Query 039376
Match_columns 289
No_of_seqs 172 out of 2933
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 15:17:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_B Ankyrin repeat domain-c 100.0 1.4E-34 4.9E-39 244.8 14.0 210 30-273 14-230 (269)
2 4gpm_A Engineered protein OR26 100.0 3.6E-33 1.2E-37 219.9 19.8 151 87-245 10-163 (169)
3 1n11_A Ankyrin; clathrin, BAND 100.0 7.2E-33 2.5E-37 249.6 23.3 230 29-276 148-392 (437)
4 1yyh_A HN1;, notch 1, ankyrin 100.0 3.3E-33 1.1E-37 234.1 18.6 179 85-280 61-242 (253)
5 3b7b_A Euchromatic histone-lys 100.0 2E-32 6.9E-37 226.6 22.1 210 28-275 12-224 (237)
6 2f8y_A Notch homolog 1, transl 100.0 1.2E-32 3.9E-37 226.0 20.2 198 65-279 5-209 (223)
7 1wdy_A 2-5A-dependent ribonucl 100.0 5.5E-32 1.9E-36 229.2 23.3 234 31-280 9-272 (285)
8 1oy3_D Transcription factor in 100.0 3.6E-32 1.2E-36 230.5 21.4 210 28-273 10-270 (282)
9 1n11_A Ankyrin; clathrin, BAND 100.0 6E-32 2E-36 243.6 22.7 233 30-280 116-363 (437)
10 3ljn_A Hypothetical protein; a 100.0 6.5E-33 2.2E-37 244.2 16.0 212 30-279 23-262 (364)
11 3aji_A 26S proteasome non-ATPa 100.0 3.2E-32 1.1E-36 224.5 19.1 209 30-276 9-220 (231)
12 4gpm_A Engineered protein OR26 100.0 2.6E-32 8.9E-37 215.0 17.3 150 113-280 6-155 (169)
13 1k1a_A B-cell lymphoma 3-encod 100.0 3.4E-32 1.2E-36 225.5 16.9 214 28-280 10-235 (241)
14 2xai_A ASB-9, ankyrin repeat a 100.0 6.8E-32 2.3E-36 227.2 18.4 203 30-273 6-211 (261)
15 2dzn_A Probable 26S proteasome 100.0 8.2E-32 2.8E-36 221.5 16.9 206 30-273 5-220 (228)
16 1oy3_D Transcription factor in 100.0 1.4E-31 4.8E-36 226.8 17.8 178 85-280 13-244 (282)
17 4g8k_A 2-5A-dependent ribonucl 100.0 1.4E-30 4.9E-35 226.9 23.2 231 31-280 29-320 (337)
18 3d9h_A CDNA FLJ77766, highly s 100.0 7.8E-31 2.7E-35 223.7 20.7 204 27-271 59-265 (285)
19 2rfa_A Transient receptor pote 100.0 5.7E-31 2E-35 217.3 19.0 183 85-279 7-215 (232)
20 3utm_A Tankyrase-1; tankyrase, 100.0 1.2E-30 4E-35 227.7 21.6 225 32-270 29-322 (351)
21 3hra_A Ankyrin repeat family p 100.0 7.7E-31 2.6E-35 211.7 18.8 177 85-278 9-195 (201)
22 3b7b_A Euchromatic histone-lys 100.0 1.8E-30 6.2E-35 214.8 21.2 176 85-278 15-194 (237)
23 1yyh_A HN1;, notch 1, ankyrin 100.0 3E-31 1E-35 222.2 15.7 172 91-280 33-209 (253)
24 2dzn_A Probable 26S proteasome 100.0 2E-30 6.9E-35 213.2 19.4 178 85-280 6-193 (228)
25 3kea_A K1L; tropism, ANK repea 100.0 2.4E-31 8.4E-36 226.8 14.0 175 86-279 36-213 (285)
26 2fo1_E LIN-12 protein; beta-ba 100.0 6.2E-31 2.1E-35 232.6 16.8 206 56-279 130-364 (373)
27 4g8k_A 2-5A-dependent ribonucl 100.0 5.8E-30 2E-34 223.0 22.6 210 55-280 29-292 (337)
28 1wdy_A 2-5A-dependent ribonucl 100.0 4.9E-30 1.7E-34 217.2 21.5 207 56-280 10-238 (285)
29 2xai_A ASB-9, ankyrin repeat a 100.0 2.4E-30 8.2E-35 217.8 19.2 175 85-279 7-184 (261)
30 3aji_A 26S proteasome non-ATPa 100.0 3.8E-30 1.3E-34 212.1 19.2 176 85-278 10-189 (231)
31 3utm_A Tankyrase-1; tankyrase, 100.0 6.4E-30 2.2E-34 223.0 21.6 207 56-280 29-299 (351)
32 3eu9_A Huntingtin-interacting 100.0 3.4E-30 1.2E-34 212.9 18.4 211 30-279 12-228 (240)
33 1s70_B 130 kDa myosin-binding 100.0 4E-30 1.4E-34 220.1 18.8 194 60-270 49-274 (299)
34 1k1a_A B-cell lymphoma 3-encod 100.0 1E-29 3.5E-34 210.6 20.5 176 85-278 13-200 (241)
35 3d9h_A CDNA FLJ77766, highly s 100.0 1E-29 3.4E-34 216.8 19.9 175 85-279 63-240 (285)
36 1sw6_A Regulatory protein SWI6 100.0 2.3E-31 7.9E-36 231.3 9.6 217 38-272 58-327 (327)
37 2f8y_A Notch homolog 1, transl 100.0 7E-30 2.4E-34 209.4 17.5 189 28-245 26-218 (223)
38 2rfm_A Putative ankyrin repeat 100.0 2.8E-30 9.7E-35 207.2 14.7 153 108-278 32-184 (192)
39 3v31_A Ankyrin repeat family A 100.0 5.8E-30 2E-34 200.8 15.9 150 110-277 2-151 (167)
40 4b93_B Ankyrin repeat domain-c 100.0 3.8E-30 1.3E-34 217.7 14.4 178 85-280 15-204 (269)
41 2etb_A Transient receptor pote 100.0 2E-30 6.7E-35 217.4 12.4 177 86-279 7-239 (256)
42 4hbd_A KN motif and ankyrin re 100.0 3.7E-30 1.3E-34 218.5 13.6 181 83-280 78-269 (276)
43 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.1E-29 7.3E-34 198.1 16.3 151 109-277 12-162 (169)
44 3v30_A DNA-binding protein rfx 100.0 2E-29 6.7E-34 198.7 15.7 152 86-245 7-162 (172)
45 1ikn_D Protein (I-kappa-B-alph 100.0 7.3E-31 2.5E-35 217.4 7.8 182 55-244 12-210 (236)
46 1awc_B Protein (GA binding pro 100.0 2.4E-29 8.4E-34 194.5 15.2 147 112-277 3-149 (153)
47 3v30_A DNA-binding protein rfx 100.0 3.7E-29 1.3E-33 197.1 16.4 155 111-272 2-158 (172)
48 1ihb_A P18-INK4C(INK6), cyclin 100.0 4.8E-29 1.6E-33 194.4 16.7 151 85-243 9-162 (162)
49 3hra_A Ankyrin repeat family p 100.0 1.7E-28 5.8E-33 197.9 20.2 184 30-241 8-201 (201)
50 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.5E-28 8.4E-33 192.0 19.7 149 85-241 18-169 (169)
51 3jxi_A Vanilloid receptor-rela 100.0 6.3E-30 2.1E-34 214.7 10.7 183 86-279 10-243 (260)
52 3twr_A Tankyrase-2; ankyrin re 100.0 9.6E-30 3.3E-34 199.1 10.9 151 108-276 5-155 (165)
53 3kea_A K1L; tropism, ANK repea 100.0 4.5E-29 1.5E-33 212.8 15.6 203 56-272 36-244 (285)
54 3ljn_A Hypothetical protein; a 100.0 2.2E-29 7.5E-34 221.7 13.8 214 28-272 54-300 (364)
55 2rfa_A Transient receptor pote 100.0 1E-28 3.5E-33 203.7 16.5 150 110-276 2-169 (232)
56 1ihb_A P18-INK4C(INK6), cyclin 100.0 5.2E-29 1.8E-33 194.2 14.0 151 110-279 4-155 (162)
57 1bd8_A P19INK4D CDK4/6 inhibit 100.0 8.4E-29 2.9E-33 191.8 14.6 149 111-278 2-150 (156)
58 1ikn_D Protein (I-kappa-B-alph 100.0 3E-29 1E-33 207.6 12.8 172 85-274 12-197 (236)
59 2fo1_E LIN-12 protein; beta-ba 100.0 2.4E-29 8.1E-34 222.5 12.8 196 65-280 107-332 (373)
60 2pnn_A Transient receptor pote 100.0 2.9E-29 1E-33 212.3 12.5 183 86-279 18-251 (273)
61 1awc_B Protein (GA binding pro 100.0 1E-27 3.6E-32 185.3 18.6 144 86-237 7-152 (153)
62 3f6q_A Integrin-linked protein 100.0 6.8E-29 2.3E-33 197.0 12.1 152 86-245 10-165 (179)
63 2pnn_A Transient receptor pote 100.0 3.7E-29 1.3E-33 211.7 11.1 197 28-245 14-261 (273)
64 3v31_A Ankyrin repeat family A 100.0 6.4E-28 2.2E-32 189.1 17.4 153 85-245 7-162 (167)
65 3eu9_A Huntingtin-interacting 100.0 1.6E-27 5.4E-32 196.9 19.0 177 85-278 13-194 (240)
66 2vge_A RELA-associated inhibit 100.0 7E-30 2.4E-34 211.0 4.5 173 98-278 2-205 (229)
67 2etb_A Transient receptor pote 100.0 9.6E-29 3.3E-33 207.1 10.9 153 85-245 47-248 (256)
68 2rfm_A Putative ankyrin repeat 100.0 8.8E-28 3E-32 192.7 16.0 149 85-241 39-190 (192)
69 3f6q_A Integrin-linked protein 100.0 1.6E-27 5.5E-32 189.1 16.1 157 110-273 4-162 (179)
70 1bi7_B P16INK4A, MTS1, multipl 100.0 4E-28 1.4E-32 188.4 12.0 142 108-268 9-151 (156)
71 1s70_B 130 kDa myosin-binding 100.0 1.8E-27 6.1E-32 203.5 16.6 176 86-278 45-249 (299)
72 1d9s_A Cyclin-dependent kinase 100.0 9.1E-28 3.1E-32 182.1 13.0 127 108-243 9-136 (136)
73 3twr_A Tankyrase-2; ankyrin re 99.9 2.6E-27 8.9E-32 185.2 14.3 149 85-242 12-164 (165)
74 3jxi_A Vanilloid receptor-rela 99.9 2.4E-28 8.2E-33 205.0 8.6 149 90-245 58-252 (260)
75 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.9E-26 9.8E-31 177.5 17.8 145 86-240 7-155 (156)
76 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.4E-28 1.2E-32 202.0 6.7 179 86-273 10-193 (239)
77 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.6E-26 8.8E-31 170.9 15.8 126 110-243 1-126 (126)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2E-27 6.8E-32 197.4 10.6 151 108-277 2-155 (239)
79 2jab_A H10-2-G3; HER2, darpin, 99.9 3.1E-26 1.1E-30 173.5 15.3 126 108-241 11-136 (136)
80 4hbd_A KN motif and ankyrin re 99.9 3.1E-26 1.1E-30 194.3 13.6 149 86-242 116-274 (276)
81 1sw6_A Regulatory protein SWI6 99.9 2.5E-27 8.6E-32 205.9 5.5 206 65-280 33-302 (327)
82 3t8k_A Uncharacterized protein 99.9 1.5E-26 5.2E-31 184.8 6.7 148 112-275 7-168 (186)
83 3c5r_A BARD-1, BRCA1-associate 99.9 7E-26 2.4E-30 171.7 8.7 128 108-243 7-134 (137)
84 3t8k_A Uncharacterized protein 99.9 4.1E-26 1.4E-30 182.3 7.5 156 85-245 10-181 (186)
85 1d9s_A Cyclin-dependent kinase 99.9 1.9E-25 6.5E-30 169.2 9.5 127 135-279 2-129 (136)
86 3ehr_A Osteoclast-stimulating 99.9 6E-25 2.1E-29 180.2 9.5 131 108-245 70-200 (222)
87 3c5r_A BARD-1, BRCA1-associate 99.9 6.3E-25 2.2E-29 166.4 8.3 124 136-277 2-125 (137)
88 3aaa_C Myotrophin, protein V-1 99.9 3.5E-24 1.2E-28 159.3 11.5 117 108-232 4-120 (123)
89 2b0o_E UPLC1; arfgap, structur 99.9 2.5E-24 8.6E-29 184.7 11.8 141 110-274 150-299 (301)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 6.6E-24 2.2E-28 160.7 11.8 120 143-278 11-130 (136)
91 3aaa_C Myotrophin, protein V-1 99.9 2.9E-23 1E-27 154.3 12.3 114 143-272 4-117 (123)
92 1n0r_A 4ANK, 4 ankyrin repeats 99.9 4.1E-23 1.4E-27 153.4 12.9 119 145-279 1-119 (126)
93 3deo_A Signal recognition part 99.9 4.8E-23 1.6E-27 163.9 13.1 122 108-238 41-163 (183)
94 2aja_A Ankyrin repeat family p 99.9 4.1E-26 1.4E-30 201.2 -5.7 147 83-245 94-252 (376)
95 2vge_A RELA-associated inhibit 99.9 1.2E-24 4.2E-29 179.5 2.6 165 86-261 26-199 (229)
96 3ui2_A Signal recognition part 99.9 3.6E-23 1.2E-27 172.3 11.3 127 108-243 42-185 (244)
97 1bi7_B P16INK4A, MTS1, multipl 99.9 4E-23 1.4E-27 160.1 9.4 132 84-224 15-150 (156)
98 1n0q_A 3ANK, 3 ankyrin repeats 99.9 3.1E-22 1.1E-26 141.2 12.5 93 145-243 1-93 (93)
99 3jue_A Arfgap with coiled-coil 99.9 3.8E-22 1.3E-26 175.3 14.9 148 110-272 198-348 (368)
100 3lvq_E ARF-GAP with SH3 domain 99.9 4.1E-22 1.4E-26 182.4 15.4 128 111-245 132-267 (497)
101 1dcq_A PYK2-associated protein 99.9 8.2E-22 2.8E-26 167.2 16.0 126 112-245 131-265 (278)
102 2aja_A Ankyrin repeat family p 99.9 3.2E-24 1.1E-28 189.1 -0.1 157 91-277 76-241 (376)
103 3ehr_A Osteoclast-stimulating 99.9 1.3E-22 4.5E-27 166.1 7.6 120 143-278 70-190 (222)
104 3deo_A Signal recognition part 99.9 1E-21 3.5E-26 156.2 11.9 116 143-275 41-157 (183)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.9 3.3E-21 1.1E-25 135.9 12.0 93 110-209 1-93 (93)
106 2b0o_E UPLC1; arfgap, structur 99.9 8.9E-22 3E-26 168.8 10.6 133 85-231 155-299 (301)
107 2l6b_A NR1C; ankyrin, consensu 99.9 8.9E-22 3E-26 144.3 8.9 107 143-265 6-112 (115)
108 3ui2_A Signal recognition part 99.8 5.4E-21 1.8E-25 159.1 11.9 113 143-272 42-155 (244)
109 1dcq_A PYK2-associated protein 99.8 1.5E-19 5.3E-24 153.1 17.1 154 108-278 63-255 (278)
110 2l6b_A NR1C; ankyrin, consensu 99.8 5.9E-21 2E-25 139.9 6.8 107 108-222 6-112 (115)
111 3lvq_E ARF-GAP with SH3 domain 99.8 1.4E-19 4.7E-24 165.7 14.0 128 85-226 136-275 (497)
112 3jue_A Arfgap with coiled-coil 99.8 8E-20 2.7E-24 160.5 11.9 122 143-280 196-320 (368)
113 2zgd_A 3 repeat synthetic anky 99.8 2.1E-18 7.1E-23 125.4 11.0 89 143-237 21-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 6.5E-18 2.2E-22 122.8 10.6 90 107-203 20-109 (110)
115 4g26_A Pentatricopeptide repea 39.4 54 0.0018 29.2 6.2 11 117-127 114-124 (501)
116 3zrh_A Ubiquitin thioesterase 30.6 1.1E+02 0.0037 26.7 6.1 45 88-132 29-90 (454)
117 1gp8_A Protein (scaffolding pr 23.8 60 0.0021 17.6 2.2 17 222-238 17-33 (40)
No 1
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=244.80 Aligned_cols=210 Identities=14% Similarity=0.106 Sum_probs=164.2
Q ss_pred hhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhcccccc---HHHhcC-CHHHHHHHHHcCC
Q 039376 30 SSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKT-SEDWFREMVETGV 105 (289)
Q Consensus 30 ~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~Ll~~g~ 105 (289)
....+...|+.++|++|++.+......... .++..+..+.+ .+...+ ...+++.|++.|+
T Consensus 14 ~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~----------------~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga 77 (269)
T 4b93_B 14 KLLRAVADGDLEMVRYLLEWTEEDLEDAED----------------TVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL 77 (269)
T ss_dssp HHHHHHHTTCHHHHHHHHTCC--------------------------------------------------------CCC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCcccccccc----------------cccccCccCCCHHHHHHHhCCHHHHHHHHHHCCC
Confidence 344566789999999999988654321100 00111111111 122222 2347889999999
Q ss_pred cC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCC
Q 039376 106 KV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDT 182 (289)
Q Consensus 106 ~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~ 182 (289)
++ |..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||+|+|+..++ .+++++|++. |++++.+|.
T Consensus 78 dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~~a~~~~~-~~~g~t~l~~a~~~~~---~~~~~~Ll~~--g~~~n~~d~ 150 (269)
T 4b93_B 78 GVNVTSQDGSSPLHVAALHGRADLIPLLLK-HGANAGAR-NADQAVPLHLACQQGH---FQVVKCLLDS--NAKPNKKDL 150 (269)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCTTHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHT--TCCSCCCCT
T ss_pred CCCCcCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCcCcc-CCCCCCccccccccCh---HHHHHHHHHC--CCCCCCCCC
Confidence 87 5689999999999999999999998 68999998 9999999999999999 9999999999 999999999
Q ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccc
Q 039376 183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGL 262 (289)
Q Consensus 183 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~ 262 (289)
.|+||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++ +.+.+|+
T Consensus 151 ~g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~----------~~d~~G~ 219 (269)
T 4b93_B 151 SGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ----------VLNKRQR 219 (269)
T ss_dssp TCCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC----------CCCTTSC
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC----------CcCCCCC
Confidence 9999999999999999999999999996 9999999999999999999999999999999999 9999999
Q ss_pred hHHHHHHHhCC
Q 039376 263 KLLEILIEFNF 273 (289)
Q Consensus 263 ~~l~~a~~~g~ 273 (289)
|||++|+.+|.
T Consensus 220 TpL~~A~~~~~ 230 (269)
T 4b93_B 220 TAVDCAEQNSK 230 (269)
T ss_dssp CSGGGSCTTCH
T ss_pred CHHHHHHhCCc
Confidence 99999988775
No 2
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.6e-33 Score=219.89 Aligned_cols=151 Identities=24% Similarity=0.335 Sum_probs=140.6
Q ss_pred HHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHH
Q 039376 87 IKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHR 163 (289)
Q Consensus 87 ~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~ 163 (289)
.|+..|+.++++.|+++|+++ |..|.||||+|+..++.+++++|++ .+++++.+ +..|+||||+|+..|+ .+
T Consensus 10 ~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~-d~~g~TpLh~A~~~g~---~~ 84 (169)
T 4gpm_A 10 EAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAK-DSDGRTPLHHAAENGH---KE 84 (169)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---HH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhhh-ccCCCCHHHHHHHcCC---HH
Confidence 477889999999999999987 5689999999999999999999998 68999999 9999999999999999 99
Q ss_pred HHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 039376 164 LLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV 243 (289)
Q Consensus 164 ~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 243 (289)
++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++||+
T Consensus 85 ~v~~Ll~~--gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 85 VVKLLISK--GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred HHHHHHHC--cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 99999999 9999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred cc
Q 039376 244 EE 245 (289)
Q Consensus 244 ~~ 245 (289)
++
T Consensus 162 ie 163 (169)
T 4gpm_A 162 LE 163 (169)
T ss_dssp --
T ss_pred cC
Confidence 87
No 3
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.2e-33 Score=249.62 Aligned_cols=230 Identities=18% Similarity=0.208 Sum_probs=202.6
Q ss_pred chhhhhhcCCchHHHHHHHhccCCCc---------hhhhhcCChhhhhhcccCCCCccchhcccccc---HHHhcCCHHH
Q 039376 29 PSSRLLDSKNEDEIVKMKQKDFAQPS---------SKLVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTSEDW 96 (289)
Q Consensus 29 ~~~~~~~~~~~~~iv~~L~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~ 96 (289)
.....+...|..+++++|++.+.++. ...++..+..++++++...+......+..+.+ .++..++.++
T Consensus 148 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 227 (437)
T 1n11_A 148 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV 227 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 34556677888899999998875432 35566677788888888888777666555444 4778899999
Q ss_pred HHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccC
Q 039376 97 FREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMIS 173 (289)
Q Consensus 97 ~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~ 173 (289)
+++|++.|+++ +..|.||||+|++.|+.+++++|++ .+++++.. +..|.||||+|+..|+ .+++++|++.
T Consensus 228 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~-- 300 (437)
T 1n11_A 228 ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLG-NKSGLTPLHLVAQEGH---VPVADVLIKH-- 300 (437)
T ss_dssp HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHH--
T ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh-cCCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHhC--
Confidence 99999999876 4578999999999999999999998 58888888 8999999999999999 9999999999
Q ss_pred CCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC
Q 039376 174 PLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYS 253 (289)
Q Consensus 174 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~ 253 (289)
|++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++
T Consensus 301 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~-------- 371 (437)
T 1n11_A 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN-------- 371 (437)
T ss_dssp TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--------
T ss_pred CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCC--------
Confidence 9999999999999999999999999999999999995 9999999999999999999999999999999999
Q ss_pred CcccccccchHHHHHHHhCCCCc
Q 039376 254 NPFAGECGLKLLEILIEFNFLGQ 276 (289)
Q Consensus 254 ~~~~~~~g~~~l~~a~~~g~~~~ 276 (289)
..+.+|.||+++|...|+.++
T Consensus 372 --~~~~~g~t~l~~A~~~g~~~~ 392 (437)
T 1n11_A 372 --EVSSDGTTPLAIAKRLGYISV 392 (437)
T ss_dssp --CCCSSSCCHHHHHHHTTCHHH
T ss_pred --CCCCCCCCHHHHHHHcCcHHH
Confidence 999999999999999998764
No 4
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.3e-33 Score=234.14 Aligned_cols=179 Identities=21% Similarity=0.208 Sum_probs=167.5
Q ss_pred ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376 85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA 161 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~ 161 (289)
.+.++..++.+++++|+++|+++ +..|.||||+|+..|+.+++++|++.+..+++.+ +..|.||||+|+..|+
T Consensus 61 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~--- 136 (253)
T 1yyh_A 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR-MHDGTTPLILAARLAV--- 136 (253)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCC-CTTCCCHHHHHHHHTC---
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc-CCCCCcHHHHHHHcCh---
Confidence 45688899999999999999987 5689999999999999999999999655588888 8999999999999999
Q ss_pred HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376 162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT 241 (289)
Q Consensus 162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 241 (289)
.+++++|++. |++++.++..|+||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|
T Consensus 137 ~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g 213 (253)
T 1yyh_A 137 EGMLEDLINS--HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHF 213 (253)
T ss_dssp SSHHHHHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999 9999999999999999999999999999999999995 999999999999999999999999999999
Q ss_pred CCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376 242 GVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN 280 (289)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~ 280 (289)
++++ ..+..|.||+++|++.|+.++....
T Consensus 214 a~~~----------~~d~~g~tpl~~A~~~g~~~i~~~l 242 (253)
T 1yyh_A 214 ANRD----------ITDHMDRLPRDIAQERMHHDIVRLL 242 (253)
T ss_dssp CCTT----------CCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred CCcc----------ccccCCCCHHHHHHHcCCHHHHHHH
Confidence 9999 9999999999999999999865443
No 5
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2e-32 Score=226.62 Aligned_cols=210 Identities=17% Similarity=0.126 Sum_probs=186.3
Q ss_pred CchhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcC
Q 039376 28 QPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKV 107 (289)
Q Consensus 28 ~~~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~ 107 (289)
......+...|..+++++|++.+.+..... . ......+.++..++.+++++|+++|+++
T Consensus 12 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------~-------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 70 (237)
T 3b7b_A 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCS--------------E-------DQRTPLMEAAENNHLEAVKYLIKAGALV 70 (237)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCCC--------------T-------TCCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCcCccC--------------C-------CCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 345667778899999999999886543221 0 1122345678889999999999999876
Q ss_pred ---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCC
Q 039376 108 ---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSG 184 (289)
Q Consensus 108 ---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g 184 (289)
+..|.||||+|+..|+.+++++|++.+..+++.. +..|.||||+|+..++ .+++++|++. |++++.++..|
T Consensus 71 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~~~~g 144 (237)
T 3b7b_A 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ-DDGGWTPMIWATEYKH---VDLVKLLLSK--GSDINIRDNEE 144 (237)
T ss_dssp CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTS
T ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccC-CCCCCCHHHHHHHcCC---HHHHHHHHHC--CCCCCccCCCC
Confidence 5689999999999999999999999655888888 8999999999999999 9999999999 99999999999
Q ss_pred CCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchH
Q 039376 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKL 264 (289)
Q Consensus 185 ~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~ 264 (289)
.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..++.+++++|+++|++++ ..+..|.||
T Consensus 145 ~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~----------~~d~~g~t~ 213 (237)
T 3b7b_A 145 NICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT----------LKNKEGETP 213 (237)
T ss_dssp CCHHHHHHHHCCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT----------CCCTTSCCH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC----------ccCCCCCCH
Confidence 99999999999999999999999995 9999999999999999999999999999999999 999999999
Q ss_pred HHHHHHhCCCC
Q 039376 265 LEILIEFNFLG 275 (289)
Q Consensus 265 l~~a~~~g~~~ 275 (289)
+++|+.+|...
T Consensus 214 l~~A~~~~~~~ 224 (237)
T 3b7b_A 214 LQCASLNSQVW 224 (237)
T ss_dssp HHHSCTTCHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888654
No 6
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.2e-32 Score=226.01 Aligned_cols=198 Identities=19% Similarity=0.182 Sum_probs=175.3
Q ss_pred hhhhcccCCCCccchh-cccc---ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCC
Q 039376 65 EITEMKPANDPIIEVK-SHER---QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDT 137 (289)
Q Consensus 65 ~~~~~l~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~ 137 (289)
++.+++...++.++.. +..+ .+.|+..++.+++++|+++|+++ +..|.||||+|+..|+.+++++|++....+
T Consensus 5 ~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~ 84 (223)
T 2f8y_A 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84 (223)
T ss_dssp CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSC
T ss_pred HHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 4445555555555433 2333 34588899999999999999987 568999999999999999999999965558
Q ss_pred cccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCC
Q 039376 138 LYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRI 217 (289)
Q Consensus 138 ~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~ 217 (289)
++.+ +..|.||||+|+..++ .+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..
T Consensus 85 ~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~ 157 (223)
T 2f8y_A 85 LDAR-MHDGTTPLILAARLAV---EGMLEDLINS--HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNR 157 (223)
T ss_dssp TTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred cccC-CCCCCcHHHHHHHhCc---HHHHHHHHHc--CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence 8888 8999999999999999 9999999999 9999999999999999999999999999999999995 999999
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCcccc
Q 039376 218 GQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTC 279 (289)
Q Consensus 218 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~ 279 (289)
|+||||+|+..|+.+++++|+++|++++ ..+..|.||+++|+..|+.++...
