BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039378
(600 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 261 bits (666), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/399 (38%), Positives = 231/399 (57%), Gaps = 24/399 (6%)
Query: 179 LKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPA 236
++SF++ ++ + ++G + + P+P+Q HA P + RD + A+TGSGKT AF +P
Sbjct: 14 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 73
Query: 237 MMHVLSNRKGKAV---------GKRVN-PLCLVLSPTRELADQIYDVLNDAGKPCGVKSV 286
+ + S+ G+A+ G+R P+ LVL+PTRELA QIY+ V+
Sbjct: 74 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 133
Query: 287 CVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFE 346
VYGG QI L G +++ TPGRL+D++E L ++VLDEADRMLDMGFE
Sbjct: 134 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 193
Query: 347 EPVRFILSKISL----ARQMVMFSATWPIEVHKLAEEYMDPNPVKVV--VGSEDLAANHD 400
+R I+ + ++ R +MFSAT+P E+ LA +++D V VGS + +
Sbjct: 194 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGS----TSEN 249
Query: 401 VMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIH 460
+ Q V +++ + LL LL K + LVF + AD LE+ L G+ +IH
Sbjct: 250 ITQKVVWVEESDKRSFLLDLLNATGKD--SLTLVFVETKKGADSLEDFLYHEGYACTSIH 307
Query: 461 GKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 520
G ++Q +R ++L F+ G P++VAT VAARGLDI +V+ VIN+ P E+YVHRIGRT
Sbjct: 308 GDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRT 367
Query: 521 GRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDAL 559
GR G G++ +FF N + +L+++L EA+Q VP L
Sbjct: 368 GRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWL 406
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 256 bits (653), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 152/409 (37%), Positives = 237/409 (57%), Gaps = 18/409 (4%)
Query: 156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLL 213
F + ++ V VTG DV + ++ FT + L D ++ +K P+PIQ + P +
Sbjct: 36 FSKYNNIPVKVTGSDVPQP----IQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVIS 91
Query: 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDV 273
+GRD + A+TGSGKT AF +P + +L + +G+ P +++SPTRELA QI++
Sbjct: 92 SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGR---PQVVIVSPTRELAIQIFNE 148
Query: 274 LNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVV 333
+K VYGGTS + Q + G +VI TPGRL+D ++ + FVV
Sbjct: 149 ARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVV 208
Query: 334 LDEADRMLDMGFEEPVRFILSKISL--ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVG 391
LDEADRMLDMGF E +R I++ +++ Q +MFSAT+P E+ ++A E++ N V V +G
Sbjct: 209 LDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLK-NYVFVAIG 267
Query: 392 SEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRR 451
A DV Q + ++ ++ +L+ +L + Q + +VF + AD L + L
Sbjct: 268 IVG-GACSDVKQTIYEVNKYAKRSKLIEILSE----QADGTIVFVETKRGADFLASFLSE 322
Query: 452 SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTE 511
+ +IHG + Q +R ++L FK G+ +++AT VA+RGLDI +++ VINY P +
Sbjct: 323 KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKID 382
Query: 512 DYVHRIGRTGRAGKKGVSHTFF-TNHNKALAGELVNVLREARQVVPDAL 559
DYVHRIGRTGR G G + +FF ++A+A +LV +L + Q VPD L
Sbjct: 383 DYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFL 431
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 197/351 (56%), Gaps = 25/351 (7%)
Query: 181 SFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGR-DFIGIAKTGSGKTIAFGVPAM 237
+F E L D++L +N F+ P+ IQ P LN + + A+TGSGKT +F +P +
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 238 MHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQ 297
V N +A+ +L+PTRELA Q+ D + +K +YGG + PQ
Sbjct: 67 ELVNENNGIEAI---------ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQ 117
Query: 298 ITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357
I AL++ +IV+GTPGR++D I +L V + +LDEAD L+ GF + V IL+ +
Sbjct: 118 IKALKNA-NIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACN 176
Query: 358 LARQMVMFSATWPIEVHKLAEEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQR 416
+++++FSAT P E+ LA++Y D + +K + N ++ Q +++ R +
Sbjct: 177 KDKRILLFSATXPREILNLAKKYXGDYSFIKAKI-------NANIEQSYVEVNENERFEA 229
Query: 417 LLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFK 476
L LL K++ LVF + + L + LR G+K AIHG +Q +R K + LFK
Sbjct: 230 LCRLL----KNKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFK 285
Query: 477 EGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKG 527
+ +++ATDV +RG+D+ D+ VINY P E Y HRIGRTGRAGKKG
Sbjct: 286 QKKIRILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKG 336
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 180/334 (53%), Gaps = 18/334 (5%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPL- 256
F+ PSPIQ A P + GRD + AK G+GKT AF +P + + V ++N +
Sbjct: 41 FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL---------EKVKPKLNKIQ 91
Query: 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
L++ PTRELA Q V+ GK CG+ + GGT+ + I L V I++GTPGR++
Sbjct: 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVL 151
Query: 317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKL 376
DL V LS+ S ++DEAD+ML F+ + ILS + Q ++FSAT+P+ V +
Sbjct: 152 DLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEF 211
Query: 377 AEEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVF 435
+++ P + ++ E+L + Q +++R Q+L L + K Q N+ ++F
Sbjct: 212 MVKHLHKPYEINLM---EELTLK-GITQYYAFVEER---QKLHCLNTLFSKLQINQAIIF 264
Query: 436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
+ L + G+ H + Q ER K F++G +V +D+ RG+DI
Sbjct: 265 CNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDI 324
Query: 496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS 529
V VVIN+ FP T E Y+HRIGR+GR G G++
Sbjct: 325 QAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLA 358
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 149/241 (61%), Gaps = 16/241 (6%)
Query: 154 SFFKEEDD-----GQVVVTGKDVKEAKY------KALKSFTESKLPDDVLGCC--KNFKN 200
+F++E D Q V T + KE K + +F E+ P +V+ +NF
Sbjct: 6 NFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTE 65
Query: 201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVL 260
P+ IQ+ WP L+G D +G+A+TGSGKT+++ +PA++H+ + + P+CLVL
Sbjct: 66 PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI---NHQPFLERGDGPICLVL 122
Query: 261 SPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIE 320
+PTRELA Q+ V + + C +KS C+YGG K PQI L GV+I I TPGRLID +E
Sbjct: 123 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 182
Query: 321 MNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEY 380
+L +++VLDEADRMLDMGFE +R I+ +I RQ +M+SATWP EV +LAE++
Sbjct: 183 CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 242
Query: 381 M 381
+
Sbjct: 243 L 243
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 137/207 (66%), Gaps = 5/207 (2%)
Query: 177 KALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
K + +F E+ P +V+ +NF P+ IQ+ WP L+G D +G+A+TGSGKT+++ +
Sbjct: 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 85
Query: 235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
PA++H+ + + P+CLVL+PTRELA Q+ V + + C +KS C+YGG K
Sbjct: 86 PAIVHI---NHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 142
Query: 295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
PQI L GV+I I TPGRLID +E +L +++VLDEADRMLDMGFE +R I+
Sbjct: 143 GPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 202
Query: 355 KISLARQMVMFSATWPIEVHKLAEEYM 381
+I RQ +M+SATWP EV +LAE+++
Sbjct: 203 QIRPDRQTLMWSATWPKEVRQLAEDFL 229
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 123/341 (36%), Positives = 187/341 (54%), Gaps = 33/341 (9%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
FKN + +QS P +L G++ + AKTGSGKT A+ +P + +G +
Sbjct: 14 FKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL----------ELGMK----S 59
Query: 258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
LV++PTREL Q+ + D G+ K VYGG + QI +R+ DIV+ TPGRL+D
Sbjct: 60 LVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNA-DIVVATPGRLLD 118
Query: 318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
L V LS V++DEAD M +MGF + ++ IL++ S + +FSAT P E+ K+
Sbjct: 119 LWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVV 178
Query: 378 EEYM-DPNPVKVVVGSEDLAANHDVMQIVEVLDD-RSRDQRLLALLEKYHKSQRNRVLVF 435
++++ + ++ +G ++ H + V V DD RS+ Q AL E K V+VF
Sbjct: 179 KDFITNYEEIEACIGLANV--EH---KFVHVKDDWRSKVQ---ALRENKDKG----VIVF 226
Query: 436 ALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495
+ +L + + + + G Q R +++ F+EG +++ TDVA+RGLDI
Sbjct: 227 VRTRNRVAKLVRLFDNA----IELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDI 282
Query: 496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNH 536
P VE VIN+ P Y+HRIGRTGR G+KG + TF N
Sbjct: 283 PLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFILNE 323
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 191 bits (486), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 118/357 (33%), Positives = 187/357 (52%), Gaps = 21/357 (5%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHV-LSNRKGKAVGKRVNPL 256
F+ PS IQ A ++ GRD I +++G+GKT F V + + + R+ +A
Sbjct: 21 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQA-------- 72
Query: 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
L+L+PTRELA Q+ L G V+S GGT+ I L G +V GTPGR+
Sbjct: 73 -LILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 131
Query: 317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKL 376
D+I + +VLDEAD ML+ GF+E + + + A Q+V+ SAT P EV ++
Sbjct: 132 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEVLEM 191
Query: 377 AEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFA 436
++M +P++++V ++L V V + + L + Y + ++F
Sbjct: 192 TNKFM-TDPIRILVKRDELTLEGIKQFFVAV---EREEWKFDTLCDLYDTLTITQAVIFC 247
Query: 437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496
+ + D L +R + + V ++HG Q ER + F+ G ++++TDV ARGLD+P
Sbjct: 248 NTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 307
Query: 497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQ 553
V ++INY P E Y+HRIGR+GR G+KGV+ F N + + VLR+ Q
Sbjct: 308 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDD-------IRVLRDIEQ 357
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/357 (32%), Positives = 186/357 (52%), Gaps = 21/357 (5%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHV-LSNRKGKAVGKRVNPL 256
F+ PS IQ A ++ GRD I +++G+GKT F + + + + R+ +A
Sbjct: 58 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQA-------- 109
