score=66.55 Aligned_cols=76 Identities=5% Similarity=0.133 Sum_probs=56.0
Q ss_pred CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375 8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF 87 (311)
Q Consensus 8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~ 87 (311)
.+|+.+.+.. .++.++.+.+..+.+|+.+++..|.+. .+ + ...-...+|+.+.+. +.+..++...
T Consensus 157 ~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I--~---------~~aF~~~~L~~l~lp-~~l~~I~~~a 221 (401)
T 4fdw_A 157 STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKIT-KL--P---------ASTFVYAGIEEVLLP-VTLKEIGSQA 221 (401)
T ss_dssp CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCS-EE--C---------TTTTTTCCCSEEECC-TTCCEECTTT
T ss_pred CCceEEEeCC--CccEehHHHhhCcccCCeeecCCCcce-Ee--c---------hhhEeecccCEEEeC-CchheehhhH
Confidence 4789999886 678887766799999999999998887 66 3 222235789998887 3467777655
Q ss_pred c--cccCcEEEEE
Q 039375 88 L--ARKLERFKIS 98 (311)
Q Consensus 88 ~--l~~L~~l~~~ 98 (311)
. +.+|+.+.+.
T Consensus 222 F~~~~~L~~l~l~ 234 (401)
T 4fdw_A 222 FLKTSQLKTIEIP 234 (401)
T ss_dssp TTTCTTCCCEECC
T ss_pred hhCCCCCCEEecC
Confidence 3 6677777664
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.80 E-value=1.6e-05 Score=69.77 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=55.8
Q ss_pred CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccc-cCCCCCccEEEEeecCc
Q 039375 2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDE-LMLLPWLTTLEIDVKND 80 (311)
Q Consensus 2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~-l~~L~~L~~L~l~~~~~ 80 (311)
..|+.|++|++|+|++ +.++.+|++.+++|++|++|+|++|.+. .+ | .+ +..++ |+.|++.+|..
T Consensus 50 ~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~--~---------~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 50 RDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSFNALE-SL--S---------WKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp GGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCSSCCS-CC--C---------STTTCSCC-CCEEECCSSCC
T ss_pred hHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCCCccc-ee--C---------HHHcccCC-ceEEEeeCCCc
Confidence 4588999999999999 7899887766699999999999999998 55 3 33 33444 99999998876
Q ss_pred cccc
Q 039375 81 SILQ 84 (311)
Q Consensus 81 ~~lp 84 (311)
....
T Consensus 116 ~c~c 119 (347)
T 2ifg_A 116 HCSC 119 (347)
T ss_dssp CCCG
T ss_pred cCCC
Confidence 5443
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.67 E-value=3.2e-05 Score=60.81 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=48.6
Q ss_pred ccccCccEEEEecCCCceeecCccccccC----CCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccc
Q 039375 198 VSFRNLTKLVAVGCKELIHLVTSSTAKTL----VRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLT 273 (311)
Q Consensus 198 ~~l~~L~~L~l~~~~~l~~l~~~~~l~~l----~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~ 273 (311)
..+++|+.|++++|..+++ .....+..+ ++|++|+|++|..+++-... ....+++|++|.+.+|+.++
T Consensus 82 ~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-------~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKGII-------ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp TTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-------HGGGCTTCCEEEEESCTTCC
T ss_pred cCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-------HHhcCCCCCEEECCCCCCCC
Confidence 3577888888888877887 444445443 47888888888876653211 12457888888888888776
Q ss_pred ee
Q 039375 274 SF 275 (311)
Q Consensus 274 ~~ 275 (311)
..