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~l~~A~~~~~~~i~~~ 209 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLDHFANRD----------ITDHMDRLPRDIAQERMHHDIVRL 209 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcCCCCc----------cccccCCCHHHHHHHhcchHHHHH
Confidence 9999999999999999999999999999 999999999999999999885443
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5.5e-32 Score=229.22 Aligned_cols=234 Identities=15% Similarity=0.148 Sum_probs=204.7
Q ss_pred hhhhhcCCchHHHHHHHhccCCCc----------hhhhhcCChhhhhhcccCCCCccchhcccccc---HHHhcCCHHHH
Q 039376 31 SRLLDSKNEDEIVKMKQKDFAQPS----------SKLVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTSEDWF 97 (289)
Q Consensus 31 ~~~~~~~~~~~iv~~L~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 97 (289)
...+...|..++|++|++.+.+.. ...+...+..++++++...+..++..+..+.+ .++..++.+++
T Consensus 9 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 88 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLL 88 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHH
Confidence 445667899999999999875432 35667778888999999888888777666555 47788999999
Q ss_pred HHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCccccc---------CCCCChHHHHHHhcCCchHHHHH
Q 039376 98 REMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKF---------TESCGTLFHSMANINEDEAHRLL 165 (289)
Q Consensus 98 ~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~---------~~~~~t~Lh~A~~~g~~~~~~~v 165 (289)
++|+++|+++ +..|.||||+|+..|+.+++++|++ .+++++... +..|.||||+|+..|+ .+++
T Consensus 89 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v 164 (285)
T 1wdy_A 89 KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVL 164 (285)
T ss_dssp HHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC---HHHH
T ss_pred HHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHH-hCCCcccccccHHHHHhhccCCCcHHHHHHHcCC---HHHH
Confidence 9999999987 5689999999999999999999999 577776542 4668999999999999 9999
Q ss_pred HHHHhccCCCCccccCCCCCCHHHHHHHhCC----HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-c
Q 039376 166 DEFLDMISPLDLEETDTSGGTPLTSAAIVGN----TKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS-V 240 (289)
Q Consensus 166 ~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~ 240 (289)
++|++.. |++++.++..|.||||+|+..++ .+++++|+++|+++ +.++..|+||||+|+..|+.+++++|++ +
T Consensus 165 ~~Ll~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 242 (285)
T 1wdy_A 165 KILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQE 242 (285)
T ss_dssp HHHHHTS-CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred HHHHHhc-CCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcc
Confidence 9999865 89999999999999999999999 89999999999995 9999999999999999999999999998 8
Q ss_pred CCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376 241 TGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN 280 (289)
Q Consensus 241 g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~ 280 (289)
|++++ ..+..|.|||++|+..|+.++...+
T Consensus 243 g~~~~----------~~~~~g~t~l~~A~~~~~~~i~~~L 272 (285)
T 1wdy_A 243 HIEIN----------DTDSDGKTALLLAVELKLKKIAELL 272 (285)
T ss_dssp SCCTT----------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCcc----------ccCCCCCcHHHHHHHcCcHHHHHHH
Confidence 99999 9999999999999999998854433
No 8
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.6e-32 Score=230.48 Aligned_cols=210 Identities=14% Similarity=0.068 Sum_probs=168.2
Q ss_pred CchhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcC
Q 039376 28 QPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKV 107 (289)
Q Consensus 28 ~~~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~ 107 (289)
.....++...|+.++|++|++.+..+...... . .......+.|+..++.+++++|+++|+++
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-----------~-------~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 71 (282)
T 1oy3_D 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-----------N-------DLGQTALHLAAILGEASTVEKLYAAGAGV 71 (282)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCC-----------C-------TTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCccccccc-----------C-------CCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 34567778899999999999988765322200 0 01123345688899999999999999987
Q ss_pred ---CCCCchHHHHHHHcCCHHHHHHHHhhCCCC-----------------------------------------------
Q 039376 108 ---DLGEHPQLRRALVRKDWKEVERFISENPDT----------------------------------------------- 137 (289)
Q Consensus 108 ---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~----------------------------------------------- 137 (289)
+..|.||||+|++.|+.+++++|++. ++.
T Consensus 72 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (282)
T 1oy3_D 72 LVAERGGHTALHLACRVRAHTCACVLLQP-RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ 150 (282)
T ss_dssp SCCCTTSCCHHHHHTTTTCHHHHHHHSSS-CCSSCCCC-----------------------------------CCCGGGG
T ss_pred CCCCCCCCCHHHHHHHcCCcchhHhhhcc-CCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhc
Confidence 56899999999999999999999984 332
Q ss_pred cccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCC-CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC
Q 039376 138 LYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDT-SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNR 216 (289)
Q Consensus 138 ~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~ 216 (289)
++.+ +..|.||||+|+..|+ .+++++|++. |++++.++. .|+||||+|+..|+.+++++|+++|+++ +.++.
T Consensus 151 ~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~ 223 (282)
T 1oy3_D 151 LEAE-NYDGHTPLHVAVIHKD---AEMVRLLRDA--GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMY 223 (282)
T ss_dssp TTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred CCCc-CCCCcCHHHHHHHcCC---HHHHHHHHHc--CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccc
Confidence 5556 7889999999999999 9999999999 999999985 4999999999999999999999999995 99999
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCC
Q 039376 217 IGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNF 273 (289)
Q Consensus 217 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~ 273 (289)
.|+||||+|+..|+.+++++|+++|++++ ..+..|.||+++|.....
T Consensus 224 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 224 GGRTPLGSALLRPNPILARLLRAHGAPEP----------EDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp TSCCHHHHHHTSSCHHHHHHHHHTTCCCC----------CCC---------------
T ss_pred CCCCHHHHHHHcCCcHHHHHHHHcCCCcC----------cCCCcccccccccCCccc
Confidence 99999999999999999999999999999 999999999999987553
No 9
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6e-32 Score=243.60 Aligned_cols=233 Identities=15% Similarity=0.133 Sum_probs=193.6
Q ss_pred hhhhhhcCCchHHHHHHHhccCCC---------chhhhhcCChhhhhhcccCCCCccchhcccccc---HHHhcCCHHHH
Q 039376 30 SSRLLDSKNEDEIVKMKQKDFAQP---------SSKLVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTSEDWF 97 (289)
Q Consensus 30 ~~~~~~~~~~~~iv~~L~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 97 (289)
...++...|+.+++++|++.+... ....+...+..++++++...+...+..+..+.+ .++..++.+++
T Consensus 116 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 195 (437)
T 1n11_A 116 PLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 195 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 344455566666666666665332 234455566677777777777777666555544 47778888899
Q ss_pred HHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCC
Q 039376 98 REMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP 174 (289)
Q Consensus 98 ~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g 174 (289)
++|+++|+++ +..|.||||+|+..|+.+++++|++ .+.+++.. +..|.||||+|+..|+ .+++++|++. +
T Consensus 196 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~--~ 268 (437)
T 1n11_A 196 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAE-SVQGVTPLHLAAQEGH---AEMVALLLSK--Q 268 (437)
T ss_dssp HHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHTT--T
T ss_pred HHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHCCC---HHHHHHHHhc--C
Confidence 9998888876 4478899999999999999999888 57888888 8899999999999999 9999999998 8
Q ss_pred CCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCC
Q 039376 175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSN 254 (289)
Q Consensus 175 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~ 254 (289)
++++..+..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++
T Consensus 269 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--------- 338 (437)
T 1n11_A 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN--------- 338 (437)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTT---------
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCC---------
Confidence 999999999999999999999999999999999996 9999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHhCCCCccccc
Q 039376 255 PFAGECGLKLLEILIEFNFLGQYTCN 280 (289)
Q Consensus 255 ~~~~~~g~~~l~~a~~~g~~~~~~~~ 280 (289)
..+..|.||||+|+..|+.++...+
T Consensus 339 -~~~~~g~t~L~~A~~~g~~~iv~~L 363 (437)
T 1n11_A 339 -AKTKLGYSPLHQAAQQGHTDIVTLL 363 (437)
T ss_dssp -CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred -CCCCCCCCHHHHHHHCChHHHHHHH
Confidence 9999999999999999988854443
No 10
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=6.5e-33 Score=244.22 Aligned_cols=212 Identities=11% Similarity=0.064 Sum_probs=185.9
Q ss_pred hhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcCCC
Q 039376 30 SSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVDL 109 (289)
Q Consensus 30 ~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~ 109 (289)
...++...|+.++|++|++.+.++.... .......+.|+..++.+++++|+++|++++.
T Consensus 23 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d---------------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 81 (364)
T 3ljn_A 23 KIHVAARKGQTDEVRRLIETGVSPTIQN---------------------RFGCTALHLACKFGCVDTAKYLASVGEVHSL 81 (364)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCC---------------------TTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccC---------------------CCCCcHHHHHHHcCCHHHHHHHHHCCCCccc
Confidence 4566677899999999999886653222 0112334568889999999999999998865
Q ss_pred -CCchHHHHHHHcCCHHHHHHHHhhC---CCCccc-----------------ccCCCCChHHHHHHhcC--CchHHHHHH
Q 039376 110 -GEHPQLRRALVRKDWKEVERFISEN---PDTLYA-----------------KFTESCGTLFHSMANIN--EDEAHRLLD 166 (289)
Q Consensus 110 -~g~t~Lh~A~~~g~~~~v~~ll~~~---~~~~~~-----------------~~~~~~~t~Lh~A~~~g--~~~~~~~v~ 166 (289)
.|.||||+|+..|+.+++++|++.. +.+++. + +..|.||||+|+..| + .++++
T Consensus 82 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~---~~~v~ 157 (364)
T 3ljn_A 82 WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVK-HCKGQTALHWCVGLGPEY---LEMIK 157 (364)
T ss_dssp BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEE-EESCCCHHHHHHHSCGGG---HHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccC-CCCCCCHHHHHHHcCCch---HHHHH
Confidence 8999999999999999999999841 555555 6 788999999999999 9 99999
Q ss_pred HHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376 167 EFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKN-----LPNMRNRIGQCPIHCAARSGHRETVEYLLSVT 241 (289)
Q Consensus 167 ~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 241 (289)
+|++. |++++.++..|.||||+|+..|+.+++++|+++|++ + +..+..|+||||+|+..|+.+++++|+++|
T Consensus 158 ~Ll~~--ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 234 (364)
T 3ljn_A 158 ILVQL--GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILINWEDVAMRFVEMG 234 (364)
T ss_dssp HHHHH--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT-TCCCTTCCCTTHHHHTTTCHHHHHHHHTTT
T ss_pred HHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 99999 999999999999999999999999999999999988 7 899999999999999999999999999999
Q ss_pred CCcccccccCCCCcccccccchHHHHHHHhCCCCcccc
Q 039376 242 GVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTC 279 (289)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~ 279 (289)
++++ ..+..|.|||++|+..|+.++...
T Consensus 235 ad~~----------~~d~~g~tpL~~A~~~g~~~~v~~ 262 (364)
T 3ljn_A 235 IDVN----------MEDNEHTVPLYLSVRAAMVLLTKE 262 (364)
T ss_dssp CCTT----------CCCTTSCCHHHHHHHTCCHHHHHH
T ss_pred CCCC----------CCCCCCCCHHHHHHHhChHHHHHH
Confidence 9999 999999999999999999875443
No 11
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.2e-32 Score=224.53 Aligned_cols=209 Identities=17% Similarity=0.126 Sum_probs=182.7
Q ss_pred hhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcC--
Q 039376 30 SSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKV-- 107 (289)
Q Consensus 30 ~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~-- 107 (289)
....+...|..++++++++.+...... .. .......+.++..++.+++++|+++|+++
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~-------------~~-------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 68 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATR-------------TD-------QDSRTALHWACSAGHTEIVEFLLQLGVPVND 68 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGC-------------CC-------TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhc-------------CC-------CCCCCHHHHHHHcCcHHHHHHHHHhCCCCCC
Confidence 355566788999999998875322100 00 01122335688889999999999999887
Q ss_pred -CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCC
Q 039376 108 -DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGT 186 (289)
Q Consensus 108 -~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t 186 (289)
+..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..++ .+++++|++. |++++.++..|.|
T Consensus 69 ~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~~~~g~t 141 (231)
T 3aji_A 69 KDDAGWSPLHIAASAGXDEIVKALLV-KGAHVNAV-NQNGCTPLHYAASKNR---HEIAVMLLEG--GANPDAKDHYDAT 141 (231)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred cCCCCCCHHHHHHHcCHHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCCcCCCCCc
Confidence 5589999999999999999999999 58999998 9999999999999999 9999999999 9999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHH
Q 039376 187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLE 266 (289)
Q Consensus 187 ~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~ 266 (289)
|||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..++.+++++|+++|++++ ..+..|.||++
T Consensus 142 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~l~ 210 (231)
T 3aji_A 142 AMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY----------IENKEEKTPLQ 210 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC----------CCCTTSCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHhcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC----------CCCCCCCCHHH
Confidence 999999999999999999999995 9999999999999999999999999999999999 99999999999
Q ss_pred HHHHhCCCCc
Q 039376 267 ILIEFNFLGQ 276 (289)
Q Consensus 267 ~a~~~g~~~~ 276 (289)
+|...+..++
T Consensus 211 ~A~~~~~~~i 220 (231)
T 3aji_A 211 VAKGGLGLIL 220 (231)
T ss_dssp HSCHHHHHHH
T ss_pred HHHhhHHHHH
Confidence 9988877664
No 12
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=2.6e-32 Score=214.95 Aligned_cols=150 Identities=23% Similarity=0.306 Sum_probs=143.4
Q ss_pred hHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHH
Q 039376 113 PQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAA 192 (289)
Q Consensus 113 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~ 192 (289)
++|+.||+.|+.++|++||+ .|++++.+ +..|+||||+|+..++ .+++++|++. |++++.++..|+||||+|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~-d~~g~t~l~~a~~~~~---~~~~~~ll~~--gad~~~~d~~g~TpLh~A~ 78 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE-NGADVNAS-DSDGRTPLHHAAENGH---KEVVKLLISK--GADVNAKDSDGRTPLHHAA 78 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH-CCCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHhc--ccchhhhccCCCCHHHHHH
Confidence 47999999999999999999 69999999 9999999999999999 9999999999 9999999999999999999
Q ss_pred HhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhC
Q 039376 193 IVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFN 272 (289)
Q Consensus 193 ~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g 272 (289)
..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++++ ..+.+|+|||++|+..|
T Consensus 79 ~~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~----------~~d~~G~TpL~~A~~~g 147 (169)
T 4gpm_A 79 ENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN----------TSDSDGRTPLDLAREHG 147 (169)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTT
T ss_pred HcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc----------ccCCCCCCHHHHHHHcC
Confidence 999999999999999996 9999999999999999999999999999999999 99999999999999999
Q ss_pred CCCccccc
Q 039376 273 FLGQYTCN 280 (289)
Q Consensus 273 ~~~~~~~~ 280 (289)
+.++...+
T Consensus 148 ~~~iv~~L 155 (169)
T 4gpm_A 148 NEEVVKLL 155 (169)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 98865444
No 13
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3.4e-32 Score=225.54 Aligned_cols=214 Identities=14% Similarity=0.095 Sum_probs=184.0
Q ss_pred CchhhhhhcCCchHHHHHHHhc----cCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHc
Q 039376 28 QPSSRLLDSKNEDEIVKMKQKD----FAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVET 103 (289)
Q Consensus 28 ~~~~~~~~~~~~~~iv~~L~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 103 (289)
.....++...|..+++++|++. +....... .......+.++..++.+++++|+++
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~---------------------~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN---------------------NLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC---------------------TTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccc---------------------ccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 4456677788999999999873 22221111 0112233467888999999999999
Q ss_pred CCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCC----CcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 039376 104 GVKV---DLGEHPQLRRALVRKDWKEVERFISENPD----TLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLD 176 (289)
Q Consensus 104 g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~----~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~ 176 (289)
|+++ +..|.||||+|+..|+.+++++|++. +. +++.. +..|.||||+|+..|+ .+++++|++. |++
T Consensus 69 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~ 141 (241)
T 1k1a_A 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDS-AAPGTLDLEAR-NYDGLTALHVAVNTEC---QETVQLLLER--GAD 141 (241)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SCTTSCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHT--TCC
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccccc-CcCCCcHHHHHHHcCC---HHHHHHHHHc--CCC
Confidence 9986 56899999999999999999999996 44 67777 8899999999999999 9999999999 999
Q ss_pred ccccC-CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCc
Q 039376 177 LEETD-TSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNP 255 (289)
Q Consensus 177 ~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~ 255 (289)
++..+ ..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++
T Consensus 142 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------- 210 (241)
T 1k1a_A 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS---------- 210 (241)
T ss_dssp TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT----------
T ss_pred cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC----------
Confidence 99998 78999999999999999999999999995 9999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHhCCCCccccc
Q 039376 256 FAGECGLKLLEILIEFNFLGQYTCN 280 (289)
Q Consensus 256 ~~~~~g~~~l~~a~~~g~~~~~~~~ 280 (289)
..+..|.||+++|+..|+.+++..+
T Consensus 211 ~~~~~g~tpl~~A~~~~~~~i~~~l 235 (241)
T 1k1a_A 211 LKNCHNDTPLMVARSRRVIDILRGK 235 (241)
T ss_dssp CCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred CcCCCCCCHHHHHHhcCcHHHHhhh
Confidence 9999999999999999988865544
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6.8e-32 Score=227.23 Aligned_cols=203 Identities=13% Similarity=0.123 Sum_probs=176.3
Q ss_pred hhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcC--
Q 039376 30 SSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKV-- 107 (289)
Q Consensus 30 ~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~-- 107 (289)
....+...|..+++++|++.+.+..... .......+.++..++.+++++|+++|+++
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~---------------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 64 (261)
T 2xai_A 6 PMHEAAIHGHQLSLRNLISQGWAVNIIT---------------------ADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64 (261)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSCCC---------------------TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcC---------------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 4556677889999999999876543222 01122345688889999999999999987
Q ss_pred -CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCC
Q 039376 108 -DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGT 186 (289)
Q Consensus 108 -~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t 186 (289)
|..|.||||+|+..|+.+++++|++ .+++++.. ..|.||||+|+..|+ .+++++|++. |++++.++..|.|
T Consensus 65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~--~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t 136 (261)
T 2xai_A 65 VTADWHTPLFNACVSGSWDCVNLLLQ-HGASVQPE--SDLASPIHEAARRGH---VECVNSLIAY--GGNIDHKISHLGT 136 (261)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCS--CTTCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCBTTTBC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC--CCCCCHHHHHHHcCc---HHHHHHHHHc--CCCCCcCCCCCCC
Confidence 5689999999999999999999998 57887654 569999999999999 9999999999 9999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHH
Q 039376 187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLE 266 (289)
Q Consensus 187 ~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~ 266 (289)
|||+|+..|+.+++++|+++|+++ + .+..|+||||+|+..++.+++++|+++|++++ ..+..|.||++
T Consensus 137 ~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~----------~~d~~g~tpl~ 204 (261)
T 2xai_A 137 PLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVARTASEELACLLMDFGADTQ----------AKNAEGKRPVE 204 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCT-T-CCBTTBCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCGGG
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCC-C-CCCCCCChHHHHHHcCCHHHHHHHHHcCCCCC----------CcCCCCCChhh
Confidence 999999999999999999999996 6 48899999999999999999999999999999 89999999999
Q ss_pred HHHHhCC
Q 039376 267 ILIEFNF 273 (289)
Q Consensus 267 ~a~~~g~ 273 (289)
+|+.++.
T Consensus 205 ~A~~~~~ 211 (261)
T 2xai_A 205 LVPPESP 211 (261)
T ss_dssp GSCTTCT
T ss_pred hcccccc
Confidence 8886554
No 15
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.98 E-value=8.2e-32 Score=221.52 Aligned_cols=206 Identities=14% Similarity=0.099 Sum_probs=178.2
Q ss_pred hhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCC--cC
Q 039376 30 SSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGV--KV 107 (289)
Q Consensus 30 ~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~--~~ 107 (289)
....+...|..+++++|++.+....... +.......+.++..++.+++++|+++|+ ++
T Consensus 5 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~ 64 (228)
T 2dzn_A 5 PLHQACMENEFFKVQELLHSKPSLLLQK--------------------DQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGTTCC--------------------CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCG
T ss_pred HHHHHHHhCCHHHHHHHHhcCccccccC--------------------CCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Confidence 4556677889999999998874332100 0011233456888899999999999994 32
Q ss_pred ----CCCCchHHHHHHHcCCHHHHHHHHhhCC--CCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC
Q 039376 108 ----DLGEHPQLRRALVRKDWKEVERFISENP--DTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD 181 (289)
Q Consensus 108 ----~~~g~t~Lh~A~~~g~~~~v~~ll~~~~--~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~ 181 (289)
+..|.||||+|+..|+.+++++|++. + .+++.+ +..|.||||+|+..++ .+++++|++. |++++.++
T Consensus 65 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~~ 137 (228)
T 2dzn_A 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKI-TNQGVTCLHLAVGKKW---FEVSQFLIEN--GASVRIKD 137 (228)
T ss_dssp GGCCCTTSCCHHHHHHHHCCHHHHHHHHSS-SSCCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHT--TCCSCCCC
T ss_pred cccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccccC-CcCCCCHHHHHHHcCC---HhHHHHHHHc--CCCccccC
Confidence 56899999999999999999999984 5 788888 8999999999999999 9999999999 99999999
Q ss_pred CCCCCHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hcCCCcccccccCCCCccccc
Q 039376 182 TSGGTPLTSAAIVGNTKAAKILVKYN-KNLPNMRNRIGQCPIHCAARSGHRETVEYLL-SVTGVEEEDSHEKYSNPFAGE 259 (289)
Q Consensus 182 ~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~~~~~~~~~~ 259 (289)
..|.||||+|+..|+.+++++|++.| +++ +.++..|+||||+|+..|+.+++++|+ ++|++++ ..+.
T Consensus 138 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~----------~~~~ 206 (228)
T 2dzn_A 138 KFNQIPLHRAASVGSLKLIELLCGLGKSAV-NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD----------LVDN 206 (228)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHTTTCCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC----------CBCT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhcCcccc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCC----------ccCC
Confidence 99999999999999999999999999 885 999999999999999999999999999 9999999 9999
Q ss_pred ccchHHHHHHHhCC
Q 039376 260 CGLKLLEILIEFNF 273 (289)
Q Consensus 260 ~g~~~l~~a~~~g~ 273 (289)
.|.||+++|...+.
T Consensus 207 ~g~t~l~~A~~~~~ 220 (228)
T 2dzn_A 207 KGAKAEDVALNEQV 220 (228)
T ss_dssp TSCBGGGGCSSTTH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999976543
No 16
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.98 E-value=1.4e-31 Score=226.84 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=162.0
Q ss_pred ccHHHhcCCHHHHHHHHHcCCc---C---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCC
Q 039376 85 QQIKQVKTSEDWFREMVETGVK---V---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINE 158 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~~---~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~ 158 (289)
.+.|+..++.+++++|+++|++ + +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-~~~g~tpL~~A~~~~~ 90 (282)
T 1oy3_D 13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVA-ERGGHTALHLACRVRA 90 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCC-CTTSCCHHHHHTTTTC
T ss_pred HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCC
Confidence 3468889999999999999876 3 5689999999999999999999999 68999999 9999999999999999
Q ss_pred chHHHHHHHHHhccCCCC-----------------------------------------------ccccCCCCCCHHHHH
Q 039376 159 DEAHRLLDEFLDMISPLD-----------------------------------------------LEETDTSGGTPLTSA 191 (289)
Q Consensus 159 ~~~~~~v~~Ll~~~~g~~-----------------------------------------------~~~~~~~g~t~L~~A 191 (289)
.+++++|++. +++ ++.++..|.||||+|
T Consensus 91 ---~~~v~~Ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A 165 (282)
T 1oy3_D 91 ---HTCACVLLQP--RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA 165 (282)
T ss_dssp ---HHHHHHHSSS--CCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred ---cchhHhhhcc--CCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHH
Confidence 9999999987 543 677888999999999
Q ss_pred HHhCCHHHHHHHHHcCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHH
Q 039376 192 AIVGNTKAAKILVKYNKNLPNMRNR-IGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIE 270 (289)
Q Consensus 192 ~~~g~~~~v~~Ll~~g~~i~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~ 270 (289)
+..|+.+++++|+++|+++ +..+. .|+||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+.
T Consensus 166 ~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~----------~~d~~g~tpL~~A~~ 234 (282)
T 1oy3_D 166 VIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT----------ARMYGGRTPLGSALL 234 (282)
T ss_dssp HHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHT
T ss_pred HHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc----------ccccCCCCHHHHHHH
Confidence 9999999999999999996 88875 49999999999999999999999999999 999999999999999
Q ss_pred hCCCCccccc
Q 039376 271 FNFLGQYTCN 280 (289)
Q Consensus 271 ~g~~~~~~~~ 280 (289)
.|+.++...+
T Consensus 235 ~~~~~~v~~L 244 (282)
T 1oy3_D 235 RPNPILARLL 244 (282)
T ss_dssp SSCHHHHHHH
T ss_pred cCCcHHHHHH
Confidence 9988854433
No 17
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.97 E-value=1.4e-30 Score=226.89 Aligned_cols=231 Identities=13% Similarity=0.038 Sum_probs=179.3
Q ss_pred hhhhhcCCchHHHHHHHhccCCCc----------hhhhhcCChhhhhhcccCCCCccch---------------------
Q 039376 31 SRLLDSKNEDEIVKMKQKDFAQPS----------SKLVVGKKEDEITEMKPANDPIIEV--------------------- 79 (289)
Q Consensus 31 ~~~~~~~~~~~iv~~L~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~--------------------- 79 (289)
...+...|+.++|++|++.|+++. ...++..+..+++++|+..++..+.
T Consensus 29 L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (337)
T 4g8k_A 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLL 108 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhh
Confidence 344556777777777777764432 2345556666777777665554433
Q ss_pred ------------hcccccc---HHHhcCCHHHHHHHHHcCCcCC-------------CCCchHHHHHHHcCCHHHHHHHH
Q 039376 80 ------------KSHERQQ---IKQVKTSEDWFREMVETGVKVD-------------LGEHPQLRRALVRKDWKEVERFI 131 (289)
Q Consensus 80 ------------~~~~~~~---~~~~~~~~~~~~~Ll~~g~~~~-------------~~g~t~Lh~A~~~g~~~~v~~ll 131 (289)
.+..+.+ .+...++.+++++|+++|++++ ..|.||||+|++.|+.+++++||
T Consensus 109 ~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL 188 (337)
T 4g8k_A 109 KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 188 (337)
T ss_dssp HHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHH
Confidence 3333333 4667888999999999988753 25789999999999999999999
Q ss_pred hhCCCCcccccCCCCChHHHHHHhcCCch-HHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHc-CCC
Q 039376 132 SENPDTLYAKFTESCGTLFHSMANINEDE-AHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKY-NKN 209 (289)
Q Consensus 132 ~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~-~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~ 209 (289)
.+.+++++.+ +..|.|++|+++..+... ...++++|++. |++++.++..|+||||+|+..|+.+++++|++. |++
T Consensus 189 ~~~gad~n~~-d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~--gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~ 265 (337)
T 4g8k_A 189 DEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDH--GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 265 (337)
T ss_dssp HHSCCCTTCC-CTTSCCHHHHHHHHSCTTTHHHHHHHHHHT--TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC
T ss_pred hccCCCcCcc-CCCCCcHHHHHHHHcCcccHHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc
Confidence 7778999988 889999998877665421 13578888888 899999999999999999999999999999985 778
Q ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376 210 LPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN 280 (289)
Q Consensus 210 i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~ 280 (289)
+ +.+|..|+||||+|+..|+.+++++|+++|++++ . .+||++|+.+|+.++...+
T Consensus 266 v-n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n----------~-----~~~L~~A~~~~~~~iv~~L 320 (337)
T 4g8k_A 266 I-NDTDSDGKTALLLAVELKLKKIAELLCKRGASTD----------C-----GDLVMTARRNYDHSLVKVL 320 (337)
T ss_dssp T-TCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST----------T-----CCHHHHHHHTTCHHHHHHH
T ss_pred c-cCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------C-----CCHHHHHHHcCCHHHHHHH
Confidence 5 8999999999999999999999999999999987 4 3589999999888754433
No 18
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.97 E-value=7.8e-31 Score=223.65 Aligned_cols=204 Identities=13% Similarity=0.124 Sum_probs=177.1
Q ss_pred CCchhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCc
Q 039376 27 SQPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVK 106 (289)
Q Consensus 27 ~~~~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~ 106 (289)
......++...|..++|++|++.+.+..... . ......+.|+..++.+++++|+++|++
T Consensus 59 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~--------------~-------~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 117 (285)
T 3d9h_A 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIIT--------------A-------DHVSPLHEACLGGHLSCVKILLKHGAQ 117 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCSCEEC--------------T-------TCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC--------------C-------CCCCHHHHHHHCCcHHHHHHHHHCCCC
Confidence 3445667778889999999998875543222 0 112234568888999999999999998
Q ss_pred C---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCC
Q 039376 107 V---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTS 183 (289)
Q Consensus 107 ~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~ 183 (289)
+ |..|.||||+|+..|+.+++++|++ .+++++.. ..|.||||+|+..|+ .+++++|++. |++++.++..
