Query 039378
Match_columns 600
No_of_seqs 438 out of 3422
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 09:05:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 2.3E-76 5.1E-81 597.8 39.3 387 181-570 92-482 (519)
2 KOG0330 ATP-dependent RNA heli 100.0 5.6E-74 1.2E-78 543.1 31.7 365 177-554 58-425 (476)
3 KOG0338 ATP-dependent RNA heli 100.0 6.3E-72 1.4E-76 544.8 30.5 360 179-547 180-544 (691)
4 KOG0336 ATP-dependent RNA heli 100.0 5.4E-70 1.2E-74 517.8 28.7 395 171-571 210-607 (629)
5 KOG0333 U5 snRNP-like RNA heli 100.0 4E-69 8.6E-74 527.4 35.2 384 175-563 240-652 (673)
6 PTZ00110 helicase; Provisional 100.0 6E-68 1.3E-72 567.4 44.3 401 176-580 126-529 (545)
7 COG0513 SrmB Superfamily II DN 100.0 3.5E-66 7.6E-71 548.3 39.4 370 180-559 29-407 (513)
8 KOG0335 ATP-dependent RNA heli 100.0 4E-66 8.7E-71 514.0 32.4 387 176-563 70-471 (482)
9 KOG0339 ATP-dependent RNA heli 100.0 2.1E-65 4.5E-70 498.5 33.7 384 174-564 217-603 (731)
10 KOG0328 Predicted ATP-dependen 100.0 1.3E-65 2.9E-70 466.0 29.3 371 176-559 23-396 (400)
11 KOG0347 RNA helicase [RNA proc 100.0 5.4E-67 1.2E-71 514.7 21.5 371 177-552 178-586 (731)
12 PLN00206 DEAD-box ATP-dependen 100.0 2.9E-64 6.3E-69 537.8 43.9 383 176-563 117-502 (518)
13 KOG0340 ATP-dependent RNA heli 100.0 2.2E-65 4.8E-70 479.1 28.8 368 177-552 4-377 (442)
14 KOG0341 DEAD-box protein abstr 100.0 1E-66 2.3E-71 492.2 18.9 387 175-567 165-560 (610)
15 KOG0342 ATP-dependent RNA heli 100.0 2E-64 4.3E-69 492.5 31.0 363 178-546 80-447 (543)
16 KOG0326 ATP-dependent RNA heli 100.0 1.8E-64 4E-69 465.9 19.4 367 180-560 85-453 (459)
17 PRK04837 ATP-dependent RNA hel 100.0 5.8E-62 1.3E-66 511.2 39.9 366 180-551 8-377 (423)
18 KOG0345 ATP-dependent RNA heli 100.0 4E-62 8.7E-67 472.9 33.1 354 181-541 5-369 (567)
19 KOG0343 RNA Helicase [RNA proc 100.0 4.4E-62 9.5E-67 480.1 31.6 358 178-544 67-431 (758)
20 PRK11776 ATP-dependent RNA hel 100.0 1.3E-60 2.9E-65 506.3 40.3 356 180-549 4-362 (460)
21 KOG0348 ATP-dependent RNA heli 100.0 1.7E-61 3.7E-66 474.5 30.5 366 178-546 134-564 (708)
22 PRK10590 ATP-dependent RNA hel 100.0 2.1E-60 4.6E-65 502.3 40.3 363 181-550 2-366 (456)
23 PRK11634 ATP-dependent RNA hel 100.0 5.4E-60 1.2E-64 509.9 40.2 357 179-548 5-364 (629)
24 PRK04537 ATP-dependent RNA hel 100.0 6E-60 1.3E-64 507.1 40.2 365 180-550 9-378 (572)
25 KOG0346 RNA helicase [RNA proc 100.0 2.5E-60 5.5E-65 456.3 28.9 366 180-550 19-424 (569)
26 PRK11192 ATP-dependent RNA hel 100.0 6.3E-59 1.4E-63 490.6 40.6 361 181-550 2-366 (434)
27 KOG0334 RNA helicase [RNA proc 100.0 6.5E-60 1.4E-64 500.9 30.4 385 175-566 360-750 (997)
28 PRK01297 ATP-dependent RNA hel 100.0 2E-57 4.4E-62 483.1 42.3 377 179-561 86-469 (475)
29 PTZ00424 helicase 45; Provisio 100.0 4.6E-56 1E-60 465.7 38.0 366 178-556 26-394 (401)
30 KOG0332 ATP-dependent RNA heli 100.0 2.6E-56 5.7E-61 420.5 29.2 372 175-562 85-471 (477)
31 KOG0350 DEAD-box ATP-dependent 100.0 3.9E-56 8.5E-61 434.0 31.3 344 197-550 156-554 (620)
32 KOG0344 ATP-dependent RNA heli 100.0 5E-55 1.1E-59 436.9 27.6 382 176-564 128-523 (593)
33 KOG0337 ATP-dependent RNA heli 100.0 4.2E-55 9.1E-60 418.4 20.9 360 179-549 20-381 (529)
34 KOG0327 Translation initiation 100.0 9.5E-54 2.1E-58 407.3 25.3 369 177-560 23-394 (397)
35 TIGR03817 DECH_helic helicase/ 100.0 1.6E-50 3.6E-55 444.8 36.4 346 186-549 20-401 (742)
36 KOG4284 DEAD box protein [Tran 100.0 1.4E-51 3E-56 412.1 24.9 347 178-538 23-381 (980)
37 PLN03137 ATP-dependent DNA hel 100.0 4.4E-50 9.6E-55 437.0 36.3 324 197-545 457-796 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 2.6E-49 5.7E-54 419.1 36.1 328 193-546 4-343 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 7.1E-48 1.5E-52 418.4 36.4 330 188-545 13-352 (607)
40 TIGR01389 recQ ATP-dependent D 100.0 2E-46 4.3E-51 408.7 36.4 327 192-545 5-340 (591)
41 PRK13767 ATP-dependent helicas 100.0 1.7E-45 3.7E-50 413.2 34.9 344 187-536 18-398 (876)
42 KOG0329 ATP-dependent RNA heli 100.0 1.2E-47 2.5E-52 344.1 13.8 332 180-558 42-378 (387)
43 PRK02362 ski2-like helicase; P 100.0 1.4E-45 2.9E-50 410.8 31.4 337 181-537 2-398 (737)
44 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.8E-44 3.9E-49 388.4 32.7 317 195-535 11-390 (844)
45 PRK00254 ski2-like helicase; P 100.0 4.6E-44 9.9E-49 397.5 33.8 338 181-537 2-389 (720)
46 TIGR00580 mfd transcription-re 100.0 5.7E-43 1.2E-47 388.1 39.5 317 188-536 437-770 (926)
47 COG0514 RecQ Superfamily II DN 100.0 1.3E-42 2.8E-47 359.1 31.3 332 191-547 8-348 (590)
48 PRK10689 transcription-repair 100.0 1.5E-41 3.3E-46 384.7 40.2 309 197-536 598-919 (1147)
49 PRK01172 ski2-like helicase; P 100.0 2.8E-42 6E-47 381.8 30.9 334 181-536 2-378 (674)
50 PRK10917 ATP-dependent DNA hel 100.0 6.2E-41 1.3E-45 367.9 36.9 309 197-535 259-588 (681)
51 COG1201 Lhr Lhr-like helicases 100.0 2.3E-41 5E-46 362.3 31.3 338 187-535 8-361 (814)
52 PHA02653 RNA helicase NPH-II; 100.0 8.5E-41 1.8E-45 358.7 32.6 314 203-539 167-517 (675)
53 TIGR00643 recG ATP-dependent D 100.0 7E-40 1.5E-44 357.4 38.7 309 197-534 233-564 (630)
54 PRK09401 reverse gyrase; Revie 100.0 6.2E-40 1.3E-44 372.4 36.2 297 197-523 78-431 (1176)
55 PRK09751 putative ATP-dependen 100.0 3.6E-40 7.9E-45 374.7 32.6 304 220-530 1-379 (1490)
56 TIGR01970 DEAH_box_HrpB ATP-de 100.0 7.3E-40 1.6E-44 359.8 31.9 307 206-539 8-339 (819)
57 KOG0349 Putative DEAD-box RNA 100.0 2E-40 4.3E-45 318.1 19.7 281 254-536 286-615 (725)
58 PRK12898 secA preprotein trans 100.0 3.8E-39 8.1E-44 340.2 30.7 319 200-540 103-590 (656)
59 PRK11664 ATP-dependent RNA hel 100.0 3.9E-39 8.5E-44 355.1 28.8 307 206-539 11-342 (812)
60 COG1111 MPH1 ERCC4-like helica 100.0 4.9E-38 1.1E-42 310.3 32.9 330 197-539 12-484 (542)
61 PHA02558 uvsW UvsW helicase; P 100.0 2.1E-38 4.5E-43 337.5 30.7 309 198-533 112-449 (501)
62 PRK14701 reverse gyrase; Provi 100.0 1.1E-38 2.5E-43 369.1 30.9 320 197-544 77-464 (1638)
63 PRK09200 preprotein translocas 100.0 3.4E-38 7.5E-43 340.0 30.1 322 197-540 76-545 (790)
64 TIGR01054 rgy reverse gyrase. 100.0 1.5E-37 3.3E-42 353.5 34.1 281 198-507 76-408 (1171)
65 TIGR01587 cas3_core CRISPR-ass 100.0 6.9E-38 1.5E-42 322.8 25.9 300 217-537 1-337 (358)
66 TIGR03714 secA2 accessory Sec 100.0 4.6E-37 1E-41 328.0 29.6 330 200-550 70-555 (762)
67 TIGR00963 secA preprotein tran 100.0 1.4E-36 3E-41 322.1 32.1 319 200-540 56-521 (745)
68 COG1202 Superfamily II helicas 100.0 1.9E-37 4.1E-42 307.8 23.4 338 180-536 194-553 (830)
69 COG1204 Superfamily II helicas 100.0 6.6E-37 1.4E-41 333.0 28.1 333 187-536 16-408 (766)
70 PRK13766 Hef nuclease; Provisi 100.0 3.7E-35 8.1E-40 331.3 38.7 328 197-538 12-481 (773)
71 KOG0352 ATP-dependent DNA heli 100.0 1E-36 2.3E-41 292.3 19.1 325 197-546 16-372 (641)
72 KOG0351 ATP-dependent DNA heli 100.0 8E-36 1.7E-40 326.3 28.1 323 197-546 261-602 (941)
73 TIGR03158 cas3_cyano CRISPR-as 100.0 1.4E-34 3E-39 294.8 30.7 293 204-521 1-357 (357)
74 KOG0952 DNA/RNA helicase MER3/ 100.0 4.4E-35 9.5E-40 309.2 27.2 339 194-541 104-496 (1230)
75 PRK11131 ATP-dependent RNA hel 100.0 1.6E-34 3.4E-39 323.3 29.8 301 206-539 80-414 (1294)
76 COG1205 Distinct helicase fami 100.0 2.4E-34 5.3E-39 317.5 30.4 323 197-534 67-420 (851)
77 TIGR00603 rad25 DNA repair hel 100.0 2.7E-34 5.8E-39 306.9 28.6 321 199-551 254-624 (732)
78 KOG0354 DEAD-box like helicase 100.0 8.9E-34 1.9E-38 296.6 29.0 326 197-536 59-529 (746)
79 KOG0353 ATP-dependent DNA heli 100.0 4.7E-34 1E-38 270.2 20.8 366 190-579 84-509 (695)
80 PRK04914 ATP-dependent helicas 100.0 7.3E-33 1.6E-37 306.2 33.6 335 200-550 152-617 (956)
81 TIGR01967 DEAH_box_HrpA ATP-de 100.0 7.1E-33 1.5E-37 311.3 29.1 304 207-539 74-407 (1283)
82 PRK13104 secA preprotein trans 100.0 1.2E-30 2.7E-35 280.6 30.7 330 200-551 82-606 (896)
83 PLN03142 Probable chromatin-re 100.0 2.5E-31 5.3E-36 294.9 24.1 320 200-536 169-599 (1033)
84 PRK05580 primosome assembly pr 100.0 1.1E-29 2.4E-34 277.8 35.1 314 200-539 144-552 (679)
85 KOG0951 RNA helicase BRR2, DEA 100.0 2.4E-30 5.1E-35 276.7 27.5 347 185-539 294-705 (1674)
86 PRK09694 helicase Cas3; Provis 100.0 2.3E-29 4.9E-34 276.9 33.9 314 198-525 284-664 (878)
87 PRK12904 preprotein translocas 100.0 7E-30 1.5E-34 274.8 28.8 319 200-540 81-577 (830)
88 KOG0385 Chromatin remodeling c 100.0 3.2E-30 6.9E-35 264.3 22.1 322 199-537 166-600 (971)
89 COG1061 SSL2 DNA or RNA helica 100.0 8.9E-30 1.9E-34 265.8 25.9 296 198-522 34-375 (442)
90 KOG0947 Cytoplasmic exosomal R 100.0 2.2E-29 4.8E-34 263.3 24.4 313 200-536 297-723 (1248)
91 cd00268 DEADc DEAD-box helicas 100.0 4.7E-29 1E-33 236.0 23.4 200 182-388 1-202 (203)
92 PRK12906 secA preprotein trans 100.0 3E-29 6.6E-34 268.8 24.7 319 200-540 80-557 (796)
93 COG1200 RecG RecG-like helicas 100.0 2.2E-28 4.7E-33 252.6 29.3 322 200-551 262-606 (677)
94 PRK12899 secA preprotein trans 100.0 2.7E-28 5.8E-33 262.0 30.7 132 197-341 86-228 (970)
95 KOG0387 Transcription-coupled 100.0 1.7E-28 3.6E-33 253.1 26.8 321 199-537 204-659 (923)
96 KOG0926 DEAH-box RNA helicase 100.0 1.4E-29 3.1E-34 259.9 16.0 310 207-536 263-704 (1172)
97 KOG0948 Nuclear exosomal RNA h 100.0 3.4E-29 7.5E-34 255.7 18.6 311 200-536 129-539 (1041)
98 TIGR00595 priA primosomal prot 100.0 1.4E-27 3.1E-32 252.1 31.5 291 219-535 1-380 (505)
99 COG1197 Mfd Transcription-repa 100.0 9.2E-27 2E-31 253.6 33.8 308 200-537 594-914 (1139)
100 PRK13107 preprotein translocas 100.0 2.3E-27 5.1E-32 254.5 27.1 330 200-551 82-610 (908)
101 KOG0922 DEAH-box RNA helicase 100.0 1.5E-27 3.3E-32 243.8 23.8 306 206-539 57-393 (674)
102 COG1643 HrpA HrpA-like helicas 100.0 2.4E-27 5.1E-32 256.9 25.2 309 205-539 55-390 (845)
103 COG4098 comFA Superfamily II D 100.0 7.4E-26 1.6E-30 212.8 31.5 308 200-541 97-421 (441)
104 COG4581 Superfamily II RNA hel 100.0 3.7E-27 8.1E-32 256.6 26.2 314 200-535 119-536 (1041)
105 PRK11448 hsdR type I restricti 100.0 1.8E-26 3.9E-31 261.4 27.1 310 200-524 413-801 (1123)
106 KOG0923 mRNA splicing factor A 99.9 1.6E-26 3.4E-31 233.7 19.9 309 203-538 268-608 (902)
107 KOG0384 Chromodomain-helicase 99.9 5.1E-26 1.1E-30 244.4 22.7 322 199-538 369-813 (1373)
108 PF00270 DEAD: DEAD/DEAH box h 99.9 1.1E-25 2.4E-30 206.4 19.0 165 202-375 1-168 (169)
109 KOG0950 DNA polymerase theta/e 99.9 1.1E-25 2.4E-30 237.6 21.4 330 197-545 220-620 (1008)
110 KOG0389 SNF2 family DNA-depend 99.9 5.4E-25 1.2E-29 227.0 23.2 322 200-537 399-889 (941)
111 KOG0924 mRNA splicing factor A 99.9 5E-25 1.1E-29 223.2 19.4 307 203-537 359-698 (1042)
112 PRK12900 secA preprotein trans 99.9 4.8E-24 1E-28 229.9 23.8 140 411-553 581-732 (1025)
113 KOG0392 SNF2 family DNA-depend 99.9 3.6E-24 7.9E-29 229.3 21.0 328 200-537 975-1455(1549)
114 KOG0390 DNA repair protein, SN 99.9 5.3E-23 1.1E-27 218.5 27.2 323 200-533 238-702 (776)
115 KOG1000 Chromatin remodeling p 99.9 1.4E-22 3E-27 199.0 26.7 318 199-536 197-601 (689)
116 COG1203 CRISPR-associated heli 99.9 3.2E-23 6.9E-28 229.3 23.6 328 201-539 196-553 (733)
117 KOG1002 Nucleotide excision re 99.9 4E-23 8.7E-28 202.5 20.2 137 412-550 620-761 (791)
118 KOG0391 SNF2 family DNA-depend 99.9 4.8E-23 1.1E-27 218.6 21.4 128 410-538 1258-1387(1958)
119 COG1110 Reverse gyrase [DNA re 99.9 2.1E-21 4.6E-26 206.4 30.3 279 197-507 80-416 (1187)
120 KOG0920 ATP-dependent RNA heli 99.9 3.9E-22 8.5E-27 215.4 24.1 317 202-538 175-546 (924)
121 PF06862 DUF1253: Protein of u 99.9 6.6E-21 1.4E-25 192.7 29.0 294 253-547 36-426 (442)
122 KOG0386 Chromatin remodeling c 99.9 9.5E-23 2.1E-27 215.5 14.9 324 199-538 393-838 (1157)
123 TIGR00631 uvrb excinuclease AB 99.9 4.2E-21 9.1E-26 207.8 27.3 134 412-547 426-564 (655)
124 TIGR01407 dinG_rel DnaQ family 99.9 1.1E-20 2.4E-25 213.6 31.1 324 197-536 243-814 (850)
125 PRK12326 preprotein translocas 99.9 8.6E-21 1.9E-25 199.5 26.6 317 200-539 78-550 (764)
126 PRK05298 excinuclease ABC subu 99.9 8.4E-21 1.8E-25 207.2 26.1 147 413-561 431-591 (652)
127 KOG2340 Uncharacterized conser 99.9 3E-21 6.5E-26 191.2 17.2 349 199-548 215-680 (698)
128 COG4096 HsdR Type I site-speci 99.9 1.2E-20 2.7E-25 197.8 21.7 298 199-523 164-525 (875)
129 KOG0925 mRNA splicing factor A 99.9 1.6E-20 3.5E-25 184.2 21.0 327 177-537 22-388 (699)
130 PRK13103 secA preprotein trans 99.9 5.1E-20 1.1E-24 198.5 25.9 330 199-551 81-610 (913)
131 KOG0388 SNF2 family DNA-depend 99.9 5.2E-21 1.1E-25 194.7 16.3 126 411-537 1027-1155(1185)
132 TIGR00348 hsdR type I site-spe 99.9 2.5E-19 5.5E-24 196.4 30.6 313 201-534 239-649 (667)
133 KOG1123 RNA polymerase II tran 99.9 4.2E-21 9.1E-26 188.8 14.4 329 184-542 286-659 (776)
134 KOG0949 Predicted helicase, DE 99.9 8.6E-21 1.9E-25 199.7 16.5 343 200-556 511-1067(1330)
135 PRK12903 secA preprotein trans 99.8 4.5E-19 9.7E-24 189.1 26.5 330 200-552 78-560 (925)
136 smart00487 DEXDc DEAD-like hel 99.8 3.7E-19 7.9E-24 167.4 21.4 184 197-390 5-190 (201)
137 COG1198 PriA Primosomal protei 99.8 3.9E-18 8.4E-23 182.9 28.8 320 199-543 197-610 (730)
138 CHL00122 secA preprotein trans 99.8 2.9E-18 6.2E-23 184.3 24.9 275 200-496 76-491 (870)
139 PRK07246 bifunctional ATP-depe 99.8 7.5E-18 1.6E-22 187.9 29.2 316 197-536 243-783 (820)
140 COG0556 UvrB Helicase subunit 99.8 6.5E-18 1.4E-22 168.5 24.9 146 414-561 432-591 (663)
141 KOG4439 RNA polymerase II tran 99.8 1.3E-18 2.7E-23 178.0 19.2 121 412-532 729-852 (901)
142 TIGR03117 cas_csf4 CRISPR-asso 99.8 3.2E-16 6.9E-21 167.2 32.5 118 417-536 458-616 (636)
143 cd00079 HELICc Helicase superf 99.8 2.8E-18 6E-23 149.9 13.7 120 412-532 12-131 (131)
144 PRK12902 secA preprotein trans 99.8 7.3E-17 1.6E-21 173.1 26.8 275 200-496 85-506 (939)
145 KOG1015 Transcription regulato 99.8 1.6E-17 3.4E-22 174.3 21.0 109 428-536 1141-1275(1567)
146 KOG4150 Predicted ATP-dependen 99.8 4.3E-18 9.3E-23 170.0 15.6 320 199-533 285-637 (1034)
147 PF00271 Helicase_C: Helicase 99.8 1.9E-18 4.1E-23 135.9 9.3 78 447-524 1-78 (78)
148 PRK08074 bifunctional ATP-depe 99.7 1.1E-15 2.4E-20 173.8 31.4 121 416-536 739-893 (928)
149 KOG0953 Mitochondrial RNA heli 99.7 7.6E-17 1.7E-21 161.3 17.0 267 218-535 194-476 (700)
150 COG4889 Predicted helicase [Ge 99.7 6.1E-17 1.3E-21 168.9 16.6 313 197-523 158-572 (1518)
151 cd00046 DEXDc DEAD-like helica 99.7 7.5E-16 1.6E-20 136.2 16.2 144 216-369 1-144 (144)
152 COG0553 HepA Superfamily II DN 99.7 1.7E-15 3.7E-20 175.2 22.6 136 412-548 692-832 (866)
153 PRK12901 secA preprotein trans 99.7 9.5E-15 2.1E-19 158.6 22.9 138 411-552 611-761 (1112)
154 PRK11747 dinG ATP-dependent DN 99.7 9.5E-14 2.1E-18 153.2 30.1 117 415-536 521-674 (697)
155 KOG0951 RNA helicase BRR2, DEA 99.6 9.1E-15 2E-19 158.4 20.9 316 198-543 1141-1501(1674)
156 COG1199 DinG Rad3-related DNA 99.6 2.1E-14 4.5E-19 159.8 24.7 121 413-536 463-617 (654)
157 PF04851 ResIII: Type III rest 99.6 4.7E-15 1E-19 137.7 13.7 152 200-370 3-183 (184)
158 smart00490 HELICc helicase sup 99.6 1.6E-15 3.4E-20 120.5 8.9 81 444-524 2-82 (82)
159 TIGR00604 rad3 DNA repair heli 99.6 3.4E-13 7.4E-18 150.1 28.3 140 414-563 507-692 (705)
160 TIGR02562 cas3_yersinia CRISPR 99.5 4.1E-13 8.9E-18 146.8 18.9 91 432-525 759-881 (1110)
161 PF02399 Herpes_ori_bp: Origin 99.5 3.3E-12 7.2E-17 136.4 23.6 288 218-536 52-388 (824)
162 KOG1016 Predicted DNA helicase 99.4 8.4E-12 1.8E-16 129.4 20.0 117 430-546 720-857 (1387)
163 PF00176 SNF2_N: SNF2 family N 99.4 3.4E-12 7.4E-17 128.4 13.9 155 204-370 1-173 (299)
164 PRK14873 primosome assembly pr 99.4 1.5E-10 3.2E-15 125.8 26.8 133 223-376 168-310 (665)
165 COG0653 SecA Preprotein transl 99.3 1.2E-10 2.6E-15 125.6 17.9 316 200-538 80-547 (822)
166 PF07652 Flavi_DEAD: Flaviviru 99.2 1.3E-10 2.8E-15 98.7 12.2 135 215-373 4-140 (148)
167 KOG1001 Helicase-like transcri 99.2 6.4E-11 1.4E-15 127.7 11.8 119 413-531 523-643 (674)
168 COG0610 Type I site-specific r 99.2 4.7E-09 1E-13 119.3 25.6 299 216-534 274-651 (962)
169 smart00489 DEXDc3 DEAD-like he 99.1 6.5E-10 1.4E-14 109.9 14.0 73 200-277 8-84 (289)
170 smart00488 DEXDc2 DEAD-like he 99.1 6.5E-10 1.4E-14 109.9 14.0 73 200-277 8-84 (289)
171 KOG0921 Dosage compensation co 99.0 1.9E-09 4.2E-14 114.2 11.2 304 214-535 392-773 (1282)
172 PF07517 SecA_DEAD: SecA DEAD- 98.9 8.2E-09 1.8E-13 99.2 11.8 128 199-341 76-210 (266)
173 TIGR00596 rad1 DNA repair prot 98.6 1.8E-06 3.9E-11 95.9 19.3 65 305-369 8-72 (814)
174 KOG0952 DNA/RNA helicase MER3/ 98.6 7.8E-09 1.7E-13 111.9 -0.3 142 198-352 925-1069(1230)
175 PF13872 AAA_34: P-loop contai 98.5 1.9E-06 4.2E-11 83.1 13.2 172 185-376 26-227 (303)
176 PRK15483 type III restriction- 98.4 3.2E-06 7E-11 94.0 14.8 72 479-550 501-582 (986)
177 PF13086 AAA_11: AAA domain; P 98.4 2.6E-06 5.7E-11 82.1 12.7 73 201-276 2-75 (236)
178 KOG0383 Predicted helicase [Ge 98.3 1.9E-08 4.1E-13 107.5 -5.8 65 427-492 629-696 (696)
179 PF13604 AAA_30: AAA domain; P 98.3 2.7E-06 5.9E-11 79.3 8.8 123 200-368 1-130 (196)
180 KOG1131 RNA polymerase II tran 98.3 0.00015 3.2E-09 73.7 20.3 108 428-536 529-680 (755)
181 PF13307 Helicase_C_2: Helicas 98.3 2.2E-06 4.7E-11 77.7 6.9 107 427-535 7-149 (167)
182 PF12340 DUF3638: Protein of u 98.2 1.3E-05 2.8E-10 74.6 11.4 151 181-342 4-186 (229)
183 PF02562 PhoH: PhoH-like prote 98.2 4.2E-06 9.2E-11 77.3 7.1 144 201-368 5-155 (205)
184 COG3587 Restriction endonuclea 98.1 8.1E-05 1.8E-09 80.1 15.9 71 478-548 482-565 (985)
185 KOG1803 DNA helicase [Replicat 98.0 1.2E-05 2.7E-10 83.2 7.3 65 200-275 185-250 (649)
186 KOG1802 RNA helicase nonsense 98.0 5.6E-05 1.2E-09 78.8 12.0 78 197-288 407-484 (935)
187 PF09848 DUF2075: Uncharacteri 98.0 2E-05 4.4E-10 80.8 8.9 108 217-355 3-117 (352)
188 KOG1132 Helicase of the DEAD s 97.9 5.2E-05 1.1E-09 81.8 10.9 80 427-507 559-655 (945)
189 PRK10875 recD exonuclease V su 97.9 8.1E-05 1.8E-09 80.8 12.2 142 202-368 154-301 (615)
190 TIGR00376 DNA helicase, putati 97.9 8.5E-05 1.8E-09 81.6 12.2 68 199-277 156-224 (637)
191 TIGR01447 recD exodeoxyribonuc 97.9 0.00014 3E-09 78.9 13.3 143 202-368 147-295 (586)
192 TIGR01448 recD_rel helicase, p 97.7 0.00022 4.8E-09 79.6 12.1 126 199-368 322-452 (720)
193 PRK10536 hypothetical protein; 97.7 0.00045 9.8E-09 65.8 11.3 46 197-242 56-101 (262)
194 PF13245 AAA_19: Part of AAA d 97.6 0.00023 5E-09 54.7 6.6 55 213-274 7-62 (76)
195 PF13401 AAA_22: AAA domain; P 97.4 0.00065 1.4E-08 58.7 7.9 36 330-368 89-124 (131)
196 TIGR02768 TraA_Ti Ti-type conj 97.4 0.0018 4E-08 72.7 13.0 122 199-366 351-474 (744)
197 PRK13889 conjugal transfer rel 97.4 0.0016 3.5E-08 74.2 12.5 124 199-368 345-470 (988)
198 PRK04296 thymidine kinase; Pro 97.3 0.00039 8.5E-09 64.4 5.5 52 310-368 63-114 (190)
199 PF13871 Helicase_C_4: Helicas 97.3 0.00095 2.1E-08 64.5 8.0 82 470-551 52-145 (278)
200 smart00492 HELICc3 helicase su 97.2 0.0026 5.6E-08 55.5 9.4 52 457-508 25-79 (141)
201 KOG1805 DNA replication helica 97.2 0.0018 4E-08 71.0 10.1 136 186-342 657-810 (1100)
202 KOG0298 DEAD box-containing he 97.2 0.001 2.2E-08 74.9 8.2 165 214-385 373-568 (1394)
203 PF00580 UvrD-helicase: UvrD/R 97.1 0.0015 3.3E-08 65.8 8.2 123 201-338 1-125 (315)
204 smart00491 HELICc2 helicase su 97.1 0.0028 6.2E-08 55.4 8.5 70 465-534 30-137 (142)
205 PRK13826 Dtr system oriT relax 97.1 0.0088 1.9E-07 68.9 14.3 137 186-368 366-505 (1102)
206 PRK08181 transposase; Validate 97.0 0.0066 1.4E-07 59.2 11.4 22 210-231 101-122 (269)
207 PRK06526 transposase; Provisio 97.0 0.0031 6.8E-08 61.1 9.0 26 207-232 90-115 (254)
208 PF14617 CMS1: U3-containing 9 97.0 0.002 4.4E-08 61.4 7.4 86 253-339 125-212 (252)
209 COG3421 Uncharacterized protei 97.0 0.0049 1.1E-07 64.2 10.6 68 303-371 80-167 (812)
210 PRK08116 hypothetical protein; 97.0 0.011 2.3E-07 58.1 12.3 45 217-273 116-160 (268)
211 PRK12723 flagellar biosynthesi 97.0 0.045 9.8E-07 56.3 17.2 129 216-380 175-309 (388)
212 TIGR02760 TraI_TIGR conjugativ 97.0 0.062 1.3E-06 66.7 21.2 238 200-479 429-686 (1960)
213 COG1875 NYN ribonuclease and A 96.9 0.002 4.4E-08 63.4 6.8 146 197-366 225-385 (436)
214 PRK14974 cell division protein 96.9 0.018 3.9E-07 58.0 13.1 55 327-381 221-276 (336)
215 PRK12377 putative replication 96.9 0.0064 1.4E-07 58.5 9.5 46 216-273 102-147 (248)
216 PRK14722 flhF flagellar biosyn 96.8 0.0043 9.4E-08 63.1 8.6 20 214-233 136-155 (374)
217 PF05970 PIF1: PIF1-like helic 96.8 0.0026 5.6E-08 65.5 6.7 59 201-270 2-66 (364)
218 PRK06921 hypothetical protein; 96.7 0.014 3E-07 57.1 11.1 27 215-242 117-143 (266)
219 PRK07952 DNA replication prote 96.5 0.032 6.8E-07 53.6 11.7 48 326-373 160-209 (244)
220 cd00009 AAA The AAA+ (ATPases 96.5 0.024 5.2E-07 49.5 10.3 17 215-231 19-35 (151)
221 TIGR01075 uvrD DNA helicase II 96.5 0.0083 1.8E-07 67.7 8.6 71 199-278 3-73 (715)
222 PRK05642 DNA replication initi 96.4 0.0095 2.1E-07 57.2 7.5 45 327-371 96-141 (234)
223 PRK05703 flhF flagellar biosyn 96.4 0.11 2.3E-06 54.5 15.4 67 310-380 285-354 (424)
224 KOG1133 Helicase of the DEAD s 96.4 0.08 1.7E-06 56.5 14.1 123 410-535 610-779 (821)
225 PRK10919 ATP-dependent DNA hel 96.3 0.018 4E-07 64.2 10.0 71 200-279 2-72 (672)
226 PRK11773 uvrD DNA-dependent he 96.3 0.01 2.2E-07 67.0 8.0 72 199-279 8-79 (721)
227 smart00382 AAA ATPases associa 96.3 0.0072 1.6E-07 52.4 5.6 17 215-231 2-18 (148)
228 PRK11889 flhF flagellar biosyn 96.3 0.091 2E-06 53.5 13.7 72 309-381 302-375 (436)
229 PHA02533 17 large terminase pr 96.3 0.025 5.4E-07 60.8 10.3 147 200-368 59-209 (534)
230 PF00448 SRP54: SRP54-type pro 96.2 0.018 4E-07 53.4 8.0 55 327-381 82-137 (196)
231 PRK11054 helD DNA helicase IV; 96.2 0.024 5.1E-07 63.0 10.0 71 199-278 195-265 (684)
232 PRK06893 DNA replication initi 96.2 0.014 3E-07 55.9 7.3 47 326-372 89-137 (229)
233 PRK08084 DNA replication initi 96.2 0.016 3.5E-07 55.7 7.5 43 329-371 98-142 (235)
234 TIGR03420 DnaA_homol_Hda DnaA 96.1 0.024 5.1E-07 54.2 8.5 42 329-370 91-133 (226)
235 KOG0989 Replication factor C, 96.1 0.012 2.6E-07 56.8 5.9 48 323-371 124-171 (346)
236 PRK08727 hypothetical protein; 96.0 0.026 5.7E-07 54.1 8.3 15 217-231 43-57 (233)
237 cd01120 RecA-like_NTPases RecA 96.0 0.03 6.6E-07 50.0 8.1 17 326-342 83-99 (165)
238 TIGR01074 rep ATP-dependent DN 96.0 0.039 8.4E-07 62.0 10.5 70 201-279 2-71 (664)
239 COG1419 FlhF Flagellar GTP-bin 96.0 0.22 4.8E-06 50.6 14.6 132 214-381 202-336 (407)
240 PTZ00293 thymidine kinase; Pro 95.9 0.051 1.1E-06 50.5 9.0 35 218-263 7-41 (211)
241 PRK13709 conjugal transfer nic 95.9 0.064 1.4E-06 65.0 12.0 65 200-271 967-1033(1747)
242 PRK09183 transposase/IS protei 95.8 0.06 1.3E-06 52.5 9.7 25 208-232 95-119 (259)
243 PRK00149 dnaA chromosomal repl 95.8 0.052 1.1E-06 57.8 9.9 47 328-374 211-259 (450)
244 COG1435 Tdk Thymidine kinase [ 95.7 0.12 2.6E-06 46.9 10.4 89 218-341 7-95 (201)
245 PRK06835 DNA replication prote 95.7 0.052 1.1E-06 54.6 9.1 28 214-242 182-209 (329)
246 PRK08769 DNA polymerase III su 95.7 0.053 1.2E-06 54.2 8.9 44 198-242 2-52 (319)
247 PRK14712 conjugal transfer nic 95.7 0.068 1.5E-06 63.9 11.0 65 200-271 835-901 (1623)
248 COG1484 DnaC DNA replication p 95.6 0.074 1.6E-06 51.6 9.5 53 212-276 102-154 (254)
249 PRK14087 dnaA chromosomal repl 95.6 0.065 1.4E-06 56.7 9.8 48 326-373 204-253 (450)
250 PF05127 Helicase_RecD: Helica 95.6 0.0069 1.5E-07 54.7 2.1 124 219-370 1-124 (177)
251 PRK12727 flagellar biosynthesi 95.6 0.15 3.3E-06 54.0 12.1 65 312-381 416-482 (559)
