AmiGO: BLAST Results


BLAST match view associations BLAST with STRS1 STRS1 STRS1 STRESS RESPONSE SUPPRESSOR 1	protein from Arabidopsis thaliana	3.5e-191
BLAST match view associations BLAST with DBP3 DBP3 DBP3	gene_product from Candida albicans	6.5e-106
BLAST match view associations BLAST with DBP3 DBP3 DBP3 RNA-Dependent ATPase, member of DExD/H-box family	gene from Saccharomyces cerevisiae	6.5e-106
BLAST match view associations BLAST with AT5G63120 AT5G63120 AT5G63120	protein from Arabidopsis thaliana	4.7e-96
BLAST match view associations BLAST with RH20 RH20 RH20 RNA helicase 20	protein from Arabidopsis thaliana	1.0e-91
BLAST match view associations BLAST with ddx17 ddx17 ddx17 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.1e-91
BLAST match view associations BLAST with DBP2 DBP2 DBP2	gene_product from Candida albicans	5.7e-91
BLAST match view associations BLAST with si:dkey-156n14.5 si:dkey-156n14.5 si:dkey-156n14.5	gene_product from Danio rerio	1.9e-90
BLAST match view associations BLAST with ddx5 ddx5 ddx5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	gene_product from Danio rerio	1.1e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Uncharacterized protein	protein from Bos taurus	1.4e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Uncharacterized protein	protein from Canis lupus familiaris	1.4e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Probable ATP-dependent RNA helicase DDX5	protein from Homo sapiens	1.4e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Probable ATP-dependent RNA helicase DDX5	protein from Homo sapiens	1.4e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Probable ATP-dependent RNA helicase DDX5	protein from Pongo abelii	1.4e-89
BLAST match view associations BLAST with Ddx5 Ddx5 Ddx5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein from Mus musculus	1.4e-89
BLAST match view associations BLAST with Ddx5 Ddx5 Ddx5 DEAD (Asp-Glu-Ala-Asp) box helicase 5	gene from Rattus norvegicus	1.4e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Probable ATP-dependent RNA helicase DDX5	protein from Macaca fascicularis	1.7e-89
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Gallus gallus	2.2e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Uncharacterized protein	protein from Gallus gallus	2.8e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Uncharacterized protein	protein from Gallus gallus	2.8e-89
BLAST match view associations BLAST with DBP2 DBP2 DBP2 ATP-dependent RNA helicase of the DEAD-box protein family	gene from Saccharomyces cerevisiae	4.6e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Probable ATP-dependent RNA helicase DDX5	protein from Pan troglodytes	7.5e-89
BLAST match view associations BLAST with DDX17 DDX17 DDX17 DDX17 protein	protein from Bos taurus	1.2e-88
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-88
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-88
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Probable ATP-dependent RNA helicase DDX17	protein from Homo sapiens	1.2e-88
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Probable ATP-dependent RNA helicase DDX17	protein from Homo sapiens	1.2e-88
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Sus scrofa	1.2e-88
BLAST match view associations BLAST with Ddx17 Ddx17 Ddx17 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein from Mus musculus	1.2e-88
BLAST match view associations BLAST with F58E10.3 F58E10.3 F58E10.3	gene from Caenorhabditis elegans	3.2e-88
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Probable ATP-dependent RNA helicase DDX17	protein from Homo sapiens	1.8e-87
BLAST match view associations BLAST with DBP2 DBP2 DBP2 ATP-dependent RNA helicase DBP2	protein from Magnaporthe oryzae 70-15	9.9e-87
BLAST match view associations BLAST with CG10077 CG10077 CG10077	protein from Drosophila melanogaster	8.9e-86
BLAST match view associations BLAST with CG10777 CG10777 CG10777	protein from Drosophila melanogaster	3.4e-84
BLAST match view associations BLAST with CG7878 CG7878 CG7878	protein from Drosophila melanogaster	5.0e-83
BLAST match view associations BLAST with Rm62 Rm62 Rm62	protein from Drosophila melanogaster	2.2e-82
BLAST match view associations BLAST with AT5G14610 AT5G14610 AT5G14610	protein from Arabidopsis thaliana	1.5e-81
BLAST match view associations BLAST with PF14_0437 PF14_0437 PF14_0437 helicase, truncated, putative	gene from Plasmodium falciparum	1.5e-81
BLAST match view associations BLAST with PF14_0437 PF14_0437 PF14_0437 Helicase, putative	protein from Plasmodium falciparum 3D7	1.5e-81
BLAST match view associations BLAST with AT3G06480 AT3G06480 AT3G06480	protein from Arabidopsis thaliana	3.3e-79
BLAST match view associations BLAST with DDX46 DDX46 DDX46 Uncharacterized protein	protein from Gallus gallus	1.1e-78
BLAST match view associations BLAST with DRH1 DRH1 DRH1 DEAD box RNA helicase 1	protein from Arabidopsis thaliana	2.3e-78
BLAST match view associations BLAST with DDX46 DDX46 DDX46 Uncharacterized protein	protein from Bos taurus	7.5e-78
BLAST match view associations BLAST with DDX46 DDX46 DDX46 Uncharacterized protein	protein from Canis lupus familiaris	7.5e-78
BLAST match view associations BLAST with DDX46 DDX46 DDX46 Probable ATP-dependent RNA helicase DDX46	protein from Homo sapiens	7.5e-78
BLAST match view associations BLAST with DDX46 DDX46 DDX46 Uncharacterized protein	protein from Sus scrofa	7.5e-78
BLAST match view associations BLAST with Ddx46 Ddx46 Ddx46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein from Mus musculus	7.5e-78
BLAST match view associations BLAST with Ddx46 Ddx46 Ddx46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	gene from Rattus norvegicus	7.5e-78
BLAST match view associations BLAST with ddx46 ddx46 ddx46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	gene_product from Danio rerio	8.5e-77
BLAST match view associations BLAST with DDB_G0281925 DDB_G0281925 DDB_G0281925 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	1.5e-76
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Probable ATP-dependent RNA helicase DDX5	protein from Homo sapiens	1.5e-76
BLAST match view associations BLAST with RCF1 RCF1 RCF1 regulator of CBF gene expression 1	protein from Arabidopsis thaliana	2.5e-75
BLAST match view associations BLAST with PFL1310c PFL1310c PFL1310c ATP-dependent RNA helicase, putative	gene from Plasmodium falciparum	3.2e-75
BLAST match view associations BLAST with DDX43 DDX43 DDX43 Probable ATP-dependent RNA helicase DDX43	protein from Homo sapiens	3.5e-75
BLAST match view associations BLAST with ddx43 ddx43 ddx43 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	gene_product from Danio rerio	5.7e-75
BLAST match view associations BLAST with LOC100524536 LOC100524536 LOC100524536 Uncharacterized protein	protein from Sus scrofa	4.0e-74
BLAST match view associations BLAST with I3LHW0 I3LHW0 I3LHW0 Uncharacterized protein	protein from Sus scrofa	4.0e-74
BLAST match view associations BLAST with helB1 helB1 helB1 putative RNA splicing factor	gene from Dictyostelium discoideum	1.3e-73
BLAST match view associations BLAST with DDX43 DDX43 DDX43 Uncharacterized protein	protein from Bos taurus	1.7e-73
BLAST match view associations BLAST with DDX43 DDX43 DDX43 Uncharacterized protein	protein from Sus scrofa	1.7e-73
BLAST match view associations BLAST with PRP5 PRP5 PRP5 Pre-mRNA-processing ATP-dependent RNA helicase PRP5	protein from Magnaporthe oryzae 70-15	1.7e-73
BLAST match view associations BLAST with E9PT29 E9PT29 E9PT29 Uncharacterized protein	protein from Rattus norvegicus	5.9e-73
BLAST match view associations BLAST with Y54G11A.3 Y54G11A.3 Y54G11A.3	gene from Caenorhabditis elegans	5.9e-73
BLAST match view associations BLAST with DDX43 DDX43 DDX43 Uncharacterized protein	protein from Gallus gallus	1.6e-72
BLAST match view associations BLAST with AT2G47330 AT2G47330 AT2G47330	protein from Arabidopsis thaliana	1.6e-72
BLAST match view associations BLAST with AT2G42520 AT2G42520 AT2G42520	protein from Arabidopsis thaliana	2.0e-72
BLAST match view associations BLAST with AT3G58570 AT3G58570 AT3G58570	protein from Arabidopsis thaliana	2.5e-72
BLAST match view associations BLAST with DDX43 DDX43 DDX43 Uncharacterized protein	protein from Gallus gallus	3.2e-72
BLAST match view associations BLAST with DDX42 DDX42 DDX42 Uncharacterized protein	protein from Bos taurus	4.7e-72
BLAST match view associations BLAST with F53H1.1 F53H1.1 F53H1.1	gene from Caenorhabditis elegans	4.7e-72
BLAST match view associations BLAST with LOC100300937 LOC100300937 LOC100300937 Uncharacterized protein	protein from Bos taurus	2.9e-71
BLAST match view associations BLAST with DDX42 DDX42 DDX42 Uncharacterized protein	protein from Canis lupus familiaris	4.2e-71
BLAST match view associations BLAST with DDX42 DDX42 DDX42 ATP-dependent RNA helicase DDX42	protein from Homo sapiens	4.2e-71
BLAST match view associations BLAST with DDX42 DDX42 DDX42 Uncharacterized protein	protein from Sus scrofa	4.2e-71
BLAST match view associations BLAST with CG6418 CG6418 CG6418	protein from Drosophila melanogaster	7.7e-71
BLAST match view associations BLAST with DDX42 DDX42 DDX42 ATP-dependent RNA helicase DDX42	protein from Pongo abelii	8.6e-71
BLAST match view associations BLAST with Ddx42 Ddx42 Ddx42 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein from Mus musculus	1.4e-70
BLAST match view associations BLAST with Ddx42 Ddx42 Ddx42 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	gene from Rattus norvegicus	1.8e-70
BLAST match view associations BLAST with AT3G58510 AT3G58510 AT3G58510	protein from Arabidopsis thaliana	2.1e-70
BLAST match view associations BLAST with DDX42 DDX42 DDX42 ATP-dependent RNA helicase DDX42	protein from Gallus gallus	9.8e-70
BLAST match view associations BLAST with DDX42 DDX42 DDX42 ATP-dependent RNA helicase DDX42	protein from Gallus gallus	9.8e-70
BLAST match view associations BLAST with DDX42 DDX42 DDX42 ATP-dependent RNA helicase DDX42	protein from Gallus gallus	9.8e-70
BLAST match view associations BLAST with ddx42 ddx42 ddx42 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	gene_product from Danio rerio	2.7e-68
BLAST match view associations BLAST with CG6227 CG6227 CG6227	protein from Drosophila melanogaster	1.4e-67
BLAST match view associations BLAST with vbh-1 vbh-1 vbh-1	gene from Caenorhabditis elegans	6.5e-67
BLAST match view associations BLAST with AT3G09620 AT3G09620 AT3G09620	protein from Arabidopsis thaliana	1.4e-66
BLAST match view associations BLAST with ddx-23 ddx-23 ddx-23	gene from Caenorhabditis elegans	2.4e-66
BLAST match view associations BLAST with Ddx41 Ddx41 Ddx41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	gene from Rattus norvegicus	5.8e-66
BLAST match view associations BLAST with PFE0925c PFE0925c PFE0925c snrnp protein, putative	gene from Plasmodium falciparum	1.2e-65
BLAST match view associations BLAST with PFE0925c PFE0925c PFE0925c Snrnp protein, putative	protein from Plasmodium falciparum 3D7	1.2e-65
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Escherichia coli K-12	1.2e-65
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039378
        (600 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2034481 - symbol:STRS1 "STRESS RESPONSE SUPPRE...  1837  3.5e-191  2
CGD|CAL0005460 - symbol:DBP3 species:5476 "Candida albica...  1048  6.5e-106  1
SGD|S000003046 - symbol:DBP3 "RNA-Dependent ATPase, membe...  1048  6.5e-106  1
POMBASE|SPBC17D1.06 - symbol:dbp3 "ATP-dependent RNA heli...   959  1.8e-96   1
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi...   955  4.7e-96   1
ASPGD|ASPL0000069536 - symbol:AN7424 species:162425 "Emer...   945  5.3e-95   1
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie...   914  1.0e-91   1
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli...   911  2.1e-91   1
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli...   911  2.1e-91   1
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica...   907  5.7e-91   1
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke...   902  1.9e-90   1
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala...   895  1.1e-89   1
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer...   894  1.4e-89   1
UNIPROTKB|F1MBQ8 - symbol:DDX5 "Uncharacterized protein" ...   894  1.4e-89   1
UNIPROTKB|F1PEA6 - symbol:DDX5 "Uncharacterized protein" ...   894  1.4e-89   1
UNIPROTKB|J3KTA4 - symbol:DDX5 "Probable ATP-dependent RN...   894  1.4e-89   1
UNIPROTKB|P17844 - symbol:DDX5 "Probable ATP-dependent RN...   894  1.4e-89   1
UNIPROTKB|Q5R4I9 - symbol:DDX5 "Probable ATP-dependent RN...   894  1.4e-89   1
MGI|MGI:105037 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box ...   894  1.4e-89   1
RGD|619906 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box heli...   894  1.4e-89   1
UNIPROTKB|Q4R6M5 - symbol:DDX5 "Probable ATP-dependent RN...   893  1.7e-89   1
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"...   892  2.2e-89   1
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ...   891  2.8e-89   1
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ...   891  2.8e-89   1
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ...   889  4.6e-89   1
UNIPROTKB|A5A6J2 - symbol:DDX5 "Probable ATP-dependent RN...   887  7.5e-89   1
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"...   885  1.2e-88   1
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"...   885  1.2e-88   1
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"...   885  1.2e-88   1
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R...   885  1.2e-88   1
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R...   885  1.2e-88   1
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"...   885  1.2e-88   1
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo...   885  1.2e-88   1
WB|WBGene00010260 - symbol:F58E10.3 species:6239 "Caenorh...   881  3.2e-88   1
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R...   874  1.8e-87   1
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas...   867  9.9e-87   1
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ...   858  8.9e-86   1
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ...   843  3.4e-84   1
FB|FBgn0037549 - symbol:CG7878 species:7227 "Drosophila m...   832  5.0e-83   1
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph...   826  2.2e-82   1
TAIR|locus:2222617 - symbol:AT5G14610 species:3702 "Arabi...   794  1.5e-81   2
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase...   818  1.5e-81   1
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ...   818  1.5e-81   1
TAIR|locus:2081061 - symbol:AT3G06480 species:3702 "Arabi...   796  3.3e-79   1
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"...   762  1.1e-78   2
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1...   788  2.3e-78   1
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"...   758  7.5e-78   2
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"...   758  7.5e-78   2
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R...   758  7.5e-78   2
UNIPROTKB|I3LR20 - symbol:DDX46 "Uncharacterized protein"...   758  7.5e-78   2
MGI|MGI:1920895 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) bo...   758  7.5e-78   2
RGD|708480 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box pol...   758  7.5e-78   2
UNIPROTKB|Q62780 - symbol:Ddx46 "Probable ATP-dependent R...   758  7.5e-78   2
ZFIN|ZDB-GENE-030131-667 - symbol:ddx46 "DEAD (Asp-Glu-Al...   749  8.5e-77   2
DICTYBASE|DDB_G0281925 - symbol:DDB_G0281925 "DEAD/DEAH b...   771  1.5e-76   1
UNIPROTKB|B4DLW8 - symbol:DDX5 "Probable ATP-dependent RN...   771  1.5e-76   1
TAIR|locus:2037416 - symbol:RCF1 "regulator of CBF gene e...   765  2.5e-75   1
GENEDB_PFALCIPARUM|PFL1310c - symbol:PFL1310c "ATP-depend...   624  3.2e-75   2
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R...   758  3.5e-75   1
ZFIN|ZDB-GENE-080204-77 - symbol:ddx43 "DEAD (Asp-Glu-Ala...   756  5.7e-75   1
UNIPROTKB|F1SQ03 - symbol:LOC100524536 "Uncharacterized p...   748  4.0e-74   1
UNIPROTKB|I3LHW0 - symbol:I3LHW0 "Uncharacterized protein...   748  4.0e-74   1
DICTYBASE|DDB_G0275443 - symbol:helB1 "putative RNA splic...   749  1.3e-73   1
UNIPROTKB|E1BII7 - symbol:DDX43 "Uncharacterized protein"...   742  1.7e-73   1
UNIPROTKB|F1S0I6 - symbol:DDX43 "Uncharacterized protein"...   742  1.7e-73   1
UNIPROTKB|A4RN46 - symbol:PRP5 "Pre-mRNA-processing ATP-d...   742  1.7e-73   1
UNIPROTKB|E9PT29 - symbol:Ddx17 "Protein Ddx17" species:1...   737  5.9e-73   1
WB|WBGene00013214 - symbol:Y54G11A.3 species:6239 "Caenor...   737  5.9e-73   1
UNIPROTKB|F1NVJ6 - symbol:DDX43 "Uncharacterized protein"...   733  1.6e-72   1
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi...   733  1.6e-72   1
TAIR|locus:2041549 - symbol:AT2G42520 species:3702 "Arabi...   732  2.0e-72   1
TAIR|locus:2076436 - symbol:AT3G58570 species:3702 "Arabi...   731  2.5e-72   1
UNIPROTKB|F1NQ09 - symbol:DDX43 "Uncharacterized protein"...   730  3.2e-72   1
UNIPROTKB|E1BJD2 - symbol:DDX42 "Uncharacterized protein"...   708  4.7e-72   2
WB|WBGene00018776 - symbol:F53H1.1 species:6239 "Caenorha...   706  4.7e-72   2
UNIPROTKB|G3MYF0 - symbol:LOC100300937 "Uncharacterized p...   721  2.9e-71   1
UNIPROTKB|E2RFF1 - symbol:DDX42 "Uncharacterized protein"...   699  4.2e-71   2
UNIPROTKB|Q86XP3 - symbol:DDX42 "ATP-dependent RNA helica...   699  4.2e-71   2
UNIPROTKB|F1RSJ7 - symbol:DDX42 "Uncharacterized protein"...   699  4.2e-71   2
FB|FBgn0036104 - symbol:CG6418 species:7227 "Drosophila m...   717  7.7e-71   1
UNIPROTKB|Q5R7D1 - symbol:DDX42 "ATP-dependent RNA helica...   696  8.6e-71   2
MGI|MGI:1919297 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) bo...   694  1.4e-70   2
RGD|1304909 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box po...   693  1.8e-70   2
TAIR|locus:2076351 - symbol:AT3G58510 species:3702 "Arabi...   713  2.1e-70   1
UNIPROTKB|F1NJ40 - symbol:DDX42 "ATP-dependent RNA helica...   686  9.8e-70   2
UNIPROTKB|F1P0H1 - symbol:DDX42 "ATP-dependent RNA helica...   686  9.8e-70   2
UNIPROTKB|Q5F485 - symbol:DDX42 "ATP-dependent RNA helica...   686  9.8e-70   2
ASPGD|ASPL0000055571 - symbol:AN1266 species:162425 "Emer...   711  2.1e-69   1
POMBASE|SPCC10H11.01 - symbol:prp11 "ATP-dependent RNA he...   704  3.3e-69   1
ZFIN|ZDB-GENE-050706-53 - symbol:ddx42 "DEAD (Asp-Glu-Ala...   693  2.7e-68   1
FB|FBgn0030631 - symbol:CG6227 species:7227 "Drosophila m...   695  1.4e-67   1
WB|WBGene00006888 - symbol:vbh-1 species:6239 "Caenorhabd...   680  6.5e-67   1
TAIR|locus:2074899 - symbol:AT3G09620 species:3702 "Arabi...   479  1.4e-66   2
ASPGD|ASPL0000077157 - symbol:AN10557 species:162425 "Eme...   676  1.7e-66   1
RGD|1559513 - symbol:RGD1559513 "similar to DEAD (Asp-Glu...   676  1.7e-66   1
WB|WBGene00017162 - symbol:ddx-23 species:6239 "Caenorhab...   381  2.4e-66   2
RGD|1311758 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box po...   671  5.8e-66   1
GENEDB_PFALCIPARUM|PFE0925c - symbol:PFE0925c "snrnp prot...   380  1.2e-65   2
UNIPROTKB|Q8I0W7 - symbol:PFE0925c "Snrnp protein, putati...   380  1.2e-65   2
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas...   668  1.2e-65   1

WARNING:  Descriptions of 861 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2034481 [details] [associations]
            symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
            "RNA methylation" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
            EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
            OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
            IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
            UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
            PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
            KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
            PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
            GermOnline:AT1G31970 Uniprot:Q9C551
        Length = 537

 Score = 1837 (651.7 bits), Expect = 3.5e-191, Sum P(2) = 3.5e-191
 Identities = 351/446 (78%), Positives = 400/446 (89%)

Query:   158 EEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKNFKNPSPIQSHAWPFLLNGRD 217
             E +  +VVVTGK V+EAKY ALK+F ES LP++VL CCK F+ PSPIQSH WPFLL+GRD
Sbjct:    94 ESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKTFEKPSPIQSHTWPFLLDGRD 153

Query:   218 FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVG---KRVNPLCLVLSPTRELADQIYDVL 274
              IGIAKTGSGKT+AFG+PA+MHVL  +K K +G   K+VNP CLVLSPTRELA QI DVL
Sbjct:   154 LIGIAKTGSGKTLAFGIPAIMHVL--KKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVL 211

Query:   275 NDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVL 334
              +AG+PCG+KS+CVYGG+SK PQI+A+RSGVDIVIGTPGRL DLIE NV  LS+VSFVVL
Sbjct:   212 REAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVL 271

Query:   335 DEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSED 394
             DEADRMLDMGFEEPVRFILS  +  RQMVMFSATWP++VHKLA+E+MDPNP+KV++GS D
Sbjct:   272 DEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVD 331

Query:   395 LAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGW 454
             LAANHDVMQI+EVLD+R+RDQRL+ALLEKYHKSQ+NRVLVFALY++EA+RLE  L++ GW
Sbjct:   332 LAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGW 391

Query:   455 KVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYV 514
             K V+IHG KAQ ERT+SLSLFKEG+CPL+VATDVAARGLDIPDVEVVINY+FPLTTEDYV
Sbjct:   392 KAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYV 451

Query:   515 HRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVKKKESKLY 574
             HRIGRTGRAGKKGV+HTFFT  NK LAGELVNVLREA QVVP  LLKFGTHVKKKESKLY
Sbjct:   452 HRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVPADLLKFGTHVKKKESKLY 511

Query:   575 GAHFREISADAPKAKKITFNNSDDED 600
             GAHF+EI+ADAPKA KITF+NSDDED
Sbjct:   512 GAHFKEIAADAPKATKITFDNSDDED 537

 Score = 38 (18.4 bits), Expect = 3.5e-191, Sum P(2) = 3.5e-191
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query:   141 NGKESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKA 178
             NG E E  + E     K E+        KDV E K +A
Sbjct:    50 NGVEEELSNKEKKKKRKREEKESEKNKKKDVPEKKLEA 87


>CGD|CAL0005460 [details] [associations]
            symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
            ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
            (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
            "RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
            EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
            ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
            GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
            Uniprot:Q5APT8
        Length = 564

 Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
 Identities = 218/434 (50%), Positives = 302/434 (69%)

Query:   166 VTGKDVKEAKYKALKSFTESKLPDDVLGCCKNFKNPSPIQSHAWPFLLNGRDFIGIAKTG 225
             +T +D   +  + + SF + +L   +      F  P+PIQS +WPFLL+G+D IG+A+TG
Sbjct:   141 ITVEDPSSSSLRPILSFDQVQLTSAITSKLSKFDKPTPIQSVSWPFLLSGKDVIGVAETG 200

Query:   226 SGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKS 285
             SGKT AFGVPA+ ++++   G    K ++ LC+  SPTRELA QIYD L +     GV  
Sbjct:   201 SGKTFAFGVPAINNIITT--GNT--KTLSVLCI--SPTRELALQIYDNLIELTADSGVNC 254

Query:   286 VCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGF 345
             V VYGG SK  QI  +++  ++V+ TPGRL+DLI     +L +V+++VLDEADRML+ GF
Sbjct:   255 VAVYGGVSKDDQIRKIKTA-NVVVATPGRLVDLINDGAINLGKVNYLVLDEADRMLEKGF 313

Query:   346 EEPVRFILSKISLA-RQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSED-LAANHDVMQ 403
             EE ++ I+S  S + RQ +MF+ATWP EV +LA  +M+ +PVKV VG  D L+AN  + Q
Sbjct:   314 EEDIKTIISNTSNSERQTLMFTATWPKEVRELANNFMN-SPVKVTVGDRDELSANKRITQ 372

Query:   404 IVEVLDDRSRDQRLLALLEKYH--KSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHG 461
             +VEV++   ++++L+ LL KY+  +S  N++L+FALY+ EA R+EN L+R+ + V AIHG
Sbjct:   373 VVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFSVAAIHG 432

Query:   462 KKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTG 521
               +Q +RT +LS FK G   L++ATDVAARGLDIP+V+VVIN +FPLT EDYVHRIGRTG
Sbjct:   433 DLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTG 492

Query:   522 RAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVKKKESKLYGAHFREI 581
             RAG KG +HT FT   K L+G L N+LR A Q VP+ LLKFG H KKK   +YGA ++++
Sbjct:   493 RAGAKGTAHTLFTEDEKHLSGALCNILRGANQPVPEELLKFGGHTKKKAHSVYGAFYKDV 552

Query:   582 SADAPK-AKKITFN 594
               D  K AKKI F+
Sbjct:   553 --DMTKTAKKIKFD 564


>SGD|S000003046 [details] [associations]
            symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
            family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
            subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
            "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
            GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
            EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
            ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
            MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
            EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
            KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
            KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
            GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
        Length = 523

 Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
 Identities = 219/444 (49%), Positives = 305/444 (68%)

Query:   155 FFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKNFKNPSPIQSHAWPFLLN 214
             +FKE +   + V  +D  +   + L SF    L   +      F  P+PIQ+ AWP+LL+
Sbjct:    94 YFKENE---IAV--EDSLDLALRPLLSFDYLSLDSSIQAEISKFPKPTPIQAVAWPYLLS 148

Query:   215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274
             G+D +G+A+TGSGKT AFGVPA+ H+++++K + +  +V    LV+SPTRELA QIYD L
Sbjct:   149 GKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGI--QV----LVISPTRELASQIYDNL 202

Query:   275 NDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVL 334
                    G++  CVYGG  K  Q   L+    +V+ TPGRL+DL++     LS+V+++VL
Sbjct:   203 IVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQEGSVDLSQVNYLVL 261

Query:   335 DEADRMLDMGFEEPVRFILSKISLA-RQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSE 393
             DEADRML+ GFEE ++ I+ +   + RQ +MF+ATWP EV +LA  +M+ NP+KV +G+ 
Sbjct:   262 DEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMN-NPIKVSIGNT 320

Query:   394 D-LAANHDVMQIVEVLDDRSRDQRLLALLEKYHKS-QRN-RVLVFALYQLEADRLENMLR 450
             D L AN  + QIVEV+D R ++++LL LL+KYH   ++N +VL+FALY+ EA R+E  L+
Sbjct:   321 DQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLK 380

Query:   451 RSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTT 510
              +G+ V AIHG  +Q +RT++L+ FK G   L++ATDVAARGLDIP+V+ VIN +FPLT 
Sbjct:   381 YNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTV 440

Query:   511 EDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVKKKE 570
             EDYVHRIGRTGRAG+ G +HT FT   K LAG LVNVL  A Q VP+ L+KFGTH KKKE
Sbjct:   441 EDYVHRIGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLIKFGTHTKKKE 500

Query:   571 SKLYGAHFREISADAPKAKKITFN 594
                YG+ F+++     K KKITF+
Sbjct:   501 HSAYGSFFKDVDL-TKKPKKITFD 523


>POMBASE|SPBC17D1.06 [details] [associations]
            symbol:dbp3 "ATP-dependent RNA helicase Dbp3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
            "ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
            processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
            GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
            PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
            STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
            GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
            Uniprot:Q10202
        Length = 578

 Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
 Identities = 207/407 (50%), Positives = 281/407 (69%)

Query:   196 KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255
             KN+K P+PIQ+  WP+LL GRD +GIA+TGSGKT+AFG+PA+ ++     G +  K V P
Sbjct:   183 KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYL----NGLSDNKSV-P 237

Query:   256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL 315
               LV+SPTRELA Q Y+ LN   +   +K+V VYGG  K  Q  A ++   ++IGTPGRL
Sbjct:   238 RVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNA-SVIIGTPGRL 296

Query:   316 IDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI-----SLARQMVMFSATWP 370
             +DLI       S+V ++VLDEADRMLD GFE+ +R I+S       + +RQ V FSATWP
Sbjct:   297 LDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWP 356

Query:   371 IEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDD-RSRDQRLLALLEKYHKS-- 427
               V  LA  ++  +PVK+ +GS++LAA+ ++ QIVE+LDD RS+++ L  LL K+  S  
Sbjct:   357 ESVRALAATFLK-DPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGG 415

Query:   428 QRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD 487
             + +++L+F LY+ EA R+E  L R  + VV IHG  +Q  R ++L+ FK G CP++VATD
Sbjct:   416 KDDKILIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGARLQALNDFKSGKCPVLVATD 474

Query:   488 VAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNV 547
             VAARGLDIP V++VIN +FPLT EDYVHRIGRTGRA  KG + TFFT  +K+ AGELVNV
Sbjct:   475 VAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNV 534

Query:   548 LREARQVVPDALLKFGTHVKKKESKLYGAHFREISADAPKAKKITFN 594
             LR+A+Q +P+ L KFGT VK K +  YG+   ++   A  A KI F+
Sbjct:   535 LRQAKQDIPEGLFKFGTAVKPKLNA-YGSRVVDVPVKA--ATKIVFD 578


>TAIR|locus:2162022 [details] [associations]
            symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
            EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
            IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
            UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
            PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
            KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
            OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
            Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
        Length = 591

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 194/412 (47%), Positives = 273/412 (66%)

Query:   150 DETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVL-GCCK-NFKNPSPIQSH 207
             ++ ++ ++ E D  + V G+DV     K +K F ++  PD++L    K  F  P+PIQ+ 
Sbjct:   141 EQDVAMYRTERD--ISVEGRDVP----KPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQ 194

Query:   208 AWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELA 267
              WP  L GRD IGIA+TGSGKT+A+ +PA++HV +  +   +G+   P+ L+L+PTRELA
Sbjct:   195 GWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPR---LGQDDGPIVLILAPTRELA 251

Query:   268 DQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLS 327
              QI +     G   GV+S C+YGG  K PQI  LR GV+IVI TPGRLID++E    +L 
Sbjct:   252 VQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLK 311

Query:   328 EVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVK 387
              V+++VLDEADRMLDMGFE  +R I+S+I   RQ +++SATWP EV  LA +++  +P K
Sbjct:   312 RVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLR-DPYK 370

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
              ++GS DL AN  + Q++E++    +  RLL LL++      +++L+F   +   D++  
Sbjct:   371 AIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDG--SKILIFVETKRGCDQVTR 428

Query:   448 MLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507
              LR  GW  +AIHG K Q ER + L+ FK G  P+M ATDVAARGLD+ D++ V+NY FP
Sbjct:   429 QLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFP 488

Query:   508 LTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDAL 559
              T EDY+HRIGRTGRAG KG++ TFFT+ N   A ELV +L+EA QVVP  L
Sbjct:   489 NTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTL 540


>ASPGD|ASPL0000069536 [details] [associations]
            symbol:AN7424 species:162425 "Emericella nidulans"
            [GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
            from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
            GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
        Length = 488

 Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
 Identities = 207/442 (46%), Positives = 280/442 (63%)

Query:   161 DGQVVVTGKDVKEAKYKALKSFTESKLPD---DVLGCCKNFKNPSPIQSHAWPFLLNGRD 217
             D  + +T     +   + + SF  S LP    D+      F +P+ IQS  WP L  GRD
Sbjct:    55 DHSIKITDASADKPSLRPIISF--SFLPPSNKDLYAPLDGFASPTAIQSATWPLLFAGRD 112

Query:   218 FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277
              IGIA+TGSGKT+AFG+P +  VL + K K   K   PL +V+SPTRELA QIYD L   
Sbjct:   113 VIGIAETGSGKTLAFGLPCLKKVL-DLKTKQ--KSCRPLAVVISPTRELAMQIYDQLVKF 169

Query:   278 GKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEA 337
              +   ++  C++GG  K  Q  AL+S   +V+ TPGRL DL       L  V ++VLDEA
Sbjct:   170 AEKVDIQVACIFGGVKKDEQREALKSAA-VVVATPGRLKDLQNDGSLDLGRVKYLVLDEA 228

Query:   338 DRMLDMGFEEPVRFILSKISLA-RQMVMFSATWPIEVHKLAEEYMDPNPVKVVVG---SE 393
             DRMLD GFE+ ++ I+S + ++ RQ VMF+ATWP  V  LA  +M  +PV V +G   S 
Sbjct:   229 DRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLASTFMT-SPVTVTIGGDPSA 287

Query:   394 DLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSG 453
             D  AN  + Q+VEV+    ++QRL+ +L ++ +   ++VL F LY+ EA R+E +LR  G
Sbjct:   288 DPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAFCLYKKEAMRVERLLRTKG 347

Query:   454 WKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDY 513
             +KV  IHG  +Q ER +SL  FK G   ++VATDVAARGLDIP V++V+N +FPLT EDY
Sbjct:   348 FKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDY 407

Query:   514 VHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVKKKESKL 573
             VHRIGRTGRAG  G + T FT  +KA +G L+NVL+ A Q VP+ALLKFG+ VKKK+   
Sbjct:   408 VHRIGRTGRAGADGHAITLFTETDKAQSGALINVLKAANQEVPEALLKFGSTVKKKQHDA 467

Query:   574 YGAHFREISADAPKAKKITFNN 595
             YGA F+++      A KI F++
Sbjct:   468 YGAFFKDVEP-GKAATKIVFDD 488


>TAIR|locus:2035741 [details] [associations]
            symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
            IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
            UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
            PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
            KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
            OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
            Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
        Length = 501

 Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
 Identities = 195/403 (48%), Positives = 263/403 (65%)

Query:   163 QVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIG 220
             ++ V GKD+     K +KSF +   PD VL   K   F  P+PIQS  WP  + GRD IG
Sbjct:    86 EITVEGKDIP----KPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIG 141

Query:   221 IAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280
             IA+TGSGKT+++ +PA++HV + +   A G    P+ LVL+PTRELA QI    +  G  
Sbjct:   142 IAETGSGKTLSYLLPAIVHV-NAQPMLAHGD--GPIVLVLAPTRELAVQIQQEASKFGSS 198

Query:   281 CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRM 340
               +K+ C+YGG  K PQ+  L+ GV+IVI TPGRLID++E N  +L  V+++VLDEADRM
Sbjct:   199 SKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRM 258

Query:   341 LDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHD 400
             LDMGF+  +R I+S I   RQ + +SATWP EV +L+++++  NP KV++GS DL AN  
Sbjct:   259 LDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLY-NPYKVIIGSSDLKANRA 317

Query:   401 VMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIH 460
             + QIV+V+ +  +  +L+ LLE       +R+LVF   +   D++   LR  GW  ++IH
Sbjct:   318 IRQIVDVISESQKYNKLVKLLEDIMDG--SRILVFLDTKKGCDQITRQLRMDGWPALSIH 375

Query:   461 GKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 520
             G K+Q ER   LS F+ G  P+M ATDVAARGLD+ DV+ VINY FP + EDYVHRIGRT
Sbjct:   376 GDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRT 435

Query:   521 GRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFG 563
             GRAG KG ++TFFT  N   A EL N+L+EA Q V   L   G
Sbjct:   436 GRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELASMG 478


>DICTYBASE|DDB_G0293168 [details] [associations]
            symbol:ddx17 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
            activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
            activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
            RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
            PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
            KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
        Length = 785

 Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
 Identities = 190/398 (47%), Positives = 265/398 (66%)

Query:   163 QVVVTGKDVKEAKYKALKSFTESKLPD----DVLGCCKNFKNPSPIQSHAWPFLLNGRDF 218
             Q+ V G++V       +  FT++  P     +++G    F NP+PIQS AWP  L GRD 
Sbjct:   371 QMTVKGREVPPP----IMQFTQAPFPGYLMKEIIGA--GFPNPTPIQSQAWPIALKGRDI 424

Query:   219 IGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278
             IG+AKTGSGKT+AF +P+++H+  N +   + +   P+ LVL+PTRELA QI +  N  G
Sbjct:   425 IGLAKTGSGKTLAFLLPSIVHI--NAQ-PVLREDDGPIVLVLAPTRELALQIQEETNKFG 481

Query:   279 KPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEAD 338
                 + + CVYGG SK  Q+ AL+ GV+IVI TPGRLID++E    +L  V+++VLDEAD
Sbjct:   482 GTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESGKTNLRRVTYLVLDEAD 541

Query:   339 RMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAAN 398
             RMLDMGFE  +R I+S+I   RQ +MFSATWP EV  LA +++  + ++V +GS ++ AN
Sbjct:   542 RMLDMGFEPQIRKIISQIRPDRQTLMFSATWPKEVQALAHDFLTDH-IQVHIGSTEITAN 600

Query:   399 HDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVA 458
             H+V QIVEV  D  + +R+L+ L    + ++  V+VFA  +   D L+ +L+ SG+K + 
Sbjct:   601 HNVRQIVEVCQDFEKKERMLSFLGSVGRDEK--VIVFAETRKGVDDLQRVLQFSGFKSIG 658

Query:   459 IHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIG 518
             IHG K+Q ER   LS FK G  P+M+ATDVA+RGLDI D++ V+NY FP T E Y+HRIG
Sbjct:   659 IHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIG 718

Query:   519 RTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVP 556
             RT RAG  GVS++  T  N  LA EL+ VL EA+Q +P
Sbjct:   719 RTARAGASGVSYSLLTTDNARLANELIKVLTEAKQKIP 756


>POMBASE|SPBP8B7.16c [details] [associations]
            symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
            species:4896 "Schizosaccharomyces pombe" [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
            EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
            EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
            ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
            EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
            NextBio:20802492 Uniprot:P24782
        Length = 550

 Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
 Identities = 197/423 (46%), Positives = 276/423 (65%)

Query:   143 KESEN----GDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN- 197
             KE EN     D E   + KE++   +VV G +V     K + +F E+  P+ VL   K  
Sbjct:    88 KEHENVRNRSDAEVTEYRKEKE---IVVHGLNVP----KPVTTFEEAGFPNYVLKEVKQL 140

Query:   198 -FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPL 256
              F+ P+PIQ  AWP  ++GRD +GI+ TGSGKT+++ +PA++H+  N +   +     P+
Sbjct:   141 GFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHI--NAQ-PLLSPGDGPI 197

Query:   257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
              LVL+PTRELA QI       GK   +++ CVYGG  + PQI  L  GV+I I TPGRL+
Sbjct:   198 VLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLL 257

Query:   317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKL 376
             D+++ N  +L  V+++VLDEADRMLDMGFE  +R I+ +I   RQ VMFSATWP EV +L
Sbjct:   258 DMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRL 317

Query:   377 AEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFA 436
             A +Y++ + ++V VGS DLAA+H++ QIVEV+D+  +  RL   +E+  K + N+VL+F 
Sbjct:   318 ARDYLN-DYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFT 376

Query:   437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496
               +  AD +   LR+ GW  +AIHG KAQ ER   L+ F+ G  P+MVATDVA+RG+D+ 
Sbjct:   377 GTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVK 436

Query:   497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVP 556
              +  V NY FP  TEDYVHRIGRTGRAG KG ++T+FT+ N   A ELV++L EA+Q + 
Sbjct:   437 GITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDID 496

Query:   557 DAL 559
               L
Sbjct:   497 PKL 499


>CGD|CAL0003204 [details] [associations]
            symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
            EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
            ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
            GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
            Uniprot:Q59LU0
        Length = 562

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 193/432 (44%), Positives = 272/432 (62%)

Query:   150 DETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSH 207
             D  I  F++E++  + V G D+       + +F E+  PD VL   K+  F  P+PIQ  
Sbjct:   103 DRDIEQFRKENE--MTVKGHDIPHP----ITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQ 156

Query:   208 AWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELA 267
              WP  L+GRD IGIA TGSGKT+++ +P+++H+ +  + +  G    P+ LVL+PTRELA
Sbjct:   157 GWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQ-YGD--GPIVLVLAPTRELA 213

Query:   268 DQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLS 327
              QI    +  GK   +++ CVYGG  K PQI  L  GV+I I TPGRLID++E    +L 
Sbjct:   214 VQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDMLEAGKTNLK 273

Query:   328 EVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVK 387
              V+++VLDEADRMLDMGFE  +R I+ +I   RQ +M+SATWP EV +L  +Y++ +P++
Sbjct:   274 RVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLTRDYLN-DPIQ 332

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
             V +GS +LAA+H + Q+VEV+D+ S+  RL+  LE     + N++LVFA  +   D +  
Sbjct:   333 VTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKDNKILVFASTKRTCDEITT 392

Query:   448 MLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507
              LR  GW  +AIHG K Q+ER   L  F++G   +MVATDVAARG+D+  +  VINY  P
Sbjct:   393 YLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMP 452

Query:   508 LTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 567
                EDYVHRIGRTGR G  G + +FFT  N  L G+L  ++REA Q VP  L +F     
Sbjct:   453 GNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMREANQTVPPELQRF----- 507

Query:   568 KKESKLYGAHFR 579
               + + YG+H R
Sbjct:   508 --DRRSYGSHMR 517


>ZFIN|ZDB-GENE-030131-18 [details] [associations]
            symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
            UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
            KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
            Uniprot:F1QBS1
        Length = 671

 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 178/387 (45%), Positives = 262/387 (67%)

Query:   177 KALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
             K + +F +++ P  V+     +NFK P+ IQ+  +P  L+GRD +GIA+TGSGKT+A+ +
Sbjct:    92 KPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLL 151

Query:   235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
             PA++H+  N +   + +   P+CLVL+PTRELA Q+  V  D GK   +KS CVYGG  K
Sbjct:   152 PAIVHI--NHQ-PYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPK 208

Query:   295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
              PQI  L  GV+I I TPGRLID +E+   +L   +++VLDEADRMLDMGFE  +R I+ 
Sbjct:   209 GPQIRDLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 268

Query:   355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414
             +I   RQ +M+SATWP EV +LAE+++  + V++ +G+ +L+ANH+++QIV+V  +  +D
Sbjct:   269 QIRPDRQTLMWSATWPKEVRQLAEDFLQ-DYVQINIGALELSANHNILQIVDVCMENEKD 327

Query:   415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
              +L+ L+E+    + N+ ++F   +   D L   +RR GW  + IHG K+Q ER   L+ 
Sbjct:   328 NKLIQLMEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTE 387

Query:   475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
             F+ G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDYVHRIGRT R+  KG ++TFFT
Sbjct:   388 FRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 447

Query:   535 NHNKALAGELVNVLREARQVVPDALLK 561
               N   A +LV VL EARQ +   LL+
Sbjct:   448 PGNLRQARDLVRVLEEARQAINPKLLQ 474


>ZFIN|ZDB-GENE-030131-925 [details] [associations]
            symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
            ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
        Length = 617

 Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
 Identities = 183/439 (41%), Positives = 276/439 (62%)

Query:   163 QVVVTGKDVKEAKYKALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIG 220
             ++ V G+D      K +  F E+  P  V+     +N+ +P+PIQ+  WP  L+G+D +G
Sbjct:    83 EITVKGRDGP----KPIVKFHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVG 138

Query:   221 IAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280
             IA+TGSGKT+++ +PA++H+ +++     G    P+CLVL+PTRELA Q+  V  + GK 
Sbjct:   139 IAQTGSGKTLSYLLPAIVHI-NHQPFLEHGD--GPICLVLAPTRELAQQVQQVAAEYGKA 195

Query:   281 CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRM 340
               +KS C+YGG  K PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRM
Sbjct:   196 SRIKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRM 255

Query:   341 LDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHD 400
             LDMGFE  +R I+ +I   RQ +M+SATWP EV +LAE+++    +++ VG+  L+ANH+
Sbjct:   256 LDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEY-IQINVGALQLSANHN 314

Query:   401 VMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIH 460
             ++QIV+V +D  ++ +L+ LLE+    + N+ ++F   +   D L   +RR GW  + IH
Sbjct:   315 ILQIVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIH 374

Query:   461 GKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 520
             G K Q ER   L+ FK G  P+++ATDVA+RGLD+ DV+ VIN+ +P  +EDY+HRIGRT
Sbjct:   375 GDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRT 434

Query:   521 GRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVKKKESKLYGAHFRE 580
              R+ K G ++TFFT +N   A +LV+VLREA Q +   L++       +     G  +R+
Sbjct:   435 ARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDRGGRSRGGRGGGYRD 494

Query:   581 ISADAPKAKKITFNN-SDD 598
                D     +  F + S D
Sbjct:   495 DRRDRHSGSRRDFGSYSQD 513


>ASPGD|ASPL0000006660 [details] [associations]
            symbol:AN5931 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
            EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
            ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
            EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
            OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
        Length = 563

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 186/399 (46%), Positives = 265/399 (66%)

Query:   163 QVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIG 220
             ++ V G+DV     + +++F E+  P  VL   K   F+ P+ IQS  WP  L+GRD +G
Sbjct:   127 EMTVQGRDVP----RPVETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVG 182

Query:   221 IAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280
             IA+TGSGKT+++ +PA++H+ + +   A G    P+ L+L+PTRELA QI   ++  GK 
Sbjct:   183 IAETGSGKTLSYCLPAIVHI-NAQPLLAPGD--GPIVLILAPTRELAVQIQAEISKFGKS 239

Query:   281 CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRM 340
               +++ CVYGG  K PQI  L  GV++ I TPGRLID++E    +L  V+++VLDEADRM
Sbjct:   240 SRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRM 299

Query:   341 LDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHD 400
             LDMGFE  +R I+S+I   RQ  M+SATWP EV +LA ++++ N ++V +GS DL+ANH 
Sbjct:   300 LDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLN-NYIQVNIGSMDLSANHR 358

Query:   401 VMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIH 460
             + QIVEV+ +  +  R++  LEK  +++ N+ LVF   +  AD +   LR+ GW  ++IH
Sbjct:   359 ITQIVEVISEFEKRDRMIKHLEKIMENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIH 418

Query:   461 GKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 520
             G K Q ER   L+ FK G  P+MVATDVA+RG+D+ D+  VINY +P  +EDYVHRIGRT
Sbjct:   419 GDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRT 478

Query:   521 GRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDAL 559
             GRAG KG + TFFT  N   A +LV +L EA+Q +   L
Sbjct:   479 GRAGAKGTAITFFTTDNAKQARDLVTILSEAKQQIDPRL 517


>UNIPROTKB|F1MBQ8 [details] [associations]
            symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
            class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
            receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
            receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0043517 "positive regulation of DNA damage response, signal
            transduction by p53 class mediator" evidence=IEA] [GO:0036002
            "pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
            of intracellular estrogen receptor signaling pathway" evidence=IEA]
            [GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
            "circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0003713 "transcription coactivator activity"
            evidence=IEA] [GO:0001701 "in utero embryonic development"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
            GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
            GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
            KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
            EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
            UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
            Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
            NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
        Length = 614

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 172/387 (44%), Positives = 260/387 (67%)

Query:   177 KALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
             K + +F E+  P +V+     +NF  P+ IQ+  WP  L+G D +G+A+TGSGKT+++ +
Sbjct:    91 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 150

Query:   235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
             PA++H+  N +   + +   P+CLVL+PTRELA Q+  V  +  + C +KS C+YGG  K
Sbjct:   151 PAIVHI--NHQ-PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query:   295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
              PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRMLDMGFE  +R I+ 
Sbjct:   208 GPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 267

Query:   355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414
             +I   RQ +M+SATWP EV +LAE+++  + + + +G+ +L+ANH+++QIV+V  D  +D
Sbjct:   268 QIRPDRQTLMWSATWPKEVRQLAEDFLK-DYIHINIGALELSANHNILQIVDVCHDVEKD 326

Query:   415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
             ++L+ L+E+    + N+ +VF   +   D L   +RR GW  + IHG K+Q ER   L+ 
Sbjct:   327 EKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNE 386

Query:   475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
             FK G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT R+ K G ++TFFT
Sbjct:   387 FKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 446

Query:   535 NHNKALAGELVNVLREARQVVPDALLK 561
              +N     +L++VLREA Q +   LL+
Sbjct:   447 PNNIKQVSDLISVLREANQAINPKLLQ 473


>UNIPROTKB|F1PEA6 [details] [associations]
            symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
            activity" evidence=IEA] [GO:0003712 "transcription cofactor
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
            GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
            Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
        Length = 671

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 172/387 (44%), Positives = 260/387 (67%)

Query:   177 KALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
             K + +F E+  P +V+     +NF  P+ IQ+  WP  L+G D +G+A+TGSGKT+++ +
Sbjct:   148 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 207

Query:   235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
             PA++H+  N +   + +   P+CLVL+PTRELA Q+  V  +  + C +KS C+YGG  K
Sbjct:   208 PAIVHI--NHQ-PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 264

Query:   295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
              PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRMLDMGFE  +R I+ 
Sbjct:   265 GPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 324

Query:   355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414
             +I   RQ +M+SATWP EV +LAE+++  + + + +G+ +L+ANH+++QIV+V  D  +D
Sbjct:   325 QIRPDRQTLMWSATWPKEVRQLAEDFLK-DYIHINIGALELSANHNILQIVDVCHDVEKD 383

Query:   415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
             ++L+ L+E+    + N+ +VF   +   D L   +RR GW  + IHG K+Q ER   L+ 
Sbjct:   384 EKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNE 443

Query:   475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
             FK G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT R+ K G ++TFFT
Sbjct:   444 FKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 503

Query:   535 NHNKALAGELVNVLREARQVVPDALLK 561
              +N     +L++VLREA Q +   LL+
Sbjct:   504 PNNIKQVSDLISVLREANQAINPKLLQ 530


>UNIPROTKB|J3KTA4 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003712 "transcription cofactor activity"
            evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
            Ensembl:ENST00000578804 Uniprot:J3KTA4
        Length = 614

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 172/387 (44%), Positives = 260/387 (67%)

Query:   177 KALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
             K + +F E+  P +V+     +NF  P+ IQ+  WP  L+G D +G+A+TGSGKT+++ +
Sbjct:    91 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 150

Query:   235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
             PA++H+  N +   + +   P+CLVL+PTRELA Q+  V  +  + C +KS C+YGG  K
Sbjct:   151 PAIVHI--NHQ-PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query:   295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
              PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRMLDMGFE  +R I+ 
Sbjct:   208 GPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 267

Query:   355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414
             +I   RQ +M+SATWP EV +LAE+++  + + + +G+ +L+ANH+++QIV+V  D  +D
Sbjct:   268 QIRPDRQTLMWSATWPKEVRQLAEDFLK-DYIHINIGALELSANHNILQIVDVCHDVEKD 326

Query:   415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
             ++L+ L+E+    + N+ +VF   +   D L   +RR GW  + IHG K+Q ER   L+ 
Sbjct:   327 EKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNE 386

Query:   475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
             FK G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT R+ K G ++TFFT
Sbjct:   387 FKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 446

Query:   535 NHNKALAGELVNVLREARQVVPDALLK 561
              +N     +L++VLREA Q +   LL+
Sbjct:   447 PNNIKQVSDLISVLREANQAINPKLLQ 473


>UNIPROTKB|P17844 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0001701 "in utero embryonic development" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
            [GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
            "circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
            evidence=IEA] [GO:0045069 "regulation of viral genome replication"
            evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
            evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
            [GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
            evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0043517 "positive regulation of DNA damage response, signal
            transduction by p53 class mediator" evidence=IMP] [GO:0072332
            "intrinsic apoptotic signaling pathway by p53 class mediator"
            evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
            "regulation of skeletal muscle cell differentiation" evidence=ISS]
            [GO:0045667 "regulation of osteoblast differentiation"
            evidence=ISS] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0050681
            "androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
            of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
            "positive regulation of intracellular estrogen receptor signaling
            pathway" evidence=IDA] [GO:0003713 "transcription coactivator
            activity" evidence=IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
            "pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
            GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
            GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
            GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
            GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
            HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
            GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
            EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
            RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
            PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
            IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
            DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
            PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
            Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
            CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
            HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
            InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
            EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
            ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
            Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
        Length = 614

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 172/387 (44%), Positives = 260/387 (67%)

Query:   177 KALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
             K + +F E+  P +V+     +NF  P+ IQ+  WP  L+G D +G+A+TGSGKT+++ +
Sbjct:    91 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 150

Query:   235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
             PA++H+  N +   + +   P+CLVL+PTRELA Q+  V  +  + C +KS C+YGG  K
Sbjct:   151 PAIVHI--NHQ-PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query:   295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
              PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRMLDMGFE  +R I+ 
Sbjct:   208 GPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 267

Query:   355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414
             +I   RQ +M+SATWP EV +LAE+++  + + + +G+ +L+ANH+++QIV+V  D  +D
Sbjct:   268 QIRPDRQTLMWSATWPKEVRQLAEDFLK-DYIHINIGALELSANHNILQIVDVCHDVEKD 326

Query:   415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
             ++L+ L+E+    + N+ +VF   +   D L   +RR GW  + IHG K+Q ER   L+ 
Sbjct:   327 EKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNE 386

Query:   475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
             FK G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT R+ K G ++TFFT
Sbjct:   387 FKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 446

Query:   535 NHNKALAGELVNVLREARQVVPDALLK 561
              +N     +L++VLREA Q +   LL+
Sbjct:   447 PNNIKQVSDLISVLREANQAINPKLLQ 473


>UNIPROTKB|Q5R4I9 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
            activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
            "estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
            "regulation of androgen receptor signaling pathway" evidence=ISS]
            [GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
            mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
            cell differentiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
            GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
            GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
            GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
            GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
            RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
            PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
            Uniprot:Q5R4I9
        Length = 614

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 172/387 (44%), Positives = 260/387 (67%)

Query:   177 KALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
             K + +F E+  P +V+     +NF  P+ IQ+  WP  L+G D +G+A+TGSGKT+++ +
Sbjct:    91 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 150

Query:   235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
             PA++H+  N +   + +   P+CLVL+PTRELA Q+  V  +  + C +KS C+YGG  K
Sbjct:   151 PAIVHI--NHQ-PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query:   295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
              PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRMLDMGFE  +R I+ 
Sbjct:   208 GPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 267

Query:   355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414
             +I   RQ +M+SATWP EV +LAE+++  + + + +G+ +L+ANH+++QIV+V  D  +D
Sbjct:   268 QIRPDRQTLMWSATWPKEVRQLAEDFLK-DYIHINIGALELSANHNILQIVDVCHDVEKD 326

Query:   415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
             ++L+ L+E+    + N+ +VF   +   D L   +RR GW  + IHG K+Q ER   L+ 
Sbjct:   327 EKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNE 386

Query:   475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
             FK G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT R+ K G ++TFFT
Sbjct:   387 FKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 446

Query:   535 NHNKALAGELVNVLREARQVVPDALLK 561
              +N     +L++VLREA Q +   LL+
Sbjct:   447 PNNIKQVSDLISVLREANQAINPKLLQ 473


>MGI|MGI:105037 [details] [associations]
            symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
            species:10090 "Mus musculus" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0001701 "in utero embryonic development"
            evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003712 "transcription cofactor activity" evidence=IDA]
            [GO:0003713 "transcription coactivator activity" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
            activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
            "nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
            acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
            receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0033148 "positive regulation of
            intracellular estrogen receptor signaling pathway" evidence=ISO]
            [GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
            replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=IMP] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
            evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
            [GO:0060765 "regulation of androgen receptor signaling pathway"
            evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
            p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
            skeletal muscle cell differentiation" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
            GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
            GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
            GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
            GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
            GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
            EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
            ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
            UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
            DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
            PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
            Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
        Length = 614

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 172/387 (44%), Positives = 260/387 (67%)

Query:   177 KALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
             K + +F E+  P +V+     +NF  P+ IQ+  WP  L+G D +G+A+TGSGKT+++ +
Sbjct:    91 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 150

Query:   235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
             PA++H+  N +   + +   P+CLVL+PTRELA Q+  V  +  + C +KS C+YGG  K
Sbjct:   151 PAIVHI--NHQ-PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query:   295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
              PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRMLDMGFE  +R I+ 
Sbjct:   208 GPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 267

Query:   355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414
             +I   RQ +M+SATWP EV +LAE+++  + + + +G+ +L+ANH+++QIV+V  D  +D
Sbjct:   268 QIRPDRQTLMWSATWPKEVRQLAEDFLK-DYIHINIGALELSANHNILQIVDVCHDVEKD 326

Query:   415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
             ++L+ L+E+    + N+ +VF   +   D L   +RR GW  + IHG K+Q ER   L+ 
Sbjct:   327 EKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNE 386

Query:   475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
             FK G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT R+ K G ++TFFT
Sbjct:   387 FKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 446

Query:   535 NHNKALAGELVNVLREARQVVPDALLK 561
              +N     +L++VLREA Q +   LL+
Sbjct:   447 PNNIKQVSDLISVLREANQAINPKLLQ 473


>RGD|619906 [details] [associations]
            symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
            "Rattus norvegicus" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IEA;ISO]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
            development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
            activity" evidence=ISO] [GO:0003713 "transcription coactivator
            activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
            evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
            rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
            evidence=IDA] [GO:0030331 "estrogen receptor binding"
            evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISO] [GO:0033148 "positive regulation of intracellular
            estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
            "pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
            replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=ISO] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
            evidence=IDA] [GO:0050681 "androgen receptor binding"
            evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
            signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
            signaling pathway by p53 class mediator" evidence=IEA;ISO]
            [GO:2001014 "regulation of skeletal muscle cell differentiation"
            evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
            GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
            GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
            EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
            GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
            HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
            GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
            EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
            UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
            Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
            UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
            Genevestigator:Q6AYI1 Uniprot:Q6AYI1
        Length = 615

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 172/387 (44%), Positives = 260/387 (67%)

Query:   177 KALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
             K + +F E+  P +V+     +NF  P+ IQ+  WP  L+G D +G+A+TGSGKT+++ +
Sbjct:    91 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 150

Query:   235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
             PA++H+  N +   + +   P+CLVL+PTRELA Q+  V  +  + C +KS C+YGG  K
Sbjct:   151 PAIVHI--NHQ-PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query:   295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
              PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRMLDMGFE  +R I+ 
Sbjct:   208 GPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 267

Query:   355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414
             +I   RQ +M+SATWP EV +LAE+++  + + + +G+ +L+ANH+++QIV+V  D  +D
Sbjct:   268 QIRPDRQTLMWSATWPKEVRQLAEDFLK-DYIHINIGALELSANHNILQIVDVCHDVEKD 326

Query:   415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
             ++L+ L+E+    + N+ +VF   +   D L   +RR GW  + IHG K+Q ER   L+ 
Sbjct:   327 EKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNE 386

Query:   475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
             FK G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT R+ K G ++TFFT
Sbjct:   387 FKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 446

Query:   535 NHNKALAGELVNVLREARQVVPDALLK 561
              +N     +L++VLREA Q +   LL+
Sbjct:   447 PNNIKQVSDLISVLREANQAINPKLLQ 473


>UNIPROTKB|Q4R6M5 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
            of transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
            activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
            "estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
            "regulation of androgen receptor signaling pathway" evidence=ISS]
            [GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
            mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
            cell differentiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
            GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
            GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
            GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
            HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
            Uniprot:Q4R6M5
        Length = 614

 Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
 Identities = 172/387 (44%), Positives = 260/387 (67%)

Query:   177 KALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
             K + +F E+  P +V+     +NF  P+ IQ+  WP  L+G D +G+A+TGSGKT+++ +
Sbjct:    91 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 150

Query:   235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
             PA++H+  N +   + +   P+CLVL+PTRELA Q+  V  +  + C +KS C+YGG  K
Sbjct:   151 PAIVHI--NHQ-PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query:   295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
              PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRMLDMGFE  +R I+ 
Sbjct:   208 GPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 267

Query:   355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414
             +I   RQ +M+SATWP EV +LAE+++  + + + +G+ +L+ANH+++QIV+V  D  +D
Sbjct:   268 QIRPDRQTLMWSATWPKEVRQLAEDFLK-DYIHINIGALELSANHNILQIVDVCHDVEKD 326

Query:   415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
             ++L+ L+E+    + N+ +VF   +   D L   +RR GW  + IHG K+Q ER   L+ 
Sbjct:   327 EKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNE 386

Query:   475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
             FK G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT R+ K G ++TFFT
Sbjct:   387 FKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 446

Query:   535 NHNKALAGELVNVLREARQVVPDALLK 561
              +N     +L++VLREA Q +   LL+
Sbjct:   447 PNNIKQVSDLISVLREANQAINPKLLQ 473


>UNIPROTKB|E1C2R8 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
            development" evidence=IEA] [GO:0072358 "cardiovascular system
            development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
            Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
        Length = 496

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 177/391 (45%), Positives = 259/391 (66%)

Query:   177 KALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
             K + +F +   P  V+     +NF  P+PIQ   +P  L+GRD +GIA+TGSGKT+A+ +
Sbjct:    87 KPVFAFHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLL 146

Query:   235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
             PA++H+  N +   + +   P+CLVL+PTRELA Q+  V +D GK   +KS C+YGG  K
Sbjct:   147 PAIVHI--NHQ-PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPK 203

Query:   295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
              PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRMLDMGFE  +R I+ 
Sbjct:   204 GPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 263