T Consensus 154 d~ 155 (176)
T 3e4g_A 154 EK 155 (176)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.66 E-value=0.00017 Score=63.74 Aligned_cols=60 Identities=22% Similarity=0.352 Sum_probs=32.5
Q ss_pred HhccccceEEecccc-----ceeeeeccccccccccc-cccCCCCCccEEEEeecCccccccccccccCcEEEEE
Q 039375 30 SSLIRLEELCMGNCS-----VEWEVERANTERSNASL-DELMLLPWLTTLEIDVKNDSILQEGFLARKLERFKIS 98 (311)
Q Consensus 30 ~~L~~Lq~L~l~~~~-----~~~~~~~p~~~~~~~~l-~~l~~L~~L~~L~l~~~~~~~lp~~~~l~~L~~l~~~ 98 (311)
.++++|+.|.+.... +.|.- ...+ .-+..+++|+.|+++++....++. +.+++|+.|.+.
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~--------~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~ 201 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIE--------QVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KPRPNLKSLEII 201 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCB--------CCBCHHHHHTCTTCCEEEEECCBTCBCCS-CBCTTCSEEEEE
T ss_pred hhcchhhheeecCcchhhccccccc--------ccCHHHHHhcCCCCcEEEEeCCCCceecc-ccCCCCcEEEEe
Confidence 677888888875432 11110 0001 223456778888887653233333 335677777665
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.63 E-value=0.00011 Score=64.98 Aligned_cols=81 Identities=16% Similarity=0.095 Sum_probs=52.3
Q ss_pred cCCCCCccEEecCCCCC----C-----cccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEE
Q 039375 4 LGQVTKLRLLDLRDCFH----L-----KVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLE 74 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~----l-----~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~ 74 (311)
+.++++|+.|.+.+... + ..++ .++..+++|++|++++|.-. .+ ..+. +++|++|+
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l------------~~~~-~~~L~~L~ 199 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SI------------GKKP-RPNLKSLE 199 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BC------------CSCB-CTTCSEEE
T ss_pred hhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-ee------------cccc-CCCCcEEE
Confidence 45678999999976321 1 1233 34588999999999987322 23 2233 88999999
Q ss_pred EeecCccccc-ccc---ccccCcEEEEEe
Q 039375 75 IDVKNDSILQ-EGF---LARKLERFKISI 99 (311)
Q Consensus 75 l~~~~~~~lp-~~~---~l~~L~~l~~~~ 99 (311)
+..+++..-. ..+ .+++|+.|.+..
T Consensus 200 L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 200 IISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp EECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred EecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 9876543211 112 378899888763
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.46 E-value=7.3e-06 Score=72.94 Aligned_cols=63 Identities=16% Similarity=0.306 Sum_probs=34.9
Q ss_pred CCCccEEecCCCCCCcccChhHHHhc-----cccceEEeccccceeeeecccccccccccccc-CCCCCccEEEEeecCc
Q 039375 7 VTKLRLLDLRDCFHLKVIAPNVISSL-----IRLEELCMGNCSVEWEVERANTERSNASLDEL-MLLPWLTTLEIDVKND 80 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~lp~~i~~~L-----~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l-~~L~~L~~L~l~~~~~ 80 (311)
+.+|++|+|++ +.++......+... .+|++|++++|.+...- . ..+ ..+.+|+.|++++|.+
T Consensus 71 ~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~--~---------~~l~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 71 LSSLRQLNLAG-VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG--L---------RTLLPVFLRARKLGLQLNSL 138 (372)
T ss_dssp HTTCCEEECTT-SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH--H---------HHTHHHHHTEEEEECCSSCC
T ss_pred HhhCCEEEecC-CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH--H---------HHHHHHHHhccHhhcCCCCC
Confidence 35677777877 45554433223443 57777788777664110 1 111 1244677777777665
Q ss_pred c
Q 039375 81 S 81 (311)
Q Consensus 81 ~ 81 (311)
.
