BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039376
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
A +D+ R+L M + D+ D SG TPL AAI G+ + ++L+K+ ++ N
Sbjct: 22 ARAGQDDEVRIL-----MANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLL-SVTGVEEEDSHEKYSNPFAGECG-LKLLEILIEF 271
+++G P+H AA GH E VE LL + V D++ A + G L+++E+L+++
Sbjct: 76 ADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY 135
Query: 272 N 272
Sbjct: 136 G 136
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ TDT G TPL AA G+ + ++L+KY ++ N +++ G+ + +G+ + E
Sbjct: 105 DVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAE 163
Query: 236 YL 237
L
Sbjct: 164 IL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
A +D+ R+L M + D+ D +G TPL AA G+ + ++L+K ++ N
Sbjct: 22 ARAGQDDEVRIL-----MANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLL-SVTGVEEEDSHEKYSNPFAGECG-LKLLEILIE 270
++ +G P+H AAR GH E VE LL + V DSH A + G L+++E+L++
Sbjct: 76 KDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
A +D+ R+L M + D+ D G TPL AA +G+ + ++L+K+ ++ N
Sbjct: 22 ARAGQDDEVRIL-----MANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLLSVTG-VEEEDSHEKYSNPFAGECG-LKLLEILIE 270
R+ G P+H AA +GH E VE LL V +D++ A + G L+++E+L++
Sbjct: 76 RDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 142 FTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAK 201
+E L + N N+D LL+ D+ + +D+ G TPL AA G+ + K
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGADVNA------SDSDGKTPLHLAAENGHKEVVK 54
Query: 202 ILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
+L+ + PN ++ G+ P+H AA +GH+E V+ LLS
Sbjct: 55 LLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLS 91
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
D+ G TPL AA G+ + K+L+ + PN ++ G+ P+H AA +GH+E V+ LLS
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLS 124
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
A +D+ R+L M + D+ TD G TPL AA G+ + ++L+KY ++ N
Sbjct: 22 ARAGQDDEVRIL-----MANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYS--NPFAGECGLKLLEILIEF 271
+ G P+H AA +GH E VE LL +E ++ + A + L+++E+L+++
Sbjct: 76 WDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 272 N 272
Sbjct: 136 G 136
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTG-V 243
G L AA G +IL+ ++ N + +G P+H AA++GH E VE LL V
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADV-NATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV 73
Query: 244 EEEDSHEKYSNPFAGECG-LKLLEILIE 270
D++ A + G L+++E+L++
Sbjct: 74 NAWDNYGATPLHLAADNGHLEIVEVLLK 101
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D G TPL AA G+ + ++L+KY ++ N +++ G+ + +G+ + E
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAE 163
Query: 236 YL 237
L
Sbjct: 164 IL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
A +D+ R+L M + D+ DT G TPL AA VG+ + ++L+K ++ N
Sbjct: 22 ARAGQDDEVRIL-----MANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLLSVTG-VEEEDSHEKYSNPFAGECG-LKLLEILIEF 271
+ G P+H AA+ GH E VE LL V +D+ A + G L+++E+L+++
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 272 N 272
Sbjct: 136 G 136
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
G L AA G +IL+ ++ N + G P+H AAR GH E VE LL
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLL 67
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ DT G TPL AA G+ + ++L+KY ++ N +++ G+ + +G+ + E
Sbjct: 105 DVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAE 163
Query: 236 YL 237
L
Sbjct: 164 IL 165
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 186 TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
TPL AA +G+T K+L++ N N PN+ G P+H AAR GH ETV LL
Sbjct: 82 TPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALL 133
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 186 TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
TPL AA G+T+ AK L++ NK N + + Q P+HCAAR GH V+ LL
Sbjct: 49 TPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL 100
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 177 LEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEY 236
++ T G TPL A+ GN K K L+++ ++ N + ++G P+H AA+ GH + V
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTL 362
Query: 237 LL 238
LL
Sbjct: 363 LL 364
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 186 TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
TPL A+ +G+ K L++ + PN+ N + P+H AAR+GH E +YLL
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLL 67
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
+G TPL AA + A+ L++Y + N + G P+H AA+ GH E V LLS
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLS 266
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
SG TPL A G+ A +L+K+ + + R+G P+H A+ G+ + V++LL
Sbjct: 277 SGLTPLHLVAQEGHVPVADVLIKHGV-MVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV 243