T Consensus 118 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~--~~g~t~L~~A~~~g~---~~~v~~Ll~~--g~~~~~~d~~ 189 (285)
T 3d9h_A 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQ-HGASVQPE--SDLASPIHEAARRGH---VECVNSLIAY--GGNIDHKISH 189 (285)
T ss_dssp SSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCS--CTTSCHHHHHHHHTC---HHHHHHHHHT--TCCTTCCBTT
T ss_pred CCCCCCCCCCHHHHHHHcCHHHHHHHHHH-CCCCCCCC--CCCCCHHHHHHHcCC---HHHHHHHHHC--CCCCCCcCCC
Confidence 7 5689999999999999999999998 57877654 459999999999999 9999999999 9999999999
Q ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccch
Q 039376 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLK 263 (289)
Q Consensus 184 g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~ 263 (289)
|.||||+|+..|+.+++++|++.|+++ + .+..|+||||+|+..++.+++++|+++|++++ ..+..|.|
T Consensus 190 g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~----------~~d~~g~t 257 (285)
T 3d9h_A 190 LGTPLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELACLLMDFGADTQ----------AKNAEGKR 257 (285)
T ss_dssp TBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCC
T ss_pred CCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------CcCCCCCC
Confidence 999999999999999999999999996 6 48999999999999999999999999999999 99999999
Q ss_pred HHHHHHHh
Q 039376 264 LLEILIEF 271 (289)
Q Consensus 264 ~l~~a~~~ 271 (289)
||++|+.+
T Consensus 258 ~l~~A~~~ 265 (285)
T 3d9h_A 258 PVELVPPE 265 (285)
T ss_dssp GGGGSCTT
T ss_pred HHHHhcCc
Confidence 99998843
No 19
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=5.7e-31 Score=217.27 Aligned_cols=183 Identities=15% Similarity=0.180 Sum_probs=160.4
Q ss_pred ccHHHhcCCHHHHHHHHHc-CCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCc-----ccccCCCCChHHHHHHh
Q 039376 85 QQIKQVKTSEDWFREMVET-GVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTL-----YAKFTESCGTLFHSMAN 155 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~-g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~-----~~~~~~~~~t~Lh~A~~ 155 (289)
.+.|+..++.++++.|++. |+++ |..|.||||+|+..|+.+++++|++. ++++ +.+ +..|.||||+|+.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~-~~~g~t~L~~A~~ 84 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA-APELVFEPMTSE-LYEGQTALHIAVI 84 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCCST-TTTTCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-Cchhcccccccc-CCCCcCHHHHHHH
Confidence 4568889999999999998 8876 56899999999999999999999995 6655 444 6789999999999
Q ss_pred cCCchHHHHHHHHHhccCCCCccccCC-------------CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHH
Q 039376 156 INEDEAHRLLDEFLDMISPLDLEETDT-------------SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI 222 (289)
Q Consensus 156 ~g~~~~~~~v~~Ll~~~~g~~~~~~~~-------------~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L 222 (289)
.|+ .+++++|++. |++++..+. .|.||||+|+..|+.+++++|+++|+++ +.+|..|+|||
T Consensus 85 ~~~---~~~v~~Ll~~--g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L 158 (232)
T 2rfa_A 85 NQN---VNLVRALLAR--GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVL 158 (232)
T ss_dssp TTC---HHHHHHHHHT--TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred cCC---HHHHHHHHhC--CCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHH
Confidence 999 9999999999 999988765 7999999999999999999999999995 99999999999
Q ss_pred HHHHHcCCHHHH----HHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCcccc
Q 039376 223 HCAARSGHRETV----EYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTC 279 (289)
Q Consensus 223 ~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~ 279 (289)
|+|+..++.+++ ++|+++|+++. ........+..|.|||++|+..|+.++...
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~----~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~ 215 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDGGDH----LKSLELVPNNQGLTPFKLAGVEGNIVMFQH 215 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTCSCS----SCCGGGCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCchh----hhhhhccCCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999988 99999999873 000001788899999999999999885443
No 20
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=1.2e-30 Score=227.67 Aligned_cols=225 Identities=17% Similarity=0.143 Sum_probs=188.5
Q ss_pred hhhhcCCchHHHHHHHhcc-C---------CCchhhhhcCChhhhhhcccCCCCccchhcccccc---HHHhcCCHHHHH
Q 039376 32 RLLDSKNEDEIVKMKQKDF-A---------QPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTSEDWFR 98 (289)
Q Consensus 32 ~~~~~~~~~~iv~~L~~~~-~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 98 (289)
..+...|..++|+.++... . ......+...+..++++++...+++++..+..+.+ .++..++.++++
T Consensus 29 ~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~ 108 (351)
T 3utm_A 29 LEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE 108 (351)
T ss_dssp HHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHH
Confidence 3345677777777777642 1 22345666777778888888877777777666544 477889999999
Q ss_pred HHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccc----------------------------------
Q 039376 99 EMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAK---------------------------------- 141 (289)
Q Consensus 99 ~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~---------------------------------- 141 (289)
+|+++|+++ |..|.||||+|+..|+.+++++|++ .+++++..
T Consensus 109 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 187 (351)
T 3utm_A 109 LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS-HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAR 187 (351)
T ss_dssp HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHH
Confidence 999999987 5578999999999999999999998 57776543
Q ss_pred -------------------cCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHH
Q 039376 142 -------------------FTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKI 202 (289)
Q Consensus 142 -------------------~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 202 (289)
.+..|.||||+|+..++....+++++|++. |++++.++..|.||||+|+..|+.+++++
T Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 265 (351)
T 3utm_A 188 EADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK--GANVNEKNKDFMTPLHVAAERAHNDVMEV 265 (351)
T ss_dssp TTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred hccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc--CCCcCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 135678999999999443338999999999 99999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHH
Q 039376 203 LVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIE 270 (289)
Q Consensus 203 Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~ 270 (289)
|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++++ ..+..|.||+++|..
T Consensus 266 Ll~~ga~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~----------~~~~~g~tal~~a~~ 322 (351)
T 3utm_A 266 LHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS----------IISLQGFTAAQMGNE 322 (351)
T ss_dssp HHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHSCH
T ss_pred HHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC----------CcCCCCCChhhhhhH
Confidence 99999996 9999999999999999999999999999999999 999999999998743
No 21
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=7.7e-31 Score=211.69 Aligned_cols=177 Identities=14% Similarity=0.202 Sum_probs=163.0
Q ss_pred ccHHHhcCCHHHHHHHHHcCC-cC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCch
Q 039376 85 QQIKQVKTSEDWFREMVETGV-KV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDE 160 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~-~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~ 160 (289)
.+.++..++.+.++.|+..+. ++ |..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..|+
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~l~~A~~~~~-- 84 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID-RGADINLQ-NSISDSPYLYAGAQGR-- 84 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC--
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCC--
Confidence 445788899999999999876 54 5689999999999999999999999 68999998 9999999999999999
Q ss_pred HHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCC-----HHHH
Q 039376 161 AHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYN-KNLPNMRNRIGQCPIHCAARSGH-----RETV 234 (289)
Q Consensus 161 ~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~~~~~g~t~L~~A~~~~~-----~~~~ 234 (289)
.+++++|++.. +.+++..+..|.||||+|+..|+.+++++|+++| +++ +.++..|+||||+|+..++ .+++
T Consensus 85 -~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 85 -TEILAYMLKHA-TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp -HHHHHHHHHHS-CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred -HHHHHHHHhcc-CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 99999999553 7899999999999999999999999999999999 774 9999999999999999988 9999
Q ss_pred HHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376 235 EYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT 278 (289)
Q Consensus 235 ~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~ 278 (289)
++|+++|++++ ..+..|.|||++|+..|+.++..
T Consensus 162 ~~Ll~~ga~~~----------~~~~~g~t~l~~A~~~~~~~~~~ 195 (201)
T 3hra_A 162 KLLMENGADQS----------IKDNSGRTAMDYANQKGYTEISK 195 (201)
T ss_dssp HHHHHTTCCTT----------CCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHHCCCCCC----------ccCCCCCCHHHHHHHcCCHhHHH
Confidence 99999999999 99999999999999999888543
No 22
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.97 E-value=1.8e-30 Score=214.83 Aligned_cols=176 Identities=19% Similarity=0.182 Sum_probs=164.8
Q ss_pred ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376 85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA 161 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~ 161 (289)
.+.++..++.+++++|+++|+++ +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+
T Consensus 15 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~--- 89 (237)
T 3b7b_A 15 LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPK-DAEGSTCLHLAAKKGH--- 89 (237)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCC-CTTSCCHHHHHHHTTC---
T ss_pred HHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCC-CCCCCcHHHHHHHcCC---
Confidence 34588899999999999999987 5589999999999999999999998 68899988 8999999999999999
Q ss_pred HHHHHHHHhccCC-CCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 039376 162 HRLLDEFLDMISP-LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240 (289)
Q Consensus 162 ~~~v~~Ll~~~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 240 (289)
.+++++|++. + .+++..+..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|+++
T Consensus 90 ~~~~~~Ll~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 166 (237)
T 3b7b_A 90 YEVVQYLLSN--GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAA 166 (237)
T ss_dssp HHHHHHHHTT--TCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTT
T ss_pred HHHHHHHHhC--CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 9999999998 6 889999999999999999999999999999999995 99999999999999999999999999999
Q ss_pred CCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376 241 TGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT 278 (289)
Q Consensus 241 g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~ 278 (289)
|++++ ..+..|.||||+|+..|..++..
T Consensus 167 g~~~~----------~~~~~g~t~L~~A~~~~~~~~v~ 194 (237)
T 3b7b_A 167 KCDLH----------AVNIHGDSPLHIAARENRYDCVV 194 (237)
T ss_dssp TCCTT----------CCCTTCCCHHHHHHHTTCHHHHH
T ss_pred CCCCC----------CcCCCCCCHHHHHHHhCCHhHHH
Confidence 99999 99999999999999999887543
No 23
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.97 E-value=3e-31 Score=222.24 Aligned_cols=172 Identities=14% Similarity=0.154 Sum_probs=146.2
Q ss_pred cCCHHHHHHHHHcCCcC----CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHH
Q 039376 91 KTSEDWFREMVETGVKV----DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLD 166 (289)
Q Consensus 91 ~~~~~~~~~Ll~~g~~~----~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~ 166 (289)
.++.++++.|+++|+++ |..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..|+ .++++
T Consensus 33 ~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~ 107 (253)
T 1yyh_A 33 EDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQ-DNMGRTPLHAAVSADA---QGVFQ 107 (253)
T ss_dssp -------------------CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHHTC---HHHHH
T ss_pred CCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCC---HHHHH
Confidence 45789999999999876 5689999999999999999999999 58999999 9999999999999999 99999
Q ss_pred HHHhccCCC-CccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376 167 EFLDMISPL-DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE 245 (289)
Q Consensus 167 ~Ll~~~~g~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 245 (289)
+|++. +. +++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++
T Consensus 108 ~Ll~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 184 (253)
T 1yyh_A 108 ILIRN--RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 184 (253)
T ss_dssp HHHHS--TTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred HHHHc--CCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 99998 65 89999999999999999999999999999999995 9999999999999999999999999999999999
Q ss_pred cccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376 246 EDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN 280 (289)
Q Consensus 246 ~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~ 280 (289)
..+..|.||||+|+..|..++...+
T Consensus 185 ----------~~~~~g~tpL~~A~~~~~~~~v~~L 209 (253)
T 1yyh_A 185 ----------MQNNREETPLFLAAREGSYETAKVL 209 (253)
T ss_dssp ----------CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred ----------CcCCCCCCHHHHHHHCCCHHHHHHH
Confidence 9999999999999999998854433
No 24
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.97 E-value=2e-30 Score=213.21 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=162.9
Q ss_pred ccHHHhcCCHHHHHHHHHcCCcC----CCCCchHHHHHHHcCCHHHHHHHHhhCC--CCccc-ccCCCCChHHHHHHhcC
Q 039376 85 QQIKQVKTSEDWFREMVETGVKV----DLGEHPQLRRALVRKDWKEVERFISENP--DTLYA-KFTESCGTLFHSMANIN 157 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~~~----~~~g~t~Lh~A~~~g~~~~v~~ll~~~~--~~~~~-~~~~~~~t~Lh~A~~~g 157 (289)
.+.|+..++.++++.|++.+.+. +..|.||||+|++.|+.+++++|++. + .+++. . +..|.||||+|+..|
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~-~~~g~t~L~~A~~~~ 83 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYP-DDSGWTPFHIACSVG 83 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-CTTCCGGGCC-CTTSCCHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc-cccccccccC-CCCCCCHHHHHHHcC
Confidence 35678889999999999998764 67899999999999999999999994 6 55555 5 789999999999999
Q ss_pred CchHHHHHHHHHhccCC--CCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 039376 158 EDEAHRLLDEFLDMISP--LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235 (289)
Q Consensus 158 ~~~~~~~v~~Ll~~~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~ 235 (289)
+ .+++++|++. | ++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.++++
T Consensus 84 ~---~~~~~~Ll~~--g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~ 157 (228)
T 2dzn_A 84 N---LEVVKSLYDR--PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIE 157 (228)
T ss_dssp C---HHHHHHHHSS--SSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred C---HHHHHHHHhC--CCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHH
Confidence 9 9999999998 7 889999999999999999999999999999999995 999999999999999999999999
Q ss_pred HHHhcC-CCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376 236 YLLSVT-GVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN 280 (289)
Q Consensus 236 ~Ll~~g-~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~ 280 (289)
+|+++| ++++ ..+..|.||||+|+..|+.++...+
T Consensus 158 ~Ll~~g~~~~~----------~~d~~g~t~L~~A~~~~~~~~v~~L 193 (228)
T 2dzn_A 158 LLCGLGKSAVN----------WQDKQGWTPLFHALAEGHGDAAVLL 193 (228)
T ss_dssp HHHTTTCCCSC----------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHhcCccccc----------CcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 999999 9999 9999999999999999998854444
No 25
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.97 E-value=2.4e-31 Score=226.81 Aligned_cols=175 Identities=12% Similarity=0.067 Sum_probs=138.7
Q ss_pred cHHHhcCCHHHHHHHHHcCCcCCC-CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHH
Q 039376 86 QIKQVKTSEDWFREMVETGVKVDL-GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRL 164 (289)
Q Consensus 86 ~~~~~~~~~~~~~~Ll~~g~~~~~-~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~ 164 (289)
+.|+..++.+++++|+++|++++. .|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..|+ .++
T Consensus 36 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-d~~g~t~L~~A~~~g~---~~~ 110 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLF-SGLDDSQF-DDKGNTALYYAVDSGN---MQT 110 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---HHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc-CCCCCcHHHHHHHcCC---HHH
Confidence 457777888888888888887743 67888888888888888888887 57888877 7788888888888888 888
Q ss_pred HHHHHhccCCCCccccCCCC-CCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 039376 165 LDEFLDMISPLDLEETDTSG-GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV 243 (289)
Q Consensus 165 v~~Ll~~~~g~~~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 243 (289)
+++|++. |++++.++..| .||||+|+..|+.+++++|+++|++. . ....|+||||+|+..|+.+++++|+++|++
T Consensus 111 v~~Ll~~--ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad 186 (285)
T 3kea_A 111 VKLFVKK--NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-F-DLAILLSCIHITIKNGHVDMMILLLDYMTS 186 (285)
T ss_dssp HHHHHHH--CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT-C-CCSTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc-c-cccCCccHHHHHHHcChHHHHHHHHHcCCC
Confidence 8888888 88888888888 68888888888888888888888764 1 112778888888888888888888888888
Q ss_pred cccccccCCCCcccccccchH-HHHHHHhCCCCcccc
Q 039376 244 EEEDSHEKYSNPFAGECGLKL-LEILIEFNFLGQYTC 279 (289)
Q Consensus 244 ~~~~~~~~~~~~~~~~~g~~~-l~~a~~~g~~~~~~~ 279 (289)
++ ..+..|.|| ||+|+..|+.++...
T Consensus 187 ~n----------~~~~~g~t~~L~~A~~~~~~~~v~~ 213 (285)
T 3kea_A 187 TN----------TNNSLLFIPDIKLAIDNKDIEMLQA 213 (285)
T ss_dssp TC----------TTCCCBCCTTHHHHHHHTCHHHHHH
T ss_pred CC----------cccCCCCChHHHHHHHcCCHHHHHH
Confidence 88 788888886 888888887774433
No 26
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.97 E-value=6.2e-31 Score=232.62 Aligned_cols=206 Identities=16% Similarity=0.162 Sum_probs=179.8
Q ss_pred hhhhcCChhhhhhccc--------CCCCccchhcccccc---HHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHc
Q 039376 56 KLVVGKKEDEITEMKP--------ANDPIIEVKSHERQQ---IKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVR 121 (289)
Q Consensus 56 ~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~ 121 (289)
..+...+..++++++. ..+.+++..+..+.+ .|+..++.+++++|+++|+++ +..|.||||+|+..
T Consensus 130 h~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~ 209 (373)
T 2fo1_E 130 HWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN 209 (373)
T ss_dssp HHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHC
Confidence 4455555555555554 567777777666655 478899999999999999987 56899999999999
Q ss_pred CCHHHHHHHHhhCC---CCcccccCCCCChHHHHHHhcC---CchHHHHHHHHHhccCCCCccc--------cCCCCCCH
Q 039376 122 KDWKEVERFISENP---DTLYAKFTESCGTLFHSMANIN---EDEAHRLLDEFLDMISPLDLEE--------TDTSGGTP 187 (289)
Q Consensus 122 g~~~~v~~ll~~~~---~~~~~~~~~~~~t~Lh~A~~~g---~~~~~~~v~~Ll~~~~g~~~~~--------~~~~g~t~ 187 (289)
|+.+++++|++. + .+++.. +..|.||||+|+..+ + .+++++|++. |++++. .+..|.||
T Consensus 210 g~~~~v~~Ll~~-~~~~~~~~~~-d~~g~t~L~~A~~~~~~~~---~~~v~~Ll~~--g~~~~~~~~~~~~~~d~~g~t~ 282 (373)
T 2fo1_E 210 RDFGMMVYMLNS-TKLKGDIEEL-DRNGMTALMIVAHNEGRDQ---VASAKLLVEK--GAKVDYDGAARKDSEKYKGRTA 282 (373)
T ss_dssp TCHHHHHHHTTS-HHHHHTTSCC-CTTSCCHHHHHHHSCSTTH---HHHHHHHHHH--TCCSSCCSGGGTSSSSCCCCCT
T ss_pred CCHHHHHHHHhc-CccccChhhc-CCCCCCHHHHHHHhCCcch---HHHHHHHHHC--CCCcccccccccCcccccCCCH
Confidence 999999999984 4 678888 899999999999998 6 9999999999 898876 56789999
Q ss_pred HHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHH
Q 039376 188 LTSAAIVGNTKAAKILVKYN-KNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLE 266 (289)
Q Consensus 188 L~~A~~~g~~~~v~~Ll~~g-~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~ 266 (289)
||+|+..|+.+++++|++++ +++ +.+|..|+||||+|+..|+.+++++|+++|++++ ..+..|.|||+
T Consensus 283 Lh~A~~~g~~~~v~~Ll~~~~~~~-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~----------~~d~~g~t~l~ 351 (373)
T 2fo1_E 283 LHYAAQVSNMPIVKYLVGEKGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE----------AVDATDHTARQ 351 (373)
T ss_dssp HHHHHSSCCHHHHHHHHHHSCCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS----------CCCSSSCCHHH
T ss_pred HHHHHHhCCHHHHHHHHHhcCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc----------CCCCCCCCHHH
Confidence 99999999999999999886 785 9999999999999999999999999999999999 99999999999
Q ss_pred HHHHhCCCCcccc
Q 039376 267 ILIEFNFLGQYTC 279 (289)
Q Consensus 267 ~a~~~g~~~~~~~ 279 (289)
+|+.+|+.++...
T Consensus 352 ~A~~~g~~~iv~~ 364 (373)
T 2fo1_E 352 LAQANNHHNIVDI 364 (373)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHH
Confidence 9999999885443
No 27
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.97 E-value=5.8e-30 Score=223.04 Aligned_cols=210 Identities=15% Similarity=0.162 Sum_probs=180.8
Q ss_pred hhhhhcCChhhhhhcccCCCCccchhccc-c---ccHHHhcCCHHHHHHHHHcCCcC-----------------------
Q 039376 55 SKLVVGKKEDEITEMKPANDPIIEVKSHE-R---QQIKQVKTSEDWFREMVETGVKV----------------------- 107 (289)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~Ll~~g~~~----------------------- 107 (289)
...++..++.+++++|+..|++++..+.. + .+.|+..++.+++++|+++|+++
T Consensus 29 L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (337)
T 4g8k_A 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLL 108 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhh
Confidence 34567778889999999999998877654 3 34588999999999999998764
Q ss_pred -------------CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccc---------cCCCCChHHHHHHhcCCchHHHHH
Q 039376 108 -------------DLGEHPQLRRALVRKDWKEVERFISENPDTLYAK---------FTESCGTLFHSMANINEDEAHRLL 165 (289)
Q Consensus 108 -------------~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~---------~~~~~~t~Lh~A~~~g~~~~~~~v 165 (289)
|..|.||||+|+..|+.++++++++ .+++++.+ .+..|.||||+|+..|+ .++|
T Consensus 109 ~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~-~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~---~~~v 184 (337)
T 4g8k_A 109 KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVL 184 (337)
T ss_dssp HHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCCCC-----CTTCSCCHHHHHHHHTC---HHHH
T ss_pred HHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHH-cCCCcchhhccccccccccCCCCcHHHHHHHCCC---HHHH
Confidence 3468899999999999999999998 57776643 14568999999999999 9999
Q ss_pred HHHHhccCCCCccccCCCCCCHHHHHHHhCC----HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc-
Q 039376 166 DEFLDMISPLDLEETDTSGGTPLTSAAIVGN----TKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV- 240 (289)
Q Consensus 166 ~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~- 240 (289)
++|++.. |++++.++..|.|++++++..+. ..++++|+++|+++ +.++..|+||||+|+..|+.+++++|+..
T Consensus 185 ~~LL~~~-gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~ 262 (337)
T 4g8k_A 185 KILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQE 262 (337)
T ss_dssp HHHHHHS-CCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHTST
T ss_pred HHHHhcc-CCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHHhc
Confidence 9999754 89999999999999999887654 35889999999995 99999999999999999999999999974
Q ss_pred CCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376 241 TGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN 280 (289)
Q Consensus 241 g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~ 280 (289)
|++++ ..+.+|+||||+|+..|+.++...+
T Consensus 263 ~~~vn----------~~d~~G~TpL~~A~~~g~~~iv~~L 292 (337)
T 4g8k_A 263 HIEIN----------DTDSDGKTALLLAVELKLKKIAELL 292 (337)
T ss_dssp TCCTT----------CBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred CCccc----------CcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 89999 9999999999999999998865444
No 28
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=4.9e-30 Score=217.19 Aligned_cols=207 Identities=16% Similarity=0.137 Sum_probs=183.8
Q ss_pred hhhhcCChhhhhhcccCCCCccchh-cccc---ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHH
Q 039376 56 KLVVGKKEDEITEMKPANDPIIEVK-SHER---QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVE 128 (289)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~ 128 (289)
..++..+..++++++...++.++.. ...+ .+.++..++.+++++|+++|+++ +..|.||||+|+..|+.++++
T Consensus 10 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 89 (285)
T 1wdy_A 10 IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLK 89 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence 4455666777888888888877766 3333 33588899999999999999986 568999999999999999999
Q ss_pred HHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCcccc----------CCCCCCHHHHHHHhCCHH
Q 039376 129 RFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEET----------DTSGGTPLTSAAIVGNTK 198 (289)
Q Consensus 129 ~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~----------~~~g~t~L~~A~~~g~~~ 198 (289)
+|++ .+++++.+ +..|.||||+|+..|+ .+++++|++. |++++.. +..|.||||+|+..|+.+
T Consensus 90 ~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 162 (285)
T 1wdy_A 90 LFLS-KGADVNEC-DFYGFTAFMEAAVYGK---VKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 162 (285)
T ss_dssp HHHH-TTCCTTCB-CTTCCBHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred HHHH-cCCCCCcc-CcccCCHHHHHHHhCC---HHHHHHHHHh--CCCcccccccHHHHHhhccCCCcHHHHHHHcCCHH
Confidence 9999 68999998 9999999999999999 9999999999 8988877 778999999999999999
Q ss_pred HHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCC
Q 039376 199 AAKILVKY-NKNLPNMRNRIGQCPIHCAARSGH----RETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNF 273 (289)
Q Consensus 199 ~v~~Ll~~-g~~i~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~ 273 (289)
++++|++. |+++ +..+..|+||||+|+..++ .+++++|+++|++++ ..+..|.||||+|+..|+
T Consensus 163 ~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~----------~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 163 VLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN----------VRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS----------CCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCC----------CcCCCCCcHHHHHHHcCC
Confidence 99999998 9995 9999999999999999999 999999999999999 999999999999999999
Q ss_pred CCccccc
Q 039376 274 LGQYTCN 280 (289)
Q Consensus 274 ~~~~~~~ 280 (289)
.++...+
T Consensus 232 ~~~v~~L 238 (285)
T 1wdy_A 232 LGLVQRL 238 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8854433
No 29
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=217.75 Aligned_cols=175 Identities=14% Similarity=0.128 Sum_probs=161.4
Q ss_pred ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376 85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA 161 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~ 161 (289)
.+.|+..++.+++++|+++|+++ |..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..|+
T Consensus 7 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~--- 81 (261)
T 2xai_A 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGV-TADWHTPLFNACVSGS--- 81 (261)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHHTC---
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcCC---
Confidence 45688899999999999999987 5689999999999999999999999 58999999 9999999999999999
Q ss_pred HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376 162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT 241 (289)
Q Consensus 162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 241 (289)
.+++++|++. |++++. +..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|
T Consensus 82 ~~~v~~Ll~~--g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 157 (261)
T 2xai_A 82 WDCVNLLLQH--GASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESG 157 (261)
T ss_dssp HHHHHHHHHT--TCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHC--CCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 9999999999 898875 456999999999999999999999999996 999999999999999999999999999999
Q ss_pred CCcccccccCCCCcccccccchHHHHHHHhCCCCcccc
Q 039376 242 GVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTC 279 (289)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~ 279 (289)
++++ . +..|.||||+|+..|..++...
T Consensus 158 ~~~~----------~-~~~g~t~Lh~A~~~~~~~~v~~ 184 (261)
T 2xai_A 158 ADVN----------Q-GKGQDSPLHAVARTASEELACL 184 (261)
T ss_dssp CCTT----------C-CBTTBCHHHHHHHHTCHHHHHH
T ss_pred CCCC----------C-CCCCCChHHHHHHcCCHHHHHH
Confidence 9998 5 7789999999999998875433
No 30
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.97 E-value=3.8e-30 Score=212.07 Aligned_cols=176 Identities=16% Similarity=0.142 Sum_probs=164.3
Q ss_pred ccHHHhcCCHHHHHHHHHcCCcC----CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCch
Q 039376 85 QQIKQVKTSEDWFREMVETGVKV----DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDE 160 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~~~----~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~ 160 (289)
.+.++..++.+.++.++..+... +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~-- 85 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDK-DDAGWSPLHIAASAGX-- 85 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-CTTSCCHHHHHHHHTC--
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHH-hCCCCCCc-CCCCCCHHHHHHHcCH--
Confidence 34578889999999999887542 6789999999999999999999998 58999998 9999999999999999
Q ss_pred HHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 039376 161 AHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240 (289)
Q Consensus 161 ~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 240 (289)
.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++
T Consensus 86 -~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 161 (231)
T 3aji_A 86 -DEIVKALLVK--GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFY 161 (231)
T ss_dssp -HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred -HHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence 9999999999 9999999999999999999999999999999999995 99999999999999999999999999999
Q ss_pred CCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376 241 TGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT 278 (289)
Q Consensus 241 g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~ 278 (289)
|++++ ..+..|.||||+|+..|+.++..
T Consensus 162 g~~~~----------~~~~~g~t~L~~A~~~~~~~~v~ 189 (231)
T 3aji_A 162 KASTN----------IQDTEGNTPLHLACDEERVEEAK 189 (231)
T ss_dssp TCCSC----------CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CCCcc----------ccCCCCCCHHHHHHHCCCHHHHH
Confidence 99999 99999999999999999887543
No 31
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=6.4e-30 Score=222.96 Aligned_cols=207 Identities=16% Similarity=0.125 Sum_probs=177.6
Q ss_pred hhhhcCChhh-hhhcccCCCCccchhcccccc---HHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHH
Q 039376 56 KLVVGKKEDE-ITEMKPANDPIIEVKSHERQQ---IKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVE 128 (289)
Q Consensus 56 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~ 128 (289)
..++..+..+ +..++...+..++..+..+.+ .|+..++.+++++|+++|+++ |..|.||||+|+..|+.++++
T Consensus 29 ~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~ 108 (351)
T 3utm_A 29 LEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE 108 (351)
T ss_dssp HHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHH
Confidence 3334444443 445555566666666655544 588899999999999999987 568999999999999999999
Q ss_pred HHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC---------------------------
Q 039376 129 RFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD--------------------------- 181 (289)
Q Consensus 129 ~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~--------------------------- 181 (289)
+|++ .+++++.+ +..|.||||+|+..|+ .+++++|++. |++++..+
T Consensus 109 ~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~ 181 (351)
T 3utm_A 109 LLLK-HGACVNAM-DLWQFTPLHEAASKNR---VEVCSLLLSH--GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181 (351)
T ss_dssp HHHH-TTCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHH
T ss_pred HHHH-CCCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCccccCCCCcchHHHhhhhhHHHHHhhhcccH
Confidence 9999 58999998 9999999999999999 9999999999 88876544
Q ss_pred ---------------------------CCCCCHHHHHHHh---CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCH
Q 039376 182 ---------------------------TSGGTPLTSAAIV---GNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHR 231 (289)
Q Consensus 182 ---------------------------~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~ 231 (289)
..|.||||+|+.. +..+++++|++.|+++ +.++..|+||||+|+..|+.
T Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~ 260 (351)
T 3utm_A 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHN 260 (351)
T ss_dssp HHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCH
Confidence 4567999999998 5589999999999996 99999999999999999999
Q ss_pred HHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376 232 ETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN 280 (289)
Q Consensus 232 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~ 280 (289)
+++++|+++|++++ ..+..|.||||+|+..|+.++...+
T Consensus 261 ~~v~~Ll~~ga~~n----------~~d~~g~t~L~~A~~~~~~~~v~~L 299 (351)
T 3utm_A 261 DVMEVLHKHGAKMN----------ALDSLGQTALHRAALAGHLQTCRLL 299 (351)
T ss_dssp HHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHCCCCCC----------CcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 99999999999999 9999999999999999998854433
No 32
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.97 E-value=3.4e-30 Score=212.92 Aligned_cols=211 Identities=13% Similarity=0.096 Sum_probs=184.0
Q ss_pred hhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcCC-
Q 039376 30 SSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVD- 108 (289)
Q Consensus 30 ~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~- 108 (289)
....+...|..+++++|++.+.+...... ......+.++..++.+++++|+++|.+++
T Consensus 12 ~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~ 70 (240)
T 3eu9_A 12 DIVKATQYGIYERCRELVEAGYDVRQPDK---------------------ENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70 (240)
T ss_dssp CHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHcCChHHHHHHHHcCCCcCCCCC---------------------CCCCHHHHHHHhCCHHHHHHHHHcCCcchh
Confidence 35566778999999999998865432220 11123456788899999999999998763
Q ss_pred ---CCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCC
Q 039376 109 ---LGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGG 185 (289)
Q Consensus 109 ---~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~ 185 (289)
..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+ .+++++|++. |++++.++..|.
T Consensus 71 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~Ll~~--~~~~~~~~~~g~ 143 (240)
T 3eu9_A 71 LGGDLNSTPLHWATRQGHLSMVVQLMK-YGADPSLI-DGEGCSCIHLAAQFGH---TSIVAYLIAK--GQDVDMMDQNGM 143 (240)
T ss_dssp CBTTTTBCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSC
T ss_pred hcCCcCCChhHHHHHcCCHHHHHHHHH-cCCCCccc-CCCCCCHHHHHHHcCH---HHHHHHHHhc--CCCccccCCCCC
Confidence 358999999999999999999998 58999988 8999999999999999 9999999999 999999999999
Q ss_pred CHHHHHHHhCC-HHHHHHHHHcCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccch
Q 039376 186 TPLTSAAIVGN-TKAAKILVKYNKNLPNMRNR-IGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLK 263 (289)
Q Consensus 186 t~L~~A~~~g~-~~~v~~Ll~~g~~i~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~ 263 (289)
||||+|+..+. .+++++|++.|+++ +..+. .|+||||+|+..|+.+++++|+++|++++ ..+..|.|
T Consensus 144 t~l~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~g~t 212 (240)
T 3eu9_A 144 TPLMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD----------AQNIKGES 212 (240)
T ss_dssp CHHHHHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT----------CBCTTSCB
T ss_pred cHHHHHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC----------CcCCCCCC
Confidence 99999997776 78999999999996 88886 99999999999999999999999999999 99999999
Q ss_pred HHHHHHHhCCCCcccc
Q 039376 264 LLEILIEFNFLGQYTC 279 (289)
Q Consensus 264 ~l~~a~~~g~~~~~~~ 279 (289)
|+++|+..|+.++...
T Consensus 213 ~l~~A~~~~~~~~v~~ 228 (240)
T 3eu9_A 213 ALDLAKQRKNVWMINH 228 (240)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCcHHHHHH
Confidence 9999999998885443
No 33
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=4e-30 Score=220.06 Aligned_cols=194 Identities=21% Similarity=0.210 Sum_probs=125.2
Q ss_pred cCChhhhhhcccCCCCccchhcccccc---HHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhh
Q 039376 60 GKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISE 133 (289)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~ 133 (289)
..+..++++++...+++++..+..+.+ .|+..++.+++++|+++|+++ |..|.||||+|+..|+.+++++|++
T Consensus 49 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~- 127 (299)
T 1s70_B 49 SSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLIS- 127 (299)
T ss_dssp HHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-
T ss_pred HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-
Confidence 334444444444444444443333322 244445555555555555443 2344555555555555555555554
Q ss_pred CCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCcc--------------------------ccCCCCCCH
Q 039376 134 NPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLE--------------------------ETDTSGGTP 187 (289)
Q Consensus 134 ~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~--------------------------~~~~~g~t~ 187 (289)
.+++++.. +..|.||||+|+..++ .+++++++... +.+++ ..+..|.||
T Consensus 128 ~g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~ 202 (299)
T 1s70_B 128 QGAHVGAV-NSEGDTPLDIAEEEAM---EELLQNEVNRQ-GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTA 202 (299)
T ss_dssp TTCCTTCC-CTTSCCHHHHCCSHHH---HHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCH
T ss_pred CCCCCCCc-CCCCCCHHHHHHhcch---HHHHHHHHhhc-CCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCH
Confidence 34444444 4455555555555444 44444444322 22221 134568899
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHH
Q 039376 188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEI 267 (289)
Q Consensus 188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~ 267 (289)
||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++++ ..+..|.||+++
T Consensus 203 L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~----------~~d~~g~t~l~~ 271 (299)
T 1s70_B 203 LHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDME----------AVNKVGQTAFDV 271 (299)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCTTTS
T ss_pred HHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC----------CcCCCCCCHHHH
Confidence 99999999999999999999995 9999999999999999999999999999999999 888888888888
Q ss_pred HHH
Q 039376 268 LIE 270 (289)
Q Consensus 268 a~~ 270 (289)
|.+
T Consensus 272 A~~ 274 (299)
T 1s70_B 272 ADE 274 (299)
T ss_dssp CCS
T ss_pred HHH
Confidence 754
No 34
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.97 E-value=1e-29 Score=210.58 Aligned_cols=176 Identities=17% Similarity=0.146 Sum_probs=162.3
Q ss_pred ccHHHhcCCHHHHHHHHH----cCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcC
Q 039376 85 QQIKQVKTSEDWFREMVE----TGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANIN 157 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~----~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g 157 (289)
.+.|+..++.+++++|++ .|.++ |..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMAL-DRHGQTAAHLACEHR 90 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH-cCCCcccc-CCCCCCHHHHHHHcC
Confidence 345888999999999987 67766 5679999999999999999999999 68999998 999999999999999
Q ss_pred CchHHHHHHHHHhccCCC----CccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-CCCCCHHHHHHHcCCHH
Q 039376 158 EDEAHRLLDEFLDMISPL----DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRN-RIGQCPIHCAARSGHRE 232 (289)
Q Consensus 158 ~~~~~~~v~~Ll~~~~g~----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~-~~g~t~L~~A~~~~~~~ 232 (289)
+ .+++++|++. +. +++..+..|.||||+|+..|+.+++++|+++|+++ +..+ ..|+||||+|+..|+.+
T Consensus 91 ~---~~~~~~Ll~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~ 164 (241)
T 1k1a_A 91 S---PTCLRALLDS--AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLS 164 (241)
T ss_dssp C---HHHHHHHHHH--SCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHH
T ss_pred C---HHHHHHHHHc--CCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHH
Confidence 9 9999999998 66 78889999999999999999999999999999996 8888 88999999999999999
Q ss_pred HHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376 233 TVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT 278 (289)
Q Consensus 233 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~ 278 (289)
++++|+++|++++ ..+..|.||||+|+..|+.++..
T Consensus 165 ~v~~Ll~~g~~~~----------~~~~~g~t~L~~A~~~~~~~~v~ 200 (241)
T 1k1a_A 165 MVQLLLQHGANVN----------AQMYSGSSALHSASGRGLLPLVR 200 (241)
T ss_dssp HHHHHHHTTCCTT----------CBCTTSCBHHHHHHHHTCHHHHH
T ss_pred HHHHHHHcCCCCC----------CcCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999999999 99999999999999999987543
No 35
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.97 E-value=1e-29 Score=216.80 Aligned_cols=175 Identities=14% Similarity=0.128 Sum_probs=161.5
Q ss_pred ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376 85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA 161 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~ 161 (289)
.+.++..++.+++++|++.|+++ |..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+
T Consensus 63 L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-~~~g~t~L~~A~~~~~--- 137 (285)
T 3d9h_A 63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGV-TADWHTPLFNACVSGS--- 137 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCC-CTTCCCHHHHHHHHTC---
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcCH---
Confidence 34588899999999999999987 6689999999999999999999999 58999999 9999999999999999
Q ss_pred HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376 162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT 241 (289)
Q Consensus 162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 241 (289)
.+++++|++. |++++..+ .|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|
T Consensus 138 ~~~v~~Ll~~--g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 213 (285)
T 3d9h_A 138 WDCVNLLLQH--GASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESG 213 (285)
T ss_dssp HHHHHHHHHT--TCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHC--CCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCC
Confidence 9999999999 89887654 5999999999999999999999999996 999999999999999999999999999999
Q ss_pred CCcccccccCCCCcccccccchHHHHHHHhCCCCcccc
Q 039376 242 GVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTC 279 (289)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~ 279 (289)
++++ . +..|.||||+|+..|..++...
T Consensus 214 a~~~----------~-~~~g~t~L~~A~~~~~~~~v~~ 240 (285)
T 3d9h_A 214 ADVN----------Q-GKGQDSPLHAVVRTASEELACL 240 (285)
T ss_dssp CCTT----------C-CBTTBCHHHHHHHTTCHHHHHH
T ss_pred CCCC----------C-CCCCCCHHHHHHHcCCHHHHHH
Confidence 9987 5 7789999999999998875433
No 36
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=2.3e-31 Score=231.32 Aligned_cols=217 Identities=13% Similarity=0.110 Sum_probs=128.3
Q ss_pred CchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcCC----CCCch
Q 039376 38 NEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVD----LGEHP 113 (289)
Q Consensus 38 ~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~----~~g~t 113 (289)
|+.++|++|++.|.++..........-. .... ...-........+++......++++.|++.|+++| ..|.|
T Consensus 58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~--~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~T 133 (327)
T 1sw6_A 58 EQKMKLEAFLQRLLFPEIQEMPTSLNND--SSNR--NSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNT 133 (327)
T ss_dssp HHHHHHHHHHHHHHC-----------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCC
T ss_pred chhHHHHHHHHhccCCccccchHhhhcc--cccc--cccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCc
Confidence 8999999999999665442100000000 0000 00000000011123444444556666666665543 35666
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHH
Q 039376 114 QLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAI 193 (289)
Q Consensus 114 ~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~ 193 (289)
|||+|++.|+.++|++||+ .|++++.+ +..|+||||+|+..|+....++++.|++.. .++++.++..|+||||+|+.
T Consensus 134 pLh~Aa~~g~~~~v~~Ll~-~Gad~n~~-d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~-~~~~~~~d~~g~tpLh~A~~ 210 (327)
T 1sw6_A 134 PLHWLTSIANLELVKHLVK-HGSNRLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYL-YPCLILEDSMNRTILHHIII 210 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHH-TTCCTTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHHHH-GGGGGEECTTCCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH-cCCCCCCc-CCCCCCHHHHHHHhcccccHHHHHHHHHhh-hccccCCCCCCCCHHHHHHH
Confidence 6666666666666666666 35666666 666666666666655411124444444441 24466666666666666666
Q ss_pred ----hCCHHHHHHHHHcCC---------------------------------------------CCCCCCCCCCCCHHHH
Q 039376 194 ----VGNTKAAKILVKYNK---------------------------------------------NLPNMRNRIGQCPIHC 224 (289)
Q Consensus 194 ----~g~~~~v~~Ll~~g~---------------------------------------------~i~~~~~~~g~t~L~~ 224 (289)
.|+.+++++|++.+. ++ +.++..|+||||+
T Consensus 211 ~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~-n~~d~~G~TpLh~ 289 (327)
T 1sw6_A 211 TSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML-NAQDSNGDTCLNI 289 (327)
T ss_dssp HHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTT-TCCCTTSCCHHHH
T ss_pred HccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCC-CCCCCCCCCHHHH
Confidence 566666666655421 43 7899999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhC
Q 039376 225 AARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFN 272 (289)
Q Consensus 225 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g 272 (289)
|+..|+.+++++|+++|++++ ..+..|+||||+|+.+|
T Consensus 290 A~~~g~~~~v~~Ll~~Gad~~----------~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 290 AARLGNISIVDALLDYGADPF----------IANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHCCHHHHHHHHHTTCCTT----------CCCTTSCCGGGGTCC--
T ss_pred HHHcCCHHHHHHHHHcCCCCc----------ccCCCCCCHHHHHHhcC
Confidence 999999999999999999999 99999999999998665
No 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=7e-30 Score=209.38 Aligned_cols=189 Identities=15% Similarity=0.106 Sum_probs=166.2
Q ss_pred CchhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCC-c
Q 039376 28 QPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGV-K 106 (289)
Q Consensus 28 ~~~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~-~ 106 (289)
.....++...|..+++++|++.+.++.... .......+.++..++.+++++|++++. +
T Consensus 26 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~---------------------~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~ 84 (223)
T 2f8y_A 26 ETALHLAARYSRSDAAKRLLEASADANIQD---------------------NMGRTPLHAAVSADAQGVFQILIRNRATD 84 (223)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCC---------------------TTSCCHHHHHHHTTCHHHHHHHHHBTTSC
T ss_pred CchHHHHHHcCCHHHHHHHHHcCCCCCCcC---------------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 345666778889999999998876543322 011223456788899999999999987 4
Q ss_pred C---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCC
Q 039376 107 V---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTS 183 (289)
Q Consensus 107 ~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~ 183 (289)
+ +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+ .+++++|++. |++++.++..
T Consensus 85 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~ 157 (223)
T 2f8y_A 85 LDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAV-DDLGKSALHWAAAVNN---VDAAVVLLKN--GANKDMQNNR 157 (223)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCB-CTTSCBHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTT
T ss_pred cccCCCCCCcHHHHHHHhCcHHHHHHHHH-cCCCCcCc-CCCCCcHHHHHHHcCC---HHHHHHHHHc--CCCCCCcCCC
Confidence 4 5689999999999999999999999 68999998 9999999999999999 9999999999 9999999999
Q ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE 245 (289)
Q Consensus 184 g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 245 (289)
|.||||+|+..|+.+++++|+++|+++ +.++..|+||+++|+..++.+++++|+++|+...
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 999999999999999999999999995 9999999999999999999999999999999865
No 38
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=2.8e-30 Score=207.24 Aligned_cols=153 Identities=22% Similarity=0.204 Sum_probs=145.8
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376 108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP 187 (289)
Q Consensus 108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~ 187 (289)
|..|.||||+|+..|+.+++++|++. +++++.+ +..|.||||+|+..|+ .+++++|++. |++++.++..|.||
T Consensus 32 d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~ 104 (192)
T 2rfm_A 32 DSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDK-DIEGSTALIWAVKNNR---LGIAEKLLSK--GSNVNTKDFSGKTP 104 (192)
T ss_dssp CTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHH--TCCTTCCCTTSCCH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccc-cccCccHHHHHHHcCC---HHHHHHHHHC--CCCCCCCCCCCCcH
Confidence 77899999999999999999999995 7888888 8999999999999999 9999999999 99999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHH
Q 039376 188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEI 267 (289)
Q Consensus 188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~ 267 (289)
||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++ ..+..|.||+++
T Consensus 105 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~l~~ 173 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADIS----------ARDLTGLTAEAS 173 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CBCTTSCBHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------CcCCCCCCHHHH
Confidence 99999999999999999999995 9999999999999999999999999999999999 999999999999
Q ss_pred HHHhCCCCccc
Q 039376 268 LIEFNFLGQYT 278 (289)
Q Consensus 268 a~~~g~~~~~~ 278 (289)
|+..|+.++..
T Consensus 174 A~~~~~~~~v~ 184 (192)
T 2rfm_A 174 ARIFGRQEVIK 184 (192)
T ss_dssp HHHTTCHHHHH
T ss_pred HHHhCcHHHHH
Confidence 99999887543
No 39
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=5.8e-30 Score=200.78 Aligned_cols=150 Identities=14% Similarity=0.168 Sum_probs=129.8
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHH
Q 039376 110 GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLT 189 (289)
Q Consensus 110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~ 189 (289)
.|.||||+|++.|+.+++++|++. +.+++.+ +..|.||||+|+..|+ .+++++|++. |++++..+..|.||||
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~ 74 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHT-DEEGFTPLMWAAAHGQ---IAVVEFLLQN--GADPQLLGKGRESALS 74 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTCCCHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCC-CCCCCCHHHHHHHCCC---HHHHHHHHHc--CCCCCCcCCCCCcHHH
Confidence 467889999999999999888885 6778887 8888899999998888 8899998888 8888888888889999
Q ss_pred HHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHH
Q 039376 190 SAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILI 269 (289)
Q Consensus 190 ~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~ 269 (289)
+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++ ..+..|.||+++|+
T Consensus 75 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~g~t~l~~A~ 143 (167)
T 3v31_A 75 LACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT----------IETDSGYNSMDLAV 143 (167)
T ss_dssp HHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------CcCCCCCCHHHHHH
Confidence 999888888999999888885 8888888899999998889999999998888888 88888889999988
Q ss_pred HhCCCCcc
Q 039376 270 EFNFLGQY 277 (289)
Q Consensus 270 ~~g~~~~~ 277 (289)
..|+.++.
T Consensus 144 ~~~~~~~~ 151 (167)
T 3v31_A 144 ALGYRSVQ 151 (167)
T ss_dssp HHTCHHHH
T ss_pred HcCcHHHH
Confidence 88887743
No 40
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.8e-30 Score=217.66 Aligned_cols=178 Identities=15% Similarity=0.093 Sum_probs=141.3
Q ss_pred ccHHHhcCCHHHHHHHHHcCCcC-----------CCCCchHHHHHHHcCCHH-HHHHHHhhCCCCcccccCCCCChHHHH
Q 039376 85 QQIKQVKTSEDWFREMVETGVKV-----------DLGEHPQLRRALVRKDWK-EVERFISENPDTLYAKFTESCGTLFHS 152 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~~~-----------~~~g~t~Lh~A~~~g~~~-~v~~ll~~~~~~~~~~~~~~~~t~Lh~ 152 (289)
...|+..|+.+++++|++.|.+. +..|.||||+|+..+..+ ++++|+. .|++++.+ +..|+||||+
T Consensus 15 L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~-~Gadvn~~-d~~G~TpLh~ 92 (269)
T 4b93_B 15 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA-SGLGVNVT-SQDGSSPLHV 92 (269)
T ss_dssp HHHHHHTTCHHHHHHHHTCC-----------------------------------------CCCCTTCC-CTTSCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHH-CCCCCCCc-CCCCCCHHHH
Confidence 34588899999999999988742 446889999999988764 6777787 69999999 9999999999
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 039376 153 MANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRE 232 (289)
Q Consensus 153 A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~ 232 (289)
|+..|+ .+++++|++. +++++.++..|.||+++|+..++.+++++|++.|+++ +.+|..|+||||+|+..|+.+
T Consensus 93 A~~~g~---~~~v~~Ll~~--~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~ 166 (269)
T 4b93_B 93 AALHGR---ADLIPLLLKH--GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHE 166 (269)
T ss_dssp HHHTTC---TTHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGG
T ss_pred HHHcCc---HHHHHHHHhc--CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHH
Confidence 999999 9999999999 9999999999999999999999999999999999995 999999999999999999999
Q ss_pred HHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376 233 TVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN 280 (289)
Q Consensus 233 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~ 280 (289)
++++|+++|++++ ..+..|.||||+|+..|+.++...+
T Consensus 167 ~v~~Ll~~gadvn----------~~~~~g~t~Lh~A~~~g~~~~v~~L 204 (269)
T 4b93_B 167 LVALLLQHGASIN----------ASNNKGNTALHEAVIEKHVFVVELL 204 (269)
T ss_dssp GHHHHHHTTCCTT----------CBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHCCCCCC----------ccccCCCcHHHHHHHcCCHHHHHHH
Confidence 9999999999999 9999999999999999998854443
No 41
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=2e-30 Score=217.40 Aligned_cols=177 Identities=11% Similarity=0.069 Sum_probs=155.5
Q ss_pred cHHHhcCCHH----HHHHHHHcCCcCC-------CCCchHHHHHHHc---CCHHHHHHHHhhCCCCcccc----------
Q 039376 86 QIKQVKTSED----WFREMVETGVKVD-------LGEHPQLRRALVR---KDWKEVERFISENPDTLYAK---------- 141 (289)
Q Consensus 86 ~~~~~~~~~~----~~~~Ll~~g~~~~-------~~g~t~Lh~A~~~---g~~~~v~~ll~~~~~~~~~~---------- 141 (289)
+.|+..++.+ ++++|++.|++++ ..|.||||+|+.. |+.+++++|++. +++++..
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HHHTTCSSCGGGCCCCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc-CCcccchhhhccccccc
Confidence 4466667775 5677778888754 4899999999999 999999999984 5555422
Q ss_pred cCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCC-------------CCCHHHHHHHhCCHHHHHHHHH---
Q 039376 142 FTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTS-------------GGTPLTSAAIVGNTKAAKILVK--- 205 (289)
Q Consensus 142 ~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~-------------g~t~L~~A~~~g~~~~v~~Ll~--- 205 (289)
.+..|.||||+|+..|+ .+++++|++. |++++.++.. |.||||+|+..|+.+++++|++
T Consensus 86 ~d~~g~t~L~~A~~~g~---~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 86 EFYQGHSALHIAIEKRS---LQCVKLLVEN--GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp TTTTTCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred ccccCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 03679999999999999 9999999999 9999999886 9999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCHHHHHHH--cCCHH-------HHHHHHhcCCCc-------ccccccCCCCcccccccchHHHHHH
Q 039376 206 YNKNLPNMRNRIGQCPIHCAAR--SGHRE-------TVEYLLSVTGVE-------EEDSHEKYSNPFAGECGLKLLEILI 269 (289)
Q Consensus 206 ~g~~i~~~~~~~g~t~L~~A~~--~~~~~-------~~~~Ll~~g~~~-------~~~~~~~~~~~~~~~~g~~~l~~a~ 269 (289)
+|+++ +.+|..|+||||+|+. .++.+ ++++|+++|+++ + ..+..|.||||+|+
T Consensus 161 ~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~----------~~d~~g~tpL~~A~ 229 (256)
T 2etb_A 161 QPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE----------ISNHQGLTPLKLAA 229 (256)
T ss_dssp CCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGG----------CCCTTSCCHHHHHH
T ss_pred cCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccc----------ccCCCCCCHHHHHH
Confidence 99995 9999999999999999 88988 999999999999 7 89999999999999
Q ss_pred HhCCCCcccc
Q 039376 270 EFNFLGQYTC 279 (289)
Q Consensus 270 ~~g~~~~~~~ 279 (289)
..|+.++...
T Consensus 230 ~~g~~~~v~~ 239 (256)
T 2etb_A 230 KEGKIEIFRH 239 (256)
T ss_dssp HTTCHHHHHH
T ss_pred HhCCHHHHHH
Confidence 9999885443
No 42
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=218.51 Aligned_cols=181 Identities=14% Similarity=0.173 Sum_probs=163.1
Q ss_pred ccccHHHhcCCHHHHHHHHHcCCc-----CCCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHH---
Q 039376 83 ERQQIKQVKTSEDWFREMVETGVK-----VDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMA--- 154 (289)
Q Consensus 83 ~~~~~~~~~~~~~~~~~Ll~~g~~-----~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~--- 154 (289)
...+.+...++.+.++.+++.+.+ .|..|.||||+|++.|+.+++++|++.+..+++.. +..|.||||+|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ-NRAGYSPIMLTALAT 156 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC-CTTSCCHHHHGGGCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC-CCCCCCHHHHHHHHH
Confidence 344678888888888888776554 27799999999999999999999999543488888 999999999999
Q ss_pred --hcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 039376 155 --NINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRE 232 (289)
Q Consensus 155 --~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~ 232 (289)
..++ .+++++|++. |...+..+..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+
T Consensus 157 ~~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~ 230 (276)
T 4hbd_A 157 LKTQDD---IETVLQLFRL--GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKE 230 (276)
T ss_dssp CCSHHH---HHHHHHHHHH--SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHH
T ss_pred hhhhhh---HHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHH
Confidence 5577 9999999999 8999999999999999999999999999999999995 999999999999999999999
Q ss_pred HHHHHHh-cCCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376 233 TVEYLLS-VTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN 280 (289)
Q Consensus 233 ~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~ 280 (289)
++++|++ +|++++ ..+..|.|||++|+..|+.++...+
T Consensus 231 iv~~Ll~~~gad~~----------~~d~~g~TpL~~A~~~g~~~iv~~L 269 (276)
T 4hbd_A 231 IAGLLLAVPSCDIS----------LTDRDGSTALMVALDAGQSEIASML 269 (276)
T ss_dssp HHHHHHTSTTCCTT----------CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhcCCCCCc----------CcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9999999 999999 9999999999999999998865544
No 43
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=2.1e-29 Score=198.14 Aligned_cols=151 Identities=25% Similarity=0.256 Sum_probs=120.9
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHH
Q 039376 109 LGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPL 188 (289)
Q Consensus 109 ~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L 188 (289)
..+.++|++|++.|+.+++++|++ .+.+++.+ +..|.||||+|+..|+ .+++++|++. |++++.++..|.|||
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~L 84 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMA-NGADVNAE-DASGWTPLHLAAFNGH---LEIVEVLLKN--GADVNAVDHAGMTPL 84 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred CcccchHHHHHHcCCHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCccCCCCCCHH
Confidence 355678888888888888888887 47777777 7788888888888888 8888888887 788888888888888
Q ss_pred HHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHH
Q 039376 189 TSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEIL 268 (289)
Q Consensus 189 ~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a 268 (289)
|+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++ ..+..|.||+++|
T Consensus 85 ~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~g~t~l~~A 153 (169)
T 2y1l_E 85 RLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN----------AQDKFGKTAFDIS 153 (169)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------CcCCCCCCHHHHH
Confidence 8888888888888888888885 7788888888888888888888888888888887 7777888888888
Q ss_pred HHhCCCCcc
Q 039376 269 IEFNFLGQY 277 (289)
Q Consensus 269 ~~~g~~~~~ 277 (289)
+..|+.++.
T Consensus 154 ~~~~~~~~~ 162 (169)
T 2y1l_E 154 IDNGNEDLA 162 (169)
T ss_dssp HHTTCHHHH
T ss_pred HHhCCHHHH
Confidence 888776643
No 44
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=2e-29 Score=198.71 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=103.9
Q ss_pred cHHHhcCCHHHHHHHHHcCCc-C---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376 86 QIKQVKTSEDWFREMVETGVK-V---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA 161 (289)
Q Consensus 86 ~~~~~~~~~~~~~~Ll~~g~~-~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~ 161 (289)
+.++..++.++++.|++.+.. + +..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..|+
T Consensus 7 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~--- 81 (172)
T 3v30_A 7 HQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE-WGADPHIL-AKERESALSLASTGGY--- 81 (172)
T ss_dssp HHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCC-CTTCCCHHHHHHHTTC---
T ss_pred HHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCchhh-cccCCCHHHHHHHCCC---
Confidence 345666667777777766654 2 4566677777777777777777666 36666666 6667777777777777
Q ss_pred HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376 162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT 241 (289)
Q Consensus 162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 241 (289)
.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|
T Consensus 82 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 82 TDIVGLLLER--DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp HHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 7777777766 6677766777777777777777777777777777764 666677777777777777777777777777
Q ss_pred CCcc
Q 039376 242 GVEE 245 (289)
Q Consensus 242 ~~~~ 245 (289)
++..
T Consensus 159 ~~~~ 162 (172)
T 3v30_A 159 LKLF 162 (172)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 6665
No 45
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=7.3e-31 Score=217.38 Aligned_cols=182 Identities=15% Similarity=0.136 Sum_probs=105.2
Q ss_pred hhhhhcCChhhhhhcccCCCC----ccchhcccccc---HHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCH
Q 039376 55 SKLVVGKKEDEITEMKPANDP----IIEVKSHERQQ---IKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDW 124 (289)
Q Consensus 55 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~ 124 (289)
...++..+..+++..++..+. .++..+..+.+ .++..++.+++++|+++|+++ +..|.||||+|++.|+.
T Consensus 12 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 91 (236)
T 1ikn_D 12 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL 91 (236)
T ss_dssp THHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred hHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 344444555555555544332 34444333333 355556666666666666654 34566666666666666
Q ss_pred HHHHHHHhhCCCC------cccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCC-CCCCHHHHHHHhCCH
Q 039376 125 KEVERFISENPDT------LYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDT-SGGTPLTSAAIVGNT 197 (289)
Q Consensus 125 ~~v~~ll~~~~~~------~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~-~g~t~L~~A~~~g~~ 197 (289)
+++++|++. +.+ ++.. +..|.||||+|+..|+ .+++++|++. |++++.++. .|.||||+|+..|+.
T Consensus 92 ~~v~~Ll~~-~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~A~~~~~~ 164 (236)
T 1ikn_D 92 ASVGVLTQS-CTTPHLHSILKAT-NYNGHTCLHLASIHGY---LGIVELLVSL--GADVNAQEPCNGRTALHLAVDLQNP 164 (236)
T ss_dssp HHHHHHHHS-TTTTSSSCGGGCC-CTTCCCHHHHHHHTTC---HHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred HHHHHHHhc-ccchhHHHHhhcc-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 666666653 322 2333 5556666666666666 6666666666 666666665 666666666666666
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCc
Q 039376 198 KAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVE 244 (289)
Q Consensus 198 ~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 244 (289)
+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++.