Query:   355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414
             +I   RQ +M+SATWP EV +LAE+++  + V++ VG+ +L+ANH+++QIV+V  +  +D
Sbjct:   264 QIRPDRQTLMWSATWPKEVRQLAEDFLQ-DYVQINVGNLELSANHNILQIVDVCMESEKD 322

Query:   415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
              +L+ L+E+    + N+ ++F   +   D L   +RR GW  + IHG K+Q ER   L+ 
Sbjct:   323 HKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNE 382

Query:   475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
             F+ G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDYVHRIGRT R+  KG ++TFFT
Sbjct:   383 FRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 442

Query:   535 NHNKALAGELVNVLREARQVVPDALLKFGTH 565
               N   A EL+ VL EA Q +   L++   H
Sbjct:   443 PGNLKQARELIKVLEEANQAINPKLMQLVDH 473


>UNIPROTKB|F1NM08 [details] [associations]
            symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003712 "transcription cofactor activity" evidence=IEA]
            [GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
            ArrayExpress:F1NM08 Uniprot:F1NM08
        Length = 595

 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 173/387 (44%), Positives = 258/387 (66%)

Query:   177 KALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
             K + +F E+  P +V+   +  NF  P+ IQ+  WP  L+G D +G+A+TGSGKT+++ +
Sbjct:    79 KPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 138

Query:   235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
             PA++H+  N +   + +   P+CLVL+PTRELA Q+  V  +  + C +KS C+YGG  K
Sbjct:   139 PAIVHI--NHQ-PFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPK 195

Query:   295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
              PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRMLDMGFE  +R I+ 
Sbjct:   196 GPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 255

Query:   355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414
             +I   RQ +M+SATWP EV +LAE+++    V + +G+ +L+ANH+++QIV+V  D  +D
Sbjct:   256 QIRPDRQTLMWSATWPKEVRQLAEDFLKEY-VHINIGALELSANHNILQIVDVCHDVEKD 314

Query:   415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
              +L+ L+E+    + N+ +VF   +   D L   +RR GW  + IHG K+Q ER   L+ 
Sbjct:   315 DKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNE 374

Query:   475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
             FK G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT R+ K G ++TFFT
Sbjct:   375 FKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 434

Query:   535 NHNKALAGELVNVLREARQVVPDALLK 561
              +N     +L++VLREA Q +   LL+
Sbjct:   435 PNNIKQVNDLISVLREANQAINPKLLQ 461


>UNIPROTKB|F1NXI3 [details] [associations]
            symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
            development" evidence=IEA] [GO:0003713 "transcription coactivator
            activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
            receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
            intracellular estrogen receptor signaling pathway" evidence=IEA]
            [GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
            "regulation of androgen receptor signaling pathway" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
            mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
            GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
            GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
            GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
            ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
            ArrayExpress:F1NXI3 Uniprot:F1NXI3
        Length = 603

 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 173/387 (44%), Positives = 258/387 (66%)

Query:   177 KALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
             K + +F E+  P +V+   +  NF  P+ IQ+  WP  L+G D +G+A+TGSGKT+++ +
Sbjct:    87 KPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 146

Query:   235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
             PA++H+  N +   + +   P+CLVL+PTRELA Q+  V  +  + C +KS C+YGG  K
Sbjct:   147 PAIVHI--NHQ-PFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPK 203

Query:   295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
              PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRMLDMGFE  +R I+ 
Sbjct:   204 GPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 263

Query:   355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414
             +I   RQ +M+SATWP EV +LAE+++    V + +G+ +L+ANH+++QIV+V  D  +D
Sbjct:   264 QIRPDRQTLMWSATWPKEVRQLAEDFLKEY-VHINIGALELSANHNILQIVDVCHDVEKD 322

Query:   415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
              +L+ L+E+    + N+ +VF   +   D L   +RR GW  + IHG K+Q ER   L+ 
Sbjct:   323 DKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNE 382

Query:   475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
             FK G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT R+ K G ++TFFT
Sbjct:   383 FKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 442

Query:   535 NHNKALAGELVNVLREARQVVPDALLK 561
              +N     +L++VLREA Q +   LL+
Sbjct:   443 PNNIKQVNDLISVLREANQAINPKLLQ 469


>SGD|S000005056 [details] [associations]
            symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
            protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
            "nuclear polyadenylation-dependent mRNA catabolic process"
            evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
            ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
            "rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003724 "RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
            GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
            OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
            RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
            SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
            STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
            GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
            CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
            Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
        Length = 546

 Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
 Identities = 187/415 (45%), Positives = 264/415 (63%)

Query:   150 DETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKNPSPIQSH 207
             D  I+ F++E++  + ++G D+     K + +F E+  PD VL   K   F  P+ IQ  
Sbjct:    89 DSEIAQFRKENE--MTISGHDIP----KPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQ 142

Query:   208 AWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELA 267
              WP  L+GRD +GIA TGSGKT+++ +P ++H+ + +   A G    P+ LVL+PTRELA
Sbjct:   143 GWPMALSGRDMVGIAATGSGKTLSYCLPGIVHI-NAQPLLAPGD--GPIVLVLAPTRELA 199

Query:   268 DQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLS 327
              QI    +  G    +++ CVYGG  K  QI  L  G +IVI TPGRLID++E+   +L 
Sbjct:   200 VQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLK 259

Query:   328 EVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVK 387
              V+++VLDEADRMLDMGFE  +R I+ +I   RQ +M+SATWP EV +LA +Y++ +P++
Sbjct:   260 RVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLN-DPIQ 318

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
             V VGS +L+A+H++ QIVEV+ D  +  RL   LE   +    + L+FA  +   D +  
Sbjct:   319 VQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDITK 378

Query:   448 MLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507
              LR  GW  +AIHG K Q ER   L  F+ G  P+MVATDVAARG+D+  +  VINY  P
Sbjct:   379 YLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMP 438

Query:   508 LTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKF 562
                EDYVHRIGRTGRAG  G + +FFT  NK L  +L++++REA Q +P  LLK+
Sbjct:   439 GNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLKY 493


>UNIPROTKB|A5A6J2 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
            activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
            "estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
            "regulation of androgen receptor signaling pathway" evidence=ISS]
            [GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
            mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
            cell differentiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
            GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
            GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
            GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
            CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
            UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
            GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
            Uniprot:A5A6J2
        Length = 614

 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 171/387 (44%), Positives = 259/387 (66%)

Query:   177 KALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
             K + +F E+  P +V+     +NF  P+ IQ+  WP  L+G D +G+A+TGSGKT+++ +
Sbjct:    91 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 150

Query:   235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
             PA++H+  N +   + +   P+CLVL+PTRELA Q+  V  +  + C +KS C+YGG  K
Sbjct:   151 PAIVHI--NHQ-PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 207

Query:   295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
              PQI  L  GV+  I TPGRLID +E    +L   +++VLDEADRMLDMGFE  +R I+ 
Sbjct:   208 GPQIRDLERGVENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 267

Query:   355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414
             +I   RQ +M+SATWP EV +LAE+++  + + + +G+ +L+ANH+++QIV+V  D  +D
Sbjct:   268 QIRPDRQTLMWSATWPKEVRQLAEDFLK-DYIHINIGALELSANHNILQIVDVCHDVEKD 326

Query:   415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
             ++L+ L+E+    + N+ +VF   +   D L   +RR GW  + IHG K+Q ER   L+ 
Sbjct:   327 EKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNE 386

Query:   475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
             FK G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT R+ K G ++TFFT
Sbjct:   387 FKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT 446

Query:   535 NHNKALAGELVNVLREARQVVPDALLK 561
              +N     +L++VLREA Q +   LL+
Sbjct:   447 PNNIKQVSDLISVLREANQAINPKLLQ 473


>UNIPROTKB|A7E307 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0072358 "cardiovascular system development"
            evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
            CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
            GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
            IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
            Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
            InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
        Length = 650

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 179/405 (44%), Positives = 264/405 (65%)

Query:   163 QVVVTGKDVKEAKYKALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIG 220
             ++ V G DV     K + +F  +  P  V+     ++F  P+PIQ   +P  L+GRD +G
Sbjct:    78 EITVRGGDVCP---KPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVG 134

Query:   221 IAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280
             IA+TGSGKT+A+ +PA++H+  N +   + +   P+CLVL+PTRELA Q+  V +D GK 
Sbjct:   135 IAQTGSGKTLAYLLPAIVHI--NHQ-PYLERGDGPICLVLAPTRELAQQVQQVADDYGKC 191

Query:   281 CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRM 340
               +KS C+YGG  K PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRM
Sbjct:   192 SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRM 251

Query:   341 LDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHD 400
             LDMGFE  +R I+ +I   RQ +M+SATWP EV +LAE+++  +  ++ VG+ +L+ANH+
Sbjct:   252 LDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR-DYTQINVGNLELSANHN 310

Query:   401 VMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIH 460
             ++QIV+V  +  +D +L+ L+E+    + N+ ++F   +   D L   +RR GW  + IH
Sbjct:   311 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 370

Query:   461 GKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 520
             G K+Q ER   L+ F+ G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDYVHRIGRT
Sbjct:   371 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 430

Query:   521 GRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
              R+  KG ++TFFT  N   A EL+ VL EA Q +   L++   H
Sbjct:   431 ARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDH 475


>UNIPROTKB|E2RJ60 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
            Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
        Length = 650

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 179/405 (44%), Positives = 264/405 (65%)

Query:   163 QVVVTGKDVKEAKYKALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIG 220
             ++ V G DV     K + +F  +  P  V+     ++F  P+PIQ   +P  L+GRD +G
Sbjct:    78 EITVRGGDVCP---KPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVG 134

Query:   221 IAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280
             IA+TGSGKT+A+ +PA++H+  N +   + +   P+CLVL+PTRELA Q+  V +D GK 
Sbjct:   135 IAQTGSGKTLAYLLPAIVHI--NHQ-PYLERGDGPICLVLAPTRELAQQVQQVADDYGKC 191

Query:   281 CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRM 340
               +KS C+YGG  K PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRM
Sbjct:   192 SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRM 251

Query:   341 LDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHD 400
             LDMGFE  +R I+ +I   RQ +M+SATWP EV +LAE+++  +  ++ VG+ +L+ANH+
Sbjct:   252 LDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR-DYTQINVGNLELSANHN 310

Query:   401 VMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIH 460
             ++QIV+V  +  +D +L+ L+E+    + N+ ++F   +   D L   +RR GW  + IH
Sbjct:   311 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 370

Query:   461 GKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 520
             G K+Q ER   L+ F+ G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDYVHRIGRT
Sbjct:   371 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 430

Query:   521 GRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
              R+  KG ++TFFT  N   A EL+ VL EA Q +   L++   H
Sbjct:   431 ARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDH 475


>UNIPROTKB|F1PID8 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
            Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
        Length = 736

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 179/405 (44%), Positives = 264/405 (65%)

Query:   163 QVVVTGKDVKEAKYKALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIG 220
             ++ V G DV     K + +F  +  P  V+     ++F  P+PIQ   +P  L+GRD +G
Sbjct:   159 EITVRGGDVCP---KPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVG 215

Query:   221 IAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280
             IA+TGSGKT+A+ +PA++H+  N +   + +   P+CLVL+PTRELA Q+  V +D GK 
Sbjct:   216 IAQTGSGKTLAYLLPAIVHI--NHQ-PYLERGDGPICLVLAPTRELAQQVQQVADDYGKC 272

Query:   281 CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRM 340
               +KS C+YGG  K PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRM
Sbjct:   273 SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRM 332

Query:   341 LDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHD 400
             LDMGFE  +R I+ +I   RQ +M+SATWP EV +LAE+++  +  ++ VG+ +L+ANH+
Sbjct:   333 LDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR-DYTQINVGNLELSANHN 391

Query:   401 VMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIH 460
             ++QIV+V  +  +D +L+ L+E+    + N+ ++F   +   D L   +RR GW  + IH
Sbjct:   392 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 451

Query:   461 GKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 520
             G K+Q ER   L+ F+ G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDYVHRIGRT
Sbjct:   452 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 511

Query:   521 GRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
              R+  KG ++TFFT  N   A EL+ VL EA Q +   L++   H
Sbjct:   512 ARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDH 556


>UNIPROTKB|H3BLZ8 [details] [associations]
            symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
            "post-embryonic development" evidence=IEA] [GO:0072358
            "cardiovascular system development" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
            ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
            Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
        Length = 731

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 179/405 (44%), Positives = 264/405 (65%)

Query:   163 QVVVTGKDVKEAKYKALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIG 220
             ++ V G DV     K + +F  +  P  V+     ++F  P+PIQ   +P  L+GRD +G
Sbjct:   157 EITVRGGDVCP---KPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVG 213

Query:   221 IAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280
             IA+TGSGKT+A+ +PA++H+  N +   + +   P+CLVL+PTRELA Q+  V +D GK 
Sbjct:   214 IAQTGSGKTLAYLLPAIVHI--NHQ-PYLERGDGPICLVLAPTRELAQQVQQVADDYGKC 270

Query:   281 CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRM 340
               +KS C+YGG  K PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRM
Sbjct:   271 SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRM 330

Query:   341 LDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHD 400
             LDMGFE  +R I+ +I   RQ +M+SATWP EV +LAE+++  +  ++ VG+ +L+ANH+
Sbjct:   331 LDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR-DYTQINVGNLELSANHN 389

Query:   401 VMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIH 460
             ++QIV+V  +  +D +L+ L+E+    + N+ ++F   +   D L   +RR GW  + IH
Sbjct:   390 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 449

Query:   461 GKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 520
             G K+Q ER   L+ F+ G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDYVHRIGRT
Sbjct:   450 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 509

Query:   521 GRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
              R+  KG ++TFFT  N   A EL+ VL EA Q +   L++   H
Sbjct:   510 ARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDH 554


>UNIPROTKB|Q92841 [details] [associations]
            symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0003713 "transcription coactivator activity" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0033148 "positive
            regulation of intracellular estrogen receptor signaling pathway"
            evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
            skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
            "protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
            EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
            GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
            EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
            IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
            RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
            ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
            MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
            REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
            DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
            UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
            HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
            HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
            GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
            CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
            GO:GO:2001014 Uniprot:Q92841
        Length = 729

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 179/405 (44%), Positives = 264/405 (65%)

Query:   163 QVVVTGKDVKEAKYKALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIG 220
             ++ V G DV     K + +F  +  P  V+     ++F  P+PIQ   +P  L+GRD +G
Sbjct:   157 EITVRGGDVCP---KPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVG 213

Query:   221 IAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280
             IA+TGSGKT+A+ +PA++H+  N +   + +   P+CLVL+PTRELA Q+  V +D GK 
Sbjct:   214 IAQTGSGKTLAYLLPAIVHI--NHQ-PYLERGDGPICLVLAPTRELAQQVQQVADDYGKC 270

Query:   281 CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRM 340
               +KS C+YGG  K PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRM
Sbjct:   271 SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRM 330

Query:   341 LDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHD 400
             LDMGFE  +R I+ +I   RQ +M+SATWP EV +LAE+++  +  ++ VG+ +L+ANH+
Sbjct:   331 LDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR-DYTQINVGNLELSANHN 389

Query:   401 VMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIH 460
             ++QIV+V  +  +D +L+ L+E+    + N+ ++F   +   D L   +RR GW  + IH
Sbjct:   390 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 449

Query:   461 GKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 520
             G K+Q ER   L+ F+ G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDYVHRIGRT
Sbjct:   450 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 509

Query:   521 GRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
              R+  KG ++TFFT  N   A EL+ VL EA Q +   L++   H
Sbjct:   510 ARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDH 554


>UNIPROTKB|F1SKQ0 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0072358 "cardiovascular system development"
            evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
            EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
        Length = 736

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 179/405 (44%), Positives = 264/405 (65%)

Query:   163 QVVVTGKDVKEAKYKALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIG 220
             ++ V G DV     K + +F  +  P  V+     ++F  P+PIQ   +P  L+GRD +G
Sbjct:   159 EITVRGGDVCP---KPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVG 215

Query:   221 IAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280
             IA+TGSGKT+A+ +PA++H+  N +   + +   P+CLVL+PTRELA Q+  V +D GK 
Sbjct:   216 IAQTGSGKTLAYLLPAIVHI--NHQ-PYLERGDGPICLVLAPTRELAQQVQQVADDYGKC 272

Query:   281 CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRM 340
               +KS C+YGG  K PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRM
Sbjct:   273 SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRM 332

Query:   341 LDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHD 400
             LDMGFE  +R I+ +I   RQ +M+SATWP EV +LAE+++  +  ++ VG+ +L+ANH+
Sbjct:   333 LDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR-DYTQINVGNLELSANHN 391

Query:   401 VMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIH 460
             ++QIV+V  +  +D +L+ L+E+    + N+ ++F   +   D L   +RR GW  + IH
Sbjct:   392 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 451

Query:   461 GKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 520
             G K+Q ER   L+ F+ G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDYVHRIGRT
Sbjct:   452 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 511

Query:   521 GRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
              R+  KG ++TFFT  N   A EL+ VL EA Q +   L++   H
Sbjct:   512 ARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDH 556


>MGI|MGI:1914290 [details] [associations]
            symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003713 "transcription coactivator activity" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0009791
            "post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
            evidence=ISO] [GO:0033148 "positive regulation of intracellular
            estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0072358 "cardiovascular system
            development" evidence=IMP] [GO:2001014 "regulation of skeletal
            muscle cell differentiation" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
            GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
            GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
            ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
            EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
            RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
            UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
            IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
            REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
            GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
            InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
            CleanEx:MM_DDX17 Genevestigator:Q501J6
            GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
        Length = 650

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 179/405 (44%), Positives = 264/405 (65%)

Query:   163 QVVVTGKDVKEAKYKALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIG 220
             ++ V G DV     K + +F  +  P  V+     ++F  P+PIQ   +P  L+GRD +G
Sbjct:    78 EITVRGGDVCP---KPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVG 134

Query:   221 IAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280
             IA+TGSGKT+A+ +PA++H+  N +   + +   P+CLVL+PTRELA Q+  V +D GK 
Sbjct:   135 IAQTGSGKTLAYLLPAIVHI--NHQ-PYLERGDGPICLVLAPTRELAQQVQQVADDYGKC 191

Query:   281 CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRM 340
               +KS C+YGG  K PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRM
Sbjct:   192 SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRM 251

Query:   341 LDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHD 400
             LDMGFE  +R I+ +I   RQ +M+SATWP EV +LAE+++  +  ++ VG+ +L+ANH+
Sbjct:   252 LDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR-DYTQINVGNLELSANHN 310

Query:   401 VMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIH 460
             ++QIV+V  +  +D +L+ L+E+    + N+ ++F   +   D L   +RR GW  + IH
Sbjct:   311 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 370

Query:   461 GKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 520
             G K+Q ER   L+ F+ G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDYVHRIGRT
Sbjct:   371 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRT 430

Query:   521 GRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
              R+  KG ++TFFT  N   A EL+ VL EA Q +   L++   H
Sbjct:   431 ARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDH 475


>WB|WBGene00010260 [details] [associations]
            symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
            GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
            RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
            STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
            EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
            EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
            KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
            WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
            ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
        Length = 561

 Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
 Identities = 180/398 (45%), Positives = 258/398 (64%)

Query:   163 QVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN-FKNPSPIQSHAWPFLLNGRDFIGI 221
             QV + G+ V    ++    F E+ LP  +       F+ P+ IQS +WP  ++GRD I I
Sbjct:   117 QVTLEGRGVPRPVFE----FNEAPLPGQIHELLYGKFQKPTVIQSISWPIAMSGRDIISI 172

Query:   222 AKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPC 281
             AKTGSGKT+AF +PA++H+ + +  +  G+   P  LVL PTRELA Q+ +V  D     
Sbjct:   173 AKTGSGKTLAFMLPALVHI-TKQAHRQRGE--GPAVLVLLPTRELAQQVQEVSIDFCHSL 229

Query:   282 GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRML 341
             G+K  C++GG SK PQ   L  GVDIV+ TPGRL+D ++    ++ + S++VLDEADRML
Sbjct:   230 GLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRML 289

Query:   342 DMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDV 401
             DMGFE  ++ I+ +I   RQ +MFSATWP EV  LA ++   +   + VGS +LAANH++
Sbjct:   290 DMGFEPQIKKIIGQIRPDRQTLMFSATWPKEVRALASDFQK-DAAFLNVGSLELAANHNI 348

Query:   402 MQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHG 461
              Q+V++L++ ++  +L+ LL      +  + ++F   + +AD L   +RR GW  + IHG
Sbjct:   349 TQVVDILEEHAKQAKLMELLNHIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHG 408

Query:   462 KKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTG 521
              K Q ER   L  FK G  P+M+ATDVAARGLD+ D++ VINY +P  +EDYVHRIGRTG
Sbjct:   409 DKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTG 468

Query:   522 RAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDAL 559
             R+ KKG ++TFFT+ N + A +L+ VL EA+Q VP AL
Sbjct:   469 RSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQTVPQAL 506


>UNIPROTKB|C9JMU5 [details] [associations]
            symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
            HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
            STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
            ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
        Length = 652

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 179/407 (43%), Positives = 264/407 (64%)

Query:   163 QVVVTGKDVKEAKYKALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIG 220
             ++ V G DV     K + +F  +  P  V+     ++F  P+PIQ   +P  L+GRD +G
Sbjct:    78 EITVRGGDVCP---KPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVG 134

Query:   221 IAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280
             IA+TGSGKT+A+ +PA++H+  N +   + +   P+CLVL+PTRELA Q+  V +D GK 
Sbjct:   135 IAQTGSGKTLAYLLPAIVHI--NHQ-PYLERGDGPICLVLAPTRELAQQVQQVADDYGKC 191

Query:   281 CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRM 340
               +KS C+YGG  K PQI  L  GV+I I TPGRLID +E    +L   +++VLDEADRM
Sbjct:   192 SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRM 251

Query:   341 LDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHD 400
             LDMGFE  +R I+ +I   RQ +M+SATWP EV +LAE+++  +  ++ VG+ +L+ANH+
Sbjct:   252 LDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR-DYTQINVGNLELSANHN 310

Query:   401 VMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIH 460
             ++QIV+V  +  +D +L+ L+E+    + N+ ++F   +   D L   +RR GW  + IH
Sbjct:   311 ILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH 370

Query:   461 GKKAQHERTKSLSLFKEGTCPLMVATDVAARGL--DIPDVEVVINYSFPLTTEDYVHRIG 518
             G K+Q ER   L+ F+ G  P+++ATDVA+RGL  D+ DV+ VINY +P ++EDYVHRIG
Sbjct:   371 GDKSQPERDWVLNEFRSGKAPILIATDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRIG 430

Query:   519 RTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
             RT R+  KG ++TFFT  N   A EL+ VL EA Q +   L++   H
Sbjct:   431 RTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDH 477


>UNIPROTKB|A4QSS5 [details] [associations]
            symbol:DBP2 "ATP-dependent RNA helicase DBP2"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
            GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
            ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
            KEGG:mgr:MGG_16901 Uniprot:A4QSS5
        Length = 548

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 182/423 (43%), Positives = 267/423 (63%)

Query:   147 NGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKNPSPI 204
             N     +  F+ E    + V G DV     K +++F E+  P  V+   K   F  P+ I
Sbjct:    98 NRSQAEVDKFRREHS--MAVQGSDVP----KPVETFDEAGFPRYVMDEVKAQGFPAPTAI 151

Query:   205 QSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTR 264
             QS  WP  L+GRD +GIA+TGSGKT+ + +PA++H+ + +   A G    P+ L+L+PTR
Sbjct:   152 QSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHI-NAQPLLAPGD--GPIVLILAPTR 208

Query:   265 ELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC 324
             ELA QI   ++  GK   +++ CVYGG  K PQI  L  GV++ I TPGRLID++E    
Sbjct:   209 ELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKT 268

Query:   325 HLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPN 384
             +L  V+++VLDEADRMLDMGFE  +R I+ +I   RQ +M+SATWP EV  +A +++  +
Sbjct:   269 NLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRNMAADFLQ-D 327

Query:   385 PVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYH--KSQRNRVLVFALYQLEA 442
              ++V +GS DL+ANH + QIVEV+ +  +  R++  +EK    K  +N++L+F   +  A
Sbjct:   328 FIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEKVMDGKDSKNKILIFVGTKRVA 387

Query:   443 DRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVI 502
             D +   LR+ GW  ++IHG K Q+ER   L  FK G  P+MVATDVA+RG+D+ ++  V+
Sbjct:   388 DEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVL 447

Query:   503 NYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKF 562
             NY +P  +EDY+HRIGRTGRAG KG + TFFT  N   A +L+ VL+EA+Q +   L + 
Sbjct:   448 NYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQARDLLGVLQEAKQEIDPRLAEM 507

Query:   563 GTH 565
               +
Sbjct:   508 ARY 510


>FB|FBgn0035720 [details] [associations]
            symbol:CG10077 species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005875 "microtubule associated complex"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
            EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
            GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
            GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
            ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
            RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
            STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
            UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
        Length = 818

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 171/381 (44%), Positives = 245/381 (64%)

Query:   182 FTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMH 239
             F E   PD V+   +   F  P+ IQ+  WP  ++GRD +G+A+TGSGKT+A+ +PA++H
Sbjct:   159 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVH 218

Query:   240 VLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQIT 299
             + +N+     G    P+ LVL+PTRELA QI  V  + G    V++ C++GG  K  Q  
Sbjct:   219 I-NNQPRLERGD--GPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQAR 275

Query:   300 ALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA 359
              L  GV+IVI TPGRLID +E     L   +++VLDEADRMLDMGFE  +R I+ +I   
Sbjct:   276 DLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPD 335

Query:   360 RQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLA 419
             RQ++M+SATWP EV +LAEE+++ N ++V +GS  L+ANH+++QIV+V D+  +  +L+ 
Sbjct:   336 RQVLMWSATWPKEVRQLAEEFLN-NYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIK 394

Query:   420 LLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT 479
             LL         + ++F   +   D +   + R GW+  AIHG K+Q ER   LS F+ G 
Sbjct:   395 LLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGR 454

Query:   480 CPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539
               ++VATDVAARGLD+ DV+ VINY +P  +EDYVHRIGRTGR+   G ++T FT+ N  
Sbjct:   455 HSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNAN 514

Query:   540 LAGELVNVLREARQVVPDALL 560
              A +L+ VLREA Q +   L+
Sbjct:   515 KANDLIQVLREANQTINPKLM 535


>FB|FBgn0029979 [details] [associations]
            symbol:CG10777 species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
            GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
            GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
            RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
            MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
            KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
            InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
            NextBio:774939 Uniprot:Q9W3M7
        Length = 945

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 176/407 (43%), Positives = 264/407 (64%)

Query:   163 QVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIG 220
             ++ V+G ++       + SF ES LP  V+   K   F  P+ IQS  WP  L+GRD +G
Sbjct:   224 EITVSGNELPHP----VVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVG 279

Query:   221 IAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280
             IA+TGSGKT+A+ +PA++H+  N+     G+   P+ LVL+PTRELA QI  V+ D G  
Sbjct:   280 IAQTGSGKTLAYMLPAIVHI-GNQPPIIRGE--GPIALVLAPTRELAQQIQSVVRDYGHL 336

Query:   281 CG--VKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEAD 338
             C   ++  C++GG+SK PQ   L  GV+++I TPGRLID +E    +L   +++VLDEAD
Sbjct:   337 CKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEAD 396

Query:   339 RMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAAN 398
             RMLDMGFE  +R I+ +I   RQ+VM+SATWP EV  LA ++++ + +++ +GS +L+AN
Sbjct:   397 RMLDMGFEPQIRKIIEQIRPDRQVVMWSATWPKEVQALAGDFLN-DYIQINIGSMNLSAN 455

Query:   399 HDVMQIVEVLDDRSRDQRLLALLE-----KYHKSQRNRVLVFALYQLEADRLENMLRRSG 453
             H++ QIVE+  +  + QRL+ LL      K   +  N+++VF   +++ + +  ++R  G
Sbjct:   456 HNIRQIVEICTEIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEG 515

Query:   454 WKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDY 513
             +   +IHG K Q+ER   L  F+ G   +++ATDVA+RGLD+ D++ VINY +P ++E+Y
Sbjct:   516 YNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENY 575

Query:   514 VHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALL 560
             VHRIGRTGR  + G ++TFFT  N   A EL++VL EA Q    ALL
Sbjct:   576 VHRIGRTGRCQQLGTAYTFFTPDNAKQARELISVLEEAGQTPSQALL 622


>FB|FBgn0037549 [details] [associations]
            symbol:CG7878 species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
            SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
            GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
            UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
            GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
            FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
            GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
        Length = 703

 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 188/432 (43%), Positives = 267/432 (61%)

Query:   146 ENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK-NFKNPSPI 204
             E  +  T+S+  E  +G+   T   +    +   + F E   PD +    K  F  PSPI
Sbjct:   255 EENNKITVSYVFEPKEGE---TSPPIPNPVWTFEQCFAE--YPDMLEEITKMGFSKPSPI 309

Query:   205 QSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHV--LSNRKGKAVGKRVNPLCLVLSP 262
             QS AWP LL G D IGIA+TG+GKT+AF +P M+H    S  +G   G  V    LVL+P
Sbjct:   310 QSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGTRGGANV----LVLAP 365

Query:   263 TRELADQI-YDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEM 321
             TRELA QI  +V   + +  G+K+VCVYGG ++  QI+ L  G +I+I TPGRL DLI  
Sbjct:   366 TRELALQIEMEVKKYSFR--GMKAVCVYGGGNRNMQISDLERGAEIIICTPGRLNDLIMA 423

Query:   322 NVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYM 381
             NV  +S ++++VLDEADRMLDMGFE  +R ++  I   RQ +M SATWP  V +LA+ YM
Sbjct:   424 NVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSATWPPGVRRLAQSYM 483

Query:   382 DPNPVKVVVGSEDLAANHDVMQIVEVL-DDRSRDQRLLALLEKYHKSQRNRVLVFALYQL 440
               NP++V VGS DLAA H V QI++++ DD  +   + + ++  + S  +++++F   ++
Sbjct:   484 K-NPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVK--NMSSTDKIIIFCGRKV 540

Query:   441 EADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEV 500
              AD L + L   G+    IHG + Q +R ++++  K G   ++VATDVA+RGLDI D+  
Sbjct:   541 RADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITH 600

Query:   501 VINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALL 560
             VINY FP   E+YVHR+GRTGRAG++G S +FFT  + A+A EL+ +L+EA Q VPD L 
Sbjct:   601 VINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQEAEQEVPDELH 660

Query:   561 KFGTHVKKKESK 572
                   K  + K
Sbjct:   661 NMARRFKAMKDK 672


>FB|FBgn0003261 [details] [associations]
            symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
            evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
            [GO:0005875 "microtubule associated complex" evidence=IDA]
            [GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
            chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
            GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
            GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
            EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
            RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
            RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
            RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
            ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
            MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
            EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
            CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
            OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
            Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
        Length = 719

 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 171/385 (44%), Positives = 253/385 (65%)

Query:   179 LKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             ++ F+E  LPD V+   +   +K P+ IQ+  WP  ++G +F+GIAKTGSGKT+ + +PA
Sbjct:   280 IQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPA 339

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQP 296
             ++H+ +N++    G    P+ LVL+PTRELA QI  V  + G    V++ CV+GG  K  
Sbjct:   340 IVHI-NNQQPLQRGD--GPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGG 396

Query:   297 QITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356
             Q+  L+ G +IVI TPGRLID +     +L   +++VLDEADRMLDMGFE  +R I+S+I
Sbjct:   397 QMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQI 456

Query:   357 SLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQR 416
                RQ +M+SATWP EV +LAE+++  N +++ +GS +L+ANH++ Q+V+V D+ S++++
Sbjct:   457 RPDRQTLMWSATWPKEVKQLAEDFLG-NYIQINIGSLELSANHNIRQVVDVCDEFSKEEK 515

Query:   417 LLALLEK-YHKSQR-NRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
             L  LL   Y  S+   ++++F   +   D L   +R  G +  AIHG K+Q ER   L  
Sbjct:   516 LKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLRE 575

Query:   475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
             F+ G   ++VATDVAARGLD+  ++ VIN+ +P  +EDY+HRIGRTGR+  KG S  FFT
Sbjct:   576 FRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFT 635

Query:   535 NHNKALAGELVNVLREARQVVPDAL 559
              +N   A  LV+VLREA Q +  AL
Sbjct:   636 KNNAKQAKALVDVLREANQEINPAL 660


>TAIR|locus:2222617 [details] [associations]
            symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
            "plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
            wall modification" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
            PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
            Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
            ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
            EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
            OMA:YLIPGFM Uniprot:F4K6V1
        Length = 712

 Score = 794 (284.6 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
 Identities = 164/368 (44%), Positives = 228/368 (61%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             F  PSPIQ+ +WP  +  RD + IAKTGSGKT+ + +P  MH+        +G    P  
Sbjct:   249 FSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG----PTI 304

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             LVLSPTRELA QI       GK   +   C+YGG  K PQ+  +  GVDIV+ TPGRL D
Sbjct:   305 LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLND 364

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
             ++EM    L +VS++VLDEADRMLDMGFE  +R I++++   RQ +M++ATWP EV K+A
Sbjct:   365 ILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIA 424

Query:   378 EEYMDPNPVKVVVGSED-LAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFA 436
              + +  NP +V +G+ D L AN  + Q +EVL    +  RL  +L        +++++F 
Sbjct:   425 ADLL-VNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPG--SKIIIFC 481

Query:   437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496
               +   D+L   L R+ +   AIHG K+Q ER   L+ F+ G  P++VATDVAARGLD+ 
Sbjct:   482 STKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVK 540

Query:   497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVP 556
             D+ VV+NY FP   EDYVHRIGRTGRAG  G+++TFF + +   A +L+ +L  A Q VP
Sbjct:   541 DIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVP 600

Query:   557 DALLKFGT 564
               + +  T
Sbjct:   601 PQVREMAT 608

 Score = 43 (20.2 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query:   179 LKSFTESKLPDDVLGCCKNF 198
             L SF  + LP+++L  C NF
Sbjct:   160 LMSFEATGLPNELLRECPNF 179


>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
            symbol:PF14_0437 "helicase, truncated,
            putative" species:5833 "Plasmodium falciparum" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
            MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
            GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
            HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
        Length = 527

 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 189/423 (44%), Positives = 255/423 (60%)

Query:   154 SFFKEEDDGQVVVTGKDVKEA--KYKA-----------LKSFTESKLPDDVLGCCKN--F 198
             +F+KE +D   + T K+VKE   K+K            + S  +   PD V+   KN   
Sbjct:    75 NFYKEHEDISKLST-KEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNI 133

Query:   199 KNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCL 258
               P+PIQ   WP  L+G+D IG A+TGSGKT+AF +PA +H+L+    K  G    P+ L
Sbjct:   134 VAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLK-YGD--GPIVL 190

Query:   259 VLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDL 318
             VL+PTRELA+QI            +++ C YGG  K  QI AL+ GV I+I  PGRLIDL
Sbjct:   191 VLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLIDL 250

Query:   319 IEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAE 378
             +E NV +L  V+++VLDEAD+MLDMGFE  +R I+ +I   RQ +M+SATWP EV  LA+
Sbjct:   251 LEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWSATWPKEVQALAK 310

Query:   379 EYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALY 438
             +     P++V VGS  L A   + Q + +L++  +   L +LL++  K   +R++VF   
Sbjct:   311 DLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDN-DRIIVFVET 369

Query:   439 QLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDV 498
             +  AD +   LR  G   + IHG K Q ER   L+ FK G  P+M+ATDVA+RGLDI +V
Sbjct:   370 KKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNV 429

Query:   499 EVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDA 558
             + VIN+ FP   EDYVHRIGRTGRAG  G S TF T     LA +LV +LRE+ Q VP  
Sbjct:   430 KYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKILRESEQPVPPQ 489

Query:   559 LLK 561
             L K
Sbjct:   490 LEK 492


>UNIPROTKB|Q8IL13 [details] [associations]
            symbol:PF14_0437 "Helicase, putative" species:36329
            "Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
            ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
            PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
            KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
            HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
        Length = 527

 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 189/423 (44%), Positives = 255/423 (60%)

Query:   154 SFFKEEDDGQVVVTGKDVKEA--KYKA-----------LKSFTESKLPDDVLGCCKN--F 198
             +F+KE +D   + T K+VKE   K+K            + S  +   PD V+   KN   
Sbjct:    75 NFYKEHEDISKLST-KEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNI 133

Query:   199 KNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCL 258
               P+PIQ   WP  L+G+D IG A+TGSGKT+AF +PA +H+L+    K  G    P+ L
Sbjct:   134 VAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLK-YGD--GPIVL 190

Query:   259 VLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDL 318
             VL+PTRELA+QI            +++ C YGG  K  QI AL+ GV I+I  PGRLIDL
Sbjct:   191 VLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLIDL 250

Query:   319 IEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAE 378
             +E NV +L  V+++VLDEAD+MLDMGFE  +R I+ +I   RQ +M+SATWP EV  LA+
Sbjct:   251 LEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWSATWPKEVQALAK 310

Query:   379 EYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALY 438
             +     P++V VGS  L A   + Q + +L++  +   L +LL++  K   +R++VF   
Sbjct:   311 DLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDN-DRIIVFVET 369

Query:   439 QLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDV 498
             +  AD +   LR  G   + IHG K Q ER   L+ FK G  P+M+ATDVA+RGLDI +V
Sbjct:   370 KKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNV 429

Query:   499 EVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDA 558
             + VIN+ FP   EDYVHRIGRTGRAG  G S TF T     LA +LV +LRE+ Q VP  
Sbjct:   430 KYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKILRESEQPVPPQ 489

Query:   559 LLK 561
             L K
Sbjct:   490 LEK 492


>TAIR|locus:2081061 [details] [associations]
            symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
            "vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
            evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
            PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
            SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
            UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
            PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
            KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
            HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
            ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
            Uniprot:Q9SQV1
        Length = 1088

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 176/397 (44%), Positives = 243/397 (61%)

Query:   163 QVVVTGKDVKEAKYKALKSFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLLNGRDFIG 220
             +V  TG+++  A Y    +F  S LP ++L       F +P+PIQ+  WP  L  RD + 
Sbjct:   422 EVTTTGENIP-APYI---TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVA 477

Query:   221 IAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280
             IAKTGSGKT+ + +PA + +L + +  +   R  P  L+L+PTRELA QI D     G+ 
Sbjct:   478 IAKTGSGKTLGYLIPAFI-LLRHCRNDS---RNGPTVLILAPTRELATQIQDEALRFGRS 533

Query:   281 CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRM 340
               +   C+YGG  K PQ+  L  G DIV+ TPGRL D++EM +    +VS +VLDEADRM
Sbjct:   534 SRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRM 593

Query:   341 LDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSED-LAANH 399
             LDMGFE  +R I+++I   RQ +M++ATWP EV K+A + +  NPV+V +G  D LAAN 
Sbjct:   594 LDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLL-VNPVQVNIGRVDELAANK 652

Query:   400 DVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAI 459
              + Q VEV+    +++RL  +L    +   ++V++F   +   D L   + R  +  V I
Sbjct:   653 AITQYVEVVPQMEKERRLEQILRSQERG--SKVIIFCSTKRLCDHLARSVGRH-FGAVVI 709

Query:   460 HGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGR 519
             HG K Q ER   L+ F+ G   +++ATDVAARGLDI D+ VVINY FP   EDYVHRIGR
Sbjct:   710 HGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGR 769

Query:   520 TGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVP 556
             TGRAG  GV+ TFFT  +   A +L+ VL  A Q VP
Sbjct:   770 TGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVP 806


>UNIPROTKB|E1BSC0 [details] [associations]
            symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
            IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
        Length = 1031

 Score = 762 (273.3 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
 Identities = 176/445 (39%), Positives = 261/445 (58%)

Query:   151 ETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHA 208
             E ++ ++ E +G + V GK       K +K++ +  +   +L   K   ++ P+PIQS A
Sbjct:   347 EEVNVYRLEMEG-ITVKGKGCP----KPIKTWVQCGISMKILTALKKHGYEKPTPIQSQA 401

Query:   209 WPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELAD 268
              P ++NGRD IGIAKTGSGKTIAF +P   H++  R   A+ +   P+ ++++PTRELA 
Sbjct:   402 IPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR---ALEEGEGPIAVIMTPTRELAL 458

Query:   269 QIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN---VCH 325
             QI        K  G++ VCVYGGT    QI  L+ G +I++ TPGR+ID++  N   V +
Sbjct:   459 QITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTN 518

Query:   326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNP 385
             L  V++VVLDEADRM DMGFE  V  I+  +   RQ VMFSAT+P  +  LA   +   P
Sbjct:   519 LRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS-KP 577

Query:   386 VKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRL 445
             ++V VG   +  + DV Q V V+++ ++  +LL LL  Y   ++  V++F   Q  AD L
Sbjct:   578 IEVQVGGRSVVCS-DVEQHVIVIEEENKFLKLLELLGHYQ--EKGSVIIFVDKQEHADGL 634

Query:   446 ENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYS 505
                L R+ +  +++HG   Q++R   ++ FK GTC L+VAT VAARGLD+  + +V+NYS
Sbjct:   635 LKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYS 694

Query:   506 FPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
              P   EDYVHR GRTGRAG KG ++TF T      AG+++  L  +   +P  L K    
Sbjct:   695 CPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDIIKALELSGNPIPADLEKLWAD 754

Query:   566 VKKKESKLYGAHFREISADAPKAKK 590
              K+++ K  G   ++ S  + K  K
Sbjct:   755 FKEQQ-KAEGKLIKKSSGFSGKGFK 778

 Score = 48 (22.0 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query:   145 SENGDDETISFFKEEDDGQVVVTGK-----DVKEAKYKALKSFTESKLPDDV 191
             S+N   E  S  KE  +G  V   K     D +E K K  K+F ++KL +++
Sbjct:   108 SKNRKTENRSRSKERTEGVEVSKEKKKEKDDKEEEKDKDAKNFDQNKLEEEM 159

 Score = 44 (20.5 bits), Expect = 2.8e-78, Sum P(2) = 2.8e-78
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query:   142 GKESENGDDETISFFKEED--DGQVVVTGKDVKEAK 175
             G+  EN D + + +  EE+  D Q  +TG   K+ K
Sbjct:   281 GELMEN-DQDAMEYSSEEEEVDLQTALTGYQTKQRK 315


>TAIR|locus:2084178 [details] [associations]
            symbol:DRH1 "DEAD box RNA helicase 1" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
            PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
            SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
            EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
            EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
            PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
            RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
            ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
            PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
            EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
            KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
            OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
            Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
        Length = 619

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 167/390 (42%), Positives = 235/390 (60%)

Query:   179 LKSFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             L SF  +  P ++L       F  P+PIQ+ +WP  + GRD + IAKTGSGKT+ + +P 
Sbjct:   157 LMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPG 216

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQP 296
              +H+   R    +G    P  LVLSPTRELA QI +     G+   +   C+YGG  K P
Sbjct:   217 FLHLQRIRNDSRMG----PTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGP 272

Query:   297 QITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356
             Q+  L  G DIV+ TPGRL D++EM    L ++S++VLDEADRMLDMGFE  +R I+ +I
Sbjct:   273 QLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEI 332

Query:   357 SLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSED-LAANHDVMQIVEVLDDRSRDQ 415
                RQ +M++ATWP  V K+A + +  NP +V +G+ D L AN  + Q +EV+    + +
Sbjct:   333 PTKRQTLMYTATWPKGVRKIAADLL-VNPAQVNIGNVDELVANKSITQHIEVVAPMEKQR 391

Query:   416 RLLALLEKYHKSQRNRVLVFALYQLEADRL-ENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
             RL  +L        ++V++F   +   D+L  N+ R+ G    AIHG K+Q ER   L+ 
Sbjct:   392 RLEQILRSQEPG--SKVIIFCSTKRMCDQLTRNLTRQFG--AAAIHGDKSQPERDNVLNQ 447

Query:   475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
             F+ G  P++VATDVAARGLD+ D+  V+NY FP   EDYVHRIGRTGRAG  G + TFF 
Sbjct:   448 FRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFG 507

Query:   535 NHNKALAGELVNVLREARQVVPDALLKFGT 564
             + +   A +L+ +L  A Q VP  + +  T
Sbjct:   508 DQDSKHASDLIKILEGANQRVPPQIREMAT 537


>UNIPROTKB|F1MX40 [details] [associations]
            symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
            EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
            Uniprot:F1MX40
        Length = 1032

 Score = 758 (271.9 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 177/445 (39%), Positives = 260/445 (58%)

Query:   151 ETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHA 208
             E ++ F+ E +G + V GK       K +KS+ +  +   +L   K   ++ P+PIQ+ A
Sbjct:   348 EEVNVFRLEMEG-ITVKGKGCP----KPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQA 402

Query:   209 WPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELAD 268
              P +++GRD IGIAKTGSGKTIAF +P   H++  R   ++ +   P+ ++++PTRELA 
Sbjct:   403 IPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR---SLEEGEGPIAVIMTPTRELAL 459

Query:   269 QIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN---VCH 325
             QI        K  G++ VCVYGGT    QI  L+ G +I++ TPGR+ID++  N   V +
Sbjct:   460 QITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTN 519

Query:   326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNP 385
             L  V++VVLDEADRM DMGFE  V  I+  +   RQ VMFSAT+P  +  LA   +   P
Sbjct:   520 LRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS-KP 578

Query:   386 VKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRL 445
             ++V VG   +  + DV Q V V+++  +  +LL LL  Y +S    V++F   Q  AD L
Sbjct:   579 IEVQVGGRSVVCS-DVEQQVIVIEEEKKFLKLLELLGHYQES--GSVIIFVDKQEHADGL 635

Query:   446 ENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYS 505
                L R+ +  +++HG   Q++R   ++ FK GTC L+VAT VAARGLD+  + +V+NYS
Sbjct:   636 LKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYS 695

Query:   506 FPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
              P   EDYVHR GRTGRAG KG ++TF T      AG+++  L  +   VP  L K  + 
Sbjct:   696 CPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSD 755

Query:   566 VKKKESKLYGAHFREISADAPKAKK 590
              K ++ K  G   ++ S  + K  K
Sbjct:   756 FKDQQ-KAEGKIIKKSSGFSGKGFK 779

 Score = 44 (20.5 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query:   142 GKESENGDDETISFFKEED--DGQVVVTGKDVKEAK 175
             G+  EN D + + +  EE+  D Q  +TG   K+ K
Sbjct:   282 GELMEN-DQDAMEYSSEEEEVDLQTALTGYQTKQRK 316


>UNIPROTKB|F1PK90 [details] [associations]
            symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
            Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
        Length = 1032

 Score = 758 (271.9 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 177/445 (39%), Positives = 260/445 (58%)

Query:   151 ETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHA 208
             E ++ F+ E +G + V GK       K +KS+ +  +   +L   K   ++ P+PIQ+ A
Sbjct:   348 EEVNVFRLEMEG-ITVKGKGCP----KPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQA 402

Query:   209 WPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELAD 268
              P +++GRD IGIAKTGSGKTIAF +P   H++  R   ++ +   P+ ++++PTRELA 
Sbjct:   403 IPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR---SLEEGEGPIAVIMTPTRELAL 459

Query:   269 QIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN---VCH 325
             QI        K  G++ VCVYGGT    QI  L+ G +I++ TPGR+ID++  N   V +
Sbjct:   460 QITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTN 519

Query:   326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNP 385
             L  V++VVLDEADRM DMGFE  V  I+  +   RQ VMFSAT+P  +  LA   +   P
Sbjct:   520 LRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS-KP 578

Query:   386 VKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRL 445
             ++V VG   +  + DV Q V V+++  +  +LL LL  Y +S    V++F   Q  AD L
Sbjct:   579 IEVQVGGRSVVCS-DVEQQVIVIEEEKKFLKLLELLGHYQES--GSVIIFVDKQEHADGL 635

Query:   446 ENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYS 505
                L R+ +  +++HG   Q++R   ++ FK GTC L+VAT VAARGLD+  + +V+NYS
Sbjct:   636 LKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYS 695

Query:   506 FPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
              P   EDYVHR GRTGRAG KG ++TF T      AG+++  L  +   VP  L K  + 
Sbjct:   696 CPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSD 755

Query:   566 VKKKESKLYGAHFREISADAPKAKK 590
              K ++ K  G   ++ S  + K  K
Sbjct:   756 FKDQQ-KAEGKIIKKSSGFSGKGFK 779

 Score = 44 (20.5 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query:   142 GKESENGDDETISFFKEED--DGQVVVTGKDVKEAK 175
             G+  EN D + + +  EE+  D Q  +TG   K+ K
Sbjct:   282 GELMEN-DQDAMEYSSEEEEVDLQTALTGYQTKQRK 316


>UNIPROTKB|Q7L014 [details] [associations]
            symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
            GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
            IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
            ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
            MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
            PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
            Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
            KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
            HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
            PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
            InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
            NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
            CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
            Uniprot:Q7L014
        Length = 1031

 Score = 758 (271.9 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 177/445 (39%), Positives = 260/445 (58%)

Query:   151 ETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHA 208
             E ++ F+ E +G + V GK       K +KS+ +  +   +L   K   ++ P+PIQ+ A
Sbjct:   348 EEVNVFRLEMEG-ITVKGKGCP----KPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQA 402

Query:   209 WPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELAD 268
              P +++GRD IGIAKTGSGKTIAF +P   H++  R   ++ +   P+ ++++PTRELA 
Sbjct:   403 IPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR---SLEEGEGPIAVIMTPTRELAL 459

Query:   269 QIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN---VCH 325
             QI        K  G++ VCVYGGT    QI  L+ G +I++ TPGR+ID++  N   V +
Sbjct:   460 QITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTN 519

Query:   326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNP 385
             L  V++VVLDEADRM DMGFE  V  I+  +   RQ VMFSAT+P  +  LA   +   P
Sbjct:   520 LRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS-KP 578

Query:   386 VKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRL 445
             ++V VG   +  + DV Q V V+++  +  +LL LL  Y +S    V++F   Q  AD L
Sbjct:   579 IEVQVGGRSVVCS-DVEQQVIVIEEEKKFLKLLELLGHYQES--GSVIIFVDKQEHADGL 635

Query:   446 ENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYS 505
                L R+ +  +++HG   Q++R   ++ FK GTC L+VAT VAARGLD+  + +V+NYS
Sbjct:   636 LKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYS 695

Query:   506 FPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
              P   EDYVHR GRTGRAG KG ++TF T      AG+++  L  +   VP  L K  + 
Sbjct:   696 CPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSD 755

Query:   566 VKKKESKLYGAHFREISADAPKAKK 590
              K ++ K  G   ++ S  + K  K
Sbjct:   756 FKDQQ-KAEGKIIKKSSGFSGKGFK 779

 Score = 44 (20.5 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query:   142 GKESENGDDETISFFKEED--DGQVVVTGKDVKEAK 175
             G+  EN D + + +  EE+  D Q  +TG   K+ K
Sbjct:   282 GELMEN-DQDAMEYSSEEEEVDLQTALTGYQTKQRK 316


>UNIPROTKB|I3LR20 [details] [associations]
            symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
            Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
        Length = 1032

 Score = 758 (271.9 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 177/445 (39%), Positives = 260/445 (58%)

Query:   151 ETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHA 208
             E ++ F+ E +G + V GK       K +KS+ +  +   +L   K   ++ P+PIQ+ A
Sbjct:   348 EEVNVFRLEMEG-ITVKGKGCP----KPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQA 402

Query:   209 WPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELAD 268
              P +++GRD IGIAKTGSGKTIAF +P   H++  R   ++ +   P+ ++++PTRELA 
Sbjct:   403 IPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR---SLEEGEGPIAVIMTPTRELAL 459

Query:   269 QIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN---VCH 325
             QI        K  G++ VCVYGGT    QI  L+ G +I++ TPGR+ID++  N   V +
Sbjct:   460 QITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTN 519

Query:   326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNP 385
             L  V++VVLDEADRM DMGFE  V  I+  +   RQ VMFSAT+P  +  LA   +   P
Sbjct:   520 LRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS-KP 578

Query:   386 VKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRL 445
             ++V VG   +  + DV Q V V+++  +  +LL LL  Y +S    V++F   Q  AD L
Sbjct:   579 IEVQVGGRSVVCS-DVEQQVIVIEEEKKFLKLLELLGHYQES--GSVIIFVDKQEHADGL 635

Query:   446 ENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYS 505
                L R+ +  +++HG   Q++R   ++ FK GTC L+VAT VAARGLD+  + +V+NYS
Sbjct:   636 LKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYS 695

Query:   506 FPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
              P   EDYVHR GRTGRAG KG ++TF T      AG+++  L  +   VP  L K  + 
Sbjct:   696 CPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSD 755

Query:   566 VKKKESKLYGAHFREISADAPKAKK 590
              K ++ K  G   ++ S  + K  K
Sbjct:   756 FKDQQ-KAEGKIIKKSSGFSGKGFK 779

 Score = 44 (20.5 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query:   142 GKESENGDDETISFFKEED--DGQVVVTGKDVKEAK 175
             G+  EN D + + +  EE+  D Q  +TG   K+ K
Sbjct:   282 GELMEN-DQDAMEYSSEEEEVDLQTALTGYQTKQRK 316


>MGI|MGI:1920895 [details] [associations]
            symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
            GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
            GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
            OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
            EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
            UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
            STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
            Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
            UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
            Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
            GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
        Length = 1032

 Score = 758 (271.9 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 177/445 (39%), Positives = 260/445 (58%)

Query:   151 ETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHA 208
             E ++ F+ E +G + V GK       K +KS+ +  +   +L   K   ++ P+PIQ+ A
Sbjct:   348 EEVNVFRLEMEG-ITVKGKGCP----KPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQA 402

Query:   209 WPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELAD 268
              P +++GRD IGIAKTGSGKTIAF +P   H++  R   ++ +   P+ ++++PTRELA 
Sbjct:   403 IPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR---SLEEGEGPIAVIMTPTRELAL 459

Query:   269 QIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN---VCH 325
             QI        K  G++ VCVYGGT    QI  L+ G +I++ TPGR+ID++  N   V +
Sbjct:   460 QITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTN 519

Query:   326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNP 385
             L  V++VVLDEADRM DMGFE  V  I+  +   RQ VMFSAT+P  +  LA   +   P
Sbjct:   520 LRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS-KP 578

Query:   386 VKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRL 445
             ++V VG   +  + DV Q V V+++  +  +LL LL  Y +S    V++F   Q  AD L
Sbjct:   579 IEVQVGGRSVVCS-DVEQQVIVIEEEKKFLKLLELLGHYQES--GSVIIFVDKQEHADGL 635

Query:   446 ENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYS 505
                L R+ +  +++HG   Q++R   ++ FK GTC L+VAT VAARGLD+  + +V+NYS
Sbjct:   636 LKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYS 695

Query:   506 FPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
              P   EDYVHR GRTGRAG KG ++TF T      AG+++  L  +   VP  L K  + 
Sbjct:   696 CPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSD 755

Query:   566 VKKKESKLYGAHFREISADAPKAKK 590
              K ++ K  G   ++ S  + K  K
Sbjct:   756 FKDQQ-KAEGKIIKKSSGFSGKGFK 779

 Score = 44 (20.5 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query:   142 GKESENGDDETISFFKEED--DGQVVVTGKDVKEAK 175
             G+  EN D + + +  EE+  D Q  +TG   K+ K
Sbjct:   282 GELMEN-DQDAMEYSSEEEEVDLQTALTGYQTKQRK 316


>RGD|708480 [details] [associations]
            symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
            GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
            HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
            EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
            RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
            STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
            Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
            UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
            ArrayExpress:Q62780 Genevestigator:Q62780
            GermOnline:ENSRNOG00000021637 Uniprot:Q62780
        Length = 1032

 Score = 758 (271.9 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 177/445 (39%), Positives = 260/445 (58%)

Query:   151 ETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHA 208
             E ++ F+ E +G + V GK       K +KS+ +  +   +L   K   ++ P+PIQ+ A
Sbjct:   348 EEVNVFRLEMEG-ITVKGKGCP----KPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQA 402

Query:   209 WPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELAD 268
              P +++GRD IGIAKTGSGKTIAF +P   H++  R   ++ +   P+ ++++PTRELA 
Sbjct:   403 IPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR---SLEEGEGPIAVIMTPTRELAL 459

Query:   269 QIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN---VCH 325
             QI        K  G++ VCVYGGT    QI  L+ G +I++ TPGR+ID++  N   V +
Sbjct:   460 QITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTN 519

Query:   326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNP 385
             L  V++VVLDEADRM DMGFE  V  I+  +   RQ VMFSAT+P  +  LA   +   P
Sbjct:   520 LRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS-KP 578

Query:   386 VKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRL 445
             ++V VG   +  + DV Q V V+++  +  +LL LL  Y +S    V++F   Q  AD L
Sbjct:   579 IEVQVGGRSVVCS-DVEQQVIVIEEEKKFLKLLELLGHYQES--GSVIIFVDKQEHADGL 635

Query:   446 ENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYS 505
                L R+ +  +++HG   Q++R   ++ FK GTC L+VAT VAARGLD+  + +V+NYS
Sbjct:   636 LKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYS 695

Query:   506 FPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
              P   EDYVHR GRTGRAG KG ++TF T      AG+++  L  +   VP  L K  + 
Sbjct:   696 CPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSD 755

Query:   566 VKKKESKLYGAHFREISADAPKAKK 590
              K ++ K  G   ++ S  + K  K
Sbjct:   756 FKDQQ-KAEGKIIKKSSGFSGKGFK 779

 Score = 44 (20.5 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query:   142 GKESENGDDETISFFKEED--DGQVVVTGKDVKEAK 175
             G+  EN D + + +  EE+  D Q  +TG   K+ K
Sbjct:   282 GELMEN-DQDAMEYSSEEEEVDLQTALTGYQTKQRK 316


>UNIPROTKB|Q62780 [details] [associations]
            symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
            species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
            GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
            OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
            PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
            ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
            PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
            KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
            ArrayExpress:Q62780 Genevestigator:Q62780
            GermOnline:ENSRNOG00000021637 Uniprot:Q62780
        Length = 1032

 Score = 758 (271.9 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 177/445 (39%), Positives = 260/445 (58%)

Query:   151 ETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHA 208
             E ++ F+ E +G + V GK       K +KS+ +  +   +L   K   ++ P+PIQ+ A
Sbjct:   348 EEVNVFRLEMEG-ITVKGKGCP----KPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQA 402

Query:   209 WPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELAD 268
              P +++GRD IGIAKTGSGKTIAF +P   H++  R   ++ +   P+ ++++PTRELA 
Sbjct:   403 IPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR---SLEEGEGPIAVIMTPTRELAL 459

Query:   269 QIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN---VCH 325
             QI        K  G++ VCVYGGT    QI  L+ G +I++ TPGR+ID++  N   V +
Sbjct:   460 QITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTN 519

Query:   326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNP 385
             L  V++VVLDEADRM DMGFE  V  I+  +   RQ VMFSAT+P  +  LA   +   P
Sbjct:   520 LRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS-KP 578

Query:   386 VKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRL 445
             ++V VG   +  + DV Q V V+++  +  +LL LL  Y +S    V++F   Q  AD L
Sbjct:   579 IEVQVGGRSVVCS-DVEQQVIVIEEEKKFLKLLELLGHYQES--GSVIIFVDKQEHADGL 635

Query:   446 ENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYS 505
                L R+ +  +++HG   Q++R   ++ FK GTC L+VAT VAARGLD+  + +V+NYS
Sbjct:   636 LKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYS 695

Query:   506 FPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
              P   EDYVHR GRTGRAG KG ++TF T      AG+++  L  +   VP  L K  + 
Sbjct:   696 CPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSD 755

Query:   566 VKKKESKLYGAHFREISADAPKAKK 590
              K ++ K  G   ++ S  + K  K
Sbjct:   756 FKDQQ-KAEGKIIKKSSGFSGKGFK 779

 Score = 44 (20.5 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query:   142 GKESENGDDETISFFKEED--DGQVVVTGKDVKEAK 175
             G+  EN D + + +  EE+  D Q  +TG   K+ K
Sbjct:   282 GELMEN-DQDAMEYSSEEEEVDLQTALTGYQTKQRK 316


>ZFIN|ZDB-GENE-030131-667 [details] [associations]
            symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
            pancreas development" evidence=IMP] [GO:0007420 "brain development"
            evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
            evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
            GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
            GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
            EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
            ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
        Length = 1035

 Score = 749 (268.7 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
 Identities = 176/445 (39%), Positives = 260/445 (58%)

Query:   151 ETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHA 208
             E +S ++ E +G + V GK       K +K++ +  +   VL   K  N++ P+PIQ+ A
Sbjct:   333 EEVSEYRLELEG-ISVKGKGCP----KPIKTWVQCGISMKVLNALKKHNYEKPTPIQAQA 387

Query:   209 WPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELAD 268
              P +++GRD IGIAKTGSGKTIAF +P   H+L  R    VG+   PL ++++PTRELA 
Sbjct:   388 IPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRP---VGEAEGPLAVIMTPTRELAL 444

Query:   269 QIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN---VCH 325
             QI        K   ++ VCVYGGT    QI  L+ G +I++ TPGR+ID++  N   V +
Sbjct:   445 QITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGRVTN 504

Query:   326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNP 385
             L  V++VV+DEADRM DMGFE  V  I+  +   RQ VMFSAT+P  +  LA   +   P
Sbjct:   505 LRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRTMEALARRILS-KP 563