252 KOG1513 Nuclear helicase MOP-3 95.6 0.014 3.1E-07 62.7 4.5 79 472-550 850-940 (1300)
253 TIGR00362 DnaA chromosomal rep 95.5 0.073 1.6E-06 55.8 9.9 26 216-242 137-162 (405)
254 COG3973 Superfamily I DNA and 95.5 0.075 1.6E-06 56.0 9.4 59 216-279 227-285 (747)
255 PF03354 Terminase_1: Phage Te 95.5 0.032 6.9E-07 59.8 7.1 71 203-280 1-80 (477)
256 cd01124 KaiC KaiC is a circadi 95.5 0.12 2.6E-06 47.5 10.2 49 218-278 2-50 (187)
257 TIGR01547 phage_term_2 phage t 95.5 0.051 1.1E-06 56.8 8.4 144 218-381 4-152 (396)
258 PRK12402 replication factor C 95.4 0.11 2.3E-06 53.1 10.5 40 327-368 124-163 (337)
259 PRK06731 flhF flagellar biosyn 95.4 0.35 7.7E-06 47.2 13.3 131 214-381 74-209 (270)
260 CHL00181 cbbX CbbX; Provisiona 95.4 0.23 5E-06 49.2 12.2 20 214-233 58-77 (287)
261 PRK08903 DnaA regulatory inact 95.3 0.07 1.5E-06 51.0 8.3 43 328-371 90-133 (227)
262 PRK12422 chromosomal replicati 95.3 0.12 2.6E-06 54.5 10.5 50 327-376 201-252 (445)
263 PRK14086 dnaA chromosomal repl 95.3 0.092 2E-06 56.8 9.7 48 326-373 375-424 (617)
264 PF00308 Bac_DnaA: Bacterial d 95.3 0.093 2E-06 49.8 8.8 107 217-373 36-144 (219)
265 PRK14721 flhF flagellar biosyn 95.2 0.41 9E-06 49.7 14.0 19 214-232 190-208 (420)
266 PRK05707 DNA polymerase III su 95.2 0.033 7.2E-07 56.2 5.8 33 200-232 3-39 (328)
267 PRK14088 dnaA chromosomal repl 95.1 0.18 4E-06 53.2 11.3 49 328-376 194-244 (440)
268 PRK00411 cdc6 cell division co 95.1 0.16 3.4E-06 53.2 10.6 16 216-231 56-71 (394)
269 PF05621 TniB: Bacterial TniB 95.0 0.074 1.6E-06 52.0 7.4 99 216-345 62-162 (302)
270 PRK14723 flhF flagellar biosyn 95.0 0.11 2.3E-06 57.7 9.4 67 310-380 249-317 (767)
271 TIGR02881 spore_V_K stage V sp 95.0 0.21 4.6E-06 48.9 10.7 17 216-232 43-59 (261)
272 TIGR01073 pcrA ATP-dependent D 95.0 0.11 2.3E-06 59.0 9.8 72 199-279 3-74 (726)
273 PRK00771 signal recognition pa 95.0 0.16 3.5E-06 53.2 10.3 53 329-381 176-229 (437)
274 PRK10917 ATP-dependent DNA hel 95.0 0.13 2.8E-06 57.6 10.2 75 429-503 310-389 (681)
275 TIGR02785 addA_Gpos recombinat 94.9 0.066 1.4E-06 64.0 8.1 123 201-339 2-126 (1232)
276 TIGR03499 FlhF flagellar biosy 94.9 0.065 1.4E-06 53.0 6.8 19 214-232 193-211 (282)
277 PRK11331 5-methylcytosine-spec 94.9 0.088 1.9E-06 54.7 7.8 30 203-232 182-211 (459)
278 PTZ00112 origin recognition co 94.8 0.33 7.1E-06 54.3 12.2 17 327-343 868-884 (1164)
279 PHA02544 44 clamp loader, smal 94.8 0.17 3.7E-06 51.1 9.7 39 328-366 100-138 (316)
280 TIGR02760 TraI_TIGR conjugativ 94.7 0.17 3.6E-06 63.1 11.0 65 198-271 1017-1085(1960)
281 PRK05580 primosome assembly pr 94.7 0.3 6.5E-06 54.7 12.1 91 413-505 175-266 (679)
282 PRK14873 primosome assembly pr 94.6 0.29 6.4E-06 54.2 11.3 93 411-505 171-265 (665)
283 PF00004 AAA: ATPase family as 94.5 0.25 5.5E-06 42.2 9.0 16 329-344 59-74 (132)
284 PRK14964 DNA polymerase III su 94.5 0.22 4.7E-06 52.9 9.9 18 217-234 37-54 (491)
285 TIGR02880 cbbX_cfxQ probable R 94.5 0.33 7.1E-06 48.1 10.7 19 214-232 57-75 (284)
286 COG2805 PilT Tfp pilus assembl 94.5 0.047 1E-06 52.7 4.3 52 176-245 102-154 (353)
287 PF05876 Terminase_GpA: Phage 94.5 0.046 1E-06 59.4 4.9 154 200-370 16-180 (557)
288 PRK12724 flagellar biosynthesi 94.4 1.5 3.3E-05 45.3 15.3 54 327-380 298-356 (432)
289 COG2256 MGS1 ATPase related to 94.4 0.25 5.3E-06 49.9 9.2 17 217-233 50-66 (436)
290 KOG1513 Nuclear helicase MOP-3 94.4 0.061 1.3E-06 58.1 5.3 157 197-368 261-453 (1300)
291 KOG0991 Replication factor C, 94.4 0.076 1.7E-06 49.2 5.3 42 326-368 111-152 (333)
292 PRK13833 conjugal transfer pro 94.4 0.091 2E-06 52.6 6.4 58 200-266 128-186 (323)
293 PRK06995 flhF flagellar biosyn 94.4 0.17 3.8E-06 53.4 8.7 19 215-233 256-274 (484)
294 KOG0298 DEAD box-containing he 94.3 0.058 1.3E-06 61.4 5.3 103 426-532 1218-1320(1394)
295 PRK08939 primosomal protein Dn 94.3 0.47 1E-05 47.4 11.3 26 215-241 156-181 (306)
296 PRK14960 DNA polymerase III su 94.3 0.16 3.5E-06 55.2 8.4 40 327-368 117-156 (702)
297 TIGR00595 priA primosomal prot 94.3 0.32 6.9E-06 52.4 10.7 89 413-503 10-99 (505)
298 COG4962 CpaF Flp pilus assembl 94.3 0.13 2.8E-06 51.0 7.0 79 176-269 136-215 (355)
299 PLN03025 replication factor C 94.3 0.22 4.7E-06 50.4 9.1 41 327-369 98-138 (319)
300 PRK07764 DNA polymerase III su 94.3 0.18 3.9E-06 57.2 9.0 43 326-370 118-160 (824)
301 PRK12726 flagellar biosynthesi 94.2 0.38 8.2E-06 48.9 10.3 19 214-232 205-223 (407)
302 PF13177 DNA_pol3_delta2: DNA 94.1 0.16 3.5E-06 45.6 6.9 42 327-369 101-142 (162)
303 PF13173 AAA_14: AAA domain 94.0 0.66 1.4E-05 39.7 10.4 39 328-370 61-99 (128)
304 PF05496 RuvB_N: Holliday junc 94.0 0.09 2E-06 49.1 5.0 15 217-231 52-66 (233)
305 COG1444 Predicted P-loop ATPas 94.0 0.18 4E-06 55.5 8.1 141 201-370 215-357 (758)
306 PRK07003 DNA polymerase III su 94.0 0.11 2.5E-06 57.1 6.5 40 327-368 118-157 (830)
307 PRK07471 DNA polymerase III su 93.9 0.46 1E-05 48.8 10.6 137 217-368 43-180 (365)
308 PRK14949 DNA polymerase III su 93.9 0.19 4.1E-06 56.5 8.1 43 327-371 118-160 (944)
309 TIGR00643 recG ATP-dependent D 93.9 0.25 5.4E-06 54.9 9.3 75 429-503 284-363 (630)
310 COG1110 Reverse gyrase [DNA re 93.8 0.29 6.2E-06 55.0 9.2 64 426-489 122-191 (1187)
311 PRK06964 DNA polymerase III su 93.8 0.26 5.7E-06 49.9 8.4 32 201-232 2-38 (342)
312 PRK06871 DNA polymerase III su 93.7 0.27 5.7E-06 49.4 8.1 32 201-232 3-41 (325)
313 PRK14961 DNA polymerase III su 93.7 0.17 3.7E-06 52.1 7.1 18 326-343 117-134 (363)
314 PHA03333 putative ATPase subun 93.6 0.87 1.9E-05 49.6 12.2 148 201-369 170-332 (752)
315 PRK13894 conjugal transfer ATP 93.6 0.14 3.1E-06 51.4 6.1 58 200-266 132-190 (319)
316 COG0470 HolB ATPase involved i 93.6 0.32 7E-06 49.2 8.9 42 327-370 108-149 (325)
317 TIGR02782 TrbB_P P-type conjug 93.6 0.19 4.1E-06 50.1 6.9 57 201-266 117-174 (299)
318 PRK04195 replication factor C 93.5 0.32 6.8E-06 52.3 9.0 17 215-231 39-55 (482)
319 PF01695 IstB_IS21: IstB-like 93.5 0.16 3.5E-06 46.3 5.8 52 207-270 39-90 (178)
320 PRK14958 DNA polymerase III su 93.4 0.17 3.6E-06 54.4 6.7 39 327-366 118-156 (509)
321 TIGR00580 mfd transcription-re 93.4 0.38 8.3E-06 55.4 9.8 75 429-503 500-579 (926)
322 PRK14962 DNA polymerase III su 93.4 0.24 5.2E-06 52.6 7.7 16 218-233 39-54 (472)
323 KOG2028 ATPase related to the 93.4 0.3 6.5E-06 48.5 7.5 15 217-231 164-178 (554)
324 COG1474 CDC6 Cdc6-related prot 93.3 0.53 1.1E-05 48.3 9.8 30 326-356 121-150 (366)
325 PF06745 KaiC: KaiC; InterPro 93.2 0.42 9.2E-06 45.5 8.5 52 215-278 19-71 (226)
326 TIGR03015 pepcterm_ATPase puta 93.2 1 2.2E-05 44.1 11.4 32 200-231 23-59 (269)
327 COG1198 PriA Primosomal protei 93.1 0.32 7E-06 53.9 8.3 95 407-503 224-319 (730)
328 PF10593 Z1: Z1 domain; Inter 93.1 0.25 5.4E-06 47.3 6.6 92 453-549 110-206 (239)
329 PRK08691 DNA polymerase III su 93.1 0.24 5.1E-06 54.4 7.2 40 326-366 117-156 (709)
330 PRK08699 DNA polymerase III su 93.1 0.54 1.2E-05 47.4 9.3 31 202-232 3-38 (325)
331 PRK07994 DNA polymerase III su 93.1 0.77 1.7E-05 50.5 11.1 18 327-344 118-135 (647)
332 COG2804 PulE Type II secretory 93.0 0.12 2.6E-06 53.9 4.5 40 202-242 243-284 (500)
333 TIGR00678 holB DNA polymerase 93.0 0.68 1.5E-05 42.7 9.3 17 326-342 94-110 (188)
334 PRK14955 DNA polymerase III su 93.0 0.45 9.7E-06 49.7 8.9 17 326-342 125-141 (397)
335 PRK12323 DNA polymerase III su 92.9 0.21 4.6E-06 54.2 6.4 40 326-366 122-161 (700)
336 PRK09111 DNA polymerase III su 92.9 0.47 1E-05 51.9 9.2 40 326-366 130-169 (598)
337 TIGR01425 SRP54_euk signal rec 92.9 1.4 3.1E-05 45.8 12.2 53 328-380 182-235 (429)
338 PF00265 TK: Thymidine kinase; 92.9 0.19 4.1E-06 45.7 5.2 36 218-264 4-39 (176)
339 PRK14963 DNA polymerase III su 92.8 0.39 8.4E-06 51.5 8.3 15 218-232 39-53 (504)
340 PRK06090 DNA polymerase III su 92.8 0.34 7.3E-06 48.5 7.3 33 200-232 3-42 (319)
341 PRK14956 DNA polymerase III su 92.8 0.22 4.7E-06 52.4 6.2 16 218-233 43-58 (484)
342 COG3972 Superfamily I DNA and 92.8 0.39 8.5E-06 49.5 7.7 71 198-278 160-230 (660)
343 cd01122 GP4d_helicase GP4d_hel 92.7 0.83 1.8E-05 44.9 10.1 19 213-231 28-46 (271)
344 PRK13341 recombination factor 92.7 0.57 1.2E-05 52.5 9.7 40 328-372 109-148 (725)
345 COG0593 DnaA ATPase involved i 92.7 0.52 1.1E-05 48.5 8.6 47 328-374 175-223 (408)
346 COG2909 MalT ATP-dependent tra 92.6 0.31 6.7E-06 53.8 7.2 43 329-371 130-172 (894)
347 TIGR00064 ftsY signal recognit 92.6 0.66 1.4E-05 45.5 9.0 55 327-381 153-214 (272)
348 PRK14959 DNA polymerase III su 92.5 0.38 8.3E-06 52.4 7.7 18 217-234 40-57 (624)
349 PRK14952 DNA polymerase III su 92.4 0.4 8.7E-06 52.2 7.8 40 326-366 116-155 (584)
350 KOG0741 AAA+-type ATPase [Post 92.4 0.65 1.4E-05 48.5 8.7 32 326-357 322-362 (744)
351 PRK08533 flagellar accessory p 92.4 1.3 2.7E-05 42.4 10.4 53 214-278 23-75 (230)
352 TIGR02928 orc1/cdc6 family rep 92.4 0.84 1.8E-05 47.1 10.0 16 216-231 41-56 (365)
353 PF06733 DEAD_2: DEAD_2; Inte 92.3 0.095 2E-06 47.8 2.6 45 299-343 114-160 (174)
354 PF02534 T4SS-DNA_transf: Type 92.3 0.19 4.1E-06 53.9 5.2 50 216-278 45-94 (469)
355 PRK10867 signal recognition pa 92.3 0.86 1.9E-05 47.7 9.7 16 217-232 102-117 (433)
356 PRK09112 DNA polymerase III su 92.2 0.69 1.5E-05 47.2 8.9 40 326-366 139-178 (351)
357 PRK00440 rfc replication facto 92.2 0.93 2E-05 45.7 10.0 39 327-366 101-139 (319)
358 PF05729 NACHT: NACHT domain 92.2 1.1 2.3E-05 40.0 9.4 25 218-243 3-27 (166)
359 PRK13342 recombination factor 92.2 0.68 1.5E-05 48.7 9.0 37 328-369 92-128 (413)
360 PRK14957 DNA polymerase III su 92.2 0.45 9.8E-06 51.3 7.8 40 326-366 117-156 (546)
361 PRK14954 DNA polymerase III su 92.1 0.39 8.5E-06 52.7 7.4 17 326-342 125-141 (620)
362 PRK06645 DNA polymerase III su 92.1 0.39 8.5E-06 51.3 7.2 17 217-233 45-61 (507)
363 KOG0738 AAA+-type ATPase [Post 92.0 0.5 1.1E-05 47.4 7.2 16 216-231 246-261 (491)
364 cd01126 TraG_VirD4 The TraG/Tr 91.9 0.14 3.1E-06 53.2 3.6 48 217-277 1-48 (384)
365 TIGR03881 KaiC_arch_4 KaiC dom 91.9 1.1 2.3E-05 42.9 9.4 19 214-232 19-37 (229)
366 KOG0701 dsRNA-specific nucleas 91.9 0.11 2.5E-06 61.5 3.1 94 431-524 294-399 (1606)
367 PRK14969 DNA polymerase III su 91.9 0.47 1E-05 51.3 7.6 40 326-366 117-156 (527)
368 PRK05563 DNA polymerase III su 91.9 0.27 5.8E-06 53.6 5.8 18 326-343 117-134 (559)
369 PHA03368 DNA packaging termina 91.8 0.89 1.9E-05 49.3 9.3 134 214-370 253-391 (738)
370 cd03115 SRP The signal recogni 91.8 3.7 7.9E-05 37.1 12.4 55 327-381 81-136 (173)
371 PRK05896 DNA polymerase III su 91.8 0.34 7.3E-06 52.5 6.3 17 217-233 40-56 (605)
372 cd00561 CobA_CobO_BtuR ATP:cor 91.8 1.7 3.7E-05 38.6 9.7 53 326-378 93-147 (159)
373 PRK07993 DNA polymerase III su 91.6 0.21 4.7E-06 50.5 4.3 33 200-232 2-41 (334)
374 PRK07133 DNA polymerase III su 91.6 0.83 1.8E-05 50.7 9.1 17 326-342 116-132 (725)
375 TIGR02525 plasmid_TraJ plasmid 91.5 0.39 8.4E-06 49.2 6.2 27 215-242 149-175 (372)
376 PHA00729 NTP-binding motif con 91.5 2.5 5.4E-05 39.9 11.0 15 217-231 19-33 (226)
377 PRK14950 DNA polymerase III su 91.4 0.85 1.8E-05 50.2 9.1 17 326-342 118-134 (585)
378 PF01443 Viral_helicase1: Vira 91.3 0.21 4.6E-06 47.8 3.9 14 218-231 1-14 (234)
379 PRK10689 transcription-repair 91.3 0.65 1.4E-05 54.9 8.5 76 428-503 648-728 (1147)
380 PRK14948 DNA polymerase III su 91.3 0.38 8.1E-06 53.0 6.1 17 216-232 39-55 (620)
381 KOG0331 ATP-dependent RNA heli 91.2 3.7 8E-05 43.6 12.9 90 429-522 165-272 (519)
382 PRK13851 type IV secretion sys 91.1 0.24 5.1E-06 50.3 4.0 21 211-231 158-178 (344)
383 PRK11034 clpA ATP-dependent Cl 91.0 2.1 4.6E-05 48.3 11.8 44 330-373 280-327 (758)
384 cd00984 DnaB_C DnaB helicase C 91.0 1.8 4E-05 41.6 10.2 27 214-241 12-38 (242)
385 COG0513 SrmB Superfamily II DN 91.0 0.95 2E-05 49.0 8.8 87 413-503 80-180 (513)
386 TIGR02524 dot_icm_DotB Dot/Icm 90.9 0.27 5.8E-06 50.3 4.3 18 214-231 133-150 (358)
387 PRK09376 rho transcription ter 90.8 1.7 3.7E-05 44.5 9.7 29 203-231 154-185 (416)
388 PRK09087 hypothetical protein; 90.8 0.89 1.9E-05 43.3 7.5 40 330-371 89-129 (226)
389 COG1219 ClpX ATP-dependent pro 90.7 0.16 3.4E-06 49.5 2.3 29 213-243 95-123 (408)
390 TIGR00959 ffh signal recogniti 90.7 1.6 3.6E-05 45.6 9.9 16 217-232 101-116 (428)
391 PRK05986 cob(I)alamin adenolsy 90.6 3 6.5E-05 38.2 10.3 53 326-378 113-167 (191)
392 cd03239 ABC_SMC_head The struc 90.6 0.27 5.9E-06 44.9 3.7 42 327-368 115-157 (178)
393 PRK14951 DNA polymerase III su 90.6 0.47 1E-05 51.9 6.1 18 327-344 123-140 (618)
394 KOG1133 Helicase of the DEAD s 90.6 0.32 6.9E-06 52.2 4.5 41 200-240 15-59 (821)
395 PRK13897 type IV secretion sys 90.6 0.25 5.4E-06 54.0 3.9 50 216-278 159-208 (606)
396 PRK06067 flagellar accessory p 90.4 1.9 4.1E-05 41.3 9.6 52 215-278 25-76 (234)
397 PRK07940 DNA polymerase III su 90.2 1.7 3.6E-05 45.1 9.5 46 326-373 115-160 (394)
398 PF05707 Zot: Zonular occluden 90.2 0.7 1.5E-05 42.8 6.1 50 328-378 79-134 (193)
399 KOG0742 AAA+-type ATPase [Post 90.1 0.62 1.4E-05 47.0 5.8 16 216-231 385-400 (630)
400 PRK11823 DNA repair protein Ra 90.1 1.4 3.1E-05 46.6 9.0 52 215-278 80-131 (446)
401 PRK04841 transcriptional regul 90.1 2 4.4E-05 50.3 11.4 44 328-371 121-164 (903)
402 cd01121 Sms Sms (bacterial rad 90.1 1.6 3.5E-05 44.9 9.1 90 215-341 82-171 (372)
403 KOG0058 Peptide exporter, ABC 90.0 0.6 1.3E-05 50.8 6.1 41 326-367 620-660 (716)
404 PF03969 AFG1_ATPase: AFG1-lik 89.9 1.2 2.7E-05 45.5 8.1 109 215-372 62-171 (362)
405 TIGR03689 pup_AAA proteasome A 89.9 1.3 2.9E-05 47.3 8.6 17 215-231 216-232 (512)
406 COG1200 RecG RecG-like helicas 89.8 2.1 4.5E-05 46.5 9.9 88 414-503 298-390 (677)
407 KOG0733 Nuclear AAA ATPase (VC 89.8 1.5 3.3E-05 46.7 8.6 49 180-231 508-561 (802)
408 PRK14965 DNA polymerase III su 89.8 1.5 3.2E-05 48.2 9.1 41 326-368 117-157 (576)
409 PHA00350 putative assembly pro 89.7 2.3 5E-05 43.8 9.8 17 218-234 4-20 (399)
410 TIGR00767 rho transcription te 89.7 1.4 3.1E-05 45.2 8.2 19 213-231 166-184 (415)
411 TIGR02639 ClpA ATP-dependent C 89.5 3.3 7.1E-05 47.1 11.9 17 216-232 204-220 (731)
412 cd00268 DEADc DEAD-box helicas 89.5 2.3 5E-05 39.5 9.2 83 417-503 54-149 (203)
413 PRK10436 hypothetical protein; 89.4 0.39 8.4E-06 50.8 4.2 37 203-240 204-242 (462)
414 TIGR00708 cobA cob(I)alamin ad 89.2 4.8 0.0001 36.3 10.3 53 326-378 95-149 (173)
415 cd01130 VirB11-like_ATPase Typ 89.2 0.47 1E-05 43.7 4.1 33 199-231 8-41 (186)
416 PRK08451 DNA polymerase III su 89.0 1.5 3.2E-05 47.2 8.2 40 326-366 115-154 (535)
417 PF13555 AAA_29: P-loop contai 89.0 0.22 4.7E-06 36.3 1.4 33 207-241 15-47 (62)
418 TIGR03877 thermo_KaiC_1 KaiC d 89.0 0.69 1.5E-05 44.5 5.3 52 215-278 21-72 (237)
419 PRK07399 DNA polymerase III su 88.9 2.6 5.7E-05 42.3 9.5 54 311-367 108-161 (314)
420 PRK14953 DNA polymerase III su 88.8 0.81 1.8E-05 48.9 6.1 18 326-343 117-134 (486)
421 TIGR00635 ruvB Holliday juncti 88.8 0.63 1.4E-05 46.7 5.1 16 216-231 31-46 (305)
422 PTZ00454 26S protease regulato 88.8 2.1 4.5E-05 44.5 8.9 17 215-231 179-195 (398)
423 PRK13900 type IV secretion sys 88.8 0.35 7.7E-06 48.9 3.2 20 212-231 157-176 (332)
424 COG2255 RuvB Holliday junction 88.7 1.4 3.1E-05 42.5 6.9 16 217-232 54-69 (332)
425 PF03237 Terminase_6: Terminas 88.6 2.8 6.1E-05 43.1 10.0 105 219-343 1-112 (384)
426 PRK13850 type IV secretion sys 88.6 0.44 9.5E-06 52.7 4.0 49 216-277 140-188 (670)
427 PRK06647 DNA polymerase III su 88.6 1.7 3.8E-05 47.3 8.5 17 326-342 117-133 (563)
428 TIGR03345 VI_ClpV1 type VI sec 88.5 4.5 9.7E-05 46.6 12.1 16 216-231 209-224 (852)
429 TIGR01420 pilT_fam pilus retra 88.4 0.94 2E-05 46.2 6.1 17 215-231 122-138 (343)
430 KOG2228 Origin recognition com 88.4 6.3 0.00014 39.2 11.1 17 215-231 49-65 (408)
431 COG0552 FtsY Signal recognitio 88.4 7 0.00015 38.9 11.6 130 218-380 142-280 (340)
432 PF00437 T2SE: Type II/IV secr 88.3 0.38 8.3E-06 47.3 3.0 50 206-266 117-167 (270)
433 PRK14701 reverse gyrase; Provi 88.3 3 6.5E-05 51.2 10.9 61 428-488 121-187 (1638)
434 PRK06904 replicative DNA helic 88.2 6.5 0.00014 42.0 12.4 117 214-343 220-349 (472)
435 cd01129 PulE-GspE PulE/GspE Th 88.2 0.62 1.4E-05 45.5 4.4 30 202-231 65-96 (264)
436 PF03796 DnaB_C: DnaB-like hel 88.2 3.1 6.6E-05 40.6 9.3 112 215-343 19-145 (259)
437 KOG1807 Helicases [Replication 88.1 2 4.3E-05 46.9 8.2 82 203-293 381-462 (1025)
438 PRK14971 DNA polymerase III su 88.0 1.5 3.3E-05 48.4 7.7 42 325-368 118-159 (614)
439 PHA00012 I assembly protein 88.0 8.7 0.00019 38.2 11.9 54 327-381 80-139 (361)
440 PRK13764 ATPase; Provisional 87.9 0.74 1.6E-05 50.1 5.1 26 214-240 256-281 (602)
441 PF10412 TrwB_AAD_bind: Type I 87.8 0.85 1.8E-05 47.4 5.4 51 210-271 10-60 (386)
442 COG0210 UvrD Superfamily I DNA 87.6 1.6 3.4E-05 49.1 7.8 71 200-279 2-72 (655)
443 PRK03992 proteasome-activating 87.6 2 4.4E-05 44.6 8.0 16 216-231 166-181 (389)
444 TIGR02538 type_IV_pilB type IV 87.6 0.57 1.2E-05 51.2 4.1 38 202-240 301-340 (564)
445 PRK10263 DNA translocase FtsK; 87.6 2.3 4.9E-05 49.9 8.8 17 216-232 1011-1027(1355)
446 TIGR00763 lon ATP-dependent pr 87.6 1.7 3.6E-05 49.7 8.0 17 215-231 347-363 (775)
447 PRK00080 ruvB Holliday junctio 87.3 1 2.2E-05 45.7 5.5 16 216-231 52-67 (328)
448 TIGR03600 phage_DnaB phage rep 87.2 4.6 0.0001 42.6 10.6 27 213-240 192-218 (421)
449 COG0630 VirB11 Type IV secreto 87.1 1.3 2.7E-05 44.5 6.0 56 178-237 108-164 (312)
450 TIGR03346 chaperone_ClpB ATP-d 87.1 3.4 7.4E-05 47.8 10.2 16 216-231 195-210 (852)
451 COG1485 Predicted ATPase [Gene 87.0 1.7 3.8E-05 43.3 6.6 117 208-373 53-175 (367)
452 PRK05973 replicative DNA helic 86.9 1.3 2.8E-05 42.3 5.6 67 199-278 49-115 (237)
453 TIGR01243 CDC48 AAA family ATP 86.9 1.6 3.6E-05 49.5 7.5 16 216-231 488-503 (733)
454 PRK10865 protein disaggregatio 86.8 3.3 7.1E-05 47.8 9.8 16 216-231 200-215 (857)
455 PRK13876 conjugal transfer cou 86.7 0.65 1.4E-05 51.3 3.9 49 216-277 145-193 (663)
456 PF12846 AAA_10: AAA-like doma 86.6 0.92 2E-05 45.2 4.8 42 216-268 2-43 (304)
457 CHL00176 ftsH cell division pr 86.6 2.7 5.8E-05 46.6 8.5 16 216-231 217-232 (638)
458 TIGR01241 FtsH_fam ATP-depende 86.5 2.6 5.6E-05 45.5 8.4 16 216-231 89-104 (495)
459 TIGR02868 CydC thiol reductant 86.5 0.64 1.4E-05 50.7 3.8 19 213-231 359-377 (529)
460 COG1132 MdlB ABC-type multidru 86.4 1.1 2.5E-05 49.2 5.7 39 326-364 481-519 (567)
461 TIGR02533 type_II_gspE general 86.3 0.7 1.5E-05 49.4 3.8 30 202-231 227-258 (486)
462 KOG0347 RNA helicase [RNA proc 86.3 1.4 3E-05 46.3 5.6 67 432-502 266-345 (731)
463 CHL00095 clpC Clp protease ATP 86.2 4.5 9.7E-05 46.6 10.5 17 216-232 201-217 (821)
464 cd01125 repA Hexameric Replica 86.2 4.3 9.4E-05 39.0 9.0 15 218-232 4-18 (239)
465 PRK13822 conjugal transfer cou 86.0 1 2.2E-05 49.7 5.0 49 216-277 225-273 (641)
466 KOG0338 ATP-dependent RNA heli 86.0 4 8.6E-05 42.6 8.6 72 428-503 251-333 (691)
467 COG4626 Phage terminase-like p 85.7 5.7 0.00012 42.3 9.9 145 200-367 61-223 (546)
468 PRK10416 signal recognition pa 85.7 2.2 4.7E-05 43.0 6.7 55 327-381 195-256 (318)
469 KOG0741 AAA+-type ATPase [Post 85.7 3.6 7.7E-05 43.3 8.2 19 326-344 596-614 (744)
470 TIGR00614 recQ_fam ATP-depende 85.6 3.2 6.9E-05 44.5 8.5 75 429-503 51-133 (470)
471 TIGR02639 ClpA ATP-dependent C 85.5 4.2 9.1E-05 46.2 9.7 16 217-232 486-501 (731)
472 TIGR03345 VI_ClpV1 type VI sec 85.5 2.5 5.4E-05 48.7 7.9 15 218-232 599-613 (852)
473 cd01131 PilT Pilus retraction 85.5 0.97 2.1E-05 42.1 3.9 14 218-231 4-17 (198)
474 PRK14970 DNA polymerase III su 85.3 5.1 0.00011 41.4 9.6 15 217-231 41-55 (367)
475 TIGR01243 CDC48 AAA family ATP 85.3 3.6 7.7E-05 46.9 9.1 18 214-231 211-228 (733)
476 TIGR02397 dnaX_nterm DNA polym 85.2 1.7 3.8E-05 44.5 6.1 15 217-231 38-52 (355)
477 COG0542 clpA ATP-binding subun 85.2 4.6 0.0001 45.2 9.4 38 217-266 523-560 (786)
478 TIGR02767 TraG-Ti Ti-type conj 85.1 0.85 1.8E-05 50.1 3.8 50 216-278 212-261 (623)
479 PRK06620 hypothetical protein; 85.0 6.5 0.00014 37.1 9.3 106 257-372 17-126 (214)
480 KOG2543 Origin recognition com 85.0 9.2 0.0002 38.7 10.4 48 327-374 114-163 (438)
481 PRK06305 DNA polymerase III su 85.0 4 8.7E-05 43.3 8.7 16 217-232 41-56 (451)
482 cd01127 TrwB Bacterial conjuga 84.8 0.94 2E-05 47.5 3.9 50 209-269 36-85 (410)
483 KOG0745 Putative ATP-dependent 84.8 0.93 2E-05 46.2 3.6 28 214-243 225-252 (564)
484 KOG0744 AAA+-type ATPase [Post 84.8 5.6 0.00012 39.2 8.6 113 216-344 178-325 (423)
485 PRK13880 conjugal transfer cou 84.6 0.84 1.8E-05 50.6 3.5 45 216-273 176-220 (636)
486 COG2109 BtuR ATP:corrinoid ade 84.6 14 0.0003 33.6 10.4 53 327-379 121-175 (198)
487 PRK08840 replicative DNA helic 84.6 12 0.00027 39.7 12.2 116 213-341 215-342 (464)
488 PRK07004 replicative DNA helic 84.5 5.8 0.00012 42.3 9.6 27 213-240 211-237 (460)
489 cd01128 rho_factor Transcripti 84.3 1.9 4E-05 41.7 5.3 20 212-231 13-32 (249)
490 PRK11634 ATP-dependent RNA hel 83.9 4.7 0.0001 44.7 9.0 71 429-503 74-155 (629)
491 COG0466 Lon ATP-dependent Lon 83.9 3 6.6E-05 45.5 7.1 64 289-357 383-446 (782)
492 PRK08506 replicative DNA helic 83.9 8.3 0.00018 41.2 10.6 113 214-341 191-315 (472)
493 KOG0730 AAA+-type ATPase [Post 83.9 5.9 0.00013 42.9 9.1 43 330-372 529-581 (693)
494 KOG1132 Helicase of the DEAD s 83.8 24 0.00052 39.7 13.8 21 514-535 700-721 (945)
495 TIGR02030 BchI-ChlI magnesium 83.8 3.9 8.5E-05 41.4 7.6 25 215-241 25-49 (337)
496 COG1618 Predicted nucleotide k 83.8 1.7 3.7E-05 38.3 4.2 114 217-353 7-127 (179)
497 COG1122 CbiO ABC-type cobalt t 83.7 2.4 5.3E-05 40.5 5.8 32 329-360 157-188 (235)
498 cd03289 ABCC_CFTR2 The CFTR su 83.7 1.5 3.3E-05 43.2 4.5 41 326-367 154-194 (275)
499 cd03240 ABC_Rad50 The catalyti 83.6 2.5 5.5E-05 39.5 5.9 43 326-368 137-182 (204)
500 PRK08058 DNA polymerase III su 83.6 7.9 0.00017 39.3 9.8 41 326-368 108-148 (329)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-76 Score=597.81 Aligned_cols=387 Identities=51% Similarity=0.862 Sum_probs=365.7
Q ss_pred ccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEE
Q 039378 181 SFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCL 258 (600)
Q Consensus 181 ~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~l 258 (600)
.|..++++..+...++ ||..|||||.++||.++.|+|++..|.||||||++|++|++.++..... ...+..+|++|
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~--~~~~~~~P~vL 169 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQG--KLSRGDGPIVL 169 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccc--cccCCCCCeEE
Confidence 7999999999988887 9999999999999999999999999999999999999999999987421 23355689999
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccc
Q 039378 259 VLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEAD 338 (600)
Q Consensus 259 iv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah 338 (600)
|++||||||.|+...+.+++..+.+++.++|||.....|...+..+++|+|+||++|.++++.+.+.++++.|+|+||||
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD 249 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD 249 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCChHHHHHHHHhc-CcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCc-ccccCCCeeEEEEEecCcchHHH
Q 039378 339 RMLDMGFEEPVRFILSKI-SLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSE-DLAANHDVMQIVEVLDDRSRDQR 416 (600)
Q Consensus 339 ~l~~~~~~~~~~~il~~~-~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 416 (600)
+|+++||..+++.|+..+ +..+|++++|||||..++.++..|+. ++..+.++.. ....+..+.++...++...+...