G TPL AA G + A++L++ + + PN + G P+H A + + V+ LL G
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204
Query: 244 EEEDSHEKYS 253
+ Y+
Sbjct: 205 PHSPAWNGYT 214
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
G TPL AA G+ + +L+ N N+ N+ G P+H A+ GH + L+
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLI 298
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
A +D+ R+L M + D+ TD SG TPL AA G+ + ++L+K+ ++ N
Sbjct: 22 ARAGQDDEVRIL-----MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLL 238
+ +G P+H AA GH E VE LL
Sbjct: 76 IDIMGSTPLHLAALIGHLEIVEVLL 100
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D G TPL AA++G+ + ++L+K+ ++ N + G P+H AA GH E VE
Sbjct: 72 DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVE 130
Query: 236 YLL 238
LL
Sbjct: 131 VLL 133
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ DT G TPL AAI+G+ + ++L+K+ ++ N +++ G+ + +G+ + E
Sbjct: 105 DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAE 163
Query: 236 YL 237
L
Sbjct: 164 IL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ +D SG TPL AA G+ + ++L+KY ++ M + G P+H AA GH E VE
Sbjct: 72 DVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQ-GYTPLHLAAEDGHLEIVE 130
Query: 236 YLL 238
LL
Sbjct: 131 VLL 133
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
A +D+ R+L M + D+ D G TPL G+ + ++L+KY ++ N
Sbjct: 22 ARAGQDDEVRIL-----MANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNP--FAGECG-LKLLEILIE 270
++ G P+H AA GH E VE LL ++ Y+ P A E G L+++E+L++
Sbjct: 76 SDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYT-PLHLAAEDGHLEIVEVLLK 134
Query: 271 FN 272
+
Sbjct: 135 YG 136
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
G L AA G +IL+ ++ N + G P+H +GH E +E LL
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADV-NANDWFGITPLHLVVNNGHLEIIEVLL 67
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D++ D G TPL AA+ G+ + ++L+KY ++ N + G P+H AA GH E VE
Sbjct: 72 DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV-NAFDMTGSTPLHLAADEGHLEIVE 130
Query: 236 YLL 238
LL
Sbjct: 131 VLL 133
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D +G TPL AA+ G+ + ++L+K+ ++ + + G P+H AA +GH E VE
Sbjct: 39 DVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVE 97
Query: 236 YLLSVTGVEEEDSHEKYSNPF---AGECGLKLLEILIEFN 272
LL G + S P A E L+++E+L+++
Sbjct: 98 VLLKY-GADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYG 136
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTG-V 243
G L AA G +IL+ ++ N + G P+H AA SGH E VE LL V
Sbjct: 15 GKKLLEAARAGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 244 EEEDSHEKYSNPFAGECG-LKLLEILIEFN 272
+ D + A G L+++E+L+++
Sbjct: 74 DAADVYGFTPLHLAAMTGHLEIVEVLLKYG 103
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRE 232
D+ D +G TPL AA G+ + ++L+KY ++ N +++ G+ + +G+ +
Sbjct: 105 DVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNED 160
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
A +D+ R+L M + D+ TD SG TPL AA G+ + ++L+K+ ++ N
Sbjct: 22 ARAGQDDEVRIL-----MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLL 238
+ G P+H AA GH E VE LL
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVLL 100
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D G TPL AA++G+ + ++L+K+ ++ N + G P+H AA GH E VE
Sbjct: 72 DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVE 130
Query: 236 YLL 238
LL
Sbjct: 131 VLL 133
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ DT G TPL AAI+G+ + ++L+K+ ++ N +++ G+ + +G+ + E
Sbjct: 105 DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAE 163
Query: 236 YL 237
L
Sbjct: 164 IL 165
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ DT+G TPL AA +G+ + ++L+KY ++ N ++ G P++ AA GH E VE
Sbjct: 60 DVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVE 118
Query: 236 YLL 238
LL
Sbjct: 119 VLL 121
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
A +D+ R+L M + D D G TPL AA VG+ + ++L++ ++ N
Sbjct: 10 ARAGQDDEVRIL-----MANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV-NA 63
Query: 214 RNRIGQCPIHCAARSGHRETVEYLL 238
+ G P+H AA GH E VE LL
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLL 88
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL-SVTGV 243
G L AA G +IL+ N N + G+ P+H AA GH E VE LL + V
Sbjct: 3 GKKLLEAARAGQDDEVRILMA-NGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV 61
Query: 244 EEEDSHEKYSNPFAGECG-LKLLEILIEFN 272
D++ A G L+++E+L+++
Sbjct: 62 NAVDTNGTTPLHLAASLGHLEIVEVLLKYG 91
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 166 DEFLDMI-SPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHC 224
D D+I + D+ +D+ G TPL AA G+ + K+L+ ++ N ++ G+ P+H
Sbjct: 18 DRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHH 76