T Consensus 165 ~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 210 (236)
T 1ikn_D 165 DLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 210 (236)
T ss_dssp HHHHHHHTTTCCS-CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHcCCCC-CcccCCCCCHHHHHHccCchHHHHHHHHcchhh
Confidence 6666666666663 666666666666666666666666666666654
No 46
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=2.4e-29 Score=194.49 Aligned_cols=147 Identities=17% Similarity=0.170 Sum_probs=132.9
Q ss_pred chHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHH
Q 039376 112 HPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSA 191 (289)
Q Consensus 112 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A 191 (289)
.++||.|++.|+.+++++|++. +.+++ . +..|.||||+|+..|+ .+++++|++. |++++.++..|+||||+|
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 74 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMAN-GAPFT-T-DWLGTSPLHLAAQYGH---FSTTEVLLRA--GVSRDARTKVDRTPLHMA 74 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH-TCCCC-C-CTTCCCHHHHHHHHTC---HHHHHHHHTT--TCCTTCCCTTCCCHHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHc-CCCCC-c-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCCCCCCCCCHHHHH
Confidence 5799999999999999999985 56554 4 7789999999999999 9999999998 899999999999999999
Q ss_pred HHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHh
Q 039376 192 AIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEF 271 (289)
Q Consensus 192 ~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~ 271 (289)
+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++ ..+..|.||+++|+..
T Consensus 75 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~l~~A~~~ 143 (153)
T 1awc_B 75 ASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVH----------TQSKFCKTAFDISIDN 143 (153)
T ss_dssp HHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHT
T ss_pred HHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc----------ccCCCCCCHHHHHHHc
Confidence 9999999999999999995 8999999999999999999999999999999998 8899999999999999
Q ss_pred CCCCcc
Q 039376 272 NFLGQY 277 (289)
Q Consensus 272 g~~~~~ 277 (289)
|+.++.
T Consensus 144 ~~~~i~ 149 (153)
T 1awc_B 144 GNEDLA 149 (153)
T ss_dssp TCHHHH
T ss_pred CCHHHH
Confidence 987753
No 47
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=3.7e-29 Score=197.12 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=136.0
Q ss_pred CchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHH
Q 039376 111 EHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTS 190 (289)
Q Consensus 111 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~ 190 (289)
+.||||.|++.|+.+++++|++.+...++.+ +..|.||||+|+..|+ .+++++|++. |++++.++..|.||||+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 75 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGE---IETVRFLLEW--GADPHILAKERESALSL 75 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-CTTSCCHHHHHHHTTC---HHHHHHHHHH--TCCTTCCCTTCCCHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCC-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCchhhcccCCCHHHH
Confidence 4689999999999999999999655557777 8999999999999999 9999999999 99999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc-cccccCCCCcc-cccccchHHHHH
Q 039376 191 AAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE-EDSHEKYSNPF-AGECGLKLLEIL 268 (289)
Q Consensus 191 A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~~~~~-~~~~g~~~l~~a 268 (289)
|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++ .+....+++.. ........+.++
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 154 (172)
T 3v30_A 76 ASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154 (172)
T ss_dssp HHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHH
Confidence 99999999999999999996 9999999999999999999999999999999999 55566666643 333445666676
Q ss_pred HHhC
Q 039376 269 IEFN 272 (289)
Q Consensus 269 ~~~g 272 (289)
...|
T Consensus 155 ~~~~ 158 (172)
T 3v30_A 155 ENHI 158 (172)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 48
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=4.8e-29 Score=194.38 Aligned_cols=151 Identities=18% Similarity=0.177 Sum_probs=140.5
Q ss_pred ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376 85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA 161 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~ 161 (289)
.+.++..++.+++++|+++|+++ +..|.||||+|+. |+.+++++|++ .+++++.+ +..|.||||+|+..|+
T Consensus 9 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~--- 82 (162)
T 1ihb_A 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLK-DRTGFAVIHDAARAGF--- 82 (162)
T ss_dssp HHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHHTC---
T ss_pred HHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCC---
Confidence 34688889999999999999887 5689999999999 99999999999 58999998 9999999999999999
Q ss_pred HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376 162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT 241 (289)
Q Consensus 162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 241 (289)
.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|++..+..+..|+||||+|+..|+.+++++|+++|
T Consensus 83 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 83 LDTLQTLLEF--QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160 (162)
T ss_dssp HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence 9999999999 99999999999999999999999999999999999844899999999999999999999999999999
Q ss_pred CC
Q 039376 242 GV 243 (289)
Q Consensus 242 ~~ 243 (289)
++
T Consensus 161 Ad 162 (162)
T 1ihb_A 161 AG 162 (162)
T ss_dssp --
T ss_pred CC
Confidence 86
No 49
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=1.7e-28 Score=197.91 Aligned_cols=184 Identities=13% Similarity=0.123 Sum_probs=159.7
Q ss_pred hhhhhhcCCchHHHHHHHhccC-CCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcC-
Q 039376 30 SSRLLDSKNEDEIVKMKQKDFA-QPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKV- 107 (289)
Q Consensus 30 ~~~~~~~~~~~~iv~~L~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~- 107 (289)
....+...|..+++++|+..+. +..... .......+.++..++.+++++|+++|+++
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~---------------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 8 ALLEAANQRDTKKVKEILQDTTYQVDEVD---------------------TEGNTPLNIAVHNNDIEIAKALIDRGADIN 66 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHTCTTCCTTCCC---------------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHhccHHHHHHHHHcCCCCCCCCC---------------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 4555667788888888887664 221111 01122345688889999999999999987
Q ss_pred --CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCC-CCccccCCCC
Q 039376 108 --DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP-LDLEETDTSG 184 (289)
Q Consensus 108 --~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g-~~~~~~~~~g 184 (289)
+..|.||||+|+..|+.+++++|++..+.+++.+ +..|.||||+|+..|+ .+++++|++. | ++++.++..|
T Consensus 67 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~~g 140 (201)
T 3hra_A 67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH-NRYGGNALIPAAEKGH---IDNVKLLLED--GREDIDFQNDFG 140 (201)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC-CTTSCCSHHHHHHTTC---HHHHHHHHHH--CCCCTTCCCTTS
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccc-cCCCCcHHHHHHHcCC---HHHHHHHHHc--CCCCcCCCCCCC
Confidence 5578999999999999999999997788899988 9999999999999999 9999999999 7 8999999999
Q ss_pred CCHHHHHHHhCC-----HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376 185 GTPLTSAAIVGN-----TKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT 241 (289)
Q Consensus 185 ~t~L~~A~~~g~-----~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 241 (289)
.||||+|+..+. .+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|
T Consensus 141 ~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 141 YTALIEAVGLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp CCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CCHHHHHHHhccchhhHHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 999999999998 99999999999995 999999999999999999999999999987
No 50
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=2.5e-28 Score=192.04 Aligned_cols=149 Identities=20% Similarity=0.283 Sum_probs=140.6
Q ss_pred ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376 85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA 161 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~ 161 (289)
.+.|+..++.+++++|+++|+++ |..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..|+
T Consensus 18 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~--- 92 (169)
T 2y1l_E 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAV-DHAGMTPLRLAALFGH--- 92 (169)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-CCCCCCHHHHHHHcCC---
Confidence 34588999999999999999987 5689999999999999999999999 58999998 9999999999999999
Q ss_pred HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376 162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT 241 (289)
Q Consensus 162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 241 (289)
.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|
T Consensus 93 ~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 93 LEIVEVLLKN--GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 9999999999 9999999999999999999999999999999999995 999999999999999999999999999886
No 51
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=6.3e-30 Score=214.71 Aligned_cols=183 Identities=13% Similarity=0.115 Sum_probs=152.8
Q ss_pred cHHHhcCCHHH----HHHHHHcCCcCC-------CCCchHHHHHH---HcCCHHHHHHHHhhCCCC-----------ccc
Q 039376 86 QIKQVKTSEDW----FREMVETGVKVD-------LGEHPQLRRAL---VRKDWKEVERFISENPDT-----------LYA 140 (289)
Q Consensus 86 ~~~~~~~~~~~----~~~Ll~~g~~~~-------~~g~t~Lh~A~---~~g~~~~v~~ll~~~~~~-----------~~~ 140 (289)
+.++..++.+. +++|++.|++++ ..|.||||+|+ +.|+.+++++|++. +++ ...
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI-AEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH-HHHTTCHHHHHTCCBCC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh-cccccchHhhhcccccc
Confidence 44666777774 455555888774 56999999999 78999999999985 432 333
Q ss_pred ccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC--------------CCCCCHHHHHHHhCCHHHHHHHHH-
Q 039376 141 KFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD--------------TSGGTPLTSAAIVGNTKAAKILVK- 205 (289)
Q Consensus 141 ~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~--------------~~g~t~L~~A~~~g~~~~v~~Ll~- 205 (289)
. +..|.||||+|+..|+ .+++++|++. |++++.++ ..|.||||+|+..|+.+++++|++
T Consensus 89 ~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 162 (260)
T 3jxi_A 89 V-YYRGQTALHIAIERRC---KHYVELLVEK--GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162 (260)
T ss_dssp S-SEESBCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred c-ccCCCCHHHHHHHcCC---HHHHHHHHhC--CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 3 4589999999999999 9999999999 99999998 689999999999999999999999
Q ss_pred --cCCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCC
Q 039376 206 --YNKNLPNMRNRIGQCPIHCAARSGH---------RETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFL 274 (289)
Q Consensus 206 --~g~~i~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~ 274 (289)
+|+++ +.+|..|+||||+|+..++ .+++++|+++|++++... ......+..|.||||+|+..|+.
T Consensus 163 ~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~---~~~~~~d~~g~tpL~~A~~~g~~ 238 (260)
T 3jxi_A 163 GHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT---NLEALLNNDGLSPLMMAAKTGKI 238 (260)
T ss_dssp SSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTC---CGGGCCCTTSCCHHHHHHHTTCH
T ss_pred cccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccccccc---chhhcccCCCCCHHHHHHHcCCH
Confidence 99995 9999999999999998887 799999999999983000 00017899999999999999998
Q ss_pred Ccccc
Q 039376 275 GQYTC 279 (289)
Q Consensus 275 ~~~~~ 279 (289)
++...
T Consensus 239 ~~v~~ 243 (260)
T 3jxi_A 239 GIFQH 243 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 85443
No 52
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=9.6e-30 Score=199.12 Aligned_cols=151 Identities=21% Similarity=0.209 Sum_probs=133.1
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376 108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP 187 (289)
Q Consensus 108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~ 187 (289)
|..|.||||.|++.|+.+++++|++..+.+++.. +..|.||||+|+..|+ .+++++|++. |++++.++..|+||
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~ 78 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNR---VSVVEYLLQH--GADVHAKDKGGLVP 78 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcCh---HHHHHHHHhc--CCCCCccCCCCCCH
Confidence 5677899999999999999999988766677776 7888999999999999 9999999998 89999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHH
Q 039376 188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEI 267 (289)
Q Consensus 188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~ 267 (289)
||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++ ..+..|.||+++
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~l~~ 147 (165)
T 3twr_A 79 LHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT----------KKNRDGNTPLDL 147 (165)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCTGGG
T ss_pred HHHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc----------ccCCCCCChhHh
Confidence 99999999999999999999995 8999999999999999999999999999999998 888888888888
Q ss_pred HHHhCCCCc
Q 039376 268 LIEFNFLGQ 276 (289)
Q Consensus 268 a~~~g~~~~ 276 (289)
|.. |..++
T Consensus 148 a~~-~~~~i 155 (165)
T 3twr_A 148 VKD-GDTDI 155 (165)
T ss_dssp SCT-TCHHH
T ss_pred Hhc-CChHH
Confidence 765 55554
No 53
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.96 E-value=4.5e-29 Score=212.76 Aligned_cols=203 Identities=12% Similarity=0.048 Sum_probs=163.0
Q ss_pred hhhhcCChhhhhhcccCCCCccchhc-cccccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHH
Q 039376 56 KLVVGKKEDEITEMKPANDPIIEVKS-HERQQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFI 131 (289)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll 131 (289)
..++..+..++++++...+++++..+ ....+.|+..++.+++++|+++|+++ |..|.||||+|+..|+.+++++|+
T Consensus 36 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll 115 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFV 115 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 33444444444444444444443332 12334577889999999999999987 568999999999999999999999
Q ss_pred hhCCCCcccccCCCC-ChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Q 039376 132 SENPDTLYAKFTESC-GTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNL 210 (289)
Q Consensus 132 ~~~~~~~~~~~~~~~-~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i 210 (289)
+. +++++.+ +..| .||||+|+..|+ .+++++|++. |++.... ..|.||||+|+..|+.+++++|+++|+++
T Consensus 116 ~~-ga~~~~~-~~~g~~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~ 187 (285)
T 3kea_A 116 KK-NWRLMFY-GKTGWKTSFYHAVMLND---VSIVSYFLSE--IPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTST 187 (285)
T ss_dssp HH-CGGGGGC-SSSGGGSHHHHHHHTTC---HHHHHHHHTT--SCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hc-CCCCCcc-CCCCCCCHHHHHHHcCC---HHHHHHHHhC--CCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCC
Confidence 95 8999998 8888 899999999999 9999999999 7766322 28899999999999999999999999995
Q ss_pred CCCCCCCCCCH-HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhC
Q 039376 211 PNMRNRIGQCP-IHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFN 272 (289)
Q Consensus 211 ~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g 272 (289)
+.++..|+|| ||+|+..|+.+++++|+++|++++.... ..........+.+++++|
T Consensus 188 -n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~g 244 (285)
T 3kea_A 188 -NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEKH 244 (285)
T ss_dssp -CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHHH
T ss_pred -CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHcC
Confidence 9999999998 9999999999999999999999981111 122334567777777776
No 54
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.96 E-value=2.2e-29 Score=221.67 Aligned_cols=214 Identities=13% Similarity=0.046 Sum_probs=175.3
Q ss_pred CchhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHc----
Q 039376 28 QPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVET---- 103 (289)
Q Consensus 28 ~~~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~---- 103 (289)
.....++...|+.++|++|++.++..... ......+.++..++.+++++|++.
T Consensus 54 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-----------------------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~ 110 (364)
T 3ljn_A 54 CTALHLACKFGCVDTAKYLASVGEVHSLW-----------------------HGQKPIHLAVMANKTDLVVALVEGAKER 110 (364)
T ss_dssp CCHHHHHHHHCCHHHHHHHHHHCCCCCCB-----------------------TTBCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCcccc-----------------------CCCCHHHHHHHcCCHHHHHHHHHhcccc
Confidence 34567778889999999999998733221 012334568888999999999998
Q ss_pred CCcC--------------------CCCCchHHHHHHHcC--CHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376 104 GVKV--------------------DLGEHPQLRRALVRK--DWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA 161 (289)
Q Consensus 104 g~~~--------------------~~~g~t~Lh~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~ 161 (289)
|+++ +..|.||||+|+..| +.+++++|++. +++++.+ +..|.||||+|+..|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~-d~~g~t~L~~A~~~g~--- 185 (364)
T 3ljn_A 111 GQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAK-DKADETPLMRAMEFRN--- 185 (364)
T ss_dssp TCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHTTC---
T ss_pred CCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCC---
Confidence 6543 337999999999999 99999999995 8999999 9999999999999999
Q ss_pred HHHHHHHHhccCCCC-----ccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q 039376 162 HRLLDEFLDMISPLD-----LEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEY 236 (289)
Q Consensus 162 ~~~v~~Ll~~~~g~~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~ 236 (289)
.+++++|++. |++ ++.++..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++
T Consensus 186 ~~~v~~Ll~~--g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~g~~~~v~~ 262 (364)
T 3ljn_A 186 REALDLMMDT--VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKE 262 (364)
T ss_dssp HHHHHHHHHH--CSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhc--ccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhChHHHHHH
Confidence 9999999998 888 9999999999999999999999999999999995 9999999999999999999999999
Q ss_pred HHhcCCCcc-ccc-ccCCCCcccccccchHHHHHHHhC
Q 039376 237 LLSVTGVEE-EDS-HEKYSNPFAGECGLKLLEILIEFN 272 (289)
Q Consensus 237 Ll~~g~~~~-~~~-~~~~~~~~~~~~g~~~l~~a~~~g 272 (289)
|+++|++++ ... .........+..++++++.|+..|
T Consensus 263 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~ 300 (364)
T 3ljn_A 263 LLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300 (364)
T ss_dssp HHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred HHHcCCchhhhcCcccCcccccccccccccchhhhhcc
Confidence 999998875 111 111111234455566654444443
No 55
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.96 E-value=1e-28 Score=203.72 Aligned_cols=150 Identities=19% Similarity=0.141 Sum_probs=140.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCc-----cccCCCC
Q 039376 110 GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDL-----EETDTSG 184 (289)
Q Consensus 110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~-----~~~~~~g 184 (289)
.|.||||+|++.|+.+++++|++..+.+++.+ +..|.||||+|+..|+ .+++++|++. |+++ +.++..|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~--~~~~~~~~~~~~~~~g 75 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDN---LEAAMVLMEA--APELVFEPMTSELYEG 75 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHH--CGGGGGCCCCSTTTTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CchhccccccccCCCC
Confidence 58999999999999999999999669999999 9999999999999999 9999999999 7776 6677899
Q ss_pred CCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC-------------CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccC
Q 039376 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNR-------------IGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEK 251 (289)
Q Consensus 185 ~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~-------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~ 251 (289)
.||||+|+..|+.+++++|+++|+++ +..+. .|+||||+|+..|+.+++++|+++|++++
T Consensus 76 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------ 148 (232)
T 2rfa_A 76 QTALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR------ 148 (232)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT------
T ss_pred cCHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC------
Confidence 99999999999999999999999995 77765 79999999999999999999999999999
Q ss_pred CCCcccccccchHHHHHHHhCCCCc
Q 039376 252 YSNPFAGECGLKLLEILIEFNFLGQ 276 (289)
Q Consensus 252 ~~~~~~~~~g~~~l~~a~~~g~~~~ 276 (289)
..+..|.||||+|+..|..++
T Consensus 149 ----~~d~~g~t~L~~A~~~~~~~~ 169 (232)
T 2rfa_A 149 ----AQDSLGNTVLHILILQPNKTF 169 (232)
T ss_dssp ----CCCTTSCCHHHHHHTCSCHHH
T ss_pred ----CCCCCCCCHHHHHHHcCChHH
Confidence 999999999999999998774
No 56
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=5.2e-29 Score=194.18 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=141.5
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHH
Q 039376 110 GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLT 189 (289)
Q Consensus 110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~ 189 (289)
...||||+|++.|+.+++++|++ .+.+++.+ +..|.||||+|+. |+ .+++++|++. |++++.++..|.||||
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-~~~g~t~L~~A~~-~~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~ 75 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQ-NNVNVNAQ-NGFGRTALQVMKL-GN---PEIARRLLLR--GANPDLKDRTGFAVIH 75 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCC-CTTSCCHHHHCCS-SC---HHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHh-CCCCcccc-CccCccHHHHHHc-Cc---HHHHHHHHHc--CCCCCCCCCCCCCHHH
Confidence 45799999999999999999998 68999988 9999999999999 99 9999999999 9999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-cccccccCCCCcccccccchHHHHH
Q 039376 190 SAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV-EEEDSHEKYSNPFAGECGLKLLEIL 268 (289)
Q Consensus 190 ~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~~g~~~l~~a 268 (289)
+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++ ++ ..+..|.|||++|
T Consensus 76 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------~~~~~g~t~l~~A 144 (162)
T 1ihb_A 76 DAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG----------HRNHKGDTACDLA 144 (162)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT----------CCCTTSCCHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC----------CcCCCCCcHHHHH
Confidence 999999999999999999995 99999999999999999999999999999998 47 8899999999999
Q ss_pred HHhCCCCcccc
Q 039376 269 IEFNFLGQYTC 279 (289)
Q Consensus 269 ~~~g~~~~~~~ 279 (289)
+..|+.++...
T Consensus 145 ~~~~~~~~~~~ 155 (162)
T 1ihb_A 145 RLYGRNEVVSL 155 (162)
T ss_dssp HHTTCHHHHHH
T ss_pred HHcCCHHHHHH
Confidence 99998875443
No 57
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=8.4e-29 Score=191.85 Aligned_cols=149 Identities=24% Similarity=0.267 Sum_probs=133.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHH
Q 039376 111 EHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTS 190 (289)
Q Consensus 111 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~ 190 (289)
|.||||+|++.|+.+++++|++..+.+++.. +..|.||||+ +..|+ .+++++|++. |++++.++..|.||||+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 74 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGS---TAIALELLKQ--GASPNVQDTSGTSPVHD 74 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTC---HHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCC---HHHHHHHHHC--CCCCCCcCCCCCCHHHH
Confidence 5689999999999999999998645578887 8889999999 88999 9999999998 89999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHH
Q 039376 191 AAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIE 270 (289)
Q Consensus 191 A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~ 270 (289)
|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++ ++++ ..+..|.|||++|+.
T Consensus 75 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~----------~~~~~g~t~l~~A~~ 142 (156)
T 1bd8_A 75 AARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH----------RRDARGLTPLELALQ 142 (156)
T ss_dssp HHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT----------CCCTTSCCHHHHHHH
T ss_pred HHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC----------CcCCCCCCHHHHHHH
Confidence 99999999999999999995 89999999999999999999999999988 8888 888999999999999
Q ss_pred hCCCCccc
Q 039376 271 FNFLGQYT 278 (289)
Q Consensus 271 ~g~~~~~~ 278 (289)
.|+.++..
T Consensus 143 ~~~~~~v~ 150 (156)
T 1bd8_A 143 RGAQDLVD 150 (156)
T ss_dssp SCCHHHHH
T ss_pred cCcHHHHH
Confidence 98877543
No 58
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=3e-29 Score=207.63 Aligned_cols=172 Identities=14% Similarity=0.085 Sum_probs=151.3
Q ss_pred ccHHHhcCCHHHHHHHHHcCC----cC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcC
Q 039376 85 QQIKQVKTSEDWFREMVETGV----KV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANIN 157 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~----~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g 157 (289)
.+.|+..++.++++.|++.+. ++ +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|
T Consensus 12 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~ 89 (236)
T 1ikn_D 12 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELR-DFRGNTPLHLACEQG 89 (236)
T ss_dssp THHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCC-CTTCCCHHHHHHHHT
T ss_pred hHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-CCCCCCHHHHHHHcC
Confidence 456777888888888887764 33 5679999999999999999999998 68999998 999999999999999
Q ss_pred CchHHHHHHHHHhccCCCC------ccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC-CCCCHHHHHHHcCC
Q 039376 158 EDEAHRLLDEFLDMISPLD------LEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNR-IGQCPIHCAARSGH 230 (289)
Q Consensus 158 ~~~~~~~v~~Ll~~~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~-~g~t~L~~A~~~~~ 230 (289)
+ .+++++|++. +.+ ++..+..|.||||+|+..|+.+++++|+++|+++ +.++. .|+||||+|+..|+
T Consensus 90 ~---~~~v~~Ll~~--~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~ 163 (236)
T 1ikn_D 90 C---LASVGVLTQS--CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQN 163 (236)
T ss_dssp C---HHHHHHHHHS--TTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTC
T ss_pred C---HHHHHHHHhc--ccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCC
Confidence 9 9999999998 665 5778889999999999999999999999999996 88887 99999999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCC
Q 039376 231 RETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFL 274 (289)
Q Consensus 231 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~ 274 (289)
.+++++|+++|++++ ..+..|.|||++|+..|+.
T Consensus 164 ~~~v~~Ll~~ga~~~----------~~~~~g~tpl~~A~~~~~~ 197 (236)
T 1ikn_D 164 PDLVSLLLKCGADVN----------RVTYQGYSPYQLTWGRPST 197 (236)
T ss_dssp HHHHHHHHTTTCCSC----------CCCTTCCCGGGGCTTSSCH
T ss_pred HHHHHHHHHcCCCCC----------cccCCCCCHHHHHHccCch
Confidence 999999999999999 7777788887777766653
No 59
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.96 E-value=2.4e-29 Score=222.46 Aligned_cols=196 Identities=18% Similarity=0.208 Sum_probs=165.8
Q ss_pred hhhhcccCCCCccchhc-ccccc---HHHhcCCHHHHHHHH--------HcCCcC---CCCCchHHHHHHHcCCHHHHHH
Q 039376 65 EITEMKPANDPIIEVKS-HERQQ---IKQVKTSEDWFREMV--------ETGVKV---DLGEHPQLRRALVRKDWKEVER 129 (289)
Q Consensus 65 ~~~~~l~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~Ll--------~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ 129 (289)
++++++.. ..++..+ ..+.+ .|+..++.+++++|+ +.|+++ |..|.||||+|+..|+.+++++
T Consensus 107 ~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~ 184 (373)
T 2fo1_E 107 AITEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 184 (373)
T ss_dssp CCCSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred hHHHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHH
Confidence 45555543 2344444 23333 466667766655554 889887 5689999999999999999999
Q ss_pred HHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCC---CCccccCCCCCCHHHHHHHhC---CHHHHHHH
Q 039376 130 FISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP---LDLEETDTSGGTPLTSAAIVG---NTKAAKIL 203 (289)
Q Consensus 130 ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g---~~~~~~~~~g~t~L~~A~~~g---~~~~v~~L 203 (289)
|++ .+++++.+ +..|.||||+|+..|+ .+++++|++. + ++++..+..|.||||+|+..+ +.+++++|
T Consensus 185 Ll~-~ga~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~--~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~L 257 (373)
T 2fo1_E 185 LMK-AGADPTIY-NKSERSALHQAAANRD---FGMMVYMLNS--TKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL 257 (373)
T ss_dssp HHH-TTCCSCCC-CTTCCCHHHHHHHTTC---HHHHHHHTTS--HHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHH
T ss_pred HHH-CCCCCccc-CCCCCCHHHHHHHCCC---HHHHHHHHhc--CccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHH
Confidence 999 68999998 9999999999999999 9999999998 6 789999999999999999998 89999999
Q ss_pred HHcCCCCCCC--------CCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCcccccccCCCCcccccccchHHHHHHHhCCC
Q 039376 204 VKYNKNLPNM--------RNRIGQCPIHCAARSGHRETVEYLLSVT-GVEEEDSHEKYSNPFAGECGLKLLEILIEFNFL 274 (289)
Q Consensus 204 l~~g~~i~~~--------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~ 274 (289)
+++|+++ +. .+..|+||||+|+..|+.+++++|+++| ++++ ..+..|.||||+|+..|+.
T Consensus 258 l~~g~~~-~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n----------~~d~~g~TpL~~A~~~g~~ 326 (373)
T 2fo1_E 258 VEKGAKV-DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD----------KQDEDGKTPIMLAAQEGRI 326 (373)
T ss_dssp HHHTCCS-SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT----------CCCTTCCCHHHHHHHHTCH
T ss_pred HHCCCCc-ccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc----------CcCCCCCCHHHHHHHcCCH
Confidence 9999995 65 5679999999999999999999999876 9999 9999999999999999998
Q ss_pred Cccccc
Q 039376 275 GQYTCN 280 (289)
Q Consensus 275 ~~~~~~ 280 (289)
++...+
T Consensus 327 ~iv~~L 332 (373)
T 2fo1_E 327 EVVMYL 332 (373)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 854443
No 60
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=2.9e-29 Score=212.26 Aligned_cols=183 Identities=12% Similarity=0.143 Sum_probs=154.2
Q ss_pred cHHHhcCCHHHHHHHHH----cCCcC-------CCCCchHHHHHHHc---CCHHHHHHHHhhCCCC-------ccc----
Q 039376 86 QIKQVKTSEDWFREMVE----TGVKV-------DLGEHPQLRRALVR---KDWKEVERFISENPDT-------LYA---- 140 (289)
Q Consensus 86 ~~~~~~~~~~~~~~Ll~----~g~~~-------~~~g~t~Lh~A~~~---g~~~~v~~ll~~~~~~-------~~~---- 140 (289)
+.|+..++.++++.|++ .++++ +..|.||||+|+.. |+.+++++|++. +++ ++.
T Consensus 18 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~i~~~~~~ 96 (273)
T 2pnn_A 18 FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV-ARKTDSLKQFVNASYTD 96 (273)
T ss_dssp HHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH-HHHTTCHHHHHTCCCCS
T ss_pred HHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh-hccccchhHHhhccccc
Confidence 45778888888877776 45443 56899999999987 999999999985 433 122
Q ss_pred ccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCC--------------CCCCHHHHHHHhCCHHHHHHHHH-
Q 039376 141 KFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDT--------------SGGTPLTSAAIVGNTKAAKILVK- 205 (289)
Q Consensus 141 ~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~--------------~g~t~L~~A~~~g~~~~v~~Ll~- 205 (289)
+ +..|.||||+|+..|+ .+++++|++. |++++.++. .|.||||+|+..|+.+++++|++
T Consensus 97 ~-d~~g~tpL~~A~~~g~---~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 170 (273)
T 2pnn_A 97 S-YYKGQTALHIAIERRN---MTLVTLLVEN--GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170 (273)
T ss_dssp T-TTTTCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHC
T ss_pred c-cCCCCCHHHHHHHcCC---HHHHHHHHHC--CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 3 5689999999999999 9999999999 999999987 79999999999999999999999
Q ss_pred --cCCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCC
Q 039376 206 --YNKNLPNMRNRIGQCPIHCAARSGH---------RETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFL 274 (289)
Q Consensus 206 --~g~~i~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~ 274 (289)
+|+++ +.++..|+||||+|+..|+ .+++++|+++|++++... ......+..|.||||+|+..|+.