T Consensus 250 rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~ 328 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCDETAKLRK 328 (519)
T ss_pred hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcCHHHHHHH
Confidence 999999999999999999 66669999999999999999999996 8998888865 66778889999999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCC
Q 039378 417 LLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496 (600)
Q Consensus 417 l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~ 496 (600)
+..+|..+.....+++||||+++..|+.|+..|+..++++..|||+.+|.+|..+++.|++|++.||||||+++||||||
T Consensus 329 l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~ 408 (519)
T KOG0331|consen 329 LGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVP 408 (519)
T ss_pred HHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCc
Confidence 99999998866788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcHHHHhhhhhhhhhh
Q 039378 497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVKKKE 570 (600)
Q Consensus 497 ~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l~~~~~~~~~~~ 570 (600)
+|++|||||+|.++++|+||+|||||+|+.|.+++||+..+......+++++++.++.+|+.+..++.....+.
T Consensus 409 dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~~~~ 482 (519)
T KOG0331|consen 409 DVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVSGSGG 482 (519)
T ss_pred cccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987665443
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-74 Score=543.15 Aligned_cols=365 Identities=39% Similarity=0.620 Sum_probs=342.3
Q ss_pred ccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCC
Q 039378 177 KALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN 254 (600)
Q Consensus 177 ~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~ 254 (600)
....+|.++++.+.+++++. +|..||++|+++||.++.|+|+|+.|.||||||.+|++|++++++..+. .
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~--------~ 129 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK--------L 129 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC--------C
Confidence 45678999999999999998 9999999999999999999999999999999999999999999999765 4
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHH-ccCCCccceEEEE
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIE-MNVCHLSEVSFVV 333 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~-~~~~~l~~~~~lV 333 (600)
+++||++||||||.|+.+.|..++...|+++.++.||.+...+...+...++|+|+|||+|++++. ...+.+..++++|
T Consensus 130 ~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 130 FFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred ceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHh
Confidence 889999999999999999999999999999999999999999999999999999999999999998 5678899999999
Q ss_pred EcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcch
Q 039378 334 LDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSR 413 (600)
Q Consensus 334 iDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (600)
+||||+++++.|...+.+|+..++..+|+++||||||..+.++....+ .+|..+.+... ......+.+.+.+++...+
T Consensus 210 lDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl-~~p~~v~~s~k-y~tv~~lkQ~ylfv~~k~K 287 (476)
T KOG0330|consen 210 LDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASL-DNPVKVAVSSK-YQTVDHLKQTYLFVPGKDK 287 (476)
T ss_pred hchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhcc-CCCeEEeccch-hcchHHhhhheEecccccc
Confidence 999999999999999999999999999999999999999999987777 67777776554 3455567888889999999
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCC
Q 039378 414 DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGL 493 (600)
Q Consensus 414 ~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gl 493 (600)
..++++++.... +..+||||++...+..++-.|+..|+.+..+||.|++..|.-.++.|++|.+.||||||+++||+
T Consensus 288 ~~yLV~ll~e~~---g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGL 364 (476)
T KOG0330|consen 288 DTYLVYLLNELA---GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGL 364 (476)
T ss_pred chhHHHHHHhhc---CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccC
Confidence 999999998763 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCC
Q 039378 494 DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQV 554 (600)
Q Consensus 494 di~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ 554 (600)
|||.|++|||||+|.+..+|+||+||+||+|++|.+++|++..|...+.+|...++.....
T Consensus 365 Dip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 365 DIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred CCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999998876644
No 3
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-72 Score=544.85 Aligned_cols=360 Identities=37% Similarity=0.555 Sum_probs=329.1
Q ss_pred ccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCce
Q 039378 179 LKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPL 256 (600)
Q Consensus 179 ~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~ 256 (600)
..+|.+++|+..++.++. ||..|||||..+||..+-|+|++.||.||||||.+|++|+|.+++-.+.+. ...+
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~-----~~TR 254 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKV-----AATR 254 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccC-----ccee
Confidence 468999999999999997 999999999999999999999999999999999999999999999887643 3567
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc-CCCccceEEEEEc
Q 039378 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN-VCHLSEVSFVVLD 335 (600)
Q Consensus 257 ~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~lViD 335 (600)
|||+||||+|+.|++.+..+++.++.+.+.+.+||.+...|...|++++||||+|||+|++++.+. .++++++.++|+|
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLD 334 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999764 5789999999999
Q ss_pred ccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecC--cch
Q 039378 336 EADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDD--RSR 413 (600)
Q Consensus 336 Eah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~ 413 (600)
|||+|++.+|..++..|+..++..+|+++|||||+..+..++...+ ..|+.+.+++.........+.++...+. ..+
T Consensus 335 EADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL-~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dR 413 (691)
T KOG0338|consen 335 EADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSL-NKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDR 413 (691)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhc-CCCeEEEeCCccccchhhhHHHheecccccccc
Confidence 9999999999999999999999999999999999999999999888 8999999988765554444444444332 234
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCC
Q 039378 414 DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGL 493 (600)
Q Consensus 414 ~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gl 493 (600)
...+..++.... ..++|||+.++..|++|.-+|..+|+++.-+||.++|.+|...++.|+.+++.||||||+++|||
T Consensus 414 ea~l~~l~~rtf---~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGL 490 (691)
T KOG0338|consen 414 EAMLASLITRTF---QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGL 490 (691)
T ss_pred HHHHHHHHHHhc---ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccC
Confidence 455555555443 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHH
Q 039378 494 DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNV 547 (600)
Q Consensus 494 di~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~ 547 (600)
||++|.+||||++|.+...|+||+||++|+|+.|.+++|+...|..+++.|+..
T Consensus 491 DI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 491 DIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred CccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999888766
No 4
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-70 Score=517.75 Aligned_cols=395 Identities=44% Similarity=0.705 Sum_probs=361.5
Q ss_pred cccchhcccccccc-CCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCc
Q 039378 171 VKEAKYKALKSFTE-SKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGK 247 (600)
Q Consensus 171 ~~~~~~~~~~~~~~-~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~ 247 (600)
.+.+.|.|...|++ +.-.+.+++.++ ||.+|+|+|.++||.+++|.|++..|.||+|||++|++|.+.++...+...
T Consensus 210 ekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~ 289 (629)
T KOG0336|consen 210 EKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRR 289 (629)
T ss_pred CcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhh
Confidence 34456778888865 467788888887 999999999999999999999999999999999999999999988776533
Q ss_pred cCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCcc
Q 039378 248 AVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLS 327 (600)
Q Consensus 248 ~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~ 327 (600)
+...+|.+|+++|||+|+.|+.-.+.++. +.+++.+++|||.+...++..++.+.+|+++||++|.++...+.+++.
T Consensus 290 --~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~ 366 (629)
T KOG0336|consen 290 --EQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLA 366 (629)
T ss_pred --hccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeee
Confidence 35678999999999999999988877765 357899999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEE
Q 039378 328 EVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEV 407 (600)
Q Consensus 328 ~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 407 (600)
++.|||+||||+|+++||..++..|+-.+++.+|+++.|||||+.++.++..|+ .+|+.+.++..++.....+.+.+..
T Consensus 367 siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~-Kep~~v~vGsLdL~a~~sVkQ~i~v 445 (629)
T KOG0336|consen 367 SITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYL-KEPMIVYVGSLDLVAVKSVKQNIIV 445 (629)
T ss_pred eeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhh-hCceEEEecccceeeeeeeeeeEEe
Confidence 999999999999999999999999999999999999999999999999999999 8999999999999988889998866
Q ss_pred ecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc
Q 039378 408 LDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD 487 (600)
Q Consensus 408 ~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~ 487 (600)
..+..+...+..++..+ +...++||||..+..|+.|..-|.-.|+..-.|||+-.+.+|+..++.|++|.++||||||
T Consensus 446 ~~d~~k~~~~~~f~~~m--s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTD 523 (629)
T KOG0336|consen 446 TTDSEKLEIVQFFVANM--SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATD 523 (629)
T ss_pred cccHHHHHHHHHHHHhc--CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEec
Confidence 66666665555555544 3467999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcHHHHhhhhhhh
Q 039378 488 VAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 567 (600)
Q Consensus 488 ~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l~~~~~~~~ 567 (600)
+++||||++++.||+|||+|.+++.|+||+||+||+|+.|.+++|++.+|-.+...|+++|.++.|.+|+.|..+++.++
T Consensus 524 laSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk 603 (629)
T KOG0336|consen 524 LASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYK 603 (629)
T ss_pred hhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhhc
Q 039378 568 KKES 571 (600)
Q Consensus 568 ~~~~ 571 (600)
-...
T Consensus 604 ~~q~ 607 (629)
T KOG0336|consen 604 LKQS 607 (629)
T ss_pred hhhc
Confidence 5433
No 5
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4e-69 Score=527.37 Aligned_cols=384 Identities=42% Similarity=0.669 Sum_probs=353.6
Q ss_pred hhccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCcc-CCC
Q 039378 175 KYKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKA-VGK 251 (600)
Q Consensus 175 ~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~-~~~ 251 (600)
.+.|+.+|++.++|..++..+. ||..|+|+|+++||..++.+|+|+.|+||||||++|++|++..+...++... .+.
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 4789999999999999999887 9999999999999999999999999999999999999999999888876544 356
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEE
Q 039378 252 RVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331 (600)
Q Consensus 252 ~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~ 331 (600)
..+|+++|++|||+|++|+.++-.+++...+++++.++||....++--.+..||+|+|+||++|++.+.+..+.+..+.+
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qcty 399 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTY 399 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCce
Confidence 67999999999999999999999999999999999999999999998888999999999999999999999889999999
Q ss_pred EEEcccchhhcCCChHHHHHHHHhcCcC-------------------------CcEEEEeccCChhHHHHHHHhcCCCCe
Q 039378 332 VVLDEADRMLDMGFEEPVRFILSKISLA-------------------------RQMVMFSATWPIEVHKLAEEYMDPNPV 386 (600)
Q Consensus 332 lViDEah~l~~~~~~~~~~~il~~~~~~-------------------------~q~i~~SATl~~~~~~~~~~~~~~~~~ 386 (600)
||+||||+|+++||.+.+..++..++.. +|+++||||+|+.+..+++.|| ..|+
T Consensus 400 vvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~yl-r~pv 478 (673)
T KOG0333|consen 400 VVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYL-RRPV 478 (673)
T ss_pred EeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHh-hCCe
Confidence 9999999999999999999999988632 5899999999999999999999 8899
Q ss_pred EEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHH
Q 039378 387 KVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQH 466 (600)
Q Consensus 387 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~ 466 (600)
.+.++..... ...+.|.+......++..+|..++... ...++|||+|+++.|+.|++.|...|+++..|||+-++.
T Consensus 479 ~vtig~~gk~-~~rveQ~v~m~~ed~k~kkL~eil~~~---~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qe 554 (673)
T KOG0333|consen 479 VVTIGSAGKP-TPRVEQKVEMVSEDEKRKKLIEILESN---FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQE 554 (673)
T ss_pred EEEeccCCCC-ccchheEEEEecchHHHHHHHHHHHhC---CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHH
Confidence 9998887643 455778888888888888888877764 367999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHH
Q 039378 467 ERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546 (600)
Q Consensus 467 ~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~ 546 (600)
+|..++..|++|...||||||+++||||||+|.+|||||++.++.+|.||||||||+|+.|.+++|+++.|...+.+|..
T Consensus 555 QRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq 634 (673)
T KOG0333|consen 555 QRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQ 634 (673)
T ss_pred HHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HhcCCCcHHHHhhh
Q 039378 547 VLR-EARQVVPDALLKFG 563 (600)
Q Consensus 547 ~l~-~~~~~ip~~l~~~~ 563 (600)
.|. ......|+.+-...
T Consensus 635 ~l~es~~s~~P~Ela~h~ 652 (673)
T KOG0333|consen 635 ALRESVKSHCPPELANHP 652 (673)
T ss_pred HHHHhhhccCChhhccCh
Confidence 887 45677888776543
No 6
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=6e-68 Score=567.40 Aligned_cols=401 Identities=48% Similarity=0.758 Sum_probs=362.8
Q ss_pred hccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCC
Q 039378 176 YKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRV 253 (600)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~ 253 (600)
+.++.+|.++++++.+++.+. ||.+|||+|.++||.++.|+|+|++||||||||++|++|++.++...+.. ....
T Consensus 126 p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~---~~~~ 202 (545)
T PTZ00110 126 PKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL---RYGD 202 (545)
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc---cCCC
Confidence 567889999999999999987 99999999999999999999999999999999999999999998765321 1234
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEE
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVV 333 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 333 (600)
+|++|||+|||+||.|+.+.+..++...++++.+++||.....+...+..+++|+|+||++|.+++......+.++++||
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lV 282 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLV 282 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEE
Confidence 78899999999999999999999998888999999999999888888999999999999999999998888899999999
Q ss_pred EcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcch
Q 039378 334 LDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSR 413 (600)
Q Consensus 334 iDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (600)
|||||+|++++|...+..++..++..+|+++||||+|..+..+...++...++.+.++.........+.+.+..+....+
T Consensus 283 iDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k 362 (545)
T PTZ00110 283 LDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEK 362 (545)
T ss_pred eehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhH
Confidence 99999999999999999999999999999999999999999999888866788887776555555667777777777777
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCC
Q 039378 414 DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGL 493 (600)
Q Consensus 414 ~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gl 493 (600)
...+..++..+.. ...++||||+++..++.|+..|...++.+..+||++++.+|..+++.|++|..+|||||+++++||
T Consensus 363 ~~~L~~ll~~~~~-~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 363 RGKLKMLLQRIMR-DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441 (545)
T ss_pred HHHHHHHHHHhcc-cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCC
Confidence 7888888876643 467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcHHHHhhhhhhh-hhhcc
Q 039378 494 DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK-KKESK 572 (600)
Q Consensus 494 di~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l~~~~~~~~-~~~~~ 572 (600)
|+|+|++|||||+|.++..|+||+||+||.|+.|.|++|+++.+...+..|+++|++.++.+|++|.+++.... .++.+
T Consensus 442 Di~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~~~~~~~ 521 (545)
T PTZ00110 442 DVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERSNGTERR 521 (545)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987665 23445
Q ss_pred cccccccc
Q 039378 573 LYGAHFRE 580 (600)
Q Consensus 573 ~~~~~~~~ 580 (600)
.++.++++
T Consensus 522 ~~~~~~~~ 529 (545)
T PTZ00110 522 RWGGYGRF 529 (545)
T ss_pred cccCCCCC
Confidence 55555554
No 7
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-66 Score=548.31 Aligned_cols=370 Identities=44% Similarity=0.694 Sum_probs=332.4
Q ss_pred cccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceE
Q 039378 180 KSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257 (600)
Q Consensus 180 ~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~ 257 (600)
..|.++++++.++.++. ||..|||+|.++||.++.|+|+++.|+||||||++|++|++.++..... ....+ +
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~-----~~~~~-a 102 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE-----RKYVS-A 102 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc-----cCCCc-e
Confidence 67999999999999997 9999999999999999999999999999999999999999999664211 01112 8
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCC-CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcc
Q 039378 258 LVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDE 336 (600)
Q Consensus 258 liv~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDE 336 (600)
||++||||||.|+++.+..++... ++++.+++||.+...+...+..+++|||+|||||++++.+..+.++.+.++|+||
T Consensus 103 Lil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDE 182 (513)
T COG0513 103 LILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDE 182 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEecc
Confidence 999999999999999999999988 7999999999999999999998999999999999999999999999999999999
Q ss_pred cchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCccc-ccCCCeeEEEEEecCcc-hH
Q 039378 337 ADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDL-AANHDVMQIVEVLDDRS-RD 414 (600)
Q Consensus 337 ah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~-~~ 414 (600)
||+|+++||...+..|+..++..+|+++||||+|..+..+...++ .+|..+.+..... .....+.+++..+.... +.
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l-~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~ 261 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYL-NDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKL 261 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHc-cCCcEEEEccccccccccCceEEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999999999999 5888888774332 25566788888887655 66
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCC
Q 039378 415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494 (600)
Q Consensus 415 ~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gld 494 (600)
..+..++... ...++||||+++..++.|+..|...|+++..|||+|++.+|.++++.|++|..+||||||+++||||
T Consensus 262 ~~L~~ll~~~---~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiD 338 (513)
T COG0513 262 ELLLKLLKDE---DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLD 338 (513)
T ss_pred HHHHHHHhcC---CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCC
Confidence 6666666654 3457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCC-cHhHHHHHHHHHHHh---cCCCcHHH
Q 039378 495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNH-NKALAGELVNVLREA---RQVVPDAL 559 (600)
Q Consensus 495 i~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~-d~~~~~~i~~~l~~~---~~~ip~~l 559 (600)
||++++|||||+|.+++.|+||+|||||+|+.|.+++|+++. +...+..|...+... ...+|...
T Consensus 339 i~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~ 407 (513)
T COG0513 339 IPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDE 407 (513)
T ss_pred ccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcch
Confidence 999999999999999999999999999999999999999986 888888888887654 23455433
No 8
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-66 Score=513.98 Aligned_cols=387 Identities=41% Similarity=0.686 Sum_probs=350.9
Q ss_pred hccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCC-
Q 039378 176 YKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKR- 252 (600)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~- 252 (600)
|..+..|.+..+...+..++. +|..|||+|+.+||.+..|+|+++||+||||||.+|++|++.+++...........
T Consensus 70 p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~ 149 (482)
T KOG0335|consen 70 PPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGG 149 (482)
T ss_pred CCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCC
Confidence 445568888888888888876 99999999999999999999999999999999999999999999987553322222
Q ss_pred -CCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEE
Q 039378 253 -VNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331 (600)
Q Consensus 253 -~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~ 331 (600)
..|++||++|||+||.|++++.+++....+++++.+|||.+...+...+..+|+|+|+|||+|.++++.+.+.|..+++
T Consensus 150 ~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~ 229 (482)
T KOG0335|consen 150 GVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKF 229 (482)
T ss_pred CCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcE
Confidence 3699999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccchhhc-CCChHHHHHHHHhcCc----CCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEE
Q 039378 332 VVLDEADRMLD-MGFEEPVRFILSKISL----ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVE 406 (600)
Q Consensus 332 lViDEah~l~~-~~~~~~~~~il~~~~~----~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 406 (600)
+||||||+|++ ++|.+.++.|+..... .+|+++||||+|..+..++..++..+.+.+.++... ....++.+...
T Consensus 230 ~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg-~~~~ni~q~i~ 308 (482)
T KOG0335|consen 230 LVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG-STSENITQKIL 308 (482)
T ss_pred EEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec-cccccceeEee
Confidence 99999999999 9999999999988865 679999999999999998888886556666666544 44566778888
Q ss_pred EecCcchHHHHHHHHHHHhhc-CC-----CeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q 039378 407 VLDDRSRDQRLLALLEKYHKS-QR-----NRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTC 480 (600)
Q Consensus 407 ~~~~~~~~~~l~~~l~~~~~~-~~-----~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~ 480 (600)
.+....+..++++++...... .. .+++|||.+++.+..|+..|...++++..+||...+.+|.+.+..|+.|.+
T Consensus 309 ~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~ 388 (482)
T KOG0335|consen 309 FVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKA 388 (482)
T ss_pred eecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCc
Confidence 888888888898888765422 12 389999999999999999999999999999999999999999999999999
Q ss_pred CEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcHHHH
Q 039378 481 PLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALL 560 (600)
Q Consensus 481 ~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l~ 560 (600)
.+||||++++||||||+|+|||+||+|.+..+|+||+|||||.|..|.++.|+...+..+.+.|+++|.++++.+|+||.
T Consensus 389 pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~ 468 (482)
T KOG0335|consen 389 PVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLS 468 (482)
T ss_pred ceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh
Q 039378 561 KFG 563 (600)
Q Consensus 561 ~~~ 563 (600)
++.
T Consensus 469 ~~~ 471 (482)
T KOG0335|consen 469 ELS 471 (482)
T ss_pred hhh
Confidence 844
No 9
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-65 Score=498.55 Aligned_cols=384 Identities=43% Similarity=0.703 Sum_probs=354.6
Q ss_pred chhccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCC
Q 039378 174 AKYKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGK 251 (600)
Q Consensus 174 ~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~ 251 (600)
..+.++.+|...++...|..++. .|.+|||+|.+++|..+.|+|++..|.||||||.+|+.|++.+++..+.-. .
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~---~ 293 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK---P 293 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc---C
Confidence 34788999999999999999887 899999999999999999999999999999999999999999998876532 3
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEE
Q 039378 252 RVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331 (600)
Q Consensus 252 ~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~ 331 (600)
..+|..||+||||+||.|++.+++++++..+++++++|||.+.-.|...|..++.||||||+||++++.....++.++++
T Consensus 294 g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 294 GEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred CCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCc
Q 039378 332 VVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDR 411 (600)
Q Consensus 332 lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 411 (600)
|||||||+|.++||..+++.|..++++.+|+|+||||++..+..+++.+| ..|+.++.+... ..+..+.|.+.++...
T Consensus 374 LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L-~dpVrvVqg~vg-ean~dITQ~V~V~~s~ 451 (731)
T KOG0339|consen 374 LVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDIL-SDPVRVVQGEVG-EANEDITQTVSVCPSE 451 (731)
T ss_pred EEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHh-cCCeeEEEeehh-ccccchhheeeeccCc
Confidence 99999999999999999999999999999999999999999999999999 788888877543 3456677777776544
Q ss_pred -chHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccc
Q 039378 412 -SRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAA 490 (600)
Q Consensus 412 -~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~ 490 (600)
.++..|+.-|..+. ..+++|||+.-...++.++..|...++++..+||+|.+.+|.+++..|+.+...|||+||+++
T Consensus 452 ~~Kl~wl~~~L~~f~--S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaa 529 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFS--SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAA 529 (731)
T ss_pred HHHHHHHHHHhhhhc--cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhh
Confidence 45555555554442 367999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcHHHHhhhh
Q 039378 491 RGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGT 564 (600)
Q Consensus 491 ~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l~~~~~ 564 (600)
||+||+.+..|||||+-.+++.|.||+||+||+|.+|.+|+|+++.|..+...|++.|..++|.+|+.|.+|+-
T Consensus 530 rgldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlam 603 (731)
T KOG0339|consen 530 RGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAM 603 (731)
T ss_pred cCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998763
No 10
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-65 Score=465.96 Aligned_cols=371 Identities=32% Similarity=0.551 Sum_probs=339.8
Q ss_pred hccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCC
Q 039378 176 YKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRV 253 (600)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~ 253 (600)
..+...|++++|..+++..++ ||.+|+.+|+.||+.++.|+|+|++|..|+|||.+|.+.+++.+.-. ..
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~--------~r 94 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS--------VR 94 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc--------cc
Confidence 467789999999999999987 99999999999999999999999999999999999988877654332 12
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEE
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVV 333 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 333 (600)
..++||++|||+||.|+.+.+..++.+.++.+....||.+..+.+..+..|.+++.+|||++.+++++..+....++++|
T Consensus 95 ~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlV 174 (400)
T KOG0328|consen 95 ETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLV 174 (400)
T ss_pred eeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcc-
Q 039378 334 LDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRS- 412 (600)
Q Consensus 334 iDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~- 412 (600)
+||||.|++.||..++-.+++.++++.|++++|||+|.++.++...|+ .+|+.+.+...+.... .+.+++.....+.
T Consensus 175 LDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfm-tdpvrilvkrdeltlE-gIKqf~v~ve~Eew 252 (400)
T KOG0328|consen 175 LDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFM-TDPVRILVKRDELTLE-GIKQFFVAVEKEEW 252 (400)
T ss_pred eccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhc-CCceeEEEecCCCchh-hhhhheeeechhhh
Confidence 999999999999999999999999999999999999999999999988 8999999988776543 3566665555443
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccC
Q 039378 413 RDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARG 492 (600)
Q Consensus 413 ~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~G 492 (600)
+...|..+...+. -...+||||++..++.|.+.|+..++.+..+||+|++++|..++..|++|+.+|||+||+.+||
T Consensus 253 KfdtLcdLYd~Lt---ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRG 329 (400)
T KOG0328|consen 253 KFDTLCDLYDTLT---ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARG 329 (400)
T ss_pred hHhHHHHHhhhhe---hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhcc
Confidence 7777777776653 5689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcHHH
Q 039378 493 LDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDAL 559 (600)
Q Consensus 493 ldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l 559 (600)
+|+|.|++|||||+|.+.+.|+||+||.||.|++|.++.|+...|...+..|.+.+.-.....|-.+
T Consensus 330 iDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nv 396 (400)
T KOG0328|consen 330 IDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNV 396 (400)
T ss_pred CCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchh
Confidence 9999999999999999999999999999999999999999999999999999999988877777654
No 11
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-67 Score=514.73 Aligned_cols=371 Identities=33% Similarity=0.510 Sum_probs=312.5
Q ss_pred ccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcC-CcEEEEecCCCCchhHhhHHHHHHHHhcccCc-----c
Q 039378 177 KALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNG-RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGK-----A 248 (600)
Q Consensus 177 ~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~-~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~-----~ 248 (600)
..+..|..+++|..++.++. ||..||+||..+||.++.| .|++..|.||||||+||.||++..++...... .
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34667888899999999997 9999999999999999999 69999999999999999999999655432211 0
Q ss_pred CCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCC---C
Q 039378 249 VGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC---H 325 (600)
Q Consensus 249 ~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~---~ 325 (600)
......|.+||++|||+||.|+.++|..+...+++++..++||.....|.+.+...++|||+||||||.++..+.. .
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 1122244599999999999999999999999999999999999999999999999999999999999999987654 4
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcC-----cCCcEEEEeccCChh---------------------HHHHHHH
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKIS-----LARQMVMFSATWPIE---------------------VHKLAEE 379 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~-----~~~q~i~~SATl~~~---------------------~~~~~~~ 379 (600)
+.+++|||+||+|+|++.||...+..++..+. ..+|+++||||++-. +..+...
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 67889999999999999999999999998875 457999999997531 2222222
Q ss_pred -hcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEE
Q 039378 380 -YMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVA 458 (600)
Q Consensus 380 -~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~ 458 (600)
.+..+|.++...+.... ...+......|+...+..++++++..+ +|++|||||++..+.+|+-+|...+++.+.
T Consensus 418 ig~~~kpkiiD~t~q~~t-a~~l~Es~I~C~~~eKD~ylyYfl~ry----PGrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 418 IGFRGKPKIIDLTPQSAT-ASTLTESLIECPPLEKDLYLYYFLTRY----PGRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred hCccCCCeeEecCcchhH-HHHHHHHhhcCCccccceeEEEEEeec----CCceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 23455555554443322 222222233345555666666666654 899999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcH
Q 039378 459 IHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNK 538 (600)
Q Consensus 459 l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~ 538 (600)
||+.|.|++|.+.+++|++....||||||+++||||||+|.|||||.+|.+.+.|+||.||++|++..|.++.|+.+.+.
T Consensus 493 LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhc
Q 039378 539 ALAGELVNVLREAR 552 (600)
Q Consensus 539 ~~~~~i~~~l~~~~ 552 (600)
..+..|+.-|....
T Consensus 573 ~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 573 GPLKKLCKTLKKKE 586 (731)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999998887643
No 12
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.9e-64 Score=537.77 Aligned_cols=383 Identities=35% Similarity=0.570 Sum_probs=341.0
Q ss_pred hccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCC
Q 039378 176 YKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRV 253 (600)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~ 253 (600)
+.++.+|.++++++.++..+. ||..|||+|.++||.++.|+|+|++||||||||++|++|++.+++....... ....
T Consensus 117 p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~-~~~~ 195 (518)
T PLN00206 117 PPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHP-SEQR 195 (518)
T ss_pred CchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccc-cccC
Confidence 578899999999999999987 9999999999999999999999999999999999999999998875432111 1235
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEE
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVV 333 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 333 (600)
++++|||+|||+||.|+.+.+..+....++++..++||.....+...+..+++|+|+||++|.+++.+....+.++++||
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lV 275 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLV 275 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEE
Confidence 78899999999999999999999998888999999999998888888888999999999999999988888899999999
Q ss_pred EcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcch
Q 039378 334 LDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSR 413 (600)
Q Consensus 334 iDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (600)
|||||+|++++|...+..++..++ .+|+++||||++..+..+...++ .++..+.++... .....+.+....+....+
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~-~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k 352 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLA-KDIILISIGNPN-RPNKAVKQLAIWVETKQK 352 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhC-CCCEEEEeCCCC-CCCcceeEEEEeccchhH
Confidence 999999999999999999988875 58999999999999998888877 677777766543 233445666666666666
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHh-CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccC
Q 039378 414 DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRR-SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARG 492 (600)
Q Consensus 414 ~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~-~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~G 492 (600)
...+..++..... ...++||||+++..++.|+..|.. .++.+..+||+|++.+|..+++.|++|+.+|||||++++||
T Consensus 353 ~~~l~~~l~~~~~-~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rG 431 (518)
T PLN00206 353 KQKLFDILKSKQH-FKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRG 431 (518)
T ss_pred HHHHHHHHHhhcc-cCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhcc
Confidence 6777777665432 246899999999999999999975 58999999999999999999999999999999999999999
Q ss_pred CCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcHHHHhhh
Q 039378 493 LDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFG 563 (600)
Q Consensus 493 ldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l~~~~ 563 (600)
||+|++++||+||+|.++.+|+||+|||||.|..|.+++|+++++...+..+++.++..++.+|++|..+.
T Consensus 432 iDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 432 VDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999865
No 13
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-65 Score=479.11 Aligned_cols=368 Identities=33% Similarity=0.476 Sum_probs=331.0
Q ss_pred ccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCC
Q 039378 177 KALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN 254 (600)
Q Consensus 177 ~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~ 254 (600)
....+|..+||.+++.+.++ ++..|||+|..|||.|+.|+|+|.+|.||||||++|.+|+++++...+. +
T Consensus 4 ~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~--------g 75 (442)
T KOG0340|consen 4 KTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY--------G 75 (442)
T ss_pred cccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC--------c
Confidence 34678999999999999987 9999999999999999999999999999999999999999999988765 5
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc----CCCccceE
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN----VCHLSEVS 330 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~----~~~l~~~~ 330 (600)
..+||++|||+||.|+.+.|..+++..++++..++||.+.-.+...+..+++|||+|||+|.+++..+ ...+.+++
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 66899999999999999999999999999999999999999999999999999999999999998765 24578999
Q ss_pred EEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecC
Q 039378 331 FVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDD 410 (600)
Q Consensus 331 ~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 410 (600)
++|+||||++++..|...+..+...+|..+|.++||||++..+..+........-.+......+......+.+.+..++.