Query: 225 AARSGHRETVEYLLSVTG-VEEEDSHEKYSNPFAGECGLK-LLEILI 269
AA +GH+E V+ L+S V +DS + A E G K ++++LI
Sbjct: 77 AAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D+ G TPL AA G+ + K+L+ ++ N ++ G+ P+H AA +GH+E V+
Sbjct: 62 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVK 120
Query: 236 YLLS 239
L+S
Sbjct: 121 LLIS 124
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 142 FTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAK 201
+E L + N N+D LL+ D + +D+ G TPL AA G+ + K
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGADPNA------SDSDGRTPLHYAAENGHKEIVK 54
Query: 202 ILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
+L+ + PN ++ G+ P+H AA +GH+E V+ LLS
Sbjct: 55 LLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLS 91
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
D+ G TPL AA G+ + K+L+ + PN ++ G+ P+H AA +GH+E V+ LLS
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLS 124
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 166 DEFLDMI-SPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHC 224
D D+I + D+ +D+ G TPL AA G+ + K+L+ ++ N ++ G+ P+H
Sbjct: 18 DRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHY 76
Query: 225 AARSGHRETVEYLLSVTG-VEEEDSHEKYSNPFAGECGLK-LLEILI 269
AA+ GH+E V+ L+S V +DS + +A + G K ++++LI
Sbjct: 77 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 123
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 160 EAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQ 219
E H+ + + L + D+ D+ G TPL AA G+ + K+L+ ++ N ++ G+
Sbjct: 47 EGHKEIVKLL-ISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGR 104
Query: 220 CPIHCAARSGHRETVEYLLS 239
P+H AA+ GH+E V+ L+S
Sbjct: 105 TPLHYAAKEGHKEIVKLLIS 124
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
A +D+ R+L M + D+ D G TPL AA +G+ + ++L+KY ++ N
Sbjct: 22 ARAGQDDEVRIL-----MANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLL 238
+ G P+H AA GH E VE LL
Sbjct: 76 EDNFGITPLHLAAIRGHLEIVEVLL 100
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D G TPL AAI G+ + ++L+K+ ++ N +++ G+ + +G+ + E
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAE 130
Query: 236 YL 237
L
Sbjct: 131 IL 132
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 171 MISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
M + D+ D +G TPL AA G+ + ++L+K+ ++ N R+ G+ P+H AA GH
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGH 92
Query: 231 RETVEYLL 238
E VE LL
Sbjct: 93 LEIVEVLL 100
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ +D +G TPL AA G+ + ++L+K+ ++ N + G P+H AA+ GH E VE
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVE 130
Query: 236 YLL 238
LL
Sbjct: 131 VLL 133
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 171 MISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
M + D+ TD G TPL AA G+ + ++L+K ++ N + G P+H AA +GH
Sbjct: 34 MANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADV-NASDLTGITPLHLAAATGH 92
Query: 231 RETVEYLL 238
E VE LL
Sbjct: 93 LEIVEVLL 100
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
G L AA G +IL+ ++ N + G P+H AA +GH E VE LL
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLL 67
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 142 FTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAK 201
F + G A +D+ R+L M + D+ TD +G TPL AA G + +
Sbjct: 2 FGQDLGKKLLEAAAAGQDDEVRIL-----MANGADVNATDDNGLTPLHLAAANGQLEIVE 56
Query: 202 ILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
+L+K ++ N + G P+H AA GH E VE LL
Sbjct: 57 VLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVLL 92
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 171 MISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
M + D+ D G TPL AA G+ + ++L+K ++ N + +G P+H AA GH
Sbjct: 34 MANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGH 92
Query: 231 RETVEYLLSVTGVEEEDSHEKYSNPF---AGECGLKLLEILIEF 271
E VE LL G + + P A L+++E+L+++
Sbjct: 93 LEIVEVLLK-NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D +G TPL AA G+ + ++L+KY ++ N +++ G+ + +G+ + E
Sbjct: 105 DVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV-NAQDKFGKTAFDISINNGNEDLAE 163
Query: 236 YL 237
L
Sbjct: 164 IL 165
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D G TPL AA G+ + ++L+K ++ N +++ G P+H AAR GH E VE
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVE 118
Query: 236 YLL 238
LL
Sbjct: 119 VLL 121
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVE 244
G L AA G +IL+ ++ N +++ G P+H AAR GH E VE LL
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 245 EEDSHEKYS--NPFAGECGLKLLEILIE 270
+ Y+ + A E L+++E+L++
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLK 89
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D G TPL AA G+ + ++L+K ++ N +++ G P+H AAR GH E VE