Query:   386 VKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRL 445
             V+V VG   +  + DV Q V V+++  +  +LL +L  Y   ++  V++F   Q  AD L
Sbjct:   564 VEVQVGGRSVVCS-DVEQHVIVIEEEKKFLKLLEILGHYQ--EKGSVIIFVDKQEHADGL 620

Query:   446 ENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYS 505
                L ++ +  +++HG   Q++R   ++ FK G C L+VAT VAARGLD+  + +V+NYS
Sbjct:   621 LKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYS 680

Query:   506 FPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
              P   EDYVHR GRTGRAG KG ++TF T      +G+++  L  +   VP  L +  T+
Sbjct:   681 CPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGDILKALELSGSSVPAELEQLWTN 740

Query:   566 VKKKESKLYGAHFREISADAPKAKK 590
              K+++ K  G   +  S  + K  K
Sbjct:   741 FKEQQ-KAEGKIIKSSSGFSGKGFK 764

 Score = 43 (20.2 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query:   142 GKESENGDDETISFFKEED--DGQVVVTGKDVKEAK 175
             G+  EN D + + +  EE+  D Q  +TG   K+ K
Sbjct:   267 GELMEN-DQDAMEYSSEEEEVDLQTALTGFQTKQRK 301


>DICTYBASE|DDB_G0281925 [details] [associations]
            symbol:DDB_G0281925 "DEAD/DEAH box helicase"
            species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
            EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
            ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
            GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
            Uniprot:Q54T87
        Length = 586

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 174/437 (39%), Positives = 256/437 (58%)

Query:   144 ESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKNFKNPSP 203
             + E  +D  +S  +      V++ GK    ++    + FT+ + P       + F  P+ 
Sbjct:    80 KEETKEDIVLSPTEWRKKHNVLIEGK----SQPNPFQKFTDYEFPRMFQHIFQGFTAPTV 135

Query:   204 IQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPT 263
             IQ  +WP +L G D +G+A TGSGKT+AF +PA++ ++S  K  + G    PL LV++PT
Sbjct:   136 IQGQSWPIILGGNDLVGLAATGSGKTLAFLLPALLKIISLPKRPSYG--ATPLVLVMAPT 193

Query:   264 RELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNV 323
             RELA QI +V   + +   ++ +C YGG  K  Q   LR+GVDIVIGTPGRL DL+  + 
Sbjct:   194 RELAQQIEEVCKTSIRGTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLNDLLRKH- 252

Query:   324 CHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDP 383
              HLS V ++VLDEADRMLDMGF   +  ++ +I   RQ +MFSATWP EV  LA +++  
Sbjct:   253 -HLSSVQYLVLDEADRMLDMGFMPQIESLIDQIPKERQTLMFSATWPKEVKLLASKFLK- 310

Query:   384 NPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK----SQRNRVLVFALYQ 439
             +P+K+ VGS++L  + +V Q +  +DD S  Q    + ++ +K       N V+VF   +
Sbjct:   311 DPIKITVGSQELTGSINVTQHIVNIDDLSDLQSDDLIYDEINKILTADPTNTVIVFCNEK 370

Query:   440 LEADRLENMLR-RSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDV 498
              + D  ++ L  +   K + +H  K Q  R   L LF++    +++ATDVAARGLDIP V
Sbjct:   371 YKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATDVAARGLDIPSV 430

Query:   499 EVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDA 558
             + V NY  P   EDYVHRIGRTGRAGK G + ++ T     L  +LV +L+   Q +PD 
Sbjct:   431 KAVFNYRLPGNIEDYVHRIGRTGRAGKTGDAWSYVTTQTPNLR-DLVKILQRTNQKIPDF 489

Query:   559 LLKFGTHVKKKESKLYG 575
             L KF  H ++  S+ YG
Sbjct:   490 LEKFAVHSRQGISR-YG 505


>UNIPROTKB|B4DLW8 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003712 "transcription cofactor activity"
            evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
            HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
            STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
            Uniprot:B4DLW8
        Length = 535

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 148/319 (46%), Positives = 217/319 (68%)

Query:   244 RKGKAVGKRVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALR 302
             R+ K +  R + P+CLVL+PTRELA Q+  V  +  + C +KS C+YGG  K PQI  L 
Sbjct:    77 RRSKEITVRGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE 136

Query:   303 SGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQM 362
              GV+I I TPGRLID +E    +L   +++VLDEADRMLDMGFE  +R I+ +I   RQ 
Sbjct:   137 RGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 196

Query:   363 VMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLE 422
             +M+SATWP EV +LAE+++  + + + +G+ +L+ANH+++QIV+V  D  +D++L+ L+E
Sbjct:   197 LMWSATWPKEVRQLAEDFLK-DYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLME 255

Query:   423 KYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPL 482
             +    + N+ +VF   +   D L   +RR GW  + IHG K+Q ER   L+ FK G  P+
Sbjct:   256 EIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPI 315

Query:   483 MVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAG 542
             ++ATDVA+RGLD+ DV+ VINY +P ++EDY+HRIGRT R+ K G ++TFFT +N     
Sbjct:   316 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVS 375

Query:   543 ELVNVLREARQVVPDALLK 561
             +L++VLREA Q +   LL+
Sbjct:   376 DLISVLREANQAINPKLLQ 394


>TAIR|locus:2037416 [details] [associations]
            symbol:RCF1 "regulator of CBF gene expression 1"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
            HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
            RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
            ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
            EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
            KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
            TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
            ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
            Uniprot:Q8H0U8
        Length = 1166

 Score = 765 (274.4 bits), Expect = 2.5e-75, P = 2.5e-75
 Identities = 175/442 (39%), Positives = 268/442 (60%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             K+      E ++ +++E +  + V GKDV     + +K + ++ L   +L   K  N++ 
Sbjct:   498 KDISRMTQEEVNTYRKELE--LKVHGKDVP----RPIKFWHQTGLTSKILDTMKKLNYEK 551

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVL 260
             P PIQ+ A P +++GRD IG+AKTGSGKT+ F +P + H+      +A G    P+ LV+
Sbjct:   552 PMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA-GD--GPIGLVM 608

Query:   261 SPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLI- 319
             +PTREL  QI+  +    KP G++ V VYGG+    QI+ L+ G +IV+ TPGR+ID++ 
Sbjct:   609 APTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 668

Query:   320 --EMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
                  + +L  V+F+V+DEADRM DMGFE  +  I+  I   RQ V+FSAT+P +V  LA
Sbjct:   669 TSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLA 728

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFAL 437
              + ++  PV++ VG   +  N D+ Q+VEV  +  R  RLL LL ++  S++ ++LVF  
Sbjct:   729 RKVLN-KPVEIQVGGRSVV-NKDITQLVEVRPESDRFLRLLELLGEW--SEKGKILVFVQ 784

Query:   438 YQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497
              Q + D L   + +S +  +++HG K Q +R  ++S FK   C L++AT VAARGLD+ +
Sbjct:   785 SQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKE 844

Query:   498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPD 557
             +E+V+N+  P   EDYVHR+GRTGRAG+KG + TF +  +   A +LV  L  + Q VPD
Sbjct:   845 LELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPD 904

Query:   558 AL--LKFGTHVKKKESKLYGAH 577
              L  L  G  VK K+  +  AH
Sbjct:   905 DLKALADGFMVKVKQG-IEQAH 925


>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
            symbol:PFL1310c "ATP-dependent RNA helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
            metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
            HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
            ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
            EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
            EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
            Uniprot:Q8I5E7
        Length = 742

 Score = 624 (224.7 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
 Identities = 130/307 (42%), Positives = 192/307 (62%)

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             L+L PTREL  Q+ D +    K   +KSV VYGG  K  QI  L+ G DI++ TPGRL+D
Sbjct:   431 LILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRLLD 490

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              +E    +L +  +VV+DEADR+LDMGFE+ +R I+++++  +Q++  +ATWP +V KLA
Sbjct:   491 FLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQVRKLA 550

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFAL 437
              ++   +PVK+ +G  +L AN ++ Q V +       ++LL  L++ +++  N++L+F  
Sbjct:   551 YDFCSYDPVKIQIGKNELTANKNIEQNVIISSSIDMKKKLLDWLKENYEN--NKILIFCD 608

Query:   438 YQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497
              +   D L   LR   +  ++IHG K Q ER + L+ +K   C ++VATDVA+RGLDI +
Sbjct:   609 TKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASRGLDIKN 668

Query:   498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTN-----HNKALAGELVNVLREAR 552
             + VVINY  P T EDY+HRIGRTGRAGKKG S  FF+           A EL+ +L +  
Sbjct:   669 ISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFSYDYYMPQKLKFAKELIKLLNKTN 728

Query:   553 QVVPDAL 559
             Q VP  L
Sbjct:   729 QTVPPQL 735

 Score = 153 (58.9 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query:   176 YKALKSFTESKLPDDVLGCCKN-FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
             +  +  F++    + +L    N F  P+ IQ   WP  L+G+D IG+A+TGSGKT+AF +
Sbjct:   284 HNIINKFSDVCFHESILNYLNNKFSEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVL 343

Query:   235 PAMMHVLSNRK 245
             P  MH+L +++
Sbjct:   344 PCFMHILKHKE 354


>UNIPROTKB|Q9NXZ2 [details] [associations]
            symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
            HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
            IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
            ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
            PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
            Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
            CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
            HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
            InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
            ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
            Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
            GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
        Length = 648

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 165/378 (43%), Positives = 236/378 (62%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             F+ P+PIQS AWP +L G D IG+A+TG+GKT+ + +P  +H++     K  G+R  P  
Sbjct:   262 FQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLK--GQRNRPGM 319

Query:   258 LVLSPTRELADQIY-DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
             LVL+PTRELA Q+  +    + K  G++SVCVYGG ++  QI  L+ GVDI+I TPGRL 
Sbjct:   320 LVLTPTRELALQVEGECCKYSYK--GLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLN 377

Query:   317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKL 376
             DL   N  +L  ++++VLDEAD+MLDMGFE  +  IL  +   RQ VM SATWP  VH+L
Sbjct:   378 DLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATWPHSVHRL 437

Query:   377 AEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFA 436
             A+ Y+   P+ V VG+ DL A   V Q + V  +  +   +   L+    S  ++V+VF 
Sbjct:   438 AQSYLK-EPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSM--SSTDKVIVFV 494

Query:   437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496
               +  AD L + L      V ++HG + Q +R K+L  FK G   +++ATD+A+RGLD+ 
Sbjct:   495 SRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVH 554

Query:   497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVP 556
             DV  V N+ FP   E+YVHRIGRTGRAG+ GVS T  T ++  +A EL+N+L  A Q +P
Sbjct:   555 DVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILERANQSIP 614

Query:   557 DALL----KFGTHVKKKE 570
             + L+    +F  H +K+E
Sbjct:   615 EELVSMAERFKAHQQKRE 632


>ZFIN|ZDB-GENE-080204-77 [details] [associations]
            symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
            GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
            EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
            Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
        Length = 719

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 170/383 (44%), Positives = 243/383 (63%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             FK P+PIQS AWP +LNG D IGIA+TG+GKT+A+ +P  +H+      +   KR  P  
Sbjct:   298 FKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQPMPR--DKRNGPGM 355

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             LVL+PTRELA QI    N      G KS+C+YGG  +  QI  + SGVDIVI TPGRL D
Sbjct:   356 LVLTPTRELALQIEAECNKYSYK-GFKSICIYGGGDRNAQIKVVTSGVDIVIATPGRLND 414

Query:   318 LIEMN-VCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKL 376
             L +MN + +L  ++++VLDEADRMLDMGFE  +  I+  I   RQ VM SATWP  V +L
Sbjct:   415 L-QMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRPDRQTVMTSATWPPGVRRL 473

Query:   377 AEEYMDPNPVKVVVGSEDLAANHDVMQ-IVEVLDDRSRDQRLLALLEKYHKSQR-NRVLV 434
             A+ Y+  +P+ V VG+ DLAA + V Q ++ V +D  +D     + +  H+ +  ++VL+
Sbjct:   474 AKSYLK-DPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDY----VFDFIHRMEPLDKVLI 528

Query:   435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494
             F   +L+AD L + L   G  V ++HG + Q +R ++L  FK+G   ++VATD+A+RGLD
Sbjct:   529 FVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVATDLASRGLD 588

Query:   495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQV 554
             + D+  V NY FP   E+YVHR+GRTGRAG+ G S T  T  +  +A EL+ +L  + Q 
Sbjct:   589 VHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAAELITILERSGQD 648

Query:   555 VPDALLKFGTHVKK--KESKLYG 575
             VP+ L+      +K  +E +++G
Sbjct:   649 VPEELVLMAERYEKHRREKEMFG 671


>UNIPROTKB|F1SQ03 [details] [associations]
            symbol:LOC100524536 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
            ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
            GeneID:100524536 Uniprot:F1SQ03
        Length = 630

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 162/379 (42%), Positives = 234/379 (61%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             F+ P+PIQS AWP +L G D IGIA+TG+GKT+++ +P  +H+  N +  + GKR  P  
Sbjct:   244 FQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHL--NSQPVSRGKRNGPGM 301

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             LVL+PTRELA Q+    +      G+KSVC+YGG +++ QI  +  GVDI+I TPGRL D
Sbjct:   302 LVLTPTRELALQVGAECSKYSYK-GLKSVCIYGGGNRKGQIQDIMKGVDIIIATPGRLND 360

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
             L   N  +L  ++++VLDEAD+MLD+GFE  +  IL  +   RQ +M SATWP  + +LA
Sbjct:   361 LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATWPDTIRQLA 420

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFAL 437
               Y+   P+ V VG+ DL A   V Q + +  +  +       L+    S +++V+VF  
Sbjct:   421 HSYLK-EPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSL--SPKDKVIVFVS 477

Query:   438 YQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497
              +L AD L + L   G  V ++HG + Q +R ++L  FK G   +++ATD+A+RGLD+ D
Sbjct:   478 RKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRGLDVSD 537

Query:   498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPD 557
             V  V NY+FP   E+YVHR+GRTGRAGK G S T  T  +  +AGEL+ +L+ A Q +P+
Sbjct:   538 VTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIEILQRANQSIPE 597

Query:   558 ALLKFGTHVK-KKESKLYG 575
              LL      K  K+ K  G
Sbjct:   598 DLLSMAEQYKLHKQEKETG 616


>UNIPROTKB|I3LHW0 [details] [associations]
            symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
            Uniprot:I3LHW0
        Length = 621

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 162/379 (42%), Positives = 234/379 (61%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             F+ P+PIQS AWP +L G D IGIA+TG+GKT+++ +P  +H+  N +  + GKR  P  
Sbjct:   235 FQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHL--NSQPVSRGKRNGPGM 292

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             LVL+PTRELA Q+    +      G+KSVC+YGG +++ QI  +  GVDI+I TPGRL D
Sbjct:   293 LVLTPTRELALQVGAECSKYSYK-GLKSVCIYGGGNRKGQIQDIMKGVDIIIATPGRLND 351

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
             L   N  +L  ++++VLDEAD+MLD+GFE  +  IL  +   RQ +M SATWP  + +LA
Sbjct:   352 LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATWPDTIRQLA 411

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFAL 437
               Y+   P+ V VG+ DL A   V Q + +  +  +       L+    S +++V+VF  
Sbjct:   412 HSYLK-EPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSL--SPKDKVIVFVS 468

Query:   438 YQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497
              +L AD L + L   G  V ++HG + Q +R ++L  FK G   +++ATD+A+RGLD+ D
Sbjct:   469 RKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRGLDVSD 528

Query:   498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPD 557
             V  V NY+FP   E+YVHR+GRTGRAGK G S T  T  +  +AGEL+ +L+ A Q +P+
Sbjct:   529 VTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIEILQRANQSIPE 588

Query:   558 ALLKFGTHVK-KKESKLYG 575
              LL      K  K+ K  G
Sbjct:   589 DLLSMAEQYKLHKQEKETG 607


>DICTYBASE|DDB_G0275443 [details] [associations]
            symbol:helB1 "putative RNA splicing factor"
            species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
            reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
            GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
            EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
            ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
            GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
            ProtClustDB:CLSZ2500419 Uniprot:Q553B1
        Length = 1151

 Score = 749 (268.7 bits), Expect = 1.3e-73, P = 1.3e-73
 Identities = 168/417 (40%), Positives = 255/417 (61%)

Query:   164 VVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKNFK--NPSPIQSHAWPFLLNGRDFIGI 221
             V +TGKD      K ++S+ ++ L + V    K F+   P+ IQ+   P ++NGRD IGI
Sbjct:   497 VKITGKDCP----KPIQSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGI 552

Query:   222 AKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPC 281
             A+TGSGKT+AF +P   H+L+  K  A G+ +  + L++SPTRELA QI+       K  
Sbjct:   553 ARTGSGKTLAFLLPMFRHILAQPKS-APGEGM--IALIMSPTRELALQIHVECKKFSKVL 609

Query:   282 GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN---VCHLSEVSFVVLDEAD 338
             G+++ CVYGG S   QI  L+ G DIV+ TPGR+ID++  N   + +L  V+F+VLDEAD
Sbjct:   610 GLRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEAD 669

Query:   339 RMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAAN 398
             RM DMGF   +  I+  I   RQ +MFSAT+P +V  +A++ ++  P++++ G   + ++
Sbjct:   670 RMFDMGFGPQINCIVDSIRPDRQTIMFSATFPPKVENVAKKILN-KPLEIIAGGRSIVSS 728

Query:   399 HDVMQIVEVLDDRSRDQRLLALLEK-YHKSQRNRVLVFALYQLEADRLENMLRRSGWKVV 457
              D+ Q VEV    +R +RL+ LL   YHK Q   +L+F   Q   D L   L  S ++ +
Sbjct:   729 -DIEQFVEVRPTETRFRRLIELLSIWYHKGQ---ILIFTNRQETTDNLYRQLSNSQYQCL 784

Query:   458 AIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRI 517
             ++HG K Q +R +++S FK     +++AT +A+RGLDI D+ +V+N+  P   EDYVHR+
Sbjct:   785 SLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRV 844

Query:   518 GRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFG-THVKK-KESK 572
             GRTGRAG +G ++TF T   +  +  ++  L ++   VPD L K   T+ KK KE K
Sbjct:   845 GRTGRAGNRGTAYTFITPDEERFSSSIIKALEQSGSKVPDELRKLNDTYEKKRKEGK 901


>UNIPROTKB|E1BII7 [details] [associations]
            symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
            SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
            EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
            Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
        Length = 647

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 160/375 (42%), Positives = 228/375 (60%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             F+ P+PIQS AWP +L G D IG+A+TG+GKT+++ +P  +H+ S    +    R  P  
Sbjct:   261 FQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQPVLQRA--RNGPGM 318

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             LVL+PTRELA Q+ D         G+KSVC+YGG  +  QI  L  G DI+I TPGRL D
Sbjct:   319 LVLTPTRELALQV-DAECSEYSYRGLKSVCIYGGGDRDGQIKDLSKGADIIIATPGRLHD 377

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
             L   N  +L  ++++VLDEAD+MLDMGFE  +  IL  +   RQ VM SATWP  V +LA
Sbjct:   378 LQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATWPYAVRRLA 437

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFAL 437
             + Y+   P+ V VG+ DL A   V Q + V  +  +   + A ++    S +++V++F  
Sbjct:   438 QSYLK-EPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFIDSM--SPKDKVIIFVS 494

Query:   438 YQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497
              +  AD L + L      V ++HG + Q +R ++L  FK G   +++ATD+A+RGLD+ D
Sbjct:   495 RKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRILIATDLASRGLDVHD 554

Query:   498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPD 557
             V  V NY FP   E+YVHR+GRTGRAG+ GVS T  T ++  +AGEL+N+L  A Q VP+
Sbjct:   555 VTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAGELINILERANQSVPE 614

Query:   558 ALLKFGTHVKKKESK 572
              L+      K  + K
Sbjct:   615 DLVSMAERYKANKLK 629


>UNIPROTKB|F1S0I6 [details] [associations]
            symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
            SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
            EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
            Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
        Length = 650

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 164/387 (42%), Positives = 235/387 (60%)

Query:   188 PDDVLGCCK-NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKG 246
             P+ ++   K  F+ P+PIQS AWP +L G D IG+A+TG+GKT+++ +P  +HV S    
Sbjct:   250 PEVMINIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVV 309

Query:   247 KAVGKRVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGV 305
              ++ +  N P  LVL+PTRELA Q+    +      G+KSVCVYGG  +  QI  L  GV
Sbjct:   310 FSLQRARNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCVYGGGDRDGQIKDLLKGV 368

Query:   306 DIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMF 365
             DI+I TPGRL DL   N  +L  +S++VLDEAD+MLDMGFE  +  IL  I   RQ VM 
Sbjct:   369 DIIIATPGRLNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKILLDIRPDRQTVMT 428

Query:   366 SATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYH 425
             SATWP  V +LA+ Y+   P+ V VG+ DL A   V Q + V  +  +   +   +E   
Sbjct:   429 SATWPYAVRRLAQSYLK-EPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFIESM- 486

Query:   426 KSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVA 485
              S +++V++F   +  AD L + L      V ++HG + Q +R ++L  FK G   +++A
Sbjct:   487 -SPKDKVIIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRILIA 545

Query:   486 TDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELV 545
             TD+A+RGLD+ DV  V NY FP   E+YVHR+GRTGRAG+ GVS T  T  +  +AGEL+
Sbjct:   546 TDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAGELI 605

Query:   546 NVLREARQVVPDALLKFGTHVKKKESK 572
             ++L  A Q +P+ L++     K  + K
Sbjct:   606 HILERANQSIPEDLVEMAERYKANKLK 632


>UNIPROTKB|A4RN46 [details] [associations]
            symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
            PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
            "mycelium development" evidence=IEP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
            GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
            ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
            KEGG:mgr:MGG_15532 Uniprot:A4RN46
        Length = 1012

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 173/430 (40%), Positives = 258/430 (60%)

Query:   145 SENGDDETISFFKEEDDGQVVVTGKDVKEAKYK-ALKSFTESKLPDDVLGCCKNFKNPSP 203
             SE  + E ++  + E DG + V+GKDV +   K +L   T   L  DV+   + +  P+ 
Sbjct:   349 SEMTEAE-VAELRLELDG-IKVSGKDVPKPVQKWSLCGLTRPIL--DVIAKLE-YDKPTA 403

Query:   204 IQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPT 263
             IQ  A P +++GRD +G+AKTGSGKT+AF +P   H+   +  + V     P+ L+L+PT
Sbjct:   404 IQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHI---KDQEPVKDNEGPIGLILTPT 460

Query:   264 RELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN- 322
             RELA QI+       K  G+++VC YGG   + QI  L+ G +IV+ T GR+IDL+  N 
Sbjct:   461 RELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGAEIVVATTGRMIDLLAANQ 520

Query:   323 --VCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEY 380
               V  L   +++VLDEADRM DMGFE  V  I + +   RQ V+FSAT P  +  L ++ 
Sbjct:   521 GRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQTVLFSATMPKIMDALVKKV 580

Query:   381 MDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRN-RVLVFALYQ 439
             +  NPV++ VG + + A+ ++ QIVE+ D++S+  RLL LL + +K   + R L+F   Q
Sbjct:   581 LK-NPVEIEVGGKSVVAS-EITQIVEIRDEKSKFNRLLELLGELYKDDDDVRSLIFVERQ 638

Query:   440 LEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVE 499
              +AD L   L R G+  +++HG K Q +R  ++S FK G CP+M+AT VAARGLD+  ++
Sbjct:   639 EKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGVCPVMIATSVAARGLDVKQLK 698

Query:   500 VVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDAL 559
             +V+NY  P   EDYVHR GRTGRAG  G + TF T   +  A  +   L ++ Q VP+ L
Sbjct:   699 LVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQENCAIGIAKALEQSGQPVPEKL 758

Query:   560 LKFGTHVKKK 569
             ++     ++K
Sbjct:   759 IEMRKAFREK 768


>UNIPROTKB|E9PT29 [details] [associations]
            symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
            norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
            PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
        Length = 651

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 162/406 (39%), Positives = 247/406 (60%)

Query:   163 QVVVTGKDVKEAKYKALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIG 220
             ++ V G DV     K + +F  +  P  V+     ++F  P+PIQ   +P  L+GRD +G
Sbjct:    78 EITVRGGDVCP---KPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVG 134

Query:   221 IAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280
             IA+TGSGKT+A+ +PA++H+  N +   + +   P+  VL P       +Y    D    
Sbjct:   135 IAQTGSGKTLAYLLPAIVHI--NHQ-PYLERGDGPIVSVL-PFFSTLFSVYRGGTDFKFK 190

Query:   281 CG-VKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADR 339
             C  +  VC  G + K  ++  L   V+I I TPGR ID +E    +L   +++VLDEADR
Sbjct:   191 CSSLFWVCFLGQSLKGQRLEWLSQCVEICIATPGR-IDFLESGKTNLRRCTYLVLDEADR 249

Query:   340 MLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANH 399
             MLDMGFE  +R I+ +I   RQ +M+SATWP EV +LAE+++  +  ++ VG+ +L+ANH
Sbjct:   250 MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR-DYTQINVGNLELSANH 308

Query:   400 DVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAI 459
             +++QIV+V  +  +D +L+ L+E+    + N+ ++F   +   D L   +RR GW  + I
Sbjct:   309 NILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCI 368

Query:   460 HGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGR 519
             HG K+Q ER   L+ F+ G  P+++ATDVA+RGLD+ DV+ VINY +P ++EDYVHRIGR
Sbjct:   369 HGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 428

Query:   520 TGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTH 565
             T R+  KG ++TFFT  N   A EL+ VL EA Q +   L++   H
Sbjct:   429 TARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDH 474


>WB|WBGene00013214 [details] [associations]
            symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
            [GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
            HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
            SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
            GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
            WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
            Uniprot:Q9XVZ6
        Length = 504

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 162/371 (43%), Positives = 232/371 (62%)

Query:   196 KN-FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHV---LSNRKGKAVGK 251
             KN F+ PSPIQS  WP LL+G+D IG+++TGSGKT+AF +PA++H+   L+  +     +
Sbjct:   101 KNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQ 160

Query:   252 RVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGT 311
             + +P  LVLSPTRELA QI   +       G KSVC+YGG S+  Q+ A R GV+IVI T
Sbjct:   161 KPSPFVLVLSPTRELAQQIEGEVKKYSYN-GYKSVCLYGGGSRPEQVEACRGGVEIVIAT 219

Query:   312 PGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPI 371
             PGRL DL    V  L+ V++VVLDEADRMLDMGFE  +R IL +I   R + + SATWP 
Sbjct:   220 PGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPDRLVALTSATWPE 279

Query:   372 EVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLAL---LEKYHKSQ 428
              V KL ++Y     V  V GS DL +   V Q  E +   SR  R+  +   L   H  Q
Sbjct:   280 GVRKLTDKYTK-EAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAH-GQ 337

Query:   429 RNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDV 488
               ++++F   ++ AD L +     G     +HG ++Q +R  SL++ + G   ++VATD+
Sbjct:   338 NYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDL 397

Query:   489 AARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVL 548
             A+RG+D+PD+  V+NY FP+  E+YVHR+GRTGRAG+KG + +F   ++++    L+ +L
Sbjct:   398 ASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEGLIQIL 457

Query:   549 REARQVVPDAL 559
              ++ Q VPD L
Sbjct:   458 EKSEQEVPDQL 468


>UNIPROTKB|F1NVJ6 [details] [associations]
            symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
            SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
            EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
            Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
        Length = 642

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 171/430 (39%), Positives = 259/430 (60%)

Query:   151 ETISFFKEEDDGQVVVTGKDVKEAKYKALKS----FTE--SKLPDDVLGCCKN-FKNPSP 203
             E +  +++E++  +     D+KE + + + +    F +   + PD +    K  F+ P+P
Sbjct:   209 EEVELWRKENNNIIC---DDLKEGEKRCIPNPVCKFEDVFEQYPDIMANIRKTGFQKPTP 265

Query:   204 IQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPT 263
             IQS AWP +L G D IGIA+TG+GKT+A+ +P  +H+ S    K   KR  P  LVL+PT
Sbjct:   266 IQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIPK--DKRGGPGMLVLAPT 323

Query:   264 RELADQIY-DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN 322
             RELA Q+  + L    K  G KS+C+YGG  ++ QI  +  GVDIVI TPGRL DL   N
Sbjct:   324 RELALQVEAECLKYTYK--GFKSICIYGGGDRKAQINVVTKGVDIVIATPGRLNDLQMNN 381

Query:   323 VCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMD 382
               +L  ++++  +EADRMLDMGFE  +  IL  +   RQ VM SATWP  V +LA+ Y+ 
Sbjct:   382 FINLKSITYLA-NEADRMLDMGFEPQIMKILIDVRPDRQTVMMSATWPDGVRRLAKSYLR 440

Query:   383 PNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQR--NRVLVFALYQL 440
              NP+ V VG+ DLAA + V Q V V+++  +     A +E +  S +  ++ ++F   + 
Sbjct:   441 -NPMIVYVGTLDLAAVNTVEQKVIVINEEEKK----AFMENFIDSMKPKDKAIIFVGKKS 495

Query:   441 EADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEV 500
              AD + + L   G  V ++HG + Q +R ++L  FK+G   ++VATD+A+RGLD+ D+  
Sbjct:   496 TADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASRGLDVHDITH 555

Query:   501 VINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALL 560
             V N+ FP   E+YVHR+GRTGRAG+ G + T  T  +   A EL+++L+ A+QVVPD L+
Sbjct:   556 VFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELIDILQRAKQVVPDELI 615

Query:   561 KFGTHVKKKE 570
                   K+ +
Sbjct:   616 SMAERYKQHQ 625


>TAIR|locus:2065215 [details] [associations]
            symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
            HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
            IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
            ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
            PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
            KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
            OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
            Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
        Length = 760

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 171/418 (40%), Positives = 247/418 (59%)

Query:   166 VTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAK 223
             V+G DV    ++ +K+F +      ++   K   ++ P+ IQ  A P +L+GRD IGIAK
Sbjct:   218 VSGFDV----HRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAK 273

Query:   224 TGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGV 283
             TGSGKT AF +P ++H++   +   + +   P+ ++ +PTRELA QI+       K  G+
Sbjct:   274 TGSGKTAAFVLPMIVHIMDQPE---LQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGL 330

Query:   284 KSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM 343
             +   VYGG SK  Q   L++G +IV+ TPGRLID+++M    +   S++VLDEADRM D+
Sbjct:   331 RVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDL 390

Query:   344 GFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQ 403
             GFE  VR I+ +I   RQ ++FSAT P +V KLA E +  +P++V VG   +A N D+ Q
Sbjct:   391 GFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILS-DPIRVTVGEVGMA-NEDITQ 448

Query:   404 IVEVLDDRSRDQRLLALLEKYHKS-QRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGK 462
             +V V+   S  ++L  LLEK         VLVFA  +   D +E  L  + +KV A+HG 
Sbjct:   449 VVNVIP--SDAEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGD 506

Query:   463 KAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGR 522
             K Q  R ++L  FK G   +++ATDVAARGLDI  ++ V+NY      + +VHRIGRTGR
Sbjct:   507 KDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGR 566

Query:   523 AGKK-GVSHTFFTNHNKALAGELVNVLREARQVVP----DALLKFGTHVKKKESKLYG 575
             AG + GV++T  T      AGELVN L  A Q VP    D  +K G    K++ +  G
Sbjct:   567 AGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPELTDLAMKDGRFKSKRDGRKGG 624


>TAIR|locus:2041549 [details] [associations]
            symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
            EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
            UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
            PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
            KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
            OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
            GermOnline:AT2G42520 Uniprot:Q84W89
        Length = 633

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 173/429 (40%), Positives = 252/429 (58%)

Query:   150 DETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDV---LGCCKNFKNPSPIQS 206
             D T+  F   +D  +  +G +V       + +F E  L + +   +  CK  K P+P+Q 
Sbjct:   133 DNTVINFDAYEDIPIETSGDNVPPP----VNTFAEIDLGEALNLNIRRCKYVK-PTPVQR 187

Query:   207 HAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRK-GKAVGKR-VNPLCLVLSPTR 264
             HA P LL GRD +  A+TGSGKT AF  P +  ++ ++   +  G R V PL ++LSPTR
Sbjct:   188 HAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTR 247

Query:   265 ELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC 324
             ELA QI+D         GVK V  YGGT    Q+  L  GVDI++ TPGRL DL+E    
Sbjct:   248 ELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARV 307

Query:   325 HLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFSATWPIEVHKLAEEY 380
              +  + F+ LDEADRMLDMGFE  +R I+ ++ +     RQ ++FSAT+P E+ +LA ++
Sbjct:   308 SMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADF 367

Query:   381 MDPNPVKVVVGSEDLAANHD-VMQIVEVLDDRSRDQRLLALLEKYHKS----QRNRVLVF 435
             +  N + + VG   + ++ D ++Q VE + D  +   L+ LL    ++    ++   LVF
Sbjct:   368 L-ANYIFLAVGR--VGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVF 424

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                +  AD LEN L  +G+   +IHG + Q ER  +L  FK G  P++VATDVAARGLDI
Sbjct:   425 VETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDI 484

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVV 555
             P V  V+N+  P   +DYVHRIGRTGRAGK G++  FF + N +LA  L  +++EA Q V
Sbjct:   485 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEV 544

Query:   556 PDALLKFGT 564
             P+ L ++ +
Sbjct:   545 PEWLTRYAS 553


>TAIR|locus:2076436 [details] [associations]
            symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
            EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
            RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
            SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
            EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
            GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
            ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
            Uniprot:Q9M2F9
        Length = 646

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 175/438 (39%), Positives = 255/438 (58%)

Query:   141 NGKESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDV---LGCCKN 197
             N   + N  + T+  F+  +D  +  +G +V       + +F E  L + +   +  CK 
Sbjct:   111 NADPAVNEQENTVINFEAYEDIPIETSGDNVPPP----VNTFAEIDLGEALNLNIQRCKY 166

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRK-GKAVGKR-VNP 255
              K P+P+Q +A P L  GRD +  A+TGSGKT AF  P +  ++ ++   +  G R V P
Sbjct:   167 VK-PTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYP 225

Query:   256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL 315
             L ++LSPTRELA QI+D         GVK V  YGGT    QI  L  GVDI++ TPGRL
Sbjct:   226 LAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRL 285

Query:   316 IDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFSATWPI 371
              DL+E     L  V F+ LDEADRMLDMGFE  +R I+ ++ +     RQ ++FSAT+P 
Sbjct:   286 NDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPR 345

Query:   372 EVHKLAEEYMDPNPVKVVVGSEDLAANHD-VMQIVEVLDDRSRDQRLLALL----EKYHK 426
             E+ +LA +++  N + + VG   + ++ D ++Q VE + D  +   L+ LL    E  ++
Sbjct:   346 EIQRLASDFLS-NYIFLAVGR--VGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQ 402

Query:   427 SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486
              ++   LVF   +  AD LEN L  +G+    IHG ++Q ER  +L  FK G  P++VAT
Sbjct:   403 GKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVAT 462

Query:   487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546
             DVAARGLDIP V  V+N+  P   +DYVHRIGRTGRAG  G++  FF ++N  +A  L  
Sbjct:   463 DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAE 522

Query:   547 VLREARQVVPDALLKFGT 564
             +++EA Q VPD L ++ +
Sbjct:   523 LMQEANQEVPDWLTRYAS 540


>UNIPROTKB|F1NQ09 [details] [associations]
            symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
            IPI:IPI00819782 ProteinModelPortal:F1NQ09
            Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
        Length = 451

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 170/428 (39%), Positives = 255/428 (59%)

Query:   151 ETISFFKEEDDGQVVVTGKDVKEAKYKALKS----FTE--SKLPDDVLGCCKN-FKNPSP 203
             E +  +++E++  +     D+KE + + + +    F +   + PD +    K  F+ P+P
Sbjct:    22 EEVELWRKENNNIIC---DDLKEGEKRCIPNPVCKFEDVFEQYPDIMANIRKTGFQKPTP 78

Query:   204 IQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPT 263
             IQS AWP +L G D IGIA+TG+GKT+A+ +P  +H+ S    K   KR  P  LVL+PT
Sbjct:    79 IQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIPK--DKRGGPGMLVLAPT 136

Query:   264 RELADQIY-DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN 322
             RELA Q+  + L    K  G KS+C+YGG  ++ QI  +  GVDIVI TPGRL DL   N
Sbjct:   137 RELALQVEAECLKYTYK--GFKSICIYGGGDRKAQINVVTKGVDIVIATPGRLNDLQMNN 194

Query:   323 VCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMD 382
               +L  ++++VLDEADRMLDMGFE  +  IL  +   RQ VM SATWP  V +LA+ Y+ 
Sbjct:   195 FINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQTVMMSATWPDGVRRLAKSYLR 254

Query:   383 PNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEA 442
              NP+ V VG+ DLA +  V++ ++   D    + +    + +       V+VF    + A
Sbjct:   255 -NPMIVYVGTLDLAVSGVVLKYLQFDKDIFTWKYMQVNAQSFCTDV---VVVFVQLHVVA 310

Query:   443 DRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVI 502
             D + + L   G  V ++HG + Q +R ++L  FK+G   ++VATD+A+RGLD+ D+  V 
Sbjct:   311 DDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASRGLDVHDITHVF 370

Query:   503 NYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKF 562
             N+ FP   E+YVHR+GRTGRAG+ G + T  T  +   A EL+++L+ A+QVVPD L+  
Sbjct:   371 NFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELIDILQRAKQVVPDELISM 430

Query:   563 GTHVKKKE 570
                 K+ +
Sbjct:   431 AERYKQHQ 438


>UNIPROTKB|E1BJD2 [details] [associations]
            symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0008104 "protein localization" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
            GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
            Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
        Length = 946

 Score = 708 (254.3 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
 Identities = 162/364 (44%), Positives = 222/364 (60%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             +  P+PIQ    P  L+GRD IGIAKTGSGKT AF  P ++H++ ++K    G    P+ 
Sbjct:   273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIM-DQKELEPGD--GPIA 329

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             +++ PTREL  QI+      GK   ++SV VYGG S   Q  AL+ G +IV+ TPGRLID
Sbjct:   330 VIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLID 389

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              ++    +L  VS++V DEADRM DMGFE  VR I S +   RQ ++FSAT+  ++ KLA
Sbjct:   390 HVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLA 449

Query:   378 EEYMDPNPVKVVVGSEDLA-ANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFA 436
              + +  +P++VV G  D+  AN DV QIVE+L   S+   L   L ++  S    VL+F 
Sbjct:   450 RDILI-DPIRVVQG--DIGEANEDVTQIVEILHSGSKWNWLTRRLVEFTSS--GSVLLFV 504

Query:   437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496
               +  A+ L N L++ G  +  +HG   Q ER K +S FK+   P++VATDVAARGLDIP
Sbjct:   505 TKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIP 564

Query:   497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVP 556
              ++ VINY      + + HRIGRTGRAG+KGV++T  T  +   AG+LV  L  A Q V 
Sbjct:   565 SIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVS 624

Query:   557 DALL 560
               LL
Sbjct:   625 KELL 628

 Score = 39 (18.8 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query:   142 GKESENGDDETISFFKEEDDGQVV 165
             G +  N D+E   F  EE+D   V
Sbjct:    63 GSKRANFDEENAYFEDEEEDSSNV 86


>WB|WBGene00018776 [details] [associations]
            symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
            "morphogenesis of an epithelium" evidence=IMP] [GO:0040035
            "hermaphrodite genitalia development" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
            [GO:0040018 "positive regulation of multicellular organism growth"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
            "growth" evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
            GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
            GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
            GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
            HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
            RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
            PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
            KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
            InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
        Length = 970

 Score = 706 (253.6 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
 Identities = 162/416 (38%), Positives = 248/416 (59%)

Query:   153 ISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKNFK--NPSPIQSHAWP 210
             +  ++EE D  + V G D      K +K++ +  +   ++   K F+   P+ IQ+ A P
Sbjct:   282 VKAYREELDS-ITVKGIDCP----KPIKTWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIP 336

Query:   211 FLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQI 270
              +++GRD IGIAKTGSGKT+AF +P   H+L   +   + +   P+ ++L+PTRELA Q 
Sbjct:   337 SIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPE---LEEGDGPIAVILAPTRELAMQT 393

Query:   271 YDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN---VCHLS 327
             Y   N   KP G+K  C YGG     QI  L+ G +IV+ TPGR+ID++  N   V +L 
Sbjct:   394 YKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVLAANSGKVTNLR 453

Query:   328 EVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVK 387
              V+++VLDEADRM D GFE  +  +++ I   +Q V+FSAT+P  +  LA + +D  PV+
Sbjct:   454 RVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPRHMEALARKVLD-KPVE 512

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
             ++VG + +  + D+ Q   +  +  +  +LL LL  Y++   +  +VF   Q +AD + +
Sbjct:   513 ILVGGKSVVCS-DITQNAVICAEHQKFLKLLELLGMYYEEGSS--IVFVDKQEKADDIVD 569

Query:   448 MLRRSGWKVVA-IHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSF 506
              L R+G+  VA +HG   QH+R  S++ FK G   ++VAT VAARGLD+ ++ +V+NY  
Sbjct:   570 QLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDC 629

Query:   507 PLTTEDYVHRIGRTGRAGKKGVSHTF-FTNHNKALAGELVNVLREARQVVPDALLK 561
             P   EDYVHR+GRTGRAG+KG ++TF    H + +AGE+     E     P A LK
Sbjct:   630 PNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAF-ETAGCKPPADLK 684

 Score = 41 (19.5 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query:   538 KALAGELVNVLREARQVVPDALLKFGTHVKKK 569
             KA   E++ +++EA + +   L + GT  + K
Sbjct:   938 KAAKEEIIRIMKEAFRQLTAQLQRGGTQARYK 969


>UNIPROTKB|G3MYF0 [details] [associations]
            symbol:LOC100300937 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
            Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
        Length = 608

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 156/380 (41%), Positives = 232/380 (61%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             F+ P+PIQS +WP +L G D IGIA+TG+GKT+++ +P  +H+ S    +   +R  P  
Sbjct:   221 FQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHSQPVSRK--QRNGPGM 278

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             LVL+PTRELA Q+    +      G+KSVC+YGG +++ QI  +  GVDI+I TPGRL D
Sbjct:   279 LVLTPTRELALQVEAECSKYLYK-GLKSVCIYGGGNRKGQIQDVTKGVDIIIATPGRLND 337

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
             L   N  +L  ++++VLDEAD+MLD+GFE  +  IL  +   RQ VM +A+WP    +LA
Sbjct:   338 LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMTTASWPDSTRRLA 397

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFAL 437
             + Y+   P+ V VG+ DL   + V Q + V  +  +   +   L+    S +++V+VF  
Sbjct:   398 QSYLK-QPMIVYVGTLDLVTVNTVKQNIIVTTEEEKRSLVKEFLQSL--SPKDKVIVFVS 454

Query:   438 YQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497
              +L AD L + L   G  V ++HG + Q +R ++L  F+ G   +++ATD+AARGLD+ D
Sbjct:   455 RKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFRTGRVKILIATDLAARGLDVSD 514

Query:   498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPD 557
             V  V NY+FP   E+YVHR+GRTGRAGK G S T  T  +  +A EL+ +L+ A Q+VP 
Sbjct:   515 VTHVYNYNFPRNIEEYVHRVGRTGRAGKIGESITLVTQDDWKIADELIKILQRANQIVPP 574

Query:   558 ALLKFGTHVKKKESKLYGAH 577
             +L       KK+  +    H
Sbjct:   575 SLRSMADRFKKQHKQKNQPH 594


>UNIPROTKB|E2RFF1 [details] [associations]
            symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
            GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
            Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
        Length = 933

 Score = 699 (251.1 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
 Identities = 162/365 (44%), Positives = 222/365 (60%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             +  P+PIQ    P  L+GRD IGIAKTGSGKT AF  P ++H++ ++K    G    P+ 
Sbjct:   273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIM-DQKELEPGD--GPIA 329

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             +++ PTREL  QI+      GK   ++SV VYGG S   Q  AL+ G +IV+ TPGRLID
Sbjct:   330 VIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLID 389

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              ++    +L  VS++V DEADRM DMGFE  VR I S +   RQ ++FSAT+  ++ KLA
Sbjct:   390 HVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLA 449

Query:   378 EEYMDPNPVKVVVGSEDLA-ANHDVMQIVEVLDDR-SRDQRLLALLEKYHKSQRNRVLVF 435
              + +  +P++VV G  D+  AN DV QIVE+L    S+   L   L ++  S    VL+F
Sbjct:   450 RDILI-DPIRVVQG--DIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS--GSVLLF 504

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                +  A+ L N L++ G  +  +HG   Q ER K +S FK+   P++VATDVAARGLDI
Sbjct:   505 VTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDI 564

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVV 555
             P ++ VINY      + + HRIGRTGRAG+KGV++T  T  +   AG+LV  L  A Q V
Sbjct:   565 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHV 624

Query:   556 PDALL 560
                LL
Sbjct:   625 SKELL 629

 Score = 39 (18.8 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query:   142 GKESENGDDETISFFKEEDDGQVV 165
             G +  N D+E   F  EE+D   V
Sbjct:    63 GSKRANFDEENAYFEDEEEDSSNV 86


>UNIPROTKB|Q86XP3 [details] [associations]
            symbol:DDX42 "ATP-dependent RNA helicase DDX42"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
            evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
            localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
            EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
            OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
            EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
            EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
            PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
            ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
            MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
            PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
            Ensembl:ENST00000389924 Ensembl:ENST00000457800
            Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
            KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
            HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
            MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
            InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
            NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
            Genevestigator:Q86XP3 Uniprot:Q86XP3
        Length = 938

 Score = 699 (251.1 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
 Identities = 162/365 (44%), Positives = 222/365 (60%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             +  P+PIQ    P  L+GRD IGIAKTGSGKT AF  P ++H++ ++K    G    P+ 
Sbjct:   273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIM-DQKELEPGD--GPIA 329

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             +++ PTREL  QI+      GK   ++SV VYGG S   Q  AL+ G +IV+ TPGRLID
Sbjct:   330 VIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLID 389

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              ++    +L  VS++V DEADRM DMGFE  VR I S +   RQ ++FSAT+  ++ KLA
Sbjct:   390 HVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLA 449

Query:   378 EEYMDPNPVKVVVGSEDLA-ANHDVMQIVEVLDDR-SRDQRLLALLEKYHKSQRNRVLVF 435
              + +  +P++VV G  D+  AN DV QIVE+L    S+   L   L ++  S    VL+F
Sbjct:   450 RDILI-DPIRVVQG--DIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS--GSVLLF 504

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                +  A+ L N L++ G  +  +HG   Q ER K +S FK+   P++VATDVAARGLDI
Sbjct:   505 VTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDI 564

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVV 555
             P ++ VINY      + + HRIGRTGRAG+KGV++T  T  +   AG+LV  L  A Q V
Sbjct:   565 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHV 624

Query:   556 PDALL 560
                LL
Sbjct:   625 SKELL 629

 Score = 39 (18.8 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query:   142 GKESENGDDETISFFKEEDDGQVV 165
             G +  N D+E   F  EE+D   V
Sbjct:    63 GSKRANFDEENAYFEDEEEDSSNV 86


>UNIPROTKB|F1RSJ7 [details] [associations]
            symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008104 "protein localization" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
            GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
            Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
        Length = 941

 Score = 699 (251.1 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
 Identities = 162/365 (44%), Positives = 222/365 (60%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             +  P+PIQ    P  L+GRD IGIAKTGSGKT AF  P ++H++ ++K    G    P+ 
Sbjct:   273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIM-DQKELEPGD--GPIA 329

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             +++ PTREL  QI+      GK   ++SV VYGG S   Q  AL+ G +IV+ TPGRLID
Sbjct:   330 VIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLID 389

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              ++    +L  VS++V DEADRM DMGFE  VR I S +   RQ ++FSAT+  ++ KLA
Sbjct:   390 HVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLA 449

Query:   378 EEYMDPNPVKVVVGSEDLA-ANHDVMQIVEVLDDR-SRDQRLLALLEKYHKSQRNRVLVF 435
              + +  +P++VV G  D+  AN DV QIVE+L    S+   L   L ++  S    VL+F
Sbjct:   450 RDILI-DPIRVVQG--DIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS--GSVLLF 504

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                +  A+ L N L++ G  +  +HG   Q ER K +S FK+   P++VATDVAARGLDI
Sbjct:   505 VTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDI 564

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVV 555
             P ++ VINY      + + HRIGRTGRAG+KGV++T  T  +   AG+LV  L  A Q V
Sbjct:   565 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHV 624

Query:   556 PDALL 560
                LL
Sbjct:   625 SKELL 629

 Score = 39 (18.8 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query:   142 GKESENGDDETISFFKEEDDGQVV 165
             G +  N D+E   F  EE+D   V
Sbjct:    63 GSKRANFDEENAYFEDEEEDSSNV 86


>FB|FBgn0036104 [details] [associations]
            symbol:CG6418 species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
            GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
            GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
            UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
            STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
            KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
            InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
            NextBio:812543 Uniprot:Q9VTC1
        Length = 791

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 161/366 (43%), Positives = 225/366 (61%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             +  P+PIQ+ A P  L+GRD IGIAKTGSGKT AF  P +MHV+  ++ K  G    P+ 
Sbjct:   289 YTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKP-GD--GPIG 345

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             L+L+PTREL+ QIY+     GK   +  VC YGG SK  Q  AL  G +I++ TPGR+ID
Sbjct:   346 LILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATPGRMID 405

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
             +++M   +L  V+F+VLDEADRM  MGFE  VR I + +   RQ +MFSAT+   + +LA
Sbjct:   406 MVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSATFKKRIERLA 465

Query:   378 EEYMDPNPVKVVVGSEDL-AANHDVMQIVEVLDDRSRDQR-LLALLEKYHKSQRNRVLVF 435
              + +  +PV++V G  DL  AN D+ Q V V  +  +    LL  L K+       VL+F
Sbjct:   466 RDVLS-DPVRIVQG--DLNEANQDITQSVYVFPNPLQKWNWLLCHLVKF--LSEGSVLIF 520

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                +++A+ + N L    +  + +HG   Q +R K ++ FK   C ++VATDVAARGLDI
Sbjct:   521 VTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLDI 580

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVV 555
             P +  V+NY      E + HRIGRTGRAG+KG ++T  T+ +K  AG LV  L  A Q+V
Sbjct:   581 PHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGHLVRNLEGADQLV 640

Query:   556 PDALLK 561
             PD L++
Sbjct:   641 PDDLME 646


>UNIPROTKB|Q5R7D1 [details] [associations]
            symbol:DDX42 "ATP-dependent RNA helicase DDX42"
            species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
            localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
            GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
            CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
            RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
            GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
        Length = 942

 Score = 696 (250.1 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
 Identities = 162/365 (44%), Positives = 222/365 (60%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             +  P+PIQ    P  L+GRD IGIAKTGSGKT AF  P ++H++ ++K    G    P+ 
Sbjct:   273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIM-DQKELEPGD--GPIA 329

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             +++ PTREL  QI+      GK   ++SV VYGG S   Q  AL+ G +IV+ TPGRLID
Sbjct:   330 VIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLID 389

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              ++    +L  VS++V DEADRM DMGFE  VR I S +   RQ ++FSAT+  ++ KLA
Sbjct:   390 HVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLA 449

Query:   378 EEYMDPNPVKVVVGSEDLA-ANHDVMQIVEVLDDR-SRDQRLLALLEKYHKSQRNRVLVF 435
              + +  +P++VV G  D+  AN DV QIVE+L    S+   L   L ++  S    VL+F
Sbjct:   450 RDILI-DPIRVVQG--DIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS--GSVLLF 504

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                +  A+ L N L++ G  +  +HG   Q ER K +S FK+   P++VATDVAARGLDI
Sbjct:   505 VTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDI 564

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVV 555
             P ++ VINY      + + HRIGRTGRAG+KGV++T  T  +   AG+LV  L  A Q V
Sbjct:   565 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHV 624

Query:   556 PDALL 560
                LL
Sbjct:   625 SKELL 629

 Score = 39 (18.8 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query:   142 GKESENGDDETISFFKEEDDGQVV 165
             G +  N D+E   F  EE+D   V
Sbjct:    63 GSKRANFDEENAYFEDEEEDSSNV 86


>MGI|MGI:1919297 [details] [associations]
            symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
            evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
            GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
            CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
            OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
            EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
            IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
            ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
            PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
            Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
            UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
            InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
            Genevestigator:Q810A7 Uniprot:Q810A7
        Length = 929

 Score = 694 (249.4 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
 Identities = 161/365 (44%), Positives = 222/365 (60%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             +  P+PIQ    P  L+GRD IGIAKTGSGKT AF  P ++H++ ++K    G    P+ 
Sbjct:   273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIM-DQKELEPGD--GPIA 329

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             +++ PTREL  QI+      GK   ++SV VYGG S   Q  AL+ G +IV+ TPGRLID
Sbjct:   330 VIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLID 389

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              ++    +L  VS++V DEADRM DMGFE  VR I S +   RQ ++FSAT+  ++ KLA
Sbjct:   390 HVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLA 449

Query:   378 EEYMDPNPVKVVVGSEDLA-ANHDVMQIVEVLDDR-SRDQRLLALLEKYHKSQRNRVLVF 435
              + +  +P++VV G  D+  AN DV QIVE+L    S+   L   L ++  S    VL+F
Sbjct:   450 RDILI-DPIRVVQG--DIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS--GSVLLF 504

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                +  A+ L + L++ G  +  +HG   Q ER K +S FK+   P++VATDVAARGLDI
Sbjct:   505 VTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDI 564

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVV 555
             P ++ VINY      + + HRIGRTGRAG+KGV++T  T  +   AG+LV  L  A Q V
Sbjct:   565 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHV 624

Query:   556 PDALL 560
                LL
Sbjct:   625 SKELL 629

 Score = 39 (18.8 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query:   142 GKESENGDDETISFFKEEDDGQVV 165
             G +  N D+E   F  EE+D   V
Sbjct:    63 GSKRANFDEENAYFEDEEEDSSNV 86


>RGD|1304909 [details] [associations]
            symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
            evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
            [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
            GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
            IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
            Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
            UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
        Length = 929

 Score = 693 (249.0 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
 Identities = 161/365 (44%), Positives = 221/365 (60%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             +  P+PIQ    P  L+GRD IGIAKTGSGKT AF  P ++H++ ++K    G    P+ 
Sbjct:   273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIM-DQKELEPGD--GPIA 329

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             +++ PTREL  QI+      GK   ++SV VYGG S   Q  AL+ G +IV+ TPGRLID
Sbjct:   330 VIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLID 389

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              ++    +L  VS++V DEADRM DMGFE  VR I S +   RQ ++FSAT+  ++ KLA
Sbjct:   390 HVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLA 449

Query:   378 EEYMDPNPVKVVVGSEDLA-ANHDVMQIVEVLDDR-SRDQRLLALLEKYHKSQRNRVLVF 435
              + +  +P++VV G  D+  AN DV QIVE+L    S+   L   L ++  S    VL+F
Sbjct:   450 RDILI-DPIRVVQG--DIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS--GSVLLF 504

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                +  A+ L N L++ G  +  +HG   Q ER K +  FK+   P++VATDVAARGLDI
Sbjct:   505 VTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPVLVATDVAARGLDI 564

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVV 555
             P ++ VINY      + + HRIGRTGRAG+KGV++T  T  +   AG+LV  L  A Q V
Sbjct:   565 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHV 624

Query:   556 PDALL 560
                LL
Sbjct:   625 SKELL 629

 Score = 39 (18.8 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query:   142 GKESENGDDETISFFKEEDDGQVV 165
             G +  N D+E   F  EE+D   V
Sbjct:    63 GSKRANFDEENAYFEDEEEDSSNV 86


>TAIR|locus:2076351 [details] [associations]
            symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
            evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
            GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
            GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
            EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
            IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
            RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
            UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
            STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
            EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
            KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
            OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
            Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
        Length = 612

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 174/442 (39%), Positives = 252/442 (57%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDV---LGCCKNFKNPSPIQSHAWPFL 212
             F   +D  V  +G DV       + +F +  L D +   +  CK +  P+P+Q HA P L
Sbjct:   131 FDAYEDIPVETSGGDVPPP----VNTFADIDLGDALNLNIRRCK-YVRPTPVQRHAIPIL 185

Query:   213 LNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRK-GKAVGKR-VNPLCLVLSPTRELADQI 270
             L  RD +  A+TGSGKT AF  P +  ++ ++   +  G R V P  ++LSPTRELA QI
Sbjct:   186 LAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245

Query:   271 YDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVS 330
             +D         GVK V  YGGT    Q+  L  G DI++ TPGRL DL+E     +  + 
Sbjct:   246 HDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIR 305

Query:   331 FVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFSATWPIEVHKLAEEYMDPNPV 386
             F+ LDEADRMLDMGFE  +R I+ ++ +     RQ ++FSAT+P ++ +LA ++M  N +
Sbjct:   306 FLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMS-NYI 364

Query:   387 KVVVGSEDLAANHDVM-QIVEVLDDRSRDQRLLALLEKYHKSQ--RNRVLVFALYQLEAD 443
              + VG   + ++ D++ Q VE + +  +   L+ LL    ++Q  ++  LVF   +  AD
Sbjct:   365 FLAVGR--VGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGAD 422

Query:   444 RLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVIN 503
              LEN L  + +   +IHG + Q ER  +L  FK G  P++VATDVAARGLDIP V  V+N
Sbjct:   423 TLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVN 482

Query:   504 YSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFG 563
             +  P   +DYVHRIGRTGRAGK G++  FF  +N  LA  L  +++EA Q VP+ L ++ 
Sbjct:   483 FDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRYA 542

Query:   564 THVK----KKES--KLYGAHFR 579
             +       KK S  +  G  FR
Sbjct:   543 SRASFGGGKKRSGGRFGGRDFR 564


>UNIPROTKB|F1NJ40 [details] [associations]
            symbol:DDX42 "ATP-dependent RNA helicase DDX42"
            species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
            GeneTree:ENSGT00610000086076 EMBL:AADN02056764
            Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
        Length = 946

 Score = 686 (246.5 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
 Identities = 158/365 (43%), Positives = 220/365 (60%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             +  P+PIQ    P  ++GRD IGIAKTGSGKT AF  P ++H++ ++K    G    P+ 
Sbjct:   275 YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIM-DQKELEPGD--GPIA 331

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             +++ PTREL  QI+      GK   ++SV VYGG S   Q  AL+ G +IV+ TPGRLID
Sbjct:   332 VIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLID 391

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              ++    +L  V+++V DEADRM DMGFE  VR I S +   RQ ++FSAT+  ++ KLA
Sbjct:   392 HVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLA 451

Query:   378 EEYMDPNPVKVVVGSEDLA-ANHDVMQIVEVLDDR-SRDQRLLALLEKYHKSQRNRVLVF 435
              + +  +P++VV G  D+  AN DV QIVE+     S+   L   L ++  S    VL+F
Sbjct:   452 RDILI-DPIRVVQG--DIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSS--GSVLLF 506

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                +  A+ L N L++    +  +HG   Q ER K +S FK+   P++VATDVAARGLDI
Sbjct:   507 VTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDI 566

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVV 555
             P ++ VINY      + + HRIGRTGRAG+KGV++T  T  +   AG+LV  L  A Q V
Sbjct:   567 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHV 626

Query:   556 PDALL 560
                LL
Sbjct:   627 SKELL 631

 Score = 39 (18.8 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query:   142 GKESENGDDETISFFKEEDDGQVV 165
             G +  N D+E   F  EE+D   V
Sbjct:    63 GSKRANFDEENAYFEDEEEDNSNV 86


>UNIPROTKB|F1P0H1 [details] [associations]
            symbol:DDX42 "ATP-dependent RNA helicase DDX42"
            species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
            IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
            Uniprot:F1P0H1
        Length = 703

 Score = 686 (246.5 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
 Identities = 158/365 (43%), Positives = 220/365 (60%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             +  P+PIQ    P  ++GRD IGIAKTGSGKT AF  P ++H++ ++K    G    P+ 
Sbjct:   268 YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIM-DQKELEPGD--GPIA 324

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             +++ PTREL  QI+      GK   ++SV VYGG S   Q  AL+ G +IV+ TPGRLID
Sbjct:   325 VIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLID 384

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              ++    +L  V+++V DEADRM DMGFE  VR I S +   RQ ++FSAT+  ++ KLA
Sbjct:   385 HVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLA 444

Query:   378 EEYMDPNPVKVVVGSEDLA-ANHDVMQIVEVLDDR-SRDQRLLALLEKYHKSQRNRVLVF 435
              + +  +P++VV G  D+  AN DV QIVE+     S+   L   L ++  S    VL+F
Sbjct:   445 RDILI-DPIRVVQG--DIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSS--GSVLLF 499

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                +  A+ L N L++    +  +HG   Q ER K +S FK+   P++VATDVAARGLDI
Sbjct:   500 VTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDI 559

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVV 555
             P ++ VINY      + + HRIGRTGRAG+KGV++T  T  +   AG+LV  L  A Q V
Sbjct:   560 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHV 619

Query:   556 PDALL 560
                LL
Sbjct:   620 SKELL 624

 Score = 39 (18.8 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query:   142 GKESENGDDETISFFKEEDDGQVV 165
             G +  N D+E   F  EE+D   V
Sbjct:    58 GSKRANFDEENAYFEDEEEDNSNV 81


>UNIPROTKB|Q5F485 [details] [associations]
            symbol:DDX42 "ATP-dependent RNA helicase DDX42"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
            localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
            EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
            UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
            GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
            HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
            NextBio:20822943 Uniprot:Q5F485
        Length = 944