T Consensus 156 flVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~ 235 (442)
T KOG0340|consen 156 FLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSI 235 (442)
T ss_pred eEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecch
Confidence 99999999999999999999999999999999999999999888765443322111111122334455556777888888
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccc
Q 039378 411 RSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAA 490 (600)
Q Consensus 411 ~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~ 490 (600)
..+..+++.+|..+.+...+.++||+++..++..|+..|...++.+..+||.|++++|...+.+|+++..++|||||+++
T Consensus 236 ~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAs 315 (442)
T KOG0340|consen 236 DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVAS 315 (442)
T ss_pred hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhh
Confidence 89999999999998776678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhc
Q 039378 491 RGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREAR 552 (600)
Q Consensus 491 ~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~ 552 (600)
||+|||.|+.|||||+|.+|.+|+||+||++|+|+.|.++.|+++.|...+..|.+.+...-
T Consensus 316 RGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl 377 (442)
T KOG0340|consen 316 RGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKL 377 (442)
T ss_pred cCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999888887766543
No 14
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1e-66 Score=492.16 Aligned_cols=387 Identities=39% Similarity=0.642 Sum_probs=347.0
Q ss_pred hhccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCC
Q 039378 175 KYKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKR 252 (600)
Q Consensus 175 ~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~ 252 (600)
.+.|+.+|.++.+|..+++.++ |+.+|||+|.+.||.++.|+|.|..|-||||||++|.+|++...+.....-...+.
T Consensus 165 ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~ 244 (610)
T KOG0341|consen 165 IPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARG 244 (610)
T ss_pred CCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccC
Confidence 3678999999999999999987 99999999999999999999999999999999999999999888887666666677
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhcCC------CCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCc
Q 039378 253 VNPLCLVLSPTRELADQIYDVLNDAGKP------CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHL 326 (600)
Q Consensus 253 ~~~~~liv~Ptr~La~q~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l 326 (600)
.+|..|||||+|+||.|.++.+..+... ..++..+..||....++...++.|.+|+|+||++|.+++.+...+|
T Consensus 245 EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sL 324 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSL 324 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccH
Confidence 8999999999999999999988876433 2477888999999999999999999999999999999999999999
Q ss_pred cceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEE
Q 039378 327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVE 406 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 406 (600)
.-++|+++||||+|+++||...++.|+..+...+|+++||||+|..+..+++.-+ ..|+.+.++..... +.++.+-+.
T Consensus 325 d~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSAL-VKPvtvNVGRAGAA-sldViQevE 402 (610)
T KOG0341|consen 325 DACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSAL-VKPVTVNVGRAGAA-SLDVIQEVE 402 (610)
T ss_pred HHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhc-ccceEEeccccccc-chhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988 78999999887643 333444444
Q ss_pred EecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEec
Q 039378 407 VLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486 (600)
Q Consensus 407 ~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT 486 (600)
++..+.+..++++.|+ + ...++||||..+.+++.++++|--.|+.+..+||+-++++|...++.|+.|+-.|||||
T Consensus 403 yVkqEaKiVylLeCLQ---K-T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVAT 478 (610)
T KOG0341|consen 403 YVKQEAKIVYLLECLQ---K-TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVAT 478 (610)
T ss_pred HHHhhhhhhhHHHHhc---c-CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEe
Confidence 4444444444444333 2 36799999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCc-HhHHHHHHHHHHHhcCCCcHHHHhhhhh
Q 039378 487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN-KALAGELVNVLREARQVVPDALLKFGTH 565 (600)
Q Consensus 487 ~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d-~~~~~~i~~~l~~~~~~ip~~l~~~~~~ 565 (600)
|+++.|+|+|++.||||||+|..++.|+||+||+||.|++|.+.+|+.... ...+-++...|.+++|.+|+.|..++..
T Consensus 479 DVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~ 558 (610)
T KOG0341|consen 479 DVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGP 558 (610)
T ss_pred cchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999764 5567899999999999999999988765
Q ss_pred hh
Q 039378 566 VK 567 (600)
Q Consensus 566 ~~ 567 (600)
..
T Consensus 559 ~E 560 (610)
T KOG0341|consen 559 ME 560 (610)
T ss_pred cc
Confidence 44
No 15
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2e-64 Score=492.53 Aligned_cols=363 Identities=35% Similarity=0.500 Sum_probs=328.3
Q ss_pred cccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCc
Q 039378 178 ALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255 (600)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~ 255 (600)
....|.+..|++..+.+++ ||..+|++|...|+.++.|+|+++.|.||+|||++|+||++..+.+.+... ..+.
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~----r~~~ 155 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP----RNGT 155 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC----CCCe
Confidence 3456788899999999997 999999999999999999999999999999999999999999998876532 2466
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccC-CCccceEEEE
Q 039378 256 LCLVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNV-CHLSEVSFVV 333 (600)
Q Consensus 256 ~~liv~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~-~~l~~~~~lV 333 (600)
.+|||||||+||.|++.+++++...+ ++.+..+.||.+.......+.++++|+|+|||||.+++++.. +....++++|
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lv 235 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLV 235 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeE
Confidence 79999999999999999999999888 899999999999999888888899999999999999998754 4566778999
Q ss_pred EcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCccc-ccCCCeeEEEEEecCcc
Q 039378 334 LDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDL-AANHDVMQIVEVLDDRS 412 (600)
Q Consensus 334 iDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~ 412 (600)
+||||+++++||...+..|+..++..+|+++||||.|..++.++...+..++..+.+..... .....+.|.+..++...
T Consensus 236 lDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~ 315 (543)
T KOG0342|consen 236 LDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS 315 (543)
T ss_pred eecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc
Confidence 99999999999999999999999999999999999999999999999988888887765443 33445667677777777
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccC
Q 039378 413 RDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARG 492 (600)
Q Consensus 413 ~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~G 492 (600)
+...+..+++.... ..++||||+|+..+..++..|....++|..|||+++|..|..+...|+..+.-||||||+++||
T Consensus 316 ~f~ll~~~LKk~~~--~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARG 393 (543)
T KOG0342|consen 316 RFSLLYTFLKKNIK--RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARG 393 (543)
T ss_pred hHHHHHHHHHHhcC--CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhcc
Confidence 76666777766543 3799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHH
Q 039378 493 LDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546 (600)
Q Consensus 493 ldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~ 546 (600)
+|+|+|++||+||+|.++.+|+||+|||||.|..|.++.++.+++..+++.|..
T Consensus 394 lD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 394 LDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998888763
No 16
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-64 Score=465.93 Aligned_cols=367 Identities=32% Similarity=0.539 Sum_probs=340.8
Q ss_pred cccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceE
Q 039378 180 KSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257 (600)
Q Consensus 180 ~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~ 257 (600)
..|+++.|...++..+. ||..|+|+|.++||.++.|+|+++.|..|+|||.+|++|++..+.... ...++
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~--------~~IQ~ 156 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK--------NVIQA 156 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc--------cceeE
Confidence 46899999999998875 999999999999999999999999999999999999999998865432 24568
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEccc
Q 039378 258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEA 337 (600)
Q Consensus 258 liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEa 337 (600)
+|++|||+||.|+.+.+.++++.+++.+...+||.+.++.+..+....+++|+||||+++++.++...+++..++|+|||
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred chhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHH
Q 039378 338 DRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRL 417 (600)
Q Consensus 338 h~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 417 (600)
|.|++..|...++.++..+|..+|++++|||+|..+..+..+++ .+|..|....+ -....+.+++.++....+...+
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l-~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCL 313 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHL-KKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCL 313 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhc-cCcceeehhhh--hhhcchhhheeeechhhhhhhH
Confidence 99999999999999999999999999999999999999999999 78888876654 2345677888888888888888
Q ss_pred HHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCC
Q 039378 418 LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497 (600)
Q Consensus 418 ~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~ 497 (600)
..++..+. -...||||||...++.|++.+.+.|+.+..+|+.|.+..|.+++..|++|.++.|||||.+.||||+++
T Consensus 314 ntLfskLq---INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqa 390 (459)
T KOG0326|consen 314 NTLFSKLQ---INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQA 390 (459)
T ss_pred HHHHHHhc---ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccce
Confidence 77777663 567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcHHHH
Q 039378 498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALL 560 (600)
Q Consensus 498 v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l~ 560 (600)
+++|||||+|.++++|+||+||.||.|..|.++.+++-+|...+.+|.+-|.....++|..+.
T Consensus 391 vNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 391 VNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred eeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 999999999999999999999999999999999999999999999999999988888886654
No 17
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.8e-62 Score=511.19 Aligned_cols=366 Identities=37% Similarity=0.548 Sum_probs=318.7
Q ss_pred cccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceE
Q 039378 180 KSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257 (600)
Q Consensus 180 ~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~ 257 (600)
..|++++|++.++.++. ||..|+|+|.++||.+++|+|++++||||||||++|++|++..++..+.... ....++++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~-~~~~~~~~ 86 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPED-RKVNQPRA 86 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccc-cccCCceE
Confidence 57999999999999987 9999999999999999999999999999999999999999999886543211 11346889
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEccc
Q 039378 258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEA 337 (600)
Q Consensus 258 liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEa 337 (600)
|||+|||+||.|+++.+..+....++++..++||.....+...+..+++|+|+||++|.+++....+.+.++++||||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999998899999999999888888888888999999999999999888888999999999999
Q ss_pred chhhcCCChHHHHHHHHhcCc--CCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHH
Q 039378 338 DRMLDMGFEEPVRFILSKISL--ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ 415 (600)
Q Consensus 338 h~l~~~~~~~~~~~il~~~~~--~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (600)
|+|++++|...+..++..++. .++.++||||++..+..+...++ .+|..+.+..... ....+.+.........+..
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~-~~p~~i~v~~~~~-~~~~i~~~~~~~~~~~k~~ 244 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHM-NNPEYVEVEPEQK-TGHRIKEELFYPSNEEKMR 244 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHC-CCCEEEEEcCCCc-CCCceeEEEEeCCHHHHHH
Confidence 999999999999999988874 45789999999999998888887 5677766654432 2233444444444444444
Q ss_pred HHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCC
Q 039378 416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495 (600)
Q Consensus 416 ~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi 495 (600)
.+..++.. ....++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||++++||||+
T Consensus 245 ~l~~ll~~---~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 245 LLQTLIEE---EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHh---cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc
Confidence 45444433 346789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHh
Q 039378 496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREA 551 (600)
Q Consensus 496 ~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~ 551 (600)
|++++||+||+|.++..|+||+||+||.|+.|.|++|+++.+...+..|...+...
T Consensus 322 p~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 322 PAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred cccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999988888887666544
No 18
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-62 Score=472.94 Aligned_cols=354 Identities=33% Similarity=0.520 Sum_probs=308.0
Q ss_pred ccccCC--CCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCce
Q 039378 181 SFTESK--LPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPL 256 (600)
Q Consensus 181 ~~~~~~--l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~ 256 (600)
.|++++ |.+++++++. ||...||+|..+||.++.++||++.|+||||||+||++|++..+......... ....
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~---~~vg 81 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPP---GQVG 81 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCc---ccee
Confidence 455554 4599999986 99999999999999999999999999999999999999999888665332111 1235
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCC-CCceEEEEeCCCChHHHHHHHh-cCCcEEEEchHHHHHHHHccC--CCccceEEE
Q 039378 257 CLVLSPTRELADQIYDVLNDAGKP-CGVKSVCVYGGTSKQPQITALR-SGVDIVIGTPGRLIDLIEMNV--CHLSEVSFV 332 (600)
Q Consensus 257 ~liv~Ptr~La~q~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~--~~l~~~~~l 332 (600)
+|||+||||||.|+.+++..+... .++.+.+++||.........++ .+++|+|+|||||.+++.+.. +.+.++.+|
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~L 161 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEIL 161 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceE
Confidence 899999999999999999987765 5788999999988888877766 468999999999999998754 345599999
Q ss_pred EEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccc-cCCCeeEEEEEecCc
Q 039378 333 VLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLA-ANHDVMQIVEVLDDR 411 (600)
Q Consensus 333 ViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~ 411 (600)
|+||||+++++||...+..|+..+|.++++-+||||.+..+..+....+ .+|+.+.+...... .+.....++..+...
T Consensus 162 VLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGL-RNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~ 240 (567)
T KOG0345|consen 162 VLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGL-RNPVRVSVKEKSKSATPSSLALEYLVCEAD 240 (567)
T ss_pred EecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhc-cCceeeeecccccccCchhhcceeeEecHH
Confidence 9999999999999999999999999999999999999999999999888 88999888765532 334456677777777
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecccc
Q 039378 412 SRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS--GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVA 489 (600)
Q Consensus 412 ~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~ 489 (600)
.+...++.++.. ....+.|||.+|+..++.....|... ...++.+||.|.+..|.++++.|......+|+|||++
T Consensus 241 eK~~~lv~~L~~---~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVa 317 (567)
T KOG0345|consen 241 EKLSQLVHLLNN---NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVA 317 (567)
T ss_pred HHHHHHHHHHhc---cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhh
Confidence 777777777765 34679999999999999999888765 6789999999999999999999999888999999999
Q ss_pred ccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHH
Q 039378 490 ARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALA 541 (600)
Q Consensus 490 ~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~ 541 (600)
+||||||++++||+||+|.++..|+||+|||||.|+.|.+++|+.+.+..+.
T Consensus 318 ARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYv 369 (567)
T KOG0345|consen 318 ARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYV 369 (567)
T ss_pred hccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHH
Confidence 9999999999999999999999999999999999999999999999766543
No 19
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-62 Score=480.11 Aligned_cols=358 Identities=32% Similarity=0.490 Sum_probs=323.6
Q ss_pred cccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCc
Q 039378 178 ALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255 (600)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~ 255 (600)
.+..|.+++|+...+..++ +|..+|.+|+.+||..+.|+|+|.+|.||||||++|++|++.++....-. ...|.
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs----~~DGl 142 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWS----PTDGL 142 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCC----CCCCc
Confidence 3457999999999999998 99999999999999999999999999999999999999999999876532 33456
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc-CCCccceEEEEE
Q 039378 256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN-VCHLSEVSFVVL 334 (600)
Q Consensus 256 ~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~lVi 334 (600)
-||||+|||+||.|+++.+.+.+..+.+...+++||.........+. +.+|+|||||||+.++... .++.+++.+||+
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvL 221 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVL 221 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEe
Confidence 69999999999999999999999999999999999998665555544 4999999999999999765 567889999999
Q ss_pred cccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCc-ccccCCCeeEEEEEecCcch
Q 039378 335 DEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSE-DLAANHDVMQIVEVLDDRSR 413 (600)
Q Consensus 335 DEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~ 413 (600)
||||+|+++||...+..|+..+|..+|+++||||.+..+..+++..+ .+|.++.+... ....+..+.|++..+....+
T Consensus 222 DEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL-~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~K 300 (758)
T KOG0343|consen 222 DEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSL-KDPVYVSVHENAVAATPSNLQQSYVIVPLEDK 300 (758)
T ss_pred ccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhc-CCCcEEEEeccccccChhhhhheEEEEehhhH
Confidence 99999999999999999999999999999999999999999998888 78888877743 35667778899999999888
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecccccc
Q 039378 414 DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS--GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAAR 491 (600)
Q Consensus 414 ~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~ 491 (600)
...|..++..+. ..++|||+.|++.+..++..|..+ |+++..+||.|.|..|..++..|...+..||+|||+++|
T Consensus 301 i~~L~sFI~shl---k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aR 377 (758)
T KOG0343|consen 301 IDMLWSFIKSHL---KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAAR 377 (758)
T ss_pred HHHHHHHHHhcc---ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhc
Confidence 888888887654 568999999999999999999876 889999999999999999999999999999999999999
Q ss_pred CCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCc-HhHHHHH
Q 039378 492 GLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN-KALAGEL 544 (600)
Q Consensus 492 Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d-~~~~~~i 544 (600)
|||+|.|++||++|.|.++.+|+||+||++|.+..|.+++++++.+ ..++..|
T Consensus 378 GLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~L 431 (758)
T KOG0343|consen 378 GLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKL 431 (758)
T ss_pred cCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 4444444
No 20
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.3e-60 Score=506.32 Aligned_cols=356 Identities=36% Similarity=0.584 Sum_probs=318.6
Q ss_pred cccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceE
Q 039378 180 KSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257 (600)
Q Consensus 180 ~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~ 257 (600)
.+|.++++++.++..+. ||..|||+|.++||.+++|+|++++||||||||++|++|++.++.... ..+++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~--------~~~~~ 75 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR--------FRVQA 75 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc--------CCceE
Confidence 57999999999999987 899999999999999999999999999999999999999998875332 24578
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCC-CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcc
Q 039378 258 LVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDE 336 (600)
Q Consensus 258 liv~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDE 336 (600)
||++||++||.|+.+.++.++... ++++..++||.+...+...+..+++|+|+||++|.+++.+..+.+.++++|||||
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 999999999999999999987654 6888999999999888888889999999999999999998888899999999999
Q ss_pred cchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHH
Q 039378 337 ADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQR 416 (600)
Q Consensus 337 ah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (600)
||+|++++|...+..++..++..+|+++||||+|+.+..+...++ ..|..+.+.... ....+.+.+..+....+...
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~-~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~ 232 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQ-RDPVEVKVESTH--DLPAIEQRFYEVSPDERLPA 232 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhc-CCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHH
Confidence 999999999999999999999999999999999999999988888 677777665543 23345666666666666666
Q ss_pred HHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCC
Q 039378 417 LLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496 (600)
Q Consensus 417 l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~ 496 (600)
+..++... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|||+|
T Consensus 233 l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~ 309 (460)
T PRK11776 233 LQRLLLHH---QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIK 309 (460)
T ss_pred HHHHHHhc---CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchh
Confidence 66666543 356899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHH
Q 039378 497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLR 549 (600)
Q Consensus 497 ~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~ 549 (600)
++++||+||+|.++..|+||+|||||.|+.|.|++|+++.+...+..+...+.
T Consensus 310 ~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~ 362 (460)
T PRK11776 310 ALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLG 362 (460)
T ss_pred cCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999887777776654
No 21
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-61 Score=474.47 Aligned_cols=366 Identities=33% Similarity=0.533 Sum_probs=314.8
Q ss_pred cccccccCCCCHHHHHhhc---CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCC
Q 039378 178 ALKSFTESKLPDDVLGCCK---NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN 254 (600)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~---~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~ 254 (600)
.-..|..+||.+.+...+. ++..||.+|.++||.+++|+|++|.++||||||++|++|+++.+...... +.+..|
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~k--i~Rs~G 211 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPK--IQRSDG 211 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcc--ccccCC
Confidence 3467999999999988876 89999999999999999999999999999999999999999999887553 346779
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCC-ceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc-CCCccceEEE
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCG-VKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN-VCHLSEVSFV 332 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~l 332 (600)
+.+|||+||||||.|+++.+.++.+.+- |-...+.||..+......+++|++|+|+|||||++++.+. .+.+++++||
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 9999999999999999999999987654 4456789999999999999999999999999999999865 5678899999
Q ss_pred EEcccchhhcCCChHHHHHHHHhcC-------------cCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcc-----
Q 039378 333 VLDEADRMLDMGFEEPVRFILSKIS-------------LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSED----- 394 (600)
Q Consensus 333 ViDEah~l~~~~~~~~~~~il~~~~-------------~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~----- 394 (600)
|+||||++++.||...+..|++.+. ...|.+++||||+..+..+...-+ .+|+.|..+...
T Consensus 292 VlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sL-kDpv~I~ld~s~~~~~p 370 (708)
T KOG0348|consen 292 VLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSL-KDPVYISLDKSHSQLNP 370 (708)
T ss_pred EecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccc-cCceeeeccchhhhcCc
Confidence 9999999999999999999988762 235889999999999999988888 678777622111
Q ss_pred -------------------cccCCCeeEEEEEecCcchHHHHHHHHHHHhh-cCCCeEEEEEeehhcHHHHHHHHHhC--
Q 039378 395 -------------------LAANHDVMQIVEVLDDRSRDQRLLALLEKYHK-SQRNRVLVFALYQLEADRLENMLRRS-- 452 (600)
Q Consensus 395 -------------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~-- 452 (600)
...+..+.+.+.+++...+...|..+|....+ ....++|||+.+.+.++.-+..|...
T Consensus 371 ~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~ 450 (708)
T KOG0348|consen 371 KDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALL 450 (708)
T ss_pred chhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhh
Confidence 12223345666777777777777777766544 33458999999999999888777532
Q ss_pred --------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhh
Q 039378 453 --------------------GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTED 512 (600)
Q Consensus 453 --------------------~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~ 512 (600)
+..+..+||+|.|.+|..+++.|......||+|||+++||||+|+|++||.||+|.++++
T Consensus 451 ~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ad 530 (708)
T KOG0348|consen 451 SHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTAD 530 (708)
T ss_pred cccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHH
Confidence 245899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHH
Q 039378 513 YVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546 (600)
Q Consensus 513 y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~ 546 (600)
|+||+||++|+|.+|.++.|+.+.+.+++..+..
T Consensus 531 ylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 531 YLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred HHHHhhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 9999999999999999999999999887665543
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.1e-60 Score=502.32 Aligned_cols=363 Identities=40% Similarity=0.669 Sum_probs=316.8
Q ss_pred ccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEE
Q 039378 181 SFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCL 258 (600)
Q Consensus 181 ~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~l 258 (600)
+|.+++|++.++..+. ||..|||+|.++||.+++++|+|++||||||||++|++|++..+....... .....+++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~--~~~~~~~aL 79 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA--KGRRPVRAL 79 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhccccc--ccCCCceEE
Confidence 6889999999999987 999999999999999999999999999999999999999999887643211 012245799
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccc
Q 039378 259 VLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEAD 338 (600)
Q Consensus 259 iv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah 338 (600)
||+||++||.|+.+.+..+....++.+..++||.....+...+..+++|+|+||++|++++....+.++++++|||||||
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah 159 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD 159 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH
Confidence 99999999999999999999888899999999999888888888889999999999999988888889999999999999
Q ss_pred hhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHH
Q 039378 339 RMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLL 418 (600)
Q Consensus 339 ~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 418 (600)
+|++++|...+..++..++..+|+++||||++..+..+...++ .++..+.+..... ....+.+++..+....+...+.
T Consensus 160 ~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~-~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~k~~~l~ 237 (456)
T PRK10590 160 RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLL-HNPLEIEVARRNT-ASEQVTQHVHFVDKKRKRELLS 237 (456)
T ss_pred HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHc-CCCeEEEEecccc-cccceeEEEEEcCHHHHHHHHH
Confidence 9999999999999999999999999999999999988888887 5676665544332 2234455555555444433333
Q ss_pred HHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCc
Q 039378 419 ALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDV 498 (600)
Q Consensus 419 ~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v 498 (600)
.++. .....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++
T Consensus 238 ~l~~---~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v 314 (456)
T PRK10590 238 QMIG---KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314 (456)
T ss_pred HHHH---cCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccC
Confidence 3332 2335689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHH
Q 039378 499 EVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLRE 550 (600)
Q Consensus 499 ~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~ 550 (600)
++||||++|.++.+|+||+||+||.|..|.+++|++..|...+..|...+..
T Consensus 315 ~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~ 366 (456)
T PRK10590 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366 (456)
T ss_pred CEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999988888777653
No 23
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=5.4e-60 Score=509.86 Aligned_cols=357 Identities=38% Similarity=0.625 Sum_probs=315.8
Q ss_pred ccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCce
Q 039378 179 LKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPL 256 (600)
Q Consensus 179 ~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~ 256 (600)
..+|.+++|++.++.++. ||.+|+|+|.++||.++.++|+|++||||+|||++|++|++..+.... ..++
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~--------~~~~ 76 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL--------KAPQ 76 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc--------CCCe
Confidence 346899999999999987 999999999999999999999999999999999999999998875432 2567
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEc
Q 039378 257 CLVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLD 335 (600)
Q Consensus 257 ~liv~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViD 335 (600)
+|||+||++||.|+++.+..+.... ++.++.++||.....+...+..+++|||+||++|.+++.+..+.++++++||||
T Consensus 77 ~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 77 ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 9999999999999999999887654 688999999999888888888899999999999999999888889999999999
Q ss_pred ccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHH
Q 039378 336 EADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ 415 (600)
Q Consensus 336 Eah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (600)
|||.|++++|...+..++..++..+|+++||||+|..+..+...++ .++..+.+..... ....+.+.+..+....+..
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l-~~~~~i~i~~~~~-~~~~i~q~~~~v~~~~k~~ 234 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFM-KEPQEVRIQSSVT-TRPDISQSYWTVWGMRKNE 234 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHc-CCCeEEEccCccc-cCCceEEEEEEechhhHHH
Confidence 9999999999999999999999999999999999999999998888 5676666554332 2334555555555555666
Q ss_pred HHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCC
Q 039378 416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495 (600)
Q Consensus 416 ~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi 495 (600)
.+..++.. ....++||||+++..+..|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 235 ~L~~~L~~---~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDi 311 (629)
T PRK11634 235 ALVRFLEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 311 (629)
T ss_pred HHHHHHHh---cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCc
Confidence 66666543 235689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHH
Q 039378 496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVL 548 (600)
Q Consensus 496 ~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l 548 (600)
|+|++|||||+|.++..|+||+|||||+|+.|.+++|+++.+...++.|...+
T Consensus 312 p~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~ 364 (629)
T PRK11634 312 ERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 (629)
T ss_pred ccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998877777665543
No 24
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6e-60 Score=507.14 Aligned_cols=365 Identities=38% Similarity=0.576 Sum_probs=315.5
Q ss_pred cccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceE
Q 039378 180 KSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257 (600)
Q Consensus 180 ~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~ 257 (600)
.+|.+++|++.++.++. ||..|||+|.++||.+++|+|++++||||||||++|++|++.+++...... ......+++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~-~~~~~~~ra 87 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA-DRKPEDPRA 87 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc-ccccCCceE
Confidence 46999999999999987 999999999999999999999999999999999999999999987643211 112235789
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc-CCCccceEEEEEcc
Q 039378 258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN-VCHLSEVSFVVLDE 336 (600)
Q Consensus 258 liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~lViDE 336 (600)
|||+||++||.|+++.+..++...++++..++||.....+...+..+++|||+||++|++++... .+.+..+++|||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999999998999999999999988888888888999999999999988764 46788999999999
Q ss_pred cchhhcCCChHHHHHHHHhcCc--CCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchH
Q 039378 337 ADRMLDMGFEEPVRFILSKISL--ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414 (600)
Q Consensus 337 ah~l~~~~~~~~~~~il~~~~~--~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (600)
||+|++++|...+..++..++. .+|+++||||++..+..+...++ ..+..+.+..... ....+.+.+.......+.
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l-~~p~~i~v~~~~~-~~~~i~q~~~~~~~~~k~ 245 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHM-NEPEKLVVETETI-TAARVRQRIYFPADEEKQ 245 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHh-cCCcEEEeccccc-cccceeEEEEecCHHHHH
Confidence 9999999999999999998876 67999999999999998888888 5565555544332 223345555555444444
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCC
Q 039378 415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494 (600)
Q Consensus 415 ~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gld 494 (600)
..+..++. .....++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||
T Consensus 246 ~~L~~ll~---~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGID 322 (572)
T PRK04537 246 TLLLGLLS---RSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLH 322 (572)
T ss_pred HHHHHHHh---cccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCC
Confidence 44444443 334678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHH
Q 039378 495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLRE 550 (600)
Q Consensus 495 i~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~ 550 (600)
+|++++|||||+|.++..|+||+||+||.|..|.|++|+++.+...+..|...+..
T Consensus 323 ip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 323 IDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred ccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999888888888776654
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-60 Score=456.31 Aligned_cols=366 Identities=30% Similarity=0.485 Sum_probs=328.8
Q ss_pred cccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceE
Q 039378 180 KSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257 (600)
Q Consensus 180 ~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~ 257 (600)
..|++++|.++++.++. ||.+||-+|..+||.++.|+|+++.|.||||||.+|+||+++.++...... ....+|.+
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa 96 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSA 96 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc--ccccccee
Confidence 68999999999999987 999999999999999999999999999999999999999999999875432 34568999
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCC--ceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccC-CCccceEEEEE
Q 039378 258 LVLSPTRELADQIYDVLNDAGKPCG--VKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNV-CHLSEVSFVVL 334 (600)
Q Consensus 258 liv~Ptr~La~q~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~-~~l~~~~~lVi 334 (600)
+|++||||||+|++..+.++...++ ++++-+....+.......+...++|||+||++|+.++..+. ..+..++++|+
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVv 176 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVV 176 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEe
Confidence 9999999999999999999877664 66666666666665557777789999999999999998776 66889999999
Q ss_pred cccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchH
Q 039378 335 DEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414 (600)
Q Consensus 335 DEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (600)
||||.++..||...+..+...+|+..|.++||||++.++..+-+.++ .+|+.+.+...+......+.|+...|...++.
T Consensus 177 DEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l-~nPviLkl~e~el~~~dqL~Qy~v~cse~DKf 255 (569)
T KOG0346|consen 177 DEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFL-HNPVILKLTEGELPNPDQLTQYQVKCSEEDKF 255 (569)
T ss_pred chhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhc-cCCeEEEeccccCCCcccceEEEEEeccchhH
Confidence 99999999999999999999999999999999999999999988888 88999998888888778888999999887777
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccc------
Q 039378 415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDV------ 488 (600)
Q Consensus 415 ~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~------ 488 (600)
..++.++..-. -.+++|||+|+++.+.+|.-.|...|++.+++.|.||...|.-++++|+.|-+.+|||||.
T Consensus 256 lllyallKL~L--I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~ 333 (569)
T KOG0346|consen 256 LLLYALLKLRL--IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDK 333 (569)
T ss_pred HHHHHHHHHHH--hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhh
Confidence 77766665432 3689999999999999999999999999999999999999999999999999999999991
Q ss_pred -----------------------------cccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHh
Q 039378 489 -----------------------------AARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539 (600)
Q Consensus 489 -----------------------------~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~ 539 (600)
++||||+.+|.+|||||+|.++..|+||+|||+|+|++|.+++|+.+.+..
T Consensus 334 ~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 334 LEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred hhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 579999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHH
Q 039378 540 LAGELVNVLRE 550 (600)
Q Consensus 540 ~~~~i~~~l~~ 550 (600)
....|..++..
T Consensus 414 g~~~le~~~~d 424 (569)
T KOG0346|consen 414 GKESLESILKD 424 (569)
T ss_pred hhhHHHHHHhh
Confidence 66666666654
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.3e-59 Score=490.65 Aligned_cols=361 Identities=35% Similarity=0.568 Sum_probs=313.7
Q ss_pred ccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEE
Q 039378 181 SFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCL 258 (600)
Q Consensus 181 ~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~l 258 (600)
+|+++++++.++..+. ||..|+++|.++|+.+++|+|++++||||+|||++|++|++.++...+.. ....+++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~----~~~~~~~l 77 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR----KSGPPRIL 77 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc----CCCCceEE
Confidence 5899999999999986 99999999999999999999999999999999999999999998764321 12356899
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccc
Q 039378 259 VLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEAD 338 (600)
Q Consensus 259 iv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah 338 (600)
|++||++||.|+++.+..+....++.+..++||.....+...+..+++|+|+||++|.+++....+.+.++++|||||||
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah 157 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD 157 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH
Confidence 99999999999999999999988999999999999888887788889999999999999998888889999999999999
Q ss_pred hhhcCCChHHHHHHHHhcCcCCcEEEEeccCCh-hHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecC-cchHHH
Q 039378 339 RMLDMGFEEPVRFILSKISLARQMVMFSATWPI-EVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDD-RSRDQR 416 (600)
Q Consensus 339 ~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 416 (600)
+|++++|...+..+...++...|+++||||++. .+..+...++ ..+..+....... ....+.+++..... ..+...
T Consensus 158 ~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~~k~~~ 235 (434)
T PRK11192 158 RMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLL-NDPVEVEAEPSRR-ERKKIHQWYYRADDLEHKTAL 235 (434)
T ss_pred HHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHc-cCCEEEEecCCcc-cccCceEEEEEeCCHHHHHHH
Confidence 999999999999999999888999999999985 4666666666 6777766554332 23334455544433 223333
Q ss_pred HHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCC
Q 039378 417 LLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496 (600)
Q Consensus 417 l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~ 496 (600)
+..++. .....++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|
T Consensus 236 l~~l~~---~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip 312 (434)
T PRK11192 236 LCHLLK---QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDID 312 (434)
T ss_pred HHHHHh---cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCC
Confidence 333332 22467999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHH
Q 039378 497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLRE 550 (600)
Q Consensus 497 ~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~ 550 (600)
++++|||||+|.++..|+||+||+||.|..|.+++|++..|...+..+..++..
T Consensus 313 ~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 313 DVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred CCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999888888877653
No 27
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-60 Score=500.88 Aligned_cols=385 Identities=41% Similarity=0.685 Sum_probs=356.5
Q ss_pred hhccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCC
Q 039378 175 KYKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKR 252 (600)
Q Consensus 175 ~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~ 252 (600)
.+.++.+|...++...++..++ ||..|+|||.+|||.|+.|+|||..|.||||||++|++|++.|+...+.. ...
T Consensus 360 ~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~---~~g 436 (997)
T KOG0334|consen 360 CPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL---EEG 436 (997)
T ss_pred CCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCCh---hhC
Confidence 4678999999999999999987 99999999999999999999999999999999999999999888776553 345
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccC---CCccce
Q 039378 253 VNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNV---CHLSEV 329 (600)
Q Consensus 253 ~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~---~~l~~~ 329 (600)
.||.+||++|||+|+.|+++++..|...++++++++|||.....++..++.++.|+|||||+.++++-.+. .++.++
T Consensus 437 dGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~ 516 (997)
T KOG0334|consen 437 DGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRV 516 (997)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccccccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999886543 456666
Q ss_pred EEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEec
Q 039378 330 SFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD 409 (600)
Q Consensus 330 ~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 409 (600)
.+||+||||+|++++|.+++..|+..+++.+|+++||||+|..+..++...+. .|+.+.++... .++..+.+.+..+.