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVE 118
Query: 236 YLL 238
LL
Sbjct: 119 VLL 121
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVE 244
G L AA G +IL+ ++ N +++ G P+H AAR GH E VE LL
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 245 EEDSHEKYS--NPFAGECGLKLLEILIE 270
+ Y+ + A E L+++E+L++
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLK 89
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
A +D+ R+L M + D+ D +G TPL AA G+ + ++L+K+ ++ +
Sbjct: 22 ARAGQDDEVRIL-----MANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLL-SVTGVEEEDSHEKYSNPFAGECG-LKLLEILIE 270
+ G P+H AA GH E VE LL + V DS A + G L+++E+L++
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
G L AA G +IL+ ++ N + G P+H AA SGH E VE LL
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLL 67
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 160 EAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQ 219
E H + E L + + D+ D G TPL AA G+ + ++L+K ++ N +++ G
Sbjct: 57 EGHLEIVEVL-LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGY 114
Query: 220 CPIHCAARSGHRETVEYLL 238
P+H AAR GH E VE LL
Sbjct: 115 TPLHLAAREGHLEIVEVLL 133
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVE 244
G L AA G +IL+ ++ N +++ G P+H AAR GH E VE LL
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 73
Query: 245 EEDSHEKYS--NPFAGECGLKLLEILIE 270
+ Y+ + A E L+++E+L++
Sbjct: 74 NAKDKDGYTPLHLAAREGHLEIVEVLLK 101
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D +G TPL AA G+ + K+L++ ++ N +++ G+ P+H AAR+GH E V+
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVK 85
Query: 236 YLLSVTG-VEEEDSHEKYSNPFAGECG-LKLLEILIE 270
LL V +D + + A G L+++++L+E
Sbjct: 86 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTG 242
+G TPL AA G+ + K+L++ ++ N +++ G+ P+H AAR+GH E V+ LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 243 -VEEEDSHEKYSNPFAGECG-LKLLEILIE 270
V +D + + A G L+++++L+E
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D +G TPL AA G+ + K+L++ ++ N +++ G+ P+H AAR+GH E V+
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVK 85
Query: 236 YLL 238
LL
Sbjct: 86 LLL 88
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV-T 241
+G TPL AA G+ + K+L++ ++ N +++ G+ P+H AAR+GH E V+ LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 242 GVEEEDSHEKYSNPFAGECG-LKLLEILIE 270
V +D + + A G L+++++L+E
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D +G TPL AA+ G+ + ++L+K ++ N + G P+H AA GH E VE
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVE 130
Query: 236 YLL 238
LL
Sbjct: 131 VLL 133
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
G L AA G +IL+ ++ N + G P+H AA +GH E VE LL
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLL 67
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D G TPL AA++G+ + ++L+K ++ N G+ P+H AA + H E VE
Sbjct: 39 DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV-NATGNTGRTPLHLAAWADHLEIVE 97
Query: 236 YLL 238
LL
Sbjct: 98 VLL 100
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
G L AA G +IL ++ N + G P+H AA GH E VE LL
Sbjct: 15 GKKLLEAARAGQDDEVRILTANGADV-NANDYWGHTPLHLAAMLGHLEIVEVLL 67
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 171 MISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
M + D+ D G TPL AA + + ++L+K+ ++ N + G P+H AA GH
Sbjct: 34 MANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDNDGSTPLHLAALFGH 92
Query: 231 RETVEYLL 238
E VE LL
Sbjct: 93 LEIVEVLL 100
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
DTSG +P+ AA G K+LV++ ++ N+ + G PIH A + GH V +L +
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA- 128
Query: 241 TGVEEEDSHEK 251
E D H +
Sbjct: 129 ----ESDLHRR 135
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 193 IVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
+ G+T A L+K + PN+++ G P+H AAR+G +T++ L+
Sbjct: 50 MFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFLDTLKVLV 94
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
DTSG +P+ AA G K+LV++ ++ N+ + G PIH A + GH V +L +
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA- 122
Query: 241 TGVEEEDSHEKYSNPFAGECGLKLLEILIE 270
E D H + + GL LE+ ++
Sbjct: 123 ----ESDLHRRDAR------GLTPLELALQ 142
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 193 IVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
+ G+T A L+K + PN+++ G P+H AAR+G +T++ L+
Sbjct: 44 MFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFLDTLKVLV 88
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 19/141 (13%)
Query: 114 QLRRALVRKDWKEVERFISE---NPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLD 170
+L A R D +EV R + +PD L +F + T M + A LL +
Sbjct: 13 RLSGAAARGDVQEVRRLLHRELVHPDALN-RFGK---TALQVMMFGSPAVALELLKQG-- 66
Query: 171 MISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