T Consensus 171 ~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~---~~~~~~d~~g~TpL~~A~~~g~~ 246 (273)
T 2pnn_A 171 SWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL---KLEEITNRKGLTPLALAASSGKI 246 (273)
T ss_dssp SSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---CGGGCCCTTSCCHHHHHHHTTCH
T ss_pred ccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccc---ccccccCCCCCCHHHHHHHhChH
Confidence 99995 9999999999999999988 899999999999986000 00014888999999999999998
Q ss_pred Ccccc
Q 039376 275 GQYTC 279 (289)
Q Consensus 275 ~~~~~ 279 (289)
++...
T Consensus 247 ~iv~~ 251 (273)
T 2pnn_A 247 GVLAY 251 (273)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 85443
No 61
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=1e-27 Score=185.27 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=136.4
Q ss_pred cHHHhcCCHHHHHHHHHcCCcC--CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHH
Q 039376 86 QIKQVKTSEDWFREMVETGVKV--DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHR 163 (289)
Q Consensus 86 ~~~~~~~~~~~~~~Ll~~g~~~--~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~ 163 (289)
+.++..++.+++++|+++|+++ +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+ .+
T Consensus 7 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~ 81 (153)
T 1awc_B 7 LEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDAR-TKVDRTPLHMAASEGH---AN 81 (153)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCC-CTTCCCHHHHHHHHTC---HH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCh---HH
Confidence 4577889999999999999876 5679999999999999999999998 68999998 9999999999999999 99
Q ss_pred HHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 039376 164 LLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYL 237 (289)
Q Consensus 164 ~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~L 237 (289)
++++|++. |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|
T Consensus 82 ~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 82 IVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999 9999999999999999999999999999999999995 99999999999999999999999987
No 62
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=6.8e-29 Score=197.01 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=117.2
Q ss_pred cHHHhcCCHHHHHHHHHcC-CcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376 86 QIKQVKTSEDWFREMVETG-VKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA 161 (289)
Q Consensus 86 ~~~~~~~~~~~~~~Ll~~g-~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~ 161 (289)
+.++..++.++++.|++.+ .++ +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~--- 84 (179)
T 3f6q_A 10 FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM-RGARINVM-NRGDDTPLHLAASHGH--- 84 (179)
T ss_dssp HHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHTTC---
T ss_pred HHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCc-CCCCCCHHHHHHHcCC---
Confidence 3466777778888877773 333 5567788888888888888887777 47777777 7777888888888888
Q ss_pred HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376 162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT 241 (289)
Q Consensus 162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 241 (289)
.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+|||++|+..++.+++++|+++|
T Consensus 85 ~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g 161 (179)
T 3f6q_A 85 RDIVQKLLQY--KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEKMG 161 (179)
T ss_dssp HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 8888888877 7778777778888888888888888888888888774 777888888888888777888888888888
Q ss_pred CCcc
Q 039376 242 GVEE 245 (289)
Q Consensus 242 ~~~~ 245 (289)
++++
T Consensus 162 ~~~~ 165 (179)
T 3f6q_A 162 QNLN 165 (179)
T ss_dssp CCCS
T ss_pred cCcc
Confidence 8776
No 63
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=3.7e-29 Score=211.67 Aligned_cols=197 Identities=18% Similarity=0.173 Sum_probs=154.7
Q ss_pred CchhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhc---CCHHHHHHHHHcC
Q 039376 28 QPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVK---TSEDWFREMVETG 104 (289)
Q Consensus 28 ~~~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Ll~~g 104 (289)
......+...|..++|++|++.+........ . . ... .+.......+.|+.. ++.+++++|+++|
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----~--~-~~~------~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLT----D--S-EFK------DPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTT----S--G-GGS------CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccC----C--c-ccc------cCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 3445566677888888888775421111000 0 0 000 000112223345554 8899999999998
Q ss_pred Cc--------------CCCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCC--------------CCChHHHHHHhc
Q 039376 105 VK--------------VDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTE--------------SCGTLFHSMANI 156 (289)
Q Consensus 105 ~~--------------~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~--------------~~~t~Lh~A~~~ 156 (289)
++ .|..|.||||+|++.|+.+++++|++ .+++++.+ +. .|.||||+|+..
T Consensus 81 a~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~ga~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~ 158 (273)
T 2pnn_A 81 RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE-NGADVQAA-ANGDFFKKTKGRPGFYFGELPLSLAACT 158 (273)
T ss_dssp HHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-BCSGGGSSCSSSCCCCSCBSHHHHHHHT
T ss_pred ccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcCcc-ccccccccccccccccCCCCHHHHHHHc
Confidence 64 24589999999999999999999999 58999988 65 799999999999
Q ss_pred CCchHHHHHHHHHh---ccCCCCccccCCCCCCHHHHHHHhCC---------HHHHHHHHHcCCCCCC-------CCCCC
Q 039376 157 NEDEAHRLLDEFLD---MISPLDLEETDTSGGTPLTSAAIVGN---------TKAAKILVKYNKNLPN-------MRNRI 217 (289)
Q Consensus 157 g~~~~~~~v~~Ll~---~~~g~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~i~~-------~~~~~ 217 (289)
|+ .+++++|++ . |++++.+|..|+||||+|+..|+ .+++++|+++|+++ + .+|..
T Consensus 159 g~---~~~v~~Ll~~~~~--gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~-n~~~~~~~~~d~~ 232 (273)
T 2pnn_A 159 NQ---LAIVKFLLQNSWQ--PADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL-HPTLKLEEITNRK 232 (273)
T ss_dssp TC---HHHHHHHHHCSSC--CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH-CTTCCGGGCCCTT
T ss_pred CC---HHHHHHHHhcccC--CCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhc-ccccccccccCCC
Confidence 99 999999999 7 99999999999999999999998 79999999999985 5 48999
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcCC-Ccc
Q 039376 218 GQCPIHCAARSGHRETVEYLLSVTG-VEE 245 (289)
Q Consensus 218 g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~ 245 (289)
|+||||+|+..|+.+++++|+++|+ ++.
T Consensus 233 g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~ 261 (273)
T 2pnn_A 233 GLTPLALAASSGKIGVLAYILQREIHEPE 261 (273)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHHTC---
T ss_pred CCCHHHHHHHhChHHHHHHHHHCCCCCch
Confidence 9999999999999999999999999 666
No 64
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=6.4e-28 Score=189.08 Aligned_cols=153 Identities=17% Similarity=0.128 Sum_probs=144.1
Q ss_pred ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376 85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA 161 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~ 161 (289)
.+.++..++.+++++|++.|.++ |..|.||||+|+..|+.+++++|++ .+++++.. +..|.||||+|+..|+
T Consensus 7 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~--- 81 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLL-GKGRESALSLACSKGY--- 81 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHHTC---
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCc-CCCCCcHHHHHHHcCC---
Confidence 45688899999999999999876 5689999999999999999999999 58999998 9999999999999999
Q ss_pred HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376 162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT 241 (289)
Q Consensus 162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 241 (289)
.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|++++
T Consensus 82 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 82 TDIVKMLLDC--GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp HHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999999999999995 999999999999999999999999999998
Q ss_pred CCcc
Q 039376 242 GVEE 245 (289)
Q Consensus 242 ~~~~ 245 (289)
++..
T Consensus 159 ~~~~ 162 (167)
T 3v31_A 159 LKLL 162 (167)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7754
No 65
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.96 E-value=1.6e-27 Score=196.87 Aligned_cols=177 Identities=18% Similarity=0.149 Sum_probs=160.8
Q ss_pred ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376 85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA 161 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~ 161 (289)
...|+..++.+++++|++.|+++ +..|.||||+|++.|+.+++++|++ .+.+++...+..|.||||+|+..|+
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~t~L~~A~~~~~--- 88 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS-KGAIVDQLGGDLNSTPLHWATRQGH--- 88 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCBTTTTBCHHHHHHHHTC---
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH-cCCcchhhcCCcCCChhHHHHHcCC---
Confidence 34588899999999999999887 5689999999999999999999999 4677665535669999999999999
Q ss_pred HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHhc
Q 039376 162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH-RETVEYLLSV 240 (289)
Q Consensus 162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~ 240 (289)
.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..++ .+++++|+++
T Consensus 89 ~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~ 165 (240)
T 3eu9_A 89 LSMVVQLMKY--GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165 (240)
T ss_dssp HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHT
T ss_pred HHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhc
Confidence 9999999999 9999999999999999999999999999999999995 9999999999999997665 8999999999
Q ss_pred CCCcccccccCCCCccccc-ccchHHHHHHHhCCCCccc
Q 039376 241 TGVEEEDSHEKYSNPFAGE-CGLKLLEILIEFNFLGQYT 278 (289)
Q Consensus 241 g~~~~~~~~~~~~~~~~~~-~g~~~l~~a~~~g~~~~~~ 278 (289)
|++++ ..+. .|.||||+|+..|..++..
T Consensus 166 ~~~~~----------~~~~~~g~t~L~~A~~~~~~~~v~ 194 (240)
T 3eu9_A 166 NVSVN----------LGDKYHKNTALHWAVLAGNTTVIS 194 (240)
T ss_dssp TCCTT----------CCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred CCCcc----------hhhccCCCcHHHHHHHcCCHHHHH
Confidence 99999 7776 8999999999999887543
No 66
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=7e-30 Score=210.97 Aligned_cols=173 Identities=16% Similarity=0.093 Sum_probs=144.4
Q ss_pred HHHHHcCCcC------CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhc
Q 039376 98 REMVETGVKV------DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDM 171 (289)
Q Consensus 98 ~~Ll~~g~~~------~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~ 171 (289)
+.|+++|+++ +..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..|+ .+++++|++.
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-d~~g~tpLh~A~~~g~---~~~v~~Ll~~ 76 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQP-NEEGITALHNAICGAN---YSIVDFLITA 76 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHC
Confidence 5677777765 3467799999999999999999998 48899998 9999999999999999 9999999999
Q ss_pred cCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-CCCCCHHHHH--HHcCCHHHHHHHHhcCCCcc-cc
Q 039376 172 ISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRN-RIGQCPIHCA--ARSGHRETVEYLLSVTGVEE-ED 247 (289)
Q Consensus 172 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~-~~g~t~L~~A--~~~~~~~~~~~Ll~~g~~~~-~~ 247 (289)
|++++.+|..|+||||+|+..|+.+++++|+++|+++ +..+ ..|+||||+| +..|+.+++++|+++|++++ .+
T Consensus 77 --ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~ 153 (229)
T 2vge_A 77 --GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN 153 (229)
T ss_dssp --TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSG
T ss_pred --CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccccc
Confidence 9999999999999999999999999999999999996 8776 6999999999 99999999999999999987 33
Q ss_pred cccCCCC---------------------cccccccchHHHHHHHhCCCCccc
Q 039376 248 SHEKYSN---------------------PFAGECGLKLLEILIEFNFLGQYT 278 (289)
Q Consensus 248 ~~~~~~~---------------------~~~~~~g~~~l~~a~~~g~~~~~~ 278 (289)
....+++ ...+..|.|||++|+..|+.++..
T Consensus 154 ~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~ 205 (229)
T 2vge_A 154 SGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205 (229)
T ss_dssp GGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred CCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcceee
Confidence 3222211 135667999999999999888543
No 67
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=9.6e-29 Score=207.09 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=139.8
Q ss_pred ccHHHhc---CCHHHHHHHHHcCCcCC--------------CCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCC--
Q 039376 85 QQIKQVK---TSEDWFREMVETGVKVD--------------LGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTES-- 145 (289)
Q Consensus 85 ~~~~~~~---~~~~~~~~Ll~~g~~~~--------------~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~-- 145 (289)
.+.|+.. ++.+++++|++.|++++ ..|.||||+|+..|+.+++++|++ .+++++.+ +..
T Consensus 47 L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-~~~~~ 124 (256)
T 2etb_A 47 LMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE-NGADVHLR-ACGRF 124 (256)
T ss_dssp HHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CCSGG
T ss_pred HHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-ccccc
Confidence 3456676 88999999999987653 579999999999999999999999 58999888 665
Q ss_pred -----------CChHHHHHHhcCCchHHHHHHHHHh---ccCCCCccccCCCCCCHHHHHHH--hCCHH-------HHHH
Q 039376 146 -----------CGTLFHSMANINEDEAHRLLDEFLD---MISPLDLEETDTSGGTPLTSAAI--VGNTK-------AAKI 202 (289)
Q Consensus 146 -----------~~t~Lh~A~~~g~~~~~~~v~~Ll~---~~~g~~~~~~~~~g~t~L~~A~~--~g~~~-------~v~~ 202 (289)
|.||||+|+..|+ .+++++|++ . |++++.+|..|+||||+|+. .++.+ ++++
T Consensus 125 ~~~~~~~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~~~~--ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~ 199 (256)
T 2etb_A 125 FQKHQGTCFYFGELPLSLAACTKQ---WDVVTYLLENPHQ--PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199 (256)
T ss_dssp GSCCSSSCCCSCSSHHHHHHHTTC---HHHHHHHHHCSSC--CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHcCC---HHHHHHHHhcccc--CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHH
Confidence 9999999999999 999999999 7 99999999999999999999 78888 9999
Q ss_pred HHHcCCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376 203 LVKYNKNLP-------NMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE 245 (289)
Q Consensus 203 Ll~~g~~i~-------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 245 (289)
|+++|++ + +.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus 200 Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 200 LLQMGAR-LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp HHHHHHH-HSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCC-cccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence 9999998 5 7899999999999999999999999999998765
No 68
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=8.8e-28 Score=192.66 Aligned_cols=149 Identities=18% Similarity=0.193 Sum_probs=140.3
Q ss_pred ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376 85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA 161 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~ 161 (289)
.+.++..++.+++++|+++|+++ +..|.||||+|++.|+.+++++|++. +++++.+ +..|.||||+|+..|+
T Consensus 39 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~--- 113 (192)
T 2rfm_A 39 LMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTK-DFSGKTPLMWSIIFGY--- 113 (192)
T ss_dssp HHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTC---
T ss_pred HHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCcHHHHHHHcCC---
Confidence 34577889999999999999876 56799999999999999999999995 8899998 9999999999999999
Q ss_pred HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376 162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT 241 (289)
Q Consensus 162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 241 (289)
.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|
T Consensus 114 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 114 SEMSYFLLEH--GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 9999999999 9999999999999999999999999999999999995 999999999999999999999999999876
No 69
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=1.6e-27 Score=189.05 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=141.3
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHH
Q 039376 110 GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLT 189 (289)
Q Consensus 110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~ 189 (289)
.+.++||.|++.|+.+++++|++..+.+++.+ +..|.||||+|+..|+ .+++++|++. |++++.++..|.||||
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~ 77 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGR---SAVVEMLIMR--GARINVMNRGDDTPLH 77 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCc---HHHHHHHHHc--CCCCCCcCCCCCCHHH
Confidence 56789999999999999999999778888888 9999999999999999 9999999999 9999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc-cccccCCCCcccc-cccchHHHH
Q 039376 190 SAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE-EDSHEKYSNPFAG-ECGLKLLEI 267 (289)
Q Consensus 190 ~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~~~~~~~-~~g~~~l~~ 267 (289)
+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++ .+....+++...- ......+.+
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~ 156 (179)
T 3f6q_A 78 LAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRER 156 (179)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999996 9999999999999999999999999999999999 7778888885544 344566777
Q ss_pred HHHhCC
Q 039376 268 LIEFNF 273 (289)
Q Consensus 268 a~~~g~ 273 (289)
+.+.|.
T Consensus 157 L~~~g~ 162 (179)
T 3f6q_A 157 AEKMGQ 162 (179)
T ss_dssp HHHTTC
T ss_pred HHHhhc
Confidence 787774
No 70
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.95 E-value=4e-28 Score=188.39 Aligned_cols=142 Identities=20% Similarity=0.198 Sum_probs=119.4
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCC-
Q 039376 108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGT- 186 (289)
Q Consensus 108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t- 186 (289)
+..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+ .|+ .+++++|++. |++++.++..|+|
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~-~~~---~~~v~~Ll~~--g~~~~~~d~~g~tt 80 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLE-AGANPNAP-NSYGRRPIQVMM-MGS---ARVAELLLLH--GAEPNCADPATLTR 80 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCC-CSSSCCTTTSSC-TTC---HHHHHHHHTT--TCCCCCCCTTTCCC
T ss_pred CccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHH-cCC---HHHHHHHHHc--CCCCCCcCCCCCcH
Confidence 5678999999999999999999998 58999999 999999999985 899 9999999999 9999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHH
Q 039376 187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLE 266 (289)
Q Consensus 187 ~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~ 266 (289)
|||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++ ..+..|.++.+
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~~~ 149 (156)
T 1bi7_B 81 PVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR----------GSNHARIDAAE 149 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------------------
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC----------ccCcCcCcccc
Confidence 999999999999999999999995 9999999999999999999999999999999999 88888988876
Q ss_pred HH
Q 039376 267 IL 268 (289)
Q Consensus 267 ~a 268 (289)
.+
T Consensus 150 ~~ 151 (156)
T 1bi7_B 150 GP 151 (156)
T ss_dssp --
T ss_pred cC
Confidence 43
No 71
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.95 E-value=1.8e-27 Score=203.54 Aligned_cols=176 Identities=13% Similarity=0.127 Sum_probs=158.3
Q ss_pred cHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHH
Q 039376 86 QIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAH 162 (289)
Q Consensus 86 ~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~ 162 (289)
+.|+..++.+++++|+++|+++ |..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+ .
T Consensus 45 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-~~~g~tpL~~A~~~g~---~ 119 (299)
T 1s70_B 45 LAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQP-DNEGWIPLHAAASCGY---L 119 (299)
T ss_dssp HHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHHTC---H
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-CCCCCcHHHHHHHcCC---H
Confidence 3478899999999999999987 5689999999999999999999999 68999999 9999999999999999 9
Q ss_pred HHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHc-CCC-------------------------CCCCCCC
Q 039376 163 RLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKY-NKN-------------------------LPNMRNR 216 (289)
Q Consensus 163 ~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-------------------------i~~~~~~ 216 (289)
+++++|++. |++++..+..|.||||+|+..++.+++++++.. +.+ .....+.
T Consensus 120 ~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 197 (299)
T 1s70_B 120 DIAEYLISQ--GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK 197 (299)
T ss_dssp HHHHHHHHT--TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred HHHHHHHhC--CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcC
Confidence 999999999 999999999999999999999998888876643 222 1234667
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376 217 IGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT 278 (289)
Q Consensus 217 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~ 278 (289)
.|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.++..
T Consensus 198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~----------~~d~~g~tpL~~A~~~~~~~~v~ 249 (299)
T 1s70_B 198 SGGTALHVAAAKGYTEVLKLLIQARYDVN----------IKDYDGWTPLHAAAHWGKEEACR 249 (299)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHTTTCCTT----------CCCTTCCCHHHHHHHTTCHHHHH
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHcCCCCC----------CcCCCCCcHHHHHHhcCCHHHHH
Confidence 89999999999999999999999999999 99999999999999999988543
No 72
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=9.1e-28 Score=182.05 Aligned_cols=127 Identities=19% Similarity=0.213 Sum_probs=122.3
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCC-CCC
Q 039376 108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTS-GGT 186 (289)
Q Consensus 108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~-g~t 186 (289)
+..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+. ++ .+++++|++. |++++.++.. |+|
T Consensus 9 ~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~-~~---~~~v~~Ll~~--g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQVETVRQLLE-AGADPNAL-NRFGRRPIQVMMM-GS---AQVAELLLLH--GAEPNCADPATLTR 80 (136)
T ss_dssp CCCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTCCTTTTTSTT-SC---HHHHHHHHHH--TCCSSCCBTTTTBC
T ss_pred CCCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCc-CCCCCCHHHHHHc-CC---HHHHHHHHHC--CCCCCCcCCCCCCC
Confidence 6689999999999999999999999 58999998 9999999999999 99 9999999999 9999999999 999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 039376 187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV 243 (289)
Q Consensus 187 ~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 243 (289)
|||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..++.+++++|+++|+|
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999995 99999999999999999999999999999986
No 73
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=2.6e-27 Score=185.23 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=135.9
Q ss_pred ccHHHhcCCHHHHHHHHHcCC-cC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCch
Q 039376 85 QQIKQVKTSEDWFREMVETGV-KV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDE 160 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~-~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~ 160 (289)
.+.++..++.++++.|++.+. ++ +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+
T Consensus 12 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~-- 87 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAK-DKGGLVPLHNACSYGH-- 87 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC--
T ss_pred HHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCcc-CCCCCCHHHHHHHcCc--
Confidence 345788899999999998543 33 5578899999999999999999999 58999999 9999999999999999
Q ss_pred HHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 039376 161 AHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240 (289)
Q Consensus 161 ~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 240 (289)
.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+. ++.+++++|+++
T Consensus 88 -~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~i~~~L~~~ 162 (165)
T 3twr_A 88 -YEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTDIQDLLRGD 162 (165)
T ss_dssp -HHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred -HHHHHHHHhC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChHHHHHHhhc
Confidence 9999999999 9999999999999999999999999999999999995 9999999999999776 999999999999
Q ss_pred CC
Q 039376 241 TG 242 (289)
Q Consensus 241 g~ 242 (289)
|+
T Consensus 163 gA 164 (165)
T 3twr_A 163 AA 164 (165)
T ss_dssp --
T ss_pred cc
Confidence 86
No 74
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=2.4e-28 Score=205.03 Aligned_cols=149 Identities=17% Similarity=0.181 Sum_probs=135.3
Q ss_pred hcCCHHHHHHHHHcCCcC--------------CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccC------------
Q 039376 90 VKTSEDWFREMVETGVKV--------------DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFT------------ 143 (289)
Q Consensus 90 ~~~~~~~~~~Ll~~g~~~--------------~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~------------ 143 (289)
..++.+++++|++.|++. |..|.||||+|+..|+.+++++|++ .+++++.+ +
T Consensus 58 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-~~~~~~~~~~~~~ 135 (260)
T 3jxi_A 58 SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE-KGADVHAQ-ARGRFFQPKDEGG 135 (260)
T ss_dssp BTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CEECCCSSSCCCC
T ss_pred hcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHh-CCCCcCcc-ccccccCcccccc
Confidence 458889999999987542 2389999999999999999999999 68999988 6
Q ss_pred --CCCChHHHHHHhcCCchHHHHHHHHHh---ccCCCCccccCCCCCCHHHHHHHhCC---------HHHHHHHHHcCCC
Q 039376 144 --ESCGTLFHSMANINEDEAHRLLDEFLD---MISPLDLEETDTSGGTPLTSAAIVGN---------TKAAKILVKYNKN 209 (289)
Q Consensus 144 --~~~~t~Lh~A~~~g~~~~~~~v~~Ll~---~~~g~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~ 209 (289)
..|.||||+|+..|+ .+++++|++ . |++++.+|..|+||||+|+..++ .+++++|+++|++
T Consensus 136 ~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~--ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~ 210 (260)
T 3jxi_A 136 YFYFGELPLSLAACTNQ---PHIVHYLTENGHK--QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK 210 (260)
T ss_dssp SCCSCSSHHHHHHHTTC---HHHHHHHHHCSSC--CCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHcCC---HHHHHHHHhcccc--CCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc
Confidence 579999999999999 999999999 7 99999999999999999999888 7999999999998
Q ss_pred CC------CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376 210 LP------NMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE 245 (289)
Q Consensus 210 i~------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 245 (289)
+. +.++..|+||||+|+..|+.+++++|+++|++..
T Consensus 211 ~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 211 LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence 31 5699999999999999999999999999998865
No 75
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=2.9e-26 Score=177.52 Aligned_cols=145 Identities=16% Similarity=0.178 Sum_probs=135.1
Q ss_pred cHHHhcCCHHHHHHHHHcC-CcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376 86 QIKQVKTSEDWFREMVETG-VKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA 161 (289)
Q Consensus 86 ~~~~~~~~~~~~~~Ll~~g-~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~ 161 (289)
+.++..++.++++.|++.. .++ +..|.||||+ +..|+.+++++|++ .+++++.+ +..|.||||+|+..|+
T Consensus 7 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~--- 80 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLK-QGASPNVQ-DTSGTSPVHDAARTGF--- 80 (156)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---
T ss_pred HHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCc-CCCCCCHHHHHHHcCc---
Confidence 4578889999999999982 244 6689999999 99999999999998 58999999 9999999999999999
Q ss_pred HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 039376 162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240 (289)
Q Consensus 162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 240 (289)
.+++++|++. |++++.++..|+||||+|+..|+.+++++|++. +++ +.++..|+||||+|+..|+.+++++|+++
T Consensus 81 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 81 LDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 9999999999 999999999999999999999999999999999 885 99999999999999999999999999975
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=3.4e-28 Score=202.01 Aligned_cols=179 Identities=14% Similarity=0.093 Sum_probs=133.1
Q ss_pred cHHHhcCCHHHHHHHHHcCCcCC--CCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHH
Q 039376 86 QIKQVKTSEDWFREMVETGVKVD--LGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHR 163 (289)
Q Consensus 86 ~~~~~~~~~~~~~~Ll~~g~~~~--~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~ 163 (289)
+.+...+..+.++.|+++|++++ ..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+ .+
T Consensus 10 ~~a~~~~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-d~~g~t~L~~A~~~g~---~~ 84 (239)
T 1ycs_B 10 PPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLP-NDEGITALHNAVCAGH---TE 84 (239)
T ss_dssp ---------------------------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCC-CTTSCCHHHHHHHHTC---HH
T ss_pred chhhhhhhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCc-CCCCCCHHHHHHHcCC---HH
Confidence 45667788889999999999875 467899999999999999999998 58899999 9999999999999999 99
Q ss_pred HHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCC-CHHHHH--HHcCCHHHHHHHHhc
Q 039376 164 LLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQ-CPIHCA--ARSGHRETVEYLLSV 240 (289)
Q Consensus 164 ~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~-t~L~~A--~~~~~~~~~~~Ll~~ 240 (289)
++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|+++ +..+..|. ||||+| +..|+.+++++|+++
T Consensus 85 ~v~~Ll~~--ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~ 161 (239)
T 1ycs_B 85 IVKFLVQF--GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161 (239)
T ss_dssp HHHHHHHH--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred HHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence 99999999 9999999999999999999999999999999999996 88888777 999999 788999999999999
Q ss_pred CCCcccccccCCCCcccccccchHHHHHHHhCC
Q 039376 241 TGVEEEDSHEKYSNPFAGECGLKLLEILIEFNF 273 (289)
Q Consensus 241 g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~ 273 (289)
|++++...+ .......+..+.++.++++..|.
T Consensus 162 ~a~~~~~~~-~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 162 QEKMGIMNK-GVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHTTTTGG-GEEEESSCBCCSSTTBCCBCSSC
T ss_pred hhccccccc-ceEEEEeccCCCCCCcccccCCC
Confidence 999871111 11111235556677766666554
No 77
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=2.6e-26 Score=170.85 Aligned_cols=126 Identities=26% Similarity=0.374 Sum_probs=121.0
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHH
Q 039376 110 GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLT 189 (289)
Q Consensus 110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~ 189 (289)
+|.||||+|++.|+.+++++|++. +.+++.. +..|.||||+|+..++ .+++++|++. |++++.++..|.||||
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~~~~g~t~l~ 73 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEA--GADVNAKDKNGRTPLH 73 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCc---HHHHHHHHHc--CCCCcccCCCCCcHHH
Confidence 489999999999999999999994 8888888 8999999999999999 9999999999 9999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 039376 190 SAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV 243 (289)
Q Consensus 190 ~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 243 (289)
+|+..|+.+++++|+++|+++ +.++..|+||||+|+..++.+++++|+++|++
T Consensus 74 ~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 74 LAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 999999999999999999995 99999999999999999999999999999986
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=2e-27 Score=197.41 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=109.1
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376 108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP 187 (289)
Q Consensus 108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~ 187 (289)
+..|.||||.|++.|+.+.++.|++ .|++++. +..+.||||.|+..|+ .+++++|++. |++++.++..|.||
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~--~~~~~t~L~~A~~~g~---~~~v~~Ll~~--g~~~~~~d~~g~t~ 73 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIA-HGMRVKF--NPLPLALLLDSSLEGE---FDLVQRIIYE--VDDPSLPNDEGITA 73 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTC---HHHHHHHTST--TSSCCCCCTTSCCH
T ss_pred CccccccCchhhhhhhHHHHHHHhc-cCCCccc--CchhhHHHHHHHHcCC---HHHHHHHHHc--CCCCCCcCCCCCCH
Confidence 4579999999999999999999998 5888875 4678999999999999 9999999999 89999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccc-hHHH
Q 039376 188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGL-KLLE 266 (289)
Q Consensus 188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~-~~l~ 266 (289)
||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++++ ..+..|. ||++
T Consensus 74 L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~~~~t~l~ 142 (239)
T 1ycs_B 74 LHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF----------AMTYSDMQTAAD 142 (239)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCSSSCCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc----------eecCCCCcchHH
Confidence 99999999999999999999996 9999999999999999999999999999999999 8887766 9999
Q ss_pred HH--HHhCCCCcc
Q 039376 267 IL--IEFNFLGQY 277 (289)
Q Consensus 267 ~a--~~~g~~~~~ 277 (289)
+| +..|+.++.