 Score = 686 (246.5 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
 Identities = 158/365 (43%), Positives = 220/365 (60%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             +  P+PIQ    P  ++GRD IGIAKTGSGKT AF  P ++H++ ++K    G    P+ 
Sbjct:   273 YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIM-DQKELEPGD--GPIA 329

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             +++ PTREL  QI+      GK   ++SV VYGG S   Q  AL+ G +IV+ TPGRLID
Sbjct:   330 VIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLID 389

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              ++    +L  V+++V DEADRM DMGFE  VR I S +   RQ ++FSAT+  ++ KLA
Sbjct:   390 HVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLA 449

Query:   378 EEYMDPNPVKVVVGSEDLA-ANHDVMQIVEVLDDR-SRDQRLLALLEKYHKSQRNRVLVF 435
              + +  +P++VV G  D+  AN DV QIVE+     S+   L   L ++  S    VL+F
Sbjct:   450 RDILI-DPIRVVQG--DIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSS--GSVLLF 504

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                +  A+ L N L++    +  +HG   Q ER K +S FK+   P++VATDVAARGLDI
Sbjct:   505 VTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDI 564

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVV 555
             P ++ VINY      + + HRIGRTGRAG+KGV++T  T  +   AG+LV  L  A Q V
Sbjct:   565 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHV 624

Query:   556 PDALL 560
                LL
Sbjct:   625 SKELL 629

 Score = 39 (18.8 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query:   142 GKESENGDDETISFFKEEDDGQVV 165
             G +  N D+E   F  EE+D   V
Sbjct:    63 GSKRANFDEENAYFEDEEEDNSNV 86


>ASPGD|ASPL0000055571 [details] [associations]
            symbol:AN1266 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
            EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
            OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
            RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
            EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
            Uniprot:Q5BDW4
        Length = 1173

 Score = 711 (255.3 bits), Expect = 2.1e-69, P = 2.1e-69
 Identities = 168/420 (40%), Positives = 246/420 (58%)

Query:   150 DETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPD--DVLGCCKNFKNPSPIQSH 207
             +E  +  + E DG + V G DV +   K  +     +  D  D LG    F + + IQ+ 
Sbjct:   516 EEEAANLRLELDG-IKVRGLDVPKPVQKWSQCGLGIQTLDVIDKLG----FASLTSIQAQ 570

Query:   208 AWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELA 267
             A P +++GRD IG+AKTGSGKT+AF +P   H+   R    +     P+ L+++PTRELA
Sbjct:   571 AIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHIKDQRP---LENMEGPIGLIMTPTRELA 627

Query:   268 DQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN---VC 324
              QI+       K   +++VC YGG   + QI  L+ G +I++ TPGR+IDL+  N   V 
Sbjct:   628 TQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCTPGRMIDLLAANAGRVT 687

Query:   325 HLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPN 384
             +L  V++VVLDEADRM DMGFE  V  ILS +   RQ V+FSAT+P  +  LA + +   
Sbjct:   688 NLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQTVLFSATFPRNMEALARKTLT-K 746

Query:   385 PVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRN---RVLVFALYQLE 441
             P+++VVG   + A  ++ QIVEV ++  +  RLL LL   + +  N   R L+F   Q  
Sbjct:   747 PIEIVVGGRSVVAP-EITQIVEVCNEEKKFVRLLELLGNLYSTDENEDARSLIFVDRQEA 805

Query:   442 ADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVV 501
             AD L   L R G+  ++IHG K Q +R  ++  FK G  P+++AT VAARGLD+  +++V
Sbjct:   806 ADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLV 865

Query:   502 INYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLK 561
             +NY  P   EDYVHR GRTGRAG  G + TF T   +  + ++   L+++ Q VP+A+ K
Sbjct:   866 VNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKALKQSGQEVPEAVQK 925


>POMBASE|SPCC10H11.01 [details] [associations]
            symbol:prp11 "ATP-dependent RNA helicase Prp11"
            species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
            "spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
            [GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
            EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
            RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
            IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
            GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
            NextBio:20800113 Uniprot:Q9P7C7
        Length = 1014

 Score = 704 (252.9 bits), Expect = 3.3e-69, P = 3.3e-69
 Identities = 160/389 (41%), Positives = 235/389 (60%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             ++ P+ IQ+ A P + +GRD IG+AKTGSGKTIAF +P   H+   R  K  G+   P+ 
Sbjct:   438 YEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKT-GE--GPIA 494

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             ++++PTRELA QI+       K   +++ C YGG   + QI  L+ G +IV+ TPGR+ID
Sbjct:   495 IIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMID 554

Query:   318 LIEMN---VCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVH 374
             ++  N   V +L   +++VLDEADRM D+GFE  V  I++ I   RQ V+FSAT+P  + 
Sbjct:   555 VLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAME 614

Query:   375 KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRN-RVL 433
              LA + +   PV++ VG   + A+ +V QIVEV  + S+  RLL LL + + +Q + R L
Sbjct:   615 ALARKVLK-KPVEITVGGRSVVAS-EVEQIVEVRPEESKFSRLLELLGELYNNQLDVRTL 672

Query:   434 VFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGL 493
             VF   Q  AD L + L + G+   +IHG K QH+R  ++S +K G   +++AT V ARGL
Sbjct:   673 VFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGL 732

Query:   494 DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQ 553
             D+  +++V+NY  P   EDYVHR+GRTGRAG  GV+ TF T   +  A ++   L+ ++Q
Sbjct:   733 DVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQ 792

Query:   554 VVPDALL----KFGTHVKKKESKLYGAHF 578
              VP  L     +F   VK  + K  G  F
Sbjct:   793 PVPKELQTLASQFLEKVKAGKEKAAGGGF 821


>ZFIN|ZDB-GENE-050706-53 [details] [associations]
            symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
            Uniprot:E7F401
        Length = 910

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 157/364 (43%), Positives = 218/364 (59%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             +  P+PIQ    P  L+GRD IGIAKTGSGKT AF  P ++H++ ++K    G+   P+ 
Sbjct:   277 YTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIM-DQKELEPGE--GPIA 333

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             +++ PTREL  QI+      GK  G++SV VYGG S   Q  AL+ G +IV+ TPGRLID
Sbjct:   334 VIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLID 393

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              ++     L  V+F+V DEADRM DMGFE  VR I S +   RQ ++FSAT+  ++ KLA
Sbjct:   394 HVKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLA 453

Query:   378 EEYMDPNPVKVVVGSEDLA-ANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFA 436
              + +  +P++VV G  D+  AN D+ QIVEVL    +D+           +    VLVF 
Sbjct:   454 RDIL-VDPIRVVQG--DIGEANEDITQIVEVLQS-GQDKWGWLTRRLVEFTSAGSVLVFV 509

Query:   437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496
               +   + L   L + G+ +  +HG   Q ER K ++ FK+   P++VATDVAARGLDIP
Sbjct:   510 TKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAARGLDIP 569

Query:   497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVP 556
              +  V+NY      + + HRIGRTGRAG+KGV++T  T  + + AG+LV  L  A Q V 
Sbjct:   570 SIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTSFAGDLVRNLEGANQSVS 629

Query:   557 DALL 560
               LL
Sbjct:   630 KDLL 633


>FB|FBgn0030631 [details] [associations]
            symbol:CG6227 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
            activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
            evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
            HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
            EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
            EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
            RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
            EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
            UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
            Uniprot:Q9VXW2
        Length = 1224

 Score = 695 (249.7 bits), Expect = 1.4e-67, P = 1.4e-67
 Identities = 153/373 (41%), Positives = 225/373 (60%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             F+ P+PIQ  A P +++GRD IGIAKTGSGKT+AF +P   H+L ++     G     + 
Sbjct:   530 FEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMEDGD--GAIA 586

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             ++++PTREL  QI   +    K  G++ VCVYGGT    QI  L+ G +I++ TPGR+ID
Sbjct:   587 IIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMID 646

Query:   318 LIEMN---VCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVH 374
             ++  N   V +L  V++VVLDEADRM DMGFE  V  I+  +   RQ VMFSAT+P ++ 
Sbjct:   647 MLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQME 706

Query:   375 KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLV 434
              LA   +   P++V+VG   +    +V Q V +L+D ++  +LL LL  Y ++    ++V
Sbjct:   707 ALARRILK-KPIEVIVGGRSVVCK-EVEQHVVILNDDAKFFKLLELLGIYQEA--GSIIV 762

Query:   435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494
             F   Q  AD L   L ++ +  +++HG   Q +R  ++  FK G   L++AT VAARGLD
Sbjct:   763 FVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLD 822

Query:   495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQV 554
             + D+ +V+NY  P   EDYVHR GRTGRAGKKG ++TF T      AG+++  +  +  +
Sbjct:   823 VKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGTL 882

Query:   555 VPDALLKFGTHVK 567
             +P  L    T  K
Sbjct:   883 IPAELQALWTEYK 895


>WB|WBGene00006888 [details] [associations]
            symbol:vbh-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0032502 "developmental process"
            evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
            evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
            germ-line" evidence=IMP] [GO:0042127 "regulation of cell
            proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
            evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
            GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
            GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
            HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
            GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
            ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
            MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
            EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
            GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
            WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
            ArrayExpress:Q65XX1 Uniprot:Q65XX1
        Length = 660

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 166/423 (39%), Positives = 243/423 (57%)

Query:   150 DETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSH 207
             D  I+F K E+   V V+G  V  A    ++ F E+     V+       +  P+P+Q H
Sbjct:   114 DSGINFDKYENI-PVEVSGDSVPAA----IEHFNEAGFGPAVMENVNRSGYSKPTPVQKH 168

Query:   208 AWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNR----KGKAV--GKRVN-PLCLVL 260
             + P LL  RD +  A+TGSGKT AF +P + H+L+      K  A   G+R   P  LVL
Sbjct:   169 SIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVL 228

Query:   261 SPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK-QPQITALRSGVDIVIGTPGRLIDLI 319
             SPTRELA QI+           +++  +YGG    + Q+  LR+G  I+I TPGRLID+I
Sbjct:   229 SPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDII 288

Query:   320 EMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSK---ISLARQMVMFSATWPIEVHKL 376
             E     L+   ++VLDEADRMLDMGFE  +R I+ +      AR   MFSAT+P E+  L
Sbjct:   289 EQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVL 348

Query:   377 AEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFA 436
             A++++  N + + VG    + + ++ Q +  +++  +   L+ +L   H    N VLVF 
Sbjct:   349 AKDFLKDNYIFLAVGRVG-STSENIEQRLLWVNEMEKRSNLMEILMNEHSE--NLVLVFV 405

Query:   437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496
               +  A+ L   L R   + V+IHG   Q ER ++L LF+ G CP++VAT VAARGLDIP
Sbjct:   406 ETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIP 465

Query:   497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVP 556
             +V  VINY  P  +++YVHRIGRTGR G  G++ +FF + N+ +  +L N++ E+ Q VP
Sbjct:   466 NVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLIVESNQEVP 525

Query:   557 DAL 559
             + L
Sbjct:   526 EWL 528


>TAIR|locus:2074899 [details] [associations]
            symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
            RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
            SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
            GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
            GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
            PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
            GermOnline:AT3G09620 Uniprot:Q9SF41
        Length = 989

 Score = 479 (173.7 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
 Identities = 112/302 (37%), Positives = 180/302 (59%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             K+      + ++ +++E +  + V GKDV     + ++ + ++ L   +L   K  N++ 
Sbjct:   365 KDISRMTQDAVNAYRKELE--LKVHGKDVP----RPIQFWHQTGLTSKILDTLKKLNYEK 418

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVL 260
             P PIQ+ A P +++GRD IG+AKTGSGKT+ F +P + H+      +A G    P+ LV+
Sbjct:   419 PMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA-GD--GPIGLVM 475

Query:   261 SPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLI- 319
             +PTREL  QIY  +    K  G+  V VYGG+    QI+ L+ G +IV+ TPGR+ID++ 
Sbjct:   476 APTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 535

Query:   320 --EMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
                  + +L  V+++V+DEADRM DMGFE  +  I+  I   RQ V+FSAT+P +V  LA
Sbjct:   536 TSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLA 595

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFAL 437
              + ++  PV++ VG   +  N D+ Q+VE+  +  R  RLL LL +++  ++ +VLVF  
Sbjct:   596 RKVLN-KPVEIQVGGRSVV-NKDITQLVEIRPESERFSRLLELLGEWY--EKGKVLVFVR 651

Query:   438 YQ 439
              Q
Sbjct:   652 SQ 653

 Score = 235 (87.8 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
 Identities = 53/120 (44%), Positives = 73/120 (60%)

Query:   441 EADRLENMLRRSG-WKVVAIHGKKAQHERT--KSLSLFKEGTCPLMVATDVAARGLDIPD 497
             E++R   +L   G W      GK     R+  KS+S FK   C L++AT VAARGLD+ +
Sbjct:   626 ESERFSRLLELLGEWYE---KGKVLVFVRSQEKSISDFKSDVCNLLIATSVAARGLDVKE 682

Query:   498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPD 557
             +E+V+N+  P   EDYVHR+GRTGRAG+KG + TF +  +   A +LV  L  + Q VPD
Sbjct:   683 LELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPD 742


>ASPGD|ASPL0000077157 [details] [associations]
            symbol:AN10557 species:162425 "Emericella nidulans"
            [GO:0071470 "cellular response to osmotic stress" evidence=IEA]
            [GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
            [GO:0031137 "regulation of conjugation with cellular fusion"
            evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
            evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
            [GO:0010628 "positive regulation of gene expression" evidence=IEA]
            [GO:0097308 "cellular response to farnesol" evidence=IEP]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] [GO:0033592 "RNA strand annealing activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
            PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
        Length = 668

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 156/419 (37%), Positives = 231/419 (55%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLL 213
             F   DD  V  +G DV E     + +FT   L D ++       ++ P+P+Q ++ P ++
Sbjct:   166 FANYDDIPVEASGHDVPEP----VNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVM 221

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKG----KAVG-----KRVNPLCLVLSPTR 264
             NGRD +  A+TGSGKT  F  P +     N        A G     ++  P  L+L+PTR
Sbjct:   222 NGRDLMACAQTGSGKTGGFLFPILSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTR 281

Query:   265 ELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC 324
             EL  QI+D          V+   VYGG     Q+  +  G D+++ TPGRL+DLIE    
Sbjct:   282 ELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRI 341

Query:   325 HLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEY 380
              L  + +++LDEADRMLDMGFE  +R I+    +     RQ +MFSAT+P ++  LA ++
Sbjct:   342 SLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDF 401

Query:   381 MDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQL 440
             +  + V + VG    + + ++ Q VE ++D  +   LL +L  +  +     L+F   + 
Sbjct:   402 LK-DYVFLSVGRVG-STSENITQKVEYVEDHDKRSVLLDILHTHGTT--GLTLIFVETKR 457

Query:   441 EADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEV 500
              AD L   L    +   AIHG + Q ER ++L +F+ G  P++VAT VAARGLDIP+V  
Sbjct:   458 MADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTH 517

Query:   501 VINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDAL 559
             VINY  P   +DYVHRIGRTGRAG  G++  FF   N+ +  +L+++L+EA Q VP  L
Sbjct:   518 VINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLIDLLKEAHQEVPSFL 576


>RGD|1559513 [details] [associations]
            symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
            SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
            IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
            NextBio:667517 Uniprot:D4ADJ9
        Length = 621

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 160/391 (40%), Positives = 230/391 (58%)

Query:   179 LKSFTESKLPDDVL-GCCKN-FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             +KSF E KLP  +L G  K    +P+PIQ    P +L+GRD IGIA TGSGKT+ F +P 
Sbjct:   179 IKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 238

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN-------DAGKPCGVKSVCVY 289
             +M  L   K     KR  P  L++ P+RELA Q + +L        +   P    ++C+ 
Sbjct:   239 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCI- 297

Query:   290 GGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPV 349
             GG S + Q+  +R GV I++ TPGRL+DL++  +  L    ++ LDEADRM+DMGFE  +
Sbjct:   298 GGVSLKEQMETMRHGVHIMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDI 357

Query:   350 RFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD 409
             R I S     RQ ++FSAT P ++   A+  +   PV + VG    AA+ DV+Q VE + 
Sbjct:   358 RTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL-VKPVTINVGRAG-AASLDVIQEVEYVK 415

Query:   410 DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERT 469
             + ++   LL  L+K        VL+FA  + + D +   L   G + VAIHG K Q ERT
Sbjct:   416 EEAKMVYLLECLQKTPPP----VLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERT 471

Query:   470 KSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS 529
             K++  F+EG   ++VATDVA++GLD P ++ VINY  P   E+YVHRIGRTGR+G  G++
Sbjct:   472 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIA 531

Query:   530 HTFFTNH-NKALAGELVNVLREARQVVPDAL 559
              TF     ++++  +L  +L EA+Q VP  L
Sbjct:   532 TTFINKACDESVLMDLKALLLEAKQKVPPVL 562


>WB|WBGene00017162 [details] [associations]
            symbol:ddx-23 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
            genitalia development" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0042127 "regulation of cell proliferation"
            evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
            [GO:0010172 "embryonic body morphogenesis" evidence=IMP]
            [GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
            cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0040021 "hermaphrodite germ-line sex determination"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
            GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
            GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
            GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
            OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
            ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
            EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
            CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
            Uniprot:Q95QN2
        Length = 730

 Score = 381 (139.2 bits), Expect = 2.4e-66, Sum P(2) = 2.4e-66
 Identities = 88/214 (41%), Positives = 128/214 (59%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKN 200
             KE     D     F+E  D  + + G  V     + L+++ E+  PD+V    K   +  
Sbjct:   270 KELSEMSDRDWRIFRE--DFNISIKGGRVP----RPLRNWEEAGFPDEVYQAVKEIGYLE 323

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKR-VNPLCLV 259
             P+PIQ  A P  L  RD IG+A+TGSGKT AF +P ++ + S  K +    R + P  ++
Sbjct:   324 PTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAII 383

Query:   260 LSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLI 319
             ++PTRELA QI +  N  GK  G+K+V V GG S++ Q   LR GV++VI TPGRL+D++
Sbjct:   384 MAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVL 443

Query:   320 EMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFIL 353
             E     L++ ++V+LDEADRMLDMGFE  V+ +L
Sbjct:   444 ENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVL 477

 Score = 327 (120.2 bits), Expect = 2.4e-66, Sum P(2) = 2.4e-66
 Identities = 77/193 (39%), Positives = 113/193 (58%)

Query:   360 RQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVL-DDRSRDQRLL 418
             RQ VMF+AT    + +LA +Y+   P  V +GS        V Q+V ++ +DR R ++L+
Sbjct:   509 RQTVMFTATMSSAIERLARQYLR-RPAVVHIGSAGKPTER-VEQVVYMVPEDRKR-KKLV 565

Query:   419 ALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEG 478
              +LE   +     +++F   +  AD L   L + G+K   +HG K Q +R  +L   KEG
Sbjct:   566 EVLESQFQPP---IIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEG 622

Query:   479 TCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNK 538
             T  ++VATDVA RG+D+ DV +V+NY    + EDY HRIGRTGRAGK G + TF T  + 
Sbjct:   623 TSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDT 682

Query:   539 ALAGELVNVLREA 551
             A+  +L  VL E+
Sbjct:   683 AVYFDLKQVLVES 695


>RGD|1311758 [details] [associations]
            symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
            reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
            evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
            "defense response to virus" evidence=IEA;ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
            "nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
            RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
            Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
            UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
            Uniprot:B2RYL8
        Length = 622

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 159/391 (40%), Positives = 230/391 (58%)

Query:   179 LKSFTESKLPDDVL-GCCKN-FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             +KSF E KLP  +L G  K    +P+PIQ    P +L+GRD IGIA TGSGKT+ F +P 
Sbjct:   180 IKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN-------DAGKPCGVKSVCVY 289
             +M  L   K     KR  P  L++ P+RELA Q + +L        +   P    ++C+ 
Sbjct:   240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCI- 298

Query:   290 GGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPV 349
             GG S + Q+  +R GV +++ TPGRL+DL++  +  L    ++ LDEADRM+DMGFE  +
Sbjct:   299 GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDI 358

Query:   350 RFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD 409
             R I S     RQ ++FSAT P ++   A+  +   PV + VG    AA+ DV+Q VE + 
Sbjct:   359 RTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL-VKPVTINVGRAG-AASLDVIQEVEYVK 416

Query:   410 DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERT 469
             + ++   LL  L+K        VL+FA  + + D +   L   G + VAIHG K Q ERT
Sbjct:   417 EEAKMVYLLECLQKTPPP----VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERT 472

Query:   470 KSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS 529
             K++  F+EG   ++VATDVA++GLD P ++ VINY  P   E+YVHRIGRTGR+G  G++
Sbjct:   473 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIA 532

Query:   530 HTFFTNH-NKALAGELVNVLREARQVVPDAL 559
              TF     ++++  +L  +L EA+Q VP  L
Sbjct:   533 TTFINKACDESVLMDLKALLLEAKQKVPPVL 563


>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
            symbol:PFE0925c "snrnp protein, putative"
            species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
            HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
            ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
            GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
            ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
        Length = 1123

 Score = 380 (138.8 bits), Expect = 1.2e-65, Sum P(2) = 1.2e-65
 Identities = 89/216 (41%), Positives = 124/216 (57%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKN 200
             K  E   D     F+E  D ++ + G  V       ++ + ES L +D+L   K   ++ 
Sbjct:   667 KSREEMTDRDWRIFRE--DNEIYIKGGVVPPP----IRKWEESNLSNDLLKAIKKAKYEK 720

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVL 260
             P+PIQ  A P  L  RD IGIA+TGSGKT AF +P + +V           +  P  LV+
Sbjct:   721 PTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYETSQDGPYALVI 780

Query:   261 SPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIE 320
             +P+RELA QIY+  N     C  ++V V GG + + Q   LR GV+IVIGTPGRL D +E
Sbjct:   781 APSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCLE 840

Query:   321 MNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356
                  L++ ++V+LDEADRM+DMGFE+ V +IL KI
Sbjct:   841 KAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKI 876

 Score = 330 (121.2 bits), Expect = 1.2e-65, Sum P(2) = 1.2e-65
 Identities = 75/199 (37%), Positives = 111/199 (55%)

Query:   358 LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRL 417
             L R   MFSAT P  V +L+ +Y+   P  + +G    A    + Q +E L +  + Q+L
Sbjct:   902 LYRLTQMFSATMPPSVERLSRKYLRA-PAYISIGDPG-AGKRSIEQKLEFLTEGKKKQKL 959

Query:   418 LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE 477
               +LE Y       ++VF   +  AD +   + +  +K VA+HG KAQ  R ++LS FK 
Sbjct:   960 QEILEMYEPP----IIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKN 1015

Query:   478 GTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN 537
                 ++VATDVA RG+D+  V++VIN+  P   E Y HRIGRTGRAG KG++ +F T H+
Sbjct:  1016 AEFDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHD 1075

Query:   538 KALAGELVNVLREARQVVP 556
               L  +L   L  +  +VP
Sbjct:  1076 SHLFYDLKQFLISSNNIVP 1094


>UNIPROTKB|Q8I0W7 [details] [associations]
            symbol:PFE0925c "Snrnp protein, putative" species:36329
            "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
            InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
            HOGENOM:HOG000268796 RefSeq:XP_001351742.1
            ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
            GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
            ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
        Length = 1123

 Score = 380 (138.8 bits), Expect = 1.2e-65, Sum P(2) = 1.2e-65
 Identities = 89/216 (41%), Positives = 124/216 (57%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKN 200
             K  E   D     F+E  D ++ + G  V       ++ + ES L +D+L   K   ++ 
Sbjct:   667 KSREEMTDRDWRIFRE--DNEIYIKGGVVPPP----IRKWEESNLSNDLLKAIKKAKYEK 720

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVL 260
             P+PIQ  A P  L  RD IGIA+TGSGKT AF +P + +V           +  P  LV+
Sbjct:   721 PTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYETSQDGPYALVI 780

Query:   261 SPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIE 320
             +P+RELA QIY+  N     C  ++V V GG + + Q   LR GV+IVIGTPGRL D +E
Sbjct:   781 APSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCLE 840

Query:   321 MNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356
                  L++ ++V+LDEADRM+DMGFE+ V +IL KI
Sbjct:   841 KAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKI 876

 Score = 330 (121.2 bits), Expect = 1.2e-65, Sum P(2) = 1.2e-65
 Identities = 75/199 (37%), Positives = 111/199 (55%)

Query:   358 LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRL 417
             L R   MFSAT P  V +L+ +Y+   P  + +G    A    + Q +E L +  + Q+L
Sbjct:   902 LYRLTQMFSATMPPSVERLSRKYLRA-PAYISIGDPG-AGKRSIEQKLEFLTEGKKKQKL 959

Query:   418 LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE 477
               +LE Y       ++VF   +  AD +   + +  +K VA+HG KAQ  R ++LS FK 
Sbjct:   960 QEILEMYEPP----IIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKN 1015

Query:   478 GTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN 537
                 ++VATDVA RG+D+  V++VIN+  P   E Y HRIGRTGRAG KG++ +F T H+
Sbjct:  1016 AEFDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHD 1075

Query:   538 KALAGELVNVLREARQVVP 556
               L  +L   L  +  +VP
Sbjct:  1076 SHLFYDLKQFLISSNNIVP 1094


>UNIPROTKB|P25888 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
            GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
            PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
            ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
            MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
            EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
            KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
            EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
            BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
            Genevestigator:P25888 Uniprot:P25888
        Length = 454

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 149/350 (42%), Positives = 218/350 (62%)

Query:   181 SFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMM 238
             SF    L  D+L     + ++ P+PIQ  A P +L GRD +  A+TG+GKT  F +P + 
Sbjct:     2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61

Query:   239 HVLSNRKGKAVGKRVNPL-CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQ 297
             H+++ R+  A G+R  P+  L+L+PTRELA QI + + D  K   ++S+ V+GG S  PQ
Sbjct:    62 HLIT-RQPHAKGRR--PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQ 118

Query:   298 ITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357
             +  LR GVD+++ TPGRL+DL   N   L +V  +VLDEADRMLDMGF   +R +L+K+ 
Sbjct:   119 MMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLP 178

Query:   358 LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRL 417
               RQ ++FSAT+  ++  LAE+ +  NP+++ V   + A++  V Q V  +D + R + L
Sbjct:   179 AKRQNLLFSATFSDDIKALAEKLLH-NPLEIEVARRNTASDQ-VTQHVHFVD-KKRKREL 235

Query:   418 LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE 477
             L+ +    K    +VLVF   +  A+ L   L + G +  AIHG K+Q  RT++L+ FK 
Sbjct:   236 LSHM--IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS 293

Query:   478 GTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKG 527
             G   ++VATD+AARGLDI ++  V+NY  P   EDYVHRIGRTGRA   G
Sbjct:   294 GDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATG 343


>UNIPROTKB|A3KN07 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0035458 "cellular response to
            interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
            KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
            RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
            Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
            InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
        Length = 622

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 158/391 (40%), Positives = 229/391 (58%)

Query:   179 LKSFTESKLPDDVL-GCCKN-FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             +KSF E K P  +L G  K    +P+PIQ    P +L+GRD IGIA TGSGKT+ F +P 
Sbjct:   180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN-------DAGKPCGVKSVCVY 289
             +M  L   K     KR  P  L++ P+RELA Q + +L        +   P    ++C+ 
Sbjct:   240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCI- 298

Query:   290 GGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPV 349
             GG S + Q+  +R GV +++ TPGRL+DL++  +  L    ++ LDEADRM+DMGFE  +
Sbjct:   299 GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDI 358

Query:   350 RFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD 409
             R I S     RQ ++FSAT P ++   A+  +   PV + VG    AA+ DV+Q VE + 
Sbjct:   359 RTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL-VKPVTINVGRAG-AASLDVIQEVEYVK 416

Query:   410 DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERT 469
             + ++   LL  L+K        VL+FA  + + D +   L   G + VAIHG K Q ERT
Sbjct:   417 EEAKMVYLLECLQKTPPP----VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERT 472

Query:   470 KSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS 529
             K++  F+EG   ++VATDVA++GLD P ++ VINY  P   E+YVHRIGRTGR+G  G++
Sbjct:   473 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIA 532

Query:   530 HTFFTNH-NKALAGELVNVLREARQVVPDAL 559
              TF     ++++  +L  +L EA+Q VP  L
Sbjct:   533 TTFINKACDESVLMDLKALLLEAKQKVPPVL 563


>UNIPROTKB|E2R052 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
            response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
            reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
            RefSeq:XP_536417.2 ProteinModelPortal:E2R052
            Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
            NextBio:20854482 Uniprot:E2R052
        Length = 622

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 158/391 (40%), Positives = 229/391 (58%)

Query:   179 LKSFTESKLPDDVL-GCCKN-FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             +KSF E K P  +L G  K    +P+PIQ    P +L+GRD IGIA TGSGKT+ F +P 
Sbjct:   180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN-------DAGKPCGVKSVCVY 289
             +M  L   K     KR  P  L++ P+RELA Q + +L        +   P    ++C+ 
Sbjct:   240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCI- 298

Query:   290 GGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPV 349
             GG S + Q+  +R GV +++ TPGRL+DL++  +  L    ++ LDEADRM+DMGFE  +
Sbjct:   299 GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDI 358

Query:   350 RFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD 409
             R I S     RQ ++FSAT P ++   A+  +   PV + VG    AA+ DV+Q VE + 
Sbjct:   359 RTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL-VKPVTINVGRAG-AASLDVIQEVEYVK 416

Query:   410 DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERT 469
             + ++   LL  L+K        VL+FA  + + D +   L   G + VAIHG K Q ERT
Sbjct:   417 EEAKMVYLLECLQKTPPP----VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERT 472

Query:   470 KSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS 529
             K++  F+EG   ++VATDVA++GLD P ++ VINY  P   E+YVHRIGRTGR+G  G++
Sbjct:   473 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIA 532

Query:   530 HTFFTNH-NKALAGELVNVLREARQVVPDAL 559
              TF     ++++  +L  +L EA+Q VP  L
Sbjct:   533 TTFINKACDESVLMDLKALLLEAKQKVPPVL 563


>UNIPROTKB|J9NZF6 [details] [associations]
            symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
            GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
            Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
        Length = 649

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 158/391 (40%), Positives = 229/391 (58%)

Query:   179 LKSFTESKLPDDVL-GCCKN-FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             +KSF E K P  +L G  K    +P+PIQ    P +L+GRD IGIA TGSGKT+ F +P 
Sbjct:   207 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 266

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN-------DAGKPCGVKSVCVY 289
             +M  L   K     KR  P  L++ P+RELA Q + +L        +   P    ++C+ 
Sbjct:   267 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCI- 325

Query:   290 GGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPV 349
             GG S + Q+  +R GV +++ TPGRL+DL++  +  L    ++ LDEADRM+DMGFE  +
Sbjct:   326 GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDI 385

Query:   350 RFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD 409
             R I S     RQ ++FSAT P ++   A+  +   PV + VG    AA+ DV+Q VE + 
Sbjct:   386 RTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL-VKPVTINVGRAG-AASLDVIQEVEYVK 443

Query:   410 DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERT 469
             + ++   LL  L+K        VL+FA  + + D +   L   G + VAIHG K Q ERT
Sbjct:   444 EEAKMVYLLECLQKTPPP----VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERT 499

Query:   470 KSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS 529
             K++  F+EG   ++VATDVA++GLD P ++ VINY  P   E+YVHRIGRTGR+G  G++
Sbjct:   500 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIA 559

Query:   530 HTFFTNH-NKALAGELVNVLREARQVVPDAL 559
              TF     ++++  +L  +L EA+Q VP  L
Sbjct:   560 TTFINKACDESVLMDLKALLLEAKQKVPPVL 590


>UNIPROTKB|J3KNN5 [details] [associations]
            symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
            GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
            Ensembl:ENST00000330503 Uniprot:J3KNN5
        Length = 640

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 158/391 (40%), Positives = 229/391 (58%)

Query:   179 LKSFTESKLPDDVL-GCCKN-FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             +KSF E K P  +L G  K    +P+PIQ    P +L+GRD IGIA TGSGKT+ F +P 
Sbjct:   198 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 257

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN-------DAGKPCGVKSVCVY 289
             +M  L   K     KR  P  L++ P+RELA Q + +L        +   P    ++C+ 
Sbjct:   258 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCI- 316

Query:   290 GGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPV 349
             GG S + Q+  +R GV +++ TPGRL+DL++  +  L    ++ LDEADRM+DMGFE  +
Sbjct:   317 GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDI 376

Query:   350 RFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD 409
             R I S     RQ ++FSAT P ++   A+  +   PV + VG    AA+ DV+Q VE + 
Sbjct:   377 RTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL-VKPVTINVGRAG-AASLDVIQEVEYVK 434

Query:   410 DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERT 469
             + ++   LL  L+K        VL+FA  + + D +   L   G + VAIHG K Q ERT
Sbjct:   435 EEAKMVYLLECLQKTPPP----VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERT 490

Query:   470 KSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS 529
             K++  F+EG   ++VATDVA++GLD P ++ VINY  P   E+YVHRIGRTGR+G  G++
Sbjct:   491 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIA 550

Query:   530 HTFFTNH-NKALAGELVNVLREARQVVPDAL 559
              TF     ++++  +L  +L EA+Q VP  L
Sbjct:   551 TTFINKACDESVLMDLKALLLEAKQKVPPVL 581


>UNIPROTKB|Q9UJV9 [details] [associations]
            symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
            "cellular response to interferon-beta" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0051607 "defense response to virus"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0007275 "multicellular organismal development"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
            GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
            GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
            EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
            EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
            UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
            SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
            PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
            PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
            KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
            HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
            PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
            OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
            EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
            ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
            Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
        Length = 622

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 158/391 (40%), Positives = 229/391 (58%)

Query:   179 LKSFTESKLPDDVL-GCCKN-FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             +KSF E K P  +L G  K    +P+PIQ    P +L+GRD IGIA TGSGKT+ F +P 
Sbjct:   180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN-------DAGKPCGVKSVCVY 289
             +M  L   K     KR  P  L++ P+RELA Q + +L        +   P    ++C+ 
Sbjct:   240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCI- 298

Query:   290 GGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPV 349
             GG S + Q+  +R GV +++ TPGRL+DL++  +  L    ++ LDEADRM+DMGFE  +
Sbjct:   299 GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDI 358

Query:   350 RFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD 409
             R I S     RQ ++FSAT P ++   A+  +   PV + VG    AA+ DV+Q VE + 
Sbjct:   359 RTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL-VKPVTINVGRAG-AASLDVIQEVEYVK 416

Query:   410 DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERT 469
             + ++   LL  L+K        VL+FA  + + D +   L   G + VAIHG K Q ERT
Sbjct:   417 EEAKMVYLLECLQKTPPP----VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERT 472

Query:   470 KSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS 529
             K++  F+EG   ++VATDVA++GLD P ++ VINY  P   E+YVHRIGRTGR+G  G++
Sbjct:   473 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIA 532

Query:   530 HTFFTNH-NKALAGELVNVLREARQVVPDAL 559
              TF     ++++  +L  +L EA+Q VP  L
Sbjct:   533 TTFINKACDESVLMDLKALLLEAKQKVPPVL 563


>MGI|MGI:1920185 [details] [associations]
            symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
            "endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0035458 "cellular response to
            interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
            response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
            GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
            GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
            KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
            OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
            RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
            SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
            PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
            KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
            CleanEx:MM_DDX41 Genevestigator:Q91VN6
            GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
        Length = 622

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 158/391 (40%), Positives = 229/391 (58%)

Query:   179 LKSFTESKLPDDVL-GCCKN-FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             +KSF E K P  +L G  K    +P+PIQ    P +L+GRD IGIA TGSGKT+ F +P 
Sbjct:   180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN-------DAGKPCGVKSVCVY 289
             +M  L   K     KR  P  L++ P+RELA Q + +L        +   P    ++C+ 
Sbjct:   240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCI- 298

Query:   290 GGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPV 349
             GG S + Q+  +R GV +++ TPGRL+DL++  +  L    ++ LDEADRM+DMGFE  +
Sbjct:   299 GGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDI 358

Query:   350 RFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD 409
             R I S     RQ ++FSAT P ++   A+  +   PV + VG    AA+ DV+Q VE + 
Sbjct:   359 RTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL-VKPVTINVGRAG-AASLDVIQEVEYVK 416

Query:   410 DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERT 469
             + ++   LL  L+K        VL+FA  + + D +   L   G + VAIHG K Q ERT
Sbjct:   417 EEAKMVYLLECLQKTPPP----VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERT 472

Query:   470 KSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS 529
             K++  F+EG   ++VATDVA++GLD P ++ VINY  P   E+YVHRIGRTGR+G  G++
Sbjct:   473 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIA 532

Query:   530 HTFFTNH-NKALAGELVNVLREARQVVPDAL 559
              TF     ++++  +L  +L EA+Q VP  L
Sbjct:   533 TTFINKACDESVLMDLKALLLEAKQKVPPVL 563


>SGD|S000006040 [details] [associations]
            symbol:DBP1 "Putative ATP-dependent RNA helicase of the
            DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
            [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
            "translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
            helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
            "translation initiation factor activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
            SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
            STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
            KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
            HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
            NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
            Uniprot:P24784
        Length = 617

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 160/417 (38%), Positives = 234/417 (56%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLL 213
             F   D+  V  +GKDV E     +  F+   L + ++   K  +F  P+P+Q ++ P + 
Sbjct:   134 FDNYDNIPVDASGKDVPEP----ILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVT 189

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSN------RKGKAVGKRVN-PLCLVLSPTREL 266
              GRD +  A+TGSGKT  F  P    +  +       K ++   R   P  LVL+PTREL
Sbjct:   190 KGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTREL 249

Query:   267 ADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHL 326
             A QI++          V+   VYGG     Q+  +  G D+++ TPGRL DL+E     L
Sbjct:   250 ATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSL 309

Query:   327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMD 382
             + + ++VLDEADRMLDMGFE  +R I+ +  +     RQ +MFSAT+P+++  LA +++D
Sbjct:   310 ANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLD 369

Query:   383 PNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEA 442
              N + + VG    + + ++ Q +  +DD  +   LL LL   HK      L+F   +  A
Sbjct:   370 -NYIFLSVGRVG-STSENITQRILYVDDMDKKSALLDLLSAEHKGL---TLIFVETKRMA 424

Query:   443 DRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVI 502
             D+L + L    +K  AIHG + Q ER ++LS FK     ++VAT VAARGLDIP+V  VI
Sbjct:   425 DQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVI 484

Query:   503 NYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDAL 559
             NY  P   +DYVHRIGRTGRAG  GV+ +FF ++N+ +   L+ +L EA Q VP  L
Sbjct:   485 NYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQEVPTFL 541


>CGD|CAL0004832 [details] [associations]
            symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
            "cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
            evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
            [GO:0071470 "cellular response to osmotic stress" evidence=IEA]
            [GO:0031137 "regulation of conjugation with cellular fusion"
            evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
            evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
            ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
            KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
        Length = 672

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 159/420 (37%), Positives = 231/420 (55%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG---CCKNFKNPSPIQSHAWPFL 212
             F   DD  V  +G  V E     + SFT   L D++L        F  P+P+Q ++ P +
Sbjct:   166 FDNYDDIPVEASGDKVPEP----ITSFTAPPL-DELLVENIQLSRFTKPTPVQKYSVPIV 220

Query:   213 LNGRDFIGIAKTGSGKTIAFGVPAMMHV-------LSNRKGKAVGKRVNPLCLVLSPTRE 265
               GRD +  A+TGSGKT  F  P +          +    G     +V P  LV++PTRE
Sbjct:   221 AAGRDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHKVYPTILVMAPTRE 280

Query:   266 LADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCH 325
             L  QIY+          V++  VYGG     Q+  +  G D+++ TPGRL DL++     
Sbjct:   281 LVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKVS 340

Query:   326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYM 381
             L+ + ++VLDEADRMLDMGFE  +R+I+ +  +     RQ +MFSAT+P ++  LA +++
Sbjct:   341 LANIRYLVLDEADRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSATFPRDIQMLARDFL 400

Query:   382 DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLE 441
               + V + VG     + +   +I+ V DD  +      +L+    ++    +VF   +  
Sbjct:   401 K-DYVFLSVGRVGSTSENITQKILYVEDDEKKS----VILDLLSANENGLTIVFTETKRM 455

Query:   442 ADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVV 501
             AD L + L   G+   AIHG ++Q+ER K+L+ FK G  P++VAT VAARGLDIP+V  V
Sbjct:   456 ADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVSHV 515

Query:   502 INYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLK 561
             INY  P   +DYVHRIGRTGRAG  G++  FF  +NK +   L+ +L EA Q VPD L K
Sbjct:   516 INYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVKGLIELLSEANQEVPDFLTK 575


>DICTYBASE|DDB_G0293064 [details] [associations]
            symbol:DDB_G0293064 species:44689 "Dictyostelium
            discoideum" [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
            RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
            EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
            InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
        Length = 573

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 144/373 (38%), Positives = 226/373 (60%)

Query:   196 KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSN-RKGKAVGKRVN 254
             K F+ P+P+QS  WP  L+G D +GI+KTGSGKT++F +PA+ H+L+  R+    G    
Sbjct:   157 KKFEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHILAQPRQSYYPG---- 212

Query:   255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGR 314
             P  LV++PTRELA+QI        +   ++   +YGG  ++ Q   L     IV+GTPGR
Sbjct:   213 PSVLVVAPTRELANQINQEAEQYLRLVNIEIATIYGGAPRRSQQLQLSRRPKIVVGTPGR 272

Query:   315 LIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVH 374
             +ID +E     L  +SF+V+DEADR+++MGFE+ +  I + I   RQ++ +SATWP +V 
Sbjct:   273 IIDFMESGDLSLKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPDRQVLYWSATWPKKVS 332

Query:   375 KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD-DRSRDQRLLALL-EKYHKSQRNRV 432
               AE+++   P+++ +GS  L AN ++ Q  +++  D  +   L+  L E Y   ++ + 
Sbjct:   333 SFAEKHIR-TPIRLQIGSSQLTANKNISQKFKIVPTDADKVDALMDTLGEIYSADEKAQT 391

Query:   433 LVFALYQLEADRLENMLRRSG--WKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAA 490
             L+F + +  AD L++ ++ +G   ++  +HG   Q+ R + +  FK     ++VATDVA+
Sbjct:   392 LIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATDVAS 451

Query:   491 RGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN---KALAGELVNV 547
             RGLDI  +  VIN+S P   E YVHRIGRTGRAG  G SH+  +N++     L G+L N+
Sbjct:   452 RGLDIKGISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNNSLDDMELVGDLTNL 511

Query:   548 LREARQVVPDALL 560
             L+ + Q VP   L
Sbjct:   512 LQRSEQEVPSEFL 524


>TAIR|locus:2119176 [details] [associations]
            symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
            SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
            IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
            ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
            EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
            GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
            PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
            Uniprot:Q9SZB4
        Length = 542

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 156/418 (37%), Positives = 238/418 (56%)

Query:   164 VVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGI 221
             + V G+D+       +K+F + K P  +L   K+    +P+PIQ    P +L+GRD IGI
Sbjct:    85 ITVNGEDIPPP----IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGI 140

Query:   222 AKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN------ 275
             A TGSGKT+ F +P ++  L       +     P+ LV+ P+RELA Q YDV+       
Sbjct:   141 AFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASL 200

Query:   276 -DAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVL 334
              + G P  ++S+   GG   + Q+  ++ GV IV+ TPGRL D++      L     + L
Sbjct:   201 VEDGYP-RLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTL 259

Query:   335 DEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSED 394
             DEADR++D+GFE+ +R +       RQ ++FSAT P ++   A   +   PV V VG   
Sbjct:   260 DEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSAL-VKPVTVNVGRAG 318

Query:   395 LAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGW 454
              AAN DV+Q VE +    ++ +++ LLE   K+    VL+F   + + D +   L   G 
Sbjct:   319 -AANLDVIQEVEYV---KQEAKIVYLLECLQKTTPP-VLIFCENKADVDDIHEYLLLKGV 373

Query:   455 KVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYV 514
             + VAIHG K Q +R  ++SLFK G   ++VATDVA++GLD PD++ VINY  P   E+YV
Sbjct:   374 EAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYV 433

Query:   515 HRIGRTGRAGKKGVSHTFFT-NHNKALAGELVNVLREARQVVPDALLKFGTHVKKKES 571
             HRIGRTGR GK G++ TF   N ++    +L ++L+EA+Q +P  L +    +++ E+
Sbjct:   434 HRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETET 491


>TAIR|locus:2176192 [details] [associations]
            symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
            evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
            GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
            OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
            RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
            SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
            EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
            GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
            ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
            Uniprot:Q9LU46
        Length = 591

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 156/418 (37%), Positives = 236/418 (56%)

Query:   164 VVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGI 221
             ++V G D+       +K+F + K P  VL   K      P+PIQ    P +L GRD IGI
Sbjct:   134 IIVNGDDIPPP----IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGI 189

Query:   222 AKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN------ 275
             A TGSGKT+ F +P +M  L       +     P+ L++ P+RELA Q Y+V+       
Sbjct:   190 AFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPL 249

Query:   276 -DAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVL 334
              +AG P  ++S+   GG   + Q+  ++ GV IV+ TPGRL D++      L    ++ L
Sbjct:   250 VEAGYP-PLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTL 308

Query:   335 DEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSED 394
             DEADR++D+GFE+ +R +       RQ ++FSAT P ++   A   +   PV V VG   
Sbjct:   309 DEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSAL-VKPVTVNVGRAG 367

Query:   395 LAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGW 454
              AAN DV+Q VE +    ++ +++ LLE   K+    VL+F   + + D +   L   G 
Sbjct:   368 -AANLDVIQEVEYV---KQEAKIVYLLECLQKTSPP-VLIFCENKADVDDIHEYLLLKGV 422

Query:   455 KVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYV 514
             + VAIHG K Q +R  ++S FK G   ++VATDVA++GLD PD++ VINY  P   E+YV
Sbjct:   423 EAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYV 482

Query:   515 HRIGRTGRAGKKGVSHTFFT-NHNKALAGELVNVLREARQVVPDALLKFGTHVKKKES 571
             HRIGRTGR GK G++ TF   N ++    +L ++L+EA+Q +P  L +    +++ E+
Sbjct:   483 HRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAET 540


>FB|FBgn0263231 [details] [associations]
            symbol:bel "belle" species:7227 "Drosophila melanogaster"
            [GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
            "spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
            development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
            [GO:0016442 "RNA-induced silencing complex" evidence=IDA]
            [GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
            particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005875 "microtubule associated complex" evidence=IDA]
            [GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
            "regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
            sister chromatid segregation" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
            GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
            GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
            GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
            GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
            RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
            SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
            EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
            UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
            OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
            NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
        Length = 798

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 158/421 (37%), Positives = 236/421 (56%)

Query:   153 ISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG--CCKNFKNPSPIQSHAWP 210
             I+F K ED   V  TG++V       + SF + +L + +        +  P+P+Q HA P
Sbjct:   273 INFDKYEDI-PVEATGQNVPPN----ITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIP 327

Query:   211 FLLNGRDFIGIAKTGSGKTIAFGVPAMM------HVLSNRKGKAVGKRVN-PLCLVLSPT 263
              ++NGRD +  A+TGSGKT AF VP +       HV   +  +   +R   PL LVL+PT
Sbjct:   328 IIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPT 387

Query:   264 RELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNV 323
             RELA QI++          ++   +YGG +   Q+  L  G  +++ TPGRL D+I    
Sbjct:   388 RELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGK 447

Query:   324 CHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEE 379
               L  + F+VLDEADRMLDMGFE  +R I+ ++++     RQ +MFSAT+P ++ +LA +
Sbjct:   448 VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASD 507

Query:   380 YMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK----SQRNRVLVF 435
             ++  N + + VG     + +    I+ V +   R   LL LL         ++ +  L+F
Sbjct:   508 FLS-NYIFLAVGRVGSTSENITQTILWVYEPDKRSY-LLDLLSSIRDGPEYTKDSLTLIF 565

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                +  AD LE  L +    V +IHG + Q ER ++L  F+ G CP++VAT VAARGLDI
Sbjct:   566 VETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDI 625

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVV 555
             P V+ VIN+  P   E+YVHRIGRTGR G  GV+ +FF   N+ +  +L+ +L E +Q +
Sbjct:   626 PHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLELLIETKQEI 685

Query:   556 P 556
             P
Sbjct:   686 P 686


>UNIPROTKB|F1NAH6 [details] [associations]
            symbol:LOC100859810 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
            [GO:0035458 "cellular response to interferon-beta" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
            to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
            GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
            EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
            Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
        Length = 607

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 155/392 (39%), Positives = 230/392 (58%)

Query:   179 LKSFTESKLPDDVL-GCCKN-FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             +KSF E K P  +L G  K   + P+PIQ    P +L+GRD IGIA TGSGKT+ F +P 
Sbjct:   176 IKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 235

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN--------DAGKPCGVKSVCV 288
             +M  L   K     KR  P  L++ P+RELA Q + ++         D+  P    ++C+
Sbjct:   236 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRC-ALCI 294

Query:   289 YGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEP 348
              GG S + Q+  ++ GV +++ TPGRL+DL++  +  L    ++ LDEADRM+DMGFE  
Sbjct:   295 -GGMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGD 353

Query:   349 VRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVL 408
             +R I S     RQ ++FSAT P ++   A+  +   P+ + VG    AA+ DV+Q VE +
Sbjct:   354 IRTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL-VKPITINVGRAG-AASLDVVQEVEYV 411

Query:   409 DDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHER 468
              + ++   LL  L+K        VL+FA  + + D +   L   G + VAIHG K Q ER
Sbjct:   412 KEEAKMVYLLECLQKTPPP----VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEER 467

Query:   469 TKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGV 528
             TK++  F++G   ++VATDVA++GLD P ++ VINY  P   E+YVHRIGRTGR+G  G+
Sbjct:   468 TKAIEAFRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGI 527

Query:   529 SHTFFTNH-NKALAGELVNVLREARQVVPDAL 559
             + TF     ++++  +L  +L EA+Q VP  L
Sbjct:   528 ATTFINKACDESVLMDLKALLLEAKQKVPPVL 559


>UNIPROTKB|E2RRQ7 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
            Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
        Length = 706

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 161/443 (36%), Positives = 251/443 (56%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V  TG +        ++SF++ ++ + ++G  +   +  
Sbjct:   190 QELFSGGNTGINFEKY-DDIPVEATGNNCPPH----IESFSDVEMGEIIMGNIELTRYTR 244

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV---------GK 251
             P+P+Q HA P +   RD +  A+TGSGKT AF +P +  + S+  G+A+         G+
Sbjct:   245 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGR 304

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIY+          V+   VYGG     QI  L  G  +++ 
Sbjct:   305 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVA 364

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFS 366
             TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MFS
Sbjct:   365 TPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFS 424

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK 426
             AT+P E+  LA +++D   + + VG    + + ++ Q V  +++  +   LL LL     
Sbjct:   425 ATFPKEIQMLARDFLDEY-IFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATES 482

Query:   427 SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486
              + +  LVF   +  AD LE+ L   G+   +IHG ++Q +R ++L  F+ G  P++VAT
Sbjct:   483 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 542

Query:   487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546
              VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G++ +FF   N  +  +L++
Sbjct:   543 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 602

Query:   547 VLREARQVVPDAL--LKFGTHVK 567
             +L EA+Q VP  L  + +  H K
Sbjct:   603 LLVEAKQEVPSWLENMAYEHHYK 625


>WB|WBGene00002244 [details] [associations]
            symbol:laf-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
            "masculinization of hermaphroditic germ-line" evidence=IMP]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
            GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
            HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
            EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
            ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
            KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
            ArrayExpress:D0PV95 Uniprot:D0PV95
        Length = 708

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 169/432 (39%), Positives = 248/432 (57%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKN 200
             +E  +G    I+F K E+   V  TG DV +     +  F++  L + +    K   +  
Sbjct:   199 QELFSGQLSGINFDKYEEI-PVEATGDDVPQP----ISLFSDLSLHEWIEENIKTAGYDR 253

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSN------RKGKAVG--KR 252
             P+P+Q ++ P L  GRD +  A+TGSGKT AF VP +  +L +      R   + G  K+
Sbjct:   254 PTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKK 313

Query:   253 VNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK-QPQITALRSGVDIVIGT 311
               P  LVLSPTREL+ QI++          + S  +YGG    + QI  LR G  I+I T
Sbjct:   314 QYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILIAT 373

Query:   312 PGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFIL--SKISLARQMV--MFSA 367
             PGRLID+++  +  +    ++VLDEADRMLDMGFE  +R I+  +++    + +  MFSA
Sbjct:   374 PGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSA 433

Query:   368 TWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKS 427
             T+P E+  LA++++  N V + VG     + + + +IV V +D  R   L+ LL+    S
Sbjct:   434 TFPKEIQLLAQDFLKENYVFLAVGRVGSTSENIMQKIVWVEEDEKRSY-LMDLLDATGDS 492

Query:   428 QRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD 487
               +  LVF   +  A  L   L R  ++VV IHG   Q ER K L LF+ GT P++VAT 
Sbjct:   493 --SLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATA 550

Query:   488 VAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNV 547
             VAARGLDIP+V+ VINY  P   ++YVHRIGRTGR G  G++ +FF + N+ +A EL+++
Sbjct:   551 VAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELMDL 610

Query:   548 LREARQVVPDAL 559
             + EA Q +PD L
Sbjct:   611 IVEANQELPDWL 622


>SGD|S000005730 [details] [associations]
            symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
            helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
            "translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
            [GO:0033592 "RNA strand annealing activity" evidence=IDA]
            [GO:0003743 "translation initiation factor activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
            EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
            EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
            RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
            DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
            PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
            GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
            KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
            GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
        Length = 604

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 160/429 (37%), Positives = 232/429 (54%)

Query:   144 ESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKNP 201
             E  N     I+F    DD  V  +GKDV E     +  FT   L   +L   K   F  P
Sbjct:   111 EDPNFQSSGINF-DNYDDIPVDASGKDVPEP----ITEFTSPPLDGLLLENIKLARFTKP 165

Query:   202 SPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSN-------RKGKAVGKRVN 254
             +P+Q ++ P + NGRD +  A+TGSGKT  F  P +              +G    ++  
Sbjct:   166 TPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAY 225

Query:   255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGR 314
             P  ++++PTRELA QI+D          VK+  VYGG+    Q+  +  G D+++ TPGR
Sbjct:   226 PTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGR 285

Query:   315 LIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWP 370
             L DL+E     L+ V ++VLDEADRMLDMGFE  +R I+    +     RQ +MFSAT+P
Sbjct:   286 LNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFP 345

Query:   371 IEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRN 430
              ++  LA +++  + + + VG    + + ++ Q V  ++++ +   LL LL     S   
Sbjct:   346 ADIQHLARDFLS-DYIFLSVGRVG-STSENITQKVLYVENQDKKSALLDLLSA---STDG 400

Query:   431 RVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAA 490
               L+F   +  AD+L + L    ++  AIHG + Q ER ++L+ F+ G   L+VAT VAA
Sbjct:   401 LTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAA 460

Query:   491 RGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLRE 550
             RGLDIP+V  VINY  P   +DYVHRIGRTGRAG  G++  FF + N  +   L  +L E
Sbjct:   461 RGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTE 520

Query:   551 ARQVVPDAL 559
             A Q VP  L
Sbjct:   521 ANQEVPSFL 529


>ZFIN|ZDB-GENE-980526-150 [details] [associations]
            symbol:pl10 "pl10" species:7955 "Danio rerio"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
            EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
            ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
            CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
            Uniprot:Q6PBB2
        Length = 688

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 163/447 (36%), Positives = 253/447 (56%)

Query:   147 NGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKNPSPI 204
             +G +  I+F K  DD  V  TG +  +     +  F + ++ + ++G      +  P+P+
Sbjct:   180 SGSNTGINFEKY-DDIPVEATGHNGPQP----IDRFHDLEMGEIIMGNINLSRYTRPTPV 234

Query:   205 QSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV-------------GK 251
             Q HA P + + RD +  A+TGSGKT AF +P +  + ++  G+A+             G+
Sbjct:   235 QKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGEALQAAKNSAQENGKYGR 294

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIYD          V+   VYGG     QI  L  G  +++ 
Sbjct:   295 RKQYPISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERGCHLLVA 354

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFS 366
             TPGRL+D++E     L   +++VLDEADRMLDMGFE  +R I+ + ++     RQ +MFS
Sbjct:   355 TPGRLLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGLRQTMMFS 414

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK 426
             AT+P E+  LA ++++ + + + VG    + + ++ Q V  +++  +   LL LL    K
Sbjct:   415 ATFPKEIQILARDFLE-DYIFLAVGRVG-STSENITQKVVWVEENDKRSFLLDLLNATGK 472

Query:   427 SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486
                +  LVF   +  AD LE+ L R G+   +IHG ++Q +R ++L  F+ G CP++VAT
Sbjct:   473 D--SLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVAT 530

Query:   487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546
              VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G++ +FF + N  +  +L++
Sbjct:   531 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLD 590

Query:   547 VLREARQVVPDALLKFG-THVKKKESK 572
             +L EA+Q VP  L      H  K  S+
Sbjct:   591 ILVEAKQEVPSWLESLAYEHQHKSSSR 617


>DICTYBASE|DDB_G0288501 [details] [associations]
            symbol:ddx42 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
            GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
            KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
            STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
            KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
        Length = 986

 Score = 660 (237.4 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 151/375 (40%), Positives = 222/375 (59%)

Query:   189 DDVL--GCCK-NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRK 245
             DD+L     K + + P+PIQ  A P  L+GRD I IAKTGSGKT  F  P++ H++    
Sbjct:   313 DDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQ-- 370

Query:   246 GKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGV 305
                + K   P+ L L+PTRELA QIY       K   +K+  +YGG SKQ Q   L++G 
Sbjct:   371 -PYLEKGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGC 429

Query:   306 DIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMF 365
             +I++ TPGRLID+I++    L+ VS++VLDEAD+M D GF   V  I++ +   RQ ++F
Sbjct:   430 EIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLF 489

Query:   366 SATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYH 425
             SAT+   V + A   +  +P+K+ +G    +AN D+ QIV+VL   S     L       
Sbjct:   490 SATFKPNVEEFARTILS-DPIKISIGMIG-SANSDITQIVQVLKSDSDKWNWLTNQLALL 547

Query:   426 KSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVA 485
              SQ + VL+F   ++  ++L + L + G++   +HG K Q ER++++  FKEG   +++A
Sbjct:   548 LSQGS-VLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIA 606

Query:   486 TDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELV 545
             TDVAARGLDIP ++ V+NY      E + HRIGRTGRAG  GV++T  T  +   + +L+
Sbjct:   607 TDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVDLI 666

Query:   546 NVLREARQVVPDALL 560
               L  A Q VP  L+
Sbjct:   667 KNLESASQFVPPELI 681


>MGI|MGI:91842 [details] [associations]
            symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
            GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
            GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
            KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
            IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
            ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
            PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
            Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
            InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
            Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
            GermOnline:ENSMUSG00000039224 Uniprot:P16381
        Length = 660

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 162/443 (36%), Positives = 252/443 (56%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V  TG +        ++SF++ ++ + ++G  +   +  
Sbjct:   147 QELFSGGNTGINFEKY-DDIPVEATGNNCPPH----IESFSDVEMGEIIMGNIELTRYTR 201

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV---------GK 251
             P+P+Q HA P +   RD +  A+TGSGKT AF +P +  + ++  G+A+         G+
Sbjct:   202 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGR 261

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIY+          V+   VYGG     QI  L  G  +++ 
Sbjct:   262 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVA 321

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFS 366
             TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MFS
Sbjct:   322 TPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFS 381

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK 426
             AT+P E+  LA +++D   + + VG    + + ++ Q V  +++  +   LL LL    K
Sbjct:   382 ATFPKEIQMLARDFLDEY-IFLAVGRVG-STSENITQKVVWVEEADKRSFLLDLLNATGK 439

Query:   427 SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486
                + +LVF   +  AD LE+ L   G+   +IHG ++Q +R ++L  F+ G  P++VAT
Sbjct:   440 D--SLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 497

Query:   487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546
              VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G++ +FF   N  +  +L++
Sbjct:   498 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 557

Query:   547 VLREARQVVPDAL--LKFGTHVK 567
             +L EA+Q VP  L  + F  H K
Sbjct:   558 LLVEAKQEVPSWLENMAFEHHYK 580


>RGD|1309586 [details] [associations]
            symbol:RGD1309586 "similar to probable ATP-dependent RNA
            helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
            OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
            RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
            GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
            NextBio:684798 Uniprot:D3ZN21
        Length = 659

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 162/443 (36%), Positives = 252/443 (56%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V  TG +        ++SF++ ++ + ++G  +   +  
Sbjct:   146 QELFSGGNTGINFEKY-DDIPVEATGNNCPPH----IESFSDVEMGEIIMGNIELTRYTR 200

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV---------GK 251
             P+P+Q HA P +   RD +  A+TGSGKT AF +P +  + ++  G+A+         G+
Sbjct:   201 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGR 260

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIY+          V+   VYGG     QI  L  G  +++ 
Sbjct:   261 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVA 320

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFS 366
             TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MFS
Sbjct:   321 TPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFS 380

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK 426
             AT+P E+  LA +++D   + + VG    + + ++ Q V  +++  +   LL LL    K
Sbjct:   381 ATFPKEIQMLARDFLDEY-IFLAVGRVG-STSENITQKVVWVEEADKRSFLLDLLNATGK 438