T Consensus 139 ~ 139 (372)
T 3un9_A 139 G 139 (372)
T ss_dssp C
T ss_pred C
Confidence 4
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.45 E-value=7.2e-05 Score=63.11 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=54.8
Q ss_pred CCCCccEEecCCCCCCcccCh--hHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc-c
Q 039375 6 QVTKLRLLDLRDCFHLKVIAP--NVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS-I 82 (311)
Q Consensus 6 ~L~~L~~L~L~~c~~l~~lp~--~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~-~ 82 (311)
++++|++|+|++ |.++.++. ..++++++|++|++++|.+. .+. .+..+..+ +|+.|++++|.+. .
T Consensus 168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~~---------~l~~l~~l-~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 168 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELK-SER---------ELDKIKGL-KLEELWLDGNSLCDT 235 (267)
T ss_dssp HCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SGG---------GGGGGTTS-CCSEEECTTSTTGGG
T ss_pred hCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCccC-Cch---------hhhhcccC-CcceEEccCCcCccc
Confidence 578999999999 77776642 33489999999999999886 331 12444445 8999999888854 3
Q ss_pred cccc-------c-ccccCcEEE
Q 039375 83 LQEG-------F-LARKLERFK 96 (311)
Q Consensus 83 lp~~-------~-~l~~L~~l~ 96 (311)
+|.. + .+++|+.++
T Consensus 236 ~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 236 FRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CSSHHHHHHHHHHHCTTCCEES
T ss_pred cCcchhHHHHHHHHCcccCeEC
Confidence 4421 1 267777764
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.44 E-value=0.00085 Score=59.87 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=18.6
Q ss_pred cccCccEEEEecCCCceeecCccccccCCCCCEEeec
Q 039375 199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVY 235 (311)
Q Consensus 199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~ 235 (311)
.+.+|+.+.+.+. ++. .....+.++.+|+.+++.
T Consensus 295 ~~~~L~~i~l~~~--i~~-I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 295 GCSSLTEVKLLDS--VKF-IGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp TCTTCCEEEECTT--CCE-ECTTTTTTCTTCCEECCC
T ss_pred ccccccccccccc--cce-echhhhcCCCCCCEEEeC
Confidence 3456666666432 444 333455566666666664
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.98 E-value=0.023 Score=50.51 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=30.0
Q ss_pred ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccc
Q 039375 3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNC 43 (311)
Q Consensus 3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~ 43 (311)
.|.++.+|+.+.+.. .++.|+...+..+.+|+.+++..+
T Consensus 66 AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~ 104 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS 104 (394)
T ss_dssp TTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT
T ss_pred HhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC
Confidence 356788888888875 478887766688889999988654
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.17 E-value=0.067 Score=47.38 Aligned_cols=81 Identities=11% Similarity=0.132 Sum_probs=43.6
Q ss_pred ccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceecc
Q 039375 198 VSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCS 277 (311)
Q Consensus 198 ~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~ 277 (311)
..+.+|+.+.+.. .++. .....+.++.+|+.++|.+ .++.|... ....+.+|+++.+-. +++.+..
T Consensus 285 ~~c~~L~~i~l~~--~i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~~-------aF~~C~~L~~i~ip~--sv~~I~~ 350 (394)
T 4gt6_A 285 MNCPALQDIEFSS--RITE-LPESVFAGCISLKSIDIPE--GITQILDD-------AFAGCEQLERIAIPS--SVTKIPE 350 (394)
T ss_dssp TTCTTCCEEECCT--TCCE-ECTTTTTTCTTCCEEECCT--TCCEECTT-------TTTTCTTCCEEEECT--TCCBCCG
T ss_pred ccccccccccCCC--cccc-cCceeecCCCCcCEEEeCC--cccEehHh-------HhhCCCCCCEEEECc--ccCEEhH
Confidence 3456677776642 4555 3445666777788877763 24444221 112345566666642 2444421
Q ss_pred CCceecCCCccEEEEe
Q 039375 278 ANYTFKFPSLEYLEVI 293 (311)
Q Consensus 278 ~~~~~~~~~L~~L~i~ 293 (311)
..+..|.+|+.+.+.