T Consensus 143 ~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 143 KCEEMEEGYTQCS 155 (239)
T ss_dssp HCCSSSTTCCCHH
T ss_pred HHHHhhhccHHHH
Confidence 98 677777743
No 79
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=3.1e-26 Score=173.54 Aligned_cols=126 Identities=21% Similarity=0.265 Sum_probs=119.3
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376 108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP 187 (289)
Q Consensus 108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~ 187 (289)
...|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..++ .+++++|++. |++++.++..|.||
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~d~~g~t~ 83 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMA-NGADVNAK-DEYGLTPLYLATAHGH---LEIVEVLLKN--GADVNAVDAIGFTP 83 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHT--TCCTTCCCTTCCCH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHH-cCCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCcCCCCCCCH
Confidence 4467899999999999999999999 58999998 9999999999999999 9999999999 99999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376 188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT 241 (289)
Q Consensus 188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 241 (289)
||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|
T Consensus 84 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 84 LHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999995 999999999999999999999999999886
No 80
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=3.1e-26 Score=194.27 Aligned_cols=149 Identities=16% Similarity=0.217 Sum_probs=137.9
Q ss_pred cHHHhcCCHHHHHHHHHcCC-cC---CCCCchHHHHHH-----HcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhc
Q 039376 86 QIKQVKTSEDWFREMVETGV-KV---DLGEHPQLRRAL-----VRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANI 156 (289)
Q Consensus 86 ~~~~~~~~~~~~~~Ll~~g~-~~---~~~g~t~Lh~A~-----~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~ 156 (289)
+.|+..++.+++++|++.|+ ++ +..|.||||+|+ ..++.+++++|++. +...+.. +..|.||||+|+..
T Consensus 116 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~tpLh~A~~~ 193 (276)
T 4hbd_A 116 HYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL-GNINAKA-SQAGQTALMLAVSH 193 (276)
T ss_dssp HHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH-SCTTCCC-TTTCCCHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc-CCCcccc-CCCCCCHHHHHHHc
Confidence 35888999999999999998 55 668999999999 67899999999985 6777777 88899999999999
Q ss_pred CCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 039376 157 NEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVK-YNKNLPNMRNRIGQCPIHCAARSGHRETVE 235 (289)
Q Consensus 157 g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~ 235 (289)
|+ .+++++|++. |++++.+|..|+||||+|+..|+.+++++|++ .|+++ +.+|..|+||||+|+..|+.++++
T Consensus 194 g~---~~~v~~Ll~~--gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~TpL~~A~~~g~~~iv~ 267 (276)
T 4hbd_A 194 GR---VDVVKALLAC--EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI-SLTDRDGSTALMVALDAGQSEIAS 267 (276)
T ss_dssp TC---HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT-TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred CC---HHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC-cCcCCCCCCHHHHHHHcCCHHHHH
Confidence 99 9999999999 99999999999999999999999999999999 89995 999999999999999999999999
Q ss_pred HHHhcCC
Q 039376 236 YLLSVTG 242 (289)
Q Consensus 236 ~Ll~~g~ 242 (289)
+|++++.
T Consensus 268 ~Ll~~~~ 274 (276)
T 4hbd_A 268 MLYSRMN 274 (276)
T ss_dssp HHHHHCC
T ss_pred HHHhccC
Confidence 9998753
No 81
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.93 E-value=2.5e-27 Score=205.86 Aligned_cols=206 Identities=14% Similarity=0.096 Sum_probs=155.0
Q ss_pred hhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcCCC-----------------CCc---hHHHHHHHcCCH
Q 039376 65 EITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVDL-----------------GEH---PQLRRALVRKDW 124 (289)
Q Consensus 65 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~-----------------~g~---t~Lh~A~~~g~~ 124 (289)
+++++++..+..++..+..+..+. .++.++++.|+++|++++. .+. +.+|+|+..+..
T Consensus 33 dlv~~ll~~ga~i~~~~~~g~~~~--~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 110 (327)
T 1sw6_A 33 DLTSDFLSSPLKIMKALPSPVVND--NEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQ 110 (327)
T ss_dssp TCCCSTTTSSCCCEECBCCCCCCC--HHHHHHHHHHHHHHHC-------------------------------CHHHHHH
T ss_pred chHHHHhhCCcccccCCCCCCccc--CchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHH
Confidence 445566666766666665554442 2889999999999987543 111 224677777777
Q ss_pred HHHHHHHhhCCCCccc-ccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCC---HHHH
Q 039376 125 KEVERFISENPDTLYA-KFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGN---TKAA 200 (289)
Q Consensus 125 ~~v~~ll~~~~~~~~~-~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~---~~~v 200 (289)
++++.|++ .+++++. + +..|.||||+|+..|+ .++|++|++. |++++.++..|+||||+|+..|+ .+++
T Consensus 111 ~~~~~l~~-~g~dvn~~~-d~~g~TpLh~Aa~~g~---~~~v~~Ll~~--Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~ 183 (327)
T 1sw6_A 111 EVNDAFPN-TQLNLNIPV-DEHGNTPLHWLTSIAN---LELVKHLVKH--GSNRLYGDNMGESCLVKAVKSVNNYDSGTF 183 (327)
T ss_dssp HHHHHCTT-SCCCSCSCC-STTCCCHHHHHHHTTC---HHHHHHHHHT--TCCTTBCCTTCCCHHHHHHHSSHHHHTTCH
T ss_pred HHHHHHHh-cCCCccccc-CCCCCcHHHHHHHcCC---HHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHhcccccHHHH
Confidence 88887777 6899999 7 9999999999999999 9999999999 99999999999999999999998 6788
Q ss_pred HHHHHcC-CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhc--------------------CCCcc-cccccCCC-
Q 039376 201 KILVKYN-KNLPNMRNRIGQCPIHCAAR----SGHRETVEYLLSV--------------------TGVEE-EDSHEKYS- 253 (289)
Q Consensus 201 ~~Ll~~g-~~i~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~--------------------g~~~~-~~~~~~~~- 253 (289)
+.|++++ +++ +.++..|+||||+|+. .|+.+++++|++. |++++ .+....++
T Consensus 184 ~~ll~~~~~~~-~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L 262 (327)
T 1sw6_A 184 EALLDYLYPCL-ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 262 (327)
T ss_dssp HHHHHHHGGGG-GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHH
T ss_pred HHHHHhhhccc-cCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChh
Confidence 8888876 564 8999999999999999 8999999999988 55555 33333322
Q ss_pred -------------CcccccccchHHHHHHHhCCCCccccc
Q 039376 254 -------------NPFAGECGLKLLEILIEFNFLGQYTCN 280 (289)
Q Consensus 254 -------------~~~~~~~g~~~l~~a~~~g~~~~~~~~ 280 (289)
....+..|+||||+|+..|+.++...+
T Consensus 263 ~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~L 302 (327)
T 1sw6_A 263 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 302 (327)
T ss_dssp HHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 336788999999999999998854443
No 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=1.5e-26 Score=184.79 Aligned_cols=148 Identities=11% Similarity=0.036 Sum_probs=72.9
Q ss_pred chHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCc-hHHHHHHHHHhccCCCCccccCCCCCCHHHH
Q 039376 112 HPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINED-EAHRLLDEFLDMISPLDLEETDTSGGTPLTS 190 (289)
Q Consensus 112 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~-~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~ 190 (289)
+++|+.|++.|+.+.++.++.. + ++...+..|+||||+|+..++. ...+++++|++. |++++.++..|+||||+
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~-~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpLh~ 81 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEK-G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEGTTLFFP 81 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHH-S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTCCCTHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhc-C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCCCcHHHH
Confidence 3455555555555555555442 1 1222013455555555555540 001355555555 55555555555555555
Q ss_pred HHHhCC------HHHHHHHHHcCCCCCCCCCCCCC-CHHHHHHHcC-----CHHHHHHHHh-cCCCcccccccCCCCccc
Q 039376 191 AAIVGN------TKAAKILVKYNKNLPNMRNRIGQ-CPIHCAARSG-----HRETVEYLLS-VTGVEEEDSHEKYSNPFA 257 (289)
Q Consensus 191 A~~~g~------~~~v~~Ll~~g~~i~~~~~~~g~-t~L~~A~~~~-----~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~ 257 (289)
|+..|+ .+++++|+++|+++ +.+|..|+ ||||+|+..+ +.+++++|++ +|++++ .+
T Consensus 82 a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~----------~~ 150 (186)
T 3t8k_A 82 LFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL----------IK 150 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT----------CC
T ss_pred HHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc----------cc
Confidence 555543 34455555555553 55555555 5555555522 2345555555 555555 55
Q ss_pred ccccchHHHHHHHhCCCC
Q 039376 258 GECGLKLLEILIEFNFLG 275 (289)
Q Consensus 258 ~~~g~~~l~~a~~~g~~~ 275 (289)
+..|.||||+|...|+..
T Consensus 151 d~~G~TpL~~A~~~~~~~ 168 (186)
T 3t8k_A 151 DKWGLTALEFVKRCQKPI 168 (186)
T ss_dssp CTTSCCHHHHHHTTTCHH
T ss_pred CCCCCCHHHHHHHcCCHH
Confidence 555555555555555443
No 83
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=7e-26 Score=171.68 Aligned_cols=128 Identities=19% Similarity=0.217 Sum_probs=117.1
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376 108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP 187 (289)
Q Consensus 108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~ 187 (289)
|..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+ .+++++|++. |++++.++..|.||
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~~~~g~t~ 79 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVK-DHAGWTPLHEACNHGH---LKVVELLLQH--KALVNTTGYQNDSP 79 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCGGGCCH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCcccCcCCCCCCH
Confidence 7789999999999999999999998 58999998 9999999999999999 9999999999 99999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 039376 188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV 243 (289)
Q Consensus 188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 243 (289)
||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..+..+++++|.+.+..
T Consensus 80 L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 80 LHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence 99999999999999999999995 99999999999999999999998888766554
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=4.1e-26 Score=182.28 Aligned_cols=156 Identities=13% Similarity=0.096 Sum_probs=136.8
Q ss_pred ccHHHhcCCHHHHHHHHHcCCcC-C-CCCchHHHHHHHcCCH----HHHHHHHhhCCCCcccccCCCCChHHHHHHhcCC
Q 039376 85 QQIKQVKTSEDWFREMVETGVKV-D-LGEHPQLRRALVRKDW----KEVERFISENPDTLYAKFTESCGTLFHSMANINE 158 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~~~-~-~~g~t~Lh~A~~~g~~----~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~ 158 (289)
.+.++..|..+.++.++..+.+. + ..|.||||+|+..|+. +++++||+ .|++++.+ +..|+||||+|+..++
T Consensus 10 l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~-d~~g~TpLh~a~~~~~ 87 (186)
T 3t8k_A 10 VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSR-TKEGTTLFFPLFQGGG 87 (186)
T ss_dssp HHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCC-CTTCCCTHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCC-CCCCCcHHHHHHHcCC
Confidence 34577889999999999988654 3 5799999999999985 48999998 69999999 9999999999999986
Q ss_pred ch---HHHHHHHHHhccCCCCccccCCCCC-CHHHHHHHhC-----CHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHc
Q 039376 159 DE---AHRLLDEFLDMISPLDLEETDTSGG-TPLTSAAIVG-----NTKAAKILVK-YNKNLPNMRNRIGQCPIHCAARS 228 (289)
Q Consensus 159 ~~---~~~~v~~Ll~~~~g~~~~~~~~~g~-t~L~~A~~~g-----~~~~v~~Ll~-~g~~i~~~~~~~g~t~L~~A~~~ 228 (289)
.. ..+++++|++. |++++.+|..|+ ||||+|+..+ ..+++++|++ +|+++ +.+|..|+||||+|+..
T Consensus 88 ~~~~~~~~iv~~Ll~~--Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL~~A~~~ 164 (186)
T 3t8k_A 88 NDITGTTELCKIFLEK--GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEFVKRC 164 (186)
T ss_dssp TCHHHHHHHHHHHHHT--TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHHHHHHTT
T ss_pred cchhhHHHHHHHHHHC--CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHHHHHHHc
Confidence 21 25789999999 999999999999 9999999844 4579999999 99996 99999999999999999
Q ss_pred CCHHHHHHHHhcCCCcc
Q 039376 229 GHRETVEYLLSVTGVEE 245 (289)
Q Consensus 229 ~~~~~~~~Ll~~g~~~~ 245 (289)
|+.+++++|.++..+.+
T Consensus 165 ~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 165 QKPIALKMMEDYIKKYN 181 (186)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999998876554
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=1.9e-25 Score=169.18 Aligned_cols=127 Identities=16% Similarity=0.160 Sum_probs=119.8
Q ss_pred CCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCC
Q 039376 135 PDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMR 214 (289)
Q Consensus 135 ~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~ 214 (289)
+++++.+ +..|.||||+|+..|+ .+++++|++. |++++.++..|+||||+|+. |+.+++++|+++|+++ +.+
T Consensus 2 ~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~ 73 (136)
T 1d9s_A 2 SPGIHML-GGSSDAGLATAAARGQ---VETVRQLLEA--GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCA 73 (136)
T ss_dssp CCCCSCC-CCCCSCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCC
T ss_pred CCCccCC-CCCCccHHHHHHHcCC---HHHHHHHHHc--CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCc
Confidence 5677788 8999999999999999 9999999999 99999999999999999999 9999999999999995 999
Q ss_pred CCC-CCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCcccc
Q 039376 215 NRI-GQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTC 279 (289)
Q Consensus 215 ~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~ 279 (289)
+.. |+||||+|+..|+.+++++|+++|++++ ..+..|.|||++|+..|+.++...
T Consensus 74 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~d~~g~tpl~~A~~~~~~~~~~~ 129 (136)
T 1d9s_A 74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLD----------VCDAWGRLPVDLAEEQGHRDIARY 129 (136)
T ss_dssp BTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC----------CCSSSSSCHHHHHHHHTCHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------ccCCCCCCHHHHHHHcCCHHHHHH
Confidence 999 9999999999999999999999999999 999999999999999998875443
No 86
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.91 E-value=6e-25 Score=180.17 Aligned_cols=131 Identities=13% Similarity=0.142 Sum_probs=115.8
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376 108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP 187 (289)
Q Consensus 108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~ 187 (289)
+..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+ .+++++|++.. |++++.++..|+||
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~-g~~~~~~d~~g~tp 143 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGL-DKAGSTALYWACHGGH---KDIVEMLFTQP-NIELNQQNKLGDTA 143 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHTTST-TCCCCCCCTTSCCH
T ss_pred ccccccccccccccCcHHHHHHHHh-CCCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHcCC-CCCccccCCCCCCH
Confidence 5578999999999999999999999 68999998 9999999999999999 99999999875 79999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376 188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE 245 (289)
Q Consensus 188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 245 (289)
||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..++.++++.|+.+|++..
T Consensus 144 L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~ 200 (222)
T 3ehr_A 144 LHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT 200 (222)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence 99999999999999999999995 9999999999999999999999999999999987
No 87
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=6.3e-25 Score=166.39 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=114.9
Q ss_pred CCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC
Q 039376 136 DTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRN 215 (289)
Q Consensus 136 ~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~ 215 (289)
+++ .+ +..|.||||+|+..|+ .+++++|++. |++++.++..|+||||+|+..|+.+++++|+++|+++ +.++
T Consensus 2 ~d~-~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~ 73 (137)
T 3c5r_A 2 IDP-FT-NHRGETLLHIASIKGD---IPSVEYLLQN--GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTG 73 (137)
T ss_dssp --C-CC-CTTCCCHHHHHHHHTC---HHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred CCC-Cc-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcC
Confidence 444 45 8899999999999999 9999999999 9999999999999999999999999999999999996 9999
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCcc
Q 039376 216 RIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQY 277 (289)
Q Consensus 216 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~ 277 (289)
..|+||||+|+..|+.+++++|+++|++++ ..+..|.||+++|+..+..+++
T Consensus 74 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~tpl~~A~~~~~~~~l 125 (137)
T 3c5r_A 74 YQNDSPLHDAAKNGHVDIVKLLLSYGASRN----------AVNIFGLRPVDYTDDESMKSLL 125 (137)
T ss_dssp GGGCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCGGGGCCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------CCCCCCCCHHHHHhhccHHHHH
Confidence 999999999999999999999999999999 9999999999999887766643
No 88
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.91 E-value=3.5e-24 Score=159.26 Aligned_cols=117 Identities=18% Similarity=0.227 Sum_probs=106.5
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376 108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP 187 (289)
Q Consensus 108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~ 187 (289)
+..|.||||+|++.|+.+++++|++ .+.+++.+ +..|.||||+|+..++ .+++++|++. |++++.+|..|+||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~d~~g~tp 76 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRT-LEGGRKPLHYAADCGQ---LEILEFLLLK--GADINAPDKHHITP 76 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSC-CTTSSCHHHHHHHTTC---HHHHHHHHTT--TCCTTCCCTTSCCH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHH-cCCCcCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHc--CCCCCcCCCCCCCH
Confidence 4578899999999999999999998 58899998 9999999999999999 9999999999 99999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 039376 188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRE 232 (289)
Q Consensus 188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~ 232 (289)
||+|+..|+.+++++|+++|+++ +.++..|+||||+|...+..+
T Consensus 77 L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 77 LLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQAIKA 120 (123)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCCHHHHH
Confidence 99999999999999999999995 999999999999995444433
No 89
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=2.5e-24 Score=184.72 Aligned_cols=141 Identities=18% Similarity=0.184 Sum_probs=123.6
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCCccc------ccCCCCChHHHHHHhc---CCchHHHHHHHHHhccCCCCcccc
Q 039376 110 GEHPQLRRALVRKDWKEVERFISENPDTLYA------KFTESCGTLFHSMANI---NEDEAHRLLDEFLDMISPLDLEET 180 (289)
Q Consensus 110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~------~~~~~~~t~Lh~A~~~---g~~~~~~~v~~Ll~~~~g~~~~~~ 180 (289)
.+.++|+.|++.|+.+.++.|+. .+.+++. . +..|.||||+|+.. ++ .+++++|++. |++++.+
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~-~g~d~~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~---~~iv~~Ll~~--gadvn~~ 222 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLPGPDA-QAPEELVLHLAVKVANQAS---LPLVDFIIQN--GGHLDAK 222 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCEECSSS-CSCEECHHHHHHHTCCTTT---HHHHHHHHHH--SSCTTCC
T ss_pred chHHHHhhhhhccCHHHHHHHHh-cCCcccccCCCccc-CCCCccHHHHHHHhcccCc---HHHHHHHHhc--CCCCCCC
Confidence 34578999999999999999997 6888877 5 78999999999997 78 9999999999 9999999
Q ss_pred CCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccc
Q 039376 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGEC 260 (289)
Q Consensus 181 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~ 260 (289)
|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..++.+++++|+++|++ .
T Consensus 223 d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------------~ 285 (301)
T 2b0o_E 223 AADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG----------------T 285 (301)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------------T
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------------C
Confidence 999999999999999999999999999995 99999999999999999999999999999876 4
Q ss_pred cchHHHHHHHhCCC
Q 039376 261 GLKLLEILIEFNFL 274 (289)
Q Consensus 261 g~~~l~~a~~~g~~ 274 (289)
|.||||+|+..|+-
T Consensus 286 g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 286 FAFPLHVDYSWVIS 299 (301)
T ss_dssp TSSCCC--------
T ss_pred CCChhHHHHhcCCc
Confidence 67999999988863
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=6.6e-24 Score=160.66 Aligned_cols=120 Identities=23% Similarity=0.248 Sum_probs=113.8
Q ss_pred CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHH
Q 039376 143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI 222 (289)
Q Consensus 143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L 222 (289)
...+.||||+|+..|+ .+++++|++. |++++.++..|+||||+|+..|+.+++++|+++|+++ +..+..|+|||
T Consensus 11 ~~~~~t~l~~A~~~g~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L 84 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQ---DDEVRILMAN--GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPL 84 (136)
T ss_dssp -CHHHHHHHHHHHHTC---HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHH
T ss_pred cccccHHHHHHHHhCC---HHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHH
Confidence 5668999999999999 9999999999 9999999999999999999999999999999999996 99999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376 223 HCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT 278 (289)
Q Consensus 223 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~ 278 (289)
|+|+..|+.+++++|+++|++++ ..+..|.|||++|+..|..++..
T Consensus 85 ~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~g~tpl~~A~~~~~~~~~~ 130 (136)
T 2jab_A 85 HLAAFIGHLEIAEVLLKHGADVN----------AQDKFGKTAFDISIGNGNEDLAE 130 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCc----------CcCCCCCCHHHHHHHCCCHHHHH
Confidence 99999999999999999999999 99999999999999999887543
No 91
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=2.9e-23 Score=154.25 Aligned_cols=114 Identities=21% Similarity=0.256 Sum_probs=106.4
Q ss_pred CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHH
Q 039376 143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI 222 (289)
Q Consensus 143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L 222 (289)
+..|.||||+|+..|+ .+++++|++. |++++.++..|+||||+|+..|+.+++++|+++|+++ +.+|..|+|||
T Consensus 4 ~~~~~~~l~~A~~~~~---~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL 77 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGD---LDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPL 77 (123)
T ss_dssp ---CHHHHHHHHHTTC---HHHHHHHHHT--TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHH
T ss_pred ccccchHHHHHHHcCC---HHHHHHHHHc--CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHH
Confidence 5678999999999999 9999999999 9999999999999999999999999999999999995 99999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhC
Q 039376 223 HCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFN 272 (289)
Q Consensus 223 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g 272 (289)
|+|+..++.+++++|+++|++++ ..+..|.||+++|...+
T Consensus 78 ~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~l~~A~~~~ 117 (123)
T 3aaa_C 78 LSAVYEGHVSCVKLLLSKGADKT----------VKGPDGLTAFEATDNQA 117 (123)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCC----------CcCCCCCCHHHHhCCHH
Confidence 99999999999999999999999 99999999999985433
No 92
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=4.1e-23 Score=153.40 Aligned_cols=119 Identities=26% Similarity=0.356 Sum_probs=113.1
Q ss_pred CCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Q 039376 145 SCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHC 224 (289)
Q Consensus 145 ~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~ 224 (289)
.|.||||+|+..|+ .+++++|++. |++++..+..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+
T Consensus 1 ~g~t~L~~A~~~~~---~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~ 74 (126)
T 1n0r_A 1 NGRTPLHLAARNGH---LEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHL 74 (126)
T ss_dssp CCCCHHHHHHHHTC---HHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CCccHHHHHHHcCc---HHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHH
Confidence 48999999999999 9999999999 9999999999999999999999999999999999995 9999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCcccc
Q 039376 225 AARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTC 279 (289)
Q Consensus 225 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~ 279 (289)
|+..++.+++++|+++|++++ ..+..|.||+++|+..|..++...
T Consensus 75 A~~~~~~~~~~~Ll~~g~~~~----------~~~~~g~t~l~~A~~~~~~~~~~~ 119 (126)
T 1n0r_A 75 AARNGHLEVVKLLLEAGADVN----------AKDKNGRTPLHLAARNGHLEVVKL 119 (126)
T ss_dssp HHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHcChHHHHHHHHHcCCCCc----------ccCCCCCCHHHHHHHcCcHHHHHH
Confidence 999999999999999999999 999999999999999998875443
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=4.8e-23 Score=163.92 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=107.8
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC-CCCCC
Q 039376 108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD-TSGGT 186 (289)
Q Consensus 108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~-~~g~t 186 (289)
+..|.||||+|++.|+.+++++|++ +.+++.+ +..|.||||+|+..|+ .+++++|++. |++++.++ ..|+|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~--ga~~~~~~~~~g~t 112 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEA--GADLDHRDMRGGLT 112 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHT--TCCTTCCCSSSSCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCcCCCCCCCC
Confidence 4477899999999999999999997 7888888 9999999999999999 9999999999 99999888 88999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 039376 187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238 (289)
Q Consensus 187 ~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 238 (289)
|||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..++....+.++
T Consensus 113 pL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~~l 163 (183)
T 3deo_A 113 ALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPM 163 (183)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccCcccccHH
Confidence 999999999999999999999995 999999999999998764443333333
No 94
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.89 E-value=4.1e-26 Score=201.21 Aligned_cols=147 Identities=9% Similarity=0.020 Sum_probs=125.8
Q ss_pred ccccHHHhcCCHHHHHHHHHcCC------cCCCCCchHHHHHHHcCCHHHHHHHHhhCCCC---cccccCCCCChHHHHH
Q 039376 83 ERQQIKQVKTSEDWFREMVETGV------KVDLGEHPQLRRALVRKDWKEVERFISENPDT---LYAKFTESCGTLFHSM 153 (289)
Q Consensus 83 ~~~~~~~~~~~~~~~~~Ll~~g~------~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~---~~~~~~~~~~t~Lh~A 153 (289)
...+.|+..|+.+++++|+++|+ .++..|.||||+|++.|+.++|++|++ .+++ .+.. ... .||||+|
T Consensus 94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~-~gad~~~~~i~-~~~-~TpLh~A 170 (376)
T 2aja_A 94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQ-AEN-YHAFRLA 170 (376)
T ss_dssp HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHHS-HHH-HHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHh-CCCCccccccC-CCC-CCHHHHH
Confidence 34567889999999999999998 456688999999999999999999998 4654 2222 222 9999999
Q ss_pred HhcCCchHHHHHHHHHhccCCCCccc--cCCCCCCHHHHHH-HhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC
Q 039376 154 ANINEDEAHRLLDEFLDMISPLDLEE--TDTSGGTPLTSAA-IVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230 (289)
Q Consensus 154 ~~~g~~~~~~~v~~Ll~~~~g~~~~~--~~~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~ 230 (289)
+..|+ .++|++|++. |++++. .+..|.||||+|+ ..|+.+++++|++.|+ .|.||||+|+..|+
T Consensus 171 a~~G~---~eiv~~Ll~~--ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~ 237 (376)
T 2aja_A 171 AENGH---LHVLNRLCEL--APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGE 237 (376)
T ss_dssp HHTTC---HHHHHHHHHS--CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTT
T ss_pred HHCCC---HHHHHHHHHc--CCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCC
Confidence 99999 9999999999 899887 8888999999999 9999999999998663 27899999999999
Q ss_pred HHHHHHHHhcCCCcc
Q 039376 231 RETVEYLLSVTGVEE 245 (289)
Q Consensus 231 ~~~~~~Ll~~g~~~~ 245 (289)
.+++++|+++|++++
T Consensus 238 ~evv~lL~~~ga~~~ 252 (376)
T 2aja_A 238 KYVNPFIARHVNRLK 252 (376)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccc
Confidence 999999999999876
No 95
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.2e-24 Score=179.48 Aligned_cols=165 Identities=13% Similarity=0.075 Sum_probs=141.7
Q ss_pred cHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHH
Q 039376 86 QIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAH 162 (289)
Q Consensus 86 ~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~ 162 (289)
+.++..++.+++++|++.|+++ |..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+ .