Query: 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
L+L+PTRELA QI L G V+ GGT+ I L G +V GTPGR+
Sbjct: 110 -LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 168
Query: 317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKL 376
D+I + +VLDEAD ML+ GF+E + + + A Q+V+ SAT P E+ ++
Sbjct: 169 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEM 228
Query: 377 AEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFA 436
++M +P++++V ++L V V + + L + Y + ++F
Sbjct: 229 TNKFM-TDPIRILVKRDELTLEGIKQFFVAV---EREEWKFDTLCDLYDTLTITQAVIFC 284
Query: 437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496
+ + D L +R + + V ++HG Q ER + F+ G ++++TDV ARGLD+P
Sbjct: 285 NTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 344
Query: 497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQ 553
V ++INY P E Y+HRIGR+GR G+KGV+ F N + + +LR+ Q
Sbjct: 345 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD-------IRILRDIEQ 394
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/357 (32%), Positives = 186/357 (52%), Gaps = 21/357 (5%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHV-LSNRKGKAVGKRVNPL 256
F+ PS IQ A ++ GRD I +++G+GKT F + + + + R+ +A
Sbjct: 57 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQA-------- 108
Query: 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
L+L+PTRELA QI L G V+ GGT+ I L G +V GTPGR+
Sbjct: 109 -LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 167
Query: 317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKL 376
D+I + +VLDEAD ML+ GF+E + + + A Q+V+ SAT P E+ ++
Sbjct: 168 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEM 227
Query: 377 AEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFA 436
++M +P++++V ++L V V + + L + Y + ++F
Sbjct: 228 TNKFM-TDPIRILVKRDELTLEGIKQFFVAV---EREEWKFDTLCDLYDTLTITQAVIFC 283
Query: 437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496
+ + D L +R + + V ++HG Q ER + F+ G ++++TDV ARGLD+P
Sbjct: 284 NTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 343
Query: 497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQ 553
V ++INY P E Y+HRIGR+GR G+KGV+ F N + + +LR+ Q
Sbjct: 344 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD-------IRILRDIEQ 393
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/357 (32%), Positives = 186/357 (52%), Gaps = 21/357 (5%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHV-LSNRKGKAVGKRVNPL 256
F+ PS IQ A ++ GRD I +++G+GKT F + + + + R+ +A
Sbjct: 58 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQA-------- 109
Query: 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
L+L+PTRELA QI L G V+ GGT+ I L G +V GTPGR+
Sbjct: 110 -LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 168
Query: 317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKL 376
D+I + +VLDEAD ML+ GF+E + + + A Q+V+ SAT P E+ ++
Sbjct: 169 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEM 228
Query: 377 AEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFA 436
++M +P++++V ++L V V + + L + Y + ++F
Sbjct: 229 TNKFM-TDPIRILVKRDELTLEGIKQFFVAV---EREEWKFDTLCDLYDTLTITQAVIFC 284
Query: 437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496
+ + D L +R + + V ++HG Q ER + F+ G ++++TDV ARGLD+P
Sbjct: 285 NTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 344
Query: 497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQ 553
V ++INY P E Y+HRIGR+GR G+KGV+ F N + + +LR+ Q
Sbjct: 345 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD-------IRILRDIEQ 394
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 115/357 (32%), Positives = 186/357 (52%), Gaps = 21/357 (5%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHV-LSNRKGKAVGKRVNPL 256
F+ PS IQ A ++ GRD I +++G+GKT F + + + + R+ +A
Sbjct: 36 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQA-------- 87
Query: 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
L+L+PTRELA QI L G V+ GGT+ I L G +V GTPGR+
Sbjct: 88 -LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 146
Query: 317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKL 376
D+I + +VLDEAD ML+ GF+E + + + A Q+V+ SAT P E+ ++
Sbjct: 147 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEM 206
Query: 377 AEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFA 436
++M +P++++V ++L V V + + L + Y + ++F
Sbjct: 207 TNKFM-TDPIRILVKRDELTLEGIKQFFVAV---EREEWKFDTLCDLYDTLTITQAVIFC 262
Query: 437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496
+ + D L +R + + V ++HG Q ER + F+ G ++++TDV ARGLD+P
Sbjct: 263 NTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 322
Query: 497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQ 553
V ++INY P E Y+HRIGR+GR G+KGV+ F N + + +LR+ Q
Sbjct: 323 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD-------IRILRDIEQ 372
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 116/357 (32%), Positives = 186/357 (52%), Gaps = 21/357 (5%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHV-LSNRKGKAVGKRVNPL 256
F+ PS IQ A ++ GRD I +++G+GKT F V + + + R+ +A
Sbjct: 21 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQA-------- 72
Query: 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
L+L+PTRELA Q+ L G V+ GGT+ I L G +V GTPGR+
Sbjct: 73 -LILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 131
Query: 317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKL 376
D+I + +VLDEAD ML+ GF+E + + + A Q+V+ SAT P E+ ++
Sbjct: 132 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEM 191
Query: 377 AEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFA 436
++M +P++++V ++L V V + + L + Y + ++F
Sbjct: 192 TNKFM-TDPIRILVKRDELTLEGIKQFFVAV---EREEWKFDTLCDLYDTLTITQAVIFC 247
Query: 437 LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496
+ + D L +R + + V ++HG Q ER + F+ G ++++TDV ARGLD+P
Sbjct: 248 NTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 307
Query: 497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQ 553
V ++INY P E Y+HRIGR+GR G+KGV+ F N + + VLR+ Q
Sbjct: 308 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDD-------IRVLRDIEQ 357
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 189/370 (51%), Gaps = 29/370 (7%)
Query: 180 KSFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVP 235
KSF E L ++L F+ PS IQ A P LL+ R+ I +++G+GKT AF +
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 236 AMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKS-VCVYGGTSK 294
+ V + +P + L+P+RELA Q +V+ + GK + S + V K
Sbjct: 65 MLTRVNP--------EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK 116
Query: 295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM-GFEEPVRFIL 353
QI A +++GTPG ++DL+ + L ++ VLDEAD MLD G + +
Sbjct: 117 NKQINA-----QVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVK 171
Query: 354 SKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSR 413
+ Q+V+FSAT+ V + A++ + PN + + + ++ N D ++ + +D ++
Sbjct: 172 RFLPKDTQLVLFSATFADAVRQYAKKIV-PNANTLELQTNEV--NVDAIKQL-YMDCKNE 227
Query: 414 DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLS 473
+ L E Y ++F + A+ L L+ G +V +HG ER + +
Sbjct: 228 ADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLID 287
Query: 474 LFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTE------DYVHRIGRTGRAGKKG 527
F+EG +++ T+V ARG+DIP V +V+NY P Y+HRIGRTGR G+KG
Sbjct: 288 DFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKG 347
Query: 528 VSHTFFTNHN 537
V+ +F + N
Sbjct: 348 VAISFVHDKN 357
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 182/347 (52%), Gaps = 13/347 (3%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
F+ PS IQ A ++ G D + A++G+GKT F + A+ + ++ K P
Sbjct: 42 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKA--------PQA 93
Query: 258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
L+L+PTRELA QI V+ +K GGTS LR IV+GTPGR+ D
Sbjct: 94 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFD 152
Query: 318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
I+ ++ +LDEAD ML GF+E + I + + Q+V+ SAT P +V ++
Sbjct: 153 NIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVT 212
Query: 378 EEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFAL 437
++M NPV+++V ++L V V ++ + + L L + +Q ++F
Sbjct: 213 TKFM-RNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQ---AVIFCN 268
Query: 438 YQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497
+ + + L LR + V AI+ Q ER + F+ G+ ++++TD+ ARG+D+
Sbjct: 269 TRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 328
Query: 498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGEL 544
V +VINY P E+Y+HRIGR GR G+KGV+ F TN + EL
Sbjct: 329 VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREL 375
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 189/370 (51%), Gaps = 29/370 (7%)
Query: 180 KSFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVP 235
KSF E L ++L F+ PS IQ A P LL+ R+ I +++G+GKT AF +
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 236 AMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKS-VCVYGGTSK 294
+ V + +P + L+P+RELA Q +V+ + GK + S + V K
Sbjct: 65 MLTRVNP--------EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK 116
Query: 295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM-GFEEPVRFIL 353
QI A +++GTPG ++DL+ + L ++ VLDEAD MLD G + +
Sbjct: 117 NKQINA-----QVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVK 171
Query: 354 SKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSR 413
+ Q+V+FSAT+ V + A++ + PN + + + ++ N D ++ + +D ++
Sbjct: 172 RFLPKDTQLVLFSATFADAVRQYAKKIV-PNANTLELQTNEV--NVDAIKQL-YMDCKNE 227
Query: 414 DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLS 473
+ L E Y ++F + A+ L L+ G +V +HG ER + +
Sbjct: 228 ADKFDVLTELYGVMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLID 287
Query: 474 LFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTE------DYVHRIGRTGRAGKKG 527
F+EG +++ T+V ARG+DIP V +V+NY P Y+HRIGRTGR G+KG
Sbjct: 288 DFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKG 347
Query: 528 VSHTFFTNHN 537
V+ +F + N
Sbjct: 348 VAISFVHDKN 357
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 131/233 (56%), Gaps = 9/233 (3%)
Query: 156 FKEEDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLL 213
F + D V VTG D +++F E KL + +++ P+PIQ +A P +L
Sbjct: 1 FDKYDSIPVSVTGPDYSATN--VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAIL 58
Query: 214 NGRDFIGIAKTGSGKTIAFGVPAMMH-VLSNRKGKAVGKRVNPLCLVLSPTRELADQIYD 272
RD + A+TGSGKT AF +P + H V + + K P CL+L+PTRELA QI
Sbjct: 59 EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILS 118