SP D SG +P+ AA G K+LV++ ++ N + G PIH A R GH
Sbjct: 67 -ASP---NVQDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGH 121
Query: 231 RETVEYLLSVTGVEEEDSHEK 251
V +L E D H +
Sbjct: 122 SSVVSFL-----APESDLHHR 137
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 19/141 (13%)
Query: 114 QLRRALVRKDWKEVERFISE---NPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLD 170
+L A R D +EV R + +PD L +F + T M + A LL +
Sbjct: 11 RLSGAAARGDVQEVRRLLHRELVHPDALN-RFGK---TALQVMMFGSPAVALELLKQG-- 64
Query: 171 MISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
SP D SG +P+ AA G K+LV++ ++ N + G PIH A R GH
Sbjct: 65 -ASP---NVQDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGH 119
Query: 231 RETVEYLLSVTGVEEEDSHEK 251
V +L E D H +
Sbjct: 120 SSVVSFL-----APESDLHHR 135
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
A +D+ R+L M + D+ D G TPL AA+ + + ++L+K ++ N
Sbjct: 22 ARAGQDDEVRIL-----MANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLL 238
+ IG+ P+H A GH E VE LL
Sbjct: 76 IDAIGETPLHLVAMYGHLEIVEVLL 100
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
G L AA G +IL+ ++ N +++G P+H AA + H E VE LL
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLL 67
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
G TPL +AA G+ + K L+ ++ N R++ G P+H AA++GH E V+ LL+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ G TPL AA G+ + K+L+ ++ N R++ G P H A ++GH E V+
Sbjct: 34 DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAKKNGHHEIVK 92
Query: 236 YL 237
L
Sbjct: 93 LL 94
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D+ G TPL AA G+ + ++L+K ++ N + G P+H AA GH E VE
Sbjct: 72 DVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADV-NANDHNGFTPLHLAANIGHLEIVE 130
Query: 236 YLL 238
LL
Sbjct: 131 VLL 133
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
G L AA G +IL+ ++ N + +G P+H AA GH E VE LL
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADV-NASDHVGWTPLHLAAYFGHLEIVEVLL 67
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
DL + D G +PL A G + ++L+ + N+ NR P+H AA GHR+ V+
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQ 84
Query: 236 YLL 238
LL
Sbjct: 85 KLL 87
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
DL + D G +PL A G + ++L+ + N+ NR P+H AA GHR+ V+
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQ 89
Query: 236 YLL 238
LL
Sbjct: 90 KLL 92
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
A +D+ R+L M + D+ D G TPL A G+ + ++L+K ++ N
Sbjct: 22 ARAGQDDEVRIL-----MANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLL 238
+ IG P+H AA GH E E LL
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLL 100
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTG-V 243
G L A G +IL+ ++ N + G P+H AA+ GH E VE LL V
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 244 EEEDSHEKYSNPFAGECG-LKLLEILIEFN 272
DS + A G L+++E+L+E+
Sbjct: 74 NASDSWGRTPLHLAATVGHLEIVEVLLEYG 103
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ +D+ G TPL AA VG+ + ++L++Y ++ N +++ G+ + +G+ + E
Sbjct: 72 DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDLAE 130
Query: 236 YL 237
L
Sbjct: 131 IL 132
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
D +G TPL A G+ K ++L+++ K L N P+H AA++GH + V+ LLS
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 180 TDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
T+ G T L A+I G+ + + L++ N + PN+++ G P+H A GH + VE LL
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ + G T L A I N K LV+ N+ N + G P+H AA G+ + E
Sbjct: 65 DINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAE 123
Query: 236 YLLS 239
YL+S
Sbjct: 124 YLIS 127
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 141 KFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAA 200
+ +S GT H A E +LL + + D+ D G TPL +AA G +A
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLL-----IQARYDVNIKDYDGWTPLHAAAHWGKEEAC 248
Query: 201 KILVKYNKNLPNMR--NRIGQCPIHCA 225
+ILV +NL +M N++GQ A
Sbjct: 249 RILV---ENLCDMEAVNKVGQTAFDVA 272
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 180 TDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
TD G +PL AA G+ ++L++ + + R ++ + P+H AA GH VE LL
Sbjct: 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHANIVEVLL 87
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 173 SPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRE 232
S L + T G +PL AA+ G +L+K+ N RN P+H A + GH +
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQ 133
Query: 233 TVEYLL 238
V+ LL
Sbjct: 134 VVKCLL 139
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 170 DMISPLDLEETDTSGG------TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIH 223
D+I PL L+ +G PL A G+ + K L+ N PN ++ G P+
Sbjct: 100 DLI-PLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLI 157