T Consensus 517 t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~-~Pveiiv~~~s-vV~k~V~q~v~V~~ 594 (997)
T KOG0334|consen 517 TYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLK-KPVEIIVGGRS-VVCKEVTQVVRVCA 594 (997)
T ss_pred ceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhc-CCeeEEEccce-eEeccceEEEEEec
Confidence 79999999999999999999999999999999999999999999999999995 88888887544 56777888888887
Q ss_pred -CcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccc
Q 039378 410 -DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDV 488 (600)
Q Consensus 410 -~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~ 488 (600)
...+...|+.+|..+.. .+++||||.++..|+.|.+.|...|+++..+||+.++.+|..+++.|++|.+.+||||++
T Consensus 595 ~e~eKf~kL~eLl~e~~e--~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsv 672 (997)
T KOG0334|consen 595 IENEKFLKLLELLGERYE--DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSV 672 (997)
T ss_pred CchHHHHHHHHHHHHHhh--cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhh
Confidence 78889999999988765 689999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcHHHHhhhhhh
Q 039378 489 AARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHV 566 (600)
Q Consensus 489 ~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l~~~~~~~ 566 (600)
++||||++.+..|||||+|.....|+||+|||||+|+.|.|++|+++.+..+...|+..+....+.+|..|..+....
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f 750 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSERF 750 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888876543
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-57 Score=483.08 Aligned_cols=377 Identities=36% Similarity=0.546 Sum_probs=320.2
Q ss_pred ccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCce
Q 039378 179 LKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPL 256 (600)
Q Consensus 179 ~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~ 256 (600)
...|.++++++.++.++. ||..|+++|.++|+.+++|+|+|+++|||||||++|++|++..++..+.... .....++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~-~~~~~~~ 164 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKE-RYMGEPR 164 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccc-cccCCce
Confidence 456888999999999987 9999999999999999999999999999999999999999999887643211 1122578
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHh-cCCcEEEEchHHHHHHHHccCCCccceEEEEEc
Q 039378 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALR-SGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLD 335 (600)
Q Consensus 257 ~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViD 335 (600)
+|||+||++||.|+++.+..+....++.+..++||.....+...+. ..++|+|+||++|..++......++++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 9999999999999999999999888999999999988777766664 458999999999999988888889999999999
Q ss_pred ccchhhcCCChHHHHHHHHhcCc--CCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcch
Q 039378 336 EADRMLDMGFEEPVRFILSKISL--ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSR 413 (600)
Q Consensus 336 Eah~l~~~~~~~~~~~il~~~~~--~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (600)
|||++++++|...+..++..++. .+|++++|||++..+..+...++ .++..+.+...... ...+.+.+..+....+
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~k 322 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWT-TDPAIVEIEPENVA-SDTVEQHVYAVAGSDK 322 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhc-cCCEEEEeccCcCC-CCcccEEEEEecchhH
Confidence 99999999999999999988864 57999999999999998888887 56766665544322 2334455555555555
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCC
Q 039378 414 DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGL 493 (600)
Q Consensus 414 ~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gl 493 (600)
...+..++.. ....++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++||
T Consensus 323 ~~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GI 399 (475)
T PRK01297 323 YKLLYNLVTQ---NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGI 399 (475)
T ss_pred HHHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCC
Confidence 5445444433 3356999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhc--CCCcHHHHh
Q 039378 494 DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREAR--QVVPDALLK 561 (600)
Q Consensus 494 di~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~--~~ip~~l~~ 561 (600)
|||++++||+||+|.++..|+||+||+||.|+.|.+++|++.+|...+..+..++.... ...|..++.
T Consensus 400 Di~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 400 HIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred cccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 99999999999999999999999999999999999999999998888888888776553 224444443
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.6e-56 Score=465.74 Aligned_cols=366 Identities=31% Similarity=0.541 Sum_probs=311.3
Q ss_pred cccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCc
Q 039378 178 ALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255 (600)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~ 255 (600)
...+|.++++++.+...+. ||..|+|+|.++|+.+++++|++++||||||||++|++|++..+.... .++
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~--------~~~ 97 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDL--------NAC 97 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCC--------CCc
Confidence 3578999999999999886 899999999999999999999999999999999999999988764321 255
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEc
Q 039378 256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLD 335 (600)
Q Consensus 256 ~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViD 335 (600)
++|||+||++|+.|+.+.+..++...++.+...+|+.........+..+++|+|+||++|.+.+.+....+.++++||||
T Consensus 98 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViD 177 (401)
T PTZ00424 98 QALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILD 177 (401)
T ss_pred eEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEe
Confidence 68999999999999999999998887888888899988888888888889999999999999988877889999999999
Q ss_pred ccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecC-cchH
Q 039378 336 EADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDD-RSRD 414 (600)
Q Consensus 336 Eah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~ 414 (600)
|||++++.++...+..++..++...|++++|||+|..+..+...++ ..+..+.+...... ...+.+++..... ..+.
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 255 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFM-RDPKRILVKKDELT-LEGIRQFYVAVEKEEWKF 255 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHc-CCCEEEEeCCCCcc-cCCceEEEEecChHHHHH
Confidence 9999999999888899999999999999999999999888888877 55665554443322 2233444433332 1222
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCC
Q 039378 415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494 (600)
Q Consensus 415 ~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gld 494 (600)
..+..++. .....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||
T Consensus 256 ~~l~~~~~---~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiD 332 (401)
T PTZ00424 256 DTLCDLYE---TLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGID 332 (401)
T ss_pred HHHHHHHH---hcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcC
Confidence 33333332 234568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCc
Q 039378 495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVP 556 (600)
Q Consensus 495 i~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip 556 (600)
+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++.+...+..+.+.+.......|
T Consensus 333 ip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 333 VQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred cccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 99999999999999999999999999999999999999999998888777666654434333
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-56 Score=420.50 Aligned_cols=372 Identities=31% Similarity=0.530 Sum_probs=312.4
Q ss_pred hhccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcC--CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCC
Q 039378 175 KYKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVG 250 (600)
Q Consensus 175 ~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~--~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~ 250 (600)
++-...+|++++|.|+++..++ +|.+|+.+|..++|.++.. +++|.++..|+|||.||.+.++.++--.
T Consensus 85 PlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~------- 157 (477)
T KOG0332|consen 85 PLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD------- 157 (477)
T ss_pred CccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-------
Confidence 3456789999999999999987 9999999999999999976 6899999999999999999988775432
Q ss_pred CCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHc-cCCCccce
Q 039378 251 KRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEM-NVCHLSEV 329 (600)
Q Consensus 251 ~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~~ 329 (600)
...|+++.|+|||+||.|+.+.+.+.++++++...+...+.....- ..+ ..+|+|+||+.+.+++.+ ..+.+..+
T Consensus 158 -~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~id~~ki 233 (477)
T KOG0332|consen 158 -VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKCIDLEKI 233 (477)
T ss_pred -ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHhhChhhc
Confidence 3478899999999999999999999999998888777766521110 001 158999999999999877 66778999
Q ss_pred EEEEEcccchhhc-CCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEe
Q 039378 330 SFVVLDEADRMLD-MGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVL 408 (600)
Q Consensus 330 ~~lViDEah~l~~-~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 408 (600)
+++|+||||.|++ +||.++-..|...++...|+++||||+...+..++.... +++..+.+..+..... .+.+++..|
T Consensus 234 kvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kiv-pn~n~i~Lk~eel~L~-~IkQlyv~C 311 (477)
T KOG0332|consen 234 KVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIV-PNANVIILKREELALD-NIKQLYVLC 311 (477)
T ss_pred eEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhc-CCCceeeeehhhcccc-chhhheeec
Confidence 9999999999987 578999999999999999999999999999999999988 7888888877776554 455555555
Q ss_pred c-CcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc
Q 039378 409 D-DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD 487 (600)
Q Consensus 409 ~-~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~ 487 (600)
. ...+...+..++..+ .-+..||||.++..+..|+..|...|+.|..+||.|...+|..+++.|+.|..+|||+|+
T Consensus 312 ~~~~~K~~~l~~lyg~~---tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTn 388 (477)
T KOG0332|consen 312 ACRDDKYQALVNLYGLL---TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTN 388 (477)
T ss_pred cchhhHHHHHHHHHhhh---hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEec
Confidence 4 445555565544433 367899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcCEEEEcCCCC------ChhhHHHHhhhccCCCCccEEEEEEcCCc-HhHHHHHHHHHHH-hcCCCcHHH
Q 039378 488 VAARGLDIPDVEVVINYSFPL------TTEDYVHRIGRTGRAGKKGVSHTFFTNHN-KALAGELVNVLRE-ARQVVPDAL 559 (600)
Q Consensus 488 ~~~~Gldi~~v~~VI~~d~p~------s~~~y~qr~GR~gR~g~~g~~~~~~~~~d-~~~~~~i~~~l~~-~~~~ip~~l 559 (600)
+++||||++.|+.|||||+|. ++++|+||+||+||.|+.|.++.|+...+ ..++..|.+.... .....|+.+
T Consensus 389 V~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~ 468 (477)
T KOG0332|consen 389 VCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDL 468 (477)
T ss_pred hhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccH
Confidence 999999999999999999994 68999999999999999999999997654 4556666666533 234455554
Q ss_pred Hhh
Q 039378 560 LKF 562 (600)
Q Consensus 560 ~~~ 562 (600)
.++
T Consensus 469 ~E~ 471 (477)
T KOG0332|consen 469 DEL 471 (477)
T ss_pred HHH
Confidence 443
No 31
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-56 Score=433.96 Aligned_cols=344 Identities=31% Similarity=0.459 Sum_probs=284.2
Q ss_pred CCCCCcHHHHHHhhhhhc---------CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLN---------GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELA 267 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~---------~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La 267 (600)
+++..+|+|..++|+++. .+|+++.||||||||++|.||+++.+..++.. ..+|+||+||++|+
T Consensus 156 ~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~-------~LRavVivPtr~L~ 228 (620)
T KOG0350|consen 156 AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVK-------RLRAVVIVPTRELA 228 (620)
T ss_pred hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCcc-------ceEEEEEeeHHHHH
Confidence 788999999999999862 47999999999999999999999988776442 46799999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcC-----CcEEEEchHHHHHHHHc-cCCCccceEEEEEcccchhh
Q 039378 268 DQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSG-----VDIVIGTPGRLIDLIEM-NVCHLSEVSFVVLDEADRML 341 (600)
Q Consensus 268 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~-----~~Iiv~Tp~~l~~~l~~-~~~~l~~~~~lViDEah~l~ 341 (600)
.|+++.|.++....|+.+..+.|..+.......+... .||+|+|||||++++.. ..+.|++++|+||||||+|+
T Consensus 229 ~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll 308 (620)
T KOG0350|consen 229 LQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLL 308 (620)
T ss_pred HHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHH
Confidence 9999999999999999988888888877777766543 48999999999999984 57889999999999999999
Q ss_pred cCCChHHHHHHHHhcCcC----------------------------------CcEEEEeccCChhHHHHHHHhcCCCCeE
Q 039378 342 DMGFEEPVRFILSKISLA----------------------------------RQMVMFSATWPIEVHKLAEEYMDPNPVK 387 (600)
Q Consensus 342 ~~~~~~~~~~il~~~~~~----------------------------------~q~i~~SATl~~~~~~~~~~~~~~~~~~ 387 (600)
+..|..|+..++..+... .+.+++|||++.....+...-+..+...
T Consensus 309 ~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~ 388 (620)
T KOG0350|consen 309 DQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLF 388 (620)
T ss_pred HHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceE
Confidence 988888777776555322 1468899999888887777666333344
Q ss_pred EEECC--cccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHH----hCCCeEEEEcC
Q 039378 388 VVVGS--EDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLR----RSGWKVVAIHG 461 (600)
Q Consensus 388 i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~----~~~~~~~~l~~ 461 (600)
..... ..+..+..+.+....+...-+...+..++... ...++|||+++...+.+|+..|. ..++++..+.|
T Consensus 389 ~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~---k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~ 465 (620)
T KOG0350|consen 389 HVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN---KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTG 465 (620)
T ss_pred EeecccceeeecChhhhhceeecccccchHhHHHHHHHh---hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhh
Confidence 33321 22233444455555555545555555555443 46799999999999999999887 34677888999
Q ss_pred CCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHH
Q 039378 462 KKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALA 541 (600)
Q Consensus 462 ~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~ 541 (600)
.++.+.|.+.++.|+.|.+.||||+|+++||+|+.+++.|||||+|.+..+|+||+||+||+|+.|.|++++..++...+
T Consensus 466 ~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F 545 (620)
T KOG0350|consen 466 QLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLF 545 (620)
T ss_pred hhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHH
Q 039378 542 GELVNVLRE 550 (600)
Q Consensus 542 ~~i~~~l~~ 550 (600)
..+.+....
T Consensus 546 ~klL~~~~~ 554 (620)
T KOG0350|consen 546 SKLLKKTNL 554 (620)
T ss_pred HHHHHHhcc
Confidence 777665543
No 32
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-55 Score=436.87 Aligned_cols=382 Identities=30% Similarity=0.469 Sum_probs=319.3
Q ss_pred hcccccccc----CCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccC
Q 039378 176 YKALKSFTE----SKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV 249 (600)
Q Consensus 176 ~~~~~~~~~----~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~ 249 (600)
+.++.+|.+ +...+.+++.+. +|..|+|+|.+++|.++.+++++.|||||||||++|.+|++.++......
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~--- 204 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQE--- 204 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcc---
Confidence 456777765 567888888776 99999999999999999999999999999999999999999998765421
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHHhc--CCCCceEEEEeCCCChH-HHHHHHhcCCcEEEEchHHHHHHHHccC--C
Q 039378 250 GKRVNPLCLVLSPTRELADQIYDVLNDAG--KPCGVKSVCVYGGTSKQ-PQITALRSGVDIVIGTPGRLIDLIEMNV--C 324 (600)
Q Consensus 250 ~~~~~~~~liv~Ptr~La~q~~~~~~~~~--~~~~~~~~~~~~g~~~~-~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~--~ 324 (600)
....+.+++|+.|||+||.|++.++.++. ...+++...+....... .........++|+|+||-++..++.... +
T Consensus 205 ~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~i 284 (593)
T KOG0344|consen 205 KHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNI 284 (593)
T ss_pred cCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccc
Confidence 12347789999999999999999999998 55555544443332211 1111222347999999999999987764 6
Q ss_pred CccceEEEEEcccchhhcC-CChHHHHHHHHhcCc-CCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCee
Q 039378 325 HLSEVSFVVLDEADRMLDM-GFEEPVRFILSKISL-ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVM 402 (600)
Q Consensus 325 ~l~~~~~lViDEah~l~~~-~~~~~~~~il~~~~~-~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 402 (600)
.++.+.++|+||||++.+. +|..++..|+..+.. ...+-+||||++..+++++...+ ..+..+.++..+......-+
T Consensus 285 dl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~-~~~~~vivg~~~sa~~~V~Q 363 (593)
T KOG0344|consen 285 DLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIK-SDLKRVIVGLRNSANETVDQ 363 (593)
T ss_pred hhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhh-ccceeEEEecchhHhhhhhh
Confidence 7899999999999999998 888899998887754 34677899999999999998887 67888888876654333333
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHH-HhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCC
Q 039378 403 QIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENML-RRSGWKVVAIHGKKAQHERTKSLSLFKEGTCP 481 (600)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L-~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~ 481 (600)
....+.....+...+..++.. .-..++|||+++.+.+..|...| .-.++++..+||..++.+|..++++|+.|.++
T Consensus 364 elvF~gse~~K~lA~rq~v~~---g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw 440 (593)
T KOG0344|consen 364 ELVFCGSEKGKLLALRQLVAS---GFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIW 440 (593)
T ss_pred hheeeecchhHHHHHHHHHhc---cCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCee
Confidence 344444454555555555544 34679999999999999999999 67789999999999999999999999999999
Q ss_pred EEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcHHHHh
Q 039378 482 LMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLK 561 (600)
Q Consensus 482 vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l~~ 561 (600)
|||||++++||+|+.+++.|||||+|.+...|+||+||+||+|+.|.+++||+..|...++.|.+.+.+.+.++|+|+..
T Consensus 441 vLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~m~ 520 (593)
T KOG0344|consen 441 VLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKIMG 520 (593)
T ss_pred EEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 039378 562 FGT 564 (600)
Q Consensus 562 ~~~ 564 (600)
+..
T Consensus 521 ~~k 523 (593)
T KOG0344|consen 521 IKK 523 (593)
T ss_pred hhh
Confidence 775
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-55 Score=418.43 Aligned_cols=360 Identities=34% Similarity=0.519 Sum_probs=326.5
Q ss_pred ccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCce
Q 039378 179 LKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPL 256 (600)
Q Consensus 179 ~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~ 256 (600)
...|..++|...+++++. ||+.|||+|+..||.++.++|++..+-||||||.||+||+++++.... ..+.+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-------~~g~R 92 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLR 92 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-------ccccc
Confidence 457999999999999986 999999999999999999999999999999999999999999987653 23667
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcc
Q 039378 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDE 336 (600)
Q Consensus 257 ~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDE 336 (600)
++|+.|||+|+.|..+.+..++..++++.++++||....+++..+..++|||++||+++.++.-.-.+.|+.+.|||+||
T Consensus 93 alilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdE 172 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDE 172 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999887655557899999999999
Q ss_pred cchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHH
Q 039378 337 ADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQR 416 (600)
Q Consensus 337 ah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (600)
||++..+||..++..++..++..+|+++||||+|..+..+++..+ .+|..+.++.+. .........+..+....+..+
T Consensus 173 adrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl-~~p~lVRldvet-kise~lk~~f~~~~~a~K~aa 250 (529)
T KOG0337|consen 173 ADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGL-VPPVLVRLDVET-KISELLKVRFFRVRKAEKEAA 250 (529)
T ss_pred hhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccC-CCCceEEeehhh-hcchhhhhheeeeccHHHHHH
Confidence 999999999999999999999999999999999999999998888 677777655433 344555666677777778888
Q ss_pred HHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCC
Q 039378 417 LLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496 (600)
Q Consensus 417 l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~ 496 (600)
|+.++..... ..+++|||.+..+++.+...|...|+.+..++|.|++..|...+..|+.++..+||.||+++||+|||
T Consensus 251 Ll~il~~~~~--~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~dip 328 (529)
T KOG0337|consen 251 LLSILGGRIK--DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIP 328 (529)
T ss_pred HHHHHhcccc--ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCc
Confidence 8888776543 45899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHH
Q 039378 497 DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLR 549 (600)
Q Consensus 497 ~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~ 549 (600)
..+.|||||+|.+...|+||+||++|+|+.|.+|.++.+.+..++-+|-.++.
T Consensus 329 lldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflg 381 (529)
T KOG0337|consen 329 LLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLG 381 (529)
T ss_pred cccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcC
Confidence 99999999999999999999999999999999999999999887766655443
No 34
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.5e-54 Score=407.33 Aligned_cols=369 Identities=31% Similarity=0.538 Sum_probs=330.6
Q ss_pred ccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCC
Q 039378 177 KALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN 254 (600)
Q Consensus 177 ~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~ 254 (600)
+-+.+|++++|++.|+..++ ||.+|+.+|+.||+.+..|.|+++.+.+|+|||.+|.+++++.+.-. ...
T Consensus 23 evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~--------~ke 94 (397)
T KOG0327|consen 23 EVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS--------VKE 94 (397)
T ss_pred HHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc--------hHH
Confidence 34579999999999999987 99999999999999999999999999999999999999998876222 224
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHh-cCCcEEEEchHHHHHHHHccCCCccceEEEE
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALR-SGVDIVIGTPGRLIDLIEMNVCHLSEVSFVV 333 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 333 (600)
.++|+++|||+||.|+......++...+.++....||.....+...+. .++.|+++||+++.+.+....+....++++|
T Consensus 95 ~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfv 174 (397)
T KOG0327|consen 95 TQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFV 174 (397)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEe
Confidence 558999999999999999999999999999999999988875554444 4689999999999999988888888899999
Q ss_pred EcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcch
Q 039378 334 LDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSR 413 (600)
Q Consensus 334 iDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (600)
+||||.|+..||.+++..+++.++...|++++|||+|.++..+.+.++ .+|..+.+....+. ...+.+++.......+
T Consensus 175 lDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~-~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k 252 (397)
T KOG0327|consen 175 LDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFM-REPVRILVKKDELT-LEGIKQFYINVEKEEK 252 (397)
T ss_pred ecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhc-cCceEEEecchhhh-hhheeeeeeecccccc
Confidence 999999999999999999999999999999999999999999999999 89999988887754 4456677766666666
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCC
Q 039378 414 DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGL 493 (600)
Q Consensus 414 ~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gl 493 (600)
...+..++. .....+||||+.+.+..+...|...++.+..+||.|.+.+|..++..|+.|..+|||+|+.++||+
T Consensus 253 ~~~l~dl~~-----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argi 327 (397)
T KOG0327|consen 253 LDTLCDLYR-----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGI 327 (397)
T ss_pred ccHHHHHHH-----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecccccccc
Confidence 666666665 256889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcHHHH
Q 039378 494 DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALL 560 (600)
Q Consensus 494 di~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l~ 560 (600)
|+..+..||||++|.+.+.|+||+||+||.|++|.++.+++.++...++.+.++..-...+.|....
T Consensus 328 dv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~ 394 (397)
T KOG0327|consen 328 DVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFA 394 (397)
T ss_pred chhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchh
Confidence 9999999999999999999999999999999999999999999999999998777666666665443
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.6e-50 Score=444.77 Aligned_cols=346 Identities=21% Similarity=0.264 Sum_probs=265.7
Q ss_pred CCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEccc
Q 039378 186 KLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPT 263 (600)
Q Consensus 186 ~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Pt 263 (600)
.+++.+..++. ||..||++|.++|+.+++|+|+++++|||||||++|++|++..+...+ ++++|||+||
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~---------~~~aL~l~Pt 90 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP---------RATALYLAPT 90 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC---------CcEEEEEcCh
Confidence 47788888887 899999999999999999999999999999999999999999887642 4579999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc----CCCccceEEEEEcccch
Q 039378 264 RELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN----VCHLSEVSFVVLDEADR 339 (600)
Q Consensus 264 r~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~----~~~l~~~~~lViDEah~ 339 (600)
|+|+.|+.+.+..++ ..++++..+.|+.. ..+...+..+++|||+||++|...+... ...++++++|||||||.
T Consensus 91 raLa~q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 91 KALAADQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred HHHHHHHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 999999999999987 44677766655554 4555667777999999999997533211 12378999999999999
Q ss_pred hhcCCChHHHHHHHHhc-------CcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecC--
Q 039378 340 MLDMGFEEPVRFILSKI-------SLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDD-- 410 (600)
Q Consensus 340 l~~~~~~~~~~~il~~~-------~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-- 410 (600)
|.+. |+..+..++..+ +..+|++++|||++.... +...++ ..+..+. ...... ... ..+......
T Consensus 169 ~~g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~-g~~~~~i-~~~~~~-~~~-~~~~~~~p~~~ 242 (742)
T TIGR03817 169 YRGV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLI-GAPVVAV-TEDGSP-RGA-RTVALWEPPLT 242 (742)
T ss_pred ccCc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHc-CCCeEEE-CCCCCC-cCc-eEEEEecCCcc
Confidence 9764 776666555443 456899999999998754 555666 4454433 222111 111 111111111
Q ss_pred -----------cchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC--------CCeEEEEcCCCCHHHHHHH
Q 039378 411 -----------RSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS--------GWKVVAIHGKKAQHERTKS 471 (600)
Q Consensus 411 -----------~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--------~~~~~~l~~~~~~~~r~~~ 471 (600)
.........++..+.. .+.++||||+|+..++.++..|... +..+..+||++++.+|..+
T Consensus 243 ~~~~~~~~~~r~~~~~~~~~~l~~l~~-~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~i 321 (742)
T TIGR03817 243 ELTGENGAPVRRSASAEAADLLADLVA-EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRREL 321 (742)
T ss_pred ccccccccccccchHHHHHHHHHHHHH-CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHH
Confidence 0111222333333333 2579999999999999999988753 5678999999999999999
Q ss_pred HHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcC--CcHhHHHHHHHHHH
Q 039378 472 LSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTN--HNKALAGELVNVLR 549 (600)
Q Consensus 472 ~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~--~d~~~~~~i~~~l~ 549 (600)
+++|++|++++||||+++++||||+++++||+||+|.+...|+||+|||||.|+.|.++++... .|...+..+..++.
T Consensus 322 e~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~ 401 (742)
T TIGR03817 322 ERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFD 401 (742)
T ss_pred HHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999998863 34444444444443
No 36
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.4e-51 Score=412.13 Aligned_cols=347 Identities=31% Similarity=0.504 Sum_probs=305.6
Q ss_pred cccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCc
Q 039378 178 ALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255 (600)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~ 255 (600)
....|+.+.|...++..++ +|..||++|..|||.++.+-|+||+|..|+|||++|.+.++..+..+. ..+
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~--------~~~ 94 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS--------SHI 94 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc--------Ccc
Confidence 3467888999999999998 999999999999999999999999999999999999988887764432 367
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCC-CCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEE
Q 039378 256 LCLVLSPTRELADQIYDVLNDAGKP-CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVL 334 (600)
Q Consensus 256 ~~liv~Ptr~La~q~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVi 334 (600)
+++||+|||++|.|+.+.+..++.. .|+++.+++||.........++. +.|+|+||||+..+++.+.++.++++++|+
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlfVL 173 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLFVL 173 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEEEe
Confidence 7899999999999999999999874 57999999999998888777776 889999999999999999999999999999
Q ss_pred cccchhhc-CCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcc-
Q 039378 335 DEADRMLD-MGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRS- 412 (600)
Q Consensus 335 DEah~l~~-~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~- 412 (600)
||||.|.+ ..|...+..|++.+|..+|++.||||.|..+..++..+| .+|..+.....+.. ...+.+++.......
T Consensus 174 DEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~m-rdp~lVr~n~~d~~-L~GikQyv~~~~s~nn 251 (980)
T KOG4284|consen 174 DEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFM-RDPALVRFNADDVQ-LFGIKQYVVAKCSPNN 251 (980)
T ss_pred ccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHh-cccceeecccCCce-eechhheeeeccCCcc
Confidence 99999998 568999999999999999999999999999999999999 78888877766543 344566665554432
Q ss_pred -------hHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEe
Q 039378 413 -------RDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVA 485 (600)
Q Consensus 413 -------~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLva 485 (600)
+.+.|-.++..+ +-...||||+....|+-++.+|...|+.+.++.|.|.+++|..+++.++.-.++|||+
T Consensus 252 sveemrlklq~L~~vf~~i---py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 252 SVEEMRLKLQKLTHVFKSI---PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred hHHHHHHHHHHHHHHHhhC---chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEe
Confidence 223333333332 3457899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcH
Q 039378 486 TDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNK 538 (600)
Q Consensus 486 T~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~ 538 (600)
||+.+||||-++|+.|||.|+|.+..+|.||||||||.|..|.+++|+.....
T Consensus 329 TDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 329 TDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999999999999999999999999999987654
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.4e-50 Score=437.00 Aligned_cols=324 Identities=19% Similarity=0.271 Sum_probs=251.5
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
||..++|+|.++|+.++.|+|+|+++|||+|||+||++|++.. ++.+|||+|+++|+.++...+..
T Consensus 457 G~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------------~GiTLVISPLiSLmqDQV~~L~~ 522 (1195)
T PLN03137 457 GNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------------PGITLVISPLVSLIQDQIMNLLQ 522 (1195)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------------CCcEEEEeCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999853 23489999999999866555555
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHh------cCCcEEEEchHHHHH--HHHcc---CCCccceEEEEEcccchhhcCC-
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQITALR------SGVDIVIGTPGRLID--LIEMN---VCHLSEVSFVVLDEADRMLDMG- 344 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~l~------~~~~Iiv~Tp~~l~~--~l~~~---~~~l~~~~~lViDEah~l~~~~- 344 (600)
. ++....+.++.....+...+. ..++||++||++|.. .+... ......+.+|||||||++++||
T Consensus 523 ~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGh 598 (1195)
T PLN03137 523 A----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGH 598 (1195)
T ss_pred C----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhccc
Confidence 3 588888999887766544432 358999999999852 11111 1123458999999999999998
Q ss_pred -ChHHHHHH--HHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcc-hHHHHHHH
Q 039378 345 -FEEPVRFI--LSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRS-RDQRLLAL 420 (600)
Q Consensus 345 -~~~~~~~i--l~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 420 (600)
|...+..+ +....+..++++||||++..+...+...+......+...... . .++ ++....... ....+..+
T Consensus 599 DFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~--R-pNL--~y~Vv~k~kk~le~L~~~ 673 (1195)
T PLN03137 599 DFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFN--R-PNL--WYSVVPKTKKCLEDIDKF 673 (1195)
T ss_pred chHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccC--c-cce--EEEEeccchhHHHHHHHH
Confidence 55555442 333345678999999999998876666554333333322211 1 111 222222221 12233333
Q ss_pred HHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCE
Q 039378 421 LEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEV 500 (600)
Q Consensus 421 l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~ 500 (600)
+... ......||||.++..++.++..|...|+.+..+||+|++.+|..+++.|..|+++|||||+++++|||+|+|++
T Consensus 674 I~~~--~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~ 751 (1195)
T PLN03137 674 IKEN--HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRF 751 (1195)
T ss_pred HHhc--ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcE
Confidence 3321 12457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHH
Q 039378 501 VINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELV 545 (600)
Q Consensus 501 VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~ 545 (600)
||||++|.+++.|+||+|||||.|..|.|++||+..|...+..++
T Consensus 752 VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 752 VIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred EEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999988876665554
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.6e-49 Score=419.10 Aligned_cols=328 Identities=21% Similarity=0.304 Sum_probs=251.3
Q ss_pred HhhcCCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHH
Q 039378 193 GCCKNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYD 272 (600)
Q Consensus 193 ~~~~~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~ 272 (600)
....||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. ++.+|||+||++|+.|+..
T Consensus 4 ~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------------~~~~lVi~P~~~L~~dq~~ 69 (470)
T TIGR00614 4 KTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------------DGITLVISPLISLMEDQVL 69 (470)
T ss_pred HhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------------CCcEEEEecHHHHHHHHHH
Confidence 33449999999999999999999999999999999999999998752 2347999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCChHHHH---HHHh-cCCcEEEEchHHHHHHHH-ccCC-CccceEEEEEcccchhhcCCC-
Q 039378 273 VLNDAGKPCGVKSVCVYGGTSKQPQI---TALR-SGVDIVIGTPGRLIDLIE-MNVC-HLSEVSFVVLDEADRMLDMGF- 345 (600)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~~~~~---~~l~-~~~~Iiv~Tp~~l~~~l~-~~~~-~l~~~~~lViDEah~l~~~~~- 345 (600)
.+..++ +....+.++....... ..+. ..++|+++||+++..... ...+ ...++++|||||||++++||+
T Consensus 70 ~l~~~g----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 70 QLKASG----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 888653 6666666666544322 2222 348999999999754220 0111 467899999999999999874
Q ss_pred -hHHHHH---HHHhcCcCCcEEEEeccCChhHHHHHHHhcCC-CCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHH
Q 039378 346 -EEPVRF---ILSKISLARQMVMFSATWPIEVHKLAEEYMDP-NPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLAL 420 (600)
Q Consensus 346 -~~~~~~---il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 420 (600)
...+.. +...+ +..++++||||+++.+...+...+.. .+..+.... . ..++. +............+..+
T Consensus 146 fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~-~---r~nl~-~~v~~~~~~~~~~l~~~ 219 (470)
T TIGR00614 146 FRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF-D---RPNLY-YEVRRKTPKILEDLLRF 219 (470)
T ss_pred cHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC-C---CCCcE-EEEEeCCccHHHHHHHH
Confidence 444433 33333 46789999999999887665555432 333332221 1 11111 11111111223334444
Q ss_pred HHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCE
Q 039378 421 LEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEV 500 (600)
Q Consensus 421 l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~ 500 (600)
+.. ...+..+||||++++.++.++..|...|+.+..+||+|++.+|..+++.|+.|.++|||||+++++|||+|+|++
T Consensus 220 l~~--~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~ 297 (470)
T TIGR00614 220 IRK--EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRF 297 (470)
T ss_pred HHH--hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceE
Confidence 432 123456799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHH
Q 039378 501 VINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546 (600)
Q Consensus 501 VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~ 546 (600)
||||++|.++..|+||+|||||.|..|.|++||++.|...++.++.
T Consensus 298 VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 298 VIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred EEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887766654
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=7.1e-48 Score=418.39 Aligned_cols=330 Identities=19% Similarity=0.310 Sum_probs=253.8
Q ss_pred CHHHHHhhcCCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHH
Q 039378 188 PDDVLGCCKNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELA 267 (600)
Q Consensus 188 ~~~l~~~~~~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La 267 (600)
...++....||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. ...+|||+|+++|+
T Consensus 13 ~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------------~g~tlVisPl~sL~ 78 (607)
T PRK11057 13 AKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------------DGLTLVVSPLISLM 78 (607)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------------CCCEEEEecHHHHH
Confidence 3445555559999999999999999999999999999999999999998853 12379999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCCChHHHHHH---Hh-cCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcC
Q 039378 268 DQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITA---LR-SGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM 343 (600)
Q Consensus 268 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~ 343 (600)
.|+.+.+..++ +....+.++......... +. ...+|+++||++|........+...++++|||||||++.+|
T Consensus 79 ~dqv~~l~~~g----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 79 KDQVDQLLANG----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHHcC----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccc
Confidence 99999988764 666666666655443322 22 34789999999987422222234457899999999999998
Q ss_pred CC--hHHHHH---HHHhcCcCCcEEEEeccCChhHHHHHHHhcC-CCCeEEEECCcccccCCCeeEEEEEecCcchHHHH
Q 039378 344 GF--EEPVRF---ILSKISLARQMVMFSATWPIEVHKLAEEYMD-PNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRL 417 (600)
Q Consensus 344 ~~--~~~~~~---il~~~~~~~q~i~~SATl~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 417 (600)
|+ ...+.. +...+ +..+++++|||++..+...+...+. ..|.. ...... . .++ .+...........+
T Consensus 155 G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~-~~~~~~--r-~nl--~~~v~~~~~~~~~l 227 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLI-QISSFD--R-PNI--RYTLVEKFKPLDQL 227 (607)
T ss_pred cCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEE-EECCCC--C-Ccc--eeeeeeccchHHHH
Confidence 74 444333 33333 4678999999999887654444442 33333 222211 1 111 11222222233334
Q ss_pred HHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCC
Q 039378 418 LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497 (600)
Q Consensus 418 ~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~ 497 (600)
..++. ...+.++||||+++..++.++..|...++.+..+||+|++.+|..+++.|+.|.++|||||+++++|||+|+
T Consensus 228 ~~~l~---~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~ 304 (607)
T PRK11057 228 MRYVQ---EQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPN 304 (607)
T ss_pred HHHHH---hcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCC
Confidence 33333 334678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHH
Q 039378 498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELV 545 (600)
Q Consensus 498 v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~ 545 (600)
|++|||||+|.|...|+||+|||||.|..|.|++||++.|...++.+.