Query: 273 VLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFV 332
++S VYGG QI ++ G +++ TPGRL+D IE N L ++
Sbjct: 119 ESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYI 178
Query: 333 VLDEADRMLDMGFEEPVRFILSKISLA----RQMVMFSATWPIEVHKLAEEYM 381
VLDEADRMLDMGFE +R I+ + ++ RQ +MFSAT+P E+ KLA +++
Sbjct: 179 VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFL 231
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 158 bits (399), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 86/189 (45%), Positives = 120/189 (63%), Gaps = 4/189 (2%)
Query: 201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVL 260
P+PIQS AWP +L G D I +A+TG+GKT+++ +P +H+ S + +R P LVL
Sbjct: 43 PTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE--QRNGPGMLVL 100
Query: 261 SPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIE 320
+PTRELA + + G+KS+C+YGG ++ QI + GVDI+I TPGRL DL
Sbjct: 101 TPTRELALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQM 159
Query: 321 MNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEY 380
N +L ++++V+DEAD+MLDM FE +R IL + RQ VM SATWP V +LA Y
Sbjct: 160 NNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSY 219
Query: 381 M-DPNPVKV 388
+ DP V V
Sbjct: 220 LKDPMIVYV 228
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/370 (31%), Positives = 188/370 (50%), Gaps = 15/370 (4%)
Query: 177 KALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
K + F + +L +++L F+ PS IQ A ++ G D + A++G+GKT F +
Sbjct: 18 KVVYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSI 77
Query: 235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
A+ + ++ K P L L+PTRELA QI V+ +K GGTS
Sbjct: 78 AALQRIDTSVKA--------PQALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSF 129
Query: 295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
LR IV+GTPGR+ D I+ ++ +LDEAD L GF+E + I +
Sbjct: 130 VEDAEGLRDA-QIVVGTPGRVFDNIQRRRFRTDKIKXFILDEADEXLSSGFKEQIYQIFT 188
Query: 355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414
+ Q+V+ SAT P +V ++ ++ NPV+++V ++L V V ++ +
Sbjct: 189 LLPPTTQVVLLSATXPNDVLEVTTKFX-RNPVRILVKKDELTLEGIKQFYVNVEEEEYKY 247
Query: 415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
+ L L + +Q ++F + + + L LR + V AI+ Q ER
Sbjct: 248 ECLTDLYDSISVTQ---AVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKE 304
Query: 475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
F+ G+ ++++TD+ ARG+D+ V +VINY P E+Y+HRIGR GR G+KGV+ F T
Sbjct: 305 FRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 364
Query: 535 NHNKALAGEL 544
N + EL
Sbjct: 365 NEDVGAXREL 374
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 183/361 (50%), Gaps = 15/361 (4%)
Query: 181 SFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMM 238
SF + L + +L F+ PS IQ A + G D I A++G+GKT F + +
Sbjct: 41 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 100
Query: 239 HVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQI 298
+ + K LVL+PTRELA QI V+ G G GGT+ + ++
Sbjct: 101 QIELDLKATQ--------ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEV 152
Query: 299 TALR-SGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357
L+ I++GTPGR+ D++ + VLDEAD ML GF++ + I K++
Sbjct: 153 QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN 212
Query: 358 LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRL 417
Q+V+ SAT P +V ++ +++M +P++++V E+L + V + +L
Sbjct: 213 SNTQVVLLSATMPSDVLEVTKKFMR-DPIRILVKKEELTLEGIRQFYINV---EREEWKL 268
Query: 418 LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE 477
L + Y + ++F + + D L + + V A+HG Q ER + F+
Sbjct: 269 DTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS 328
Query: 478 GTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN 537
G+ +++ TD+ ARG+D+ V +VINY P E+Y+HRIGR GR G+KGV+ T +
Sbjct: 329 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 388
Query: 538 K 538
K
Sbjct: 389 K 389
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 183/361 (50%), Gaps = 15/361 (4%)
Query: 181 SFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMM 238
SF + L + +L F+ PS IQ A + G D I A++G+GKT F + +
Sbjct: 15 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 74
Query: 239 HVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQI 298
+ + K LVL+PTRELA QI V+ G G GGT+ + ++
Sbjct: 75 QIELDLKATQ--------ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEV 126
Query: 299 TALR-SGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357
L+ I++GTPGR+ D++ + VLDEAD ML GF++ + I K++
Sbjct: 127 QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN 186
Query: 358 LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRL 417
Q+V+ SAT P +V ++ +++M +P++++V E+L + V + +L
Sbjct: 187 SNTQVVLLSATMPSDVLEVTKKFM-RDPIRILVKKEELTLEGIRQFYINV---EREEWKL 242
Query: 418 LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE 477
L + Y + ++F + + D L + + V A+HG Q ER + F+
Sbjct: 243 DTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS 302
Query: 478 GTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN 537
G+ +++ TD+ ARG+D+ V +VINY P E+Y+HRIGR GR G+KGV+ T +
Sbjct: 303 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 362
Query: 538 K 538
K
Sbjct: 363 K 363
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/359 (32%), Positives = 187/359 (52%), Gaps = 28/359 (7%)
Query: 204 IQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLS 261
IQ A P LL+ R+ IG +++G+GKT AF + + +R +V K P + L+
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML-----SRVDASVPK---PQAICLA 196
Query: 262 PTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEM 321
P+RELA QI DV+ + GK VK+ +G P+ + IVIGTPG ++DL++
Sbjct: 197 PSRELARQIMDVVTEMGKYTEVKTA--FGIKDSVPK--GAKIDAQIVIGTPGTVMDLMKR 252
Query: 322 NVCHLSEVSFVVLDEADRMLDM-GFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEY 380
++ VLDEAD MLD G + I + Q+V+FSAT+ V K AE +
Sbjct: 253 RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERF 312
Query: 381 MDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQL 440
PN ++ + +E+L+ + Q+ +D +S + + L+E Y + ++F +
Sbjct: 313 A-PNANEIRLKTEELSV-EGIKQLY--MDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKD 368
Query: 441 EADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEV 500
A+ + + G V + G +R + F+ GT ++V T+V ARG+D+ V +
Sbjct: 369 TAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNL 428
Query: 501 VINYSFPLTT------EDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQ 553
V+NY PL + Y+HRIGRTGR G+ GVS F H+K + E +N ++E Q
Sbjct: 429 VVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV--HDKK-SWEEMNAIQEYFQ 484
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 111/195 (56%), Gaps = 8/195 (4%)
Query: 196 KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255
+ P+PIQ+ A P L G+D IG A+TG+GKT+AF +P ++ R + + P
Sbjct: 19 RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALP-----IAERLAPSQERGRKP 73
Query: 256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL 315
LVL+PTRELA Q+ L +K V VYGGT Q AL G D V+ TPGR
Sbjct: 74 RALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRA 131
Query: 316 IDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHK 375
+D + V LS V VLDEAD ML MGFEE V +LS +RQ ++FSAT P +
Sbjct: 132 LDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKR 191
Query: 376 LAEEYMDPNPVKVVV 390
LAE YM NPV + V
Sbjct: 192 LAERYMK-NPVLINV 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 152 bits (384), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 111/195 (56%), Gaps = 8/195 (4%)
Query: 196 KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255
+ P+PI++ A P L G+D IG A+TG+GKT+AF +P ++ R + + P
Sbjct: 19 RGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALP-----IAERLAPSQERGRKP 73
Query: 256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL 315
LVL+PTRELA Q+ L +K V VYGGT Q AL G D V+ TPGR
Sbjct: 74 RALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRA 131
Query: 316 IDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHK 375
+D + V LS V VLDEAD ML MGFEE V +LS +RQ ++FSAT P +
Sbjct: 132 LDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKR 191
Query: 376 LAEEYMDPNPVKVVV 390
LAE YM NPV + V
Sbjct: 192 LAERYMK-NPVLINV 205
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 151 bits (382), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 107/345 (31%), Positives = 168/345 (48%), Gaps = 15/345 (4%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
F++PS +Q P + G D + AK+G GKT F V A + L G+
Sbjct: 27 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVF-VLATLQQLEPVTGQVS-------V 78
Query: 258 LVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGV-DIVIGTPGRL 315
LV+ TRELA QI K VK +GG S + L+ IV+GTPGR+
Sbjct: 79 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 138
Query: 316 IDLIEMNVCHLSEVSFVVLDEADRMLD-MGFEEPVRFILSKISLARQMVMFSATWPIEVH 374
+ L +L + +LDEAD+ML+ + V+ I +Q++MFSAT E+
Sbjct: 139 LALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR 198
Query: 375 KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLV 434
+ ++M +P+++ V E H + Q L D ++++L LL+ + N+V++
Sbjct: 199 PVCRKFMQ-DPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL---EFNQVVI 254
Query: 435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494
F L +L + +AIH Q ER FK+ ++VAT++ RG+D
Sbjct: 255 FVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMD 314
Query: 495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539
I V + NY P ++ Y+HR+ R GR G KG++ TF ++ N A
Sbjct: 315 IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 359
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 167/345 (48%), Gaps = 15/345 (4%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
F++PS +Q P + G D + AK+G GKT F V A + L G+
Sbjct: 28 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVF-VLATLQQLEPVTGQVS-------V 79
Query: 258 LVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGV-DIVIGTPGRL 315
LV+ TRELA QI K VK +GG S + L+ IV+GTPGR+
Sbjct: 80 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 139
Query: 316 IDLIEMNVCHLSEVSFVVLDEADRMLD-MGFEEPVRFILSKISLARQMVMFSATWPIEVH 374
+ L +L + +LDE D+ML+ + V+ I +Q++MFSAT E+
Sbjct: 140 LALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR 199
Query: 375 KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLV 434
+ ++M +P+++ V E H + Q L D ++++L LL+ + N+V++
Sbjct: 200 PVCRKFMQ-DPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL---EFNQVVI 255
Query: 435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494
F L +L + +AIH Q ER FK+ ++VAT++ RG+D