Query:   427 SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486
                + +LVF   +  AD LE+ L   G+   +IHG ++Q +R ++L  F+ G  P++VAT
Sbjct:   439 D--SLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 496

Query:   487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546
              VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G++ +FF   N  +  +L++
Sbjct:   497 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 556

Query:   547 VLREARQVVPDAL--LKFGTHVK 567
             +L EA+Q VP  L  + F  H K
Sbjct:   557 LLVEAKQEVPSWLENMAFEHHYK 579


>UNIPROTKB|Q86TM3 [details] [associations]
            symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
            HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
            EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
            UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
            SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
            PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
            KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
            HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
            PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
            EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
            Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
            GermOnline:ENSG00000184735 Uniprot:Q86TM3
        Length = 631

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 147/393 (37%), Positives = 224/393 (56%)

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVL 260
             P+PIQS AWP +L G D I +A+TG+GKT+++ +P  +H+ S    +   +R  P  LVL
Sbjct:   245 PTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE--QRNGPGMLVL 302

Query:   261 SPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIE 320
             +PTRELA  +    +      G+KS+C+YGG ++  QI  +  GVDI+I TPGRL DL  
Sbjct:   303 TPTRELALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQM 361

Query:   321 MNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEY 380
              N  +L  ++++V+DEAD+MLDM FE  +R IL  +   RQ VM SATWP  V +LA  Y
Sbjct:   362 NNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSY 421

Query:   381 MDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQL 440
             +  +P+ V VG+ +L A + V Q + V  ++ +       +E  + S  ++V++F   + 
Sbjct:   422 LK-DPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVE--NMSPNDKVIMFVSQKH 478

Query:   441 EADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEV 500
              AD L +     G    ++HG   Q ++ +++  FK G   +++ TD+ +RGLD+ DV  
Sbjct:   479 IADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVTH 538

Query:   501 VINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALL 560
             V NY FP   + YVHR+G  GR GK G S T  T  +  +AGEL+ +L  A Q VP+ L+
Sbjct:   539 VYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILDRANQSVPEDLV 598

Query:   561 KFGTHVKKKESKLYGAHFREISADAPKAKKITF 593
                   K  + K +    RE  +  P  ++  F
Sbjct:   599 VMAEQYKLNQQKRH----RETRSRKPGQRRKEF 627


>UNIPROTKB|F1RX16 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
            signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
            of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
            "intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
            "cellular response to osmotic stress" evidence=IEA] [GO:0071243
            "cellular response to arsenic-containing substance" evidence=IEA]
            [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
            "positive regulation of translational initiation" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
            response" evidence=IEA] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=IEA] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IEA] [GO:0043024 "ribosomal small subunit
            binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
            evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
            [GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
            "negative regulation of protein complex assembly" evidence=IEA]
            [GO:0030308 "negative regulation of cell growth" evidence=IEA]
            [GO:0030307 "positive regulation of cell growth" evidence=IEA]
            [GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
            "response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
            signaling pathway via death domain receptors" evidence=IEA]
            [GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] [GO:0007243
            "intracellular protein kinase cascade" evidence=IEA] [GO:0007059
            "chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
            translation initiation factor 3 complex" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
            EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
        Length = 661

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 162/443 (36%), Positives = 251/443 (56%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V  TG +        ++SF++ ++ + ++G  +   +  
Sbjct:   148 QELFSGGNTGINFEKY-DDIPVEATGNNCPPH----IESFSDVEMGEIIMGNIELTRYTR 202

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV---------GK 251
             P+P+Q HA P +   RD +  A+TGSGKT AF +P +  + S+  G+A+         G+
Sbjct:   203 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGR 262

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIY+          V+   VYGG     QI  L  G  +++ 
Sbjct:   263 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVA 322

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFS 366
             TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MFS
Sbjct:   323 TPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFS 382

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK 426
             AT+P E+  LA +++D   + + VG    + + ++ Q V  +++  +   LL LL    K
Sbjct:   383 ATFPKEIQMLARDFLDEY-IFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATGK 440

Query:   427 SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486
                +  LVF   +  AD LE+ L   G+   +IHG ++Q +R ++L  F+ G  P++VAT
Sbjct:   441 D--SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query:   487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546
              VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G++ +FF   N  +  +L++
Sbjct:   499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNANITKDLLD 558

Query:   547 VLREARQVVPDAL--LKFGTHVK 567
             +L EA+Q VP  L  + +  H K
Sbjct:   559 LLVEAKQEVPSWLENMAYEHHYK 581


>DICTYBASE|DDB_G0287361 [details] [associations]
            symbol:ddx41 "DEAD box protein abstrakt"
            species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
            GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
            EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
            IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
            KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
        Length = 671

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 155/416 (37%), Positives = 236/416 (56%)

Query:   157 KEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLN 214
             K  D   ++  G+D+       + +F E K+P  V+     K  K PSPIQ    P +L+
Sbjct:   203 KVRDQLNIITDGEDIPPP----ITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILS 258

Query:   215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274
             GRD IGIA TGSGKT+ F +P ++  L       + +   P  L+L P+RELA Q YD++
Sbjct:   259 GRDMIGIAYTGSGKTLVFTLPMVLFALEEECKLPIIQGEGPFGLILCPSRELARQTYDLV 318

Query:   275 N--------DAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHL 326
             N        + G P  ++++   GG   + Q    + GV ++I TPGRL+DL+     + 
Sbjct:   319 NSFTNALHKNGGHP-QLRTLLAIGGIDLREQEHIFKKGVHMIIATPGRLLDLLNKKKINF 377

Query:   327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPV 386
                 ++ LDEADR++D+GFE+ +R +L   +  RQ ++FSAT P ++ + A   +   PV
Sbjct:   378 KLCKYLGLDEADRLIDLGFEDDIRSVLDNFTNQRQTLLFSATMPKKIQEFARSAL-VLPV 436

Query:   387 KVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLE 446
             +V VG    AAN +V Q VE +   ++   LL  L+K        VL+F   + + D + 
Sbjct:   437 EVNVGRAG-AANLNVTQEVEFVKPEAKIVYLLECLQKTPPP----VLIFCENKKDVDDIY 491

Query:   447 NMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSF 506
               L     + V+IHG K+Q ER  ++  F+EG   ++VATDVA++GLD P+++ VIN+  
Sbjct:   492 EYLLLKQVEAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDM 551

Query:   507 PLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN-KALAGELVNVLREARQVVPDALLK 561
             P   E+Y+HRIGRTGR G KGV+ TF   +N ++L  +L  +L EA+Q VP ALL+
Sbjct:   552 PREIENYIHRIGRTGRRGNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPALLE 607


>DICTYBASE|DDB_G0283661 [details] [associations]
            symbol:ddx3 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0003743 "translation initiation factor activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
            EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
            GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
            SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
            KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
        Length = 712

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 160/425 (37%), Positives = 233/425 (54%)

Query:   146 ENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKNFK--NPSP 203
             +N D+  I F   +DD   + T + +       L SF +  L D +LG  K+ K   P+P
Sbjct:   217 KNDDNIGIDFNAYDDDDISIETSEHI----CAPLNSFADVDLGDVLLGNIKHAKYTKPTP 272

Query:   204 IQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKA-------VGKRVNPL 256
             +Q  A P +L  RD +  A+TGSGKT AF  P +  +L +   +A       V +   P 
Sbjct:   273 VQKSALPIILKNRDLMACAQTGSGKTAAFLFPIISGILLDGAPEAPPAYKPGVPRAACPR 332

Query:   257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
              LVL+PTRELA QI+D  N       V SV +YGG     QI  L  G DI++ T GRL+
Sbjct:   333 ALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGRLV 392

Query:   317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIE 372
             DL+      LS++ ++VLDEADRMLDMGFE  +R I+S+  +     RQ +MFSAT+P +
Sbjct:   393 DLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMPGCRDRQTLMFSATFPKQ 452

Query:   373 VHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRV 432
             +  LA +++  N + + VG   +    ++ Q +E + +  ++  LL  L    KS     
Sbjct:   453 IQNLAADFLY-NYIFLKVGV--VGTTQNITQRIEYVVEEDKNSYLLDYLSGL-KSD-GLC 507

Query:   433 LVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARG 492
             L+F   +   D L   L +  +    IHG   Q ER  +L  F+    P +VATD+A+RG
Sbjct:   508 LIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDIASRG 567

Query:   493 LDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREAR 552
             L I +V +VIN+  P     YVHRIGRTGRAGKKG++ +FF   NK +  EL+ +++ + 
Sbjct:   568 LHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLMKASN 627

Query:   553 QVVPD 557
             Q +PD
Sbjct:   628 QDIPD 632


>UNIPROTKB|G5E631 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
            signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
            of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
            "intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
            "cellular response to osmotic stress" evidence=IEA] [GO:0071243
            "cellular response to arsenic-containing substance" evidence=IEA]
            [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
            "positive regulation of translational initiation" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
            response" evidence=IEA] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=IEA] [GO:0043065 "positive regulation of apoptotic
            process" evidence=IEA] [GO:0043024 "ribosomal small subunit
            binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
            evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
            [GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
            "negative regulation of protein complex assembly" evidence=IEA]
            [GO:0030308 "negative regulation of cell growth" evidence=IEA]
            [GO:0030307 "positive regulation of cell growth" evidence=IEA]
            [GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
            "response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
            signaling pathway via death domain receptors" evidence=IEA]
            [GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] [GO:0007243
            "intracellular protein kinase cascade" evidence=IEA] [GO:0007059
            "chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
            translation initiation factor 3 complex" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
            OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
            PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
            KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
        Length = 661

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 162/443 (36%), Positives = 251/443 (56%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V  TG +        ++SF++ ++ + ++G  +   +  
Sbjct:   147 QELFSGGNTGINFEKY-DDIPVEATGNNCPPH----IESFSDVEMGEIIMGNIELTRYTR 201

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV---------GK 251
             P+P+Q HA P +   RD +  A+TGSGKT AF +P +  + S+  G+A+         G+
Sbjct:   202 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGR 261

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIY+          V+   VYGG     QI  L  G  +++ 
Sbjct:   262 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVA 321

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFS 366
             TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MFS
Sbjct:   322 TPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFS 381

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK 426
             AT+P E+  LA +++D   + + VG    + + ++ Q V  +++  +   LL LL    K
Sbjct:   382 ATFPKEIQMLARDFLDEY-IFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATGK 439

Query:   427 SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486
                +  LVF   +  AD LE+ L   G+   +IHG ++Q +R ++L  F+ G  P++VAT
Sbjct:   440 D--SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 497

Query:   487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546
              VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G++ +FF   N  +  +L++
Sbjct:   498 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 557

Query:   547 VLREARQVVPDAL--LKFGTHVK 567
             +L EA+Q VP  L  + +  H K
Sbjct:   558 LLVEAKQEVPSWLENMAYEHHYK 580


>UNIPROTKB|J9P0V9 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
            RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
            KEGG:cfa:480886 Uniprot:J9P0V9
        Length = 662

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 162/443 (36%), Positives = 251/443 (56%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V  TG +        ++SF++ ++ + ++G  +   +  
Sbjct:   148 QELFSGGNTGINFEKY-DDIPVEATGNNCPPH----IESFSDVEMGEIIMGNIELTRYTR 202

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV---------GK 251
             P+P+Q HA P +   RD +  A+TGSGKT AF +P +  + S+  G+A+         G+
Sbjct:   203 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGR 262

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIY+          V+   VYGG     QI  L  G  +++ 
Sbjct:   263 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVA 322

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFS 366
             TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MFS
Sbjct:   323 TPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFS 382

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK 426
             AT+P E+  LA +++D   + + VG    + + ++ Q V  +++  +   LL LL    K
Sbjct:   383 ATFPKEIQMLARDFLDEY-IFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATGK 440

Query:   427 SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486
                +  LVF   +  AD LE+ L   G+   +IHG ++Q +R ++L  F+ G  P++VAT
Sbjct:   441 D--SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query:   487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546
              VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G++ +FF   N  +  +L++
Sbjct:   499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 558

Query:   547 VLREARQVVPDAL--LKFGTHVK 567
             +L EA+Q VP  L  + +  H K
Sbjct:   559 LLVEAKQEVPSWLENMAYEHHYK 581


>UNIPROTKB|O00571 [details] [associations]
            symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
            "mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
            speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
            regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
            translation initiation factor 3 complex" evidence=IDA] [GO:1900087
            "positive regulation of G1/S transition of mitotic cell cycle"
            evidence=IMP] [GO:0045948 "positive regulation of translational
            initiation" evidence=IMP] [GO:0031333 "negative regulation of
            protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
            initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
            regulation of translation" evidence=IMP] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
            stress" evidence=IDA] [GO:0071243 "cellular response to
            arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
            regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
            [GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
            "cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
            "positive regulation of translation" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
            initiation factor binding" evidence=IDA] [GO:0042256 "mature
            ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
            subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
            "ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
            helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IDA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
            [GO:0009615 "response to virus" evidence=IDA] [GO:0007243
            "intracellular protein kinase cascade" evidence=IDA] [GO:0032728
            "positive regulation of interferon-beta production" evidence=TAS]
            [GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
            "positive regulation of chemokine (C-C motif) ligand 5 production"
            evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
            [GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
            [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
            "transcription factor binding" evidence=IDA] [GO:0030308 "negative
            regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
            apoptotic signaling pathway via death domain receptors"
            evidence=IMP] [GO:0043066 "negative regulation of apoptotic
            process" evidence=IMP] [GO:0043154 "negative regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
            evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IMP]
            [GO:0043065 "positive regulation of apoptotic process"
            evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006200 "ATP catabolic process" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
            GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
            GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
            GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
            GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
            GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
            GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
            GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
            GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
            KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
            EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
            EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
            IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
            UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
            PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
            DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
            PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
            SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
            Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
            KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
            HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
            neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
            OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
            ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
            GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
            CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
            GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
            GO:GO:0032728 Uniprot:O00571
        Length = 662

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 162/443 (36%), Positives = 251/443 (56%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V  TG +        ++SF++ ++ + ++G  +   +  
Sbjct:   148 QELFSGGNTGINFEKY-DDIPVEATGNNCPPH----IESFSDVEMGEIIMGNIELTRYTR 202

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV---------GK 251
             P+P+Q HA P +   RD +  A+TGSGKT AF +P +  + S+  G+A+         G+
Sbjct:   203 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGR 262

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIY+          V+   VYGG     QI  L  G  +++ 
Sbjct:   263 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVA 322

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFS 366
             TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MFS
Sbjct:   323 TPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFS 382

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK 426
             AT+P E+  LA +++D   + + VG    + + ++ Q V  +++  +   LL LL    K
Sbjct:   383 ATFPKEIQMLARDFLDEY-IFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATGK 440

Query:   427 SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486
                +  LVF   +  AD LE+ L   G+   +IHG ++Q +R ++L  F+ G  P++VAT
Sbjct:   441 D--SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query:   487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546
              VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G++ +FF   N  +  +L++
Sbjct:   499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 558

Query:   547 VLREARQVVPDAL--LKFGTHVK 567
             +L EA+Q VP  L  + +  H K
Sbjct:   559 LLVEAKQEVPSWLENMAYEHHYK 581


>TAIR|locus:2087852 [details] [associations]
            symbol:PMH2 "putative mitochondrial RNA helicase 2"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
            "cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
            evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
            [GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
            GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
            GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
            UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
            PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
            KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
            HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
            ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
            Uniprot:Q9LUW5
        Length = 616

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 145/334 (43%), Positives = 209/334 (62%)

Query:   196 KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLS-NRKGKAVGKRVN 254
             K  +   PIQ       + GRD IG A+TG+GKT+AFG+P +  ++  N K    G+  N
Sbjct:   122 KGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKH---GRGRN 178

Query:   255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGR 314
             PLCLVL+PTRELA Q+     ++  P  + ++C+YGGT    Q+  L  GVD+ +GTPGR
Sbjct:   179 PLCLVLAPTRELARQVEKEFRESA-P-SLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGR 236

Query:   315 LIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVH 374
             +IDL++    +LSEV FVVLDEAD+ML +GF E V  IL K+   RQ +MFSAT P  + 
Sbjct:   237 VIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIR 296

Query:   375 KLAEEYMDPNPVKV-VVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVL 433
              L ++Y++ NP+ V +VG  D      +     + D   R   +  L+ ++ K    + +
Sbjct:   297 SLTKKYLN-NPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKG--GKCI 353

Query:   434 VFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGL 493
             VF   + +ADRL   L RS +K  A+HG  +Q +R ++L+ F++G   ++VATDVAARGL
Sbjct:   354 VFTQTKRDADRLSYALARS-FKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGL 412

Query:   494 DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKG 527
             D+P+V+++I+Y  P  TE +VHR GRTGRAGKKG
Sbjct:   413 DVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKG 446


>MGI|MGI:103064 [details] [associations]
            symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
            X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
            "RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
            "mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
            catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
            of translation" evidence=IEA] [GO:0006915 "apoptotic process"
            evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
            [GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008134 "transcription factor binding" evidence=ISO]
            [GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
            "metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
            initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
            apoptotic signaling pathway via death domain receptors"
            evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
            "RNA secondary structure unwinding" evidence=ISO] [GO:0016020
            "membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030307 "positive regulation of cell growth" evidence=ISO]
            [GO:0030308 "negative regulation of cell growth" evidence=ISO]
            [GO:0031333 "negative regulation of protein complex assembly"
            evidence=ISO] [GO:0031369 "translation initiation factor binding"
            evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
            [GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
            "ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
            assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
            binding" evidence=ISO] [GO:0043065 "positive regulation of
            apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
            of apoptotic process" evidence=ISO] [GO:0043154 "negative
            regulation of cysteine-type endopeptidase activity involved in
            apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
            of cysteine-type endopeptidase activity involved in apoptotic
            process" evidence=ISO] [GO:0045087 "innate immune response"
            evidence=ISO] [GO:0045727 "positive regulation of translation"
            evidence=ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] [GO:0045948
            "positive regulation of translational initiation" evidence=ISO]
            [GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
            "cellular response to arsenic-containing substance" evidence=ISO]
            [GO:0071470 "cellular response to osmotic stress" evidence=ISO]
            [GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
            [GO:1900087 "positive regulation of G1/S transition of mitotic cell
            cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
            apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
            GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
            GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
            GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
            GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
            GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
            GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
            GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
            GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
            GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
            HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
            GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
            IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
            ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
            MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
            REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
            Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
            InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
            Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
        Length = 662

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 165/445 (37%), Positives = 251/445 (56%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V  TG +        ++SF++ ++ + ++G  +   +  
Sbjct:   148 QELFSGGNTGINFEKY-DDIPVEATGNNCPPH----IESFSDVEMGEIIMGNIELTRYTR 202

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV---------GK 251
             P+P+Q HA P +   RD +  A+TGSGKT AF +P +  + ++  G+A+         G+
Sbjct:   203 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGR 262

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIY+          V+   VYGG     QI  L  G  +++ 
Sbjct:   263 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVA 322

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFS 366
             TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MFS
Sbjct:   323 TPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFS 382

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIV--EVLDDRSRDQRLLALLEKY 424
             AT+P E+  LA +++D   + + VG     + +   ++V  E +D RS    LL LL   
Sbjct:   383 ATFPKEIQMLARDFLDEY-IFLAVGRVGSTSENITQKVVWVEEIDKRSF---LLDLLNAT 438

Query:   425 HKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMV 484
              K   +  LVF   +  AD LE+ L   G+   +IHG ++Q +R ++L  F+ G  P++V
Sbjct:   439 GKD--SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILV 496

Query:   485 ATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGEL 544
             AT VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G++ +FF   N  +  +L
Sbjct:   497 ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 556

Query:   545 VNVLREARQVVPDAL--LKFGTHVK 567
             +++L EA+Q VP  L  + F  H K
Sbjct:   557 LDLLVEAKQEVPSWLENMAFEHHYK 581


>RGD|1564771 [details] [associations]
            symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
            X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
            PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
            Uniprot:D4ADE8
        Length = 662

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 165/445 (37%), Positives = 251/445 (56%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V  TG +        ++SF++ ++ + ++G  +   +  
Sbjct:   148 QELFSGGNTGINFEKY-DDIPVEATGNNCPPH----IESFSDVEMGEIIMGNIELTRYTR 202

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV---------GK 251
             P+P+Q HA P +   RD +  A+TGSGKT AF +P +  + ++  G+A+         G+
Sbjct:   203 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGR 262

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIY+          V+   VYGG     QI  L  G  +++ 
Sbjct:   263 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVA 322

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFS 366
             TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MFS
Sbjct:   323 TPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFS 382

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIV--EVLDDRSRDQRLLALLEKY 424
             AT+P E+  LA +++D   + + VG     + +   ++V  E +D RS    LL LL   
Sbjct:   383 ATFPKEIQMLARDFLDEY-IFLAVGRVGSTSENITQKVVWVEEIDKRSF---LLDLLNAT 438

Query:   425 HKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMV 484
              K   +  LVF   +  AD LE+ L   G+   +IHG ++Q +R ++L  F+ G  P++V
Sbjct:   439 GKD--SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILV 496

Query:   485 ATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGEL 544
             AT VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G++ +FF   N  +  +L
Sbjct:   497 ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 556

Query:   545 VNVLREARQVVPDAL--LKFGTHVK 567
             +++L EA+Q VP  L  + F  H K
Sbjct:   557 LDLLVEAKQEVPSWLENMAFEHHYK 581


>CGD|CAL0005725 [details] [associations]
            symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
            EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
            ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
            KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
        Length = 884

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 168/443 (37%), Positives = 251/443 (56%)

Query:   150 DETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKNFKNPSPIQSHAW 209
             DE +   +++ D  + V G DV     K       + L   +    K F+ PS IQS A 
Sbjct:   268 DEQVELIRQDLDN-IKVKGTDVPRPILKWSHLALPTNLSSVIHDKLK-FEKPSAIQSQAL 325

Query:   210 PFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQ 269
             P +L+GRD IGIAKTGSGKT+++ +P + H+   +  K       P+ L+LSPTRELA Q
Sbjct:   326 PTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSK---DNQGPIGLILSPTRELALQ 382

Query:   270 IY-DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN---VCH 325
             I  ++LN   +   ++  C YGG+S + QI  L+ GV+I++GTPGR+IDL+  N   V +
Sbjct:   383 IEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGRVLN 442

Query:   326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNP 385
             L   +FVVLDEADRM D+GFE  V  IL++I   RQ V+FSAT+P ++  LA++ +  +P
Sbjct:   443 LKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTVLFSATFPRKMETLAKQILT-DP 501

Query:   386 VKVVVGSEDLAANHDVMQIV--EVL---DDRSRDQRLLAL---LEKYH-KSQRNRVLVFA 436
             V ++VG   + A     ++V  E      D+ + QR+  L   L  Y  +   +++LVF 
Sbjct:   502 VVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKLHDILTNYQIEHPDSKILVFT 561

Query:   437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFK--EGTCPLMVATDVAARGLD 494
               Q +AD L   L  + +  +AIHG K Q +R  ++  F   +    +++AT +AARGLD
Sbjct:   562 EKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIAARGLD 621

Query:   495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQV 554
             + ++ +VIN+  P   EDYVHR+GRTGRAG KG + TF ++        LV  L+ +   
Sbjct:   622 VRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNLVKALKLSHSD 681

Query:   555 VPDALL----KFGTHVKKKESKL 573
             +   L     KF T VK  + K+
Sbjct:   682 IDPKLEEIANKFVTKVKAGKEKI 704


>UNIPROTKB|Q5ADL0 [details] [associations]
            symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
            PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
            EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
            ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
            KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
        Length = 884

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 168/443 (37%), Positives = 251/443 (56%)

Query:   150 DETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKNFKNPSPIQSHAW 209
             DE +   +++ D  + V G DV     K       + L   +    K F+ PS IQS A 
Sbjct:   268 DEQVELIRQDLDN-IKVKGTDVPRPILKWSHLALPTNLSSVIHDKLK-FEKPSAIQSQAL 325

Query:   210 PFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQ 269
             P +L+GRD IGIAKTGSGKT+++ +P + H+   +  K       P+ L+LSPTRELA Q
Sbjct:   326 PTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSK---DNQGPIGLILSPTRELALQ 382

Query:   270 IY-DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN---VCH 325
             I  ++LN   +   ++  C YGG+S + QI  L+ GV+I++GTPGR+IDL+  N   V +
Sbjct:   383 IEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGRVLN 442

Query:   326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNP 385
             L   +FVVLDEADRM D+GFE  V  IL++I   RQ V+FSAT+P ++  LA++ +  +P
Sbjct:   443 LKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTVLFSATFPRKMETLAKQILT-DP 501

Query:   386 VKVVVGSEDLAANHDVMQIV--EVL---DDRSRDQRLLAL---LEKYH-KSQRNRVLVFA 436
             V ++VG   + A     ++V  E      D+ + QR+  L   L  Y  +   +++LVF 
Sbjct:   502 VVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKLHDILTNYQIEHPDSKILVFT 561

Query:   437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFK--EGTCPLMVATDVAARGLD 494
               Q +AD L   L  + +  +AIHG K Q +R  ++  F   +    +++AT +AARGLD
Sbjct:   562 EKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIAARGLD 621

Query:   495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQV 554
             + ++ +VIN+  P   EDYVHR+GRTGRAG KG + TF ++        LV  L+ +   
Sbjct:   622 VRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNLVKALKLSHSD 681

Query:   555 VPDALL----KFGTHVKKKESKL 573
             +   L     KF T VK  + K+
Sbjct:   682 IDPKLEEIANKFVTKVKAGKEKI 704


>UNIPROTKB|Q3MSQ8 [details] [associations]
            symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
            species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
            evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
            GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
            HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
            ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
        Length = 724

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 160/423 (37%), Positives = 238/423 (56%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVL-GCCKN-FKNPSPIQSHAWPFLL 213
             F + DD  V V+G DV  A    + +F E+ L D +    CK+ +   +PIQ H+ P ++
Sbjct:   266 FDKYDDIVVEVSGSDVPPA----ILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIV 321

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVL-SNRKGKAVGKRVNPLCLVLSPTRELADQIY- 271
              GRD +  A+TGSGKT AF +P + H++    +  A      P  ++++PTREL +QIY 
Sbjct:   322 AGRDLMACAQTGSGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYL 381

Query:   272 DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331
             D    +   C V+ V +YGGT     +  +  G +I+  TPGRL+D+I      L+++ +
Sbjct:   382 DARKFSYGTC-VRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRY 440

Query:   332 VVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPNPVK 387
             +VLDEADRMLDMGF E +  +L    +     RQ +MFSAT+P  +  LA E + P+ + 
Sbjct:   441 LVLDEADRMLDMGFREDIENLLKSSGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLF 500

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
             VVVG    A + DV Q+V  +D+  +  +L+ +L++       R +VF   + +AD +  
Sbjct:   501 VVVGQVGGACS-DVEQMVIEVDEFGKKDKLMEILQEIGSE---RTMVFVKTKKKADFIAT 556

Query:   448 MLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507
              L +      +IHG + Q ER  +L  F+ G CP++VAT VAARGLDI +V  VIN+  P
Sbjct:   557 FLCQEKVPSTSIHGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIP 616

Query:   508 LTTEDYVHRIGRTGRAGKKGVSHTFFTNHN---KALAGELVNVLREARQVVPDAL--LKF 562
                ++YVHRIGRTGR G  G + +FF       + +A  LV VL +A Q VP  L  + F
Sbjct:   617 DDIDEYVHRIGRTGRCGNTGRAISFFDKRGDDEQRIARSLVKVLSDAHQEVPAWLEEVAF 676

Query:   563 GTH 565
               H
Sbjct:   677 SAH 679


>FB|FBgn0032690 [details] [associations]
            symbol:CG10333 species:7227 "Drosophila melanogaster"
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
            nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
            snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
            "precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
            GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
            GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
            OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
            UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
            GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
            InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
        Length = 822

 Score = 368 (134.6 bits), Expect = 3.0e-63, Sum P(2) = 3.0e-63
 Identities = 84/214 (39%), Positives = 127/214 (59%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKN 200
             KE++   +     F+E  D  V + G  +       ++S+ ES  P +++       +K 
Sbjct:   363 KENDEMTERDWRIFRE--DYNVTIKGGRIPNP----IRSWNESGFPKEIIDIIDKVGYKE 416

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGK-RVNPLCLV 259
             P+PIQ  A P  L  RD IG+A+TGSGKT+AF +P +  + S  K + +      P  ++
Sbjct:   417 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGPYAII 476

Query:   260 LSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLI 319
             ++PTRELA QI +     G+P G+++V V GG S++ Q   LR G +IVI TPGRLID++
Sbjct:   477 MAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 536

Query:   320 EMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFIL 353
             E     L++ +++VLDEADRM+DMGFE  V+ IL
Sbjct:   537 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 570

 Score = 314 (115.6 bits), Expect = 3.0e-63, Sum P(2) = 3.0e-63
 Identities = 83/225 (36%), Positives = 121/225 (53%)

Query:   360 RQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLA 419
             RQ VMF+AT P  V +LA  Y+   P  V +GS          QIV ++ +  + ++L+ 
Sbjct:   602 RQTVMFTATMPPAVERLARTYLR-RPATVYIGSVGKPTER-TEQIVYMMGENDKRKKLME 659

Query:   420 LLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT 479
             +L +        V++F   +  AD L   L + G+    +HG K Q +R  +L+  K G 
Sbjct:   660 ILSRKIDPP---VIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGA 716

Query:   480 CPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539
               ++VATDVA RG+DI DV +VINY    T EDY HRIGRTGRAGK G + +F T  + A
Sbjct:   717 KDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAISFVTKDDSA 776

Query:   540 LAGELVNVLREAR------QVV--PDALLKFGTHVKKK--ESKLY 574
             L  +L   +  +       +++  P+A  K GT V KK  E K++
Sbjct:   777 LFYDLKQCVSASPVSTCPPELMNHPEAQHKPGTVVTKKRREEKIF 821


>UNIPROTKB|F1NIX1 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
            IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
            Uniprot:F1NIX1
        Length = 638

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 163/435 (37%), Positives = 245/435 (56%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V  TG +        ++SF++  + + ++G  +   +  
Sbjct:   126 QELFSGSNTGINFEKY-DDIPVEATGSNCPPH----IESFSDVDMGEIIMGNIELTRYTR 180

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV---------GK 251
             P+P+Q HA P +   RD +  A+TGSGKT AF +P +  + ++  G A+         G+
Sbjct:   181 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKENGRYGR 240

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIY+          V+   VYGG     QI  L  G  +++ 
Sbjct:   241 RKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVA 300

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFS 366
             TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MFS
Sbjct:   301 TPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFS 360

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIV--EVLDDRSRDQRLLALLEKY 424
             AT+P E+  LA +++D   + + VG     + +   ++V  E LD RS    LL LL   
Sbjct:   361 ATFPKEIQMLARDFLDEY-IFLAVGRVGSTSENITQKVVWVEELDKRSF---LLDLLNAT 416

Query:   425 HKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMV 484
              K   +  LVF   +  AD LE+ L   G+   +IHG ++Q +R ++L  F+ G  P++V
Sbjct:   417 GKD--SLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILV 474

Query:   485 ATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGEL 544
             AT VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G++ +FF   N  +  +L
Sbjct:   475 ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 534

Query:   545 VNVLREARQVVPDAL 559
             +++L EA+Q VP  L
Sbjct:   535 LDLLVEAKQEVPSWL 549


>TAIR|locus:2087832 [details] [associations]
            symbol:PMH1 "putative mitochondrial RNA helicase 1"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
            GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
            EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
            UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
            STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
            GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
            InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
            Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
        Length = 610

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 140/326 (42%), Positives = 204/326 (62%)

Query:   203 PIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSP 262
             PIQ       + GRD IG A+TG+GKT+AFG+P +  ++        GK  NP CLVL+P
Sbjct:   141 PIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGK--NPQCLVLAP 198

Query:   263 TRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN 322
             TRELA Q+     ++  P  + ++C+YGGT    Q+  L  G+D+ +GTPGR+IDL++  
Sbjct:   199 TRELARQVEKEFRESA-P-SLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRG 256

Query:   323 VCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMD 382
               +LSEV FVVLDEAD+ML +GF E V  IL K+   RQ +MFSAT P  +  L ++Y++
Sbjct:   257 ALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLN 316

Query:   383 PNPVKV-VVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLE 441
              NP+ + +VG  D      +       D   R   +  L++++ K    + +VF   + +
Sbjct:   317 -NPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKG--GKCIVFTQTKRD 373

Query:   442 ADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVV 501
             ADRL   L +S +K  A+HG  +Q +R ++L+ F++G   ++VATDVAARGLD+P+V++V
Sbjct:   374 ADRLAFGLAKS-YKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLV 432

Query:   502 INYSFPLTTEDYVHRIGRTGRAGKKG 527
             I+Y  P  TE +VHR GRTGRAGKKG
Sbjct:   433 IHYELPNNTETFVHRTGRTGRAGKKG 458


>FB|FBgn0015331 [details] [associations]
            symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
            "establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
            system development" evidence=NAS] [GO:0005634 "nucleus"
            evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
            evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
            GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
            EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
            ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
            MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
            EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
            UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
            OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
            NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
        Length = 619

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 154/409 (37%), Positives = 225/409 (55%)

Query:   179 LKSFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             ++SF E K P  +L     K  KNP+PIQ    P +L GRD IGIA TGSGKT+ F +P 
Sbjct:   176 IRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPV 235

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK---PCG---VKSVCVYG 290
             +M  L         +   P  L++ P+RELA Q ++++    K    CG   ++S    G
Sbjct:   236 IMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMG 295

Query:   291 GTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVR 350
             G      +  +  GV IV+ TPGRL+D+++  +  L    ++ +DEADRM+DMGFEE VR
Sbjct:   296 GLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVR 355

Query:   351 FILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDD 410
              I S     RQ ++FSAT P ++   A   +   PV + VG    AA+ +V Q VE +  
Sbjct:   356 TIFSFFKGQRQTLLFSATMPKKIQNFARSAL-VKPVTINVGRAG-AASMNVTQQVEYVKQ 413

Query:   411 RSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTK 470
              ++   LL  L+K        VL+FA  + + D +   L   G + VAIHG K Q ER++
Sbjct:   414 EAKVVYLLDCLQKTAPP----VLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSR 469

Query:   471 SLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSH 530
             ++  ++ G   ++VATDVA++GLD P+V+ VINY  P   E+YVHRIGRTGR+  KG++ 
Sbjct:   470 AVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLAT 529

Query:   531 TFF--TNHNKALAGELVNVLREARQVVPDALLKFGTHVKKKESKLYGAH 577
             T    T     L  +L ++L E +Q VPD L +     + +   L  +H
Sbjct:   530 TLINKTTEQSVLL-DLKHLLIEGKQEVPDFLDELAPETEHQHLDLGDSH 577


>POMBASE|SPCC1795.11 [details] [associations]
            symbol:sum3 "translation initiation RNA helicase Sum3"
            species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
            translational initiation" evidence=IMP] [GO:0003743 "translation
            initiation factor activity" evidence=IEA] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
            "regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
            "positive regulation of gene expression" evidence=IMP] [GO:0031047
            "gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
            conjugation with cellular fusion" evidence=IGI] [GO:0071470
            "cellular response to osmotic stress" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
            GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
            GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
            GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
            OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
            EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
            ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
            MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
            EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
            NextBio:20799875 Uniprot:O13370
        Length = 636

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 160/423 (37%), Positives = 232/423 (54%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLL 213
             F++ DD  V V+G D++      +  FT   L   +L   K   +  P+P+Q ++ P + 
Sbjct:   150 FEKYDDIPVEVSGGDIEP-----VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVT 204

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKA---------VG---KRVNPLCLVLS 261
             +GRD +  A+TGSGKT  F  P +   L+  KG A         +G   ++  P  L+L+
Sbjct:   205 SGRDLMACAQTGSGKTAGFLFPILS--LAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILA 262

Query:   262 PTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEM 321
             PTREL  QI++          V+   VYGG   + QI  +  G D++  TPGRL+DLI+ 
Sbjct:   263 PTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDR 322

Query:   322 NVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLA 377
                 L+ + F+VLDEADRMLDMGFE  +R I+    +     RQ +MFSAT+P ++  LA
Sbjct:   323 GRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLA 382

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFAL 437
              +++  + V + VG     + +   ++V V D   R   LL +L           L+F  
Sbjct:   383 RDFLK-DYVFLSVGRVGSTSENITQKVVHVEDSEKRSY-LLDILHTL--PPEGLTLIFVE 438

Query:   438 YQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497
              +  AD L + L  S +   +IHG + Q ER ++L LF+ G   +MVAT VA+RGLDIP+
Sbjct:   439 TKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPN 498

Query:   498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPD 557
             V  VINY  P   +DYVHRIGRTGRAG  G +  FF  +NK +A EL+ +L+EA Q  P 
Sbjct:   499 VTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPS 558

Query:   558 ALL 560
              L+
Sbjct:   559 FLI 561


>UNIPROTKB|F1NIX2 [details] [associations]
            symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
            Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
        Length = 636

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 163/436 (37%), Positives = 245/436 (56%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V  TG +        ++SF++  + + ++G  +   +  
Sbjct:   124 QELFSGSNTGINFEKY-DDIPVEATGSNCPPH----IESFSDVDMGEIIMGNIELTRYTR 178

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV----------G 250
             P+P+Q HA P +   RD +  A+TGSGKT AF +P +  + ++  G A+          G
Sbjct:   179 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKATNGRYG 238

Query:   251 KRVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVI 309
             +R   P+ LVL+PTRELA QIY+          V+   VYGG     QI  L  G  +++
Sbjct:   239 RRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLV 298

Query:   310 GTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMF 365
              TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MF
Sbjct:   299 ATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 358

Query:   366 SATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIV--EVLDDRSRDQRLLALLEK 423
             SAT+P E+  LA +++D   + + VG     + +   ++V  E LD RS    LL LL  
Sbjct:   359 SATFPKEIQMLARDFLDEY-IFLAVGRVGSTSENITQKVVWVEELDKRSF---LLDLLNA 414

Query:   424 YHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLM 483
               K   +  LVF   +  AD LE+ L   G+   +IHG ++Q +R ++L  F+ G  P++
Sbjct:   415 TGKD--SLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPIL 472

Query:   484 VATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGE 543
             VAT VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G++ +FF   N  +  +
Sbjct:   473 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 532

Query:   544 LVNVLREARQVVPDAL 559
             L+++L EA+Q VP  L
Sbjct:   533 LLDLLVEAKQEVPSWL 548


>MGI|MGI:1349406 [details] [associations]
            symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
            Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
            CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
            RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
            SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
            PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
            InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
            GermOnline:ENSMUSG00000069045 Uniprot:Q62095
        Length = 658

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 164/445 (36%), Positives = 251/445 (56%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V  TG +        +++F++ ++ + ++G  +   +  
Sbjct:   147 QELFSGGNTGINFEKY-DDIPVEATGNNCPPH----IENFSDIEMGEIIMGNIELTRYTR 201

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV---------GK 251
             P+P+Q HA P +   RD +  A+TGSGKT AF +P +  + ++  G+A+         G+
Sbjct:   202 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGR 261

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIY+          V+   VYGG     QI  L  G  +++ 
Sbjct:   262 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVA 321

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFS 366
             TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MFS
Sbjct:   322 TPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFS 381

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIV--EVLDDRSRDQRLLALLEKY 424
             AT+P E+  LA +++D   + + VG     + +   ++V  E LD RS    LL LL   
Sbjct:   382 ATFPKEIQMLARDFLDEY-IFLAVGRVGSTSENITQKVVWVEELDKRSF---LLDLLNAT 437

Query:   425 HKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMV 484
              K   +  LVF   +  AD LEN L +  +   +IHG ++Q +R ++L  F+ G  P++V
Sbjct:   438 GKD--SLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILV 495

Query:   485 ATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGEL 544
             AT VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G++ +FF   N  +  +L
Sbjct:   496 ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDL 555

Query:   545 VNVLREARQVVPDAL--LKFGTHVK 567
             +++L EA+Q VP  L  + +  H K
Sbjct:   556 LDLLVEAKQEVPSWLESMAYEHHYK 580


>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
            symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
            RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
            Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
            OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
        Length = 709

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 150/381 (39%), Positives = 223/381 (58%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV-------- 249
             +  P+P+Q +A P +   RD +  A+TGSGKT AF +P +  + S   G+A+        
Sbjct:   243 YTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQIYSEGPGEALQATKASTQ 302

Query:   250 ---GKRVN----PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALR 302
                GK V     P+ LVL+PTRELA QIYD          V+   VYGG     QI  L 
Sbjct:   303 QENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLE 362

Query:   303 SGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL---- 358
              G  +++ TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++    
Sbjct:   363 RGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKG 422

Query:   359 ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLL 418
             +RQ +MFSAT+P E+  LA ++++   + + VG    + + ++ Q V  +++  +   LL
Sbjct:   423 SRQTMMFSATFPKEIQILARDFLEEY-IFLAVGRVG-STSENITQKVVWVEENDKRSFLL 480

Query:   419 ALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEG 478
              LL    K   +  LVF   +  AD LE+ L R G+   +IHG ++Q +R ++L  F+ G
Sbjct:   481 DLLNATGKD--SLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSG 538

Query:   479 TCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNK 538
              CP+MVAT VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G++ +F+ + N 
Sbjct:   539 RCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNS 598

Query:   539 ALAGELVNVLREARQVVPDAL 559
              +  +L+++L EA+Q VP  L
Sbjct:   599 NITKDLLDILVEAKQEVPSWL 619


>UNIPROTKB|D3IVZ2 [details] [associations]
            symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
            EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
            Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
        Length = 661

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 161/443 (36%), Positives = 250/443 (56%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V VTG +        ++SF++  + + ++G  +   +  
Sbjct:   148 QELFSGGNTGINFEKY-DDIPVEVTGNNCPPH----IESFSDVAMGEIIMGNIELTRYTR 202

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV---------GK 251
             P+P+Q HA P +   RD +  A+TGSGKT AF +P +  + ++  G+A+         G+
Sbjct:   203 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKESGRYGR 262

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIY+          V    VYGG     QI  L  G  +++ 
Sbjct:   263 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQIRDLERGCHLLVA 322

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFS 366
             TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MFS
Sbjct:   323 TPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIEQDTMPPKGVRHTMMFS 382

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK 426
             AT+P E+  LA +++D   + + VG    + + ++ Q V  +++  +   LL LL     
Sbjct:   383 ATFPKEIQMLARDFLDEY-IFLAVGRVG-STSENITQKVVWVEEADKRSFLLDLLNA--T 438

Query:   427 SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486
                +  LVF   +  AD LE+ L   G+   +IHG ++Q +R ++L  F+ G  P++VAT
Sbjct:   439 GTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query:   487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546
              VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G++ +FF   N  ++ +L++
Sbjct:   499 AVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGLATSFFNERNINISKDLLD 558

Query:   547 VLREARQVVPDAL--LKFGTHVK 567
             +L EA+Q VP  L  + +  H K
Sbjct:   559 LLVEAKQEVPSWLENMAYEHHYK 581


>UNIPROTKB|I3LDV0 [details] [associations]
            symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
            Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
        Length = 667

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 164/456 (35%), Positives = 256/456 (56%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V  TG +      + ++SF++ ++ + ++G  +   +  
Sbjct:   149 QELFSGGNTGINFEKY-DDIPVEATGNNCP----RHIESFSDVEMGEIIMGNIELTRYTR 203

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV---------GK 251
             P+P+Q HA P +   RD +  A+TGSGKT AF +P +  + ++  G+A+         G+
Sbjct:   204 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGR 263

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIY+          V+   VYGG     QI  L  G  +++ 
Sbjct:   264 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVA 323

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFS 366
             TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MFS
Sbjct:   324 TPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFS 383

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK 426
             AT+P E+  LA +++D   + + VG    + + ++ Q V  +++  +   LL LL    K
Sbjct:   384 ATFPKEIQMLARDFLDEY-IFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATGK 441

Query:   427 SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486
                +  LVF   +  AD LE+ L   G+   +IHG ++Q +R ++L  F+ G  P++VAT
Sbjct:   442 D--SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 499

Query:   487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGV---SHTFFTNHNKALAGE 543
              VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G+   + +FF   N  +  +
Sbjct:   500 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLIGLATSFFNERNINITKD 559

Query:   544 LVNVLREARQVVPDAL--LKFGTHVK---KKESKLY 574
             L+++L EA+Q VP  L  + +  H K   +  SK Y
Sbjct:   560 LLDLLVEAKQEVPSWLENMAYEHHYKGSSRGRSKSY 595


>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
            symbol:PFE0430w "ATP-dependent RNA helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
            RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
            MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
            KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
            HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
        Length = 1490

 Score = 650 (233.9 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 148/412 (35%), Positives = 245/412 (59%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCC--KNFKN 200
             KE  N  D  +  F++ ++G ++V GK+      + ++ F +  LP  +L     KNFK 
Sbjct:   691 KEITNMKDSDVDMFRK-NNGNIIVRGKNCP----RPVQYFYQCGLPSKILQILEKKNFKK 745

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVL 260
                IQ    P L+ GRD I IA+TGSGKT+++  P + HVL     + +     P+ ++L
Sbjct:   746 MYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQ---EPLRNNDGPISIIL 802

Query:   261 SPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIE 320
             +PTREL+ Q+ +      K   ++ + VYGG++   Q+  L+ GV+I++GTPGR+ID++ 
Sbjct:   803 TPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILVGTPGRIIDILT 862

Query:   321 MNVC---HLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
             ++ C   +L+ VSFVVLDEADR+LD+GFE  +  IL      +Q  M SAT+P  +  +A
Sbjct:   863 ISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTAMISATFPNYIQNMA 922

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFAL 437
             ++ +   P++++VG +    N+++ Q VE++++  +  RLL LL ++ K     VL+F  
Sbjct:   923 KKLLY-KPIEIIVGEKG-KTNNNIYQFVEIIEESKKVFRLLKLLGEWIKY--GLVLIFVN 978

Query:   438 YQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497
              Q+EAD L   L +  + ++ +HG + Q +R  +L  FK+    +++AT V ARG+DI +
Sbjct:   979 KQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKVLIATSVMARGIDIKN 1038

Query:   498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLR 549
             + +VINY  P   EDY+HRIGRTGR+   G ++TF   +    A ++ N+L+
Sbjct:  1039 IILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTKAYDIYNLLK 1090


>UNIPROTKB|Q8I416 [details] [associations]
            symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
            RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
            MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
            KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
            HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
        Length = 1490

 Score = 650 (233.9 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 148/412 (35%), Positives = 245/412 (59%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCC--KNFKN 200
             KE  N  D  +  F++ ++G ++V GK+      + ++ F +  LP  +L     KNFK 
Sbjct:   691 KEITNMKDSDVDMFRK-NNGNIIVRGKNCP----RPVQYFYQCGLPSKILQILEKKNFKK 745

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVL 260
                IQ    P L+ GRD I IA+TGSGKT+++  P + HVL     + +     P+ ++L
Sbjct:   746 MYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQ---EPLRNNDGPISIIL 802

Query:   261 SPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIE 320
             +PTREL+ Q+ +      K   ++ + VYGG++   Q+  L+ GV+I++GTPGR+ID++ 
Sbjct:   803 TPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILVGTPGRIIDILT 862

Query:   321 MNVC---HLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
             ++ C   +L+ VSFVVLDEADR+LD+GFE  +  IL      +Q  M SAT+P  +  +A
Sbjct:   863 ISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTAMISATFPNYIQNMA 922

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFAL 437
             ++ +   P++++VG +    N+++ Q VE++++  +  RLL LL ++ K     VL+F  
Sbjct:   923 KKLLY-KPIEIIVGEKG-KTNNNIYQFVEIIEESKKVFRLLKLLGEWIKY--GLVLIFVN 978

Query:   438 YQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497
              Q+EAD L   L +  + ++ +HG + Q +R  +L  FK+    +++AT V ARG+DI +
Sbjct:   979 KQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKVLIATSVMARGIDIKN 1038

Query:   498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLR 549
             + +VINY  P   EDY+HRIGRTGR+   G ++TF   +    A ++ N+L+
Sbjct:  1039 IILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTKAYDIYNLLK 1090


>UNIPROTKB|B4DXX7 [details] [associations]
            symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
            sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
            UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
            IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
            UCSC:uc011nar.1 Uniprot:B4DXX7
        Length = 657

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 159/443 (35%), Positives = 248/443 (55%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V  TG +        +++F++  + + ++G  +   +  
Sbjct:   143 QELFSGGNTGINFEKY-DDIPVEATGSNCPPH----IENFSDIDMGEIIMGNIELTRYTR 197

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV---------GK 251
             P+P+Q HA P +   RD +  A+TGSGKT AF +P +  + ++  G+A+         G+
Sbjct:   198 PTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGR 257

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIY+          V+   VYGG     QI  L  G  +++ 
Sbjct:   258 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVA 317

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFS 366
             TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MFS
Sbjct:   318 TPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFS 377

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK 426
             AT+P E+  LA +++D   + + VG    + + ++ Q V  ++D  +   LL +L     
Sbjct:   378 ATFPKEIQMLARDFLDEY-IFLAVGRVG-STSENITQKVVWVEDLDKRSFLLDILGA--T 433

Query:   427 SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486
                +  LVF   +  AD LE+ L   G+   +IHG ++Q +R ++L  F+ G  P++VAT
Sbjct:   434 GSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 493

Query:   487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546
              VAARGLDI +V  VIN+  P   E+YVHRIGRTGR G  G++ +FF   N  +  +L++
Sbjct:   494 AVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLD 553

Query:   547 VLREARQVVPDAL--LKFGTHVK 567
             +L EA+Q VP  L  + +  H K
Sbjct:   554 LLVEAKQEVPSWLENMAYEHHYK 576


>UNIPROTKB|O15523 [details] [associations]
            symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
            HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
            HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
            EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
            RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
            SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
            PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
            Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
            KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
            HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
            InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
            NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
            Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
        Length = 660

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 159/443 (35%), Positives = 248/443 (55%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V  TG +        +++F++  + + ++G  +   +  
Sbjct:   146 QELFSGGNTGINFEKY-DDIPVEATGSNCPPH----IENFSDIDMGEIIMGNIELTRYTR 200

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV---------GK 251
             P+P+Q HA P +   RD +  A+TGSGKT AF +P +  + ++  G+A+         G+
Sbjct:   201 PTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGR 260

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIY+          V+   VYGG     QI  L  G  +++ 
Sbjct:   261 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVA 320

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFS 366
             TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MFS
Sbjct:   321 TPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFS 380

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK 426
             AT+P E+  LA +++D   + + VG    + + ++ Q V  ++D  +   LL +L     
Sbjct:   381 ATFPKEIQMLARDFLDEY-IFLAVGRVG-STSENITQKVVWVEDLDKRSFLLDILGA--T 436

Query:   427 SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486
                +  LVF   +  AD LE+ L   G+   +IHG ++Q +R ++L  F+ G  P++VAT
Sbjct:   437 GSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 496

Query:   487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546
              VAARGLDI +V  VIN+  P   E+YVHRIGRTGR G  G++ +FF   N  +  +L++
Sbjct:   497 AVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLD 556

Query:   547 VLREARQVVPDAL--LKFGTHVK 567
             +L EA+Q VP  L  + +  H K
Sbjct:   557 LLVEAKQEVPSWLENMAYEHHYK 579


>WB|WBGene00008119 [details] [associations]
            symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
            HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
            OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
            ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
            EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
            UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
            NextBio:888300 Uniprot:Q93382
        Length = 811

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 144/365 (39%), Positives = 223/365 (61%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             ++ P+PIQ+ A P  L+GRD +GIAKTGSGKT A+  PA++H++     KA G+   P+ 
Sbjct:   285 YEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKA-GE--GPVA 341

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRS-GVDIVIGTPGRLI 316
             +++ PTRELA Q++       K   +  +C YGG SK  Q   L++ G ++V+ TPGR+I
Sbjct:   342 VIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQNEGAEMVVCTPGRII 401

Query:   317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKL 376
             DL++M   +    +F+V DEADRM DMGFE  V+ I   +   RQ +MFSAT+  +V +L
Sbjct:   402 DLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQCLMFSATFKQKVERL 461

Query:   377 AEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK-SQRNRVLVF 435
             A + +  +PV++V G E   AN D+ Q V V+  +++D +L  L+    + +   +VL+F
Sbjct:   462 ARDAL-VDPVRIVQG-EVGEANADIEQKVFVM--QNQDVKLHWLIRNLVEFASLGKVLIF 517

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                +L+++ +   L+   + +V +HG   Q ER ++L  F++ +  ++VATDVAARGLDI
Sbjct:   518 VTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRKKS-QILVATDVAARGLDI 576

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVV 555
              ++  VIN+      + +VHRIGRTGRAG KG ++T  T  +  + G LV  L    Q V
Sbjct:   577 SEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEMVGHLVKNLESVSQEV 636

Query:   556 PDALL 560
             P  L+
Sbjct:   637 PKPLM 641


>UNIPROTKB|Q90ZF6 [details] [associations]
            symbol:olvas "VASA" species:8090 "Oryzias latipes"
            [GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
            RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
            SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
        Length = 617

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 157/421 (37%), Positives = 240/421 (57%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLL 213
             F + DD  V V+G ++  A    + +F E+KL + +        +  P+P+Q +  P + 
Sbjct:   161 FDKYDDILVDVSGTNLPAA----IMTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIIS 216

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN-PLCLVLSPTRELADQIYD 272
              GRD +  A+TGSGKT AF +P +  ++++    +    +  P  ++++PTREL +QIY 
Sbjct:   217 AGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQ 276

Query:   273 VLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFV 332
                       V+ V VYGG +   Q+  +  G +++ GTPGRL+D+I      LS+V  +
Sbjct:   277 EARKFSFGTCVRPVVVYGGVNTGYQMREIEKGCNVLCGTPGRLLDMIGRGKVGLSKVRHL 336

Query:   333 VLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPNPVKV 388
             VLDEADRMLDMGFE  +R ++    +     RQ +MFSAT+P ++ +LA +++  + + V
Sbjct:   337 VLDEADRMLDMGFEPDMRRLVGSPGMPSKEERQTLMFSATFPEDIQRLAADFLKVDYLFV 396

Query:   389 VVGSEDLAANHDVMQ-IVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
              VG    A   DV Q  ++V     R+Q LL LL         R +VF   + +AD +  
Sbjct:   397 AVGVVGGACT-DVEQTFLQVTKFNKREQ-LLDLLRTIGSE---RTMVFVETKRQADFIAA 451

Query:   448 MLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507
              L +      +IHG + Q ER K+L+ F+ G CP++VAT VA+RGLDIPDV+ V+N+  P
Sbjct:   452 FLCQEKVPTTSIHGDREQREREKALADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLP 511

Query:   508 LTTEDYVHRIGRTGRAGKKGVSHTFFT-NHNKALAGELVNVLREARQVVPDALLK--FGT 564
              T +DYVHRIGRTGR G  G + +F+  + +  LA  LV +L +A+Q VP  L +  FG 
Sbjct:   512 NTIDDYVHRIGRTGRCGNTGRAVSFYDPDVDSQLARSLVGILAKAQQEVPSWLEESAFGA 571

Query:   565 H 565
             H
Sbjct:   572 H 572


>TIGR_CMR|CPS_1125 [details] [associations]
            symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
            ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
            KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
            BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
        Length = 466

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 142/348 (40%), Positives = 209/348 (60%)

Query:   182 FTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMH 239
             FT+  L + +L     K ++ PSPIQ+ A P +++GRD +  A+TG+GKT  F +P +  
Sbjct:     8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67

Query:   240 VLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQIT 299
              LS+ KG  V    N   L+L+PTRELA QI + +   GK   + S+ V+GG    PQI 
Sbjct:    68 -LSSSKGNKVSSN-NVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIA 125

Query:   300 ALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA 359
              LR GVD+++ TPGRL+DL        S++   +LDEADRMLDMGF   ++ +++ +   
Sbjct:   126 RLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKD 185

Query:   360 RQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLA 419
             RQ ++FSAT+  E+  LA+  ++ NP+++ V +E+  A      +  V  D+ R   +L 
Sbjct:   186 RQNLLFSATFSPEIRALAKGMVN-NPLEISVDAENSTAEKVTQWLTAV--DKKRKPAVLT 242

Query:   420 LLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT 479
              L K +  Q+  VLVF   +  A++L   L   G    AIHG K+Q  RTK+L+ FK+G+
Sbjct:   243 HLIKENNWQQ--VLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGS 300

Query:   480 CPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKG 527
               ++VATD+AARG+DI  +  V+N+  P   EDYVHRIGRT RAG  G
Sbjct:   301 VKILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTG 348


>RGD|2314437 [details] [associations]
            symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
            species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
            evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
            EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
            UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
            GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
        Length = 652

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 162/445 (36%), Positives = 250/445 (56%)

Query:   143 KESENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKN 200
             +E  +G +  I+F K  DD  V  TG +        +++F++ ++ + ++G  +   +  
Sbjct:   141 QELFSGGNAGINFEKY-DDIPVEATGNNCPPH----IENFSDVEMGEIIMGNIELTRYTR 195

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV---------GK 251
             P+P+Q HA P +   RD +  A+TGSG T AF +P +  + ++  G+A+         G+
Sbjct:   196 PTPVQKHAIPIIKEKRDLMACAQTGSGCTAAFLLPILSQIYTDGPGEALKAMKENGRYGR 255

Query:   252 RVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIG 310
             R   P+ LVL+PTRELA QIY+          V+   VYGG     QI  L  G  +++ 
Sbjct:   256 RKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVA 315

Query:   311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL----ARQMVMFS 366
             TPGRL+D++E     L    ++VLDEADRMLDMGFE  +R I+ + ++     R  +MFS
Sbjct:   316 TPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFS 375

Query:   367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIV--EVLDDRSRDQRLLALLEKY 424
             AT+P E+  LA +++D   + + VG     + +   ++V  E LD RS    LL LL   
Sbjct:   376 ATFPKEIQMLARDFLDEY-IFLAVGRVGSTSENITQKVVWVEELDKRSF---LLDLLNAT 431

Query:   425 HKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMV 484
              +   +  LVF   +  AD LEN L +  +   +IHG ++Q +R ++L  F+ G  P++V
Sbjct:   432 GRD--SLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILV 489

Query:   485 ATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGEL 544
             AT VAARGLDI +V+ VIN+  P   E+YVHRIGRTGR G  G++ +FF   N  +  +L
Sbjct:   490 ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDL 549

Query:   545 VNVLREARQVVPDAL--LKFGTHVK 567
             +++L EA+Q VP  L  + +  H K
Sbjct:   550 LDLLVEAKQEVPSWLESMAYEHHYK 574


>ZFIN|ZDB-GENE-990415-272 [details] [associations]
            symbol:vasa "vasa homolog" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
            HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
            EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
            ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
            GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
            NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
        Length = 716

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 160/421 (38%), Positives = 239/421 (56%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVL-GCCKN-FKNPSPIQSHAWPFLL 213
             F + DD  V V+G +      KA+ +F E+ L D +     K+ +  P+P+Q H  P + 
Sbjct:   257 FDKYDDILVDVSGSNPP----KAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIIS 312

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN-PLCLVLSPTRELADQIY- 271
              GRD +  A+TGSGKT AF +P +   +++    +    +  P  ++++PTREL +QIY 
Sbjct:   313 AGRDLMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYL 372

Query:   272 DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331
             +    A   C V+ V VYGG +    I  +  G +++  TPGRL DLI      LS+V +
Sbjct:   373 EARKFAYGTC-VRPVVVYGGINTGYTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRY 431

Query:   332 VVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPNPVK 387
             +VLDEADRMLDMGFE  +R +++   +     RQ +MFSAT+P ++ ++A +++  + + 
Sbjct:   432 LVLDEADRMLDMGFEPEMRKLVASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIF 491

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
             + VG    A + DV Q V  +D  S+  +LL LL     +   R +VF   +  AD +  
Sbjct:   492 LAVGVVGGACS-DVEQTVVQVDQYSKRDQLLELLRA---TGNERTMVFVETKRSADFIAT 547

Query:   448 MLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507
              L +      +IHG + Q ER K+LS F+ G CP++VAT VAARGLDI  V+ V+N+  P
Sbjct:   548 FLCQEKISTTSIHGDREQREREKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMP 607

Query:   508 LTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA-LAGELVNVLREARQVVPDAL--LKFGT 564
              + ++YVHRIGRTGR G  G + +FF   +   LA  LV VL  A+QVVP  L  + F  
Sbjct:   608 SSIDEYVHRIGRTGRCGNTGRAVSFFNPESDTPLARSLVKVLSGAQQVVPKWLEEVAFSA 667

Query:   565 H 565
             H
Sbjct:   668 H 668


>UNIPROTKB|D6RDK4 [details] [associations]
            symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
            UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
            GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
            ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
            Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
            Bgee:D6RDK4 Uniprot:D6RDK4
        Length = 704

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 165/452 (36%), Positives = 249/452 (55%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG-CCK-NFKNPSPIQSHAWPFLL 213
             F + D   V V+G D   A    + +F E+ L   +     K  +   +P+Q ++ P +L
Sbjct:   248 FDKYDTILVEVSGHDAPPA----ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIL 303

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN-PLCLVLSPTRELADQIY- 271
              GRD +  A+TGSGKT AF +P + H++ +    +  K +  P C++++PTREL +QIY 
Sbjct:   304 AGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYL 363

Query:   272 DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331
             +    +   C V++V +YGGT     I  +  G +I+  TPGRL+D+I      L ++ +
Sbjct:   364 EARKFSFGTC-VRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKY 422