T Consensus 351 -~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 351 -SAFSNCTALNNIEYS 365 (394)
T ss_dssp -GGGTTCTTCCEEEES
T ss_pred -hHhhCCCCCCEEEEC
Confidence 123466777777664
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.99 E-value=0.0016 Score=57.64 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=55.9
Q ss_pred CCCccEEecCCCCCCccc-ChhHHHhccccceEEeccccceeeeecccccccccccccc-CCCCCccEEEEeecCccc--
Q 039375 7 VTKLRLLDLRDCFHLKVI-APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDEL-MLLPWLTTLEIDVKNDSI-- 82 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~l-p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l-~~L~~L~~L~l~~~~~~~-- 82 (311)
..+|++|+|++ +.++.. ...++..+.+|++|++++|.+...- . ......+ ....+|++|++++|.+..
T Consensus 100 ~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~--~-----~~L~~~L~~~~~~L~~L~Ls~n~l~~~~ 171 (372)
T 3un9_A 100 RHALDEVNLAS-CQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA--C-----KDLRDLLLHDQCQITTLRLSNNPLTAAG 171 (372)
T ss_dssp SSCEEEEECTT-CCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH--H-----HHHHHHHHSTTCCCCEEECCSSCCHHHH
T ss_pred CCCceEEEecC-CCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH--H-----HHHHHHHHhcCCccceeeCCCCCCChHH
Confidence 36999999999 466533 3344456789999999999875111 1 0000222 346789999999988654
Q ss_pred ---cccccc-cccCcEEEEE
Q 039375 83 ---LQEGFL-ARKLERFKIS 98 (311)
Q Consensus 83 ---lp~~~~-l~~L~~l~~~ 98 (311)
++..+. .++|+.++++
T Consensus 172 ~~~l~~~L~~~~~L~~L~Ls 191 (372)
T 3un9_A 172 VAVLMEGLAGNTSVTHLSLL 191 (372)
T ss_dssp HHHHHHHHHTCSSCCEEECT
T ss_pred HHHHHHHHhcCCCcCEEeCC
Confidence 333332 6789998875
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.76 E-value=0.0034 Score=52.77 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=45.5
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhcc--ccceEEeccccceeeeeccccccccccccccCCCCCccEEEE
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLI--RLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEI 75 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~--~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l 75 (311)
++.+++|++|+|++ |.++.+.. + ..+. +|++|++++|++...+ |.. .+....-+..+++|+.||-
T Consensus 192 ~~~l~~L~~L~Ls~-N~i~~~~~-l-~~l~~l~L~~L~L~~Npl~~~~--~~~--~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 192 VQKAPNLKILNLSG-NELKSERE-L-DKIKGLKLEELWLDGNSLCDTF--RDQ--STYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHSTTCCEEECTT-SCCCSGGG-G-GGGTTSCCSEEECTTSTTGGGC--SSH--HHHHHHHHHHCTTCCEESS
T ss_pred HhhCCCCCEEECCC-CccCCchh-h-hhcccCCcceEEccCCcCcccc--Ccc--hhHHHHHHHHCcccCeECC
Confidence 45799999999999 88887733 3 6776 9999999999986444 200 0111133567888888764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.55 E-value=0.0067 Score=47.93 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=51.9
Q ss_pred cCCCCCccEEecCCCCCCccc-----ChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeec
Q 039375 4 LGQVTKLRLLDLRDCFHLKVI-----APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVK 78 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~l-----p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~ 78 (311)
+...++|++|+|++|..++.- ...+ ....+|++|++++|.+. .- | .....+.+...++|++|+++.|
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n~i~-~~-g-----~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSN-DP-V-----AFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCC-HH-H-----HHHHHHHHHHCSSCCEEECCSS
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCCCCC-hH-H-----HHHHHHHHHhCCCcCEEECcCC
Confidence 345678888888885366532 2232 55677888888888764 10 0 0111134455577888888877
Q ss_pred Cccc-----cccccc-cccCcEEEE
Q 039375 79 NDSI-----LQEGFL-ARKLERFKI 97 (311)
Q Consensus 79 ~~~~-----lp~~~~-l~~L~~l~~ 97 (311)
.++. +...+. .+.|+.+++
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEe
Confidence 7554 333332 567888877
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.52 E-value=0.006 Score=48.23 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=34.5
Q ss_pred HhccccceEEeccc-cceeeeeccccccccccccccCCCCCccEEEEeecCccc-----cccccc-cccCcEEEEE
Q 039375 30 SSLIRLEELCMGNC-SVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI-----LQEGFL-ARKLERFKIS 98 (311)
Q Consensus 30 ~~L~~Lq~L~l~~~-~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~-----lp~~~~-l~~L~~l~~~ 98 (311)
...++|++|++++| .+..+ +.....+.+...++|++|+++.|.+.. +...+. .+.|+.++++
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~-------g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVP-------TLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHH-------HHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred hcCCCCCEEEecCCCCCCHH-------HHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence 55667778888777 65310 011111445556777777777766543 222222 4567777765
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.33 E-value=0.01 Score=43.99 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=28.0
Q ss_pred EEecCCCCCCc--ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC
Q 039375 12 LLDLRDCFHLK--VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN 79 (311)
Q Consensus 12 ~L~L~~c~~l~--~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~ 79 (311)
+++-++ +.++ .+|.++ . .+|++|++++|.+. .+. + ..+..+++|+.|++.+|.
T Consensus 12 ~v~Cs~-~~L~~~~vP~~l-p--~~l~~L~Ls~N~l~-~l~-~---------~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAF-P--VDTTELVLTGNNLT-ALP-P---------GLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS-SCCCTTTSCSCC-C--TTCSEEECTTSCCS-SCC-T---------TTGGGCTTCCEEECCSSC
T ss_pred EEEeCC-CCCccccCCCCC-C--cCCCEEECCCCcCC-ccC-h---------hhhhhccccCEEEecCCC
Confidence 445555 4555 555433 2 24666666666665 442 1 334455666666666554
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.07 E-value=2.5 Score=37.01 Aligned_cols=38 Identities=11% Similarity=0.230 Sum_probs=28.9
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNC 43 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~ 43 (311)
+..+.+|+.+.+.. .+..++...+..+.+|+.+.+..+
T Consensus 133 F~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 133 FHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhcccccccccc--eeeeecccceecccccccccccce
Confidence 55678888888865 456777666688889999998764
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.39 E-value=0.083 Score=38.97 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=28.0
Q ss_pred CccEEecCCCCCCcccChhHHHhccccceEEeccccc
Q 039375 9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSV 45 (311)
Q Consensus 9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~ 45 (311)
+|++|+|++ |.|+.+|.+++..+.+|++|+|.+|+.
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 678888888 778888777667788888888887754
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=85.60 E-value=2.4 Score=36.83 Aligned_cols=80 Identities=11% Similarity=0.133 Sum_probs=41.4
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL 83 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l 83 (311)
+....+|+.+.+.. .+..++...+..+.+|+.+.+..+ +. .+. . ..+..+.+|+.+.+.. ++..+
T Consensus 213 f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~-~---------~aF~~~~~l~~i~l~~-~i~~i 277 (379)
T 4h09_A 213 FSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN-VT-SIG-S---------FLLQNCTALKTLNFYA-KVKTV 277 (379)
T ss_dssp TTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT-CC-EEC-T---------TTTTTCTTCCEEEECC-CCSEE
T ss_pred cccccccceeeecc--ceeEEccccccCCccceEEEcCCC-cc-EeC-c---------cccceeehhccccccc-cceec
Confidence 34455666666654 345555544466677777777554 22 231 1 3344455566665532 24444
Q ss_pred ccccc--cccCcEEEEE
Q 039375 84 QEGFL--ARKLERFKIS 98 (311)
Q Consensus 84 p~~~~--l~~L~~l~~~ 98 (311)
+.... +.+|+.+.+.