Sbjct: 256 FVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMD 315
Query: 495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539
I V + NY P ++ Y+HR+ R GR G KG++ TF ++ N A
Sbjct: 316 IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 360
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 167/345 (48%), Gaps = 15/345 (4%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
F++PS +Q P + G D + AK+G GKT F V A + L G+
Sbjct: 28 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVF-VLATLQQLEPVTGQVS-------V 79
Query: 258 LVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGV-DIVIGTPGRL 315
LV+ TRELA QI K VK +GG S + L+ IV+GTPGR+
Sbjct: 80 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 139
Query: 316 IDLIEMNVCHLSEVSFVVLDEADRMLD-MGFEEPVRFILSKISLARQMVMFSATWPIEVH 374
+ L +L + +LDE D+ML+ + V+ I +Q++MFSAT E+
Sbjct: 140 LALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR 199
Query: 375 KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLV 434
+ ++M +P+++ V E H + Q L D ++++L LL+ + N+V++
Sbjct: 200 PVCRKFMQ-DPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL---EFNQVVI 255
Query: 435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494
F L +L + +AIH Q ER FK+ ++VAT++ RG+D
Sbjct: 256 FVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMD 315
Query: 495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539
I V + NY P ++ Y+HR+ R GR G KG++ TF ++ N A
Sbjct: 316 IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 360
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 190/386 (49%), Gaps = 33/386 (8%)
Query: 159 EDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLLN-- 214
++ QV V +D Y ++KSF E +L +L F PS IQ +A P +L
Sbjct: 72 DNTNQVEVLQRDPNSPLY-SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEP 130
Query: 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274
++ I +++G+GKT AF + + V K P CL LSPT ELA Q V+
Sbjct: 131 PQNLIAQSQSGTGKTAAFVLAMLSQVEPANK--------YPQCLCLSPTYELALQTGKVI 182
Query: 275 NDAGK--PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLI-EMNVCHLSEVSF 331
GK P + V G ++ Q + IVIGTPG ++D ++ ++
Sbjct: 183 EQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238
Query: 332 VVLDEADRML-DMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYM-DPNPVKVV 389
VLDEAD M+ G ++ I + QM++FSAT+ V K A++ + DPN +K+
Sbjct: 239 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298
Query: 390 VGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENML 449
E L D ++ VL SRD++ AL Y + ++F + A L L
Sbjct: 299 REEETL----DTIKQYYVLCS-SRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAEL 353
Query: 450 RRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPL- 508
+ G +V + G+ +R + F+EG ++V T+V ARG+D+ V VVIN+ P+
Sbjct: 354 SKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD 413
Query: 509 -----TTEDYVHRIGRTGRAGKKGVS 529
E Y+HRIGRTGR GK+G++
Sbjct: 414 KDGNPDNETYLHRIGRTGRFGKRGLA 439
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 190/386 (49%), Gaps = 33/386 (8%)
Query: 159 EDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLLN-- 214
++ QV V +D Y ++KSF E +L +L F PS IQ +A P +L
Sbjct: 5 DNTNQVEVLQRDPNSPLY-SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEP 63
Query: 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274
++ I +++G+GKT AF + + V K P CL LSPT ELA Q V+
Sbjct: 64 PQNLIAQSQSGTGKTAAFVLAMLSQVEPANK--------YPQCLCLSPTYELALQTGKVI 115
Query: 275 NDAGK--PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLI-EMNVCHLSEVSF 331
GK P + V G ++ Q + IVIGTPG ++D ++ ++
Sbjct: 116 EQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 171
Query: 332 VVLDEADRML-DMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYM-DPNPVKVV 389
VLDEAD M+ G ++ I + QM++FSAT+ V K A++ + DPN +K+
Sbjct: 172 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 231
Query: 390 VGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENML 449
E L D ++ VL SRD++ AL Y + ++F + A L L
Sbjct: 232 REEETL----DTIKQYYVLCS-SRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAEL 286
Query: 450 RRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPL- 508
+ G +V + G+ +R + F+EG ++V T+V ARG+D+ V VVIN+ P+
Sbjct: 287 SKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD 346
Query: 509 -----TTEDYVHRIGRTGRAGKKGVS 529
E Y+HRIGRTGR GK+G++
Sbjct: 347 KDGNPDNETYLHRIGRTGRFGKRGLA 372
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 190/386 (49%), Gaps = 33/386 (8%)
Query: 159 EDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLLN-- 214
++ QV V +D Y ++KSF E +L +L F PS IQ +A P +L
Sbjct: 21 DNTNQVEVLQRDPNSPLY-SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEP 79
Query: 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274
++ I +++G+GKT AF + + V K P CL LSPT ELA Q V+
Sbjct: 80 PQNLIAQSQSGTGKTAAFVLAMLSQVEPANK--------YPQCLCLSPTYELALQTGKVI 131
Query: 275 NDAGK--PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLI-EMNVCHLSEVSF 331
GK P + V G ++ Q + IVIGTPG ++D ++ ++
Sbjct: 132 EQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 187
Query: 332 VVLDEADRML-DMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYM-DPNPVKVV 389
VLDEAD M+ G ++ I + QM++FSAT+ V K A++ + DPN +K+
Sbjct: 188 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 247
Query: 390 VGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENML 449
E L D ++ VL SRD++ AL Y + ++F + A L L
Sbjct: 248 REEETL----DTIKQYYVLCS-SRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAEL 302
Query: 450 RRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPL- 508
+ G +V + G+ +R + F+EG ++V T+V ARG+D+ V VVIN+ P+
Sbjct: 303 SKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD 362
Query: 509 -----TTEDYVHRIGRTGRAGKKGVS 529
E Y+HRIGRTGR GK+G++
Sbjct: 363 KDGNPDNETYLHRIGRTGRFGKRGLA 388
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 190/386 (49%), Gaps = 33/386 (8%)
Query: 159 EDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLLN-- 214
++ QV V +D Y ++KSF E +L +L F PS IQ +A P +L
Sbjct: 42 DNTNQVEVLQRDPNSPLY-SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEP 100
Query: 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274
++ I +++G+GKT AF + + V K P CL LSPT ELA Q V+
Sbjct: 101 PQNLIAQSQSGTGKTAAFVLAMLSQVEPANK--------YPQCLCLSPTYELALQTGKVI 152
Query: 275 NDAGK--PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLI-EMNVCHLSEVSF 331
GK P + V G ++ Q + IVIGTPG ++D ++ ++
Sbjct: 153 EQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 208
Query: 332 VVLDEADRML-DMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYM-DPNPVKVV 389
VLDEAD M+ G ++ I + QM++FSAT+ V K A++ + DPN +K+
Sbjct: 209 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 268
Query: 390 VGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENML 449
E L D ++ VL SRD++ AL Y + ++F + A L L
Sbjct: 269 REEETL----DTIKQYYVLCS-SRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAEL 323
Query: 450 RRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPL- 508
+ G +V + G+ +R + F+EG ++V T+V ARG+D+ V VVIN+ P+
Sbjct: 324 SKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD 383
Query: 509 -----TTEDYVHRIGRTGRAGKKGVS 529
E Y+HRIGRTGR GK+G++
Sbjct: 384 KDGNPDNETYLHRIGRTGRFGKRGLA 409
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 115/372 (30%), Positives = 182/372 (48%), Gaps = 31/372 (8%)
Query: 198 FKNPSPIQSHAWPFLLNGRD--FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255
F +P+Q +L+ D I AKTG+GKT AF +P H+++ + +
Sbjct: 41 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVK--- 97
Query: 256 LCLVLSPTRELADQI-YDVLNDAGKPCGVKS---VCVYGGTSKQPQITAL-RSGVDIVIG 310
++++PTR+LA QI +V G+K V + GGT + + + + +IVI
Sbjct: 98 -AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIA 156
Query: 311 TPGRLIDLIEMNVCHLSE-VSFVVLDEADRMLDMGFE---EPVRFIL----SKISLARQM 362
TPGRLID++E V + VLDEADR+L++GF E + IL SK + +
Sbjct: 157 TPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKT 216
Query: 363 VMFSATWPIEVHKLAEEYMDPNPVKVV--VGSEDLAANHDVMQIVEVLDDRSRDQRLLAL 420
++FSAT +V KLA M+ + V + A+ + Q V + + + + A
Sbjct: 217 LLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFA--NSIFAA 274
Query: 421 LEKYHKSQRNR-----VLVFALYQLEADRLENMLRRSGWK---VVAIHGKKAQHERTKSL 472
+E K + R ++FA L ++L+ K ++ HGK Q++RT +
Sbjct: 275 VEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 334
Query: 473 SLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTF 532
FK+ ++V TDV ARG+D P+V V+ P +Y+HRIGRT R+GK+G S F
Sbjct: 335 KRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF 394
Query: 533 FTNHNKALAGEL 544
EL
Sbjct: 395 ICKDELPFVREL 406
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 115/372 (30%), Positives = 183/372 (49%), Gaps = 31/372 (8%)
Query: 198 FKNPSPIQSHAWPFLLNGRD--FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255
F +P+Q +L+ D I AKTG+GKT AF +P H+++ + +
Sbjct: 92 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVK--- 148
Query: 256 LCLVLSPTRELADQI-YDVLNDAGKPCGVKS---VCVYGGTSKQPQITAL-RSGVDIVIG 310
++++PTR+LA QI +V G+K V + GGT + + + + +IVI
Sbjct: 149 -AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIA 207
Query: 311 TPGRLIDLIE-MNVCHLSEVSFVVLDEADRMLDMGFE---EPVRFIL----SKISLARQM 362
TPGRLID++E + V + VLDEADR+L++GF E + IL SK + +
Sbjct: 208 TPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKT 267
Query: 363 VMFSATWPIEVHKLAEEYMDPNPVKVV--VGSEDLAANHDVMQIVEVLDDRSRDQRLLAL 420
++FSAT +V KLA M+ + V + A+ + Q V + + + + A
Sbjct: 268 LLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFA--NSIFAA 325
Query: 421 LEKYHKSQRNR-----VLVFALYQLEADRLENMLRRSGWK---VVAIHGKKAQHERTKSL 472
+E K + R ++FA L ++L+ K ++ HGK Q++RT +
Sbjct: 326 VEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 385
Query: 473 SLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTF 532
FK+ ++V TDV ARG+D P+V V+ P +Y+HRIGRT R+GK+G S F
Sbjct: 386 KRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF 445
Query: 533 FTNHNKALAGEL 544
EL
Sbjct: 446 ICKDELPFVREL 457
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 118/374 (31%), Positives = 186/374 (49%), Gaps = 35/374 (9%)
Query: 198 FKNPSPIQSHAWPFLLNGRD--FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255
F +P+Q +L+ D I AKTG+GKT AF +P H+++ + +
Sbjct: 41 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVK--- 97
Query: 256 LCLVLSPTRELADQI-YDVLNDAGKPCGVKS---VCVYGGT---SKQPQITALRSGVDIV 308
++++PTR+LA QI +V G+K V + GGT + ++ LR +IV
Sbjct: 98 -AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRP--NIV 154
Query: 309 IGTPGRLIDLIE-MNVCHLSEVSFVVLDEADRMLDMGFE---EPVRFIL----SKISLAR 360