Query:   332 VVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPNPVK 387
             +VLDEADRMLDMGF   ++ ++S   +     RQ +MFSAT+P E+ +LA E++  N + 
Sbjct:   423 LVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLF 482

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
             V VG     A  DV Q V  +   S+ ++L+ +L         R +VF   + +AD +  
Sbjct:   483 VAVGQVG-GACRDVQQTVLQVGQFSKREKLVEILRNIGDE---RTMVFVETKKKADFIAT 538

Query:   448 MLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507
              L +      +IHG + Q ER ++L  F+ G CP++VAT VAARGLDI +V+ VIN+  P
Sbjct:   539 FLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLP 598

Query:   508 LTTEDYVHRIGRTGRAGKKGVSHTFFT-NHNKALAGELVNVLREARQVVPDAL--LKFGT 564
              T ++YVHRIGRTGR G  G + +FF    +  LA  LV VL +A+Q VP  L  + F T
Sbjct:   599 STIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFST 658

Query:   565 HVKKKESKLYGAHFREISADAPKAKKITFNNS 596
             ++        G  F   S D  K K  T N +
Sbjct:   659 YIPGFSGSTRGNVFA--SVDTRKGKS-TLNTA 687


>UNIPROTKB|Q9NQI0 [details] [associations]
            symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
            "multicellular organismal development" evidence=IEA] [GO:0000237
            "leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
            "spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
            localization" evidence=IEA] [GO:0033391 "chromatoid body"
            evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
            evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
            [GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
            GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
            GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
            OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
            EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
            IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
            RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
            ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
            PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
            PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
            Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
            KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
            GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
            HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
            InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
            NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
            Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
            Uniprot:Q9NQI0
        Length = 724

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 165/452 (36%), Positives = 249/452 (55%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG-CCK-NFKNPSPIQSHAWPFLL 213
             F + D   V V+G D   A    + +F E+ L   +     K  +   +P+Q ++ P +L
Sbjct:   268 FDKYDTILVEVSGHDAPPA----ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIL 323

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN-PLCLVLSPTRELADQIY- 271
              GRD +  A+TGSGKT AF +P + H++ +    +  K +  P C++++PTREL +QIY 
Sbjct:   324 AGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYL 383

Query:   272 DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331
             +    +   C V++V +YGGT     I  +  G +I+  TPGRL+D+I      L ++ +
Sbjct:   384 EARKFSFGTC-VRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKY 442

Query:   332 VVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPNPVK 387
             +VLDEADRMLDMGF   ++ ++S   +     RQ +MFSAT+P E+ +LA E++  N + 
Sbjct:   443 LVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLF 502

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
             V VG     A  DV Q V  +   S+ ++L+ +L         R +VF   + +AD +  
Sbjct:   503 VAVGQVG-GACRDVQQTVLQVGQFSKREKLVEILRNIGDE---RTMVFVETKKKADFIAT 558

Query:   448 MLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507
              L +      +IHG + Q ER ++L  F+ G CP++VAT VAARGLDI +V+ VIN+  P
Sbjct:   559 FLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLP 618

Query:   508 LTTEDYVHRIGRTGRAGKKGVSHTFFT-NHNKALAGELVNVLREARQVVPDAL--LKFGT 564
              T ++YVHRIGRTGR G  G + +FF    +  LA  LV VL +A+Q VP  L  + F T
Sbjct:   619 STIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFST 678

Query:   565 HVKKKESKLYGAHFREISADAPKAKKITFNNS 596
             ++        G  F   S D  K K  T N +
Sbjct:   679 YIPGFSGSTRGNVFA--SVDTRKGKS-TLNTA 707


>TIGR_CMR|CPS_2658 [details] [associations]
            symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
            ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
            PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
            Uniprot:Q480Z7
        Length = 399

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 142/362 (39%), Positives = 215/362 (59%)

Query:   196 KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKG-KAVGKRVN 254
             K +K P+PIQ    P L+NG D +GIA+TG+GKT AF +P +     N+   KA   R  
Sbjct:    20 KGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINKFGRNKIDIKAKSTR-- 77

Query:   255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGR 314
                L+L+PTRELA QI   ++D     G+K+  VYGG  +Q Q+ ++  G+DI++ TPGR
Sbjct:    78 --SLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLDILVATPGR 135

Query:   315 LIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVH 374
             L+DLIE    +   +   VLDEAD MLDMGF + V+ I+SK+  +RQ ++FSAT P E+ 
Sbjct:   136 LLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTLLFSATMPAEIE 195

Query:   375 KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLV 434
              LAE  +  +P K+ + +E +  +  V Q V  LD  ++   L  +L K   +   +VL+
Sbjct:   196 ILAEAILT-DPTKIQITAETVTIDL-VNQSVYHLDKSNKVPLLFNILTK---ADYEKVLI 250

Query:   435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494
             F   +  AD +   L ++     ++H  K Q  R ++L  FK+ T  ++VATDVAARG+D
Sbjct:   251 FCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLVATDVAARGID 310

Query:   495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQV 554
             + ++ +VINY+ P    +Y+HRIGRT RAGK G++ +F   ++     +L N+     QV
Sbjct:   311 VDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVEND---IRQLTNIENSIGQV 367

Query:   555 VP 556
             +P
Sbjct:   368 IP 369


>UNIPROTKB|Q4R5S7 [details] [associations]
            symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
            species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
            "piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
            GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
            ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
        Length = 725

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 166/448 (37%), Positives = 248/448 (55%)

Query:   153 ISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG-CCK-NFKNPSPIQSHAWP 210
             ISF K  D   V V+G D   A    + +F E+ L   +     K  +   +P+Q ++ P
Sbjct:   267 ISFDKY-DTILVEVSGHDAPPA----ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIP 321

Query:   211 FLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN-PLCLVLSPTRELADQ 269
              +L GRD +  A+TGSGKT AF +P + H++ +    +  K +  P C++++PTREL +Q
Sbjct:   322 IILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQ 381

Query:   270 IY-DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSE 328
             IY +    +   C V++V +YGGT     I  +  G +I+  TPGRL+D+I      L +
Sbjct:   382 IYLEARKFSFGTC-VRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQ 440

Query:   329 VSFVVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPN 384
             + ++VLDEADRMLDMGF   ++ ++S   +     RQ +MFSAT+P E+ +LA E++  N
Sbjct:   441 IKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSN 500

Query:   385 PVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADR 444
              + V VG     A  DV Q V  +   S+ ++L+ +L         R +VF   + +AD 
Sbjct:   501 YLFVAVGQVG-GACRDVQQTVLQVGQFSKREKLVEILRNIGDE---RTMVFVETKKKADF 556

Query:   445 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINY 504
             +   L +      +IHG + Q ER ++L  F+ G CP++VAT VAARGLDI +V+ VIN+
Sbjct:   557 IATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINF 616

Query:   505 SFPLTTEDYVHRIGRTGRAGKKGVSHTFFT-NHNKALAGELVNVLREARQVVPDAL--LK 561
               P T ++YVHRIGRTGR G  G + +FF    +  LA  LV VL +A+Q VP  L  + 
Sbjct:   617 DLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIA 676

Query:   562 FGTHVKKKESKLYGAHFREISADAPKAK 589
             F T++        G  F   S D  K K
Sbjct:   677 FSTYIPGFSGSTRGNVFA--SVDTRKGK 702


>UNIPROTKB|Q83DM8 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
            RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
            KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
            BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
        Length = 420

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 144/365 (39%), Positives = 219/365 (60%)

Query:   196 KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255
             + +  P+P+Q  A P +L  RD +  A+TG+GKT  F +P +  +  +R    + +   P
Sbjct:    28 QGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRP--PLQRSAKP 85

Query:   256 L--CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPG 313
             +   L+L+PTRELA Q+++ +   GK   +K+  V+GG S +PQI  LR GVDI++ TPG
Sbjct:    86 VIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVATPG 145

Query:   314 RLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEV 373
             RL+DL+   V +LS V F VLDEADRMLDMGF   +R IL  +  +RQ ++FSAT+  E+
Sbjct:   146 RLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSATFSKEI 205

Query:   374 HKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVL 433
              +L ++ +  +P  + V   + AA   +  +V  +D R R + LL+ +    K+ R +VL
Sbjct:   206 KELTDKLLH-SPALIEVARRNTAAAR-ITHVVHPVD-RQRKRELLSFMIG-SKNWR-QVL 260

Query:   434 VFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGL 493
             VF   +  A+RL   L   G    AIHG K+Q  R ++L+ FK+G   ++VATDVAARGL
Sbjct:   261 VFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDVAARGL 320

Query:   494 DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREA-- 551
             DI  +  VIN+  P   +DYVHR+GRTGRA   GV+ +  +     L  ++  +L+    
Sbjct:   321 DIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLLQSKMP 380

Query:   552 RQVVP 556
             ++V+P
Sbjct:   381 QEVIP 385


>TIGR_CMR|CBU_0670 [details] [associations]
            symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
            putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
            GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
            ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
            Uniprot:Q83DM8
        Length = 420

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 144/365 (39%), Positives = 219/365 (60%)

Query:   196 KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255
             + +  P+P+Q  A P +L  RD +  A+TG+GKT  F +P +  +  +R    + +   P
Sbjct:    28 QGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRP--PLQRSAKP 85

Query:   256 L--CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPG 313
             +   L+L+PTRELA Q+++ +   GK   +K+  V+GG S +PQI  LR GVDI++ TPG
Sbjct:    86 VIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVATPG 145

Query:   314 RLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEV 373
             RL+DL+   V +LS V F VLDEADRMLDMGF   +R IL  +  +RQ ++FSAT+  E+
Sbjct:   146 RLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSATFSKEI 205

Query:   374 HKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVL 433
              +L ++ +  +P  + V   + AA   +  +V  +D R R + LL+ +    K+ R +VL
Sbjct:   206 KELTDKLLH-SPALIEVARRNTAAAR-ITHVVHPVD-RQRKRELLSFMIG-SKNWR-QVL 260

Query:   434 VFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGL 493
             VF   +  A+RL   L   G    AIHG K+Q  R ++L+ FK+G   ++VATDVAARGL
Sbjct:   261 VFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDVAARGL 320

Query:   494 DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREA-- 551
             DI  +  VIN+  P   +DYVHR+GRTGRA   GV+ +  +     L  ++  +L+    
Sbjct:   321 DIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLLQSKMP 380

Query:   552 RQVVP 556
             ++V+P
Sbjct:   381 QEVIP 385


>UNIPROTKB|Q6GWX0 [details] [associations]
            symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
            species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
            "piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
            [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
            GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
            GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
            ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
            KEGG:ssc:431672 Uniprot:Q6GWX0
        Length = 722

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 165/452 (36%), Positives = 248/452 (54%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG-CCK-NFKNPSPIQSHAWPFLL 213
             F + D   V V+G D   A    + +F E+ L   +     K  +   +P+Q ++ P +L
Sbjct:   266 FDKYDTILVEVSGHDAPPA----ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIL 321

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN-PLCLVLSPTRELADQIY- 271
              GRD +  A+TGSGKT AF +P + H++ +    +  K +  P C++++PTREL +QIY 
Sbjct:   322 AGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYL 381

Query:   272 DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331
             +    +   C V++V +YGGT     I  +  G +I+  TPGRL+D+I      L ++ +
Sbjct:   382 EARKFSFGTC-VRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKY 440

Query:   332 VVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPNPVK 387
             +VLDEADRMLDMGF   ++ ++S   +     RQ +MFSAT+P E+ +LA E++  N + 
Sbjct:   441 LVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLF 500

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
             V VG     A  DV Q    +   S+ ++LL +L         R +VF   + +AD +  
Sbjct:   501 VAVGQVG-GACRDVQQADLQVGQYSKREKLLEILRNIGDE---RTMVFVETKKKADFIAT 556

Query:   448 MLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507
              L +      +IHG + Q ER ++L  F+ G CP++VAT VAARGLDI +V+ VIN+  P
Sbjct:   557 FLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLP 616

Query:   508 LTTEDYVHRIGRTGRAGKKGVSHTFFT-NHNKALAGELVNVLREARQVVPDAL--LKFGT 564
              T ++YVHRIGRTGR G  G + +FF    +  LA  LV VL +A+Q VP  L  + F T
Sbjct:   617 STIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFST 676

Query:   565 HVKKKESKLYGAHFREISADAPKAKKITFNNS 596
             ++        G  F   S D  K K  T N +
Sbjct:   677 YIPGFSGSTRGNVFA--SVDTRKGKS-TLNTA 705


>TIGR_CMR|SO_3783 [details] [associations]
            symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
            RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
            KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
            Uniprot:Q8EAV8
        Length = 535

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 144/362 (39%), Positives = 219/362 (60%)

Query:   196 KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255
             + +  PSPIQ+ A P +L G+D +  A+TG+GKT  F +P +  +    K K+   R   
Sbjct:    19 QGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLAKGHKAKSGQTRA-- 76

Query:   256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL 315
               LVL+PTRELA Q+ + +   GK   ++S  V+GG    PQI  LR GVD+++ TPGRL
Sbjct:    77 --LVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGVDVLVATPGRL 134

Query:   316 IDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHK 375
             +DL++ N    +++  +VLDEADRMLDMGF   ++ IL+ +   RQ +MFSAT+  E+ +
Sbjct:   135 LDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFSATFSDEIRE 194

Query:   376 LAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVF 435
             LA+  ++ +PV++ V   + AA   V Q +  +D   +   L+ L+++ +  Q   VLVF
Sbjct:   195 LAKGLVN-HPVEISVTPRNAAAT-TVKQWICPVDKTQKSALLIQLIKQENWQQ---VLVF 249

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
             +  +  A+RL   L ++     AIHG K+Q  RTK+L+ FK G   ++VATD+AARGLDI
Sbjct:   250 SRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDI 309

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGE---LVNVLREAR 552
               +  V+N+  P   EDYVHRIGRTGRAG  G + +  ++    L  +   L+N + E +
Sbjct:   310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIERLINRVLERQ 369

Query:   553 QV 554
             +V
Sbjct:   370 EV 371


>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
            symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
            IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
            Uniprot:F1QQ09
        Length = 473

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 154/392 (39%), Positives = 224/392 (57%)

Query:   179 LKSFTESKLPDDVL-GCCKN-FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             +KSF E K P  +L G  K    +P+PIQ    P +L+GRD IGIA TGSGKT+ F +P 
Sbjct:    36 IKSFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPI 95

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYD--------VLNDAGKPCGVKSVCV 288
             +M  L   K     KR  P  L++ P+  +A   +         +L D G P    ++C+
Sbjct:    96 IMFCLEQEKRLPFCKREGPYGLIICPSVNVAKHTHHGIIEYYCKLLEDEGAPQMRCALCI 155

Query:   289 YGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEP 348
              GG S + Q+  ++      + TPGRL+DL+   +  L    ++ LDEADRM+DMGFEE 
Sbjct:   156 -GGMSVKEQMEVVK------LATPGRLMDLLNKKMVSLDICRYLALDEADRMIDMGFEED 208

Query:   349 VRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVL 408
             +R I S     RQ ++FSAT P ++   A+  +   P+ + VG    AA+ DV+Q VE +
Sbjct:   209 IRTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL-VKPITINVGRAG-AASLDVIQEVEYV 266

Query:   409 DDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHER 468
              + ++   LL  L+K        VL+FA  + + D +   L   G + VAIHG K Q ER
Sbjct:   267 KEEAKMVYLLECLQKTPPP----VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEER 322

Query:   469 TKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGV 528
             TK++  FKEG   ++VATDVA++GLD P ++ V+NY  P   E+YVHRIGRTGR+GK G+
Sbjct:   323 TKAIEAFKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGI 382

Query:   529 SHTFFTNH-NKALAGELVNVLREARQVVPDAL 559
             + TF     ++++  +L  +L EA+Q VP  L
Sbjct:   383 ATTFINKGCDESVLMDLKALLVEAKQKVPPVL 414


>UNIPROTKB|E2RMU5 [details] [associations]
            symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
            evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
            [GO:0032880 "regulation of protein localization" evidence=IEA]
            [GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
            "spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
            "leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
            GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
            OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
            Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
        Length = 728

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 163/452 (36%), Positives = 247/452 (54%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG-CCK-NFKNPSPIQSHAWPFLL 213
             F + D   V V+G D   A    + +F E+ L   +     K  +   +P+Q ++ P +L
Sbjct:   269 FDKYDTILVEVSGHDAPPA----ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIL 324

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN-PLCLVLSPTRELADQIY- 271
              GRD +  A+TGSGKT AF +P + H++ +    +  K +  P C++++PTREL +QIY 
Sbjct:   325 AGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELINQIYL 384

Query:   272 DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331
             +    +   C V++V +YGGT     I  +  G +I+  TPGRL+D+I      L +V +
Sbjct:   385 EARKFSFGTC-VRAVVIYGGTQLGYSIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKY 443

Query:   332 VVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPNPVK 387
             +VLDEADRMLDMGF   ++ ++S   +     RQ +MFSAT+P E+ +LA E++  N + 
Sbjct:   444 LVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLF 503

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
             V VG     A  DV Q +  +   S+ ++L+ +L         R +VF   + +AD +  
Sbjct:   504 VAVGQVG-GACRDVQQTILQVGQYSKREKLVEILRSIGDE---RTMVFVETKKKADFIAT 559

Query:   448 MLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507
              L +      +IHG + Q ER ++L  F+ G CP++VAT VAARGLDI +V+ VIN+  P
Sbjct:   560 FLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLP 619

Query:   508 LTTEDYVHRIGRTGRAGKKGVSHTFFT-NHNKALAGELVNVLREARQVVPDAL--LKFGT 564
              T ++YVHRIGRTGR G  G + +FF    +  LA  LV VL +A+Q VP  L  + F T
Sbjct:   620 STIDEYVHRIGRTGRCGNTGRAISFFDPESDNHLAQPLVKVLSDAQQDVPAWLEEIAFST 679

Query:   565 HVKKKESKLYGAHFREISADAPKAKKITFNNS 596
             +V        G  F  +        K T N +
Sbjct:   680 YVPGFSGSSRGNVFASVDTRKNYQGKSTLNTA 711


>UNIPROTKB|Q91372 [details] [associations]
            symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
            species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
            "nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
            [GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
            evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
            "mitochondrial cloud" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
            GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
            GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
            GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
            UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
            KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
        Length = 700

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 153/423 (36%), Positives = 242/423 (57%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLL 213
             F + D+  V VTGKDV  A    + +F E+ L + +        +   +P+Q H+ P ++
Sbjct:   254 FDKYDEILVDVTGKDVPPA----ILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIM 309

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN---PLCLVLSPTRELADQI 270
              GRD +  A+TGSGKT AF +P + ++++  +G    + +    P  ++++PTREL +QI
Sbjct:   310 AGRDLMACAQTGSGKTAAFLLPILSYMMN--EGITASQYLQLQEPEAIIIAPTRELINQI 367

Query:   271 Y-DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEV 329
             Y D    +   C V+ V VYGG      +  +  G +I+  TPGRL+D++      LS++
Sbjct:   368 YLDARKFSYGTC-VRPVVVYGGIQPVHAMRDVEKGCNILCATPGRLLDIVSKEKIGLSKL 426

Query:   330 SFVVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPNP 385
              ++VLDEADRMLDMGF   +  +++K  +     RQ +MFSAT+P E+ +LA  Y+    
Sbjct:   427 RYLVLDEADRMLDMGFAPEIEKLMTKPGMPTKEKRQTLMFSATYPEEIRRLASNYLKSEH 486

Query:   386 VKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRL 445
             + VVVG    A + DV Q V  + +  + ++LL +L+    S++ R ++F   + +AD +
Sbjct:   487 LFVVVGLVGGACS-DVAQTVLEMRENGKMEKLLEILKS---SEKERTMIFVNTKKKADFI 542

Query:   446 ENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYS 505
                L +  +   +IHG + Q++R  +L  F+ G C ++V T VAARGLDI +V+ VINY 
Sbjct:   543 AGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYD 602

Query:   506 FPLTTEDYVHRIGRTGRAGKKGVSHTFFT-NHNKALAGELVNVLREARQVVPDAL--LKF 562
              P   ++YVHRIGRTGR G  G + +FF    +  +A  LV +L +A Q VP  L  + F
Sbjct:   603 VPKEVDEYVHRIGRTGRCGNTGKATSFFNVQDDHVIARPLVKILTDAHQEVPAWLEEIAF 662

Query:   563 GTH 565
             G H
Sbjct:   663 GGH 665


>UNIPROTKB|Q9KLH6 [details] [associations]
            symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
            family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
            N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
            OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
            DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
            ProtClustDB:CLSK869757 Uniprot:Q9KLH6
        Length = 422

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 153/363 (42%), Positives = 213/363 (58%)

Query:   200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNR-KGKAVGKRVNPLCL 258
             NP+PIQ  A P +L G+D +  A+TG+GKT AFG+P +   +    + +A  K +  L L
Sbjct:    28 NPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSKEIRALVL 87

Query:   259 VLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDL 318
             V  PTRELA Q+ D L    K   +K V VYGGTS + Q+  LR GVDI+I TPGRL+D 
Sbjct:    88 V--PTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDH 145

Query:   319 IEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAE 378
               +    L +V  +VLDEADRMLDMGF   ++ +L ++S  RQ + FSAT+  ++  +A 
Sbjct:   146 AHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSKIKAVAY 205

Query:   379 EYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALY 438
               M  +P++V V   +  A   V Q+V  +D + R + LL+ L      Q+  VLVF   
Sbjct:   206 RIMR-DPIEVQVTPSNSTAE-TVQQMVYPVD-KKRKRELLSYLIGSKNWQQ--VLVFTKT 260

Query:   439 QLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDV 498
             +  +D L   L+  G K V+I+G K+Q  R K+L  FK G    ++ATDVAARGLDI  +
Sbjct:   261 RQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQL 320

Query:   499 EVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDA 558
             E V+NY  P   EDYVHRIGRTGRAG  G++ +  + H++    E +  L   R  +P  
Sbjct:   321 EQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLS-HDEQPQLEAIERLLNTR--LPQE 377

Query:   559 LLK 561
              LK
Sbjct:   378 WLK 380


>TIGR_CMR|VC_A0768 [details] [associations]
            symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
            OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
            DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
            ProtClustDB:CLSK869757 Uniprot:Q9KLH6
        Length = 422

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 153/363 (42%), Positives = 213/363 (58%)

Query:   200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNR-KGKAVGKRVNPLCL 258
             NP+PIQ  A P +L G+D +  A+TG+GKT AFG+P +   +    + +A  K +  L L
Sbjct:    28 NPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSKEIRALVL 87

Query:   259 VLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDL 318
             V  PTRELA Q+ D L    K   +K V VYGGTS + Q+  LR GVDI+I TPGRL+D 
Sbjct:    88 V--PTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDH 145

Query:   319 IEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAE 378
               +    L +V  +VLDEADRMLDMGF   ++ +L ++S  RQ + FSAT+  ++  +A 
Sbjct:   146 AHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSKIKAVAY 205

Query:   379 EYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALY 438
               M  +P++V V   +  A   V Q+V  +D + R + LL+ L      Q+  VLVF   
Sbjct:   206 RIMR-DPIEVQVTPSNSTAE-TVQQMVYPVD-KKRKRELLSYLIGSKNWQQ--VLVFTKT 260

Query:   439 QLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDV 498
             +  +D L   L+  G K V+I+G K+Q  R K+L  FK G    ++ATDVAARGLDI  +
Sbjct:   261 RQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQL 320

Query:   499 EVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDA 558
             E V+NY  P   EDYVHRIGRTGRAG  G++ +  + H++    E +  L   R  +P  
Sbjct:   321 EQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLS-HDEQPQLEAIERLLNTR--LPQE 377

Query:   559 LLK 561
              LK
Sbjct:   378 WLK 380


>POMBASE|SPCC63.11 [details] [associations]
            symbol:prp28 "U5 snRNP-associated protein Prp28
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
            "cis assembly of pre-catalytic spliceosome" evidence=ISS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
            GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
            GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
            OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
            ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
            GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
        Length = 662

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 149/384 (38%), Positives = 216/384 (56%)

Query:   197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPL 256
             N+K PS IQ  A P LL  +D IGIA+TGSGKT AF +P ++ +            + P 
Sbjct:   268 NYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPY 327

Query:   257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
              +VL+PTRELA QI    N   +P G + V V GG + + Q   +  G  IV+ TPGRL+
Sbjct:   328 AVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLL 387

Query:   317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI-------------------S 357
             D +E  +  LS+ ++VV+DEADRMLDMGFE+ V  ILS +                   S
Sbjct:   388 DCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSS 447

Query:   358 LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD-QR 416
               RQ +MFSAT P  V  LA+ Y+   PV + +G+   A +  V Q VE++ D S+  +R
Sbjct:   448 SRRQTIMFSATLPPRVANLAKSYLI-EPVMLTIGNIGQAVDR-VEQRVEMISDDSKKWRR 505

Query:   417 LLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFK 476
             +  +LE    S    +++F   +   + +   L   GW  V +HG K+Q +R +++   +
Sbjct:   506 VEEILESNRFSPP--IIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLR 563

Query:   477 EGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNH 536
               T  ++VATD+A RG+DIP+V +V+NY+   + EDY HRIGRTGRAGK G + TF    
Sbjct:   564 NKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPE 623

Query:   537 NKALAGEL-VNVLREARQVVPDAL 559
             +  +  +L V + R A+  +PD L
Sbjct:   624 DTDVYYDLRVLLSRSAKAHIPDEL 647

 Score = 356 (130.4 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 82/200 (41%), Positives = 118/200 (59%)

Query:   159 EDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGR 216
             ++D  + + G D+       L+++ E+ LP ++L   K  N+K PS IQ  A P LL  +
Sbjct:   232 KEDYNISIKGDDLPNP----LRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287

Query:   217 DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276
             D IGIA+TGSGKT AF +P ++ +            + P  +VL+PTRELA QI    N 
Sbjct:   288 DLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNK 347

Query:   277 AGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDE 336
               +P G + V V GG + + Q   +  G  IV+ TPGRL+D +E  +  LS+ ++VV+DE
Sbjct:   348 FAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDE 407

Query:   337 ADRMLDMGFEEPVRFILSKI 356
             ADRMLDMGFE+ V  ILS +
Sbjct:   408 ADRMLDMGFEDDVNKILSSL 427


>MGI|MGI:102670 [details] [associations]
            symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
            evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
            [GO:0032880 "regulation of protein localization" evidence=IMP]
            [GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
            part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
            evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
            "piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
            GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
            GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
            HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
            EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
            UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
            PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
            REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
            Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
            UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
            CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
            Uniprot:Q61496
        Length = 702

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 162/454 (35%), Positives = 251/454 (55%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG-CCK-NFKNPSPIQSHAWPFLL 213
             F + D   V V+G D   A    + +F E+ L   +     K  +   +P+Q ++ P +L
Sbjct:   241 FDKYDTILVEVSGHDAPPA----ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVL 296

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN-PLCLVLSPTRELADQIY- 271
              GRD +  A+TGSGKT AF +P + H++ +    +  K +  P C++++PTREL +QIY 
Sbjct:   297 AGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYL 356

Query:   272 DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331
             +    +   C V++V +YGGT     +  +  G +I+  TPGRL+D+I      L +V +
Sbjct:   357 EARKFSFGTC-VRAVVIYGGTQFGHSVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKY 415

Query:   332 VVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPNPVK 387
             +VLDEADRMLDMGF   ++ ++S   +     RQ ++FSAT+P E+ +LA +++  + + 
Sbjct:   416 LVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLF 475

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
             V VG     A  DV Q +  +   S+ ++L+ +L         R +VF   + +AD +  
Sbjct:   476 VAVGQVG-GACRDVQQTILQVGQYSKREKLVEILRNIGDE---RTMVFVETKKKADFIAT 531

Query:   448 MLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507
              L +      +IHG + Q ER ++L  F+ G CP++VAT VAARGLDI +V+ VIN+  P
Sbjct:   532 FLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLP 591

Query:   508 LTTEDYVHRIGRTGRAGKKGVSHTFF-TNHNKALAGELVNVLREARQVVPDAL--LKFGT 564
              T ++YVHRIGRTGR G  G + +FF T+ +  LA  LV VL +A+Q VP  L  + F T
Sbjct:   592 STIDEYVHRIGRTGRCGNTGRAISFFDTDSDNHLAQPLVKVLSDAQQDVPAWLEEIAFST 651

Query:   565 HVKKK--ESKLYGAHFREISADAPKAKKITFNNS 596
             +V      S   GA F  +        K T N +
Sbjct:   652 YVPPSFSSSTRGGAVFASVDTRKNYQGKHTLNTA 685


>UNIPROTKB|D4ADV9 [details] [associations]
            symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
            Uniprot:D4ADV9
        Length = 674

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 154/410 (37%), Positives = 235/410 (57%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG-CCK-NFKNPSPIQSHAWPFLL 213
             F + D   V V+G D   A    + +F E+ L   +     K  +   +P+Q ++ P +L
Sbjct:   242 FDKYDTILVEVSGHDAPPA----ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVL 297

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN-PLCLVLSPTRELADQIY- 271
              GRD +  A+TGSGKT AF +P + H++ +    +  K +  P C++++PTREL +QIY 
Sbjct:   298 AGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYL 357

Query:   272 DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331
             +    +   C V++V +YGGT     I  +  G +I+  TPGRL+D+I      L +V +
Sbjct:   358 EARKFSFGTC-VRAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKY 416

Query:   332 VVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPNPVK 387
             +VLDEADRMLDMGF   ++ ++S   +     RQ ++FSAT+P E+ +LA E++  N + 
Sbjct:   417 LVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLF 476

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
             V VG     A  DV Q +  +   S+ ++L+ +L         R +VF   + +AD +  
Sbjct:   477 VAVGQVG-GACRDVQQSILQVGQYSKREKLVEILRNIGDE---RTMVFVETKKKADFIAT 532

Query:   448 MLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507
              L +      +IHG + Q ER ++L  F+ G CP++VAT VAARGLDI +V+ VIN+  P
Sbjct:   533 FLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLP 592

Query:   508 LTTEDYVHRIGRTGRAGKKGVSHTFF-TNHNKALAGELVNVLREARQVVP 556
              T ++YVHRIGRTGR G  G + +FF T  +  LA  LV VL +A+Q VP
Sbjct:   593 STIDEYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVP 642


>TAIR|locus:504955106 [details] [associations]
            symbol:emb1138 "embryo defective 1138" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
            "chloroplast envelope" evidence=IDA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
            GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
            SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
            EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
            EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
            EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
            IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
            RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
            SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
            EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
            GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
            PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
            Uniprot:Q8L7S8
        Length = 748

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 144/339 (42%), Positives = 201/339 (59%)

Query:   203 PIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN--PLCLVL 260
             PIQ       L GRD I  AKTG+GKT+AFG+P +  +          +R    P  LVL
Sbjct:   127 PIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVL 186

Query:   261 SPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIE 320
             +PTRELA Q+   + ++  P  + +VCVYGG S   Q +AL  GVD+V+GTPGR+IDLIE
Sbjct:   187 APTRELAKQVEKEIKESA-PY-LSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIE 244

Query:   321 MNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEY 380
                  L EV ++VLDEAD+ML +GFEE V  IL  +   RQ ++FSAT P  V KLA +Y
Sbjct:   245 GRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKY 304

Query:   381 MDPNPVKV-VVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQ 439
             +D NP+ + +VG +D      +          S+   L  L+  Y K    + +VF   +
Sbjct:   305 LD-NPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKG--GKTIVFTQTK 361

Query:   440 LEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVE 499
              +AD +   L  S     A+HG  +QH+R ++L+ F++G   ++VATDVA+RGLDIP+V+
Sbjct:   362 RDADEVSLALSNS-IATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVD 420

Query:   500 VVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNK 538
             +VI+Y  P   E +VHR GRTGRAGK+G +    T+  K
Sbjct:   421 LVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQK 459


>TIGR_CMR|GSU_0914 [details] [associations]
            symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
            GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
            ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
            PATRIC:22024603 ProtClustDB:CLSK924451
            BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
        Length = 447

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 135/343 (39%), Positives = 207/343 (60%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             ++ P+PIQ+ A P ++ GRD +G+A+TG+GKT AF +P ++H L        G+R     
Sbjct:    21 YETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALP-ILHRLQQ------GERGRVRA 73

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             LV++PTRELA+QI D     G+   ++SV VYGG    PQ+  L++G ++V+  PGRL+D
Sbjct:    74 LVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVACPGRLLD 133

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              I      LS +  +VLDEAD+M DMGF   +R +L  +   RQ ++FSAT PI++  LA
Sbjct:   134 HIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATMPIDIRTLA 193

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFAL 437
             ++ +  +PV V VG+  +A    V   +  ++   +   LL LL   H    + VL+F  
Sbjct:   194 QDIL-VDPVTVQVGT--VAPAVTVAHALYPVEQHLKTPLLLELLR--HTDTES-VLIFTR 247

Query:   438 YQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497
              +  A RL   L ++G++  ++ G  +Q+ R  +L  F++GT  ++VATD+AARG+D+  
Sbjct:   248 TKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGIDVSQ 307

Query:   498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKAL 540
             V  VINY  P T E Y+HRIGRTGRA + G + T  T+ + A+
Sbjct:   308 VSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAM 350


>UNIPROTKB|Q9KMW4 [details] [associations]
            symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
            RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
            GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
            ProtClustDB:CLSK869561 Uniprot:Q9KMW4
        Length = 451

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 155/397 (39%), Positives = 225/397 (56%)

Query:   196 KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255
             K +  PSPIQ  A P +L G+D +  A+TG+GKT  F +P ++ +L+  KG  V  R N 
Sbjct:    19 KGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLP-ILELLA--KGPKV--RANQ 73

Query:   256 L-CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGR 314
             +  L+L+PTRELA QI D +   G+   +KS  V+GG    PQ+  +  G DI++ TPGR
Sbjct:    74 VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVATPGR 133

Query:   315 LIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVH 374
             L+DL   N     ++  +VLDEADRMLDMGF   +  IL  +   RQ ++FSAT+  E+ 
Sbjct:   134 LMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATFSTEIR 193

Query:   375 KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLV 434
             +LA+  ++ NPV++ V   +  A   V Q +   D + +   L+ L+++ +  Q   VLV
Sbjct:   194 ELAKGLVN-NPVEISVSPANSTAR-TVEQCIYPADVKKKPDMLVKLVKEGNWQQ---VLV 248

Query:   435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494
             F   +  A+RL   L   G    AIHG K+Q  RT++L+ FK G   ++VATD+AARG+D
Sbjct:   249 FMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGID 308

Query:   495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQV 554
             IP +  V+N+  P   EDYVHRIGRTGRAG+ G + +  +      A EL  + R  + +
Sbjct:   309 IPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIE---APELFAIERLTQAL 365

Query:   555 VPDA-LLKFGTHVKKKESKLYGAHFREISADAPKAKK 590
             +P   L  F    +  ESKL     R +    PK  K
Sbjct:   366 LPRVNLAGFEPTNQLPESKL---DTRPLKPKKPKKPK 399


>TIGR_CMR|VC_A0204 [details] [associations]
            symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
            RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
            GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
            ProtClustDB:CLSK869561 Uniprot:Q9KMW4
        Length = 451

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 155/397 (39%), Positives = 225/397 (56%)

Query:   196 KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255
             K +  PSPIQ  A P +L G+D +  A+TG+GKT  F +P ++ +L+  KG  V  R N 
Sbjct:    19 KGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLP-ILELLA--KGPKV--RANQ 73

Query:   256 L-CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGR 314
             +  L+L+PTRELA QI D +   G+   +KS  V+GG    PQ+  +  G DI++ TPGR
Sbjct:    74 VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVATPGR 133

Query:   315 LIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVH 374
             L+DL   N     ++  +VLDEADRMLDMGF   +  IL  +   RQ ++FSAT+  E+ 
Sbjct:   134 LMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATFSTEIR 193

Query:   375 KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLV 434
             +LA+  ++ NPV++ V   +  A   V Q +   D + +   L+ L+++ +  Q   VLV
Sbjct:   194 ELAKGLVN-NPVEISVSPANSTAR-TVEQCIYPADVKKKPDMLVKLVKEGNWQQ---VLV 248

Query:   435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494
             F   +  A+RL   L   G    AIHG K+Q  RT++L+ FK G   ++VATD+AARG+D
Sbjct:   249 FMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGID 308

Query:   495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQV 554
             IP +  V+N+  P   EDYVHRIGRTGRAG+ G + +  +      A EL  + R  + +
Sbjct:   309 IPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIE---APELFAIERLTQAL 365

Query:   555 VPDA-LLKFGTHVKKKESKLYGAHFREISADAPKAKK 590
             +P   L  F    +  ESKL     R +    PK  K
Sbjct:   366 LPRVNLAGFEPTNQLPESKL---DTRPLKPKKPKKPK 399


>UNIPROTKB|F1MYC6 [details] [associations]
            symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
            species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
            cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
            evidence=IEA] [GO:0032880 "regulation of protein localization"
            evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
            meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
            GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
            GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
            OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
            EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
            Uniprot:F1MYC6
        Length = 729

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 156/421 (37%), Positives = 238/421 (56%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG-CCK-NFKNPSPIQSHAWPFLL 213
             F + D   V V+G D   A    + +F E+ L   +     K  +   +P+Q ++ P + 
Sbjct:   270 FDKYDTILVEVSGHDPPPA----ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQ 325

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN-PLCLVLSPTRELADQIY- 271
              GRD +  A+TGSGKT AF +P + H++ +    +  K +  P C++++PTREL +QIY 
Sbjct:   326 GGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYL 385

Query:   272 DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331
             +    +   C V++V +YGGT     I  +  G +I+  TPGRL+D+I      L +V +
Sbjct:   386 EARKFSFGTC-VRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKY 444

Query:   332 VVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPNPVK 387
             +VLDEADRMLDMGF   ++ ++S   +     RQ +MFSAT+P E+ +LA E++  N + 
Sbjct:   445 LVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLF 504

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
             V VG     A  DV Q +  +   S+ ++L+ +L         R +VF   + +AD +  
Sbjct:   505 VAVGQVG-GACRDVQQTILQVGQYSKREKLVEILRNIGDE---RTMVFVETKKKADFIAT 560

Query:   448 MLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507
              L +      +IHG + Q ER ++L  F+ G CP++VAT VAARGLDI +V+ VIN+  P
Sbjct:   561 FLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLP 620

Query:   508 LTTEDYVHRIGRTGRAGKKGVSHTFFT-NHNKALAGELVNVLREARQVVPDAL--LKFGT 564
              T ++YVHRIGRTGR G  G + +FF    +  LA  LV VL +A+Q VP  L  + F T
Sbjct:   621 STIDEYVHRIGRTGRCGNTGRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEIAFST 680

Query:   565 H 565
             +
Sbjct:   681 Y 681


>UNIPROTKB|Q5W5U4 [details] [associations]
            symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
            species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
            "piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
            [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
            GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
            IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
            ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
            GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
            OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
        Length = 729

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 156/421 (37%), Positives = 238/421 (56%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG-CCK-NFKNPSPIQSHAWPFLL 213
             F + D   V V+G D   A    + +F E+ L   +     K  +   +P+Q ++ P + 
Sbjct:   270 FDKYDTILVEVSGHDPPPA----ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQ 325

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN-PLCLVLSPTRELADQIY- 271
              GRD +  A+TGSGKT AF +P + H++ +    +  K +  P C++++PTREL +QIY 
Sbjct:   326 GGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYL 385

Query:   272 DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331
             +    +   C V++V +YGGT     I  +  G +I+  TPGRL+D+I      L +V +
Sbjct:   386 EARKFSFGTC-VRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKY 444

Query:   332 VVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPNPVK 387
             +VLDEADRMLDMGF   ++ ++S   +     RQ +MFSAT+P E+ +LA E++  N + 
Sbjct:   445 LVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLF 504

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
             V VG     A  DV Q +  +   S+ ++L+ +L         R +VF   + +AD +  
Sbjct:   505 VAVGQVG-GACRDVQQTILQVGQYSKREKLVEILRNIGDE---RTMVFVETKKKADFIAT 560

Query:   448 MLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507
              L +      +IHG + Q ER ++L  F+ G CP++VAT VAARGLDI +V+ VIN+  P
Sbjct:   561 FLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLP 620

Query:   508 LTTEDYVHRIGRTGRAGKKGVSHTFFT-NHNKALAGELVNVLREARQVVPDAL--LKFGT 564
              T ++YVHRIGRTGR G  G + +FF    +  LA  LV VL +A+Q VP  L  + F T
Sbjct:   621 STIDEYVHRIGRTGRCGNTGRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEIAFST 680

Query:   565 H 565
             +
Sbjct:   681 Y 681


>UNIPROTKB|F1N991 [details] [associations]
            symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
            meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
            evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
            [GO:0032880 "regulation of protein localization" evidence=IEA]
            [GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
            "perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
            GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
            OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
            IPI:IPI00819436 ProteinModelPortal:F1N991
            Ensembl:ENSGALT00000023724 Uniprot:F1N991
        Length = 568

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 142/362 (39%), Positives = 214/362 (59%)

Query:   202 SPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNR-KGKAVGKRVNPLCLVL 260
             +P+Q H+ P +  GRD +  A+TGSGKT AF +P +  ++ +     A  K+  P C+++
Sbjct:   191 TPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIV 250

Query:   261 SPTRELADQIY-DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLI 319
             +PTREL +QI+ +        C ++ V +YGGT     I  +  G +I+  TPGRL+D+I
Sbjct:   251 APTRELINQIFLEARKFVYGTC-IRPVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDII 309

Query:   320 EMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHK 375
             E     L EV ++VLDEADRMLDMGF   ++ ++S   +     RQ +MFSAT+P EV +
Sbjct:   310 EKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLMFSATFPEEVQR 369

Query:   376 LAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVF 435
             LA E++  + + +V+G+    A  DV Q +  +   S+  +L+ +L+    +   R +VF
Sbjct:   370 LAGEFLKTDYIFLVIGNT-CGACSDVQQNILQVPRLSKRDKLIEILQS---TGGERTMVF 425

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                + +AD L   L +      +IHG + Q ER  +L  F+ G C ++VAT VA+RGLDI
Sbjct:   426 VDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGKCQILVATSVASRGLDI 485

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA-LAGELVNVLREARQV 554
              +V+ VIN+  P T EDYVHRIGRTGR G  G + +FF + +   L   L+ VL EA+Q 
Sbjct:   486 ENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDDQSDGHLVQSLLKVLSEAQQE 545

Query:   555 VP 556
             VP
Sbjct:   546 VP 547


>UNIPROTKB|Q4K4H4 [details] [associations]
            symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
            species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
            EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
            ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
            PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
        Length = 622

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 147/396 (37%), Positives = 218/396 (55%)

Query:   181 SFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMM 238
             SF    L + ++G  +   +  P+P+Q  A P +L GRD +  A+TG+GKT  F +P + 
Sbjct:     2 SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61

Query:   239 HVLSNR---KGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQ 295
              +  N    K +  G R  P  LVL+PTRELA Q++D      +     S C++GG    
Sbjct:    62 RLFPNGHPDKSQRHGPR-QPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120

Query:   296 PQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSK 355
             PQ+ A+  GVD+++  PGRL+DL       LS V  +VLDEADRMLDMGF   V+ +L++
Sbjct:   121 PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query:   356 ISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ 415
             +   RQ ++FSAT+  ++  LA + +  NP ++ V   +        ++  +    S  +
Sbjct:   181 LPAKRQNLLFSATFSKDITDLAGKLLH-NPERIEVTPPNTTVERIEQRVFRL--PASHKR 237

Query:   416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLF 475
              LLA L         +VLVF   +  A+RL   L + G   VAIHG K+Q+ RTK+L+ F
Sbjct:   238 ALLAHL--ITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADF 295

Query:   476 KEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTN 535
             K G   ++VATD+AARGLDI  +  V+N+  P   EDYVHRIGRTGRAG+ G + +    
Sbjct:   296 KAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAP 355

Query:   536 HNKALAGELVNVLREARQVVPDA-LLKFGTHVKKKE 570
               + L   L ++ R  +Q + D  L+ F     + E
Sbjct:   356 DEEKL---LKSIERMTKQKIADGDLMGFDASAVEAE 388


>RGD|1308793 [details] [associations]
            symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
            species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
            evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
            [GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
            "multicellular organismal development" evidence=IEA] [GO:0007283
            "spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
            evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISO] [GO:0032880 "regulation of protein localization"
            evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
            [GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
            region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
            evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
            GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
            GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
            GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
            RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
            SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
            NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
        Length = 713

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 153/410 (37%), Positives = 235/410 (57%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG-CCK-NFKNPSPIQSHAWPFLL 213
             F + D   V V+G D   A    + +F E+ L   +     K  +   +P+Q ++ P +L
Sbjct:   253 FDKYDTILVEVSGHDAPPA----ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVL 308

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN-PLCLVLSPTRELADQIY- 271
              GRD +  A+TGSGKT AF +P + H++ +    +  K +  P C++++PTREL +QIY 
Sbjct:   309 AGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYL 368

Query:   272 DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331
             +    +   C V++V +YGGT     I  +  G +I+  TPGRL+D+I      L +V +
Sbjct:   369 EARKFSFGTC-VRAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKY 427

Query:   332 VVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPNPVK 387
             +VLDEADRMLDMGF   ++ ++S   +     RQ ++FSAT+P E+ +LA E++  N + 
Sbjct:   428 LVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLF 487

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
             V VG     A  DV Q +  +    + ++L+ +L         R +VF   + +AD +  
Sbjct:   488 VAVGQVG-GACRDVQQSILQVGPVFKKRKLVEILRNIGDE---RPMVFVETKKKADFIAT 543

Query:   448 MLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507
              L +      +IHG + Q ER ++L  F+ G CP++VAT VAARGLDI +V+ VIN++ P
Sbjct:   544 FLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLP 603

Query:   508 LTTEDYVHRIGRTGRAGKKGVSHTFF-TNHNKALAGELVNVLREARQVVP 556
              T ++YVHRIGRTGR G  G + +FF T  +  LA  LV VL +A+Q VP
Sbjct:   604 STIDEYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVP 653


>UNIPROTKB|Q64060 [details] [associations]
            symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
            GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
            GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
            GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
            RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
            SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
            NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
        Length = 713

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 153/410 (37%), Positives = 235/410 (57%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG-CCK-NFKNPSPIQSHAWPFLL 213
             F + D   V V+G D   A    + +F E+ L   +     K  +   +P+Q ++ P +L
Sbjct:   253 FDKYDTILVEVSGHDAPPA----ILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVL 308

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN-PLCLVLSPTRELADQIY- 271
              GRD +  A+TGSGKT AF +P + H++ +    +  K +  P C++++PTREL +QIY 
Sbjct:   309 AGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYL 368

Query:   272 DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331
             +    +   C V++V +YGGT     I  +  G +I+  TPGRL+D+I      L +V +
Sbjct:   369 EARKFSFGTC-VRAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKY 427

Query:   332 VVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPNPVK 387
             +VLDEADRMLDMGF   ++ ++S   +     RQ ++FSAT+P E+ +LA E++  N + 
Sbjct:   428 LVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLF 487

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLEN 447
             V VG     A  DV Q +  +    + ++L+ +L         R +VF   + +AD +  
Sbjct:   488 VAVGQVG-GACRDVQQSILQVGPVFKKRKLVEILRNIGDE---RPMVFVETKKKADFIAT 543

Query:   448 MLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507
              L +      +IHG + Q ER ++L  F+ G CP++VAT VAARGLDI +V+ VIN++ P
Sbjct:   544 FLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLP 603

Query:   508 LTTEDYVHRIGRTGRAGKKGVSHTFF-TNHNKALAGELVNVLREARQVVP 556
              T ++YVHRIGRTGR G  G + +FF T  +  LA  LV VL +A+Q VP
Sbjct:   604 STIDEYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVP 653


>UNIPROTKB|F1Q073 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
            Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
        Length = 767

 Score = 580 (209.2 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
 Identities = 155/429 (36%), Positives = 231/429 (53%)

Query:   157 KEEDDGQVVVTGKDVKEA-KYKALKSFTESKLPDDVLGC--CKNFKNPSPIQSHAWPFLL 213
             K++  GQ   TG   ++A +Y    SF +  L   +L       FK P+PIQ    P  L
Sbjct:   165 KKKKKGQE--TGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGL 222

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDV 273
              G+D    A TG+GKT AF +P +  ++   +   V  RV    LVL PTREL  Q++ V
Sbjct:   223 LGKDICACAATGTGKTAAFALPVLERLIYKPRQSPV-TRV----LVLVPTRELGIQVHSV 277

Query:   274 LNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC---HLSEVS 330
                  + C + +    GG   + Q  ALR+  DI+I TPGRLID   ++ C   HLS + 
Sbjct:   278 TKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLID--HLHNCPSFHLSSIE 335

Query:   331 FVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVV 390
              ++LDEADRMLD  FEE ++ I+   S  RQ ++FSAT   EV  LA   +  NPV++ V
Sbjct:   336 VLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLK-NPVRIFV 394

Query:   391 GSEDLAANHDVMQIVEVLDDRSRDQRLL--ALLEKYHKSQRNRVLVFALYQLEADRLENM 448
              S    A     + V +  +R  D+  +  ALL +   +  + V++F   + +A R+  +
Sbjct:   395 NSNTDVAPFLRQEFVRIRPNREGDREAIVAALLTR---TFTDHVMLFTQTKKQAHRMHIL 451

Query:   449 LRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPL 508
             L   G +V  +HG  +Q +R ++L  FK+    ++VATDVAARGLDI  V+ VIN++ P 
Sbjct:   452 LGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPN 511

Query:   509 TTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLR---EARQVVPDALLKFGTH 565
             T + YVHR+GRT RAG+ G S +      + +  E+V   +   +AR +  D +LKF   
Sbjct:   512 TIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDK 571

Query:   566 VKKKESKLY 574
             ++K E  +Y
Sbjct:   572 IEKMEKDVY 580

 Score = 42 (19.8 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query:   148 GDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKL-PDDV 191
             G+D+ +    E D G     G  V   K KAL+    +   PD V
Sbjct:    12 GEDDDVPGHPESDSGDEEEEGPVVLGRKQKALQKNRSADFNPDFV 56


>UNIPROTKB|J9P9C6 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
            Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
        Length = 788

 Score = 580 (209.2 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
 Identities = 155/429 (36%), Positives = 231/429 (53%)

Query:   157 KEEDDGQVVVTGKDVKEA-KYKALKSFTESKLPDDVLGC--CKNFKNPSPIQSHAWPFLL 213
             K++  GQ   TG   ++A +Y    SF +  L   +L       FK P+PIQ    P  L
Sbjct:   186 KKKKKGQE--TGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGL 243

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDV 273
              G+D    A TG+GKT AF +P +  ++   +   V  RV    LVL PTREL  Q++ V
Sbjct:   244 LGKDICACAATGTGKTAAFALPVLERLIYKPRQSPV-TRV----LVLVPTRELGIQVHSV 298

Query:   274 LNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC---HLSEVS 330
                  + C + +    GG   + Q  ALR+  DI+I TPGRLID   ++ C   HLS + 
Sbjct:   299 TKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLID--HLHNCPSFHLSSIE 356

Query:   331 FVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVV 390
              ++LDEADRMLD  FEE ++ I+   S  RQ ++FSAT   EV  LA   +  NPV++ V
Sbjct:   357 VLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLK-NPVRIFV 415

Query:   391 GSEDLAANHDVMQIVEVLDDRSRDQRLL--ALLEKYHKSQRNRVLVFALYQLEADRLENM 448
              S    A     + V +  +R  D+  +  ALL +   +  + V++F   + +A R+  +
Sbjct:   416 NSNTDVAPFLRQEFVRIRPNREGDREAIVAALLTR---TFTDHVMLFTQTKKQAHRMHIL 472

Query:   449 LRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPL 508
             L   G +V  +HG  +Q +R ++L  FK+    ++VATDVAARGLDI  V+ VIN++ P 
Sbjct:   473 LGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPN 532

Query:   509 TTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLR---EARQVVPDALLKFGTH 565
             T + YVHR+GRT RAG+ G S +      + +  E+V   +   +AR +  D +LKF   
Sbjct:   533 TIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDK 592

Query:   566 VKKKESKLY 574
             ++K E  +Y
Sbjct:   593 IEKMEKDVY 601

 Score = 42 (19.8 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query:   148 GDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKL-PDDV 191
             G+D+ +    E D G     G  V   K KAL+    +   PD V
Sbjct:    35 GEDDDVPGHPESDSGDEEEEGPVVLGRKQKALQKNRSADFNPDFV 79


>WB|WBGene00019245 [details] [associations]
            symbol:sacy-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
            GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
            OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
            ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
            EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
            UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
            NextBio:875413 Uniprot:Q9N5K1
        Length = 630

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 148/390 (37%), Positives = 223/390 (57%)

Query:   181 SFTESKLPDDVLGCCKNFKN---PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAM 237
             SF E K P  +L   +  K    P+ IQ    P  L+GRD IGIA TGSGKT+ F +P +
Sbjct:   190 SFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLV 249

Query:   238 MHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDV-------LNDAGKPCGVKSVCVYG 290
             M  L         +   P  L++ P+RELA QI+D+       L  AG P     +C+ G
Sbjct:   250 MFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCI-G 308

Query:   291 GTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVR 350
             G     Q   +R G+ IV+ TPGRL D++   + +L    ++VLDEADRMLDMGFE+ ++
Sbjct:   309 GVPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIK 368

Query:   351 FILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDD 410
              I       RQ ++FSAT P ++   A+  +   P+ V VG    AA+ +V+Q +E +  
Sbjct:   369 SIFYFFKAQRQTLLFSATMPRKIQFFAKSAL-VKPIVVNVGRAG-AASLNVLQELEFV-- 424

Query:   411 RSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTK 470
             RS + +L+ +LE   K+   +VL+FA  +++ D +   L   G +V +IHG K Q +R  
Sbjct:   425 RS-ENKLVRVLECLQKTSP-KVLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHA 482

Query:   471 SLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSH 530
              +  F++    ++VATDVA++GLD   +E VIN+  P   E+YVHRIGRTGR+G+KG++ 
Sbjct:   483 GIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLAT 542

Query:   531 TFFTNHNK-ALAGELVNVLREARQVVPDAL 559
             TF    ++ ++  +L  +L EA Q +P+ L
Sbjct:   543 TFINKKSEMSVLSDLKQLLAEAGQELPEFL 572


>UNIPROTKB|Q48PB7 [details] [associations]
            symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
            putative" species:264730 "Pseudomonas syringae pv. phaseolicola
            1448A" [GO:0006139 "nucleobase-containing compound metabolic
            process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
            activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
            KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
            ProtClustDB:CLSK865855 Uniprot:Q48PB7
        Length = 625

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 142/369 (38%), Positives = 209/369 (56%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNR---KGKAVGKRVN 254
             +  P+P+Q  A P +L GRD +  A+TG+GKT  F +P +  +  N    K +  G R  
Sbjct:    21 YTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHGPR-Q 79

Query:   255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGR 314
             P  LVL+PTRELA Q+++      +     S C++GG    PQ+ A+  GVD+++  PGR
Sbjct:    80 PRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGR 139

Query:   315 LIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVH 374
             L+DL       LS V  +VLDEADRMLDMGF   V+ +L+++   RQ ++FSAT+  ++ 
Sbjct:   140 LLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSNDIT 199

Query:   375 KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLV 434
              LA + +  NP ++ V   +        ++  +  +  R   LLA L      ++  VLV
Sbjct:   200 SLAGKLLH-NPERIEVTPPNTTVERIEQRVFRLAANHKRS--LLAHLITVGAWEQ--VLV 254

Query:   435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494
             F   +  A+RL   L + G   VAIHG K+Q+ RTK+L+ FK G   +MVATD+AARGLD
Sbjct:   255 FTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAARGLD 314

Query:   495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQV 554
             I  +  V+N+  P   EDYVHRIGRTGRAG+ G + +      + L   L ++ R  +Q 
Sbjct:   315 IDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL---LKSIERMTKQK 371

Query:   555 VPDA-LLKF 562
             + D  L+ F
Sbjct:   372 IADGDLMGF 380


>MGI|MGI:2385884 [details] [associations]
            symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
            GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 CTD:55661
            GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
            HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
            EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
            EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
            RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
            SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
            Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
            KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
            Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
            GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
        Length = 760

 Score = 579 (208.9 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
 Identities = 154/429 (35%), Positives = 231/429 (53%)

Query:   157 KEEDDGQVVVTGKDVKEA-KYKALKSFTESKLPDDVLGC--CKNFKNPSPIQSHAWPFLL 213
             K++  GQ    G   ++A +Y    SF +  L   +L       FK P+PIQ    P  L
Sbjct:   162 KKKKKGQAA--GGFFEDASEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGL 219

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDV 273
              G+D    A TG+GKT AF +P +  ++   +  AV  RV    LVL PTREL  Q++ V
Sbjct:   220 LGKDICACAATGTGKTAAFALPVLERLIYKPRQAAV-TRV----LVLVPTRELGIQVHSV 274

Query:   274 LNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC---HLSEVS 330
                  + C + +    GG   + Q  ALR+  DI+I TPGRLID   ++ C   HLS + 
Sbjct:   275 TKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLID--HLHNCPSFHLSSIE 332

Query:   331 FVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVV 390
              ++LDEADRMLD  FEE ++ I+   S  RQ ++FSAT   EV  LA   +  NPV++ V
Sbjct:   333 VLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLK-NPVRIFV 391

Query:   391 GSEDLAANHDVMQIVEVLDDRSRDQRLL--ALLEKYHKSQRNRVLVFALYQLEADRLENM 448
              S    A     + + +  +R  D+  +  ALL +   +  + V++F   + +A R+  +
Sbjct:   392 NSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMR---TFTDHVMLFTQTKKQAHRMHIL 448

Query:   449 LRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPL 508
             L   G +V  +HG  +Q +R ++L  FK+    ++VATDVAARGLDI  V+ VIN++ P 
Sbjct:   449 LGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPN 508

Query:   509 TTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLR---EARQVVPDALLKFGTH 565
             T + YVHR+GRT RAG+ G S +      + +  E+V   +   +AR +  D +LKF   
Sbjct:   509 TVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDK 568

Query:   566 VKKKESKLY 574
             ++K E  +Y
Sbjct:   569 IEKLEKDVY 577

 Score = 37 (18.1 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query:   148 GDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKL-PDDV 191
             G+++ +    E D G     G  V   K KAL+    +   PD V
Sbjct:    12 GENDEVPVEPESDSGDEEEEGPIVLGRKQKALQKNRSADFNPDFV 56


>TIGR_CMR|GSU_0522 [details] [associations]
            symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
            "RNA catabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
            RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
            KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
            BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
        Length = 443

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 143/350 (40%), Positives = 194/350 (55%)

Query:   182 FTESKLPDDVL-GCCK-NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMH 239
             F +  LP+ V+ G     F + +PIQ    P  L G+D  G A+TG+GKT AF +     
Sbjct:     3 FADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFTK 62

Query:   240 VLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQIT 299
             +L + +G   G+R +P  ++L+PTREL  QI       G  CG     +YGG     Q  
Sbjct:    63 LLRSGRG---GERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKN 119

Query:   300 ALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL- 358
             AL+ G D+V+GTPGRLID ++  V  L E+  +V+DEADRM DMGF   +RFIL ++   
Sbjct:   120 ALKEGADVVVGTPGRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPY 179

Query:   359 -ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRL 417
               RQ +MFSAT    V +LA E+M+  P KV V  E + A     ++ +VL    R ++ 
Sbjct:   180 DKRQNLMFSATLNQRVMELAYEFMNV-PEKVAVTPEQMTAE----RVEQVLYHVGRKEKF 234

Query:   418 LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE 477
               LL    K    R ++F   + EA+ L+  L  + +    I G   Q +R K L  FK 
Sbjct:   235 PLLLGLLRKEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKS 294

Query:   478 GTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKG 527
             G  P+M+ATDVA+RGL I  V  VINY  P   EDYVHRIGRT RAG +G
Sbjct:   295 GKLPIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEG 344


>UNIPROTKB|P0A9P6 [details] [associations]
            symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000027 "ribosomal large
            subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
            process" evidence=IGI] [GO:0003724 "RNA helicase activity"
            evidence=IDA] [GO:0070417 "cellular response to cold"
            evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
            GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
            RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
            DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
            PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
            EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
            KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
            EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
            BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
            Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
        Length = 629

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 138/385 (35%), Positives = 213/385 (55%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             ++ PSPIQ+   P LLNGRD +G+A+TGSGKT AF +P + ++    K         P  
Sbjct:    26 YEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKA--------PQI 77

Query:   258 LVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
             LVL+PTRELA Q+ + + D  K   GV  V +YGG     Q+ ALR G  IV+GTPGRL+
Sbjct:    78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLL 137

Query:   317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKL 376
             D ++     LS++S +VLDEAD ML MGF E V  I+++I    Q  +FSAT P  + ++
Sbjct:   138 DHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRI 197

Query:   377 AEEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVF 435
                +M +P  V++      +    D+ Q    +    +++ L+  LE       +  ++F
Sbjct:   198 TRRFMKEPQEVRI---QSSVTTRPDISQSYWTVWGMRKNEALVRFLEA---EDFDAAIIF 251

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                +     +   L R+G+   A++G   Q  R ++L   K+G   +++ATDVAARGLD+
Sbjct:   252 VRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 311

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVV 555
               + +V+NY  P+ +E YVHRIGRTGRAG+ G +  F  N  + L   L N+ R  +  +
Sbjct:   312 ERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL---LRNIERTMKLTI 368