T Consensus 278 ~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 278 PYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp CTTTTTTCTTCCEEEEC
T ss_pred ccccccccccccccccc
Confidence 44332 5566665553
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=81.72 E-value=1.5 Score=38.12 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=72.0
Q ss_pred cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375 4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL 83 (311)
Q Consensus 4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l 83 (311)
+....+|+.+.+.. .++.++...+..+.+|+.+.+... +. .+. . ..+..+.+|+.+.+..+.+..+
T Consensus 236 f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~-~---------~aF~~c~~L~~i~l~~~~i~~I 301 (379)
T 4h09_A 236 FYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYAK-VK-TVP-Y---------LLCSGCSNLTKVVMDNSAIETL 301 (379)
T ss_dssp TTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECCC-CS-EEC-T---------TTTTTCTTCCEEEECCTTCCEE
T ss_pred ccCCccceEEEcCC--CccEeCccccceeehhcccccccc-ce-ecc-c---------ccccccccccccccccccccee
Confidence 45677888888876 367777666688889999998654 32 331 1 4556788999999987778888
Q ss_pred ccccc--cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeE
Q 039375 84 QEGFL--ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDI 142 (311)
Q Consensus 84 p~~~~--l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L 142 (311)
+.... +.+|+.+.+. .....++. . .+ .+.++|+.+.+..+++.+
T Consensus 302 ~~~aF~~c~~L~~i~lp-~~l~~I~~---~-aF----------~~C~~L~~i~ip~~v~~I 347 (379)
T 4h09_A 302 EPRVFMDCVKLSSVTLP-TALKTIQV---Y-AF----------KNCKALSTISYPKSITLI 347 (379)
T ss_dssp CTTTTTTCTTCCEEECC-TTCCEECT---T-TT----------TTCTTCCCCCCCTTCCEE
T ss_pred hhhhhcCCCCCCEEEcC-ccccEEHH---H-Hh----------hCCCCCCEEEECCccCEE
Confidence 77654 6788887764 11111110 0 11 455677777776655544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=77.20 E-value=1.2 Score=35.21 Aligned_cols=68 Identities=10% Similarity=0.179 Sum_probs=38.6
Q ss_pred CCCccEEecCCCCCCccc-----ChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375 7 VTKLRLLDLRDCFHLKVI-----APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS 81 (311)
Q Consensus 7 L~~L~~L~L~~c~~l~~l-----p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 81 (311)
=+.|++|+|++++.|+.- -..+ ..-..|++|++++|.+. .. | -.+..+.++.=+.|++|+++.|.++
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~ig-d~-g-----a~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAIS-DS-E-----ARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCB-HH-H-----HTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCC-hH-H-----HHHHHHHHhcCCccCeEecCCCcCC
Confidence 457888888774465432 2222 44557888888888764 11 0 1111133334467888888777654
Q ss_pred c
Q 039375 82 I 82 (311)
Q Consensus 82 ~ 82 (311)
.
T Consensus 112 ~ 112 (197)
T 1pgv_A 112 P 112 (197)
T ss_dssp H
T ss_pred H
Confidence 3
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=62.90 E-value=6 Score=31.19 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=44.3
Q ss_pred CCCCCccEEecCCCCCCcccCh----hHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeec
Q 039375 5 GQVTKLRLLDLRDCFHLKVIAP----NVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVK 78 (311)
Q Consensus 5 ~~L~~L~~L~L~~c~~l~~lp~----~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~ 78 (311)
..=+.|+.|+|++ +.|+.... +.+..-..|++|++++|.|. + .+..+..+.++.=+.|+.|+++++
T Consensus 67 ~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig-----~--~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 67 CNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESNFLT-----P--ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC-----H--HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCCcCC-----H--HHHHHHHHHHhhCCceeEEECCCC
Confidence 3456899999999 67764321 22355678999999999885 1 112223355566677999999754
Done!