I TPGRLID++E + V + VLDEADR+L++GF E + IL SK +
Sbjct: 155 IATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNI 214
Query: 361 QMVMFSATWPIEVHKLAEEYMDPNPVKVV--VGSEDLAANHDVMQIVEVLDDRSRDQRLL 418
+ ++FSAT +V KLA M+ + V + A+ + Q V V+ ++ + +
Sbjct: 215 KTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV-VISEKFANS-IF 272
Query: 419 ALLEKYHKSQRNR-----VLVFALYQLEADRLENMLRRSGWK---VVAIHGKKAQHERTK 470
A +E K + R ++FA L ++L+ K ++ HGK Q++RT
Sbjct: 273 AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 332
Query: 471 SLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSH 530
+ FK+ ++V TDV ARG+D P+V V+ P +Y+HRIGRT R+GK+G S
Sbjct: 333 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSV 392
Query: 531 TFFTNHNKALAGEL 544
F EL
Sbjct: 393 LFICKDELPFVREL 406
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 114/216 (52%), Gaps = 12/216 (5%)
Query: 180 KSFTESKLPDDVLGCCKN--FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAM 237
K+F + + D + C + P+ IQ A P L GRD IG+A+TGSGKT AF +P +
Sbjct: 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 102
Query: 238 MHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQ 297
+L + LVL+PTRELA QI + G GV+S + GG Q
Sbjct: 103 NALLETPQ--------RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQ 154
Query: 298 ITALRSGVDIVIGTPGRLIDLIE-MNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356
AL I+I TPGRLID +E +L + ++V+DEADR+L+M FE V IL I
Sbjct: 155 SLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 214
Query: 357 SLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGS 392
R+ +FSAT +V KL + NPVK V S
Sbjct: 215 PRDRKTFLFSATMTKKVQKLQRAALK-NPVKCAVSS 249
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 107/177 (60%), Gaps = 11/177 (6%)
Query: 390 VGSEDL------AANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEAD 443
+G+E+L AA+ DV+Q VE + + ++ LL L+K VL+FA + + D
Sbjct: 13 LGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPP----VLIFAEKKADVD 68
Query: 444 RLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVIN 503
+ L G + VAIHG K Q ERTK++ F+EG ++VATDVA++GLD P ++ VIN
Sbjct: 69 AIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN 128
Query: 504 YSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNH-NKALAGELVNVLREARQVVPDAL 559
Y P E+YVHRIGRTG +G G++ TF ++++ +L +L EA+Q VP L
Sbjct: 129 YDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVL 185
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 99/164 (60%), Gaps = 2/164 (1%)
Query: 396 AANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWK 455
+ + ++ Q V +++ + LL LL K + LVF + AD LE+ L G+
Sbjct: 15 STSENITQKVVWVEESDKRSFLLDLLNATGKD--SLTLVFVETKKGADSLEDFLYHEGYA 72
Query: 456 VVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVH 515
+IHG ++Q +R ++L F+ G P++VAT VAARGLDI +V+ VIN+ P E+YVH
Sbjct: 73 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 132
Query: 516 RIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDAL 559
RIGRTGR G G++ +FF N + +L+++L EA+Q VP L
Sbjct: 133 RIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWL 176
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 111/192 (57%), Gaps = 5/192 (2%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
F N + IQ + LL GRD + AKTGSGKT+AF +PA+ ++ R G V
Sbjct: 74 FTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGV---- 129
Query: 258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
L+LSPTRELA Q + VL + + GG+++ + L +G++I++ TPGRL+D
Sbjct: 130 LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLD 189
Query: 318 LIEMNVCHLSE-VSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKL 376
++ + + + +V+DEADR+LD+GFEE ++ I+ + RQ ++FSAT +V L
Sbjct: 190 HMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDL 249
Query: 377 AEEYMDPNPVKV 388
A + P+ V
Sbjct: 250 ARISLKKEPLYV 261
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 105/186 (56%), Gaps = 9/186 (4%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
++ PSPIQ + P L+GRD + AK G+GK+ A+ +P ++ L +K N
Sbjct: 23 WEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP-LLERLDLKKD-------NIQA 74
Query: 258 LVLSPTRELADQIYDVLNDAGKPCG-VKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI 316
+V+ PTRELA Q+ + K G K + GGT+ + I L V +VI TPGR++
Sbjct: 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRIL 134
Query: 317 DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKL 376
DLI+ V + V +VLDEAD++L F + + I+ + RQ++++SAT+P+ V K
Sbjct: 135 DLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKF 194
Query: 377 AEEYMD 382
+++
Sbjct: 195 MNSHLE 200
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 12/221 (5%)
Query: 177 KALKSFTESKLPDDVLGCC--KNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
K + F + +L +++L F+ PS IQ A ++ G D + A++G+GKT F +
Sbjct: 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 70
Query: 235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
A+ + ++ K P L+L+PTRELA QI V+ +K GGTS
Sbjct: 71 AALQRIDTSVKA--------PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSF 122
Query: 295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354
LR IV+GTPGR+ D I+ ++ +LDEAD ML GF+E + I +
Sbjct: 123 VEDAEGLRDA-QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFT 181
Query: 355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDL 395
+ Q+V+ SAT P +V ++ ++M NPV+++V ++L
Sbjct: 182 LLPPTTQVVLLSATMPNDVLEVTTKFMR-NPVRILVKKDEL 221
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 103/184 (55%), Gaps = 10/184 (5%)
Query: 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAM--MHVLSNRKGKAVGKRVN 254
++ + IQ L G+D +G AKTGSGKT+AF VP + ++ L +G
Sbjct: 44 QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLG---- 99
Query: 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGR 314
L++SPTRELA Q ++VL GK + + GG + + + + ++I++ TPGR
Sbjct: 100 --VLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGR 156
Query: 315 LIDLIEMNVC-HLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEV 373
L+ ++ V H +++ +VLDEADR+LDMGF + + ++ + RQ ++FSAT V
Sbjct: 157 LLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSV 216
Query: 374 HKLA 377
LA
Sbjct: 217 KDLA 220
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
F+ PS IQ A ++ G D + A++G+GKT F + A+ + ++ K P
Sbjct: 41 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKA--------PQA 92
Query: 258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID 317
L+L+PTRELA QI V+ +K GGTS LR IV+GTPGR+ D
Sbjct: 93 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFD 151
Query: 318 LIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLA 377
I+ ++ +LDEAD ML GF+E + I + + Q+V+ SAT P +V ++
Sbjct: 152 NIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVT 211
Query: 378 EEYMDPNPVKVVV 390
++M NPV+++V
Sbjct: 212 TKFMR-NPVRILV 223
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 109/198 (55%), Gaps = 12/198 (6%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHV-LSNRKGKAVGKRVNPL 256
F+ PS IQ A + G D I A++G+GKT F + + + + ++ +A
Sbjct: 50 FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQA-------- 101
Query: 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRS-GVDIVIGTPGRL 315
LVL+PTRELA QI V+ G G GGT+ + ++ L++ IV+GTPGR+
Sbjct: 102 -LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRV 160
Query: 316 IDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHK 375
D++ + VLDEAD ML GF++ + I K++ + Q+V+ SAT P +V +
Sbjct: 161 FDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLE 220
Query: 376 LAEEYMDPNPVKVVVGSE 393
+ +++M +P++++V E
Sbjct: 221 VTKKFMR-DPIRILVKKE 237
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 106/196 (54%), Gaps = 14/196 (7%)
Query: 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAM-MHVLSNRKGKAVGKRVNP 255
F+ PSP+Q A P G D I AK+G+GKT F A+ VL N +
Sbjct: 43 GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQ-------- 94
Query: 256 LCLVLSPTRELADQIYDVLNDAG-KPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGR 314
L+L+PTRE+A QI+ V+ G K G++ GGT T L+ I +G+PGR
Sbjct: 95 -ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CHIAVGSPGR 152
Query: 315 LIDLIEMNVCHLSEVSFVVLDEADRMLDMG-FEEPVRFILSKISLARQMVMFSATWPIEV 373
+ LIE++ + + +LDEAD++L+ G F+E + +I S + ++QM+ SAT+P +
Sbjct: 153 IKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFL 212
Query: 374 HKLAEEYM-DPNPVKV 388
+YM DP V++
Sbjct: 213 ANALTKYMRDPTFVRL 228
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 12/217 (5%)
Query: 177 KALKSFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGV 234
+ + SF + L + +L F+ PS IQ A + G D I A++G+G T F +
Sbjct: 12 EIVDSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAI 71
Query: 235 PAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294
+ + + LVL+PTRELA QI V+ G G GGT+
Sbjct: 72 SILQQIELDLXATQ--------ALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNV 123
Query: 295 QPQITALR-SGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFIL 353
+ ++ L+ I++GTPGR+ D++ + VLDEAD ML GF + + I
Sbjct: 124 RAEVQXLQMEAPHIIVGTPGRVFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIF 183
Query: 354 SKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVV 390
++ Q+V+ SAT P +V ++ +M +P++++V
Sbjct: 184 QXLNSNTQVVLLSATMPSDVLEVTXXFMR-DPIRILV 219
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 95/198 (47%), Gaps = 13/198 (6%)
Query: 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPL 256
F P+ IQ P L G +G ++TG+GKT A+ +P K +R
Sbjct: 23 RFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIX--------EKIKPERAEVQ 74
Query: 257 CLVLSPTRELADQIYDVLNDAGKPCG----VKSVCVYGGTSKQPQITALRSGVDIVIGTP 312
++ +PTRELA QIY K C + + C+ GGT KQ + L IVIGTP
Sbjct: 75 AVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQPHIVIGTP 134
Query: 313 GRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIE 372
GR+ D I + +V+DEAD LD GF V I ++ Q ++FSAT P +
Sbjct: 135 GRINDFIREQALDVHTAHILVVDEADLXLDXGFITDVDQIAARXPKDLQXLVFSATIPEK 194
Query: 373 VHKLAEEYMDPNPVKVVV 390
+ ++Y + NP V V
Sbjct: 195 LKPFLKKYXE-NPTFVHV 211
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 117/217 (53%), Gaps = 17/217 (7%)
Query: 185 SKLPDDVLGCCKNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNR 244
S+L ++L F+ P+PIQ A P +L+GR+ + A TGSGKT+AF +P +M + +
Sbjct: 38 SRLLQNILDA--GFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL---K 92
Query: 245 KGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRS- 303
+ G R L++SPTRELA QI+ L + G + ++ + S
Sbjct: 93 QPANKGFR----ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSK 148