Query: 224 CAARSGHRETVEYLL 238
A GH E V LL
Sbjct: 158 YACSGGHHELVALLL 172
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 169 LDMISPLDLEETDTS-----GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIH 223
D++ + E D S G T L +A G+T+ K LV++ N+ N + G P+H
Sbjct: 50 FDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLH 108
Query: 224 CAARSGHRETVEYLL 238
CAA + + ++L+
Sbjct: 109 CAASCNNVQVCKFLV 123
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 169 LDMISPLDLEETDTS-----GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIH 223
D++ + E D S G T L +A G+T+ K LV++ N+ N + G P+H
Sbjct: 50 FDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLH 108
Query: 224 CAARSGHRETVEYLL 238
CAA + + ++L+
Sbjct: 109 CAASCNNVQVCKFLV 123
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 186 TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
TPL AA + +A K L+K L + ++ G +H AA+ GH E V+YLLS
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGA-LVDPKDAEGSTCLHLAAKKGHYEVVQYLLS 98
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
G L AA G +IL+ ++ N +++ G P+H AAR GH E VE LL
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL 55
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
G L AA G +IL+ ++ +++ G P+H AAR+GH E V+ LL
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLL 77
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTG-V 243
G L A G +IL+ ++ N + G P+H AA+ GH E VE LL V
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 244 EEEDSHEKYSNPFAGECG-LKLLEILIEFN 272
D + A G L+++E+L+E+
Sbjct: 74 NASDIWGRTPLHLAATVGHLEIVEVLLEYG 103
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ +D G TPL AA VG+ + ++L++Y ++ N +++ G+ + +G+ + E
Sbjct: 72 DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDLAE 130
Query: 236 YL 237
L
Sbjct: 131 IL 132
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 166 DEFLDMISPLDL--EETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIH 223
++ + +++PL++ +D TPL AA + ++L+++ ++ + +++ G P+H
Sbjct: 38 EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLH 96
Query: 224 CAARSGHRETVEYLL 238
A GH E E LL
Sbjct: 97 NACSYGHYEVTELLL 111
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 186 TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
TPL AA + ++L K+ + N + +GQ +H AA +GH +T LLS
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLLLS 301
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 135 PDTLYAKFTESC-GTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAI 193
PD SC G + + E++A ++ +F+ + L +TD +G T L AA
Sbjct: 8 PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-NQTDRTGATALHLAAA 66
Query: 194 VGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
+ AAK L++ + + N+++ +G+ P+H A + + + L+
Sbjct: 67 YSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILI 110
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 33.5 bits (75), Expect = 0.15, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
G L AA G +IL+ ++ +++ G P+H AAR+GH E V+ LL
Sbjct: 7 GKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLL 59
Score = 28.9 bits (63), Expect = 3.7, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
A +D+ R+L M + D+ D +G TPL AA G+ + K+L++ ++ N
Sbjct: 14 ARAGQDDEVRIL-----MANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-NA 67
Query: 214 RNRIGQCPIHCAARSGHRETVEYL 237
+++ G+ + +G+ + E L
Sbjct: 68 QDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
D PL AA VG+ K ++L K+ N +++ G P+ A GH + L+
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Query: 241 TGVE 244
G E
Sbjct: 197 YGAE 200
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 12/160 (7%)
Query: 115 LRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP 174
L +A + ++ +V+ + P L K + L S++ +AH + L +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF----QAHEITSFLLSKMEN 61
Query: 175 LDLEET-DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRI---GQCPIHCAARSGH 230
++L++ D SG TP A VGN + K L Y++ L N+I G +H A
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSL--YDRPLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 231 RETVEYLL-SVTGVEEEDSHEKYSNPFAGECG-LKLLEIL 268
E ++L+ + V +D + A G LKL+E+L
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVE 244
PL AA VG+ K ++L K+ N +++ G P+ A GH + L+ G E
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 12/160 (7%)
Query: 115 LRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP 174
L +A + ++ +V+ + P L K + L S++ +AH + L +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF----QAHEITSFLLSKMEN 61
Query: 175 LDLEET-DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRI---GQCPIHCAARSGH 230
++L++ D SG TP A VGN + K L Y++ L N+I G +H A