T Consensus 26 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~n~~-d~~g~tpLh~A~~~g~---~ 100 (229)
T 2vge_A 26 LDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT-AGANVNSP-DSHGWTPLHCAASCND---T 100 (229)
T ss_dssp HHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHTTC---H
T ss_pred HHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcCC---H
Confidence 3488899999999999999987 5689999999999999999999998 58999999 9999999999999999 9
Q ss_pred HHHHHHHhccCCCCccccC-CCCCCHHHHH--HHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 039376 163 RLLDEFLDMISPLDLEETD-TSGGTPLTSA--AIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239 (289)
Q Consensus 163 ~~v~~Ll~~~~g~~~~~~~-~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 239 (289)
+++++|++. |++++.++ ..|+||||+| +..|+.+++++|++.|+++ +..+..|.||++.++.... .++|++
T Consensus 101 ~~v~~Ll~~--ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~~l~~~~~~~~---~~~ll~ 174 (229)
T 2vge_A 101 VICMALVQH--GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSAEFG---DELSFR 174 (229)
T ss_dssp HHHHHHHTT--TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEEEESSCBCCSST---TBCCBC
T ss_pred HHHHHHHHc--CCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCchHHHHHHhhccc---cccCcc
Confidence 999999999 99999986 6999999999 9999999999999999995 8888888888885544432 367788
Q ss_pred cCCCcc---cccccCCCCccccccc
Q 039376 240 VTGVEE---EDSHEKYSNPFAGECG 261 (289)
Q Consensus 240 ~g~~~~---~~~~~~~~~~~~~~~g 261 (289)
.|++++ .+..+.+++...-..|
T Consensus 175 ~ga~~~~~~~d~~G~TpL~~A~~~g 199 (229)
T 2vge_A 175 EGESVTVLRRDGPEETDWWWAALHG 199 (229)
T ss_dssp TTCEEEEEESSCTTCSSEEEEEETT
T ss_pred ccccccccccCCCcccHHHHHHHcC
Confidence 888844 5666777775443333
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=3.6e-23 Score=172.25 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=112.5
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC-CCCCC
Q 039376 108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD-TSGGT 186 (289)
Q Consensus 108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~-~~g~t 186 (289)
+..|.||||+|++.|+.+++++|++ +++++.+ +..|.||||+|+..|+ .+++++|++. |++++.++ ..|+|
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~--ga~~~~~~~~~g~t 113 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEA--GADLDHRDMRGGLT 113 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTC---HHHHHHHHHT--TCCTTCCCSSSCCC
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCC---HHHHHHHHHc--CCCCCcCCCCCCCC
Confidence 4567899999999999999998887 6788888 8889999999999999 9999999998 89998888 78999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH----------------HcCCHHHHHHHHhcCCC
Q 039376 187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAA----------------RSGHRETVEYLLSVTGV 243 (289)
Q Consensus 187 ~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~----------------~~~~~~~~~~Ll~~g~~ 243 (289)
|||+|+..|+.+++++|+++|+++ +.++..|+||||+|+ ..|+.+++++|++++.+
T Consensus 114 ~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 114 ALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 999999999999999999999995 889999999888887 67889999999987655
No 97
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=4e-23 Score=160.05 Aligned_cols=132 Identities=13% Similarity=0.048 Sum_probs=108.5
Q ss_pred cccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCCh-HHHHHHhcCCc
Q 039376 84 RQQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGT-LFHSMANINED 159 (289)
Q Consensus 84 ~~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t-~Lh~A~~~g~~ 159 (289)
..+.++..++.+++++|+++|+++ +..|.||||+|+ .|+.+++++|++ .+++++.+ +..|.| |||+|+..|+
T Consensus 15 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~-~g~~~~~~-d~~g~ttpL~~A~~~~~- 90 (156)
T 1bi7_B 15 WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLL-HGAEPNCA-DPATLTRPVHDAAREGF- 90 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHT-TTCCCCCC-CTTTCCCHHHHHHHHTC-
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHH-cCCCCCCc-CCCCCcHHHHHHHHCCC-
Confidence 345688899999999999999987 568999999985 999999999998 58999999 999999 9999999999
Q ss_pred hHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Q 039376 160 EAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHC 224 (289)
Q Consensus 160 ~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~ 224 (289)
.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|.||.+-
T Consensus 91 --~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 91 --LDTLVVLHRA--GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAEG 150 (156)
T ss_dssp --HHHHHHHHHH--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred --HHHHHHHHHc--CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCccccc
Confidence 9999999999 9999999999999999999999999999999999995 9999999999763
No 98
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.88 E-value=3.1e-22 Score=141.22 Aligned_cols=93 Identities=30% Similarity=0.461 Sum_probs=81.0
Q ss_pred CCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Q 039376 145 SCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHC 224 (289)
Q Consensus 145 ~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~ 224 (289)
.|+||||+|+..|+ .+++++|++. |++++.++..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+
T Consensus 1 ~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~ 74 (93)
T 1n0q_A 1 NGRTPLHLAARNGH---LEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHL 74 (93)
T ss_dssp --CCHHHHHHHHTC---HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CCCcHHHHHHHcCC---HHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence 37889999999998 8999999988 8888888888999999999999999999999999885 8888889999999
Q ss_pred HHHcCCHHHHHHHHhcCCC
Q 039376 225 AARSGHRETVEYLLSVTGV 243 (289)
Q Consensus 225 A~~~~~~~~~~~Ll~~g~~ 243 (289)
|+..|+.+++++|+++|++
T Consensus 75 A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 75 AARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHHTTCHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 9999999999999988875
No 99
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.88 E-value=3.8e-22 Score=175.32 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=119.2
Q ss_pred CCchHHHHHHHc-CCHHHHHHHHhhCCCCcccccC--CCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCC
Q 039376 110 GEHPQLRRALVR-KDWKEVERFISENPDTLYAKFT--ESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGT 186 (289)
Q Consensus 110 ~g~t~Lh~A~~~-g~~~~v~~ll~~~~~~~~~~~~--~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t 186 (289)
.+.|+||+|+.. |+.+++++|+. .+++++.. + ..|.||||+|+..|+ .+++++|++. |++++.+|..|+|
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~-~~~~~g~TpLh~Aa~~g~---~~iv~~LL~~--Gadvn~~d~~G~T 270 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALA-HGADVNWV-NGGQDNATPLIQATAANS---LLACEFLLQN--GANVNQADSAGRG 270 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCC-CTTTTCCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred CCCcHHHHHHHccCCHHHHHHHHH-cCCCCCcc-ccccCCCCHHHHHHHCCC---HHHHHHHHHc--CCCCCCCCCCCCC
Confidence 456899999999 99999999998 68999988 6 789999999999999 9999999999 9999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHH
Q 039376 187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLE 266 (289)
Q Consensus 187 ~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~ 266 (289)
|||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..++.+++++|+.++.... .....+..+.++++
T Consensus 271 pLh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~-------~~~~~~~~~~t~l~ 342 (368)
T 3jue_A 271 PLHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREA-------EAAQGQAGDETYLD 342 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc-------cccccCCCCCCHHH
Confidence 999999999999999999999996 9999999999999999999999999998885533 00134456777777
Q ss_pred HHHHhC
Q 039376 267 ILIEFN 272 (289)
Q Consensus 267 ~a~~~g 272 (289)
++....
T Consensus 343 i~~~~~ 348 (368)
T 3jue_A 343 IFRDFS 348 (368)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 765443
No 100
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=4.1e-22 Score=182.42 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=116.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHhhCCCCcccc-----cCCCCChHHHHHHh---cCCchHHHHHHHHHhccCCCCccccCC
Q 039376 111 EHPQLRRALVRKDWKEVERFISENPDTLYAK-----FTESCGTLFHSMAN---INEDEAHRLLDEFLDMISPLDLEETDT 182 (289)
Q Consensus 111 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~-----~~~~~~t~Lh~A~~---~g~~~~~~~v~~Ll~~~~g~~~~~~~~ 182 (289)
..+.||.|++.|+.++++.||. .+++++.+ .+..|.||||+||. .|+ .+++++|++. |++++.+|.
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~-~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~---~~~v~~Ll~~--ga~vn~~d~ 205 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS---LPLVDFIIQN--GGHLDAKAA 205 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHH-TTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTT---HHHHHHHHHH--SCCTTCCCS
T ss_pred cHHHHHHHHhccCHHHHHHHHh-hcccccCCCCCcccccccchHHHHHHHhccccc---HHHHHHHHHc--CCCCCccCC
Confidence 3478999999999999999999 57887754 25689999999976 889 9999999999 999999999
Q ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376 183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE 245 (289)
Q Consensus 183 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 245 (289)
.|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 206 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 206 DGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAGTF 267 (497)
T ss_dssp SSCCHHHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999995 9999999999999999999999999999999988
No 101
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.88 E-value=8.2e-22 Score=167.19 Aligned_cols=126 Identities=18% Similarity=0.218 Sum_probs=117.2
Q ss_pred chHHHHHHHcCCHHHHHHHHhhCCCCcc------cccCCCCChHHHHHHhc---CCchHHHHHHHHHhccCCCCccccCC
Q 039376 112 HPQLRRALVRKDWKEVERFISENPDTLY------AKFTESCGTLFHSMANI---NEDEAHRLLDEFLDMISPLDLEETDT 182 (289)
Q Consensus 112 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~------~~~~~~~~t~Lh~A~~~---g~~~~~~~v~~Ll~~~~g~~~~~~~~ 182 (289)
.++|+.|++.|+.+.++.++. .+.+++ .. +..|.||||+|+.. |+ .+++++|++. |++++.+|.
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~-~g~~~~~~~~l~~~-~~~g~t~Lh~A~~~~~~~~---~~~v~~Ll~~--ga~in~~d~ 203 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYA-DGVDLTEKIPLANG-HEPDETALHLAVRSVDRTS---LHIVDFLVQN--SGNLDKQTG 203 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-TTCCTTSBCCCSSC-SSTTCBHHHHHHHHCCTTT---HHHHHHHHHH--CSCTTCCCT
T ss_pred hhhhhhHhhhcccHHHHHHHH-hhcchhhhcccccc-ccCCCCcchHHHHhcccch---HHHHHHHHHC--CCCccccCC
Confidence 479999999999999999998 477743 33 77899999999999 88 9999999999 999999999
Q ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376 183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE 245 (289)
Q Consensus 183 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 245 (289)
.|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus 204 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 204 KGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSGRF 265 (278)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999995 9999999999999999999999999999999754
No 102
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.87 E-value=3.2e-24 Score=189.14 Aligned_cols=157 Identities=10% Similarity=0.018 Sum_probs=128.3
Q ss_pred cCCHHHHHHHHHcCCcCCCCCchHHHHHHHcCCHHHHHHHHhhCCCCc---ccccCCCCChHHHHHHhcCCchHHHHHHH
Q 039376 91 KTSEDWFREMVETGVKVDLGEHPQLRRALVRKDWKEVERFISENPDTL---YAKFTESCGTLFHSMANINEDEAHRLLDE 167 (289)
Q Consensus 91 ~~~~~~~~~Ll~~g~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~---~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~ 167 (289)
.+..+..++++++|. .+.||||+|++.|+.+++++|++. ++.. ... +..+.||||+|+..|+ .++|++
T Consensus 76 ~~~~~~~~~l~~~g~----~~~T~Lh~Aa~~G~~e~v~~Ll~~-ga~~~~~~~~-~~~~~tpL~~Aa~~G~---~eiv~~ 146 (376)
T 2aja_A 76 RNAKQLWSDAHKKGI----KSEVICFVAAITGCSSALDTLCLL-LTSDEIVKVI-QAENYQAFRLAAENGH---LHVLNR 146 (376)
T ss_dssp TTCTTHHHHHHHHTC----CHHHHHHHHHHHCCHHHHHHHTTC---CCSSCC---CHHHHHHHHHHHHTTC---HHHHHH
T ss_pred CCCHHHHHHHHHcCC----CcCCHHHHHHHcCCHHHHHHHHHc-CCcHHHHHHh-ccCCCCHHHHHHHcCC---HHHHHH
Confidence 356678888888865 456999999999999999999984 5421 122 4567899999999999 999999
Q ss_pred HHhccCCCCc---cccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCC--CCCCCCCHHHHHH-HcCCHHHHHHHHhcC
Q 039376 168 FLDMISPLDL---EETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM--RNRIGQCPIHCAA-RSGHRETVEYLLSVT 241 (289)
Q Consensus 168 Ll~~~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~--~~~~g~t~L~~A~-~~~~~~~~~~Ll~~g 241 (289)
|++. |+++ +..+.. .||||+|+..|+.+++++|+++|+++ +. .+..|+||||+|+ ..|+.+++++|+++|
T Consensus 147 Ll~~--gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g 222 (376)
T 2aja_A 147 LCEL--APTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP 222 (376)
T ss_dssp HHHS--CTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred HHhC--CCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC
Confidence 9999 8652 222233 89999999999999999999999985 66 7888999999999 999999999999976
Q ss_pred CCcccccccCCCCcccccccchHHHHHHHhCCCCcc
Q 039376 242 GVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQY 277 (289)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~ 277 (289)
++ |.||+++|+.+|+.++.
T Consensus 223 a~-----------------~~taL~~Aa~~g~~evv 241 (376)
T 2aja_A 223 VM-----------------LAYAEIHEFEYGEKYVN 241 (376)
T ss_dssp HH-----------------HHHHHHCTTTTTTTTHH
T ss_pred Cc-----------------cchHHHHHHHCCCHHHH
Confidence 32 67888888888887743
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=1.3e-22 Score=166.15 Aligned_cols=120 Identities=23% Similarity=0.278 Sum_probs=113.6
Q ss_pred CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCCCCH
Q 039376 143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKY-NKNLPNMRNRIGQCP 221 (289)
Q Consensus 143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~~~~~g~t~ 221 (289)
+..|.||||+|+..|+ .+++++|++. |++++.++..|+||||+|+..|+.+++++|++. |+++ +.++..|+||
T Consensus 70 ~~~g~t~L~~A~~~g~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tp 143 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGN---LSWLRECLDN--RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTA 143 (222)
T ss_dssp EEEESCHHHHHHHHTC---HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCH
T ss_pred ccccccccccccccCc---HHHHHHHHhC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCH
Confidence 5678999999999999 9999999998 999999999999999999999999999999999 9995 9999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376 222 IHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT 278 (289)
Q Consensus 222 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~ 278 (289)
||+|+..|+.+++++|+++|++++ ..+..|.|||++|+..|..+++.
T Consensus 144 L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~l~~A~~~~~~~~l~ 190 (222)
T 3ehr_A 144 LHAAAWKGYADIVQLLLAKGARTD----------LRNIEKKLAFDMATNAACASLLK 190 (222)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCSC----------CCCTTSCCHHHHCCSHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCc----------cccCCCCCHHHHhcchhHHHHHH
Confidence 999999999999999999999999 99999999999999888777443
No 104
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=1e-21 Score=156.17 Aligned_cols=116 Identities=27% Similarity=0.329 Sum_probs=108.9
Q ss_pred CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-CCCCCH
Q 039376 143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRN-RIGQCP 221 (289)
Q Consensus 143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~-~~g~t~ 221 (289)
+..|.||||+|+..|+ .+++++|++ +++++.++..|+||||+|+..|+.+++++|+++|+++ +.++ ..|+||
T Consensus 41 ~~~g~t~L~~A~~~g~---~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tp 113 (183)
T 3deo_A 41 VSEYETPWWTAARKAD---EQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTA 113 (183)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCH
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCH
Confidence 4578999999999999 999999998 5889999999999999999999999999999999996 8888 899999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCC
Q 039376 222 IHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLG 275 (289)
Q Consensus 222 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~ 275 (289)
||+|+..|+.+++++|+++|++++ ..+..|.|||++|+..+...
T Consensus 114 L~~A~~~~~~~~v~~Ll~~ga~~~----------~~d~~g~tpl~~A~~~~~~~ 157 (183)
T 3deo_A 114 LHMAAGYVRPEVVEALVELGADIE----------VEDERGLTALELAREILKTT 157 (183)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTT----------CCCTTSCCHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHcCCCCc----------CCCCCCCCHHHHHHHhccCc
Confidence 999999999999999999999999 99999999999999887655
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.86 E-value=3.3e-21 Score=135.90 Aligned_cols=93 Identities=22% Similarity=0.250 Sum_probs=87.9
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHH
Q 039376 110 GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLT 189 (289)
Q Consensus 110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~ 189 (289)
+|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..|+ .+++++|++. |++++.+|..|+||||
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~--ga~~~~~d~~g~t~l~ 73 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEA--GADVNAKDKNGRTPLH 73 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH-cCCCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCccCCCCCCHHH
Confidence 47899999999999999999998 68999999 9999999999999999 9999999999 9999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCCC
Q 039376 190 SAAIVGNTKAAKILVKYNKN 209 (289)
Q Consensus 190 ~A~~~g~~~~v~~Ll~~g~~ 209 (289)
+|+..|+.+++++|+++|++
T Consensus 74 ~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 74 LAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999874
No 106
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=8.9e-22 Score=168.84 Aligned_cols=133 Identities=17% Similarity=0.067 Sum_probs=115.7
Q ss_pred ccHHHhcCCHHHHHHHHHcCCcCC---------CCCchHHHHHHHc---CCHHHHHHHHhhCCCCcccccCCCCChHHHH
Q 039376 85 QQIKQVKTSEDWFREMVETGVKVD---------LGEHPQLRRALVR---KDWKEVERFISENPDTLYAKFTESCGTLFHS 152 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~~~~---------~~g~t~Lh~A~~~---g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~ 152 (289)
...++..++.+.++.|++.|++++ ..|.||||+|+.. |+.+++++|++. +++++.+ +..|.||||+
T Consensus 155 L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~-d~~G~TpLh~ 232 (301)
T 2b0o_E 155 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAK-AADGNTALHY 232 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCC-CTTCCCHHHH
T ss_pred HhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCC-CCCCCCHHHH
Confidence 445888999999999999998864 4789999999997 899999999995 8999999 9999999999
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCH
Q 039376 153 MANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHR 231 (289)
Q Consensus 153 A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~ 231 (289)
|+..|+ .+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++ .|.||||+|+.+|+.
T Consensus 233 A~~~g~---~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 233 AALYNQ---PDCLKLLLKG--RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHTTC---HHHHHHHHHT--TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC--------
T ss_pred HHHcCC---HHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCCc
Confidence 999999 9999999999 999999999999999999999999999999999876 478999999998864
No 107
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.86 E-value=8.9e-22 Score=144.35 Aligned_cols=107 Identities=23% Similarity=0.297 Sum_probs=96.0
Q ss_pred CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHH
Q 039376 143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI 222 (289)
Q Consensus 143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L 222 (289)
+..|.||||+|+..|+ .+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+|||
T Consensus 6 d~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl 79 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGH---AEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPE 79 (115)
T ss_dssp SCSSCCHHHHHHHHTC---HHHHHHHTTT--TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTT
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHH
Confidence 7889999999999999 9999999998 8999999999999999999999999999999999995 89999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHH
Q 039376 223 HCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLL 265 (289)
Q Consensus 223 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l 265 (289)
|+|+..++.+++++|+++|++++ ..+..|.+|-
T Consensus 80 ~~A~~~~~~~~~~~Ll~~ga~~n----------~~~~~~~~~~ 112 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLDAKGADVN----------ARSWGSSHHH 112 (115)
T ss_dssp HHHHTTTCHHHHHHHHTTSSSHH----------HHSCCCC---
T ss_pred HHHHHCCCHHHHHHHHHcCCCCC----------cCCccccccc
Confidence 99999999999999999999999 7777777653
No 108
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=5.4e-21 Score=159.07 Aligned_cols=113 Identities=27% Similarity=0.354 Sum_probs=103.9
Q ss_pred CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-CCCCCH
Q 039376 143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRN-RIGQCP 221 (289)
Q Consensus 143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~-~~g~t~ 221 (289)
+..|.||||+|+..|+ .+++++|++ +++++.++..|+||||+|+..|+.+++++|+++|+++ +.++ ..|+||
T Consensus 42 ~~~g~t~L~~A~~~g~---~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~ 114 (244)
T 3ui2_A 42 VSEYETPWWTAARKAD---EQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTA 114 (244)
T ss_dssp HHHHHHHHHHHHTTTC---HHHHHHTTT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCH
T ss_pred ccCCCCHHHHHHHcCC---HHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCH
Confidence 4578999999999999 999999998 5899999999999999999999999999999999996 8888 789999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhC
Q 039376 222 IHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFN 272 (289)
Q Consensus 222 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g 272 (289)
||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..+
T Consensus 115 L~~A~~~g~~~~v~~Ll~~ga~~~----------~~d~~g~t~l~~A~~~~ 155 (244)
T 3ui2_A 115 LHMAAGYVRPEVVEALVELGADIE----------VEDERGLTALELAREIL 155 (244)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTCCCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCC----------CCCCCCCcHHHHHHHHH
Confidence 999999999999999999999999 77778888888777543
No 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=1.5e-19 Score=153.14 Aligned_cols=154 Identities=17% Similarity=0.076 Sum_probs=127.3
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhhCCCC-----cccc------------------c-------CCCCChHHHHHHhcC
Q 039376 108 DLGEHPQLRRALVRKDWKEVERFISENPDT-----LYAK------------------F-------TESCGTLFHSMANIN 157 (289)
Q Consensus 108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~-----~~~~------------------~-------~~~~~t~Lh~A~~~g 157 (289)
|..+.+.++++...|+..+.+++.. .-.. +... . .....++|+.|+..|
T Consensus 63 d~~~~~~l~~~~~~GN~~~n~i~e~-~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~ 141 (278)
T 1dcq_A 63 DVLGTSELLLAKNIGNAGFNEIMEC-CLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR 141 (278)
T ss_dssp SCCCGGGGHHHHHSCHHHHHHHHTT-TCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHcCcHHHHHHHHh-hCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence 6678889999998888776664432 1100 0000 0 011246899999999
Q ss_pred CchHHHHHHHHHhccCCCC------ccccCCCCCCHHHHHHHh---CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Q 039376 158 EDEAHRLLDEFLDMISPLD------LEETDTSGGTPLTSAAIV---GNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARS 228 (289)
Q Consensus 158 ~~~~~~~v~~Ll~~~~g~~------~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~ 228 (289)
. .+.+..++.. |.+ ++..+..|.||||+|+.. |+.+++++|+++|+++ +.+|..|+||||+|+..
T Consensus 142 d---~~~~~~ll~~--g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~ 215 (278)
T 1dcq_A 142 D---IFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLT 215 (278)
T ss_dssp C---HHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHT
T ss_pred c---cHHHHHHHHh--hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHc
Confidence 9 9999999998 888 445588999999999999 8999999999999996 99999999999999999
Q ss_pred CCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376 229 GHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT 278 (289)
Q Consensus 229 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~ 278 (289)
|+.+++++|+++|++++ ..+..|.||||+|+..|+.++..
T Consensus 216 g~~~~v~~Ll~~gad~~----------~~d~~g~tpL~~A~~~~~~~~v~ 255 (278)
T 1dcq_A 216 DNAECLKLLLRGKASIE----------IANESGETPLDIAKRLKHEHCEE 255 (278)
T ss_dssp TCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHcCCCCC----------CccCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999999999 99999999999999999987543
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.83 E-value=5.9e-21 Score=139.92 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=99.7
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376 108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP 187 (289)
Q Consensus 108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~ 187 (289)
|..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..++ .+++++|++. |++++.++..|.||
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-d~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~d~~g~tp 78 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNAR-SKDGNTPLHLAAKNGH---AEIVKLLLAK--GADVNARSKDGNTP 78 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCC-CSSSCCTTHHHHTTTC---HHHHHHHTTT--TCCTTCCCTTCCCT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-CCCCCCHHHHHHHcCc---HHHHHHHHHc--CCCCcccCCCCCCH
Confidence 6789999999999999999999998 58899998 9999999999999999 9999999999 99999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHH
Q 039376 188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI 222 (289)
Q Consensus 188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L 222 (289)
||+|+..|+.+++++|+++|+++ +.++..|.+|-
T Consensus 79 l~~A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~ 112 (115)
T 2l6b_A 79 EHLAKKNGHHEIVKLLDAKGADV-NARSWGSSHHH 112 (115)
T ss_dssp THHHHTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred HHHHHHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence 99999999999999999999995 99999998874
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=1.4e-19 Score=165.70 Aligned_cols=128 Identities=19% Similarity=0.115 Sum_probs=110.3
Q ss_pred ccHHHhcCCHHHHHHHHHcCCcC---------CCCCchHHHHHHH---cCCHHHHHHHHhhCCCCcccccCCCCChHHHH
Q 039376 85 QQIKQVKTSEDWFREMVETGVKV---------DLGEHPQLRRALV---RKDWKEVERFISENPDTLYAKFTESCGTLFHS 152 (289)
Q Consensus 85 ~~~~~~~~~~~~~~~Ll~~g~~~---------~~~g~t~Lh~A~~---~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~ 152 (289)
.+.|+..++.+.++.|++.|+++ +..|.||||+|++ .|+.+++++||+ .|++++.+ +..|.||||+
T Consensus 136 L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~-~ga~vn~~-d~~g~TpLh~ 213 (497)
T 3lvq_E 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAK-AADGNTALHY 213 (497)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH-HSCCTTCC-CSSSCCHHHH
T ss_pred HHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHH-cCCCCCcc-CCCCCcHHHH
Confidence 45588999999999999999986 4479999999976 999999999999 58999999 9999999999
Q ss_pred HHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Q 039376 153 MANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAA 226 (289)
Q Consensus 153 A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~ 226 (289)
|+..|+ .+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++. +. +|+|.+.
T Consensus 214 A~~~g~---~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~-~~------~~~h~~~ 275 (497)
T 3lvq_E 214 AALYNQ---PDCLKLLLKG--RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT-FA------FPLHVDY 275 (497)
T ss_dssp HTTTTC---HHHHHHHHHT--CCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred HHHcCC---HHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC-CC------Ccceeec
Confidence 999999 9999999999 9999999999999999999999999999999999995 55 4555544
No 112
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=8e-20 Score=160.49 Aligned_cols=122 Identities=20% Similarity=0.186 Sum_probs=113.5
Q ss_pred CCCCChHHHHHHhc-CCchHHHHHHHHHhccCCCCccccC--CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCC
Q 039376 143 TESCGTLFHSMANI-NEDEAHRLLDEFLDMISPLDLEETD--TSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQ 219 (289)
Q Consensus 143 ~~~~~t~Lh~A~~~-g~~~~~~~v~~Ll~~~~g~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~ 219 (289)
...+.|+||.|+.. ++ .+++++|++. |++++..+ ..|.||||+|+..|+.+++++|+++|+++ +..|..|+
T Consensus 196 ~~~~~t~L~~Aa~~~g~---~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~ 269 (368)
T 3jue_A 196 SLHPGALLFRASGHPPS---LPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGR 269 (368)
T ss_dssp -CCHHHHHHHHTSSSCC---HHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred cCCCCcHHHHHHHccCC---HHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCC
Confidence 34566899999999 99 9999999999 99999988 89999999999999999999999999996 99999999
Q ss_pred CHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376 220 CPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN 280 (289)
Q Consensus 220 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~ 280 (289)
||||+|+..|+.+++++|+++|++++ ..+..|.|||++|+..|+.++...+
T Consensus 270 TpLh~A~~~g~~~~v~~LL~~Gad~~----------~~d~~G~TpL~~A~~~g~~~iv~lL 320 (368)
T 3jue_A 270 GPLHHATILGHTGLACLFLKRGADLG----------ARDSEGRDPLTIAMETANADIVTLL 320 (368)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHcCcHHHHHHHHHCcCCCC----------CcCCCCCCHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999 9999999999999999998865444
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.77 E-value=2.1e-18 Score=125.44 Aligned_cols=89 Identities=19% Similarity=0.331 Sum_probs=69.9
Q ss_pred CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHH
Q 039376 143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI 222 (289)
Q Consensus 143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L 222 (289)
+..|.||||+|+..|+ .+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|+|||
T Consensus 21 ~~~g~t~L~~A~~~g~---~~~v~~Ll~~--g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl 94 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQ---DDEVRILMAN--GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAF 94 (110)
T ss_dssp -CCHHHHHHHHHHHTC---HHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred CCccchHHHHHHHcCC---HHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHH
Confidence 5677788888888888 8888888877 7777777777888888888888888888888888774 77777888888
Q ss_pred HHHHHcCCHHHHHHH
Q 039376 223 HCAARSGHRETVEYL 237 (289)
Q Consensus 223 ~~A~~~~~~~~~~~L 237 (289)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 888888888877766
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.75 E-value=6.5e-18 Score=122.77 Aligned_cols=90 Identities=22% Similarity=0.204 Sum_probs=84.7
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCC
Q 039376 107 VDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGT 186 (289)
Q Consensus 107 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t 186 (289)
.+..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+ .+++++|++. |++++.++..|+|
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~-d~~g~tpLh~A~~~~~---~~~v~~Ll~~--ga~~~~~d~~g~t 92 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAK-DKNGSTPLHLAARNGH---LEVVKLLLEA--GADVXAQDKFGKT 92 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCccccccCCCc
Confidence 37789999999999999999999998 58999999 9999999999999999 9999999999 9999999999999
Q ss_pred HHHHHHHhCCHHHHHHH
Q 039376 187 PLTSAAIVGNTKAAKIL 203 (289)
Q Consensus 187 ~L~~A~~~g~~~~v~~L 203 (289)
|||+|+..|+.+++++|
T Consensus 93 pl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 93 AFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHh
Confidence 99999999999999987
No 115
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=39.36 E-value=54 Score=29.22 Aligned_cols=11 Identities=18% Similarity=0.133 Sum_probs=4.5
Q ss_pred HHHHcCCHHHH
Q 039376 117 RALVRKDWKEV 127 (289)
Q Consensus 117 ~A~~~g~~~~v 127 (289)
..++.|+.+.+
T Consensus 114 ~~~~~g~~~~A 124 (501)
T 4g26_A 114 LAVAKDDPEMA 124 (501)
T ss_dssp HHHHHTCHHHH
T ss_pred HHHhcCCHHHH
Confidence 33444444433
No 116
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=30.55 E-value=1.1e+02 Score=26.66 Aligned_cols=45 Identities=7% Similarity=-0.045 Sum_probs=28.0
Q ss_pred HHhcCCHHHHHHHHHcCCcCC-----------------CCCchHHHHHHHcCCHHHHHHHHh
Q 039376 88 KQVKTSEDWFREMVETGVKVD-----------------LGEHPQLRRALVRKDWKEVERFIS 132 (289)
Q Consensus 88 ~~~~~~~~~~~~Ll~~g~~~~-----------------~~g~t~Lh~A~~~g~~~~v~~ll~ 132 (289)
.++.+....++..+..|.+++ .-|.|.+|+|++..+.+++..|+.
T Consensus 29 gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 445566666666666655532 146677777777777777776665
No 117
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=23.79 E-value=60 Score=17.64 Aligned_cols=17 Identities=35% Similarity=0.360 Sum_probs=11.9
Q ss_pred HHHHHHcCCHHHHHHHH
Q 039376 222 IHCAARSGHRETVEYLL 238 (289)
Q Consensus 222 L~~A~~~~~~~~~~~Ll 238 (289)
+..||..|+.+.++.|-
T Consensus 17 iyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 45677777777777664
Done!