Query: 304 GVDIVIGTPGRLIDLIEMNV--CHLSEVSFVVLDEADRMLD---MGFEEPVRFI-LSKIS 357
DI++ TP RLI L++ + L+ V ++V+DE+D++ + GF + + I L+ S
Sbjct: 149 KFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS 208
Query: 358 LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSED 394
+ MFSAT+ +V + + +D N + V +G+ +
Sbjct: 209 HKVRRAMFSATFAYDVEQWCKLNLD-NVISVSIGARN 244
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 9/147 (6%)
Query: 399 HDVMQIVEVLDDRSRDQRLLALLEKYHKSQR-NRVLVFALYQLEADRLENMLRRSGWKVV 457
H V+Q+ R++ +LL+ ++ + ++F + ++L + L G+
Sbjct: 12 HAVIQV--------REENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCD 63
Query: 458 AIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRI 517
IHG Q +R ++ FK G +VATDVAARG+DI ++ +VINY PL E YVHR
Sbjct: 64 KIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRT 123
Query: 518 GRTGRAGKKGVSHTFFTNHNKALAGEL 544
GRTGRAG KG + +F T K ++
Sbjct: 124 GRTGRAGNKGKAISFVTAFEKRFLADI 150
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 108/211 (51%), Gaps = 20/211 (9%)
Query: 180 KSFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVP 235
KSF E L ++L F+ PS IQ A P LL+ R+ I +++G+GKT AF +
Sbjct: 22 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 81
Query: 236 AMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKS-VCVYGGTSK 294
+ V + +P + L+P+RELA Q +V+ + GK + S + V K
Sbjct: 82 MLTRV--------NPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK 133
Query: 295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLD-MGFEEPVRFIL 353
QI A +++GTPG ++DL+ + L ++ VLDEAD MLD G + +
Sbjct: 134 NKQINA-----QVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVK 188
Query: 354 SKISLARQMVMFSATWPIEVHKLAEEYMDPN 384
+ Q+V+FSAT+ V + A++ + PN
Sbjct: 189 RFLPKDTQLVLFSATFADAVRQYAKKIV-PN 218
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 2/142 (1%)
Query: 409 DDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHER 468
DD LL L K + + R +VF + L N LR +G + G+ Q +R
Sbjct: 12 DDLEHKTALLVHLLK--QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKR 69
Query: 469 TKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGV 528
+++ EG ++VATDVAARG+DIPDV V N+ P + + Y+HRIGRT RAG+KG
Sbjct: 70 NEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGT 129
Query: 529 SHTFFTNHNKALAGELVNVLRE 550
+ + H+ L G++ + E
Sbjct: 130 AISLVEAHDHLLLGKVGRYIEE 151
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 6/136 (4%)
Query: 408 LDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHE 467
+D ++ + L E Y ++F + A+ L L+ G +V +HG E
Sbjct: 14 MDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQE 73
Query: 468 RTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTE------DYVHRIGRTG 521
R + + F+EG +++ T+V ARG+DIP V +V+NY P Y+HRIGRTG
Sbjct: 74 RDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTG 133
Query: 522 RAGKKGVSHTFFTNHN 537
R G+KGV+ +F + N
Sbjct: 134 RFGRKGVAISFVHDKN 149
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
Query: 420 LLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT 479
L E Y ++F + A+ L L+ G +V +HG ER + + F+EG
Sbjct: 28 LTELYGLXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR 87
Query: 480 CPLMVATDVAARGLDIPDVEVVINYSFPLTTE------DYVHRIGRTGRAGKKGVSHTFF 533
+++ T+V ARG+DIP V V+NY P Y+HRIGRTGR G+KGV+ +F
Sbjct: 88 SKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 147
Query: 534 TNHN 537
+ N
Sbjct: 148 HDKN 151
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
Query: 420 LLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT 479
L E Y ++F + A+ L L+ G +V +HG ER + + F+EG
Sbjct: 27 LTELYGVXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR 86
Query: 480 CPLMVATDVAARGLDIPDVEVVINYSFPLTTE------DYVHRIGRTGRAGKKGVSHTFF 533
+++ T+V ARG+DIP V V+NY P Y+HRIGRTGR G+KGV+ +F
Sbjct: 87 SKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 146
Query: 534 TNHN 537
+ N
Sbjct: 147 HDKN 150
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 116/239 (48%), Gaps = 22/239 (9%)
Query: 159 EDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLLN-- 214
++ QV V +D Y ++KSF E +L +L F PS IQ +A P +L
Sbjct: 72 DNTNQVEVLQRDPNSPLY-SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEP 130
Query: 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274
++ I +++G+GKT AF + + V K P CL LSPT ELA Q V+
Sbjct: 131 PQNLIAQSQSGTGKTAAFVLAMLSQVEPANK--------YPQCLCLSPTYELALQTGKVI 182
Query: 275 NDAGK--PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLI-EMNVCHLSEVSF 331
GK P + V G ++ Q + IVIGTPG ++D ++ ++
Sbjct: 183 EQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238
Query: 332 VVLDEADRML-DMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYM-DPNPVKV 388
VLDEAD M+ G ++ I + QM++FSAT+ V K A++ + DPN +K+
Sbjct: 239 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 80.5 bits (197), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 64/124 (51%)
Query: 415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474
Q++ L + + Q N+ ++F + L + + G+ IH K Q R +
Sbjct: 30 QKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHD 89
Query: 475 FKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534
F+ G C +V TD+ RG+DI V VVIN+ FP E Y+HRIGR+GR G G++ T
Sbjct: 90 FRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT 149
Query: 535 NHNK 538
++
Sbjct: 150 YDDR 153
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 116/239 (48%), Gaps = 22/239 (9%)
Query: 159 EDDGQVVVTGKDVKEAKYKALKSFTESKLPDDVLG--CCKNFKNPSPIQSHAWPFLLN-- 214
++ QV V +D Y ++KSF E +L +L F PS IQ +A P +L
Sbjct: 5 DNTNQVEVLQRDPNSPLY-SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEP 63
Query: 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274
++ I +++G+GKT AF + + V K P CL LSPT ELA Q V+
Sbjct: 64 PQNLIAQSQSGTGKTAAFVLAMLSQVEPANK--------YPQCLCLSPTYELALQTGKVI 115
Query: 275 NDAGK--PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLI-EMNVCHLSEVSF 331
GK P + V G ++ Q + IVIGTPG ++D ++ ++
Sbjct: 116 EQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 171
Query: 332 VVLDEADRML-DMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYM-DPNPVKV 388
VLDEAD M+ G ++ I + QM++FSAT+ V K A++ + DPN +K+
Sbjct: 172 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 230
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 79.3 bits (194), Expect = 5e-15, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 399 HDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVA 458
H + Q L D ++++L LL+ + N+V++F L +L + +A
Sbjct: 4 HGLQQYYVKLKDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIA 60
Query: 459 IHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIG 518
IH Q ER FK+ ++VAT++ RG+DI V + NY P ++ Y+HR+
Sbjct: 61 IHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVA 120
Query: 519 RTGRAGKKGVSHTFFTNHNKA 539
R GR G KG++ TF ++ N A
Sbjct: 121 RAGRFGTKGLAITFVSDENDA 141
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 94/196 (47%), Gaps = 12/196 (6%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
F++PS +Q P + G D + AK+G GKT F V A + L G+
Sbjct: 34 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVF-VLATLQQLEPVTGQVS-------V 85
Query: 258 LVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGV-DIVIGTPGRL 315
LV+ TRELA QI K VK +GG S + L+ IV+GTPGR+
Sbjct: 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 145
Query: 316 IDLIEMNVCHLSEVSFVVLDEADRMLD-MGFEEPVRFILSKISLARQMVMFSATWPIEVH 374
+ L +L + +LDE D+ML+ + V+ I +Q++MFSAT E+
Sbjct: 146 LALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR 205
Query: 375 KLAEEYMDPNPVKVVV 390
+ ++M +P+++ V
Sbjct: 206 PVCRKFMQ-DPMEIFV 220
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%)
Query: 456 VVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVH 515
++ HGK Q++RT + FK+ ++V TDV ARG+D P+V V+ P +Y+H
Sbjct: 63 ILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 122
Query: 516 RIGRTGRAGKKGVSHTFFTNHNKALAGEL 544
RIGRT R+GK+G S F EL
Sbjct: 123 RIGRTARSGKEGSSVLFICKDELPFVREL 151
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%)
Query: 456 VVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVH 515
++ HGK Q++RT + FK+ ++V TDV ARG+D P+V V+ P +Y+H
Sbjct: 63 ILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 122
Query: 516 RIGRTGRAGKKGVSHTFFTNHNKALAGEL 544
RIGRT R+GK+G S F EL
Sbjct: 123 RIGRTARSGKEGSSVLFICKDELPFVREL 151
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%)
Query: 456 VVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVH 515
++ HGK Q++RT + FK+ ++V TDV ARG+D P+V V+ P +Y+H
Sbjct: 63 ILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 122
Query: 516 RIGRTGRAGKKGVSHTFFTNHNKALAGEL 544
RIGRT R+GK+G S F EL
Sbjct: 123 RIGRTARSGKEGSSVLFICKDELPFVREL 151
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%)
Query: 416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLF 475
RL L + + + +R +VF + E + + L R G A+HG +Q ER + L F
Sbjct: 18 RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAF 77
Query: 476 KEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVH 515
++G ++VATDVAARGLDIP V++V++Y P E Y H
Sbjct: 78 RQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLF 475
RL L + + + +R +VF + E + + L R G A+HG +Q ER + + F
Sbjct: 15 RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAF 74
Query: 476 KEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVH 515
++G ++VATDVAARGLDIP V++V++Y P E Y H
Sbjct: 75 RQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 413 RDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSL 472
R + AL Y + ++F + A L + + G +V + G+ +R +
Sbjct: 18 RKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASII 77
Query: 473 SLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTT------EDYVHRIGRTGRAGKK 526
F++G +++ T+V ARG+D+ V +V+N+ P+ E Y+HRIGRTGR GKK
Sbjct: 78 QRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK 137
Query: 527 GVS 529
G++
Sbjct: 138 GLA 140
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 69/125 (55%)
Query: 420 LLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT 479
L + Y + ++F + + + L LR + V AI+ Q ER + F+ G+
Sbjct: 21 LTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80
Query: 480 CPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539
++++TD+ ARG+D+ V +VINY P E+Y+HRIGR GR G+KGV+ F TN +
Sbjct: 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 140
Query: 540 LAGEL 544
EL
Sbjct: 141 AMREL 145
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/346 (21%), Positives = 149/346 (43%), Gaps = 38/346 (10%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