T Consensus 305 V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred cCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999877665543
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2e-46 Score=408.69 Aligned_cols=327 Identities=24% Similarity=0.350 Sum_probs=256.3
Q ss_pred HHhhcCCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHH
Q 039378 192 LGCCKNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIY 271 (600)
Q Consensus 192 ~~~~~~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~ 271 (600)
+....||..++|+|.++|+.+++|+|+++++|||+|||++|++|++.. ...++||+|+++|+.|+.
T Consensus 5 l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------------~g~~lVisPl~sL~~dq~ 70 (591)
T TIGR01389 5 LKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------------KGLTVVISPLISLMKDQV 70 (591)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------------CCcEEEEcCCHHHHHHHH
Confidence 444459999999999999999999999999999999999999998742 123799999999999999
Q ss_pred HHHHHhcCCCCceEEEEeCCCChHHHHHH---H-hcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCC--C
Q 039378 272 DVLNDAGKPCGVKSVCVYGGTSKQPQITA---L-RSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMG--F 345 (600)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---l-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~--~ 345 (600)
+.+..+ ++.+..+.++......... + ....+|+++||++|........+...++++|||||||++.+|| |
T Consensus 71 ~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~f 146 (591)
T TIGR01389 71 DQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDF 146 (591)
T ss_pred HHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCcc
Confidence 998886 3667777777665543322 2 2458999999999965333334456789999999999999987 4
Q ss_pred hHHHHH---HHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHH
Q 039378 346 EEPVRF---ILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLE 422 (600)
Q Consensus 346 ~~~~~~---il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 422 (600)
...+.. +...++ ..+++++|||++..+...+...+......+...... . .++ .+.......+...+..++.
T Consensus 147 rp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~--r-~nl--~~~v~~~~~~~~~l~~~l~ 220 (591)
T TIGR01389 147 RPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITSFD--R-PNL--RFSVVKKNNKQKFLLDYLK 220 (591)
T ss_pred HHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCC--C-CCc--EEEEEeCCCHHHHHHHHHH
Confidence 444433 334444 345999999999988876666654333222222211 1 111 2222233344555555554
Q ss_pred HHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEE
Q 039378 423 KYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVI 502 (600)
Q Consensus 423 ~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI 502 (600)
.. .+.++||||+++..++.++..|...++++..+||+|+..+|..+++.|..|.++|||||+++++|||+|++++||
T Consensus 221 ~~---~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI 297 (591)
T TIGR01389 221 KH---RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVI 297 (591)
T ss_pred hc---CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEE
Confidence 32 357899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHH
Q 039378 503 NYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELV 545 (600)
Q Consensus 503 ~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~ 545 (600)
||++|.|+..|+||+|||||.|..|.|++||++.|...+..++
T Consensus 298 ~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 298 HYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred EcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877655544
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.7e-45 Score=413.15 Aligned_cols=344 Identities=22% Similarity=0.273 Sum_probs=253.1
Q ss_pred CCHHHHHhhc-CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHH
Q 039378 187 LPDDVLGCCK-NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRE 265 (600)
Q Consensus 187 l~~~l~~~~~-~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~ 265 (600)
+++.+...+. +|..|+|+|.++|+.+++|+|++++||||||||++|.+|++.++....... ....++++|||+|||+
T Consensus 18 l~~~v~~~~~~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~--~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKEKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREG--ELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHHccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcccc--CCCCCeEEEEEcCHHH
Confidence 5566666665 889999999999999999999999999999999999999999987643211 1134678999999999
Q ss_pred HHHHHHHHHHH-------h----cCCC-CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCC--CccceEE
Q 039378 266 LADQIYDVLND-------A----GKPC-GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC--HLSEVSF 331 (600)
Q Consensus 266 La~q~~~~~~~-------~----~~~~-~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~--~l~~~~~ 331 (600)
|+.|+++.+.. + +... ++++...+|+.........+...++|+||||++|..++....+ .+.++++
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~ 175 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCE
Confidence 99999876542 2 2233 6788888888887777777777899999999999877754432 4788999
Q ss_pred EEEcccchhhcCCChHHHHHHHHh----cCcCCcEEEEeccCChhHHHHHHHhcC------CCCeEEEECCcccccCCCe
Q 039378 332 VVLDEADRMLDMGFEEPVRFILSK----ISLARQMVMFSATWPIEVHKLAEEYMD------PNPVKVVVGSEDLAANHDV 401 (600)
Q Consensus 332 lViDEah~l~~~~~~~~~~~il~~----~~~~~q~i~~SATl~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~ 401 (600)
|||||+|.+.+..++..+..++.. .....|++++|||+++. ..+...... ..+..+..... .....+
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~~--~k~~~i 252 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDARF--VKPFDI 252 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccCC--CccceE
Confidence 999999999977666665554433 33567999999999762 233322211 11222221111 000000
Q ss_pred eEEE-----EEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC------CCeEEEEcCCCCHHHHHH
Q 039378 402 MQIV-----EVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS------GWKVVAIHGKKAQHERTK 470 (600)
Q Consensus 402 ~~~~-----~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------~~~~~~l~~~~~~~~r~~ 470 (600)
.... ...........+...+..+.. ..+++||||+|+..++.++..|... +..+..+||+|++.+|..
T Consensus 253 ~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~-~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ 331 (876)
T PRK13767 253 KVISPVDDLIHTPAEEISEALYETLHELIK-EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLE 331 (876)
T ss_pred EEeccCccccccccchhHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHH
Confidence 0000 001111122333444443332 2578999999999999999999863 467999999999999999
Q ss_pred HHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCC-CCccEEEEEEcCC
Q 039378 471 SLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRA-GKKGVSHTFFTNH 536 (600)
Q Consensus 471 ~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~-g~~g~~~~~~~~~ 536 (600)
+++.|++|.++|||||+++++|||+|++++||+|+.|.++..|+||+||+||. |..+.++++....
T Consensus 332 ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 332 VEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred HHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999986 4444555554443
No 42
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-47 Score=344.05 Aligned_cols=332 Identities=30% Similarity=0.482 Sum_probs=287.5
Q ss_pred cccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceE
Q 039378 180 KSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257 (600)
Q Consensus 180 ~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~ 257 (600)
..|.+.-|.|+++.++. ||.+|+.+|.++||..+-|-|++++|..|.|||.+|++..++.+-.... ...+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g--------~vsv 113 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDG--------QVSV 113 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCC--------eEEE
Confidence 35778889999999987 9999999999999999999999999999999999999988887643322 2347
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCC-CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcc
Q 039378 258 LVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDE 336 (600)
Q Consensus 258 liv~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDE 336 (600)
|++|.||+||.|+.++..++.++. ++++.+.+||.........++..++|+|+|||+++.+.+...+++.+++..|+||
T Consensus 114 lvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDE 193 (387)
T KOG0329|consen 114 LVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDE 193 (387)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhh
Confidence 999999999999999999888775 4889999999999988888998999999999999999999999999999999999
Q ss_pred cchhhcC-CChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHH
Q 039378 337 ADRMLDM-GFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ 415 (600)
Q Consensus 337 ah~l~~~-~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (600)
||.|+++ .....+..|.+..+...|+++||||++.+++..++.|+ .+|..+.+..+..-..+.+.+++.......+..
T Consensus 194 cdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFm-QdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNr 272 (387)
T KOG0329|consen 194 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFM-QDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNR 272 (387)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhh-cCchhhhccchhhhhhhhHHHHHHhhhhhhhhh
Confidence 9999874 46678889999999999999999999999999999999 899999998887777788888888888888888
Q ss_pred HHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCC
Q 039378 416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495 (600)
Q Consensus 416 ~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi 495 (600)
++.++|..+. -..++||+.|...+ + | ..+ ||||++++||+||
T Consensus 273 kl~dLLd~Le---FNQVvIFvKsv~Rl---------------------~----------f---~kr-~vat~lfgrgmdi 314 (387)
T KOG0329|consen 273 KLNDLLDVLE---FNQVVIFVKSVQRL---------------------S----------F---QKR-LVATDLFGRGMDI 314 (387)
T ss_pred hhhhhhhhhh---hcceeEeeehhhhh---------------------h----------h---hhh-hHHhhhhccccCc
Confidence 8888888764 56899999887650 0 3 123 8999999999999
Q ss_pred CCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCc-HhHHHHHHHHHHHhcCCCcHH
Q 039378 496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN-KALAGELVNVLREARQVVPDA 558 (600)
Q Consensus 496 ~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d-~~~~~~i~~~l~~~~~~ip~~ 558 (600)
..++.|||||+|.++.+|+||+|||||.|..|.+++|++..+ ..++..+.+-..-...++|+.
T Consensus 315 ervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 315 ERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred ccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 999999999999999999999999999999999999998764 445555544444444555554
No 43
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-45 Score=410.76 Aligned_cols=337 Identities=21% Similarity=0.313 Sum_probs=256.0
Q ss_pred ccccCCCCHHHHHhhc--CCCCCcHHHHHHhhh-hhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceE
Q 039378 181 SFTESKLPDDVLGCCK--NFKNPSPIQSHAWPF-LLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257 (600)
Q Consensus 181 ~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~-il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~ 257 (600)
.|++++||+.+++.+. ||.+|+|+|.++++. ++.|+|++++||||||||++|.+|++.++.. +.++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----------~~ka 70 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----------GGKA 70 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----------CCcE
Confidence 4788899999999987 899999999999998 7789999999999999999999999988753 3358
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEccc
Q 039378 258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEA 337 (600)
Q Consensus 258 liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEa 337 (600)
|||+|+++||.|+++.|.++.. .++++..++|+...... ....++|+|+||+++..++.+....+.++++||+||+
T Consensus 71 l~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~ 146 (737)
T PRK02362 71 LYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEV 146 (737)
T ss_pred EEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECc
Confidence 9999999999999999998754 47888888887654332 2235899999999999888866566889999999999
Q ss_pred chhhcCCChHHHHHHHHhc---CcCCcEEEEeccCChhHHHHHHHhcCCC-------CeEEEECCcccccCCCeeEEEEE
Q 039378 338 DRMLDMGFEEPVRFILSKI---SLARQMVMFSATWPIEVHKLAEEYMDPN-------PVKVVVGSEDLAANHDVMQIVEV 407 (600)
Q Consensus 338 h~l~~~~~~~~~~~il~~~---~~~~q~i~~SATl~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~ 407 (600)
|.+.+.+++..++.++..+ ....|+|+||||++.. ..+. .++... |+.+..+... ............
T Consensus 147 H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la-~wl~~~~~~~~~rpv~l~~~v~~-~~~~~~~~~~~~ 223 (737)
T PRK02362 147 HLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELA-DWLDAELVDSEWRPIDLREGVFY-GGAIHFDDSQRE 223 (737)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHH-HHhCCCcccCCCCCCCCeeeEec-CCeecccccccc
Confidence 9999888888888876655 4668999999999753 3333 223211 1111100000 000000000000
Q ss_pred ecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC-----------------------------------
Q 039378 408 LDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS----------------------------------- 452 (600)
Q Consensus 408 ~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----------------------------------- 452 (600)
.....+. ....++..... .++++||||+++..+..++..|...
T Consensus 224 ~~~~~~~-~~~~~~~~~~~-~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~ 301 (737)
T PRK02362 224 VEVPSKD-DTLNLVLDTLE-EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADC 301 (737)
T ss_pred CCCccch-HHHHHHHHHHH-cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHH
Confidence 1111111 22222222221 3679999999999999988877542
Q ss_pred -CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEE----cC-----CCCChhhHHHHhhhccC
Q 039378 453 -GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVIN----YS-----FPLTTEDYVHRIGRTGR 522 (600)
Q Consensus 453 -~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d-----~p~s~~~y~qr~GR~gR 522 (600)
...++.+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||
T Consensus 302 l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR 381 (737)
T PRK02362 302 VAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGR 381 (737)
T ss_pred HHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCC
Confidence 136899999999999999999999999999999999999999999999997 76 68899999999999999
Q ss_pred CCCc--cEEEEEEcCCc
Q 039378 523 AGKK--GVSHTFFTNHN 537 (600)
Q Consensus 523 ~g~~--g~~~~~~~~~d 537 (600)
.|.. |.|+++....+
T Consensus 382 ~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 382 PGLDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCCCceEEEEecCch
Confidence 9875 88998886653
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.8e-44 Score=388.38 Aligned_cols=317 Identities=19% Similarity=0.211 Sum_probs=242.6
Q ss_pred hcCCCCCcHHHHHHhhhhhcCC-cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEE-EcccHHHHHHHHH
Q 039378 195 CKNFKNPSPIQSHAWPFLLNGR-DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLV-LSPTRELADQIYD 272 (600)
Q Consensus 195 ~~~~~~~~~~Q~~~i~~il~~~-d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~li-v~Ptr~La~q~~~ 272 (600)
+.||. |||||.++|+.++.|+ ++++++|||||||.+|.++++.. ... ...++.|| ++|||+|+.|+++
T Consensus 11 ~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~--------~~~~~rLv~~vPtReLa~Qi~~ 80 (844)
T TIGR02621 11 LHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG--------AKVPRRLVYVVNRRTVVDQVTE 80 (844)
T ss_pred HhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc--------ccccceEEEeCchHHHHHHHHH
Confidence 34888 9999999999999998 57788999999999765544422 111 12445565 6699999999999
Q ss_pred HHHHhcCCC-----------------------CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCC-----
Q 039378 273 VLNDAGKPC-----------------------GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC----- 324 (600)
Q Consensus 273 ~~~~~~~~~-----------------------~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~----- 324 (600)
.+.+++..+ ++++..++||.....++..+..+++|||+|++.+ .+..+
T Consensus 81 ~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i----~sr~L~~gYg 156 (844)
T TIGR02621 81 EAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMI----GSRLLFSGYG 156 (844)
T ss_pred HHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHH----cCCccccccc
Confidence 999988644 4888999999999999999999999999996544 33333
Q ss_pred -----------CccceEEEEEcccchhhcCCChHHHHHHHHhc--Cc---CCcEEEEeccCChhHHHHHHHhcCCCCeEE
Q 039378 325 -----------HLSEVSFVVLDEADRMLDMGFEEPVRFILSKI--SL---ARQMVMFSATWPIEVHKLAEEYMDPNPVKV 388 (600)
Q Consensus 325 -----------~l~~~~~lViDEah~l~~~~~~~~~~~il~~~--~~---~~q~i~~SATl~~~~~~~~~~~~~~~~~~i 388 (600)
.+.++++||||||| ++++|...+..|+..+ +. .+|+++||||++..+..+...++ .++..+
T Consensus 157 ~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~-~~p~~i 233 (844)
T TIGR02621 157 CGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLS-AEDYKH 233 (844)
T ss_pred cccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHc-cCCcee
Confidence 26889999999999 6788999999999964 33 26999999999988888777766 455555
Q ss_pred EECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHH
Q 039378 389 VVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHER 468 (600)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r 468 (600)
.+...... ...+.+++ ......+...+...+.......++++|||||++..+..++..|...++ ..+||+|++.+|
T Consensus 234 ~V~~~~l~-a~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR 309 (844)
T TIGR02621 234 PVLKKRLA-AKKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAER 309 (844)
T ss_pred eccccccc-ccceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHH
Confidence 44433222 22333332 222233333334333333334467899999999999999999998876 899999999999
Q ss_pred H-----HHHHHHhc----CC-------CCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCcc-EEEE
Q 039378 469 T-----KSLSLFKE----GT-------CPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKG-VSHT 531 (600)
Q Consensus 469 ~-----~~~~~F~~----g~-------~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g-~~~~ 531 (600)
. .+++.|+. |. ..|||||+++++||||+. ++||++..| .+.|+||+||+||.|+.| ..++
T Consensus 310 ~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~ 386 (844)
T TIGR02621 310 DDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIA 386 (844)
T ss_pred hhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEE
Confidence 9 88999987 44 679999999999999986 899998877 479999999999999854 4455
Q ss_pred EEcC
Q 039378 532 FFTN 535 (600)
Q Consensus 532 ~~~~ 535 (600)
++..
T Consensus 387 vv~~ 390 (844)
T TIGR02621 387 VVHL 390 (844)
T ss_pred EEee
Confidence 5543
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.6e-44 Score=397.52 Aligned_cols=338 Identities=20% Similarity=0.264 Sum_probs=257.5
Q ss_pred ccccCCCCHHHHHhhc--CCCCCcHHHHHHhhh-hhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceE
Q 039378 181 SFTESKLPDDVLGCCK--NFKNPSPIQSHAWPF-LLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257 (600)
Q Consensus 181 ~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~-il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~ 257 (600)
.|.++++++.+.+.+. ||.+|+|+|.++++. ++.|+|+++++|||||||++|.+|++.++... +.++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----------~~~~ 71 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----------GGKA 71 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----------CCeE
Confidence 4678899999999887 999999999999985 78999999999999999999999999887643 3458
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEccc
Q 039378 258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEA 337 (600)
Q Consensus 258 liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEa 337 (600)
|||+|+++|+.|+++.+..+. ..++++..++|+...... ....++|+|+||+++..++......++++++||+||+
T Consensus 72 l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~ 147 (720)
T PRK00254 72 VYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEI 147 (720)
T ss_pred EEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCc
Confidence 999999999999999998864 357888888888765432 2245899999999998888766667889999999999
Q ss_pred chhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCC-eeEEEEEecCcch---
Q 039378 338 DRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHD-VMQIVEVLDDRSR--- 413 (600)
Q Consensus 338 h~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~--- 413 (600)
|.+.+.+++..+..++..+....|+|++|||++.. ..+.. ++...... ........... ..+..........
T Consensus 148 H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~--~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T PRK00254 148 HLIGSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVV--SDWRPVKLRKGVFYQGFLFWEDGKIERF 223 (720)
T ss_pred CccCCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCcccc--CCCCCCcceeeEecCCeeeccCcchhcc
Confidence 99998889999999999998889999999999753 44443 44222110 00000000000 0000111111110
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHh---------------------------------CCCeEEEEc
Q 039378 414 DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRR---------------------------------SGWKVVAIH 460 (600)
Q Consensus 414 ~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~---------------------------------~~~~~~~l~ 460 (600)
...+..++..... .++++||||+++..+..++..|.. ....+..+|
T Consensus 224 ~~~~~~~~~~~i~-~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hH 302 (720)
T PRK00254 224 PNSWESLVYDAVK-KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHH 302 (720)
T ss_pred hHHHHHHHHHHHH-hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeC
Confidence 1122222322222 367899999999999887766532 123589999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEE-------cCCCC-ChhhHHHHhhhccCCC--CccEEE
Q 039378 461 GKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVIN-------YSFPL-TTEDYVHRIGRTGRAG--KKGVSH 530 (600)
Q Consensus 461 ~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~-------~d~p~-s~~~y~qr~GR~gR~g--~~g~~~ 530 (600)
|+|++.+|..+++.|++|.++|||||+++++|+|+|++++||. ++.|. ...+|+||+|||||.| ..|.++
T Consensus 303 agl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~i 382 (720)
T PRK00254 303 AGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAI 382 (720)
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEE
Confidence 9999999999999999999999999999999999999999994 55443 5679999999999965 569999
Q ss_pred EEEcCCc
Q 039378 531 TFFTNHN 537 (600)
Q Consensus 531 ~~~~~~d 537 (600)
++....+
T Consensus 383 i~~~~~~ 389 (720)
T PRK00254 383 IVATTEE 389 (720)
T ss_pred EEecCcc
Confidence 9987654
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5.7e-43 Score=388.14 Aligned_cols=317 Identities=20% Similarity=0.227 Sum_probs=245.2
Q ss_pred CHHHHHhhc---CCCCCcHHHHHHhhhhhcC------CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEE
Q 039378 188 PDDVLGCCK---NFKNPSPIQSHAWPFLLNG------RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCL 258 (600)
Q Consensus 188 ~~~l~~~~~---~~~~~~~~Q~~~i~~il~~------~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~l 258 (600)
+..++..+. +| .|||+|.++|+.++++ .|++++|+||+|||.+|++|++..+.. +++++
T Consensus 437 ~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-----------g~qvl 504 (926)
T TIGR00580 437 DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-----------GKQVA 504 (926)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-----------CCeEE
Confidence 334444443 66 5999999999999975 689999999999999999998877654 34589
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHH---HHHHhc-CCcEEEEchHHHHHHHHccCCCccceEEEEE
Q 039378 259 VLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQ---ITALRS-GVDIVIGTPGRLIDLIEMNVCHLSEVSFVVL 334 (600)
Q Consensus 259 iv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVi 334 (600)
|++||++||.|+++.|.++....++++..+.|+....+. ...+.. .++|||+||..+ ...+.+.++++|||
T Consensus 505 vLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVI 579 (926)
T TIGR00580 505 VLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLII 579 (926)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEe
Confidence 999999999999999999888888888888887764433 233444 489999999533 23456889999999
Q ss_pred cccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchH
Q 039378 335 DEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414 (600)
Q Consensus 335 DEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (600)
||+|++ +......+..++...|+++||||+.+....+....+ .++..+...+.. ...+..++.... .
T Consensus 580 DEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~-~d~s~I~~~p~~---R~~V~t~v~~~~----~ 646 (926)
T TIGR00580 580 DEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGI-RDLSIIATPPED---RLPVRTFVMEYD----P 646 (926)
T ss_pred eccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcC-CCcEEEecCCCC---ccceEEEEEecC----H
Confidence 999984 333455666777788999999998776555443333 444444433221 112333322211 1
Q ss_pred HHHHH-HHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecccccc
Q 039378 415 QRLLA-LLEKYHKSQRNRVLVFALYQLEADRLENMLRRS--GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAAR 491 (600)
Q Consensus 415 ~~l~~-~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~ 491 (600)
..+.. ++..+. .+++++|||+++..++.++..|... ++++..+||+|++.+|..++.+|++|+++|||||+++++
T Consensus 647 ~~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~ 724 (926)
T TIGR00580 647 ELVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIET 724 (926)
T ss_pred HHHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhc
Confidence 12222 222222 3679999999999999999999885 789999999999999999999999999999999999999
Q ss_pred CCCCCCcCEEEEcCCCC-ChhhHHHHhhhccCCCCccEEEEEEcCC
Q 039378 492 GLDIPDVEVVINYSFPL-TTEDYVHRIGRTGRAGKKGVSHTFFTNH 536 (600)
Q Consensus 492 Gldi~~v~~VI~~d~p~-s~~~y~qr~GR~gR~g~~g~~~~~~~~~ 536 (600)
|||+|++++||+++.|. +..+|+||+||+||.|+.|.|++++...
T Consensus 725 GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 725 GIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99999999999999874 6779999999999999999999999764
No 47
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-42 Score=359.09 Aligned_cols=332 Identities=24% Similarity=0.376 Sum_probs=260.3
Q ss_pred HHHhhcCCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHH
Q 039378 191 VLGCCKNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQI 270 (600)
Q Consensus 191 l~~~~~~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~ 270 (600)
++....||..++|-|.++|..+++++|+++..|||.||++||++|++.. .+.+|||.|..+|+..+
T Consensus 8 ~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--------------~G~TLVVSPLiSLM~DQ 73 (590)
T COG0514 8 VLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--------------EGLTLVVSPLISLMKDQ 73 (590)
T ss_pred HHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--------------CCCEEEECchHHHHHHH
Confidence 3444559999999999999999999999999999999999999998865 11379999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHHHHH---Hhc-CCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCC--
Q 039378 271 YDVLNDAGKPCGVKSVCVYGGTSKQPQITA---LRS-GVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMG-- 344 (600)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~-- 344 (600)
.+.+...+ +.+..+.+..+..+.... +.. ..++++-+|++|..--....+.-..+.++||||||++++||
T Consensus 74 V~~l~~~G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhd 149 (590)
T COG0514 74 VDQLEAAG----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHD 149 (590)
T ss_pred HHHHHHcC----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCc
Confidence 99888876 677777777665544332 333 37999999999965322222335578999999999999998
Q ss_pred ChHHHHHH---HHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHH
Q 039378 345 FEEPVRFI---LSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALL 421 (600)
Q Consensus 345 ~~~~~~~i---l~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 421 (600)
|++.+..+ ...++ +..++.+|||.++.+...+...+......+....-+. + ++. +...........+. ++
T Consensus 150 FRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR--p-Ni~--~~v~~~~~~~~q~~-fi 222 (590)
T COG0514 150 FRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR--P-NLA--LKVVEKGEPSDQLA-FL 222 (590)
T ss_pred cCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC--c-hhh--hhhhhcccHHHHHH-HH
Confidence 66666554 34444 6789999999999998877777655443333332211 1 111 11111111222233 33
Q ss_pred HHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEE
Q 039378 422 EKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVV 501 (600)
Q Consensus 422 ~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~V 501 (600)
........+..||||.|+..++.++..|...|+.+..+||+|+..+|..+.++|..++.+|+|||.++++|||.|+|++|
T Consensus 223 ~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfV 302 (590)
T COG0514 223 ATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFV 302 (590)
T ss_pred HhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEE
Confidence 32223345678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHH
Q 039378 502 INYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNV 547 (600)
Q Consensus 502 I~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~ 547 (600)
||||+|.|++.|+|-+|||||.|.+..|++||++.|......++..
T Consensus 303 iH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 303 IHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 9999999999999999999999999999999999998876665544
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.5e-41 Score=384.70 Aligned_cols=309 Identities=20% Similarity=0.217 Sum_probs=242.4
Q ss_pred CCCCCcHHHHHHhhhhhcC------CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNG------RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQI 270 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~------~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~ 270 (600)
+| .||++|.++|+.++.+ .|++++|+||+|||.+|+.+++..+.. +.+++||+||++||.|+
T Consensus 598 ~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-----------g~qvlvLvPT~eLA~Q~ 665 (1147)
T PRK10689 598 PF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-----------HKQVAVLVPTTLLAQQH 665 (1147)
T ss_pred CC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHH
Confidence 44 7999999999999987 799999999999999988887765432 45699999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHHHHHHh----cCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCCh
Q 039378 271 YDVLNDAGKPCGVKSVCVYGGTSKQPQITALR----SGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFE 346 (600)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~----~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~ 346 (600)
++.|.+.....++++.++.++.+...+...+. ..++|||+||+.| . ..+.+.++++|||||+|++ |+.
T Consensus 666 ~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEahrf---G~~ 737 (1147)
T PRK10689 666 YDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEEHRF---GVR 737 (1147)
T ss_pred HHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEechhhc---chh
Confidence 99999877777788888888877766554432 3589999999744 2 3446789999999999996 332
Q ss_pred HHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhh
Q 039378 347 EPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK 426 (600)
Q Consensus 347 ~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 426 (600)
....+..++..+|+++||||+++....+....+ .++..+...... ...+..+...... ......++..+.
T Consensus 738 --~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl-~d~~~I~~~p~~---r~~v~~~~~~~~~---~~~k~~il~el~- 807 (1147)
T PRK10689 738 --HKERIKAMRADVDILTLTATPIPRTLNMAMSGM-RDLSIIATPPAR---RLAVKTFVREYDS---LVVREAILREIL- 807 (1147)
T ss_pred --HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhC-CCcEEEecCCCC---CCCceEEEEecCc---HHHHHHHHHHHh-
Confidence 245567778889999999998887776666655 566666543322 1223333332221 111222333332
Q ss_pred cCCCeEEEEEeehhcHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEc
Q 039378 427 SQRNRVLVFALYQLEADRLENMLRRS--GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINY 504 (600)
Q Consensus 427 ~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~ 504 (600)
.+++++|||+++..+..++..|... +..+..+||+|++.+|.+++.+|++|+++|||||+++++|||+|++++||..
T Consensus 808 -r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 808 -RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred -cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEe
Confidence 2578999999999999999999887 7889999999999999999999999999999999999999999999999955
Q ss_pred CCC-CChhhHHHHhhhccCCCCccEEEEEEcCC
Q 039378 505 SFP-LTTEDYVHRIGRTGRAGKKGVSHTFFTNH 536 (600)
Q Consensus 505 d~p-~s~~~y~qr~GR~gR~g~~g~~~~~~~~~ 536 (600)
+.+ .+...|+||+||+||.|+.|.|++++...
T Consensus 887 ~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred cCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 443 35668999999999999999999888653
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.8e-42 Score=381.83 Aligned_cols=334 Identities=21% Similarity=0.276 Sum_probs=247.2
Q ss_pred ccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEE
Q 039378 181 SFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCL 258 (600)
Q Consensus 181 ~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~l 258 (600)
.|.++++++.+++.+. +|. ++|+|.++++.+..+++++++||||||||+++.++++..+... .+++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~-----------~k~v 69 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG-----------LKSI 69 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC-----------CcEE
Confidence 4678899999999886 564 9999999999999999999999999999999999988776542 3479
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccc
Q 039378 259 VLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEAD 338 (600)
Q Consensus 259 iv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah 338 (600)
|++|+++||.|+++.+.++. ..++++...+|+...... ....++|+|+||+++..++.+....+.++++||+||+|
T Consensus 70 ~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH 145 (674)
T PRK01172 70 YIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIH 145 (674)
T ss_pred EEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecch
Confidence 99999999999999998864 357788888887654322 22458999999999988887766668899999999999
Q ss_pred hhhcCCChHHHHHHHHhc---CcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEE-EEecCcc-h
Q 039378 339 RMLDMGFEEPVRFILSKI---SLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIV-EVLDDRS-R 413 (600)
Q Consensus 339 ~l~~~~~~~~~~~il~~~---~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~-~ 413 (600)
.+.+.+++..++.++..+ ....|+|++|||+++. ..+.. ++...... ...........+.... ....... .
T Consensus 146 ~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~~~--~~~r~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 146 IIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASLIK--SNFRPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred hccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCccC--CCCCCCCeEEEEEecCeeeecccccc
Confidence 998887888887776543 4668999999999753 44443 33222111 0000000000000000 0011111 1
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC-------------------------CCeEEEEcCCCCHHHH
Q 039378 414 DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS-------------------------GWKVVAIHGKKAQHER 468 (600)
Q Consensus 414 ~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------~~~~~~l~~~~~~~~r 468 (600)
...+..++.... ..++++||||+++..+..++..|... ...+..+||+|++.+|
T Consensus 222 ~~~~~~~i~~~~-~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR 300 (674)
T PRK01172 222 QVDINSLIKETV-NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQR 300 (674)
T ss_pred cccHHHHHHHHH-hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHH
Confidence 111333333322 23679999999999999999888643 1247889999999999
Q ss_pred HHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCC---------CCChhhHHHHhhhccCCCC--ccEEEEEEcCC
Q 039378 469 TKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSF---------PLTTEDYVHRIGRTGRAGK--KGVSHTFFTNH 536 (600)
Q Consensus 469 ~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~---------p~s~~~y~qr~GR~gR~g~--~g~~~~~~~~~ 536 (600)
..+++.|++|.++|||||+++++|+|+|+.. ||+++. |.++.+|.||+|||||.|. .|.++++....
T Consensus 301 ~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 301 RFIEEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 9999999999999999999999999999864 554442 5688899999999999985 56777776543
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=6.2e-41 Score=367.88 Aligned_cols=309 Identities=20% Similarity=0.298 Sum_probs=233.7
Q ss_pred CCCCCcHHHHHHhhhhhcC------CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNG------RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQI 270 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~------~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~ 270 (600)
+| .||++|.++++.+.++ .+++++|+||||||++|++|++..+.. +.+++|++||++||.|+
T Consensus 259 ~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-----------g~q~lilaPT~~LA~Q~ 326 (681)
T PRK10917 259 PF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-----------GYQAALMAPTEILAEQH 326 (681)
T ss_pred CC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-----------CCeEEEEeccHHHHHHH
Confidence 55 6999999999999876 379999999999999999999877642 45689999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHH---HHHHhc-CCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCCh
Q 039378 271 YDVLNDAGKPCGVKSVCVYGGTSKQPQ---ITALRS-GVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFE 346 (600)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~ 346 (600)
++.+.+++...++++..++|+...... ...+.. .++|+|+||+.+.+ ...+.++++|||||+|++..
T Consensus 327 ~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~---- 397 (681)
T PRK10917 327 YENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGV---- 397 (681)
T ss_pred HHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhH----
Confidence 999999998888999999999875433 334444 49999999988743 34578899999999998632
Q ss_pred HHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhh
Q 039378 347 EPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK 426 (600)
Q Consensus 347 ~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 426 (600)
.....+......+++++||||+.+....+.. +.......+...+. ....+.... .. ......+...+....