Query:   556 PDALLKFGTHVKKKESKLYGAHFRE 580
             P+  L     + K+  + + A  ++
Sbjct:   369 PEVELPNAELLGKRRLEKFAAKVQQ 393


>UNIPROTKB|F1NL04 [details] [associations]
            symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
            evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
            [GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
            of protein localization" evidence=IEA] [GO:0033391 "chromatoid
            body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
            GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
            EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
            Ensembl:ENSGALT00000038830 Uniprot:F1NL04
        Length = 542

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 139/357 (38%), Positives = 210/357 (58%)

Query:   202 SPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNR-KGKAVGKRVNPLCLVL 260
             +P+Q H+ P +  GRD +  A+TGSGKT AF +P +  ++ +     A  K+  P C+++
Sbjct:   191 TPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIV 250

Query:   261 SPTRELADQIY-DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLI 319
             +PTREL +QI+ +        C ++ V +YGGT     I  +  G +I+  TPGRL+D+I
Sbjct:   251 APTRELINQIFLEARKFVYGTC-IRPVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDII 309

Query:   320 EMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHK 375
             E     L EV ++VLDEADRMLDMGF   ++ ++S   +     RQ +MFSAT+P EV +
Sbjct:   310 EKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLMFSATFPEEVQR 369

Query:   376 LAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVF 435
             LA E++  + + +V+G+    A  DV Q +  +   S+  +L+ +L+    +   R +VF
Sbjct:   370 LAGEFLKTDYIFLVIGNT-CGACSDVQQNILQVPRLSKRDKLIEILQS---TGGERTMVF 425

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                + +AD L   L +      +IHG + Q ER  +L  F+ G C ++VAT VA+RGLDI
Sbjct:   426 VDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGKCQILVATSVASRGLDI 485

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA-LAGELVNVLREA 551
              +V+ VIN+  P T EDYVHRIGRTGR G  G + +FF + +   L   L+ VL EA
Sbjct:   486 ENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDDQSDGHLVQSLLKVLSEA 542


>UNIPROTKB|Q96GQ7 [details] [associations]
            symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
            EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
            EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
            EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
            EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
            UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
            MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
            SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
            DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
            UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
            neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
            OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
            NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
            Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
        Length = 796

 Score = 572 (206.4 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
 Identities = 148/411 (36%), Positives = 222/411 (54%)

Query:   174 AKYKALKSFTESKLPDDVLGC--CKNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIA 231
             ++Y    SF +  L   +L       FK P+PIQ    P  L G+D    A TG+GKT A
Sbjct:   212 SQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAA 271

Query:   232 FGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGG 291
             F +P +  ++   +   V  RV    LVL PTREL  Q++ V     + C + +    GG
Sbjct:   272 FALPVLERLIYKPRQAPV-TRV----LVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGG 326

Query:   292 TSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC---HLSEVSFVVLDEADRMLDMGFEEP 348
                + Q  ALR+  DI+I TPGRLID   ++ C   HLS +  ++LDEADRMLD  FEE 
Sbjct:   327 LDVKSQEAALRAAPDILIATPGRLID--HLHNCPSFHLSSIEVLILDEADRMLDEYFEEQ 384

Query:   349 VRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVL 408
             ++ I+   S  RQ ++FSAT   EV  LA   +  NPV++ V S    A     + + + 
Sbjct:   385 MKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLK-NPVRIFVNSNTDVAPFLRQEFIRIR 443

Query:   409 DDRSRDQRLL--ALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQH 466
              +R  D+  +  ALL +   +  + V++F   + +A R+  +L   G +V  +HG  +Q 
Sbjct:   444 PNREGDREAIVAALLTR---TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQT 500

Query:   467 ERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKK 526
             +R ++L  FK+    ++VATDVAARGLDI  V+ VIN++ P T + YVHR+GRT RAG+ 
Sbjct:   501 QRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRA 560

Query:   527 GVSHTFFTNHNKALAGELVNVLR---EARQVVPDALLKFGTHVKKKESKLY 574
             G S +      + +  E+V   +   +AR +  D +LKF   ++K E  +Y
Sbjct:   561 GRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVY 611

 Score = 39 (18.8 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query:   148 GDDETISFFKEEDDGQVVVTGKDVKEAKYKAL-KSFTESKLPDDV 191
             G+D+ +    E D G     G  V   + KAL K+ +    PD V
Sbjct:    43 GEDDEVPVEPESDSGDEEEEGPIVLGRRQKALGKNRSADFNPDFV 87


>UNIPROTKB|Q0C4B9 [details] [associations]
            symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
            species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
            GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
            RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
            GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
            BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
        Length = 536

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 143/385 (37%), Positives = 216/385 (56%)

Query:   181 SFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMM 238
             +F +  L +++L       +  P+PIQ  A P +L G D  G+A+TG+GKT AF +P M+
Sbjct:     5 TFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLP-MI 63

Query:   239 HVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQI 298
               LS  + +A   R+ P CL+L PTRELA Q+ +     GK   +    + GG S + Q 
Sbjct:    64 QRLSTGRARA---RM-PRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQE 119

Query:   299 TALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL 358
             T L+ GVD++I TPGRL+D  +     +  V  +++DEADRMLDMGF   +  I +K+  
Sbjct:   120 TLLQRGVDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPA 179

Query:   359 ARQMVMFSATWPIEVHKLAEEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRL 417
              RQ ++FSAT+P ++ +LA+ +  DP  ++V   ++       + Q V  L       R 
Sbjct:   180 NRQTLLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAET---ISQFVVKLPTNDGKARR 236

Query:   418 LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE 477
              AL      +     +VF   ++E D +   L + G     IHG   Q  R+++L  F++
Sbjct:   237 TALRRVIEATNVKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRD 296

Query:   478 GTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN 537
             G   L+VA+DVAARGLDIPDV  V N+  P   EDYVHRIGRTGRAG+ G S+T  T  +
Sbjct:   297 GKLKLLVASDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPAD 356

Query:   538 KALAGELVNVLR-EARQVVPDALLK 561
                 G +V +++ +  + +P+ LL+
Sbjct:   357 DKSWGFVVKMIKKDVPEFMPEGLLE 381


>UNIPROTKB|Q3AFI3 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 132/378 (34%), Positives = 210/378 (55%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             F+ P+PIQ  A P +L G + +G A TG+GKT A+ +P +  +   +K +          
Sbjct:    22 FEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRGKKAQV--------- 72

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             L+++PTRELA Q+ D +   GK   V+++ VYGG + + QI  LR GV++++GTPGR++D
Sbjct:    73 LIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPGRILD 132

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              I       +E+  V+LDEAD MLDMGF + +  IL+ ++  +Q ++FSAT P  +  + 
Sbjct:   133 HIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTII 192

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFAL 437
             ++++       +VG E       + Q+   L +  + + L+++L      Q    +VF  
Sbjct:   193 KKFLGGYKTVKLVGREKTVPA--IRQVYYELPETEKIEGLVSILNSELPIQ---AIVFCR 247

Query:   438 YQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497
              +   D +   L   G+    +HG  +Q ERT+++  FK G   L+VATDVAARGLDIPD
Sbjct:   248 TKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPD 307

Query:   498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVL--REARQVV 555
             V  VIN+  P   E Y+HRIGRTGRAG++G + T      + L   +   +  R  R+++
Sbjct:   308 VSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEAINKRLKREIL 367

Query:   556 PDALLKFGTHVKKKESKL 573
             P+ +       KK   K+
Sbjct:   368 PEPVDLEEARFKKIAKKI 385


>TIGR_CMR|CHY_0229 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 132/378 (34%), Positives = 210/378 (55%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             F+ P+PIQ  A P +L G + +G A TG+GKT A+ +P +  +   +K +          
Sbjct:    22 FEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRGKKAQV--------- 72

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             L+++PTRELA Q+ D +   GK   V+++ VYGG + + QI  LR GV++++GTPGR++D
Sbjct:    73 LIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPGRILD 132

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              I       +E+  V+LDEAD MLDMGF + +  IL+ ++  +Q ++FSAT P  +  + 
Sbjct:   133 HIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTII 192

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFAL 437
             ++++       +VG E       + Q+   L +  + + L+++L      Q    +VF  
Sbjct:   193 KKFLGGYKTVKLVGREKTVPA--IRQVYYELPETEKIEGLVSILNSELPIQ---AIVFCR 247

Query:   438 YQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497
              +   D +   L   G+    +HG  +Q ERT+++  FK G   L+VATDVAARGLDIPD
Sbjct:   248 TKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPD 307

Query:   498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVL--REARQVV 555
             V  VIN+  P   E Y+HRIGRTGRAG++G + T      + L   +   +  R  R+++
Sbjct:   308 VSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEAINKRLKREIL 367

Query:   556 PDALLKFGTHVKKKESKL 573
             P+ +       KK   K+
Sbjct:   368 PEPVDLEEARFKKIAKKI 385


>UNIPROTKB|A1A4H6 [details] [associations]
            symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
            ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
            GeneID:514567 KEGG:bta:514567 CTD:55661
            GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
            HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
            Uniprot:A1A4H6
        Length = 765

 Score = 573 (206.8 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
 Identities = 150/427 (35%), Positives = 229/427 (53%)

Query:   174 AKYKALKSFTESKLPDDVLGC--CKNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIA 231
             ++Y    SF +  L   +L       FK P+PIQ    P  L G+D    A TG+GKT A
Sbjct:   181 SQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAA 240

Query:   232 FGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGG 291
             F +P +  ++   +   V  RV    LVL PTREL  Q++ V     + C + +    GG
Sbjct:   241 FALPVLERLIYKPRQAPV-TRV----LVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGG 295

Query:   292 TSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC---HLSEVSFVVLDEADRMLDMGFEEP 348
                + Q  ALR+  DI+I TPGRLID   ++ C   HLS +  ++LDEADRMLD  FEE 
Sbjct:   296 LDVKSQEAALRAAPDILIATPGRLID--HLHNCPSFHLSSIEVLILDEADRMLDEYFEEQ 353

Query:   349 VRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVL 408
             ++ I+   S  RQ ++FSAT   EV  LA   +  NPV++ V S    A     + + + 
Sbjct:   354 MKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLK-NPVRIFVNSNTDVAPFLRQEFIRIR 412

Query:   409 DDRSRDQRLL--ALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQH 466
              +R  D+  +  ALL +   +  + V++F   + +A R+  +L   G +V  +HG  +Q 
Sbjct:   413 PNREGDREAIVAALLMR---TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQT 469

Query:   467 ERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKK 526
             +R ++L  FK+    ++VATDVAARGLDI  V+ VIN++ P T + YVHR+GRT RAG+ 
Sbjct:   470 QRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRA 529

Query:   527 GVSHTFFTNHNKALAGELVNVLR---EARQVVPDALLKFGTHVKKKESKLYGAHFREISA 583
             G S +      + +  E+V   +   +AR +  D +LKF   ++K E  +Y     ++ A
Sbjct:   530 GRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAV--LQLEA 587

Query:   584 DAPKAKK 590
             +  + +K
Sbjct:   588 EEKEMQK 594

 Score = 37 (18.1 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
 Identities = 14/45 (31%), Positives = 18/45 (40%)

Query:   148 GDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKL-PDDV 191
             G+DE +    E D       G  V   K KAL+    +   PD V
Sbjct:    12 GEDEDVQVEPETDSEDEEEEGPIVLGRKQKALQKNRSADFNPDFV 56


>TIGR_CMR|SO_1383 [details] [associations]
            symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
            ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
            PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
        Length = 433

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 138/363 (38%), Positives = 208/363 (57%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             ++  +PIQ  A P +  G+D +  A+TG+GKT AF +P +  ++ N        + N   
Sbjct:    21 YQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPSETL---KSNTRV 77

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             L+L+PTRELA Q+ + +    K      + +YGG   + Q   L+ G DI++ TPGRL++
Sbjct:    78 LILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLKRGADIIVATPGRLLE 137

Query:   318 LIEMNVCHLS--EVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHK 375
                +  C+LS   V F+VLDEADRMLDMGF   ++ IL  ++  RQ ++FSAT+   V K
Sbjct:   138 --HLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNLLFSATFSSAVKK 195

Query:   376 LAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVF 435
             LA E M   P  +    ++  A+  V Q+V  ++ R + + L  L+ K +  Q   VLVF
Sbjct:   196 LANEMMI-KPQVISADKQNTTAD-TVSQVVYPVEQRRKRELLSELIGKKNWQQ---VLVF 250

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                +  AD L   L   G     +HG+KAQ  R ++L  F  G   ++VAT+VAARGLDI
Sbjct:   251 TATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVATEVAARGLDI 310

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVL-REARQV 554
             P +E V+N+  P   EDYVHRIGRTGRAGK GV+ +F +   +    ++  ++ ++ R++
Sbjct:   311 PSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEKLIGQKIRRI 370

Query:   555 -VP 556
              VP
Sbjct:   371 TVP 373


>UNIPROTKB|I3LNN1 [details] [associations]
            symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
            GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
        Length = 801

 Score = 375 (137.1 bits), Expect = 3.2e-57, Sum P(2) = 3.2e-57
 Identities = 83/187 (44%), Positives = 118/187 (63%)

Query:   179 LKSFTESKLPD---DVLGCCKNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVP 235
             ++S+ +S LP    +V+  C  +K P+PIQ  A P  L  RD IG+A+TGSGKT AF +P
Sbjct:   390 IRSWKDSSLPPHILEVIDKC-GYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIP 448

Query:   236 AMMHVLSNRKGKAVGKR-VNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
              ++ + +  K   + +    P  ++L+PTRELA QI +     GKP G++ V V GG S+
Sbjct:   449 LLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRPVAVIGGISR 508

Query:   295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
             + Q   LR G +IVI TPGRLID++E     LS  ++VVLDEADRM+DMGFE  V+ IL 
Sbjct:   509 EDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILE 568

Query:   355 KISLARQ 361
              + ++ Q
Sbjct:   569 HMPVSNQ 575

 Score = 249 (92.7 bits), Expect = 3.2e-57, Sum P(2) = 3.2e-57
 Identities = 52/111 (46%), Positives = 68/111 (61%)

Query:   454 WKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDY 513
             +    +HG K Q +R  +LS  K G   ++VATDVA RG+DI DV +V+NY      EDY
Sbjct:   670 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDY 729

Query:   514 VHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREAR-QVVPDALLKFG 563
             +HRIGRTGRAGK GV+ TF T  + A+  EL   + E+    +P AL K G
Sbjct:   730 IHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSAIPPALEKQG 780

 Score = 37 (18.1 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query:   400 DVMQIVEVLDDRSRDQRLLALLEKYHKSQR 429
             D+M+    L+++ +++  L  L K    QR
Sbjct:   322 DLMEKRRTLEEKEQEEARLRKLRKKEAKQR 351


>WB|WBGene00001598 [details] [associations]
            symbol:glh-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
            "post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
            development" evidence=IMP] [GO:0016070 "RNA metabolic process"
            evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
            "RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0008432 "JUN kinase binding" evidence=IPI]
            [GO:0043621 "protein self-association" evidence=IPI] [GO:0017151
            "DEAD/H-box RNA helicase binding" evidence=IPI] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
            Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
            GO:GO:0003723 GO:GO:0009791 GO:GO:0007281 Gene3D:4.10.60.10
            SUPFAM:SSF57756 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
            GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772 EMBL:FO080897
            PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
            ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
            PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
            KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
            InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
        Length = 763

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 150/419 (35%), Positives = 225/419 (53%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLL 213
             F +  D +V +T  + K    K  K+F E+ L + +     +  +   +PIQ +A P + 
Sbjct:   318 FNKFFDAEVKLTSSE-KTVGIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVH 376

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKR-VNPLCLVLSPTRELADQIYD 272
              G D +  A+TGSGKT AF +P M  ++ +      G+    P C++L+PTRELADQIY+
Sbjct:   377 QGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYN 436

Query:   273 VLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFV 332
                       ++   VYGG +       +  G  I++GT GR+    E     L +  F 
Sbjct:   437 EGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFF 496

Query:   333 VLDEADRMLD-MGFEEPVRFILSKISLAR----QMVMFSATWPIEVHKLAEEYMDPNPVK 387
             VLDEADRM+D MGF   +  I++  S+ R    Q +MFSAT+P  V + A  ++  N V 
Sbjct:   497 VLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVM 556

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALL----EKY--HKSQR---NRVLVFALY 438
             + +     AAN  V+Q  E  +   +  +LL LL    + Y   KS      + +VF   
Sbjct:   557 IAIDKIG-AANKCVLQEFERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQ 615

Query:   439 QLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDV 498
             +  AD L ++L  +    + IHG + Q ER+++L  F+ G+ P+++AT VA RGLDI  V
Sbjct:   616 RAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGV 675

Query:   499 EVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPD 557
             + VINY  P   +DY+HRIGRTGR G  G + T F + + +L  ELV VL +A+Q+VPD
Sbjct:   676 DHVINYDMPDNIDDYIHRIGRTGRVGNSGRA-TSFISEDCSLLSELVGVLADAQQIVPD 733


>UNIPROTKB|P34689 [details] [associations]
            symbol:glh-1 "ATP-dependent RNA helicase glh-1"
            species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
            GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
            GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0043186 GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772
            EMBL:FO080897 PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
            ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
            PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
            KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
            InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
        Length = 763

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 150/419 (35%), Positives = 225/419 (53%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLL 213
             F +  D +V +T  + K    K  K+F E+ L + +     +  +   +PIQ +A P + 
Sbjct:   318 FNKFFDAEVKLTSSE-KTVGIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVH 376

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKR-VNPLCLVLSPTRELADQIYD 272
              G D +  A+TGSGKT AF +P M  ++ +      G+    P C++L+PTRELADQIY+
Sbjct:   377 QGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYN 436

Query:   273 VLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFV 332
                       ++   VYGG +       +  G  I++GT GR+    E     L +  F 
Sbjct:   437 EGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFF 496

Query:   333 VLDEADRMLD-MGFEEPVRFILSKISLAR----QMVMFSATWPIEVHKLAEEYMDPNPVK 387
             VLDEADRM+D MGF   +  I++  S+ R    Q +MFSAT+P  V + A  ++  N V 
Sbjct:   497 VLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVM 556

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALL----EKY--HKSQR---NRVLVFALY 438
             + +     AAN  V+Q  E  +   +  +LL LL    + Y   KS      + +VF   
Sbjct:   557 IAIDKIG-AANKCVLQEFERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQ 615

Query:   439 QLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDV 498
             +  AD L ++L  +    + IHG + Q ER+++L  F+ G+ P+++AT VA RGLDI  V
Sbjct:   616 RAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGV 675

Query:   499 EVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPD 557
             + VINY  P   +DY+HRIGRTGR G  G + T F + + +L  ELV VL +A+Q+VPD
Sbjct:   676 DHVINYDMPDNIDDYIHRIGRTGRVGNSGRA-TSFISEDCSLLSELVGVLADAQQIVPD 733


>UNIPROTKB|Q8ECL2 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 140/364 (38%), Positives = 213/364 (58%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPL- 256
             + +P+P+Q+   P +L+GRD +  A TGSGKT AF +P +   LS  + K+  K    + 
Sbjct:    29 YVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQR-LS--EAKSADKSAGVVR 85

Query:   257 CLVLSPTRELADQIYD-VLNDAGKPCG-VKSVCVYGGTSKQPQITALRSGVDIVIGTPGR 314
             CLVL PTRELA Q+ D  L+ A    G +K V  +GG S   Q+ +LR+G D+++ TPGR
Sbjct:    86 CLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATPGR 145

Query:   315 LIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVH 374
             L+DL+  N   L++VS  VLDEADRML +GF E +  +L+ +   +Q ++FSAT+P EV 
Sbjct:   146 LLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLLFSATFPEEVR 205

Query:   375 KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLV 434
              L  + +   P++  + SE  +      +++ V  +R +   LLA L K H  Q ++ L+
Sbjct:   206 ALTTKLLH-QPLEYHLQSEQESTIEQ--RVITV--NREQKTALLAHLIKQH--QWSQALI 258

Query:   435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494
             F   +   + L   L + G      HG KAQ  RT+ L  FK G   +++ATD+AARG+D
Sbjct:   259 FVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGID 318

Query:   495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAG--ELVNVLREAR 552
             I  + VVIN+  P +  DY+HRIGR+GRAG+ G++ T  ++      G  E  N ++  R
Sbjct:   319 IDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIKLVR 378

Query:   553 QVVP 556
             + +P
Sbjct:   379 EQIP 382


>TIGR_CMR|DET_0183 [details] [associations]
            symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:243164 "Dehalococcoides ethenogenes 195"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
            STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
            OMA:NFAPAVM ProtClustDB:CLSK837629
            BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
        Length = 560

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 131/356 (36%), Positives = 204/356 (57%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             ++ P+PIQ+ A P +L G D IG+A+TG+GKT A+ +P +  +LS  +G     RV  L 
Sbjct:    21 YQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLSTPRG-----RVRTL- 74

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
              VL+PTRELA QI +     G+   ++   +YGG +   QI  LRSGVD+V+  PGRL+D
Sbjct:    75 -VLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRSGVDVVVACPGRLLD 133

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              I      +  V  +++DEADRM DMGF+  ++ IL  +    Q ++FSAT P EV KL 
Sbjct:   134 HIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLLFSATMPPEVRKLT 193

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFAL 437
              E    NPV + +G++  A++  V   V  + +  +   L+ +L+    ++   VL+FA 
Sbjct:   194 LE-TQTNPVTIQIGTQAPASS--VSHSVYPVKNHQKTPLLIEILKT---TETKSVLIFAR 247

Query:   438 YQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497
              +  A+ L + + R+G+   ++ G  +Q+ R   +  F+ G   ++VATD+AARGLDI  
Sbjct:   248 TKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAARGLDIDH 307

Query:   498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQ 553
             +  VINY  P T EDY HRIGRTGR  + G + +  T  +  +  ++  ++    Q
Sbjct:   308 ISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDIQKLINSPIQ 363


>TIGR_CMR|SO_3125 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 140/364 (38%), Positives = 213/364 (58%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPL- 256
             + +P+P+Q+   P +L+GRD +  A TGSGKT AF +P +   LS  + K+  K    + 
Sbjct:    29 YVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQR-LS--EAKSADKSAGVVR 85

Query:   257 CLVLSPTRELADQIYD-VLNDAGKPCG-VKSVCVYGGTSKQPQITALRSGVDIVIGTPGR 314
             CLVL PTRELA Q+ D  L+ A    G +K V  +GG S   Q+ +LR+G D+++ TPGR
Sbjct:    86 CLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATPGR 145

Query:   315 LIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVH 374
             L+DL+  N   L++VS  VLDEADRML +GF E +  +L+ +   +Q ++FSAT+P EV 
Sbjct:   146 LLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLLFSATFPEEVR 205

Query:   375 KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLV 434
              L  + +   P++  + SE  +      +++ V  +R +   LLA L K H  Q ++ L+
Sbjct:   206 ALTTKLLH-QPLEYHLQSEQESTIEQ--RVITV--NREQKTALLAHLIKQH--QWSQALI 258

Query:   435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494
             F   +   + L   L + G      HG KAQ  RT+ L  FK G   +++ATD+AARG+D
Sbjct:   259 FVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGID 318

Query:   495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAG--ELVNVLREAR 552
             I  + VVIN+  P +  DY+HRIGR+GRAG+ G++ T  ++      G  E  N ++  R
Sbjct:   319 IDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIKLVR 378

Query:   553 QVVP 556
             + +P
Sbjct:   379 EQIP 382


>TIGR_CMR|GSU_0491 [details] [associations]
            symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
            RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
            KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
            BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
        Length = 450

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 141/380 (37%), Positives = 208/380 (54%)

Query:   181 SFTESKLPDDVL---GCCKNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAM 237
             +F E KL   +L     C  +  P+P+Q+ A P  L   D +  A+TG+GKT AF +PA+
Sbjct:     2 TFAELKLAPHILKAVAAC-GYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPAL 60

Query:   238 MHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQ 297
               + S  +G   G RV    LVL+PTRELA Q+ D +   G    V+S  + GG     Q
Sbjct:    61 QRLSSPPQGPGRGPRV----LVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQ 116

Query:   298 ITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357
             +  L + VD ++ TPGRL+DL++     LS +  +VLDEADRMLDMGF + V  I +   
Sbjct:   117 LRLLSAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASP 176

Query:   358 LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRL 417
               RQ ++F+AT    + +LA   +   P ++ +        H + Q + V DD     RL
Sbjct:   177 ATRQTLLFTATMDSAMARLAGRLLR-EPERIDIAGTKTTHEH-IEQRLHVADDLHHKNRL 234

Query:   418 LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE 477
             L  L    +S R R ++F+  + +A+ L   L+  G    A+HG   Q+ R ++++  K+
Sbjct:   235 LRHLIT-DESLR-RAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQ 292

Query:   478 GTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN 537
             G   L+VATDVAARGLD+  +  VIN+  P   EDYVHRIGRTGRAG  G++ +F  + N
Sbjct:   293 GRIRLLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISF-ASLN 351

Query:   538 KALAGELVNVLREARQVVPD 557
             +     L  + R   Q +P+
Sbjct:   352 EV--NYLARIERYIGQTLPE 369


>SGD|S000001107 [details] [associations]
            symbol:RRP3 "Protein involved in rRNA processing"
            species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
            biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
            SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
            LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
            evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
            GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
            GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
            OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
            RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
            DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
            PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
            KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
            GermOnline:YHR065C Uniprot:P38712
        Length = 501

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 143/412 (34%), Positives = 228/412 (55%)

Query:   142 GKESENGDDETISFFKE-EDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--F 198
             G ES++ +D T    K  +   +  V+ ++    + ++ +SF+E  L  +++  CKN  +
Sbjct:    42 GSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKNLNY 101

Query:   199 KNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCL 258
               P+PIQS A P  L G D IG+A+TGSGKT AF +P +  +  +++           C 
Sbjct:   102 SKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYA-------C- 153

Query:   259 VLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDL 318
             +L+PTRELA QI +  +  G   GV+S C+ GG +   Q   L     I+I TPGRL+D 
Sbjct:   154 ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDH 213

Query:   319 IEMNV-CHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI-SLARQMVMFSATWPIEVHKL 376
             +E      L ++ F+V+DEADR+LDM F   +  IL  I +  R   +FSAT   ++ KL
Sbjct:   214 LENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYLFSATMTSKIDKL 273

Query:   377 AEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFA 436
                 +  NPVK  V ++    +  ++Q + V+    ++  L+ LL ++       +++F 
Sbjct:   274 QRASLT-NPVKCAVSNKYQTVD-TLVQTLMVVPGGLKNTYLIYLLNEFIGKT---MIIFT 328

Query:   437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496
               +  A+RL  +     +   A+HG   Q++R  SL LFK G   ++VATDVAARGLDIP
Sbjct:   329 RTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIP 388

Query:   497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVL 548
              V++V+NY  P+ ++ Y+HR+GRT RAG+ G S +  + ++  L   +  VL
Sbjct:   389 SVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 440


>UNIPROTKB|A0R8U6 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
            "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
            ProteinModelPortal:A0R8U6 STRING:A0R8U6
            EnsemblBacteria:EBBACT00000069056 GeneID:4546566
            GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
        Length = 528

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 143/378 (37%), Positives = 204/378 (53%)

Query:   179 LKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             + +F E  L D +L   ++  F+  +PIQ+   P  L G+D IG A+TG+GKT AFG+P 
Sbjct:     1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP- 59

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQP 296
             ++  +   K    G       +V++PTRELA Q+ + L   GK   V+ + +YGG     
Sbjct:    60 LLDKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINR 112

Query:   297 QITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356
             QI AL+    I++GTPGR++D I      L  V  VVLDEAD ML+MGF E +  IL+ +
Sbjct:   113 QIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172

Query:   357 SLARQMVMFSATWPIEVHKLAEEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ 415
                 Q ++FSAT P  + ++AE +M +P  +KV    E    N  + Q    + ++ +  
Sbjct:   173 PETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKA-KEVTMPN--IQQFYLEVQEKKKFD 229

Query:   416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLF 475
              L  LL+          +VF   +   D L   L   G+    IHG   Q +R   L  F
Sbjct:   230 VLTRLLDI---QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKF 286

Query:   476 KEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTN 535
             KEG+  ++VATDVAARGLDI  V  V N+  P   E YVHRIGRTGRAGKKG++  F T 
Sbjct:   287 KEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTP 346

Query:   536 HNKALAGELVNVLREARQ 553
                  +G+L N+ R  ++
Sbjct:   347 RE---SGQLKNIERTTKR 361


>UNIPROTKB|Q63GX5 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
            "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
            ProteinModelPortal:Q63GX5 STRING:Q63GX5
            EnsemblBacteria:EBBACT00000041470 GeneID:3022962
            GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
            BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
        Length = 528

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 143/378 (37%), Positives = 204/378 (53%)

Query:   179 LKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             + +F E  L D +L   ++  F+  +PIQ+   P  L G+D IG A+TG+GKT AFG+P 
Sbjct:     1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP- 59

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQP 296
             ++  +   K    G       +V++PTRELA Q+ + L   GK   V+ + +YGG     
Sbjct:    60 LLDKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINR 112

Query:   297 QITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356
             QI AL+    I++GTPGR++D I      L  V  VVLDEAD ML+MGF E +  IL+ +
Sbjct:   113 QIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172

Query:   357 SLARQMVMFSATWPIEVHKLAEEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ 415
                 Q ++FSAT P  + ++AE +M +P  +KV    E    N  + Q    + ++ +  
Sbjct:   173 PETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKA-KEVTMPN--IQQFYLEVQEKKKFD 229

Query:   416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLF 475
              L  LL+          +VF   +   D L   L   G+    IHG   Q +R   L  F
Sbjct:   230 VLTRLLDI---QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKF 286

Query:   476 KEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTN 535
             KEG+  ++VATDVAARGLDI  V  V N+  P   E YVHRIGRTGRAGKKG++  F T 
Sbjct:   287 KEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTP 346

Query:   536 HNKALAGELVNVLREARQ 553
                  +G+L N+ R  ++
Sbjct:   347 RE---SGQLKNIERTTKR 361


>UNIPROTKB|Q6HPE6 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:281309 "Bacillus thuringiensis serovar konkukian str.
            97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
            ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
            GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
            PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
        Length = 528

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 143/378 (37%), Positives = 204/378 (53%)

Query:   179 LKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             + +F E  L D +L   ++  F+  +PIQ+   P  L G+D IG A+TG+GKT AFG+P 
Sbjct:     1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP- 59

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQP 296
             ++  +   K    G       +V++PTRELA Q+ + L   GK   V+ + +YGG     
Sbjct:    60 LLDKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINR 112

Query:   297 QITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356
             QI AL+    I++GTPGR++D I      L  V  VVLDEAD ML+MGF E +  IL+ +
Sbjct:   113 QIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172

Query:   357 SLARQMVMFSATWPIEVHKLAEEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ 415
                 Q ++FSAT P  + ++AE +M +P  +KV    E    N  + Q    + ++ +  
Sbjct:   173 PETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKA-KEVTMPN--IQQFYLEVQEKKKFD 229

Query:   416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLF 475
              L  LL+          +VF   +   D L   L   G+    IHG   Q +R   L  F
Sbjct:   230 VLTRLLDI---QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKF 286

Query:   476 KEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTN 535
             KEG+  ++VATDVAARGLDI  V  V N+  P   E YVHRIGRTGRAGKKG++  F T 
Sbjct:   287 KEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTP 346

Query:   536 HNKALAGELVNVLREARQ 553
                  +G+L N+ R  ++
Sbjct:   347 RE---SGQLKNIERTTKR 361


>UNIPROTKB|Q73EU1 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
            OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
            RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
            DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
            GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
            Uniprot:Q73EU1
        Length = 525

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 143/378 (37%), Positives = 204/378 (53%)

Query:   179 LKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             + +F E  L D +L   ++  F+  +PIQ+   P  L G+D IG A+TG+GKT AFG+P 
Sbjct:     1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP- 59

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQP 296
             ++  +   K    G       +V++PTRELA Q+ + L   GK   V+ + +YGG     
Sbjct:    60 LLDKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINR 112

Query:   297 QITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356
             QI AL+    I++GTPGR++D I      L  V  VVLDEAD ML+MGF E +  IL+ +
Sbjct:   113 QIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172

Query:   357 SLARQMVMFSATWPIEVHKLAEEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ 415
                 Q ++FSAT P  + ++AE +M +P  +KV    E    N  + Q    + ++ +  
Sbjct:   173 PETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKA-KEVTMPN--IQQFYLEVQEKKKFD 229

Query:   416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLF 475
              L  LL+          +VF   +   D L   L   G+    IHG   Q +R   L  F
Sbjct:   230 VLTRLLDI---QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKF 286

Query:   476 KEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTN 535
             KEG+  ++VATDVAARGLDI  V  V N+  P   E YVHRIGRTGRAGKKG++  F T 
Sbjct:   287 KEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTP 346

Query:   536 HNKALAGELVNVLREARQ 553
                  +G+L N+ R  ++
Sbjct:   347 RE---SGQLKNIERTTKR 361


>UNIPROTKB|Q81IT9 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
            STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
            GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
            PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
        Length = 533

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 143/378 (37%), Positives = 204/378 (53%)

Query:   179 LKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             + +F E  L D +L   ++  F+  +PIQ+   P  L G+D IG A+TG+GKT AFG+P 
Sbjct:     1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP- 59

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQP 296
             ++  +   K    G       +V++PTRELA Q+ + L   GK   V+ + +YGG     
Sbjct:    60 LLDKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINR 112

Query:   297 QITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356
             QI AL+    I++GTPGR++D I      L  V  VVLDEAD ML+MGF E +  IL+ +
Sbjct:   113 QIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172

Query:   357 SLARQMVMFSATWPIEVHKLAEEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ 415
                 Q ++FSAT P  + ++AE +M +P  +KV    E    N  + Q    + ++ +  
Sbjct:   173 PETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKA-KEVTMPN--IQQFYLEVQEKKKFD 229

Query:   416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLF 475
              L  LL+          +VF   +   D L   L   G+    IHG   Q +R   L  F
Sbjct:   230 VLTRLLDI---QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKF 286

Query:   476 KEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTN 535
             KEG+  ++VATDVAARGLDI  V  V N+  P   E YVHRIGRTGRAGKKG++  F T 
Sbjct:   287 KEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTP 346

Query:   536 HNKALAGELVNVLREARQ 553
                  +G+L N+ R  ++
Sbjct:   347 RE---SGQLKNIERTTKR 361


>UNIPROTKB|Q81VG0 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
            HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
            EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
            EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
            GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
            BioCyc:BANT260799:GJAJ-255-MONOMER
            BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
        Length = 528

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 143/378 (37%), Positives = 204/378 (53%)

Query:   179 LKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             + +F E  L D +L   ++  F+  +PIQ+   P  L G+D IG A+TG+GKT AFG+P 
Sbjct:     1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP- 59

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQP 296
             ++  +   K    G       +V++PTRELA Q+ + L   GK   V+ + +YGG     
Sbjct:    60 LLDKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINR 112

Query:   297 QITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356
             QI AL+    I++GTPGR++D I      L  V  VVLDEAD ML+MGF E +  IL+ +
Sbjct:   113 QIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172

Query:   357 SLARQMVMFSATWPIEVHKLAEEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ 415
                 Q ++FSAT P  + ++AE +M +P  +KV    E    N  + Q    + ++ +  
Sbjct:   173 PETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKA-KEVTMPN--IQQFYLEVQEKKKFD 229

Query:   416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLF 475
              L  LL+          +VF   +   D L   L   G+    IHG   Q +R   L  F
Sbjct:   230 VLTRLLDI---QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKF 286

Query:   476 KEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTN 535
             KEG+  ++VATDVAARGLDI  V  V N+  P   E YVHRIGRTGRAGKKG++  F T 
Sbjct:   287 KEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTP 346

Query:   536 HNKALAGELVNVLREARQ 553
                  +G+L N+ R  ++
Sbjct:   347 RE---SGQLKNIERTTKR 361


>TIGR_CMR|BA_0247 [details] [associations]
            symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
            HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
            EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
            EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
            GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
            BioCyc:BANT260799:GJAJ-255-MONOMER
            BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
        Length = 528

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 143/378 (37%), Positives = 204/378 (53%)

Query:   179 LKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             + +F E  L D +L   ++  F+  +PIQ+   P  L G+D IG A+TG+GKT AFG+P 
Sbjct:     1 MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP- 59

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQP 296
             ++  +   K    G       +V++PTRELA Q+ + L   GK   V+ + +YGG     
Sbjct:    60 LLDKVDTHKESVQG-------IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINR 112

Query:   297 QITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356
             QI AL+    I++GTPGR++D I      L  V  VVLDEAD ML+MGF E +  IL+ +
Sbjct:   113 QIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172

Query:   357 SLARQMVMFSATWPIEVHKLAEEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ 415
                 Q ++FSAT P  + ++AE +M +P  +KV    E    N  + Q    + ++ +  
Sbjct:   173 PETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKA-KEVTMPN--IQQFYLEVQEKKKFD 229

Query:   416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLF 475
              L  LL+          +VF   +   D L   L   G+    IHG   Q +R   L  F
Sbjct:   230 VLTRLLDI---QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKF 286

Query:   476 KEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTN 535
             KEG+  ++VATDVAARGLDI  V  V N+  P   E YVHRIGRTGRAGKKG++  F T 
Sbjct:   287 KEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTP 346

Query:   536 HNKALAGELVNVLREARQ 553
                  +G+L N+ R  ++
Sbjct:   347 RE---SGQLKNIERTTKR 361


>CGD|CAL0000056 [details] [associations]
            symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
            transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
            ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
            KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
        Length = 539

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 141/407 (34%), Positives = 220/407 (54%)

Query:   145 SENGDDETISFFKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKNFK--NPS 202
             + N  + ++S         +     D  E K+K   +F E  L  D+L   ++ K   P+
Sbjct:    92 NHNQTESSLSSSSSTTSSSITTIDPDA-ELKFK---TFKELNLVPDLLESIESMKFTKPT 147

Query:   203 PIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSP 262
             PIQS A P  L G+D IG+A+TGSGKT AF +P +  +   ++            LVL+P
Sbjct:   148 PIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPY--------FALVLAP 199

Query:   263 TRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN 322
             TREL  QI D  +  G   G++S C+ GG     Q   L     +++ TPGR++D +E  
Sbjct:   200 TRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIMDHLEHT 259

Query:   323 V-CHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYM 381
                 L  + ++V+DEADR+LDM F   +  IL  I + R   +FSAT   ++ KL    +
Sbjct:   260 KGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSATMTNKIEKLQRASL 319

Query:   382 DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLE 441
               NPV+V V S+   A++ ++Q + +++D  ++  L+ LL ++       ++VF      
Sbjct:   320 H-NPVRVAVSSKYQTADN-LVQSMMLVNDGYKNTILIHLLNEF---MGKSIIVFTRTVAH 374

Query:   442 ADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVV 501
             A R   + R  G+  V +HG+ +Q +R  SL+ FK     ++VATDVAARGLDIP V+VV
Sbjct:   375 AQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVV 434

Query:   502 INYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVL 548
             INY  P  ++ Y+HR+GRT RAG+ G S +  T ++  +   + +VL
Sbjct:   435 INYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESVL 481


>UNIPROTKB|Q5L3G9 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
            OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
            ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
            KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
            BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
        Length = 467

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 146/377 (38%), Positives = 205/377 (54%)

Query:   179 LKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
             + +F E  L  +V+   +   F+  +PIQ+   P  L  +D IG A+TG+GKT AFG+P 
Sbjct:     1 MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI 60

Query:   237 MMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQP 296
             +  V  N K  AV        LV++PTRELA Q+ + L   G    V+ + +YGG   + 
Sbjct:    61 VEKV--NVKNSAVQ------ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIER 112

Query:   297 QITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356
             QI AL+    +++GTPGR+ID I      L  V  VVLDEAD ML+MGF E +  ILS +
Sbjct:   113 QIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHV 172

Query:   357 SLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQR 416
                RQ ++FSAT P  + ++AE +M+  P  V V ++++   +     +EV + +  D  
Sbjct:   173 PAERQTLLFSATMPDPIRRIAERFMN-EPELVKVKAKEMTVPNIQQYYLEVHEKKKFDI- 230

Query:   417 LLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFK 476
             L  LL+          +VF   +   D L   L   G+    IHG  +Q +R   L  FK
Sbjct:   231 LTRLLDI---QAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFK 287

Query:   477 EGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNH 536
             EG   ++VATDVAARGLDI  V  V N+  P   E YVHRIGRTGRAGK GV+ TF T  
Sbjct:   288 EGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPR 347

Query:   537 NKALAGELVNVLREARQ 553
                  G+L ++ R  ++
Sbjct:   348 E---IGQLHHIERTTKR 361


>UNIPROTKB|Q9KLE2 [details] [associations]
            symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
            process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
            ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
            KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
            Uniprot:Q9KLE2
        Length = 663

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 137/332 (41%), Positives = 195/332 (58%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             F +P+PIQ+ A P LL GRD +G A+TG+GKT AF +P     L N+   +  K   P  
Sbjct:    46 FVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLP-----LLNKLNLSQYK---PQA 97

Query:   258 LVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
             +V++PTRELA Q+   + + G+   G+K + +YGG S   Q+ AL+SG  IV+GTPGR+ 
Sbjct:    98 IVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTPGRVK 157

Query:   317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKL 376
             DLI  +  HL E    +LDEAD ML MGF + V +I+ +   + Q V+FSAT P  V ++
Sbjct:   158 DLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEI 217

Query:   377 AEEYMDPNPVKV-VVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVF 435
              E ++  NP  V V GS    A   V Q   V+    +D+ +  LLE     + +  +VF
Sbjct:   218 VERFLR-NPECVDVAGSNQTVAK--VEQQYWVVKGVEKDEAMARLLET---EETDASIVF 271

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                + + +RL + L   G+K  A+HG   Q  R +++   K+G   ++VATDV ARGLD+
Sbjct:   272 VRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDV 331

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKG 527
             P +  V NY  P   E Y+HRIGRTGRAG+KG
Sbjct:   332 PRITHVYNYDIPFDVESYIHRIGRTGRAGRKG 363


>TIGR_CMR|VC_A0804 [details] [associations]
            symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
            ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
            KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
            Uniprot:Q9KLE2
        Length = 663

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 137/332 (41%), Positives = 195/332 (58%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             F +P+PIQ+ A P LL GRD +G A+TG+GKT AF +P     L N+   +  K   P  
Sbjct:    46 FVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLP-----LLNKLNLSQYK---PQA 97

Query:   258 LVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
             +V++PTRELA Q+   + + G+   G+K + +YGG S   Q+ AL+SG  IV+GTPGR+ 
Sbjct:    98 IVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTPGRVK 157

Query:   317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKL 376
             DLI  +  HL E    +LDEAD ML MGF + V +I+ +   + Q V+FSAT P  V ++
Sbjct:   158 DLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEI 217

Query:   377 AEEYMDPNPVKV-VVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVF 435
              E ++  NP  V V GS    A   V Q   V+    +D+ +  LLE     + +  +VF
Sbjct:   218 VERFLR-NPECVDVAGSNQTVAK--VEQQYWVVKGVEKDEAMARLLET---EETDASIVF 271

Query:   436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
                + + +RL + L   G+K  A+HG   Q  R +++   K+G   ++VATDV ARGLD+
Sbjct:   272 VRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDV 331

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKG 527
             P +  V NY  P   E Y+HRIGRTGRAG+KG
Sbjct:   332 PRITHVYNYDIPFDVESYIHRIGRTGRAGRKG 363


>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
            symbol:PF08_0096 "RNA helicase, putative"
            species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
            activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
            HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
            ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
            EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
            EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
            ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
        Length = 941

 Score = 331 (121.6 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 75/199 (37%), Positives = 116/199 (58%)

Query:   358 LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRL 417
             + RQ +MFSAT+  E+  LA+EY+      ++VG    + N  + Q +  +++ ++   L
Sbjct:   579 IKRQTIMFSATFRKEIQVLAKEYLCKYTF-LLVGKVG-STNEYIKQNLVFVEEENKCNYL 636

Query:   418 LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE 477
             L LL +   +     ++F   + +AD +E  L       V IHG K+Q ER ++L LFK 
Sbjct:   637 LNLLAE---NNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALKLFKR 693

Query:   478 GTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN 537
             G   ++VATDVAARGLDI +++ VIN+  P   +DY+HRIGRTGRAG  G++ +F    N
Sbjct:   694 GIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNEDN 753

Query:   538 KALAGELVNVLREARQVVP 556
             K +  +L+  L E  Q +P
Sbjct:   754 KNIFKDLLATLEECNQQIP 772

 Score = 313 (115.2 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 73/174 (41%), Positives = 104/174 (59%)

Query:   197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV-----GK 251
             N+   +PIQ ++   ++N  D IG+A+TGSGKT  + +P + H+L N   K        K
Sbjct:   381 NYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKHTYYEQNNK 440

Query:   252 RVN--------PLCLVLSPTRELADQIYDVLNDAGKPC---GVKSVCVYGGTSKQPQITA 300
               N        P+CL+L+PTRELA QI+    DA K C   G+K V +YGG + + Q++ 
Sbjct:   441 TSNYYFNRVCLPICLILAPTRELAVQIF---YDAKKFCFETGIKPVVLYGGNNIKTQLSN 497

Query:   301 LRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
             L  G DI++ TPGRL D++E     L   +F+VLDEADRMLDMGF   +R I++
Sbjct:   498 LDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVN 551


>UNIPROTKB|Q8IAU1 [details] [associations]
            symbol:PF08_0096 "RNA helicase, putative" species:36329
            "Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
            HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
            ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
            EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
            EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
            ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
        Length = 941

 Score = 331 (121.6 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 75/199 (37%), Positives = 116/199 (58%)

Query:   358 LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRL 417
             + RQ +MFSAT+  E+  LA+EY+      ++VG    + N  + Q +  +++ ++   L
Sbjct:   579 IKRQTIMFSATFRKEIQVLAKEYLCKYTF-LLVGKVG-STNEYIKQNLVFVEEENKCNYL 636

Query:   418 LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE 477
             L LL +   +     ++F   + +AD +E  L       V IHG K+Q ER ++L LFK 
Sbjct:   637 LNLLAE---NNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALKLFKR 693

Query:   478 GTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN 537
             G   ++VATDVAARGLDI +++ VIN+  P   +DY+HRIGRTGRAG  G++ +F    N
Sbjct:   694 GIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNEDN 753

Query:   538 KALAGELVNVLREARQVVP 556
             K +  +L+  L E  Q +P
Sbjct:   754 KNIFKDLLATLEECNQQIP 772

 Score = 313 (115.2 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 73/174 (41%), Positives = 104/174 (59%)

Query:   197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV-----GK 251
             N+   +PIQ ++   ++N  D IG+A+TGSGKT  + +P + H+L N   K        K
Sbjct:   381 NYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKHTYYEQNNK 440

Query:   252 RVN--------PLCLVLSPTRELADQIYDVLNDAGKPC---GVKSVCVYGGTSKQPQITA 300
               N        P+CL+L+PTRELA QI+    DA K C   G+K V +YGG + + Q++ 
Sbjct:   441 TSNYYFNRVCLPICLILAPTRELAVQIF---YDAKKFCFETGIKPVVLYGGNNIKTQLSN 497

Query:   301 LRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
             L  G DI++ TPGRL D++E     L   +F+VLDEADRMLDMGF   +R I++
Sbjct:   498 LDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVN 551


>DICTYBASE|DDB_G0281711 [details] [associations]
            symbol:ddx27 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
            GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
            EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
            STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
            KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
        Length = 783

 Score = 547 (197.6 bits), Expect = 1.9e-55, Sum P(2) = 1.9e-55
 Identities = 144/438 (32%), Positives = 230/438 (52%)

Query:   160 DDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRD 217
             D  +V+ + + +K+   + L +F E  L   +L   +   F  P+PIQ+ A P  LNG+D
Sbjct:   170 DKIKVLQSNRKLKKIVEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKD 229

Query:   218 FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277
              +  A TGSGKT AF +P +  +L  R  +    RV    L+L PTRELA Q   V+ + 
Sbjct:   230 ILASASTGSGKTAAFLLPVLERLLF-RDSEYRAIRV----LILLPTRELALQCQSVMENL 284

Query:   278 GKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID-LIEMNVCHLSEVSFVVLDE 336
              +   + S  + GG S + Q   LR   D+VI TPGRLID L+  +   L ++  ++LDE
Sbjct:   285 AQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDE 344

Query:   337 ADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLA 396
             ADR+LDMGF++ +  I+      RQ ++FSAT   EV  LA+  +   P++V V +    
Sbjct:   345 ADRLLDMGFKDEINKIVESCPTNRQTMLFSATLNDEVKTLAKLSLQ-QPIRVQVDALMQV 403

Query:   397 ANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKV 456
              +    + V++      D+  + L        +   ++F   + E  RL  +   S  K 
Sbjct:   404 TSTLEQEFVKIKPQHLSDRPAILLSLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKA 463

Query:   457 VAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHR 516
               +HG  +Q +R  SL  F++G    ++A+DVA+RGLDI  V+ VINY+ P    +Y+HR
Sbjct:   464 AELHGNLSQEQRFDSLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHR 523

Query:   517 IGRTGRAGKKGVSHTFFTNHNKALAGELVNVLR---EARQVVPDALLKFGTHVKKKESKL 573
             +GRT RAG  G S +F T++++ L  ++V   R   ++R V  D +  +   +++    +
Sbjct:   524 VGRTARAGMDGKSCSFITDNDRKLLKDIVTKARNKAKSRSVSQDNVNFWRNRIEELTEDI 583

Query:   574 YGAHFREIS-ADAPKAKK 590
                   E+  AD  KA+K
Sbjct:   584 KSIVREEMKEADLRKAEK 601

 Score = 44 (20.5 bits), Expect = 1.9e-55, Sum P(2) = 1.9e-55
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query:   144 ESENGDDETIS--FFKEEDD 161
             + EN DDE +   FF EE D
Sbjct:    40 DDENDDDEDLKEDFFFEESD 59


>UNIPROTKB|B2C6E9 [details] [associations]
            symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
            [GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
        Length = 704

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 147/411 (35%), Positives = 226/411 (54%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKNFKNPSPIQSHAWPFLLNG 215
             F + D   V V+G D   A     ++     L +D+      +   +P+Q +  P +L G
Sbjct:   246 FDKYDTILVEVSGHDAPPAILTFEETDLCQTLNNDITKA--GYTKLTPVQKYGIPIILAG 303

Query:   216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGK---RVNPLCLVLSPTRELADQIY- 271
             RD +  A+TGSGKT AF +P + H++  R G    +   +  P C++++PTREL +QI+ 
Sbjct:   304 RDLMACAQTGSGKTAAFLLPILAHMM--RDGVTASRFKDQQEPECIIVAPTRELINQIFL 361

Query:   272 DVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331
             +    +   C V+ V +YGGT     I  +  G +I+  TPGRL+D+I      L ++ +
Sbjct:   362 EARKFSFGTC-VRPVVIYGGTQLGHSIRQIMQGCNILCATPGRLMDIIGKEKIGLGQIRY 420

Query:   332 VVLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHK-LAEEYMDPNPV 386
             +VLDEADRMLDMGF   ++ ++S   +     RQ +MFSAT+P    K  A E++    +
Sbjct:   421 LVLDEADRMLDMGFGPEMKKLISFPGMPSKEQRQTLMFSATFPRGNFKDWAGEFLKNLTI 480

Query:   387 KVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLE 446
              +V   +   A  DV Q V  +   S+ ++L+ +L    +    R +VF   + +AD + 
Sbjct:   481 CLVAVGQVGGACSDVQQTVLQVGQYSKREKLVEILRNIGEE---RTMVFVETKKKADFIA 537

Query:   447 NMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSF 506
               L +      +IHG + Q ER ++L  F+ G CP++VAT VAARGLDI +V+ VIN+  
Sbjct:   538 TFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDL 597

Query:   507 PLTTEDYVHRIGRTGRAGKKGVSHTFFTNH-NKALAGELVNVLREARQVVP 556
             P T ++YVHRIGRTGR G  G + +FF    +  LA  LV VL +A+Q  P
Sbjct:   598 PSTIDEYVHRIGRTGRCGNTGKAISFFDPEPDSHLAQPLVKVLSDAQQGCP 648


>DICTYBASE|DDB_G0280147 [details] [associations]
            symbol:ddx47 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
            GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
            EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
            RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
            EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
            Uniprot:Q54VT4
        Length = 546

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 151/424 (35%), Positives = 222/424 (52%)

Query:   143 KESENGD-DETISFFKEEDDGQVVV----TGKDVKEAKYKALKSFTESKL---PDDVLGC 194
             KE +N + DE     KEE++ ++      T +   E + K  ++ T   L   P  +  C
Sbjct:    75 KEIKNEELDEDSLLEKEEEEKEIEEFINNTNQKKSEEEEKKYENVTFESLGVHPQIIDAC 134

Query:   195 CK-NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRV 253
              K  F  P  IQ  + P+ L GRD IG+A+TGSGKT AF +P +  +L   +G       
Sbjct:   135 NKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLEAPQGL------ 188

Query:   254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPG 313
                CL L+PTRELA QI D  N  G   GVK+  + GG     Q  AL     +V+G+PG
Sbjct:   189 --FCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPG 246

Query:   314 RLIDLIEMNV-CHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIE 372
             R++  +E     +L  + + ++DEADR+    FEE V  IL  I   R   +FSAT   +
Sbjct:   247 RVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERNTYLFSATMTSK 306

Query:   373 VHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRV 432
             V KL    +  NPVKV V S+    +  + Q + V   + +D  L  +L +      N  
Sbjct:   307 VAKLQRASL-VNPVKVQVASKYQTVDTLLQQYLFV-PFKYKDCYLAYILNEL---AGNLT 361

Query:   433 LVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARG 492
             ++F      + ++  MLR  G+  + I+G   Q +R  SL+ FK+GT  ++VATDVAARG
Sbjct:   362 IIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSILVATDVAARG 421

Query:   493 LDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREAR 552
             LDIP V++VINY  P  +++YVHR+GRT RAG  G + T  T ++  +   +  VL++  
Sbjct:   422 LDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQRIEFVLKKKL 481

Query:   553 QVVP 556
                P
Sbjct:   482 DSFP 485


>UNIPROTKB|Q0C354 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase RhlE"
            species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
            GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
            GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
            BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
        Length = 464

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 133/333 (39%), Positives = 184/333 (55%)

Query:   201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV-GKRVNPLCLV 259
             P+PIQ  A P ++ GRD +G+A+TG+GKT+AF  P +  +  N     V G RV    LV
Sbjct:    30 PTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRLSRNASPAPVRGTRV----LV 85

Query:   260 LSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLI 319
             L+PTRELA QI       G    ++ V V GG     QI  L  G  I++ TPGRLIDL+
Sbjct:    86 LAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLERGAHILVATPGRLIDLM 145

Query:   320 EMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEE 379
             E     L +V  ++LDEAD+MLD+GF   +R I   +   RQ + FSAT P  V  LA  
Sbjct:   146 EQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQTLFFSATMPKAVESLAAT 205

Query:   380 YMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQ 439
             ++  NP +V V      A     ++  V     + ++   L+EK    +    +VF   +
Sbjct:   206 FLR-NPAEVSVAPPATTAGRIEQRVCFV----EQPEKASLLIEKIRDPELRSAIVFTRTK 260

Query:   440 LEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVE 499
               AD +   L ++    VAIHG K+Q +R K+L  FK G  P++VATD+AARG+ +  + 
Sbjct:   261 HGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATDIAARGIHVDALT 320

Query:   500 VVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTF 532
              VINY  P   E +VHRIGRT RAG  GV+ +F
Sbjct:   321 HVINYDLPDVPEQFVHRIGRTARAGNSGVAISF 353


>UNIPROTKB|Q8EIE5 [details] [associations]
            symbol:dbpA "ATP-dependent RNA helicase DbpA"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
            OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
            HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
            GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
        Length = 458

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 145/386 (37%), Positives = 218/386 (56%)

Query:   181 SFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMM 238
             +F+  KL  ++L    +  +   +PIQ+ + P +L G D IG  KTGSGKT AFG+  + 
Sbjct:     2 AFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL- 60

Query:   239 HVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQ 297
                     K   KR     LVL PTRELADQ+   +    +    VK + + GG    PQ
Sbjct:    61 -------NKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQ 113

Query:   298 ITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357
             I +L  G  I++GTPGR++D ++ N   LS ++ +VLDEADRML+MGF+  +  I+ +  
Sbjct:   114 IGSLEHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSP 173

Query:   358 LARQMVMFSATWPIEVHKLAEEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQR 416
               RQ ++FSAT+P ++  +A++ M +P  VK  V  E         Q+    DD+SR Q 
Sbjct:   174 RERQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLD---DDKSRMQA 230

Query:   417 L-LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLF 475
             L L LLE  HK +    +VF   + E  ++ + L   G+ V+A+HG   Q +R ++L  F
Sbjct:   231 LQLLLLE--HKPES--AVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQF 286

Query:   476 KEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTN 535
                +  ++VATDVAARGLDI  ++ V NY     TE ++HRIGRTGRAG KG ++TF+ +
Sbjct:   287 ANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYND 346

Query:   536 HNKALAGELVNVLREA--RQVVPDAL 559
              +    G  + +L E   R++  ++L
Sbjct:   347 QD----GYKIALLEEYLDREITSESL 368


>TIGR_CMR|CPS_3401 [details] [associations]
            symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
            STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
            OMA:HLIKEHQ ProtClustDB:CLSK907013
            BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
        Length = 432

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 133/354 (37%), Positives = 202/354 (57%)

Query:   181 SFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMM 238
             +FTE  L   +L       +  P+PIQ+ A P +  GRD I  A TGSGKT  F +P + 
Sbjct:     9 TFTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQ 68

Query:   239 HVLSNRKGKAVGKRVNPLC-LVLSPTRELADQIYDVLNDAGKPCG--VKSVCVYGGTSKQ 295
              +  +    +   + N +  LVL PTRELA Q+ D +          +K++ V+GG S  
Sbjct:    69 KLREDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVN 128

Query:   296 PQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSK 355
              Q+ ALR GVDI++ TPGRL+DLI  N   L +V  +VLDEADRML +GF E +  +L+ 
Sbjct:   129 IQMLALRGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLAL 188

Query:   356 ISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ 415
                 +Q ++FSAT+P +V  L +E ++ NP+++ + S D  A+  V ++  V    ++ +
Sbjct:   189 TPKKKQTLLFSATFPEQVTTLTQELLN-NPIEIQLQSAD--ASTLVQRVFTV----NKGE 241

Query:   416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLF 475
             +   L     + Q  + L+F   +   + L   L + G      HG K Q ER++ L  F
Sbjct:   242 KTAVLAHLIQQEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGF 301

Query:   476 KEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS 529
             K G   +++ATD+AARGLDI  + VVIN++ P +  DY+HRIGR+GRAG+ G++
Sbjct:   302 KAGDIEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLA 355


>TIGR_CMR|SO_0897 [details] [associations]
            symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
            OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
            HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
            GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
        Length = 458

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 145/386 (37%), Positives = 218/386 (56%)

Query:   181 SFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMM 238
             +F+  KL  ++L    +  +   +PIQ+ + P +L G D IG  KTGSGKT AFG+  + 
Sbjct:     2 AFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL- 60

Query:   239 HVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQ 297
                     K   KR     LVL PTRELADQ+   +    +    VK + + GG    PQ
Sbjct:    61 -------NKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQ 113

Query:   298 ITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357
             I +L  G  I++GTPGR++D ++ N   LS ++ +VLDEADRML+MGF+  +  I+ +  
Sbjct:   114 IGSLEHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSP 173

Query:   358 LARQMVMFSATWPIEVHKLAEEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQR 416
               RQ ++FSAT+P ++  +A++ M +P  VK  V  E         Q+    DD+SR Q 
Sbjct:   174 RERQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLD---DDKSRMQA 230

Query:   417 L-LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLF 475
             L L LLE  HK +    +VF   + E  ++ + L   G+ V+A+HG   Q +R ++L  F
Sbjct:   231 LQLLLLE--HKPES--AVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQF 286

Query:   476 KEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTN 535
                +  ++VATDVAARGLDI  ++ V NY     TE ++HRIGRTGRAG KG ++TF+ +
Sbjct:   287 ANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYND 346

Query:   536 HNKALAGELVNVLREA--RQVVPDAL 559
              +    G  + +L E   R++  ++L
Sbjct:   347 QD----GYKIALLEEYLDREITSESL 368


>TIGR_CMR|VC_2564 [details] [associations]
            symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
            KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
            OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
            DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
            Uniprot:Q9KP15
        Length = 460

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 141/363 (38%), Positives = 209/363 (57%)

Query:   181 SFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMM 238
             SF    L  ++L   +   F   +PIQ+ + P +L G+D IG  KTGSGKT AFG    +
Sbjct:     5 SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFG----L 60

Query:   239 HVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQ 297
              VLSN   K    RV    LVL PTRELADQ+   +   G+    +K + + GG    PQ
Sbjct:    61 GVLSNLNVKRF--RVQ--ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQ 116

Query:   298 ITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357
             I +L  G  I++GTPGR++D +  +   LSE++ +VLDEADRML+MGF+E +  I++   
Sbjct:   117 IGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAP 176

Query:   358 LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQI----VEVLDDRSR 413
               RQ ++FSAT+P  + ++A+  +  N + + V      A HD   I     +V    +R
Sbjct:   177 AERQTLLFSATYPASIEQIAQS-VTRNALMIKV-----EATHDTSSIRQYFYKVEGSAAR 230