++ P Q +L+GRD + + TG GK++ + +PA++ +N L
Sbjct: 23 YQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALL--------------LNGLT 68
Query: 258 LVLSPTRELA-DQIYDVLNDAGKPCGVKSVCVYGGTSKQPQI---TALRSG-VDIVIGTP 312
+V+SP L DQ+ D + GV + C+ +++ Q+ T R+G + ++ P
Sbjct: 69 VVVSPLISLXKDQV-----DQLQANGVAAACLNSTQTREQQLEVXTGCRTGQIRLLYIAP 123
Query: 313 GRL-IDLIEMNVCHLSEVSFVVLDEADRMLDMGFE-EPVRFILSKISLARQMVMFSATWP 370
RL +D ++ H + V + +DEA + G + P L ++ + F A
Sbjct: 124 ERLXLDNFLEHLAHWNPV-LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFXA--- 179
Query: 371 IEVHKLAEEYMDPNPVKVVVGSEDLA--ANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQ 428
+ A++ + V+++ ++ L ++ D I L ++ + L L +Y + Q
Sbjct: 180 --LTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYXLXEKFKP---LDQLXRYVQEQ 234
Query: 429 RNRV-LVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD 487
R + +++ + + + L+ G A H + R F+ ++VAT
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 294
Query: 488 VAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFF 533
G++ P+V V+++ P E Y GR GR G + F+
Sbjct: 295 AFGXGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAXLFY 340
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/350 (22%), Positives = 145/350 (41%), Gaps = 46/350 (13%)
Query: 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257
++ P Q +L+GRD + + TG GK++ + +PA++ +N L
Sbjct: 23 YQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL--------------LNGLT 68
Query: 258 LVLSPTRELA-DQIYDVLNDAGKPCGVKSVCVYGGTSKQPQI---TALRSG-VDIVIGTP 312
+V+SP L DQ+ D + GV + C+ +++ Q+ T R+G + ++ P
Sbjct: 69 VVVSPLISLMKDQV-----DQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123
Query: 313 GRL-IDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPI 371
RL +D ++ H + V V DEA + G + F +L + F +
Sbjct: 124 ERLMLDNFLEHLAHWNPVLLAV-DEAHCISQWGHD----FRPEYAALGQLRQRFPTLPFM 178
Query: 372 EVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLA-------LLEKY 424
+ A++ + V++ L N ++QI DR + +L L +Y
Sbjct: 179 ALTATADDTTRQDIVRL------LGLNDPLIQISSF--DRPNIRYMLMEKFKPLDQLMRY 230
Query: 425 HKSQRNRV-LVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLM 483
+ QR + +++ + + + L+ G A H + R F+ ++
Sbjct: 231 VQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIV 290
Query: 484 VATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFF 533
VAT G++ P+V V+++ P E Y GR GR G + F+
Sbjct: 291 VATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 8/123 (6%)
Query: 408 LDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKA--- 464
LD D+ + E+ + Q ++++VF Y+ A ++ N L + G K G+ +
Sbjct: 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399
Query: 465 -----QHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGR 519
Q E+ L F G ++VAT V GLD+P+V++V+ Y + + R GR
Sbjct: 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGR 459
Query: 520 TGR 522
TGR
Sbjct: 460 TGR 462
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 143/329 (43%), Gaps = 63/329 (19%)
Query: 224 TGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGV 283
GSGKT+ A + +L N + + PT LA Q Y ++ +
Sbjct: 398 VGSGKTVV----AQLAILDNYEAGFQ-------TAFMVPTSILAIQHYRRTVESFSKFNI 446
Query: 284 KSVCVYGGTS---KQPQITALRSG-VDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADR 339
+ G T+ K+ + LR+G +D+VIGT LI+ +V H + V++DE R
Sbjct: 447 HVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHA----LIQEDV-HFKNLGLVIIDEQHR 501
Query: 340 MLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANH 399
G ++ +++K + +VM SAT P P + + +
Sbjct: 502 F---GVKQR-EALMNKGKMVDTLVM-SAT--------------PIPRSMALA---FYGDL 539
Query: 400 DVMQIVEVLDDRSRDQRLLALLEKY---HKSQRNRVL----VFALYQL--EADRL----- 445
DV I E+ R Q +L +++ ++ R V+ F +Y L E+D+L
Sbjct: 540 DVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSA 599
Query: 446 ----ENMLRR--SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVE 499
E + + +K+ +HG+ +Q E+ + + F EG ++V+T V G+D+P
Sbjct: 600 VEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRAN 659
Query: 500 VVINYSFPLTTEDYVHRI-GRTGRAGKKG 527
V++ + +H++ GR GR G++
Sbjct: 660 VMVIENPERFGLAQLHQLRGRVGRGGQEA 688
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 8/118 (6%)
Query: 408 LDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHE 467
+ +++ ++L +LE++ K +++++F + R+ + + + AI + ++ E
Sbjct: 331 FNSKNKIRKLREILERHRK---DKIIIFTRHNELVYRISKV-----FLIPAITHRTSREE 382
Query: 468 RTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGK 525
R + L F+ G +V++ V G+D+PD V + S + +Y+ R+GR R K
Sbjct: 383 REEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSK 440
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 1/149 (0%)
Query: 433 LVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARG 492
+++ Q +++++ L+ G A H ++T + ++VAT G
Sbjct: 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMG 330
Query: 493 LDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREAR 552
+D PDV VI++S + E+Y GR GR K ++ + +V V+
Sbjct: 331 IDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV-VMENVG 389
Query: 553 QVVPDALLKFGTHVKKKESKLYGAHFREI 581
Q ++ + ++ K L HF E+
Sbjct: 390 QQKLYEMVSYCQNISKCRRVLMAQHFDEV 418
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 8/118 (6%)
Query: 408 LDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHE 467
+ +++ ++L +LE++ K +++++F + R+ + + + AI + ++ E
Sbjct: 96 FNSKNKIRKLREILERHRK---DKIIIFTRHNELVYRISKV-----FLIPAITHRTSREE 147
Query: 468 RTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGK 525
R + L F+ G +V++ V G+D+PD V + S + +Y+ R+GR R K
Sbjct: 148 REEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSK 205
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 422 EKYHKSQRN-RVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTC 480
E + + +RN R LV L + A+ L + L+ +G KV +H + ER + + + G
Sbjct: 462 EIHERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKY 521
Query: 481 PLMVATDVAARGLDIPDVEVVI-----NYSFPLTTEDYVHRIGRTGR 522
++V ++ GLDIP+V +V F + + IGR R
Sbjct: 522 DVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 568
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 20/204 (9%)
Query: 186 KLPDDVLGCCKN--FKNPSPIQSHAWP-FLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLS 242
KLP +V+ K K +P Q+ A LL G + + TGSGKT+ + + +L
Sbjct: 14 KLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK 73
Query: 243 NRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALR 302
N GKA+ ++P R L ++ Y D + G K G A
Sbjct: 74 N-GGKAI---------YVTPLRALTNEKYLTFKD-WELIGFKVAMTSGDYDTD---DAWL 119
Query: 303 SGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQM 362
DI+I T +L L L+EV++ VLDE + D PV ++ + R +
Sbjct: 120 KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE-RGPVVESVTIRAKRRNL 178
Query: 363 VMFSATWPIEVHKLAEEYMDPNPV 386
+ SAT I +K +++ PV
Sbjct: 179 LALSAT--ISNYKQIAKWLGAEPV 200
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 27/147 (18%)
Query: 171 VKEAKYKALKSFTESKLPDDVLGCCKNFKNPSPIQSHAWPFLLNGRD--FIGIAKTGSGK 228
V + A +S + K P F NP IQ+ + + N D F+G A TGSGK
Sbjct: 908 VSALRNSAFESLYQDKFP---------FFNP--IQTQVFNTVYNSDDNVFVG-APTGSGK 955
Query: 229 TIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIY-DVLNDAGKPCGVKSVC 287
TI + +L + +G+ C+ ++P LA+Q+Y D K V
Sbjct: 956 TICAEFAILRMLLQSSEGR---------CVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006
Query: 288 VYGGTSKQPQITALRSGVDIVIGTPGR 314
+ G TS + L G +I+I TP +
Sbjct: 1007 LTGETST--DLKLLGKG-NIIISTPEK 1030
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 27/147 (18%)
Query: 171 VKEAKYKALKSFTESKLPDDVLGCCKNFKNPSPIQSHAWPFLLNGRD--FIGIAKTGSGK 228
V + A +S + K P F NP IQ+ + + N D F+G A TGSGK
Sbjct: 908 VSALRNSAFESLYQDKFP---------FFNP--IQTQVFNTVYNSDDNVFVG-APTGSGK 955
Query: 229 TIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIY-DVLNDAGKPCGVKSVC 287
TI + +L + +G+ C+ ++P LA+Q+Y D K V
Sbjct: 956 TICAEFAILRMLLQSSEGR---------CVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006
Query: 288 VYGGTSKQPQITALRSGVDIVIGTPGR 314
+ G TS + L G +I+I TP +
Sbjct: 1007 LTGETST--DLKLLGKG-NIIISTPEK 1030
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 426 KSQRN-RVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMV 484
+ +RN R LV L + A+ L + L+ +G KV +H + ER + + + G ++V
Sbjct: 441 RVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLV 500
Query: 485 ATDVAARGLDIPDVEVVI-----NYSFPLTTEDYVHRIGRTGR 522
++ GLDIP+V +V F + + IGR R
Sbjct: 501 GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 426 KSQRN-RVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMV 484
+ +RN R LV L + A+ L + L+ +G KV +H + ER + + + G ++V
Sbjct: 440 RVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLV 499
Query: 485 ATDVAARGLDIPDVEVVI-----NYSFPLTTEDYVHRIGRTGR 522
++ GLDIP+V +V F + + IGR R
Sbjct: 500 GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 426 KSQRN-RVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMV 484
+ +RN R LV L + A+ L + L+ +G KV +H + ER + + + G ++V
Sbjct: 441 RVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLV 500
Query: 485 ATDVAARGLDIPDVEVVI-----NYSFPLTTEDYVHRIGRTGR 522
++ GLDIP+V +V F + + IGR R
Sbjct: 501 GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 426 KSQRN-RVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMV 484
+ +RN R LV L + A+ L + L+ +G KV +H + ER + + + G ++V
Sbjct: 441 RVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLV 500
Query: 485 ATDVAARGLDIPDVEVVI-----NYSFPLTTEDYVHRIGRTGR 522
++ GLDIP+V +V F + + IGR R
Sbjct: 501 GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 464 AQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINY 504
Q+E+ + +S F+ G L++AT VA GLDI + +VI Y
Sbjct: 199 TQNEQREVISKFRTGKINLLIATTVAEEGLDIKECNIVIRY 239
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 464 AQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRA 523
Q+E+ + +S F+ G L++AT VA GLDI + +VI Y +T E + + GRA
Sbjct: 449 TQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGL-VTNE--IAMVQARGRA 505
Query: 524 GKKGVSHTFFTNHNKA-LAGELVNVLRE 550
++ + + E VN RE
Sbjct: 506 RADESTYVLVAHSGSGVIERETVNDFRE 533
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 428 QRN-RVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486
+RN RVLV L + ++ L + L+ G KV +H + ER + + + G ++V
Sbjct: 449 ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI 508
Query: 487 DVAARGLDIPDVEVVI-----NYSFPLTTEDYVHRIGRTGR 522
++ GLDIP+V +V F + + IGR R
Sbjct: 509 NLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 549
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 428 QRN-RVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486