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSL--YDRPLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 231 RETVEYLL-SVTGVEEEDSHEKYSNPFAGECG-LKLLEIL 268
E ++L+ + V +D + A G LKL+E+L
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
D +G + AA G + L+++ ++ N+ + G P+H AA+ GH VE+L+
Sbjct: 67 DRTGFAVIHDAARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 241 T 241
T
Sbjct: 126 T 126
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVE 244
PL AA VG+ K ++L K+ N +++ G P+ A GH + L+ G E
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 12/160 (7%)
Query: 115 LRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP 174
L +A + ++ +V+ + P L K + L S++ +AH + L +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF----QAHEITSFLLSKMEN 61
Query: 175 LDLEET-DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRI---GQCPIHCAARSGH 230
++L++ D SG TP A VGN + K L Y++ L N+I G +H A
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSL--YDRPLKPDLNKITNQGVTCLHLAVGKKW 119
Query: 231 RETVEYLL-SVTGVEEEDSHEKYSNPFAGECG-LKLLEIL 268
E ++L+ + V +D + A G LKL+E+L
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
D +G + AA G + L+++ ++ N+ + G P+H AA+ GH VE+L+
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 241 T 241
T
Sbjct: 126 T 126
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 168 FLDMISPL-----DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI 222
FLD + L D+ D G PL AA G+ + + LVK+ + RN G
Sbjct: 82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
Query: 223 HCAARSGHRETVEYL 237
A G E V +
Sbjct: 142 DLARLYGRNEVVSLM 156
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
D +G + AA G + L+++ ++ N+ + G P+H AA+ GH VE+L+
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 241 T 241
T
Sbjct: 126 T 126
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 168 FLDMISPL-----DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI 222
FLD + L D+ D G PL AA G+ + + LVK+ + RN G
Sbjct: 82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
Query: 223 HCAARSGHRETVEYL 237
A G E V +
Sbjct: 142 DLARLYGRNEVVSLM 156
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
D +G + AA G + L+++ ++ N+ + G P+H AA+ GH VE+L+
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 241 T 241
T
Sbjct: 126 T 126
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 168 FLDMISPL-----DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI 222
FLD + L D+ D G PL AA G+ + + LVK+ + RN G
Sbjct: 82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
Query: 223 HCAARSGHRETVEYL 237
A G E V +
Sbjct: 142 DLARLYGRNEVVSLM 156
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 186 TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTG-VE 244
TPL +A + G+ +L+++ ++ + PIH AAR GH E V L++ G ++
Sbjct: 71 TPLFNACVSGSWDCVNLLLQHGASVQPESDLAS--PIHEAARRGHVECVNSLIAYGGNID 128
Query: 245 EEDSH 249
+ SH
Sbjct: 129 HKISH 133
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 186 TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTG-VE 244
TPL +A + G+ +L+++ ++ + PIH AAR GH E V L++ G ++
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQPESDLAS--PIHEAARRGHVECVNSLIAYGGNID 184
Query: 245 EEDSH 249
+ SH
Sbjct: 185 HKISH 189
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 180 TDTSGG----TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D GG TPL A G+ L+KY + P++ + G IH AA+ GH V
Sbjct: 68 VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVA 126
Query: 236 YLLS 239
YL++
Sbjct: 127 YLIA 130
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D G PL +A G+ + A++LVK+ + N+ + P+H AA G E +
Sbjct: 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAAKGKYEICK 125
Query: 236 YLL 238
LL
Sbjct: 126 LLL 128
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D G PL +A G+ + A++LVK+ + N+ + P+H AA G E +
Sbjct: 71 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAAKGKYEICK 129
Query: 236 YLL 238
LL
Sbjct: 130 LLL 132
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D+ D G PL +A G+ + A++LVK+ + N+ + P+H AA G E +
Sbjct: 69 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAAKGKYEICK 127
Query: 236 YLL 238
LL
Sbjct: 128 LLL 130
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
D +G T L A G+ + L N +N++G +H AA G+ + V+ LL+
Sbjct: 103 DKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA 161
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
D +G + AA G + L++ N+ N+ + G P+H AA+ GH VE+L+
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLE-NQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 241 T 241
T
Sbjct: 126 T 126
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 168 FLDMISPL-----DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI 222
FLD + L D+ D G PL AA G+ + + LVK+ + RN G
Sbjct: 82 FLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
Query: 223 HCAARSGHRETVEYL 237