T Consensus 398 -~qr~~l~~~~~~~~iL~~SATp~prtl~~~~-~g~~~~s~i~~~p~---~r~~i~~~~--~~-~~~~~~~~~~i~~~~- 468 (681)
T PRK10917 398 -EQRLALREKGENPHVLVMTATPIPRTLAMTA-YGDLDVSVIDELPP---GRKPITTVV--IP-DSRRDEVYERIREEI- 468 (681)
T ss_pred -HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH-cCCCceEEEecCCC---CCCCcEEEE--eC-cccHHHHHHHHHHHH-
Confidence 2233344445568999999998765443322 22122222221111 111222222 22 222334444444332
Q ss_pred cCCCeEEEEEeehh--------cHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCC
Q 039378 427 SQRNRVLVFALYQL--------EADRLENMLRRS--GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP 496 (600)
Q Consensus 427 ~~~~~~lVF~~s~~--------~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~ 496 (600)
..+.+++|||+.++ .+..++..|... ++.+..+||+|++.+|..++++|++|+.+|||||+++++|||+|
T Consensus 469 ~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip 548 (681)
T PRK10917 469 AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVP 548 (681)
T ss_pred HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccC
Confidence 24679999999654 455667777665 47899999999999999999999999999999999999999999
Q ss_pred CcCEEEEcCCCC-ChhhHHHHhhhccCCCCccEEEEEEcC
Q 039378 497 DVEVVINYSFPL-TTEDYVHRIGRTGRAGKKGVSHTFFTN 535 (600)
Q Consensus 497 ~v~~VI~~d~p~-s~~~y~qr~GR~gR~g~~g~~~~~~~~ 535 (600)
++++||+++.|. +...|.||+||+||.|..|.|++++..
T Consensus 549 ~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 549 NATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred CCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 999999999986 578888999999999999999999963
No 51
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.3e-41 Score=362.31 Aligned_cols=338 Identities=25% Similarity=0.295 Sum_probs=267.2
Q ss_pred CCHHHHHhhc-CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHH
Q 039378 187 LPDDVLGCCK-NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRE 265 (600)
Q Consensus 187 l~~~l~~~~~-~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~ 265 (600)
+++.+.+.+. .|..|||.|.++||.+.+|+|++++||||||||+++.+|++..++.... .....+..||+|+|.|+
T Consensus 8 l~~~v~~~~~~~~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~---~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 8 LDPRVREWFKRKFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGK---GKLEDGIYALYISPLKA 84 (814)
T ss_pred cCHHHHHHHHHhcCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccC---CCCCCceEEEEeCcHHH
Confidence 6777877776 8999999999999999999999999999999999999999999998841 11234677999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc--CCCccceEEEEEcccchhhcC
Q 039378 266 LADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN--VCHLSEVSFVVLDEADRMLDM 343 (600)
Q Consensus 266 La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~--~~~l~~~~~lViDEah~l~~~ 343 (600)
|...+...+..++..+|+.+...+|+..........++.++|+|+||+.|.-++... .-.+.++++|||||.|.+.+.
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcc
Confidence 999999999999999999998888888888777788888999999999997776542 235889999999999999876
Q ss_pred CChHHHHHHHHhc---CcCCcEEEEeccCChhHHHHHHHhcCCC--CeEEEECCcccccCCCeeEEEEEecC------cc
Q 039378 344 GFEEPVRFILSKI---SLARQMVMFSATWPIEVHKLAEEYMDPN--PVKVVVGSEDLAANHDVMQIVEVLDD------RS 412 (600)
Q Consensus 344 ~~~~~~~~il~~~---~~~~q~i~~SATl~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~------~~ 412 (600)
-.+.++...+.++ ....|.|++|||..+. .. +..|+... +..+......... . +....+. ..
T Consensus 165 KRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~-varfL~g~~~~~~Iv~~~~~k~~--~---i~v~~p~~~~~~~~~ 237 (814)
T COG1201 165 KRGVQLALSLERLRELAGDFQRIGLSATVGPP-EE-VAKFLVGFGDPCEIVDVSAAKKL--E---IKVISPVEDLIYDEE 237 (814)
T ss_pred ccchhhhhhHHHHHhhCcccEEEeehhccCCH-HH-HHHHhcCCCCceEEEEcccCCcc--e---EEEEecCCccccccc
Confidence 5555554443333 2268999999998743 33 34454344 4444433222111 1 1111111 12
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCC-CeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecccccc
Q 039378 413 RDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSG-WKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAAR 491 (600)
Q Consensus 413 ~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~-~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~ 491 (600)
....+...+..+.+. ...+|||+||+..++.++..|...+ ..+..+||+++..+|..+.++|++|..+++|||..++-
T Consensus 238 ~~~~~~~~i~~~v~~-~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLEL 316 (814)
T COG1201 238 LWAALYERIAELVKK-HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLEL 316 (814)
T ss_pred hhHHHHHHHHHHHhh-cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhh
Confidence 233344444444443 3489999999999999999999886 89999999999999999999999999999999999999
Q ss_pred CCCCCCcCEEEEcCCCCChhhHHHHhhhccC-CCCccEEEEEEcC
Q 039378 492 GLDIPDVEVVINYSFPLTTEDYVHRIGRTGR-AGKKGVSHTFFTN 535 (600)
Q Consensus 492 Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR-~g~~g~~~~~~~~ 535 (600)
|||+.+++.||+|+.|.++..++||+||+|+ .|....++.+...
T Consensus 317 GIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 317 GIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999999999999999999986 5555666666655
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=8.5e-41 Score=358.71 Aligned_cols=314 Identities=16% Similarity=0.204 Sum_probs=229.5
Q ss_pred HHHHHHhhhhhcCCcEEEEecCCCCchhH---------hhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHH
Q 039378 203 PIQSHAWPFLLNGRDFIGIAKTGSGKTIA---------FGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDV 273 (600)
Q Consensus 203 ~~Q~~~i~~il~~~d~i~~a~TGsGKT~~---------~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~ 273 (600)
.+|.++++.++.++++|++|+||||||.+ |++|.+..+..-. .....++++|++|||+||.|+...
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-----~~~~~~~ilvt~PrreLa~qi~~~ 241 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-----PNFIERPIVLSLPRVALVRLHSIT 241 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-----cccCCcEEEEECcHHHHHHHHHHH
Confidence 57999999999999999999999999986 3333333322110 011245799999999999999999
Q ss_pred HHHhcCC---CCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHH
Q 039378 274 LNDAGKP---CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVR 350 (600)
Q Consensus 274 ~~~~~~~---~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~ 350 (600)
+.+.... .+..+.+.+||... ........+.+|+|+|++.. ...+.++++|||||||++...+ +.+.
T Consensus 242 i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL 311 (675)
T PHA02653 242 LLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIII 311 (675)
T ss_pred HHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHH
Confidence 8875543 35667888998763 22222233679999997631 1257889999999999998754 4455
Q ss_pred HHHHhc-CcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecC---------cchHHHHHHH
Q 039378 351 FILSKI-SLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDD---------RSRDQRLLAL 420 (600)
Q Consensus 351 ~il~~~-~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~ 420 (600)
.++..+ +..+|+++||||++.++..+ ..++ .++..+.+... ....+.+++..... ......+...
T Consensus 312 ~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~-~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~ 386 (675)
T PHA02653 312 AVARKHIDKIRSLFLMTATLEDDRDRI-KEFF-PNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTA 386 (675)
T ss_pred HHHHHhhhhcCEEEEEccCCcHhHHHH-HHHh-cCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHHHHHH
Confidence 555444 33469999999999888776 5677 46666665432 11233443322110 0111122333
Q ss_pred HHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHH-hcCCCCEEEeccccccCCCCCC
Q 039378 421 LEKYHKSQRNRVLVFALYQLEADRLENMLRRS--GWKVVAIHGKKAQHERTKSLSLF-KEGTCPLMVATDVAARGLDIPD 497 (600)
Q Consensus 421 l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~F-~~g~~~vLvaT~~~~~Gldi~~ 497 (600)
+.......++.+||||+++.+++.+++.|... ++.+..+||+|++. .+.+++| ++|+.+|||||++++||||||+
T Consensus 387 L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~ 464 (675)
T PHA02653 387 LKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRN 464 (675)
T ss_pred HHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccC
Confidence 33222223568999999999999999999887 68999999999975 4667777 6899999999999999999999
Q ss_pred cCEEEEcC---CCC---------ChhhHHHHhhhccCCCCccEEEEEEcCCcHh
Q 039378 498 VEVVINYS---FPL---------TTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539 (600)
Q Consensus 498 v~~VI~~d---~p~---------s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~ 539 (600)
|++||++| .|. |.++|.||+|||||. ++|.|+.|++..+..
T Consensus 465 V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 465 ATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLK 517 (675)
T ss_pred eeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhH
Confidence 99999998 554 788999999999999 799999999987753
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=7e-40 Score=357.44 Aligned_cols=309 Identities=19% Similarity=0.293 Sum_probs=229.0
Q ss_pred CCCCCcHHHHHHhhhhhcC------CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNG------RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQI 270 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~------~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~ 270 (600)
+| .||++|.++|+.++.+ .+.+++|+||||||++|++|++..+.. +.+++|++||++||.|+
T Consensus 233 pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----------g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 233 PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----------GYQVALMAPTEILAEQH 300 (630)
T ss_pred CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEECCHHHHHHHH
Confidence 67 7999999999999876 258999999999999999998877643 44589999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHH---HHHHhc-CCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCCh
Q 039378 271 YDVLNDAGKPCGVKSVCVYGGTSKQPQ---ITALRS-GVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFE 346 (600)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~ 346 (600)
++.+.+++...++++..++|+...... ...+.. .++|||+||+.+.+ ...+.++++|||||+|++..
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~---- 371 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGV---- 371 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccH----
Confidence 999999998889999999999876543 333333 48999999998753 34578899999999998532
Q ss_pred HHHHHHHHhcC--cCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHH
Q 039378 347 EPVRFILSKIS--LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKY 424 (600)
Q Consensus 347 ~~~~~il~~~~--~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 424 (600)
.+...++.... ..+++++||||+.+....+.. +.......+...+. ....+.... ..... ...+...+...
T Consensus 372 ~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~-~~~l~~~~i~~~p~---~r~~i~~~~--~~~~~-~~~~~~~i~~~ 444 (630)
T TIGR00643 372 EQRKKLREKGQGGFTPHVLVMSATPIPRTLALTV-YGDLDTSIIDELPP---GRKPITTVL--IKHDE-KDIVYEFIEEE 444 (630)
T ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh-cCCcceeeeccCCC---CCCceEEEE--eCcch-HHHHHHHHHHH
Confidence 11222333332 257899999997664433221 11111111111110 011122222 22222 23344444332
Q ss_pred hhcCCCeEEEEEeehh--------cHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCC
Q 039378 425 HKSQRNRVLVFALYQL--------EADRLENMLRRS--GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494 (600)
Q Consensus 425 ~~~~~~~~lVF~~s~~--------~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gld 494 (600)
. ..+.+++|||+.++ .+..++..|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||
T Consensus 445 l-~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvD 523 (630)
T TIGR00643 445 I-AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVD 523 (630)
T ss_pred H-HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcc
Confidence 2 23678999998763 455677777653 678999999999999999999999999999999999999999
Q ss_pred CCCcCEEEEcCCCC-ChhhHHHHhhhccCCCCccEEEEEEc
Q 039378 495 IPDVEVVINYSFPL-TTEDYVHRIGRTGRAGKKGVSHTFFT 534 (600)
Q Consensus 495 i~~v~~VI~~d~p~-s~~~y~qr~GR~gR~g~~g~~~~~~~ 534 (600)
+|++++||+++.|. +...|.||+||+||.|+.|.|++++.
T Consensus 524 iP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 524 VPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred cCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999999986 67888999999999999999999994
No 54
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6.2e-40 Score=372.39 Aligned_cols=297 Identities=23% Similarity=0.306 Sum_probs=232.9
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
|+ +|+++|+.++|.++.|+|++++||||+|||. |.++++..+... ++++|||+|||+|+.|+++.+..
T Consensus 78 G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~~----------g~~alIL~PTreLa~Qi~~~l~~ 145 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAKK----------GKKSYIIFPTRLLVEQVVEKLEK 145 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHhc----------CCeEEEEeccHHHHHHHHHHHHH
Confidence 66 8999999999999999999999999999996 556655444321 56699999999999999999999
Q ss_pred hcCCCCceEEEEeCCCCh-----HHHHHHHhc-CCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhc--------
Q 039378 277 AGKPCGVKSVCVYGGTSK-----QPQITALRS-GVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLD-------- 342 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~-----~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~-------- 342 (600)
++...++.+..++|+... ......+.. .++|+|+||++|.+++. .+...++++|||||||+|++
T Consensus 146 l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~ 223 (1176)
T PRK09401 146 FGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKL 223 (1176)
T ss_pred HhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhH
Confidence 998888887777776542 223334443 58999999999998876 34566799999999999986
Q ss_pred ---CCCh-HHHHHHHHhcCc------------------------CCcEEEEeccCChh-HHHHHHHhcCCCCeEEEECCc
Q 039378 343 ---MGFE-EPVRFILSKISL------------------------ARQMVMFSATWPIE-VHKLAEEYMDPNPVKVVVGSE 393 (600)
Q Consensus 343 ---~~~~-~~~~~il~~~~~------------------------~~q~i~~SATl~~~-~~~~~~~~~~~~~~~i~~~~~ 393 (600)
.||. ..+..++..++. .+|+++||||+++. +.. .++ ..+..+.++..
T Consensus 224 l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~-~~ll~~~v~~~ 299 (1176)
T PRK09401 224 LYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLF-RELLGFEVGSP 299 (1176)
T ss_pred HHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHh-hccceEEecCc
Confidence 5674 567777777654 67999999999874 332 112 23334444443
Q ss_pred ccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhc---HHHHHHHHHhCCCeEEEEcCCCCHHHHHH
Q 039378 394 DLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLE---ADRLENMLRRSGWKVVAIHGKKAQHERTK 470 (600)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~---~~~l~~~L~~~~~~~~~l~~~~~~~~r~~ 470 (600)
.. ...++.+.+.... .+...+..++..+ +.++||||++... ++.++..|...|+++..+||+| .+
T Consensus 300 ~~-~~rnI~~~yi~~~--~k~~~L~~ll~~l----~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~ 367 (1176)
T PRK09401 300 VF-YLRNIVDSYIVDE--DSVEKLVELVKRL----GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ER 367 (1176)
T ss_pred cc-ccCCceEEEEEcc--cHHHHHHHHHHhc----CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HH
Confidence 32 2334555554443 4556666666544 4589999999888 9999999999999999999999 23
Q ss_pred HHHHHhcCCCCEEEe----ccccccCCCCCC-cCEEEEcCCCC------ChhhHHHHhhhccCC
Q 039378 471 SLSLFKEGTCPLMVA----TDVAARGLDIPD-VEVVINYSFPL------TTEDYVHRIGRTGRA 523 (600)
Q Consensus 471 ~~~~F~~g~~~vLva----T~~~~~Gldi~~-v~~VI~~d~p~------s~~~y~qr~GR~gR~ 523 (600)
.+++|++|+++|||| |++++||||+|+ |++|||||+|. ....|.||+||+.+.
T Consensus 368 ~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 368 KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 459999999999999 699999999999 89999999998 678899999999744
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.6e-40 Score=374.73 Aligned_cols=304 Identities=22% Similarity=0.255 Sum_probs=222.7
Q ss_pred EEecCCCCchhHhhHHHHHHHHhcccCc--cCCCCCCceEEEEcccHHHHHHHHHHHHHhc------------CCCCceE
Q 039378 220 GIAKTGSGKTIAFGVPAMMHVLSNRKGK--AVGKRVNPLCLVLSPTRELADQIYDVLNDAG------------KPCGVKS 285 (600)
Q Consensus 220 ~~a~TGsGKT~~~~lp~l~~~~~~~~~~--~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~------------~~~~~~~ 285 (600)
|+||||||||++|.+|++..++...... ......+.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999998653210 0112236789999999999999999886411 1246888
Q ss_pred EEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc-CCCccceEEEEEcccchhhcCCChHHH----HHHHHhcCcCC
Q 039378 286 VCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN-VCHLSEVSFVVLDEADRMLDMGFEEPV----RFILSKISLAR 360 (600)
Q Consensus 286 ~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~lViDEah~l~~~~~~~~~----~~il~~~~~~~ 360 (600)
...+|+.....+...++..++|||+||++|..++.+. ...++++++|||||+|.|.+..++.++ ..+...++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8899998888777777778999999999998877543 346899999999999999976455444 34444455678
Q ss_pred cEEEEeccCChhHHHHHHHhcCC-CCeEEEECCcccccCCCeeEEEEEecCcc--------------------hHHHH-H
Q 039378 361 QMVMFSATWPIEVHKLAEEYMDP-NPVKVVVGSEDLAANHDVMQIVEVLDDRS--------------------RDQRL-L 418 (600)
Q Consensus 361 q~i~~SATl~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~l-~ 418 (600)
|+|+||||+++ ...+. .++.. .+..+...... ....+... ....... ....+ .
T Consensus 161 QrIgLSATI~n-~eevA-~~L~g~~pv~Iv~~~~~--r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVA-AFLGGDRPVTVVNPPAM--RHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred eEEEEEeeCCC-HHHHH-HHhcCCCCEEEECCCCC--cccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 99999999987 34554 44433 35544322211 11112211 1111100 00011 1
Q ss_pred HHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCC---------------------------------CeEEEEcCCCCH
Q 039378 419 ALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSG---------------------------------WKVVAIHGKKAQ 465 (600)
Q Consensus 419 ~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~l~~~~~~ 465 (600)
.++..+. ...++||||||+..++.++..|++.. +.+..+||+|++
T Consensus 236 ~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSk 313 (1490)
T PRK09751 236 GILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSK 313 (1490)
T ss_pred HHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCH
Confidence 2333222 25789999999999999999987531 125789999999
Q ss_pred HHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCC-CCccEEE
Q 039378 466 HERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRA-GKKGVSH 530 (600)
Q Consensus 466 ~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~-g~~g~~~ 530 (600)
.+|..+++.|++|.+++||||+.+++||||+++++||+|+.|.++.+|+||+||+||. |..+.++
T Consensus 314 eeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 314 EQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 9999999999999999999999999999999999999999999999999999999996 3334444
No 56
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.3e-40 Score=359.84 Aligned_cols=307 Identities=20% Similarity=0.225 Sum_probs=232.6
Q ss_pred HHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH-hcCCCCce
Q 039378 206 SHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND-AGKPCGVK 284 (600)
Q Consensus 206 ~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~-~~~~~~~~ 284 (600)
.+.+..+.+++++|++|+||||||++|.++++.... .+++++|+.|||++|.|+.+.+.. ++...+..
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~ 76 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQT 76 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE
Confidence 345566667889999999999999999999887642 134689999999999999999864 44455555
Q ss_pred EEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccc-hhhcCCChH-HHHHHHHhcCcCCcE
Q 039378 285 SVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEAD-RMLDMGFEE-PVRFILSKISLARQM 362 (600)
Q Consensus 285 ~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah-~l~~~~~~~-~~~~il~~~~~~~q~ 362 (600)
+...+++... ...+.+|+|+|||+|.+++..+ ..++++++|||||+| ++++.++.. .+..+...++...|+
T Consensus 77 VGy~vr~~~~------~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlql 149 (819)
T TIGR01970 77 VGYRVRGENK------VSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKI 149 (819)
T ss_pred EEEEEccccc------cCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceE
Confidence 6655555432 2334799999999999988764 468999999999999 577765543 234556667778899
Q ss_pred EEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchH-HHHHHHHHHHhhcCCCeEEEEEeehhc
Q 039378 363 VMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD-QRLLALLEKYHKSQRNRVLVFALYQLE 441 (600)
Q Consensus 363 i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~lVF~~s~~~ 441 (600)
|+||||++... ...++. ++..+...... ..+.+++.......+. ..+...+..+.....+.+||||+++.+
T Consensus 150 IlmSATl~~~~---l~~~l~-~~~vI~~~gr~----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~e 221 (819)
T TIGR01970 150 LAMSATLDGER---LSSLLP-DAPVVESEGRS----FPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAE 221 (819)
T ss_pred EEEeCCCCHHH---HHHHcC-CCcEEEecCcc----eeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence 99999999653 356663 33344433322 1233333333222221 122233333333346789999999999
Q ss_pred HHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCC----------
Q 039378 442 ADRLENMLRR---SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPL---------- 508 (600)
Q Consensus 442 ~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~---------- 508 (600)
++.++..|.. .++.+..+||+|++.+|..+++.|++|..+|||||+++++|||||+|++||++++|.
T Consensus 222 I~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~ 301 (819)
T TIGR01970 222 IRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGI 301 (819)
T ss_pred HHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCC
Confidence 9999999987 478999999999999999999999999999999999999999999999999999874
Q ss_pred --------ChhhHHHHhhhccCCCCccEEEEEEcCCcHh
Q 039378 509 --------TTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539 (600)
Q Consensus 509 --------s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~ 539 (600)
|.++|.||+|||||. ++|.||.||+..+..
T Consensus 302 ~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 302 TRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred ceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 234589999999999 699999999987654
No 57
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=2e-40 Score=318.10 Aligned_cols=281 Identities=32% Similarity=0.541 Sum_probs=221.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCC---CCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceE
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKP---CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVS 330 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~ 330 (600)
.|.++|+-|.|+|+.|.++.+.++... ..++..++.||...+.+...+..+.+|+|+||+||.+.+..+.+.+.+++
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 467999999999999999977665443 34677789999999999999999999999999999999999999999999
Q ss_pred EEEEcccchhhcCCChHHHHHHHHhcCc------CCcEEEEeccCCh-hHHHHHHHhcCCCCeEEEECCcccccCCCeeE
Q 039378 331 FVVLDEADRMLDMGFEEPVRFILSKISL------ARQMVMFSATWPI-EVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQ 403 (600)
Q Consensus 331 ~lViDEah~l~~~~~~~~~~~il~~~~~------~~q~i~~SATl~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (600)
++|+||||.++.+++.+.+..+...++. ..|.++.|||+.. ++..+.++.| ..|..+.....+.. ...+.+
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervm-hfptwVdLkgeD~v-petvHh 443 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVM-HFPTWVDLKGEDLV-PETVHH 443 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhc-cCceeEeccccccc-chhhcc
Confidence 9999999999999998888887777653 2489999999853 3334444444 45555544433321 111111
Q ss_pred EEEEec------------------------------CcchHHHHHHHH------HHHhhcCCCeEEEEEeehhcHHHHHH
Q 039378 404 IVEVLD------------------------------DRSRDQRLLALL------EKYHKSQRNRVLVFALYQLEADRLEN 447 (600)
Q Consensus 404 ~~~~~~------------------------------~~~~~~~l~~~l------~~~~~~~~~~~lVF~~s~~~~~~l~~ 447 (600)
...... +.........++ ..+......+.||||.++.+++.|.+
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 111110 111111111121 11222335789999999999999999
Q ss_pred HHHhCC---CeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCC
Q 039378 448 MLRRSG---WKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAG 524 (600)
Q Consensus 448 ~L~~~~---~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g 524 (600)
+|.+.| +.+.++||+..+.+|...++.|..+..++|||||+++|||||.++-++||.-+|.....|+||+||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 998874 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEcCC
Q 039378 525 KKGVSHTFFTNH 536 (600)
Q Consensus 525 ~~g~~~~~~~~~ 536 (600)
+-|.++.++...
T Consensus 604 rmglaislvat~ 615 (725)
T KOG0349|consen 604 RMGLAISLVATV 615 (725)
T ss_pred hcceeEEEeecc
Confidence 999999988643
No 58
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.8e-39 Score=340.20 Aligned_cols=319 Identities=21% Similarity=0.222 Sum_probs=243.5
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+|+|..+++.++.|+ |+.+.||+|||++|.+|++...+. ++.++||+||++||.|.++.+..+..
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-----------G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-----------GLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-----------CCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 79999999999999999 999999999999999999987654 34589999999999999999999999
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHH-HHHHHccC-------------------------CCccceEEEE
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL-IDLIEMNV-------------------------CHLSEVSFVV 333 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~-------------------------~~l~~~~~lV 333 (600)
.+++++.+++||... +.+....+++|+++|...| .++++.+. .....+.+.|
T Consensus 170 ~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aI 247 (656)
T PRK12898 170 ALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAI 247 (656)
T ss_pred hcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeE
Confidence 999999999999764 3445556799999999877 44554321 1135688999
Q ss_pred Ecccchhhc---------------C---CChHHHHHHHHhcCc-------------------------------------
Q 039378 334 LDEADRMLD---------------M---GFEEPVRFILSKISL------------------------------------- 358 (600)
Q Consensus 334 iDEah~l~~---------------~---~~~~~~~~il~~~~~------------------------------------- 358 (600)
|||+|.++- . ........+...+..
T Consensus 248 vDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~ 327 (656)
T PRK12898 248 VDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGA 327 (656)
T ss_pred eecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccc
Confidence 999997641 0 000000000000000
Q ss_pred -------------------C------------------------------------------------------------
Q 039378 359 -------------------A------------------------------------------------------------ 359 (600)
Q Consensus 359 -------------------~------------------------------------------------------------ 359 (600)
+
T Consensus 328 ~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~ 407 (656)
T PRK12898 328 VRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRR 407 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHh
Confidence 0
Q ss_pred -CcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEee
Q 039378 360 -RQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALY 438 (600)
Q Consensus 360 -~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s 438 (600)
.++.+||||.+.....+...|. .+++.+...... .....+.+..+....+...+...+..... .+.++||||+|
T Consensus 408 Y~kl~GmTGTa~~~~~El~~~y~-l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL~~~i~~~~~-~~~pvLIft~t 482 (656)
T PRK12898 408 YLRLAGMTGTAREVAGELWSVYG-LPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAVAARVRELHA-QGRPVLVGTRS 482 (656)
T ss_pred hHHHhcccCcChHHHHHHHHHHC-CCeEEeCCCCCc---cceecCCEEEeCHHHHHHHHHHHHHHHHh-cCCCEEEEeCc
Confidence 2578999999987777766665 455444332222 11122334445566677778777776543 34689999999
Q ss_pred hhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCC---CcC-----EEEEcCCCCCh
Q 039378 439 QLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP---DVE-----VVINYSFPLTT 510 (600)
Q Consensus 439 ~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~---~v~-----~VI~~d~p~s~ 510 (600)
+..++.++..|...|+++..|||.+. +|+..+..|..+...|+|||++++||+||+ +|. |||+|++|.+.
T Consensus 483 ~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~ 560 (656)
T PRK12898 483 VAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSA 560 (656)
T ss_pred HHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCH
Confidence 99999999999999999999999865 555556666666667999999999999999 676 99999999999
Q ss_pred hhHHHHhhhccCCCCccEEEEEEcCCcHhH
Q 039378 511 EDYVHRIGRTGRAGKKGVSHTFFTNHNKAL 540 (600)
Q Consensus 511 ~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~ 540 (600)
..|.||+|||||.|.+|.+++|++.+|.-+
T Consensus 561 r~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 561 RIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred HHHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 999999999999999999999999877544
No 59
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.9e-39 Score=355.08 Aligned_cols=307 Identities=19% Similarity=0.241 Sum_probs=231.5
Q ss_pred HHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH-hcCCCCce
Q 039378 206 SHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND-AGKPCGVK 284 (600)
Q Consensus 206 ~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~-~~~~~~~~ 284 (600)
.+.+..+.++++++++|+||||||++|.++++..... .++++|++|||++|.|+.+.+.. ++...+..
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----------CCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 3455666778899999999999999998887764211 23689999999999999999864 45556677
Q ss_pred EEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccch-hhcCCCh-HHHHHHHHhcCcCCcE
Q 039378 285 SVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADR-MLDMGFE-EPVRFILSKISLARQM 362 (600)
Q Consensus 285 ~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~-l~~~~~~-~~~~~il~~~~~~~q~ 362 (600)
+...+++..... ....|+|+|||+|.+++..+ ..++++++|||||+|. .++.++. ..+..++..++...|+
T Consensus 80 VGy~vr~~~~~~------~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lql 152 (812)
T PRK11664 80 VGYRMRAESKVG------PNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKL 152 (812)
T ss_pred EEEEecCccccC------CCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceE
Confidence 777777654322 23689999999999988764 4689999999999997 3443322 2334556667778899
Q ss_pred EEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHH-HHHHHHHHHhhcCCCeEEEEEeehhc
Q 039378 363 VMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ-RLLALLEKYHKSQRNRVLVFALYQLE 441 (600)
Q Consensus 363 i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~lVF~~s~~~ 441 (600)
++||||++... ...++. ++..+.+.... ..+.+++.......+.. .+...+..+.....+.+||||++..+
T Consensus 153 ilmSATl~~~~---l~~~~~-~~~~I~~~gr~----~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~e 224 (812)
T PRK11664 153 LIMSATLDNDR---LQQLLP-DAPVIVSEGRS----FPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGE 224 (812)
T ss_pred EEEecCCCHHH---HHHhcC-CCCEEEecCcc----ccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHH
Confidence 99999998642 345663 33344433221 12334433333222222 22233333333446899999999999
Q ss_pred HHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCC----------
Q 039378 442 ADRLENMLRR---SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPL---------- 508 (600)
Q Consensus 442 ~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~---------- 508 (600)
+..++..|.. .++.+..+||+|++.+|..++..|.+|..+|||||+++++||||++|++||+++++.
T Consensus 225 i~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~ 304 (812)
T PRK11664 225 IQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGL 304 (812)
T ss_pred HHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCc
Confidence 9999999987 578899999999999999999999999999999999999999999999999988764
Q ss_pred --------ChhhHHHHhhhccCCCCccEEEEEEcCCcHh
Q 039378 509 --------TTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539 (600)
Q Consensus 509 --------s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~ 539 (600)
|.++|.||+|||||. ++|.||.||+..+..
T Consensus 305 ~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 305 TRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred ceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 335799999999999 599999999987543
No 60
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.9e-38 Score=310.33 Aligned_cols=330 Identities=22% Similarity=0.248 Sum_probs=239.6
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
+.-+++.||.......+.+ |.+++.|||.|||+++++-+..++...+ + ++|+++||+-|+.|..+.|.+
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~---------~-kvlfLAPTKPLV~Qh~~~~~~ 80 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG---------G-KVLFLAPTKPLVLQHAEFCRK 80 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC---------C-eEEEecCCchHHHHHHHHHHH
Confidence 3447788899888887776 8999999999999987776666655442 2 489999999999999999999
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhc
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~ 356 (600)
......-.++.+.|............ ...|+|+||..+.+-+..+.+++.++.+|||||||+.....-...+..-.-..
T Consensus 81 v~~ip~~~i~~ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~ 159 (542)
T COG1111 81 VTGIPEDEIAALTGEVRPEEREELWA-KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS 159 (542)
T ss_pred HhCCChhheeeecCCCChHHHHHHHh-hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHh
Confidence 88766666778888877665544444 37999999999999999999999999999999999987542222233323334
Q ss_pred CcCCcEEEEeccCChhHHHHHHH--hcCCCCeEEEECCc-ccccC---CCeeE---------------------------
Q 039378 357 SLARQMVMFSATWPIEVHKLAEE--YMDPNPVKVVVGSE-DLAAN---HDVMQ--------------------------- 403 (600)
Q Consensus 357 ~~~~q~i~~SATl~~~~~~~~~~--~~~~~~~~i~~~~~-~~~~~---~~~~~--------------------------- 403 (600)
..++.++++|||+-.+...+..- .++...+.+..... +...+ ..+..
T Consensus 160 ~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L 239 (542)
T COG1111 160 AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPL 239 (542)
T ss_pred ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55667999999975433322110 01011111100000 00000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 039378 404 -------------------------------------------------------------------------------- 403 (600)
Q Consensus 404 -------------------------------------------------------------------------------- 403 (600)
T Consensus 240 ~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk 319 (542)
T COG1111 240 KELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSK 319 (542)
T ss_pred HHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchH
Confidence
Q ss_pred --------------------EEEEecCcchHHHHHHHHHHHh-hcCCCeEEEEEeehhcHHHHHHHHHhCCCeEE-EEc-
Q 039378 404 --------------------IVEVLDDRSRDQRLLALLEKYH-KSQRNRVLVFALYQLEADRLENMLRRSGWKVV-AIH- 460 (600)
Q Consensus 404 --------------------~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~-~l~- 460 (600)
.........+...+..++.... +....++|||++.+.+++.+..+|...+..+. .+-
T Consensus 320 ~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiG 399 (542)
T COG1111 320 AAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIG 399 (542)
T ss_pred HHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEee
Confidence 0000001233344444444333 23457999999999999999999999887764 333
Q ss_pred -------CCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEE
Q 039378 461 -------GKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFF 533 (600)
Q Consensus 461 -------~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~ 533 (600)
.||+|.++.+++++|+.|.+.|||||++++.|||||.++.||+|++-.|+.-++||.|||||. +.|.+++|+
T Consensus 400 Qa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLv 478 (542)
T COG1111 400 QASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLV 478 (542)
T ss_pred ccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999998 799999999
Q ss_pred cCCcHh
Q 039378 534 TNHNKA 539 (600)
Q Consensus 534 ~~~d~~ 539 (600)
+.+...
T Consensus 479 t~gtrd 484 (542)
T COG1111 479 TEGTRD 484 (542)
T ss_pred ecCchH
Confidence 998443
No 61
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.1e-38 Score=337.52 Aligned_cols=309 Identities=18% Similarity=0.166 Sum_probs=223.3
Q ss_pred CCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 198 ~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
...|+++|.++++.++.++++++++|||+|||+++.. +...+.... ..++|||+||++|+.||.+.+.++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~~---------~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLENY---------EGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhcC---------CCeEEEEECcHHHHHHHHHHHHHh
Confidence 3589999999999999999999999999999997543 222222221 225899999999999999999998
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcC
Q 039378 278 GKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357 (600)
Q Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~ 357 (600)
+......+..+.+|.... ...+|+|+||++|.+... ..+.++++||+||||++... .+..++..++
T Consensus 182 ~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~ 247 (501)
T PHA02558 182 RLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLD 247 (501)
T ss_pred ccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhh
Confidence 754444455666665432 237999999999876432 24678999999999998753 4567777777
Q ss_pred cCCcEEEEeccCChhHHHHH--HHhcCCCCeEEEECCccccc-----CCCeeEEE---------------------EEec
Q 039378 358 LARQMVMFSATWPIEVHKLA--EEYMDPNPVKVVVGSEDLAA-----NHDVMQIV---------------------EVLD 409 (600)
Q Consensus 358 ~~~q~i~~SATl~~~~~~~~--~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~---------------------~~~~ 409 (600)
..+++++||||++....... ..++ .++...+....... ...+.... ....