+RN RVLV L + ++ L + L+ G KV +H + ER + + + G ++V
Sbjct: 443 ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI 502
Query: 487 DVAARGLDIPDVEVVI-----NYSFPLTTEDYVHRIGRTGR 522
++ GLDIP+V +V F + + IGR R
Sbjct: 503 NLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 119/294 (40%), Gaps = 37/294 (12%)
Query: 259 VLSPTRELADQIYDVLND--AGKPCGVKSVCVYGGTSKQPQITA--LRSGVDIVIGTPGR 314
VL PT LA Q YD D A P ++ + + +Q QI A +DI+IGT
Sbjct: 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH-- 714
Query: 315 LIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS-LARQMVMFSATWPIEV 373
L++ +V ++ +++DE R + +E ++ + + + L T + +
Sbjct: 715 --KLLQSDV-KFKDLGLLIVDEEHR-FGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 770
Query: 374 HKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVL 433
+ + + P + + +D M + E + L E Q
Sbjct: 771 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAI-----------LREILRGGQ----- 814
Query: 434 VFALY------QLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD 487
V+ LY Q A+RL ++ + ++ HG+ + E + ++ F ++V T
Sbjct: 815 VYYLYNDVENIQKAAERLAELVPEA--RIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 872
Query: 488 VAARGLDIPDVEVVINYSFPLTTEDYVHRI-GRTGRAGKKGVSHTFFTNHNKAL 540
+ G+DIP +I +H++ GR GR+ + + T H KA+
Sbjct: 873 IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA-WLLTPHPKAM 925
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 18/158 (11%)
Query: 420 LLEKYHKSQRNRVLVFALYQLEADRLENML----RRSGWKVVAIHGKKAQHERTKS---- 471
L E+YH + ++F + D L+N + + S K + G+ ++ T
Sbjct: 380 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 439
Query: 472 ----LSLFK-EGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKK 526
L FK G +++AT VA G+DI +VI Y + + + I GR +
Sbjct: 440 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRAR 496
Query: 527 GVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGT 564
G T++ + E +N+ +E +++ D++L+ T
Sbjct: 497 GSKCFLLTSNAGVIEKEQINMYKE--KMMNDSILRLQT 532
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 18/158 (11%)
Query: 420 LLEKYHKSQRNRVLVFALYQLEADRLENML----RRSGWKVVAIHGKKAQHERTKS---- 471
L E+YH + ++F + D L+N + + S K + G+ ++ T
Sbjct: 389 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 448
Query: 472 ----LSLFK-EGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKK 526
L FK G +++AT VA G+DI +VI Y + + + I GR +
Sbjct: 449 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRAR 505
Query: 527 GVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGT 564
G T++ + E +N+ +E +++ D++L+ T
Sbjct: 506 GSKCFLLTSNAGVIEKEQINMYKE--KMMNDSILRLQT 541
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 18/158 (11%)
Query: 420 LLEKYHKSQRNRVLVFALYQLEADRLENML----RRSGWKVVAIHGKKAQHERTKS---- 471
L E+YH + ++F + D L+N + + S K + G+ ++ T
Sbjct: 388 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 447
Query: 472 ----LSLFK-EGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKK 526
L FK G +++AT VA G+DI +VI Y + + + I GR +
Sbjct: 448 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRAR 504
Query: 527 GVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGT 564
G T++ + E +N+ +E +++ D++L+ T
Sbjct: 505 GSKCFLLTSNAGVIEKEQINMYKE--KMMNDSILRLQT 540
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
Query: 474 LFKEGTCPLMVATDVAARGLDIPDVEVVI--------NYSFPLTTEDYVHRIGRTGRAGK 525
LF +G ++ AT+ A GL++P V+ N LT ++ GR GR G
Sbjct: 420 LFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGL 479
Query: 526 KGVSHTFFTNHNKALAGELVNVLREARQVVPDAL 559
+N L+ + +E VP L
Sbjct: 480 DSTGTVIVMAYNSPLS---IATFKEVTMGVPTRL 510
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 475 FKEGTCPLMVATDVAARGLDIPDVEVVIN-------YSFPLTTEDYVHRIGRTGRAG 524
F+ G ++VAT A G+++P V++ YS + +Y GR GR G
Sbjct: 318 FRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPG 374
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 23/190 (12%)
Query: 371 IEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDD--RSRDQRLLALLEKYHKSQ 428
+E H L ++ + P + + ++ N + ++V +LDD R Q L K
Sbjct: 586 LEQH-LTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK----- 639
Query: 429 RNRVLVFALYQ-LEADRLENMLRRSGWKVVAIHGKKAQH------ERTKSLSLFKEGT-C 480
R LV AL + +E + + N ++ V+ G++ Q + L FK
Sbjct: 640 -TRALVSALKKCMEENPILNYIKPG---VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDN 695
Query: 481 PLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKAL 540
L++AT VA G+DI +V+ Y + + GR AG K + T+ + +
Sbjct: 696 RLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCI---LVTSKTEVV 752
Query: 541 AGELVNVLRE 550
E N +E
Sbjct: 753 ENEKCNRYKE 762
>pdb|3RC8|A Chain A, Human Mitochondrial Helicase Suv3 In Complex With Short
Rna Fragment
Length = 677
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 20/113 (17%)
Query: 480 CPLMVATDVAARGLDIPDVEVVINYSF--------------PLTTEDYVHRIGRTGRAGK 525
C ++VATD GL++ + +I YS P+TT + GR GR
Sbjct: 373 CKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGR--- 428
Query: 526 KGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVKKKESKLYGAHF 578
S F + E +++L+E + D + G H ++ +++ H
Sbjct: 429 --FSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHL 479
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 482 LMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALA 541
L++AT VA G+DI +V+ Y + + GR AG K + T+ + +
Sbjct: 697 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCI---LVTSKTEVVE 753
Query: 542 GELVNVLRE 550
E N +E
Sbjct: 754 NEKCNRYKE 762
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 482 LMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALA 541
L++AT VA G+DI +V+ Y + + GR AG K + T+ + +
Sbjct: 456 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCI---LVTSKTEVVE 512
Query: 542 GELVNVLRE 550
E N +E
Sbjct: 513 NEKCNRYKE 521
>pdb|4ERN|A Chain A, Crystal Structure Of The C-terminal Domain Of Human
Xpb/ercc-3 Excision Repair Protein At 1.80 A
Length = 289
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 15/123 (12%)
Query: 416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVV----AIHGKKAQHERTKS 471
R L K+H+ + ++++VFA +N+ + + I+G +Q ER +
Sbjct: 49 RACQFLIKFHERRNDKIIVFA---------DNVFALKEYAIRLNKPYIYGPTSQGERMQI 99
Query: 472 LSLFKEG-TCPLMVATDVAARGLDIPDVEVVINY-SFPLTTEDYVHRIGRTGRAGKKGVS 529
L FK + + V D+P+ V+I S + R+GR RA K V+
Sbjct: 100 LQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVA 159
Query: 530 HTF 532
+
Sbjct: 160 EEY 162
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 44/211 (20%)
Query: 340 MLDMGFE-------EPVRF--ILSKISLARQMVMFSAT-WPIEVH---KLAEEYMDP--- 383
++D GF P+RF L ++S Q+V SAT P E+ ++ E+ + P
Sbjct: 355 LVDYGFRLPSALDNRPLRFEEFLERVS---QVVFVSATPGPFELAHSGRVVEQIIRPTGL 411
Query: 384 -NPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEA 442
+P+ V +E+ ++ ++E + +R+ ++ R LV L A
Sbjct: 412 LDPLVRVKPTEN-----QILDLMEGIRERA--------------ARGERTLVTVLTVRMA 452
Query: 443 DRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVI 502
+ L + L G + +H + +R + + G +V ++ GLDIP+V +V
Sbjct: 453 EELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVA 512
Query: 503 -----NYSFPLTTEDYVHRIGRTGRAGKKGV 528
F + + IGR R + V
Sbjct: 513 ILDADKEGFLRSERSLIQTIGRAARNARGEV 543
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 44/211 (20%)
Query: 340 MLDMGFE-------EPVRF--ILSKISLARQMVMFSAT-WPIEVH---KLAEEYMDP--- 383
++D GF P+RF L ++S Q+V SAT P E+ ++ E+ + P
Sbjct: 356 LVDYGFRLPSALDNRPLRFEEFLERVS---QVVFVSATPGPFELAHSGRVVEQIIRPTGL 412
Query: 384 -NPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEA 442
+P+ V +E+ ++ ++E + +R+ ++ R LV L A
Sbjct: 413 LDPLVRVKPTEN-----QILDLMEGIRERA--------------ARGERTLVTVLTVRMA 453
Query: 443 DRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVI 502
+ L + L G + +H + +R + + G +V ++ GLDIP+V +V
Sbjct: 454 EELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVA 513
Query: 503 -----NYSFPLTTEDYVHRIGRTGRAGKKGV 528
F + + IGR R + V
Sbjct: 514 ILDADKEGFLRSERSLIQTIGRAARNARGEV 544
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 482 LMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALA 541
+++AT VA G+DI + +VI Y + + + I GR + T+ +
Sbjct: 455 ILIATSVADEGIDIAECNLVILYEY---VGNVIKXIQTRGRGRARDSKCFLLTSSADVIE 511
Query: 542 GELVNVLREARQVVPDALLKFGT 564
E N ++E ++ +++L+ T
Sbjct: 512 KEKANXIKE--KIXNESILRLQT 532
>pdb|3UNG|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
pdb|3UR3|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
Length = 693
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 18/106 (16%)
Query: 395 LAANHDVMQIVEVLDDRSRD-QRLLALLEKYHKSQ-RNRVLVFALY----------QLEA 442
L+ D+ Q+ E D ++ L EK S+ R+ ++ L ++
Sbjct: 197 LSEKEDIYQVTENAGLSDEDVKKWLKFAEKKENSRVLERIAIYPLLVKILDSLGERKVTE 256
Query: 443 DRLENMLRRSGWKV------VAIHGKKAQHERTKSLSLFKEGTCPL 482
+R E + GWK +AI G H+ KSL L +E CP+
Sbjct: 257 ERFEKSEQLKGWKCHVCGENLAIFGDMYDHDNLKSLWLDEEPLCPM 302
>pdb|4DOZ|A Chain A, Crystal Structure Of Pyrococcus Furiosus Cmr2 (Cas10)
Length = 686
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 18/106 (16%)
Query: 395 LAANHDVMQIVEVLDDRSRD-QRLLALLEKYHKSQ-RNRVLVFALY----------QLEA 442
L+ D+ Q+ E D ++ L EK S+ R+ ++ L ++
Sbjct: 182 LSEKEDIYQVTENAGLSDEDVKKWLKFAEKKENSRVLERIAIYPLLVKILDSLGERKVTE 241
Query: 443 DRLENMLRRSGWKV------VAIHGKKAQHERTKSLSLFKEGTCPL 482
+R E + GWK +AI G H+ KSL L +E CP+
Sbjct: 242 ERFEKSEQLKGWKCHVCGENLAIFGDMYDHDNLKSLWLDEEPLCPM 287
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 14/86 (16%)
Query: 368 TWP-IEVHKLAEEYMDPNPVKVV--VGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKY 424
TWP I+ +L E P+ +K+V G +LA V+V+D ++ E Y
Sbjct: 312 TWPLIKTFELCSE---PDKIKIVKNYGKNNLAC-------VKVIDSLYEQYKIRKHYESY 361
Query: 425 HKSQRNRVLVFALYQLEADRLENMLR 450
K+Q+ ++L A+ +L + +E +L+
Sbjct: 362 EKAQKAKILS-AINELHHEGIEYVLK 386
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 14/86 (16%)
Query: 368 TWP-IEVHKLAEEYMDPNPVKVV--VGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKY 424
TWP I+ +L E P+ +K+V G +LA V+V+D ++ E Y
Sbjct: 311 TWPLIKTFELCSE---PDKIKIVKNYGKNNLAC-------VKVIDSLYEQYKIRKHYESY 360
Query: 425 HKSQRNRVLVFALYQLEADRLENMLR 450
K+Q+ ++L A+ +L + +E +L+
Sbjct: 361 EKAQKAKILS-AINELHHEGIEYVLK 385
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,551,835
Number of Sequences: 62578
Number of extensions: 584840
Number of successful extensions: 1652
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1403
Number of HSP's gapped (non-prelim): 137
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)