Query:   414 DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLS 473
             D+ L  LL  +H  Q    +VF   + E   + + L +SG+ V+ +HG   Q ER ++L 
Sbjct:   231 DEALETLL-LHH--QPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALV 287

Query:   474 LFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFF 533
              F   +  ++VATDVAARGLD+ +++ V NY      E +VHRIGRTGRAG KG++ +FF
Sbjct:   288 QFANKSISILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFF 347

Query:   534 TNH 536
             +++
Sbjct:   348 SDN 350


>UNIPROTKB|P96614 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
            "response to cold" evidence=IGI] [GO:0010501 "RNA secondary
            structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
            evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
            GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
            EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
            ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
            EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
            PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
            GO:GO:0010501 Uniprot:P96614
        Length = 494

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 135/362 (37%), Positives = 199/362 (54%)

Query:   181 SFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMM 238
             +F +  L  D++       F+  +PIQ+   P  L+ +D IG A+TG+GKT AFG+P + 
Sbjct:     4 TFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVE 63

Query:   239 HVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQI 298
              +  N +        N   +V++PTRELA Q+ + L   G+    K + +YGG     QI
Sbjct:    64 KI--NPESP------NIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQI 115

Query:   299 TALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL 358
              AL+   +I++GTPGRL+D I      L+ V+ VV+DEAD ML+MGF + +  ILS +  
Sbjct:   116 RALKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPS 175

Query:   359 ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLL 418
               Q ++FSAT P  + ++AE +M   P  V V ++++  ++ + Q    + +R +   L 
Sbjct:   176 EHQTLLFSATMPAPIKRIAERFMT-EPEHVKVKAKEMTVSN-IQQFYLEVQERKKFDTLT 233

Query:   419 ALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEG 478
              LL+          +VF   +   D L   L   G+    IHG   Q +R  +L  FKEG
Sbjct:   234 RLLDI---QSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEG 290

Query:   479 TCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNK 538
                ++VATDVAARGLDI  V  V N+  P   E YVHRIGRTGRAGK G++ TF T   K
Sbjct:   291 AIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREK 350

Query:   539 AL 540
             ++
Sbjct:   351 SM 352


>ZFIN|ZDB-GENE-050208-665 [details] [associations]
            symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
            Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
            IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
            Uniprot:F1R8P9
        Length = 584

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 136/379 (35%), Positives = 214/379 (56%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             ++ P+P+Q    P  L GRD I  A TGSGKT+AF +P +M  L +           P C
Sbjct:   190 YEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRALQSESASPSC----PAC 245

Query:   258 LVLSPTRELADQIYDVLNDA--GKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL 315
             L+L+PTRELA QI +   +   G P  +++  + GG    PQ+  L+  + IVIGTPGRL
Sbjct:   246 LILTPTRELAIQIEEQAKELMRGLP-NMRTALLVGGMPLPPQLHRLKHNIKIVIGTPGRL 304

Query:   316 IDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHK 375
             +++++     L  V  VV+DEAD ML MGF++ V  IL ++    Q ++ SAT P    +
Sbjct:   305 LEILKQKAVQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPEDHQTLLTSATIPTGTQQ 364

Query:   376 LAEEYMDPNPVKVVVGSEDL-AANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLV 434
             LAE  +  +PV + +G ++   AN  V QIV  +++ S+ ++L  +L    K  +  V+V
Sbjct:   365 LAER-LTHDPVTITIGQKNQPCAN--VRQIVLWVEEPSKKKKLFEILND-EKLYQPPVVV 420

Query:   435 FALYQLEADRL-ENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGL 493
             F   +L AD L E + +      VAIH  K Q ER K +    EG   ++++T +  RGL
Sbjct:   421 FVDCKLGADLLCEAVQKVMSLNTVAIHSDKMQWERNKIVKGLLEGQFDVVISTGILGRGL 480

Query:   494 DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQ 553
             D+ +V++VIN+  P   ++YVH+IGR GR G +G + TF  N+NK L  E+V  ++    
Sbjct:   481 DLVNVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAITFMNNNNKRLFLEMVKRVKPTGS 540

Query:   554 VVPDALLKFGTHVKKKESK 572
             ++P  +L    H+ +++ +
Sbjct:   541 ILPPQILN-SPHLHEQQRR 558


>UNIPROTKB|E2R4Y9 [details] [associations]
            symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
            Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
        Length = 623

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 142/415 (34%), Positives = 230/415 (55%)

Query:   164 VVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGI 221
             +VV G+DV     + +  F     P+ +    K   ++ P+PIQ    P  L GRD +  
Sbjct:   192 IVVQGQDVT----RPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLAS 247

Query:   222 AKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND--AGK 279
             A TGSGKT AF +P +   L   K         P  L+L+PTRELA QI +   +  +G 
Sbjct:   248 ADTGSGKTAAFLLPVITRALCESK--------TPSALILTPTRELAIQIENQAKELMSGL 299

Query:   280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADR 339
             P  +K+V + GG    PQ+  LR  V ++I TPGRL+D+I+ +   L  +  VV+DEAD 
Sbjct:   300 P-RMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVELCGIKIVVVDEADT 358

Query:   340 MLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANH 399
             ML MGF++ V  IL  +    Q ++ SAT P  + +LA + +  NPV+++ G ++L  + 
Sbjct:   359 MLKMGFQQQVLDILEHVPNDSQTILVSATIPTSIEQLASQLLH-NPVRIITGEKNLPCS- 416

Query:   400 DVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRR-SGWKVVA 458
              V QI+  +++ ++ ++L  +L    K  +  VLVF   +L AD L   +++ +G K V+
Sbjct:   417 SVRQIILWVEEPAKKKKLFEILND-KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVS 475

Query:   459 IHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIG 518
             IH +K+Q ER   L    EG   ++V+T V  RGLD+  V +V+N+  P + ++YVH++G
Sbjct:   476 IHSEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQVG 535

Query:   519 RTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFG-THVKKKESK 572
             R GR G+ G + TF  N++K L  ++   ++    ++P  LL     H +K++ +
Sbjct:   536 RVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLLNSPYLHDQKRKEQ 590


>UNIPROTKB|Q5T1V6 [details] [associations]
            symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
            binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
            GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
            IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
            UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
            SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
            PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
            Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
            CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
            neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
            HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
            EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
            ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
            Genevestigator:Q5T1V6 Uniprot:Q5T1V6
        Length = 619

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 146/416 (35%), Positives = 232/416 (55%)

Query:   164 VVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGI 221
             ++V G++V     + +  F    LP+ +    K   ++ P+PIQ    P  L GRD +  
Sbjct:   191 ILVQGQEVT----RPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILAS 246

Query:   222 AKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND--AGK 279
             A TGSGKT AF +P +M  L   K         P  L+L+PTRELA QI     +  +G 
Sbjct:   247 ADTGSGKTAAFLLPVIMRALFESK--------TPSALILTPTRELAIQIERQAKELMSGL 298

Query:   280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADR 339
             P  +K+V + GG    PQ+  L+  V ++I TPGRL+D+I+ +   L  V  VV+DEAD 
Sbjct:   299 P-RMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADT 357

Query:   340 MLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDL-AAN 398
             ML MGF++ V  IL  I    Q ++ SAT P  + +LA + +  NPV+++ G ++L  AN
Sbjct:   358 MLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLH-NPVRIITGEKNLPCAN 416

Query:   399 HDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRR-SGWKVV 457
               V QI+  ++D ++ ++L  +L    K  +  VLVF   +L AD L   +++ +G K +
Sbjct:   417 --VRQIILWVEDPAKKKKLFEILND-KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSI 473

Query:   458 AIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRI 517
             +IH +K+Q ER   L    EG   ++V+T V  RGLD+  V +V+N+  P + ++YVH+I
Sbjct:   474 SIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQI 533

Query:   518 GRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFG-THVKKKESK 572
             GR GR G+ G + TF  N++K L  ++   ++    ++P  LL     H +K++ +
Sbjct:   534 GRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLLNSPYLHDQKRKEQ 589


>UNIPROTKB|Q48AV0 [details] [associations]
            symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
            GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
            BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
        Length = 420

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 136/335 (40%), Positives = 196/335 (58%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             +  P+ IQ  + P +L   D +  A+TG+GKT AF +P +  ++S +  K   +      
Sbjct:    25 YDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQPCKPELR-----A 79

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             LVL+PTRELA Q++      G+   V     YGG S + QI+ L+ GVDI+I TPGRL+D
Sbjct:    80 LVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLLD 139

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
             L+      LS +  +V DEADRMLDMGF+E +  I   +   +Q ++FSAT+  +++K++
Sbjct:   140 LLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFADDIYKMS 199

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD-DRSRDQRLLALLEKYHKSQRN--RVLV 434
             +  +   P  V +  ++ AA+ DV Q+V  +D DR R+      L  +    RN  +VLV
Sbjct:   200 KNIL-VEPKMVEIDEKNKAAD-DVEQLVYGVDADRKRE------LTSFLIGSRNWKQVLV 251

Query:   435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494
             F   +  AD L   + + G K +AIHG K+Q  R K+L  FKEG    ++ATDVAARG+D
Sbjct:   252 FTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARGID 311

Query:   495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS 529
             I  +  VINY  P   EDYVHRIGRT RAG  G++
Sbjct:   312 IKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLA 346


>TIGR_CMR|CPS_0042 [details] [associations]
            symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
            GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
            BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
        Length = 420

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 136/335 (40%), Positives = 196/335 (58%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             +  P+ IQ  + P +L   D +  A+TG+GKT AF +P +  ++S +  K   +      
Sbjct:    25 YDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQPCKPELR-----A 79

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             LVL+PTRELA Q++      G+   V     YGG S + QI+ L+ GVDI+I TPGRL+D
Sbjct:    80 LVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLLD 139

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
             L+      LS +  +V DEADRMLDMGF+E +  I   +   +Q ++FSAT+  +++K++
Sbjct:   140 LLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFADDIYKMS 199

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD-DRSRDQRLLALLEKYHKSQRN--RVLV 434
             +  +   P  V +  ++ AA+ DV Q+V  +D DR R+      L  +    RN  +VLV
Sbjct:   200 KNIL-VEPKMVEIDEKNKAAD-DVEQLVYGVDADRKRE------LTSFLIGSRNWKQVLV 251

Query:   435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494
             F   +  AD L   + + G K +AIHG K+Q  R K+L  FKEG    ++ATDVAARG+D
Sbjct:   252 FTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARGID 311

Query:   495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS 529
             I  +  VINY  P   EDYVHRIGRT RAG  G++
Sbjct:   312 IKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLA 346


>TIGR_CMR|CPS_1590 [details] [associations]
            symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
            STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
            OMA:AISECGY ProtClustDB:CLSK768209
            BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
        Length = 455

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 140/361 (38%), Positives = 200/361 (55%)

Query:   187 LPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVL-SN 243
             L  D+L   K   +KN +PIQ  A P +  G D +  A+TG+GKT AF +P +  +  +N
Sbjct:     8 LSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKAN 67

Query:   244 RKGK---------------AVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCV 288
                K               A G+ +    L+L+PTRELA+Q+ D +    +   +KS  V
Sbjct:    68 HAAKSSTTSTDENSAEEKSASGQAIR--ALILTPTRELANQVADNIKQFSQYLPIKSGVV 125

Query:   289 YGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEP 348
             YGG     Q   L+ G+D+++ TPGRL++ + +    LS+V F+VLDEADRMLDMGF   
Sbjct:   126 YGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTD 185

Query:   349 VRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVL 408
             +  +L  +    Q +MFSAT+   V  LA + +  +P  + V  E+  +      +  V 
Sbjct:   186 IEKLLLAVKHKHQTLMFSATFSDRVKSLANQLLK-SPKTISVSKENTTSGKIKQAVYWVT 244

Query:   409 DDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHER 468
             ++R R+  LL+ L   +  Q+  VLVFA  +  A+ L   L+  G K    HG K Q  R
Sbjct:   245 EERKRE--LLSELIGVNNWQQ--VLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGAR 300

Query:   469 TKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGV 528
              K+L  F EG   ++VATDVAARGLDIPD+  V+N+  P   EDYVHR+GRTGRAGK G 
Sbjct:   301 NKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGT 360

Query:   529 S 529
             +
Sbjct:   361 A 361


>UNIPROTKB|Q65N62 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
            EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
            ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
            EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
            GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
            GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
            PATRIC:18946609 ProtClustDB:CLSK886742
            BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
        Length = 487

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 137/360 (38%), Positives = 196/360 (54%)

Query:   181 SFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMM 238
             +F + +L  D+    K   F+  +PIQ+   P  L  +D IG A+TG+GKT AFG+P + 
Sbjct:     4 TFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVE 63

Query:   239 HVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQI 298
              +  N +        N   +V++PTRELA Q+ + L   G+    + + +YGG     QI
Sbjct:    64 KI--NPESP------NIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQI 115

Query:   299 TALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL 358
              AL+    I++GTPGRL+D I      L  V+ VVLDEAD ML+MGF E +  ILS +  
Sbjct:   116 RALKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPA 175

Query:   359 ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLL 418
               Q ++FSAT P  + ++AE +M  NP  V V ++++  ++ + Q    + +R +   L 
Sbjct:   176 EHQTLLFSATMPAPIKRIAERFMT-NPEHVKVKAKEMTVSN-IQQFYLEVHERKKFDTLT 233

Query:   419 ALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEG 478
              LL+          +VF   +   D L   L   G+    IHG   Q +R  +L  FK+G
Sbjct:   234 RLLDI---QSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQG 290

Query:   479 TCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNK 538
                ++VATDVAARGLDI  V  V N+  P   E YVHRIGRTGRAGK G++ TF T   K
Sbjct:   291 AIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREK 350


>TIGR_CMR|CPS_1418 [details] [associations]
            symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
            GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
            BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
        Length = 401

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 139/363 (38%), Positives = 204/363 (56%)

Query:   181 SFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMM 238
             SF+  KL   +L    +  +  P+ IQ  A P +L G+D I  A+TG+GKT +F +P + 
Sbjct:     2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLE 61

Query:   239 HVLSNRK--GKAV-GKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQ 295
              + S  K  GK +  KR+  L LV  PTRELA Q+   ++   K   + S+ +YGG   Q
Sbjct:    62 QLNSQYKETGKKLRAKRIRALILV--PTRELAVQVEASISQYAKYLDISSMAMYGGVDAQ 119

Query:   296 PQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSK 355
              Q   L  GVDI++ TPGRL+D+    V H  E+  +VLDEADRMLDMGF + +  I+ +
Sbjct:   120 EQKQRLIWGVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIER 179

Query:   356 ISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ 415
             +   RQ ++FSAT   EV  LA+  +   PV++ +G+ D A+   + Q +  +D  ++  
Sbjct:   180 LPEHRQNLLFSATMSEEVRGLAKRTIH-KPVEISIGA-DKASKPKIEQWLVTVDKANKS- 236

Query:   416 RLLALLEKYHKSQR-NRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
                ALL     +Q   + L+F   +  A +L + L + G    +IH  +AQ  R K L+ 
Sbjct:   237 ---ALLSHIITTQNWQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILND 293

Query:   475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
             FK G    +VAT +AARGLDI ++  VINY  P   +DY+HRIGRTGRAG  G + +  +
Sbjct:   294 FKSGKIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVS 353

Query:   535 NHN 537
               N
Sbjct:   354 KDN 356


>UNIPROTKB|F1NQV5 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
            Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
        Length = 758

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 149/411 (36%), Positives = 220/411 (53%)

Query:   174 AKYKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIA 231
             ++Y    SF +  L   +L       FK P+PIQ    P  L G+D    A TG+GKT A
Sbjct:   174 SEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAA 233

Query:   232 FGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGG 291
             F +P +  ++   +   +  RV    LVL PTREL  Q++ V     +   V +    GG
Sbjct:   234 FILPVLERLIYKPRQAPI-TRV----LVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGG 288

Query:   292 TSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC---HLSEVSFVVLDEADRMLDMGFEEP 348
                + Q  ALRSG DI+I TPGRLID   ++ C   HLS V  ++LDEADRMLD  FEE 
Sbjct:   289 LDVKTQEAALRSGPDILIATPGRLID--HLHNCPSFHLSSVEVLILDEADRMLDEYFEEQ 346

Query:   349 VRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVL 408
             ++ I+   S  RQ ++FSAT   EV  LA   +  NP ++ V S    A     + + + 
Sbjct:   347 MKEIIRLCSRHRQTMLFSATMTEEVKDLASVSLK-NPTRIFVNSNTDVAPFLRQEFIRIR 405

Query:   409 DDRSRDQRLL--ALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQH 466
              +R  D+  +  ALL +      + V++F   + +A R+  +L   G +V  +HG  +Q 
Sbjct:   406 PNREGDREAIVSALLTRTFP---DHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQA 462

Query:   467 ERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKK 526
             +R ++L  FK+    ++VATDVAARGLDI  V+ VIN++ P TT+ YVHR+GRT RAG+ 
Sbjct:   463 QRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRA 522

Query:   527 GVSHTFFTNHNKALAGELVNVLR---EARQVVPDALLKFGTHVKKKESKLY 574
             G S +      + +  E+V   +   +AR +  D +LKF   ++  E  +Y
Sbjct:   523 GRSVSLVGEEERKMLKEIVKAAKTPVKARILPQDVILKFREKIENLEKDVY 573


>SGD|S000002651 [details] [associations]
            symbol:PRP28 "RNA helicase in the DEAD-box family"
            species:4932 "Saccharomyces cerevisiae" [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=TAS] [GO:0005681 "spliceosomal
            complex" evidence=TAS] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0000354 "cis
            assembly of pre-catalytic spliceosome" evidence=TAS] [GO:0005682
            "U5 snRNP" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000002651 GO:GO:0005524
            GO:GO:0005737 EMBL:BK006938 GO:GO:0005681 GO:GO:0005682
            GO:GO:0003676 EMBL:Z49701 GeneTree:ENSGT00690000102171
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
            RefSeq:NP_010529.3 GeneID:851830 KEGG:sce:YDR243C KO:K12858
            HOGENOM:HOG000268796 OrthoDB:EOG4KPXK0 EMBL:X56934 PIR:A39624
            RefSeq:NP_878065.3 ProteinModelPortal:P23394 SMR:P23394
            DIP:DIP-6324N IntAct:P23394 MINT:MINT-599541 STRING:P23394
            PaxDb:P23394 PeptideAtlas:P23394 EnsemblFungi:YDR243C
            GeneID:1466436 KEGG:sce:YDR246W-A CYGD:YDR243c OMA:HEMNERD
            NextBio:969715 Genevestigator:P23394 GermOnline:YDR243C
            Uniprot:P23394
        Length = 588

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 145/416 (34%), Positives = 230/416 (55%)

Query:   159 EDDGQVVVTGKDVKEAKYKALKSFTESKL-PDDVLGCC---KNFKNPSPIQSHAWPFLLN 214
             ++D  +V  G  V+      L+++ E  + P D+L        F +P+PIQ    P + N
Sbjct:   155 KEDYAIVTKGGTVENP----LRNWEELNIIPRDLLRVIIQELRFPSPTPIQRITIPNVCN 210

Query:   215 G---RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRV--NPLCLVLSPTRELADQ 269
                 RDF+G+A TGSGKT+AF +P ++  +S    +    ++   P  L+L+PTREL  Q
Sbjct:   211 MKQYRDFLGVASTGSGKTLAFVIPILIK-MSRSPPRPPSLKIIDGPKALILAPTRELVQQ 269

Query:   270 IYDVLNDAGKPCGVKS------VCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNV 323
             I        K    +S      + + GG S +    +L  G DI++ TPGRLID +E ++
Sbjct:   270 IQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHL 329

Query:   324 CHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA------RQMVMFSATWPIEVHKLA 377
               + +V  +VLDEAD+M+D+GFE+ V  IL+K+ +       RQ +MF+AT    + K+A
Sbjct:   330 LVMKQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIA 389

Query:   378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD-DRSRDQRLLALLEKYHKSQRNRVLVFA 436
               YM   PV   +G E   +   + Q+VE  D D  + ++L  ++ KY       +++F 
Sbjct:   390 AGYMQ-KPVYATIGVET-GSEPLIQQVVEYADNDEDKFKKLKPIVAKYDPP----IIIFI 443

Query:   437 LYQLEADRL-ENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
              Y+  AD L E   + +  KV  +HG K+Q +R  SL LF+     +M+AT+VAARGLDI
Sbjct:   444 NYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDI 503

Query:   496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTN-HNKALAGELVNVLRE 550
             P+V +V+N+      +DY+HRIGRTGRA  +G + +F +   +++L  EL   +R+
Sbjct:   504 PNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFVSAAEDESLIRELYKYVRK 559


>TAIR|locus:2173517 [details] [associations]
            symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
            "pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
            EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
            IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
            ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
            PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
            KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
            PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
            GermOnline:AT5G60990 Uniprot:Q8GY84
        Length = 456

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 135/365 (36%), Positives = 211/365 (57%)

Query:   173 EAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTI 230
             E + + +K+F E  + ++++  C+   +KNPS IQ+ A PF L G+D IG+A+TGSGKT 
Sbjct:     2 EEENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTG 61

Query:   231 AFGVP---AMMHVLSNRKGKAVGKRVNP--LCLVLSPTRELADQIYDVLNDAGKPCGVKS 285
             AF +P   A++  + + + K  G+R +P     VLSPTRELA QI +     G    ++ 
Sbjct:    62 AFAIPILQALLEYVYDSEPKK-GRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRC 120

Query:   286 VCVYGGTSKQPQITALRSGVDIVIGTPGRLID-LIEMNVCHLSEVSFVVLDEADRMLDMG 344
               + GG  +  Q  AL     +++ TPGRL D + +     L  + ++VLDEADR+L+  
Sbjct:   121 AVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNED 180

Query:   345 FEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQI 404
             FE+ +  IL +I L R+  +FSAT   +V KL    +  NPVK+   S+    +  + Q 
Sbjct:   181 FEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLR-NPVKIEAASKYSTVD-TLKQQ 238

Query:   405 VEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADR-LENMLRRSGWKVVAIHGKK 463
                +  + +D  L+ +L +  +S     ++F     +  R L  +LR  G++ + I G+ 
Sbjct:   239 YRFVAAKYKDCYLVYILSEMPESTS---MIFTR-TCDGTRFLALVLRSLGFRAIPISGQM 294

Query:   464 AQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRA 523
              Q +R  +L+ FK G C ++V TDVA+RGLDIP V+VVINY  P  ++DY+HR+GRT RA
Sbjct:   295 TQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARA 354

Query:   524 GKKGV 528
             G+ GV
Sbjct:   355 GRSGV 359


>TIGR_CMR|CPS_1726 [details] [associations]
            symbol:CPS_1726 "RNA helicase DeaD" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
            STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
            OMA:WIVKGVE ProtClustDB:CLSK741103
            BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
        Length = 611

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 132/356 (37%), Positives = 201/356 (56%)

Query:   181 SFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMM 238
             +F    LP+++L    +  F + + IQ+   P LL G+D +G A+TG+GKT AFG+PA+ 
Sbjct:    16 AFASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALA 75

Query:   239 HVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQ 297
              + ++ K         P  +VL+PTRELA Q+ + +   GK   G++   +YGG S  PQ
Sbjct:    76 KIDTSIK--------KPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQ 127

Query:   298 ITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357
                L  G  +V+GTPGRL+D +      L E+   VLDEAD ML+MGF E +++IL  I 
Sbjct:   128 FQQLERGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIP 187

Query:   358 LARQMVMFSATWPIEVHKLAEEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQR 416
                QM +FSAT P  + K+A  ++ DP  +KV    +  A        V  +   +  +R
Sbjct:   188 KTAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALER 247

Query:   417 LLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFK 476
             +  ++E Y     + +++F   + +   +   L R+G+  +A++G   Q +R + +   K
Sbjct:   248 IAEVVE-Y-----DAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMK 301

Query:   477 EGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTF 532
              G   ++VATDV ARGLDIP + +VINY  P   E YVHRIGRTGRAG++G+S  F
Sbjct:   302 SGKSSILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAF 357


>POMBASE|SPAC823.08c [details] [associations]
            symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
            GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
            OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
            SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
            KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
        Length = 465

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 137/365 (37%), Positives = 205/365 (56%)

Query:   177 KALKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
             +A K+F E  + D++   C+   FK P+PIQ  A P +LN RD IG+A+TGSGKT AF +
Sbjct:    43 EAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFAL 102

Query:   235 PAMMHVLSNRKGKAVGKRVNPL-CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTS 293
             P +  + +N          +P   +VL+PTRELA QI +     G   GV+SV + GG  
Sbjct:   103 PVIQELWNNP---------SPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMD 153

Query:   294 KQPQITALRSGVDIVIGTPGRLIDLIEMNV-CHLSEVSFVVLDEADRMLDMGFEEPVRFI 352
                Q  AL     +++ TPGRL+D +E      L  + ++++DEADR+LDM F   +  I
Sbjct:   154 MVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKI 213

Query:   353 LSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRS 412
             L  I   R+ ++FSAT   +V KL    +   PV+V V S+  +    ++Q       + 
Sbjct:   214 LKIIPHERRTLLFSATMTSKVEKLQRASLH-QPVRVAVSSK-FSTVDTLIQRYLFFPFKH 271

Query:   413 RDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSL 472
             +D  L+ L+ +      N +++FA    +  RL  +LR  G+  + +HG+ +Q  R  +L
Sbjct:   272 KDTYLVYLVNEL---AGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGAL 328

Query:   473 SLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTF 532
             + FK G    +VATDVAARGLDIP V+VVINY  P  ++ Y+HR+GRT RAG+ G S   
Sbjct:   329 NKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIAL 388

Query:   533 FTNHN 537
              T ++
Sbjct:   389 VTQYD 393


>UNIPROTKB|Q8EJQ5 [details] [associations]
            symbol:rhlB "ATP-dependent RNA helicase RhlB"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
            RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
            KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
        Length = 439

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 135/338 (39%), Positives = 200/338 (59%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN-PL 256
             F+  +PIQ+ + P LL  +D  G A+TG+GKT+AF V    H+LS+   +  G+++N P 
Sbjct:    29 FEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSSSIPE--GRQLNQPR 86

Query:   257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
              ++++PTRELA QI        K   +K   VYGG S   Q   L  GVDI+IGT GR+I
Sbjct:    87 AIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRII 146

Query:   317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMV--MFSATWPIEVH 374
             D +   + +L+ +  VVLDEADRM D+GF + +RF+  ++  A Q +  +FSAT  ++V 
Sbjct:   147 DYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNMLFSATLSMKVQ 206

Query:   375 KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLV 434
             +LA ++M+ +PVKV +  E+  + +    I E +   S++ ++  LL    +    + +V
Sbjct:   207 ELAYDHMN-DPVKVEIAPEEKTSKN----IKEEIFYPSQEDKMRLLLTLIEEDWPEKAIV 261

Query:   435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494
             F+  +   + L + L   G +V  + G   Q +R + L  F +G   ++VATDVAARGL 
Sbjct:   262 FSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLH 321

Query:   495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTF 532
             I DV  V NY  P   EDYVHRIGRTGRAG KGVS +F
Sbjct:   322 ISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSF 359


>UNIPROTKB|Q9KKW0 [details] [associations]
            symbol:VCA0990 "ATP-dependent RNA helicase, DEAD box
            family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
            N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
            EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
            ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
            KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
        Length = 428

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 135/350 (38%), Positives = 205/350 (58%)

Query:   181 SFTESKLPDDVLGCC-KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMH 239
             SF+   L  D++    K    PS IQ+   P +L G+D   +A TGSGKT+A+G+P +  
Sbjct:    24 SFSSLALSADLIQALPKAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLER 83

Query:   240 VLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQIT 299
             + ++ + +A         LVL PTRELA Q+ +VL   G   G+ ++C+ GG  K  Q  
Sbjct:    84 LKTSPEQQA---------LVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQN 134

Query:   300 ALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA 359
             AL    +I++ T GRL DL +  +  L+ V+ +VLDEADR+LDMGF   V+ + S+ +  
Sbjct:   135 ALAENPNILVATTGRLFDLTQSGL-RLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGV 193

Query:   360 RQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLA 419
             RQ VM SAT+  ++   A++ M   P +V    E+ + N  V + + +++  S+ Q L+A
Sbjct:   194 RQTVMCSATFSDDLKLKAQQLMRA-PTQVSANPEN-SINQAVQETLYLVNKGSKTQALVA 251

Query:   420 LLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT 479
             LL K H  Q  +VLVF   +  AD L   L ++G     +HG K+Q ER  +L+ FK GT
Sbjct:   252 LL-KQH--QWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGT 308

Query:   480 CPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS 529
               +++ATD+ ARG+ I  + VVIN+  P+  E YVHR+GRT RAG+ G++
Sbjct:   309 TQVLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIA 358


>TIGR_CMR|SO_0407 [details] [associations]
            symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
            RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
            KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
        Length = 439

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 135/338 (39%), Positives = 200/338 (59%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN-PL 256
             F+  +PIQ+ + P LL  +D  G A+TG+GKT+AF V    H+LS+   +  G+++N P 
Sbjct:    29 FEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSSSIPE--GRQLNQPR 86

Query:   257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
              ++++PTRELA QI        K   +K   VYGG S   Q   L  GVDI+IGT GR+I
Sbjct:    87 AIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRII 146

Query:   317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMV--MFSATWPIEVH 374
             D +   + +L+ +  VVLDEADRM D+GF + +RF+  ++  A Q +  +FSAT  ++V 
Sbjct:   147 DYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNMLFSATLSMKVQ 206

Query:   375 KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLV 434
             +LA ++M+ +PVKV +  E+  + +    I E +   S++ ++  LL    +    + +V
Sbjct:   207 ELAYDHMN-DPVKVEIAPEEKTSKN----IKEEIFYPSQEDKMRLLLTLIEEDWPEKAIV 261

Query:   435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494
             F+  +   + L + L   G +V  + G   Q +R + L  F +G   ++VATDVAARGL 
Sbjct:   262 FSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLH 321

Query:   495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTF 532
             I DV  V NY  P   EDYVHRIGRTGRAG KGVS +F
Sbjct:   322 ISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSF 359


>TIGR_CMR|VC_A0990 [details] [associations]
            symbol:VC_A0990 "ATP-dependent RNA helicase, DEAD box
            family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
            EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
            ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
            KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
        Length = 428

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 135/350 (38%), Positives = 205/350 (58%)

Query:   181 SFTESKLPDDVLGCC-KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMH 239
             SF+   L  D++    K    PS IQ+   P +L G+D   +A TGSGKT+A+G+P +  
Sbjct:    24 SFSSLALSADLIQALPKAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLER 83

Query:   240 VLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQIT 299
             + ++ + +A         LVL PTRELA Q+ +VL   G   G+ ++C+ GG  K  Q  
Sbjct:    84 LKTSPEQQA---------LVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQN 134

Query:   300 ALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA 359
             AL    +I++ T GRL DL +  +  L+ V+ +VLDEADR+LDMGF   V+ + S+ +  
Sbjct:   135 ALAENPNILVATTGRLFDLTQSGL-RLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGV 193

Query:   360 RQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLA 419
             RQ VM SAT+  ++   A++ M   P +V    E+ + N  V + + +++  S+ Q L+A
Sbjct:   194 RQTVMCSATFSDDLKLKAQQLMRA-PTQVSANPEN-SINQAVQETLYLVNKGSKTQALVA 251

Query:   420 LLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT 479
             LL K H  Q  +VLVF   +  AD L   L ++G     +HG K+Q ER  +L+ FK GT
Sbjct:   252 LL-KQH--QWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGT 308

Query:   480 CPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS 529
               +++ATD+ ARG+ I  + VVIN+  P+  E YVHR+GRT RAG+ G++
Sbjct:   309 TQVLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIA 358


>WB|WBGene00001599 [details] [associations]
            symbol:glh-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
            "post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
            development" evidence=IMP] [GO:0016070 "RNA metabolic process"
            evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
            "RNA helicase activity" evidence=IDA] [GO:0008432 "JUN kinase
            binding" evidence=IPI] [GO:0043621 "protein self-association"
            evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
            GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
            GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
            EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
            ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
            PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
            KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
            HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
            Uniprot:Q966L9
        Length = 974

 Score = 563 (203.2 bits), Expect = 1.0e-53, P = 1.0e-53
 Identities = 145/419 (34%), Positives = 219/419 (52%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLL 213
             F +  D +V +T  D K    K  K+F+E+ L + +     +  +   +PIQ +  P + 
Sbjct:   529 FNKFFDAEVKITS-DKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIH 587

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKR-VNPLCLVLSPTRELADQIYD 272
              G D +  A+TGSGKT AF +P M  ++        G+    P C++L+PTREL DQIY+
Sbjct:   588 QGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYN 647

Query:   273 VLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFV 332
                       ++   VYGG +       +  G  I++GT GR+    E     L +  F 
Sbjct:   648 EGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFF 707

Query:   333 VLDEADRMLD-MGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPNPVK 387
             VLDEADRM+D MGF   +  I++  S+     RQ +MFSAT+P  V + A  ++    + 
Sbjct:   708 VLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIM 767

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALL---------EKYHKSQRNRVLVFALY 438
             + +     AAN  V+Q  E  D   +  +LL +L         EK  +    + +VF   
Sbjct:   768 LAIDKIG-AANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQ 826

Query:   439 QLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDV 498
             +  AD L ++L  +    + IHG + Q ER+++L  F+ G+ P+++AT VA RGLDI  V
Sbjct:   827 RAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGV 886

Query:   499 EVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPD 557
             + VINY  P   +DY+HRIGRTGR G  G + T F + +  L  ELV VL +A Q+VP+
Sbjct:   887 DHVINYDMPDNIDDYIHRIGRTGRVGNAGRA-TSFISEDCNLLSELVRVLSDADQLVPE 944


>UNIPROTKB|Q966L9 [details] [associations]
            symbol:glh-2 "ATP-dependent RNA helicase glh-2"
            species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
            GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
            GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
            EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
            ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
            PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
            KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
            HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
            Uniprot:Q966L9
        Length = 974

 Score = 563 (203.2 bits), Expect = 1.0e-53, P = 1.0e-53
 Identities = 145/419 (34%), Positives = 219/419 (52%)

Query:   156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLL 213
             F +  D +V +T  D K    K  K+F+E+ L + +     +  +   +PIQ +  P + 
Sbjct:   529 FNKFFDAEVKITS-DKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIH 587

Query:   214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKR-VNPLCLVLSPTRELADQIYD 272
              G D +  A+TGSGKT AF +P M  ++        G+    P C++L+PTREL DQIY+
Sbjct:   588 QGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYN 647

Query:   273 VLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFV 332
                       ++   VYGG +       +  G  I++GT GR+    E     L +  F 
Sbjct:   648 EGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFF 707

Query:   333 VLDEADRMLD-MGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYMDPNPVK 387
             VLDEADRM+D MGF   +  I++  S+     RQ +MFSAT+P  V + A  ++    + 
Sbjct:   708 VLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIM 767

Query:   388 VVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALL---------EKYHKSQRNRVLVFALY 438
             + +     AAN  V+Q  E  D   +  +LL +L         EK  +    + +VF   
Sbjct:   768 LAIDKIG-AANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQ 826

Query:   439 QLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDV 498
             +  AD L ++L  +    + IHG + Q ER+++L  F+ G+ P+++AT VA RGLDI  V
Sbjct:   827 RAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGV 886

Query:   499 EVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPD 557
             + VINY  P   +DY+HRIGRTGR G  G + T F + +  L  ELV VL +A Q+VP+
Sbjct:   887 DHVINYDMPDNIDDYIHRIGRTGRVGNAGRA-TSFISEDCNLLSELVRVLSDADQLVPE 944


>UNIPROTKB|O05855 [details] [associations]
            symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
            species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
            wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
            GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
            EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
            RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
            EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
            GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
            KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
            TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
            Uniprot:O05855
        Length = 527

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 143/374 (38%), Positives = 204/374 (54%)

Query:   175 KYKALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAF 232
             K+    +F +  + D+++     +  K P  IQ    P  L+G D IG A+TG GKT AF
Sbjct:     5 KHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAF 64

Query:   233 GVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK-----P-----CG 282
             GVP +  + S    + +     P  LV+ PTREL  Q+ D L  AGK     P       
Sbjct:    65 GVPLLQRITSGDGTRPLTGA--PRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAA 122

Query:   283 VKS----VCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEAD 338
             V+     V +YGG   +PQI ALR+G D+V+GTPGRL+DL +     L  +S +VLDEAD
Sbjct:   123 VRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEAD 182

Query:   339 RMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAAN 398
              MLD+GF   +  IL +I   RQ ++FSAT P  +  LA  +M   P  +   +   +A 
Sbjct:   183 EMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFM-VRPTHIRAEAPHSSAV 241

Query:   399 HDVMQIVEVLDDRSRDQRLLALLEKYHKSQ-RNRVLVFALYQLEADRLENMLRRSGWKVV 457
             HD  +   V    + D+  + L+ +  +++ R   ++F   +  A ++ + L   G+ V 
Sbjct:   242 HDATEQF-VYRAHALDK--VELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVG 298

Query:   458 AIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRI 517
             A+HG   Q  R K+L  F+ G   ++VATDVAARG+DI DV  VINY  P   + YVHRI
Sbjct:   299 AVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRI 358

Query:   518 GRTGRAGKKGVSHT 531
             GRTGRAG+ GV+ T
Sbjct:   359 GRTGRAGRTGVAVT 372


>UNIPROTKB|Q485I3 [details] [associations]
            symbol:dbpA "ATP-dependent RNA helicase DbpA"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
            ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
            KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
            BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
        Length = 468

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 142/383 (37%), Positives = 217/383 (56%)

Query:   181 SFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMM 238
             +F+   L  D++    +  ++  +PIQ+   P LL G+D IG AKTGSGKT AFG+ A++
Sbjct:    11 AFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGL-ALL 69

Query:   239 HVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQ 297
             + L  +K      R+  +  V+ PTRELADQ+   L    +    +K + + GGT   PQ
Sbjct:    70 NKLEVKKF-----RIQSM--VICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQ 122

Query:   298 ITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357
             I +L  G  +++GTPGRL + +      L  ++ +VLDEADRML+MGF+  +  I+ +  
Sbjct:   123 IGSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTP 182

Query:   358 LARQMVMFSATWPIEVHKLAEEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQR 416
             L RQ ++FSAT+P ++  ++E  M DP  VK+   SED +        V   DDR    R
Sbjct:   183 LDRQTLLFSATFPDQIKSISESIMTDPVMVKIA-SSEDQSTISQKFFKVGNDDDRLDALR 241

Query:   417 LLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFK 476
             LL L      +Q     +F   + E  ++ + L   G+ V+A+HG   Q +R ++L  F 
Sbjct:   242 LLLL-----GNQVESTAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFA 296

Query:   477 EGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNH 536
               +  ++VATDVAARGLDI  +++VINY     +E +VHRIGRTGRAG  G++++ F++ 
Sbjct:   297 NKSASILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDK 356

Query:   537 NKALAGELVNVLREARQVVPDAL 559
                  G L + L EA  + P+ L
Sbjct:   357 ESYKVGLLEDYL-EA-VITPEPL 377


>TIGR_CMR|CPS_1540 [details] [associations]
            symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
            activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
            ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
            KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
            BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
        Length = 468

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 142/383 (37%), Positives = 217/383 (56%)

Query:   181 SFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMM 238
             +F+   L  D++    +  ++  +PIQ+   P LL G+D IG AKTGSGKT AFG+ A++
Sbjct:    11 AFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGL-ALL 69

Query:   239 HVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQ 297
             + L  +K      R+  +  V+ PTRELADQ+   L    +    +K + + GGT   PQ
Sbjct:    70 NKLEVKKF-----RIQSM--VICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQ 122

Query:   298 ITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357
             I +L  G  +++GTPGRL + +      L  ++ +VLDEADRML+MGF+  +  I+ +  
Sbjct:   123 IGSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTP 182

Query:   358 LARQMVMFSATWPIEVHKLAEEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQR 416
             L RQ ++FSAT+P ++  ++E  M DP  VK+   SED +        V   DDR    R
Sbjct:   183 LDRQTLLFSATFPDQIKSISESIMTDPVMVKIA-SSEDQSTISQKFFKVGNDDDRLDALR 241

Query:   417 LLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFK 476
             LL L      +Q     +F   + E  ++ + L   G+ V+A+HG   Q +R ++L  F 
Sbjct:   242 LLLL-----GNQVESTAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFA 296

Query:   477 EGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNH 536
               +  ++VATDVAARGLDI  +++VINY     +E +VHRIGRTGRAG  G++++ F++ 
Sbjct:   297 NKSASILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDK 356

Query:   537 NKALAGELVNVLREARQVVPDAL 559
                  G L + L EA  + P+ L
Sbjct:   357 ESYKVGLLEDYL-EA-VITPEPL 377


>ASPGD|ASPL0000013201 [details] [associations]
            symbol:AN4233 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
            RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
            STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
            KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
        Length = 465

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 134/361 (37%), Positives = 196/361 (54%)

Query:   180 KSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAM 237
             KSF E  + D +   C+N  +K P+PIQS A P  L GRD IG+A+TGSGKT AF +P M
Sbjct:    46 KSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALP-M 104

Query:   238 MHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQ 297
             +  L        G       LVL+PTRELA QI       G   GV+   + GG     Q
Sbjct:   105 LQALMEAPQTLFG-------LVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQ 157

Query:   298 ITALRSGVDIVIGTPGRLIDLIEMNV-CHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356
               AL     I++ TPGRL+D +E      L  + ++ +DEADR+LDM F E +  I+  +
Sbjct:   158 SIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRIL 217

Query:   357 SLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQR 416
                R   +FSAT   +V  L    +  NPV+V V S+    +  +      +  + ++  
Sbjct:   218 PRTRHTYLFSATMSTKVESLQRASLS-NPVRVSVSSKYQTVS-TLQSSYICIPHKHKNLY 275

Query:   417 LLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFK 476
             L+ LL ++        ++F     E  R+  MLR  G+  + +HG+ +Q  R  +L  F+
Sbjct:   276 LVYLLNEFAGQS---AIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFR 332

Query:   477 EGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNH 536
               +  ++VATDVAARGLDIP V+VV N+  P+ ++ Y+HR+GRT RAGK GV+ +F T +
Sbjct:   333 SRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQY 392

Query:   537 N 537
             +
Sbjct:   393 D 393


>UNIPROTKB|E1C187 [details] [associations]
            symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
            IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
            Uniprot:E1C187
        Length = 759

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 149/412 (36%), Positives = 220/412 (53%)

Query:   174 AKYKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGS-GKTI 230
             ++Y    SF +  L   +L       FK P+PIQ    P  L G+D    A TG+ GKT 
Sbjct:   174 SEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTVGKTA 233

Query:   231 AFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYG 290
             AF +P +  ++   +   +  RV    LVL PTREL  Q++ V     +   V +    G
Sbjct:   234 AFILPVLERLIYKPRQAPI-TRV----LVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVG 288

Query:   291 GTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC---HLSEVSFVVLDEADRMLDMGFEE 347
             G   + Q  ALRSG DI+I TPGRLID   ++ C   HLS V  ++LDEADRMLD  FEE
Sbjct:   289 GLDVKTQEAALRSGPDILIATPGRLID--HLHNCPSFHLSSVEVLILDEADRMLDEYFEE 346

Query:   348 PVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEV 407
              ++ I+   S  RQ ++FSAT   EV  LA   +  NP ++ V S    A     + + +
Sbjct:   347 QMKEIIRLCSRHRQTMLFSATMTEEVKDLASVSLK-NPTRIFVNSNTDVAPFLRQEFIRI 405

Query:   408 LDDRSRDQRLL--ALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQ 465
               +R  D+  +  ALL +      + V++F   + +A R+  +L   G +V  +HG  +Q
Sbjct:   406 RPNREGDREAIVSALLTRTFP---DHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQ 462

Query:   466 HERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGK 525
              +R ++L  FK+    ++VATDVAARGLDI  V+ VIN++ P TT+ YVHR+GRT RAG+
Sbjct:   463 AQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGR 522

Query:   526 KGVSHTFFTNHNKALAGELVNVLR---EARQVVPDALLKFGTHVKKKESKLY 574
              G S +      + +  E+V   +   +AR +  D +LKF   ++  E  +Y
Sbjct:   523 AGRSVSLVGEEERKMLKEIVKAAKTPVKARILPQDVILKFREKIENLEKDVY 574


>UNIPROTKB|Q8EBV7 [details] [associations]
            symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
            KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
            Uniprot:Q8EBV7
        Length = 409

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 123/352 (34%), Positives = 198/352 (56%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             ++ P+PIQ  A P +L  +D +  A+TG+GKT AF +P +  ++++ +     K +  L 
Sbjct:    21 YQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAIRALV 80

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             LV  PTRELA Q+        K   ++    YGG S + Q     +G+D++I TPGRL+D
Sbjct:    81 LV--PTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRLLD 138

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              +     +L++++ +V DEADRMLDMGF + ++ +L ++   RQ ++FSAT    +   +
Sbjct:   139 HLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSATLDDSIFSFS 198

Query:   378 EEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFA 436
             +  + DP  ++V   +   A    + Q V  +D   + + +  L+   +  Q   VL+F+
Sbjct:   199 KNLLRDPKRIEVAKPNTTAA---QIEQRVYAIDSDRKTEFVSHLVRSKNWQQ---VLIFS 252

Query:   437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496
               +   D+L   L + G    + HG  +Q  R K L  FK+G   ++VATDVAARGLDI 
Sbjct:   253 RTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIA 312

Query:   497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVL 548
             +++ VIN+  P   EDY+HRIGRTGRAG  G++ T F+  +  L  E+  +L
Sbjct:   313 ELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLL 364


>UNIPROTKB|Q9KV52 [details] [associations]
            symbol:rhlB "ATP-dependent RNA helicase RhlB"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
            KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
            ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
            KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
        Length = 438

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 135/341 (39%), Positives = 194/341 (56%)

Query:   196 KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSN--RKGKAVGKRV 253
             K F   +PIQ+ A P LL+G+D  G A+TG+GKT+AF      H+L+    +G+A     
Sbjct:    27 KGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAAEGRA---ET 83

Query:   254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPG 313
              P  ++++PTRELA QI++         G+K+   YGG S   Q+  L+SGVDI+IGT G
Sbjct:    84 QPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTG 143

Query:   314 RLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMV--MFSATWPI 371
             R+ID  +  V +L+ +  VVLDEADRM D+GF + +RF+  ++   +  +  +FSAT   
Sbjct:   144 RIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLSY 203

Query:   372 EVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNR 431
              V +LA E+M+ NP  VVV  E     H   +I E L   S + ++  L     +   +R
Sbjct:   204 RVQELAFEHMN-NPEHVVVEPEQ-KTGH---RIQEELFYPSNEHKMALLQTLIEEEWPDR 258

Query:   432 VLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAAR 491
              ++FA  +   +++   L     +V  + G   Q +R + L  F +G   ++VATDVAAR
Sbjct:   259 AIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVAAR 318

Query:   492 GLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTF 532
             GL IP V  V NY  P   EDYVHRIGRTGRAG  G S +F
Sbjct:   319 GLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISF 359


>TIGR_CMR|SO_3388 [details] [associations]
            symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
            KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
            Uniprot:Q8EBV7
        Length = 409

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 123/352 (34%), Positives = 198/352 (56%)

Query:   198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
             ++ P+PIQ  A P +L  +D +  A+TG+GKT AF +P +  ++++ +     K +  L 
Sbjct:    21 YQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAIRALV 80

Query:   258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
             LV  PTRELA Q+        K   ++    YGG S + Q     +G+D++I TPGRL+D
Sbjct:    81 LV--PTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRLLD 138

Query:   318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
              +     +L++++ +V DEADRMLDMGF + ++ +L ++   RQ ++FSAT    +   +
Sbjct:   139 HLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSATLDDSIFSFS 198

Query:   378 EEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFA 436
             +  + DP  ++V   +   A    + Q V  +D   + + +  L+   +  Q   VL+F+
Sbjct:   199 KNLLRDPKRIEVAKPNTTAA---QIEQRVYAIDSDRKTEFVSHLVRSKNWQQ---VLIFS 252

Query:   437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496
               +   D+L   L + G    + HG  +Q  R K L  FK+G   ++VATDVAARGLDI 
Sbjct:   253 RTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIA 312

Query:   497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVL 548
             +++ VIN+  P   EDY+HRIGRTGRAG  G++ T F+  +  L  E+  +L
Sbjct:   313 ELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLL 364


>TIGR_CMR|VC_0305 [details] [associations]
            symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
            "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
            KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
            ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
            KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
        Length = 438

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 135/341 (39%), Positives = 194/341 (56%)

Query:   196 KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSN--RKGKAVGKRV 253
             K F   +PIQ+ A P LL+G+D  G A+TG+GKT+AF      H+L+    +G+A     
Sbjct:    27 KGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAAEGRA---ET 83

Query:   254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPG 313
              P  ++++PTRELA QI++         G+K+   YGG S   Q+  L+SGVDI+IGT G
Sbjct:    84 QPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTG 143

Query:   314 RLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMV--MFSATWPI 371
             R+ID  +  V +L+ +  VVLDEADRM D+GF + +RF+  ++   +  +  +FSAT   
Sbjct:   144 RIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLSY 203

Query:   372 EVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNR 431
              V +LA E+M+ NP  VVV  E     H   +I E L   S + ++  L     +   +R
Sbjct:   204 RVQELAFEHMN-NPEHVVVEPEQ-KTGH---RIQEELFYPSNEHKMALLQTLIEEEWPDR 258

Query:   432 VLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAAR 491
              ++FA  +   +++   L     +V  + G   Q +R + L  F +G   ++VATDVAAR
Sbjct:   259 AIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVAAR 318

Query:   492 GLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTF 532
             GL IP V  V NY  P   EDYVHRIGRTGRAG  G S +F
Sbjct:   319 GLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISF 359

WARNING:  HSPs involving 711 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      600       498   0.00084  119 3  11 22  0.41    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  961
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  267 KB (2142 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  40.81u 0.09s 40.90t   Elapsed:  00:00:02
  Total cpu time:  40.87u 0.09s 40.96t   Elapsed:  00:00:02
  Start:  Fri May 10 23:08:29 2013   End:  Fri May 10 23:08:31 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with STRS1 STRS1 STRS1 STRESS RESPONSE SUPPRESSOR 1	protein from Arabidopsis thaliana	3.5e-191
BLAST match view associations BLAST with DBP3 DBP3 DBP3	gene_product from Candida albicans	6.5e-106
BLAST match view associations BLAST with DBP3 DBP3 DBP3 RNA-Dependent ATPase, member of DExD/H-box family	gene from Saccharomyces cerevisiae	6.5e-106
BLAST match view associations BLAST with AT5G63120 AT5G63120 AT5G63120	protein from Arabidopsis thaliana	4.7e-96
BLAST match view associations BLAST with RH20 RH20 RH20 RNA helicase 20	protein from Arabidopsis thaliana	1.0e-91
BLAST match view associations BLAST with ddx17 ddx17 ddx17 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.1e-91
BLAST match view associations BLAST with DBP2 DBP2 DBP2	gene_product from Candida albicans	5.7e-91
BLAST match view associations BLAST with si:dkey-156n14.5 si:dkey-156n14.5 si:dkey-156n14.5	gene_product from Danio rerio	1.9e-90
BLAST match view associations BLAST with ddx5 ddx5 ddx5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	gene_product from Danio rerio	1.1e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Uncharacterized protein	protein from Bos taurus	1.4e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Uncharacterized protein	protein from Canis lupus familiaris	1.4e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Probable ATP-dependent RNA helicase DDX5	protein from Homo sapiens	1.4e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Probable ATP-dependent RNA helicase DDX5	protein from Homo sapiens	1.4e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Probable ATP-dependent RNA helicase DDX5	protein from Pongo abelii	1.4e-89
BLAST match view associations BLAST with Ddx5 Ddx5 Ddx5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein from Mus musculus	1.4e-89
BLAST match view associations BLAST with Ddx5 Ddx5 Ddx5 DEAD (Asp-Glu-Ala-Asp) box helicase 5	gene from Rattus norvegicus	1.4e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Probable ATP-dependent RNA helicase DDX5	protein from Macaca fascicularis	1.7e-89
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Gallus gallus	2.2e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Uncharacterized protein	protein from Gallus gallus	2.8e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Uncharacterized protein	protein from Gallus gallus	2.8e-89
BLAST match view associations BLAST with DBP2 DBP2 DBP2 ATP-dependent RNA helicase of the DEAD-box protein family	gene from Saccharomyces cerevisiae	4.6e-89
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Probable ATP-dependent RNA helicase DDX5	protein from Pan troglodytes	7.5e-89
BLAST match view associations BLAST with DDX17 DDX17 DDX17 DDX17 protein	protein from Bos taurus	1.2e-88
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-88
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-88
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Probable ATP-dependent RNA helicase DDX17	protein from Homo sapiens	1.2e-88
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Probable ATP-dependent RNA helicase DDX17	protein from Homo sapiens	1.2e-88
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Sus scrofa	1.2e-88
BLAST match view associations BLAST with Ddx17 Ddx17 Ddx17 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein from Mus musculus	1.2e-88
BLAST match view associations BLAST with F58E10.3 F58E10.3 F58E10.3	gene from Caenorhabditis elegans	3.2e-88
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Probable ATP-dependent RNA helicase DDX17	protein from Homo sapiens	1.8e-87
BLAST match view associations BLAST with DBP2 DBP2 DBP2 ATP-dependent RNA helicase DBP2	protein from Magnaporthe oryzae 70-15	9.9e-87
BLAST match view associations BLAST with CG10077 CG10077 CG10077	protein from Drosophila melanogaster	8.9e-86
BLAST match view associations BLAST with CG10777 CG10777 CG10777	protein from Drosophila melanogaster	3.4e-84
BLAST match view associations BLAST with CG7878 CG7878 CG7878	protein from Drosophila melanogaster	5.0e-83
BLAST match view associations BLAST with Rm62 Rm62 Rm62	protein from Drosophila melanogaster	2.2e-82
BLAST match view associations BLAST with AT5G14610 AT5G14610 AT5G14610	protein from Arabidopsis thaliana	1.5e-81
BLAST match view associations BLAST with PF14_0437 PF14_0437 PF14_0437 helicase, truncated, putative	gene from Plasmodium falciparum	1.5e-81
BLAST match view associations BLAST with PF14_0437 PF14_0437 PF14_0437 Helicase, putative	protein from Plasmodium falciparum 3D7	1.5e-81
BLAST match view associations BLAST with AT3G06480 AT3G06480 AT3G06480	protein from Arabidopsis thaliana	3.3e-79
BLAST match view associations BLAST with DDX46 DDX46 DDX46 Uncharacterized protein	protein from Gallus gallus	1.1e-78
BLAST match view associations BLAST with DRH1 DRH1 DRH1 DEAD box RNA helicase 1	protein from Arabidopsis thaliana	2.3e-78
BLAST match view associations BLAST with DDX46 DDX46 DDX46 Uncharacterized protein	protein from Bos taurus	7.5e-78
BLAST match view associations BLAST with DDX46 DDX46 DDX46 Uncharacterized protein	protein from Canis lupus familiaris	7.5e-78
BLAST match view associations BLAST with DDX46 DDX46 DDX46 Probable ATP-dependent RNA helicase DDX46	protein from Homo sapiens	7.5e-78
BLAST match view associations BLAST with DDX46 DDX46 DDX46 Uncharacterized protein	protein from Sus scrofa	7.5e-78
BLAST match view associations BLAST with Ddx46 Ddx46 Ddx46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein from Mus musculus	7.5e-78
BLAST match view associations BLAST with Ddx46 Ddx46 Ddx46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	gene from Rattus norvegicus	7.5e-78
BLAST match view associations BLAST with ddx46 ddx46 ddx46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	gene_product from Danio rerio	8.5e-77
BLAST match view associations BLAST with DDB_G0281925 DDB_G0281925 DDB_G0281925 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	1.5e-76
BLAST match view associations BLAST with DDX5 DDX5 DDX5 Probable ATP-dependent RNA helicase DDX5	protein from Homo sapiens	1.5e-76
BLAST match view associations BLAST with RCF1 RCF1 RCF1 regulator of CBF gene expression 1	protein from Arabidopsis thaliana	2.5e-75
BLAST match view associations BLAST with PFL1310c PFL1310c PFL1310c ATP-dependent RNA helicase, putative	gene from Plasmodium falciparum	3.2e-75
BLAST match view associations BLAST with DDX43 DDX43 DDX43 Probable ATP-dependent RNA helicase DDX43	protein from Homo sapiens	3.5e-75
BLAST match view associations BLAST with ddx43 ddx43 ddx43 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	gene_product from Danio rerio	5.7e-75
BLAST match view associations BLAST with LOC100524536 LOC100524536 LOC100524536 Uncharacterized protein	protein from Sus scrofa	4.0e-74
BLAST match view associations BLAST with I3LHW0 I3LHW0 I3LHW0 Uncharacterized protein	protein from Sus scrofa	4.0e-74
BLAST match view associations BLAST with helB1 helB1 helB1 putative RNA splicing factor	gene from Dictyostelium discoideum	1.3e-73
BLAST match view associations BLAST with DDX43 DDX43 DDX43 Uncharacterized protein	protein from Bos taurus	1.7e-73
BLAST match view associations BLAST with DDX43 DDX43 DDX43 Uncharacterized protein	protein from Sus scrofa	1.7e-73
BLAST match view associations BLAST with PRP5 PRP5 PRP5 Pre-mRNA-processing ATP-dependent RNA helicase PRP5	protein from Magnaporthe oryzae 70-15	1.7e-73
BLAST match view associations BLAST with E9PT29 E9PT29 E9PT29 Uncharacterized protein	protein from Rattus norvegicus	5.9e-73
BLAST match view associations BLAST with Y54G11A.3 Y54G11A.3 Y54G11A.3	gene from Caenorhabditis elegans	5.9e-73
BLAST match view associations BLAST with DDX43 DDX43 DDX43 Uncharacterized protein	protein from Gallus gallus	1.6e-72
BLAST match view associations BLAST with AT2G47330 AT2G47330 AT2G47330	protein from Arabidopsis thaliana	1.6e-72
BLAST match view associations BLAST with AT2G42520 AT2G42520 AT2G42520	protein from Arabidopsis thaliana	2.0e-72
BLAST match view associations BLAST with AT3G58570 AT3G58570 AT3G58570	protein from Arabidopsis thaliana	2.5e-72
BLAST match view associations BLAST with DDX43 DDX43 DDX43 Uncharacterized protein	protein from Gallus gallus	3.2e-72
BLAST match view associations BLAST with DDX42 DDX42 DDX42 Uncharacterized protein	protein from Bos taurus	4.7e-72
BLAST match view associations BLAST with F53H1.1 F53H1.1 F53H1.1	gene from Caenorhabditis elegans	4.7e-72
BLAST match view associations BLAST with LOC100300937 LOC100300937 LOC100300937 Uncharacterized protein	protein from Bos taurus	2.9e-71
BLAST match view associations BLAST with DDX42 DDX42 DDX42 Uncharacterized protein	protein from Canis lupus familiaris	4.2e-71
BLAST match view associations BLAST with DDX42 DDX42 DDX42 ATP-dependent RNA helicase DDX42	protein from Homo sapiens	4.2e-71
BLAST match view associations BLAST with DDX42 DDX42 DDX42 Uncharacterized protein	protein from Sus scrofa	4.2e-71
BLAST match view associations BLAST with CG6418 CG6418 CG6418	protein from Drosophila melanogaster	7.7e-71
BLAST match view associations BLAST with DDX42 DDX42 DDX42 ATP-dependent RNA helicase DDX42	protein from Pongo abelii	8.6e-71
BLAST match view associations BLAST with Ddx42 Ddx42 Ddx42 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein from Mus musculus	1.4e-70
BLAST match view associations BLAST with Ddx42 Ddx42 Ddx42 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	gene from Rattus norvegicus	1.8e-70
BLAST match view associations BLAST with AT3G58510 AT3G58510 AT3G58510	protein from Arabidopsis thaliana	2.1e-70
BLAST match view associations BLAST with DDX42 DDX42 DDX42 ATP-dependent RNA helicase DDX42	protein from Gallus gallus	9.8e-70
BLAST match view associations BLAST with DDX42 DDX42 DDX42 ATP-dependent RNA helicase DDX42	protein from Gallus gallus	9.8e-70
BLAST match view associations BLAST with DDX42 DDX42 DDX42 ATP-dependent RNA helicase DDX42	protein from Gallus gallus	9.8e-70
BLAST match view associations BLAST with ddx42 ddx42 ddx42 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	gene_product from Danio rerio	2.7e-68
BLAST match view associations BLAST with CG6227 CG6227 CG6227	protein from Drosophila melanogaster	1.4e-67
BLAST match view associations BLAST with vbh-1 vbh-1 vbh-1	gene from Caenorhabditis elegans	6.5e-67
BLAST match view associations BLAST with AT3G09620 AT3G09620 AT3G09620	protein from Arabidopsis thaliana	1.4e-66
BLAST match view associations BLAST with ddx-23 ddx-23 ddx-23	gene from Caenorhabditis elegans	2.4e-66
BLAST match view associations BLAST with Ddx41 Ddx41 Ddx41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	gene from Rattus norvegicus	5.8e-66
BLAST match view associations BLAST with PFE0925c PFE0925c PFE0925c snrnp protein, putative	gene from Plasmodium falciparum	1.2e-65
BLAST match view associations BLAST with PFE0925c PFE0925c PFE0925c Snrnp protein, putative	protein from Plasmodium falciparum 3D7	1.2e-65
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Escherichia coli K-12	1.2e-65