A G E V +
Sbjct: 142 DLARLYGRNEVVSLM 156
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 191 AAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV 243
AA G T + L++ + P ++NR G +H A + G +T +YL SV V
Sbjct: 27 AARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEV 78
>pdb|1NNV|A Chain A, The Solution Structure Of Hi1450
Length = 110
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 69 MKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVDLGEHPQLRRALVRKDWKEVE 128
+ PA+ + ++ ER ++ V+T++DW E+ GV +D E+ ++ LV +
Sbjct: 32 LDPADILLFNLQFEERGGVEFVETADDWEEEI---GVLIDPEEYAEVWVGLVNE------ 82
Query: 129 RFISENPDTLYAKF 142
+ D ++AKF
Sbjct: 83 ---QDEMDDVFAKF 93
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 26/69 (37%)
Query: 171 MISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
+ S LD + D G T L A GN + K+ VK N L + + A
Sbjct: 82 LFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLND 141
Query: 231 RETVEYLLS 239
V Y LS
Sbjct: 142 VSIVSYFLS 150
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEE 246
P+ AA G +L + L ++R+ G+ P+ A GHR+ YL + G
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG 139
Query: 247 DSHEK 251
+H +
Sbjct: 140 SNHAR 144
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEE 246
P+ AA G +L + L ++R+ G+ P+ A GHR+ YL + G
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG 139
Query: 247 DSHEK 251
+H +
Sbjct: 140 SNHAR 144
>pdb|3CHJ|A Chain A, Crystal Structure Of Alpha-14 Giardin
pdb|3CHK|A Chain A, Calcium Bound Structure Of Alpha-14 Giardin
pdb|3CHL|A Chain A, Crystal Structure Of Alpha-14 Giardin With Magnesium Bound
Length = 337
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 36 SKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQV 90
SK+ + +V M K AQ +L+ G + T+ K D ++ +++HE ++I+Q+
Sbjct: 68 SKDFESLVLMLYKPRAQLLCELIRGATKGAGTDEKCLVDVLLTIETHEVREIRQL 122
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHR 231
+D+ E D +GGTPL A + K K+L++ + P + G + A G+R
Sbjct: 109 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYR 164
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRET 233
+D+ E D +GGTPL A + K K+L++ + P + G + A G+R
Sbjct: 91 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSV 148
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHR 231
+D+ E D +GGTPL A + K K+L++ + P + G + A G+R
Sbjct: 93 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYR 148
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
+G T L A G K L+ ++ N+++ G + CA GH+E LL+V
Sbjct: 182 AGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAV 238
>pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3L|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3M|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
pdb|2J3M|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
Length = 572
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 20 EMKPMNSSQPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEV 79
E++ M + L+D +NE VK D ++ VGKK A D ++EV
Sbjct: 491 EVEAMMTEAGYEVLVDDRNERAGVKFADADLIGCPIRITVGKK---------AVDGVVEV 541
Query: 80 KSHERQQIKQVKTSE 94
K ++ +V+ E
Sbjct: 542 KIKRTGEMLEVRKEE 556
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
L LE + G TPL A I + + ++L +L G+ P+H A + +
Sbjct: 149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 235 EYLL 238
E LL
Sbjct: 209 ELLL 212
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
L LE + G TPL A I + + ++L +L G+ P+H A + +
Sbjct: 149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 235 EYLL 238
E LL
Sbjct: 209 ELLL 212
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
D D +G TPL +A +IL++ N R G P+ AAR VE
Sbjct: 76 DANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVE 135
Query: 236 YLLSV 240
L++
Sbjct: 136 DLITA 140
>pdb|2WAD|A Chain A, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
pdb|2WAD|B Chain B, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
pdb|2WAD|C Chain C, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
Length = 680
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 6 PASSDLSKNDNKINEMKPMNS---SQPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKK 62
P+ L + N+++E + N+ S P+S+L +++E + + + F+Q ++ VG
Sbjct: 135 PSEKRLDSDGNRLSESELYNNAVDSVPTSQLNYTEDEKKEIYL----FSQLNA---VGNF 187
Query: 63 EDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVDLG 110
P ND + V + +++ + S W R+++ET + +G
Sbjct: 188 ATGTIATDPLNDSQVAVIASISKEMPGISISTSWDRKILETSLSSIVG 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,498,733
Number of Sequences: 62578
Number of extensions: 345112
Number of successful extensions: 986
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 746
Number of HSP's gapped (non-prelim): 196
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)