T Consensus 248 ~~~~~lGLTATp~~~~~~~~~~~~~f--G~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~ 325 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKANILQYVGLF--GDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITS 325 (501)
T ss_pred ccceEEEEeccCCCccccHHHHHHhh--CCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhc
Confidence 77899999999865322111 1122 12221111110000 00000000 0011
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEec-cc
Q 039378 410 DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT-DV 488 (600)
Q Consensus 410 ~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT-~~ 488 (600)
...+...+..++..+. ..+.++||||.+.++++.|+..|...++++..+||+|++.+|..+++.|+.|...||||| ++
T Consensus 326 ~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~ 404 (501)
T PHA02558 326 HTKRNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGV 404 (501)
T ss_pred cHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcce
Confidence 1122233333443333 245789999999999999999999999999999999999999999999999999999998 89
Q ss_pred cccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEE
Q 039378 489 AARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFF 533 (600)
Q Consensus 489 ~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~ 533 (600)
+++|+|+|++++||++.++.+...|+||+||++|.+..+...++|
T Consensus 405 l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 405 FSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred eccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 999999999999999999999999999999999987654333333
No 62
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.1e-38 Score=369.08 Aligned_cols=320 Identities=21% Similarity=0.275 Sum_probs=241.0
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
|| .|+++|+++++.+++|+|++++||||+|||++++++++.... .++++|||+||++|+.|+++.+..
T Consensus 77 G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-----------~g~~aLVl~PTreLa~Qi~~~l~~ 144 (1638)
T PRK14701 77 GF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-----------KGKKCYIILPTTLLVKQTVEKIES 144 (1638)
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-----------cCCeEEEEECHHHHHHHHHHHHHH
Confidence 88 699999999999999999999999999999976665554321 145689999999999999999999
Q ss_pred hcCCC--CceEEEEeCCCChHHHH---HHHhc-CCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhc--------
Q 039378 277 AGKPC--GVKSVCVYGGTSKQPQI---TALRS-GVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLD-------- 342 (600)
Q Consensus 277 ~~~~~--~~~~~~~~~g~~~~~~~---~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~-------- 342 (600)
++... ++.+..++|+.+...+. ..+.. .++|+|+||++|.+.+... ...++++|||||||+|++
T Consensus 145 l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~knid~~ 222 (1638)
T PRK14701 145 FCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKASKNIDRS 222 (1638)
T ss_pred HHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccccccccchh
Confidence 88765 45667788888766553 33444 4899999999998876532 126799999999999987
Q ss_pred ---CCChHHHHH----HHH----------------------hcCcCCc-EEEEeccCChhHHHHHHHhcCCCCeEEEECC
Q 039378 343 ---MGFEEPVRF----ILS----------------------KISLARQ-MVMFSATWPIEVHKLAEEYMDPNPVKVVVGS 392 (600)
Q Consensus 343 ---~~~~~~~~~----il~----------------------~~~~~~q-~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~ 392 (600)
.||...+.. ++. .++..+| ++++|||+++... .. .++ ..+..+.++.
T Consensus 223 L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~~-~l~-~~~l~f~v~~ 299 (1638)
T PRK14701 223 LQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD-RV-KLY-RELLGFEVGS 299 (1638)
T ss_pred hhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH-HH-HHh-hcCeEEEecC
Confidence 367666653 322 2234455 6779999986411 11 233 4555666665
Q ss_pred cccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhc---HHHHHHHHHhCCCeEEEEcCCCCHHHHH
Q 039378 393 EDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLE---ADRLENMLRRSGWKVVAIHGKKAQHERT 469 (600)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~---~~~l~~~L~~~~~~~~~l~~~~~~~~r~ 469 (600)
... ...++.+.+.......+ ..+..++... +.++||||++... ++.++..|...|+++..+||+ |.
T Consensus 300 ~~~-~lr~i~~~yi~~~~~~k-~~L~~ll~~~----g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~ 368 (1638)
T PRK14701 300 GRS-ALRNIVDVYLNPEKIIK-EHVRELLKKL----GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NK 368 (1638)
T ss_pred CCC-CCCCcEEEEEECCHHHH-HHHHHHHHhC----CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HH
Confidence 432 33445555544433333 4555555543 4679999999886 489999999999999999995 88
Q ss_pred HHHHHHhcCCCCEEEec----cccccCCCCCC-cCEEEEcCCCC---ChhhHHHHh-------------hhccCCCCccE
Q 039378 470 KSLSLFKEGTCPLMVAT----DVAARGLDIPD-VEVVINYSFPL---TTEDYVHRI-------------GRTGRAGKKGV 528 (600)
Q Consensus 470 ~~~~~F~~g~~~vLvaT----~~~~~Gldi~~-v~~VI~~d~p~---s~~~y~qr~-------------GR~gR~g~~g~ 528 (600)
.+++.|++|+++||||| ++++||||+|+ |++|||||+|. +...|.|.. ||+||.|..+.
T Consensus 369 ~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 369 KGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred HHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcch
Confidence 99999999999999999 58999999999 99999999999 888777665 99999998888
Q ss_pred EEEEEcCCcHhHHHHH
Q 039378 529 SHTFFTNHNKALAGEL 544 (600)
Q Consensus 529 ~~~~~~~~d~~~~~~i 544 (600)
++..+...+...++.+
T Consensus 449 ~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 449 GVLDVFPEDVEFLRSI 464 (1638)
T ss_pred hHHHhHHHHHHHHHHH
Confidence 8755555554444433
No 63
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.4e-38 Score=339.98 Aligned_cols=322 Identities=19% Similarity=0.224 Sum_probs=240.5
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
|+ .|+++|..+++.++.|+ |+.+.||+|||++|++|++...+.. +.|+|++||++||.|.++.+..
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G-----------~~v~VvTpt~~LA~qd~e~~~~ 141 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEG-----------KGVHLITVNDYLAKRDAEEMGQ 141 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcC-----------CCeEEEeCCHHHHHHHHHHHHH
Confidence 44 89999999999998887 9999999999999999998776653 3489999999999999999999
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHH-HHHHHccC------CCccceEEEEEcccchhhcC------
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL-IDLIEMNV------CHLSEVSFVVLDEADRMLDM------ 343 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~------~~l~~~~~lViDEah~l~~~------ 343 (600)
+...+|+++.++.|+.+...+.+. ..+++|+++||++| .+++..+. ..+..+.++||||||.|+=.
T Consensus 142 l~~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpl 220 (790)
T PRK09200 142 VYEFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPL 220 (790)
T ss_pred HHhhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCce
Confidence 999999999999999884333333 34599999999999 55554332 35678999999999987510
Q ss_pred ---C-------ChHHHHHHHHhcCcC------------------------------------------------------
Q 039378 344 ---G-------FEEPVRFILSKISLA------------------------------------------------------ 359 (600)
Q Consensus 344 ---~-------~~~~~~~il~~~~~~------------------------------------------------------ 359 (600)
| ....+..+...+...
T Consensus 221 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~ 300 (790)
T PRK09200 221 IISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFK 300 (790)
T ss_pred eeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhh
Confidence 0 001111111111000
Q ss_pred ---------------------------------------------------------------CcEEEEeccCChhHHHH
Q 039378 360 ---------------------------------------------------------------RQMVMFSATWPIEVHKL 376 (600)
Q Consensus 360 ---------------------------------------------------------------~q~i~~SATl~~~~~~~ 376 (600)
..+.+||+|....-.++
T Consensus 301 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~ 380 (790)
T PRK09200 301 RDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF 380 (790)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH
Confidence 24567777765444444
Q ss_pred HHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeE
Q 039378 377 AEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKV 456 (600)
Q Consensus 377 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~ 456 (600)
...|- -.++.+.+........... ........+...+...+..... .+.++||||+|+..++.++..|...|+++
T Consensus 381 ~~~Y~---l~v~~IPt~kp~~r~d~~~-~i~~~~~~K~~al~~~i~~~~~-~~~pvLIf~~t~~~se~l~~~L~~~gi~~ 455 (790)
T PRK09200 381 FEVYN---MEVVQIPTNRPIIRIDYPD-KVFVTLDEKYKAVIEEVKERHE-TGRPVLIGTGSIEQSETFSKLLDEAGIPH 455 (790)
T ss_pred HHHhC---CcEEECCCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHCCCCE
Confidence 33221 1222233222111111111 2223445566667676655432 46799999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCC---CCcC-----EEEEcCCCCChhhHHHHhhhccCCCCccE
Q 039378 457 VAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI---PDVE-----VVINYSFPLTTEDYVHRIGRTGRAGKKGV 528 (600)
Q Consensus 457 ~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi---~~v~-----~VI~~d~p~s~~~y~qr~GR~gR~g~~g~ 528 (600)
..+||.+.+.++..+...+..| .|+|||++++||+|| ++|. |||+|++|.+...|.||+|||||.|.+|.
T Consensus 456 ~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~ 533 (790)
T PRK09200 456 NLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGS 533 (790)
T ss_pred EEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCee
Confidence 9999999998888888887766 699999999999999 6998 99999999999999999999999999999
Q ss_pred EEEEEcCCcHhH
Q 039378 529 SHTFFTNHNKAL 540 (600)
Q Consensus 529 ~~~~~~~~d~~~ 540 (600)
+++|++.+|.-+
T Consensus 534 s~~~is~eD~l~ 545 (790)
T PRK09200 534 SQFFISLEDDLL 545 (790)
T ss_pred EEEEEcchHHHH
Confidence 999999877644
No 64
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.5e-37 Score=353.50 Aligned_cols=281 Identities=23% Similarity=0.364 Sum_probs=211.6
Q ss_pred CCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 198 ~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
...|+++|+.+++.++.|+|++++||||+|||+ |.+|++..+... ++++|||+|||+||.|+++.+..+
T Consensus 76 g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~----------g~~vLIL~PTreLa~Qi~~~l~~l 144 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK----------GKRCYIILPTTLLVIQVAEKISSL 144 (1171)
T ss_pred CCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc----------CCeEEEEeCHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999997 667766655332 467999999999999999999999
Q ss_pred cCCCCceEE---EEeCCCChHHH---HHHHhc-CCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhc--------
Q 039378 278 GKPCGVKSV---CVYGGTSKQPQ---ITALRS-GVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLD-------- 342 (600)
Q Consensus 278 ~~~~~~~~~---~~~~g~~~~~~---~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~-------- 342 (600)
+...++.+. .++||.+...+ ...+.. +++|+|+||++|.+.+..- .. +++++|+||||+|++
T Consensus 145 ~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~~L~~~k~vd~i 221 (1171)
T TIGR01054 145 AEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDALLKASKNVDKL 221 (1171)
T ss_pred HHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHhhhhccccHHHH
Confidence 877666543 35677766543 233443 4999999999998877642 12 899999999999998
Q ss_pred ---CCChHH-HHHHH----------------------HhcCcCCc--EEEEecc-CChhHHHHHHHhcCCCCeEEEECCc
Q 039378 343 ---MGFEEP-VRFIL----------------------SKISLARQ--MVMFSAT-WPIEVHKLAEEYMDPNPVKVVVGSE 393 (600)
Q Consensus 343 ---~~~~~~-~~~il----------------------~~~~~~~q--~i~~SAT-l~~~~~~~~~~~~~~~~~~i~~~~~ 393 (600)
+||... +..++ ..++..+| ++++||| +|..+.. .++ .....+.++..
T Consensus 222 l~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~-r~ll~~~v~~~ 297 (1171)
T TIGR01054 222 LKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLF-RELLGFEVGGG 297 (1171)
T ss_pred HHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHc-ccccceEecCc
Confidence 577653 44433 23344455 5779999 5654432 222 34444555543
Q ss_pred ccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeeh---hcHHHHHHHHHhCCCeEEEEcCCCCHHHHHH
Q 039378 394 DLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQ---LEADRLENMLRRSGWKVVAIHGKKAQHERTK 470 (600)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~---~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~ 470 (600)
.. ...++.+.+..... +...+..++..+ +.++||||++. +.++.|+..|...|+++..+||+++ +.
T Consensus 298 ~~-~~r~I~~~~~~~~~--~~~~L~~ll~~l----~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~ 366 (1171)
T TIGR01054 298 SD-TLRNVVDVYVEDED--LKETLLEIVKKL----GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KE 366 (1171)
T ss_pred cc-cccceEEEEEeccc--HHHHHHHHHHHc----CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HH
Confidence 32 23345554443322 234555665543 46799999999 9999999999999999999999997 37
Q ss_pred HHHHHhcCCCCEEEe----ccccccCCCCCC-cCEEEEcCCC
Q 039378 471 SLSLFKEGTCPLMVA----TDVAARGLDIPD-VEVVINYSFP 507 (600)
Q Consensus 471 ~~~~F~~g~~~vLva----T~~~~~Gldi~~-v~~VI~~d~p 507 (600)
+++.|++|+++|||| |++++||||+|+ |++|||||+|
T Consensus 367 ~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 367 DYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 899999999999999 599999999999 8999998877
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=6.9e-38 Score=322.82 Aligned_cols=300 Identities=18% Similarity=0.160 Sum_probs=206.2
Q ss_pred cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChH-
Q 039378 217 DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQ- 295 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~- 295 (600)
+++++||||||||++|++|++..+.... +.+++|++|+++|+.|+++.+..+... .+..++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~---------~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~ 68 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQK---------ADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKR 68 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCC---------CCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHH
Confidence 5899999999999999999987754322 346899999999999999999997432 223333332210
Q ss_pred -----------HHHHHH------hcCCcEEEEchHHHHHHHHccC----CCc--cceEEEEEcccchhhcCCChHHHHHH
Q 039378 296 -----------PQITAL------RSGVDIVIGTPGRLIDLIEMNV----CHL--SEVSFVVLDEADRMLDMGFEEPVRFI 352 (600)
Q Consensus 296 -----------~~~~~l------~~~~~Iiv~Tp~~l~~~l~~~~----~~l--~~~~~lViDEah~l~~~~~~~~~~~i 352 (600)
...... ....+|+|+||+++...+.... ..+ -..++|||||+|.+.+.++.. +..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~ 147 (358)
T TIGR01587 69 IKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAV 147 (358)
T ss_pred HhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHH
Confidence 000000 1136899999999988765421 111 123799999999998764433 5555
Q ss_pred HHhcC-cCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEE-e-cCcchHHHHHHHHHHHhhcCC
Q 039378 353 LSKIS-LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEV-L-DDRSRDQRLLALLEKYHKSQR 429 (600)
Q Consensus 353 l~~~~-~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~l~~~~~~~~ 429 (600)
+..+. ...|+++||||+|..+..+...+.. .+........... ....+.+.. . ....+...+..++.... .+
T Consensus 148 l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~ 222 (358)
T TIGR01587 148 LEVLKDNDVPILLMSATLPKFLKEYAEKIGY-VEFNEPLDLKEER--RFERHRFIKIESDKVGEISSLERLLEFIK--KG 222 (358)
T ss_pred HHHHHHcCCCEEEEecCchHHHHHHHhcCCC-cccccCCCCcccc--ccccccceeeccccccCHHHHHHHHHHhh--CC
Confidence 55443 4689999999999777666554431 1111111100000 000111111 1 11233444445554332 36
Q ss_pred CeEEEEEeehhcHHHHHHHHHhCCC--eEEEEcCCCCHHHHHHH----HHHHhcCCCCEEEeccccccCCCCCCcCEEEE
Q 039378 430 NRVLVFALYQLEADRLENMLRRSGW--KVVAIHGKKAQHERTKS----LSLFKEGTCPLMVATDVAARGLDIPDVEVVIN 503 (600)
Q Consensus 430 ~~~lVF~~s~~~~~~l~~~L~~~~~--~~~~l~~~~~~~~r~~~----~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~ 503 (600)
+++||||++++.+..++..|...+. .+..+||++++.+|.+. ++.|++|..+|||||+++++||||+ +++||+
T Consensus 223 ~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~ 301 (358)
T TIGR01587 223 GKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT 301 (358)
T ss_pred CeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE
Confidence 7999999999999999999988765 59999999999999764 8899999999999999999999995 899999
Q ss_pred cCCCCChhhHHHHhhhccCCCCc----cEEEEEEcCCc
Q 039378 504 YSFPLTTEDYVHRIGRTGRAGKK----GVSHTFFTNHN 537 (600)
Q Consensus 504 ~d~p~s~~~y~qr~GR~gR~g~~----g~~~~~~~~~d 537 (600)
+..| +..|+||+||+||.|+. |.+++|....+
T Consensus 302 ~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 302 ELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred cCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 8877 67999999999998864 36677766544
No 66
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=4.6e-37 Score=327.96 Aligned_cols=330 Identities=19% Similarity=0.199 Sum_probs=235.4
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+++|..++..+..| .|+.++||+|||++|++|++...+..+ .++||+|+++||.|+.+++..+..
T Consensus 70 rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~g~-----------~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALTGK-----------GAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhcCC-----------ceEEeCCCHHHHHHHHHHHHHHHh
Confidence 5666666666666555 699999999999999999877766432 389999999999999999999999
Q ss_pred CCCceEEEEeCCCC---hHHHHHHHhcCCcEEEEchHHH-HHHHHcc------CCCccceEEEEEcccchhhcCC-----
Q 039378 280 PCGVKSVCVYGGTS---KQPQITALRSGVDIVIGTPGRL-IDLIEMN------VCHLSEVSFVVLDEADRMLDMG----- 344 (600)
Q Consensus 280 ~~~~~~~~~~~g~~---~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~~~~lViDEah~l~~~~----- 344 (600)
.+|+.+.+.+++.. ..........+++|+++||++| .+++... ...+..+.++|+||||.|+-..
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 99999988877632 2223334445799999999999 5555322 3447789999999999985210
Q ss_pred -----------ChHHHHHHHHhcCcC------------------------------------------------------
Q 039378 345 -----------FEEPVRFILSKISLA------------------------------------------------------ 359 (600)
Q Consensus 345 -----------~~~~~~~il~~~~~~------------------------------------------------------ 359 (600)
....+..+...+...
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 000111111111100
Q ss_pred ---------------------------------------------------------------CcEEEEeccCChhHHHH
Q 039378 360 ---------------------------------------------------------------RQMVMFSATWPIEVHKL 376 (600)
Q Consensus 360 ---------------------------------------------------------------~q~i~~SATl~~~~~~~ 376 (600)
..+.+||+|......++
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef 376 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEF 376 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHH
Confidence 24567777765544444
Q ss_pred HHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeE
Q 039378 377 AEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKV 456 (600)
Q Consensus 377 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~ 456 (600)
...|- -.++.+.+.......... -..+.....+...+...+..... .+.++||||+++..++.++..|...|+++
T Consensus 377 ~~iY~---l~v~~IPt~kp~~r~d~~-d~i~~~~~~K~~ai~~~i~~~~~-~~~pvLIft~s~~~se~ls~~L~~~gi~~ 451 (762)
T TIGR03714 377 IETYS---LSVVKIPTNKPIIRIDYP-DKIYATLPEKLMATLEDVKEYHE-TGQPVLLITGSVEMSEIYSELLLREGIPH 451 (762)
T ss_pred HHHhC---CCEEEcCCCCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHhh-CCCCEEEEECcHHHHHHHHHHHHHCCCCE
Confidence 43221 122222222111111111 12233445566777776665533 46799999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCC---------CcCEEEEcCCCCChhhHHHHhhhccCCCCcc
Q 039378 457 VAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP---------DVEVVINYSFPLTTEDYVHRIGRTGRAGKKG 527 (600)
Q Consensus 457 ~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~---------~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g 527 (600)
..+||.+.+.+|..+...|+.| .|+|||++++||+||+ ++.+|++|++|....+ .||+|||||.|.+|
T Consensus 452 ~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G 528 (762)
T TIGR03714 452 NLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPG 528 (762)
T ss_pred EEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCce
Confidence 9999999999988888777777 6999999999999999 9999999999987655 99999999999999
Q ss_pred EEEEEEcCCcHhHH----HHHHHHHHH
Q 039378 528 VSHTFFTNHNKALA----GELVNVLRE 550 (600)
Q Consensus 528 ~~~~~~~~~d~~~~----~~i~~~l~~ 550 (600)
.++.|++..|.-+. ..+..++..
T Consensus 529 ~s~~~is~eD~l~~~~~~~~~~~~~~~ 555 (762)
T TIGR03714 529 SSQFFVSLEDDLIKRWSPSWLKKYYKK 555 (762)
T ss_pred eEEEEEccchhhhhhcchHHHHHHHHH
Confidence 99999998876542 344445544
No 67
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.4e-36 Score=322.12 Aligned_cols=319 Identities=22% Similarity=0.256 Sum_probs=241.1
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+++|..+.+.++.|+ |+.++||+|||++|.+|++...+... .|+||+||++||.|.++.+..+..
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~-----------~V~VvTpt~~LA~qdae~~~~l~~ 122 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGK-----------GVHVVTVNDYLAQRDAEWMGQVYR 122 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCC-----------CEEEEcCCHHHHHHHHHHHHHHhc
Confidence 78999999999988876 99999999999999999976655432 289999999999999999999999
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHH-HHHHHcc------CCCccceEEEEEcccchhhcC---------
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL-IDLIEMN------VCHLSEVSFVVLDEADRMLDM--------- 343 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~~~~lViDEah~l~~~--------- 343 (600)
.+|+++.+++|+.+........ .++|+++||++| .++++.+ ...+..+.++||||+|+|+-.
T Consensus 123 ~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiis 200 (745)
T TIGR00963 123 FLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIIS 200 (745)
T ss_pred cCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhc
Confidence 9999999999998865544333 489999999999 8888765 245788999999999987530
Q ss_pred C----Ch---HHHHHHHHhcCcC---------------------------------------------------------
Q 039378 344 G----FE---EPVRFILSKISLA--------------------------------------------------------- 359 (600)
Q Consensus 344 ~----~~---~~~~~il~~~~~~--------------------------------------------------------- 359 (600)
| .. .....+...+...
T Consensus 201 g~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~ 280 (745)
T TIGR00963 201 GPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDV 280 (745)
T ss_pred CCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCC
Confidence 0 00 0000011100000
Q ss_pred ------------------------------------------------------------CcEEEEeccCChhHHHHHHH
Q 039378 360 ------------------------------------------------------------RQMVMFSATWPIEVHKLAEE 379 (600)
Q Consensus 360 ------------------------------------------------------------~q~i~~SATl~~~~~~~~~~ 379 (600)
..+.+||+|.......+...
T Consensus 281 dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i 360 (745)
T TIGR00963 281 DYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKI 360 (745)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHH
Confidence 24567777775554444333
Q ss_pred hcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEE
Q 039378 380 YMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAI 459 (600)
Q Consensus 380 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l 459 (600)
|- -. ++.+.+........... ..+.....+...+...+..... .+.++||||+++..++.++..|...|+++..+
T Consensus 361 Y~--l~-vv~IPtnkp~~R~d~~d-~i~~t~~~k~~ai~~~i~~~~~-~grpvLV~t~si~~se~ls~~L~~~gi~~~~L 435 (745)
T TIGR00963 361 YN--LE-VVVVPTNRPVIRKDLSD-LVYKTEEEKWKAVVDEIKERHA-KGQPVLVGTTSVEKSELLSNLLKERGIPHNVL 435 (745)
T ss_pred hC--CC-EEEeCCCCCeeeeeCCC-eEEcCHHHHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEe
Confidence 32 12 22222221111111111 1122233455566555544443 47899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCC-------cCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEE
Q 039378 460 HGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD-------VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTF 532 (600)
Q Consensus 460 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~-------v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~ 532 (600)
||. +.+|+..+..|..+...|+|||++++||+||+. .-|||++++|.|...|.||+||+||.|.+|.+..|
T Consensus 436 na~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 436 NAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred eCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 998 889999999999999999999999999999998 45999999999999999999999999999999999
Q ss_pred EcCCcHhH
Q 039378 533 FTNHNKAL 540 (600)
Q Consensus 533 ~~~~d~~~ 540 (600)
++.+|.-+
T Consensus 514 ls~eD~l~ 521 (745)
T TIGR00963 514 LSLEDNLM 521 (745)
T ss_pred EeccHHHH
Confidence 99998654
No 68
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.9e-37 Score=307.81 Aligned_cols=338 Identities=21% Similarity=0.276 Sum_probs=265.3
Q ss_pred cccccCCCCHHHHHhhc--CCCCCcHHHHHHhhh-hhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCce
Q 039378 180 KSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPF-LLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPL 256 (600)
Q Consensus 180 ~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~-il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~ 256 (600)
-...++.+|++....++ |+..+.|+|..++.. +++|.|.++..+|+||||++.-++-+..++.. +.+
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~----------g~K 263 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG----------GKK 263 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC----------CCe
Confidence 34678899999999887 899999999999977 78999999999999999999888888888775 334
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHH----HHHhcCCcEEEEchHHHHHHHHccCCCccceEEE
Q 039378 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQI----TALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFV 332 (600)
Q Consensus 257 ~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~l 332 (600)
.|+++|..+||.|-++.|.+....+++.+.+-+|........ ......+||||+||+.+-.+++.+ ..+.++..|
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtV 342 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTV 342 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceE
Confidence 799999999999999999998888888887777754433221 112234899999999998887766 579999999
Q ss_pred EEcccchhhcCCChHHHHHHHHh---cCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEe-
Q 039378 333 VLDEADRMLDMGFEEPVRFILSK---ISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVL- 408 (600)
Q Consensus 333 ViDEah~l~~~~~~~~~~~il~~---~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~- 408 (600)
||||+|.+-+...+..+.-++.+ +-+..|+|.+|||.-+. ..++..+- ...+.. .. .+..+..+..++
T Consensus 343 VIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~-a~lV~y--~~----RPVplErHlvf~~ 414 (830)
T COG1202 343 VIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLG-AKLVLY--DE----RPVPLERHLVFAR 414 (830)
T ss_pred EeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhC-CeeEee--cC----CCCChhHeeeeec
Confidence 99999999876666666665544 34578999999998654 44444332 333222 21 122333344444
Q ss_pred cCcchHHHHHHHHHHHh-----hcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEE
Q 039378 409 DDRSRDQRLLALLEKYH-----KSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLM 483 (600)
Q Consensus 409 ~~~~~~~~l~~~l~~~~-----~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vL 483 (600)
+...++..+..++..-. ....+++|||++|+..|+.|+..|...|+++.++|++|+..+|..+...|.++.+.++
T Consensus 415 ~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~V 494 (830)
T COG1202 415 NESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAV 494 (830)
T ss_pred CchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceE
Confidence 45666666666665422 2346899999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccCCCCCCcCEEEE---cC-CCCChhhHHHHhhhccCCCC--ccEEEEEEcCC
Q 039378 484 VATDVAARGLDIPDVEVVIN---YS-FPLTTEDYVHRIGRTGRAGK--KGVSHTFFTNH 536 (600)
Q Consensus 484 vaT~~~~~Gldi~~v~~VI~---~d-~p~s~~~y~qr~GR~gR~g~--~g~~~~~~~~~ 536 (600)
|+|.+++.|+|+|.-.+|+- ++ -+.++..|.||.|||||-+- .|.+++++.+.
T Consensus 495 VTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 495 VTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred eehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999999999997654431 23 35689999999999999774 59999998765
No 69
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=6.6e-37 Score=333.05 Aligned_cols=333 Identities=23% Similarity=0.282 Sum_probs=249.7
Q ss_pred CCHHHHHhhc--CCCCCcHHHHHHhhhhh-cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEccc
Q 039378 187 LPDDVLGCCK--NFKNPSPIQSHAWPFLL-NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPT 263 (600)
Q Consensus 187 l~~~l~~~~~--~~~~~~~~Q~~~i~~il-~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Pt 263 (600)
+++.+...+. ++.+++|-|+.++...+ .++|+++|+|||||||+++++.++..+.+. +.++++|||+
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----------~~k~vYivPl 85 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----------GGKVVYIVPL 85 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----------CCcEEEEeCh
Confidence 4555555554 66677888888876544 558999999999999999999988888775 2348999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcC
Q 039378 264 RELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM 343 (600)
Q Consensus 264 r~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~ 343 (600)
++||.+.++.|. ....+|+++...+|+...... ...+++|||+||++|..++++....+..+++|||||+|.+.+.
T Consensus 86 kALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~ 161 (766)
T COG1204 86 KALAEEKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDR 161 (766)
T ss_pred HHHHHHHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCc
Confidence 999999999999 344568999999998875542 1235899999999999888887777889999999999999887
Q ss_pred CChHHHHHHHHhcCcC---CcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcc------hH
Q 039378 344 GFEEPVRFILSKISLA---RQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRS------RD 414 (600)
Q Consensus 344 ~~~~~~~~il~~~~~~---~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~ 414 (600)
..++.++.++.+.... .|++++|||+|+... + ..+++.++......+............+....... ..
T Consensus 162 ~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~e-v-A~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~ 239 (766)
T COG1204 162 TRGPVLESIVARMRRLNELIRIVGLSATLPNAEE-V-ADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLID 239 (766)
T ss_pred ccCceehhHHHHHHhhCcceEEEEEeeecCCHHH-H-HHHhCCcccccCCCCcccccCCccceEEEEecCccccccccch
Confidence 6777788877766544 699999999997533 3 34554454432223322222222223333332222 23
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC-------------------------------------CCeEE
Q 039378 415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS-------------------------------------GWKVV 457 (600)
Q Consensus 415 ~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~ 457 (600)
...+.++..... .++++||||+|+..+...++.|... -..++
T Consensus 240 ~~~~~~v~~~~~-~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gva 318 (766)
T COG1204 240 NLALELVLESLA-EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVA 318 (766)
T ss_pred HHHHHHHHHHHh-cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcc
Confidence 334444443333 3789999999999999999888730 02378
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEE----EcC-----CCCChhhHHHHhhhccCCCC--c
Q 039378 458 AIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVI----NYS-----FPLTTEDYVHRIGRTGRAGK--K 526 (600)
Q Consensus 458 ~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI----~~d-----~p~s~~~y~qr~GR~gR~g~--~ 526 (600)
.+|++|+..+|.-+.+.|+.|.++||+||+++++|+|+|.-.+|| .|+ .+.++.+|+|++|||||-|- .
T Consensus 319 fHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~ 398 (766)
T COG1204 319 FHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDY 398 (766)
T ss_pred ccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCC
Confidence 999999999999999999999999999999999999999877777 466 56788999999999999875 4
Q ss_pred cEEEEEEcCC
Q 039378 527 GVSHTFFTNH 536 (600)
Q Consensus 527 g~~~~~~~~~ 536 (600)
|.++++.+..
T Consensus 399 G~~~i~~~~~ 408 (766)
T COG1204 399 GEAIILATSH 408 (766)
T ss_pred CcEEEEecCc
Confidence 6666666333
No 70
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.7e-35 Score=331.27 Aligned_cols=328 Identities=22% Similarity=0.267 Sum_probs=237.9
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
+.-+|+++|..++..++.+ ++|+++|||+|||+++++++...+ ..+ +.++|||+||++|+.|+.+.+..
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l-~~~---------~~~vLvl~Pt~~L~~Q~~~~~~~ 80 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERL-HKK---------GGKVLILAPTKPLVEQHAEFFRK 80 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHH-HhC---------CCeEEEEeCcHHHHHHHHHHHHH
Confidence 3457899999999988887 899999999999999888877665 221 34589999999999999999999
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhc
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~ 356 (600)
+....+..+..+.|+..... ...+..+++|+|+||+.+...+....+.+.++++|||||||++........+...+...
T Consensus 81 ~~~~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~ 159 (773)
T PRK13766 81 FLNIPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHED 159 (773)
T ss_pred HhCCCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhc
Confidence 86544456677777665543 33444568999999999988777777788899999999999987643333333333333
Q ss_pred CcCCcEEEEeccCChhH---HHHHHHhcCCCCeEE--------------------EECCc--------------------
Q 039378 357 SLARQMVMFSATWPIEV---HKLAEEYMDPNPVKV--------------------VVGSE-------------------- 393 (600)
Q Consensus 357 ~~~~q~i~~SATl~~~~---~~~~~~~~~~~~~~i--------------------~~~~~-------------------- 393 (600)
...+++++||||+.... ..++..+. ...+.+ .+.-.
T Consensus 160 ~~~~~il~lTaTP~~~~~~i~~~~~~L~-i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~ 238 (773)
T PRK13766 160 AKNPLVLGLTASPGSDEEKIKEVCENLG-IEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKK 238 (773)
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHhCC-ceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 44567999999963222 11121111 000000 00000
Q ss_pred ----ccccCCC--------------eeEE---------------------------------------------------
Q 039378 394 ----DLAANHD--------------VMQI--------------------------------------------------- 404 (600)
Q Consensus 394 ----~~~~~~~--------------~~~~--------------------------------------------------- 404 (600)
....... +...
T Consensus 239 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~ 318 (773)
T PRK13766 239 LKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSG 318 (773)
T ss_pred HHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccC
Confidence 0000000 0000
Q ss_pred ---------------------EEEecCcchHHHHHHHHHHHhh-cCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCC
Q 039378 405 ---------------------VEVLDDRSRDQRLLALLEKYHK-SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGK 462 (600)
Q Consensus 405 ---------------------~~~~~~~~~~~~l~~~l~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~ 462 (600)
........+...+..++..... ..+.++||||+++.++..|...|...++.+..+||.
T Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~ 398 (773)
T PRK13766 319 GSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQ 398 (773)
T ss_pred CcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcc
Confidence 0000112233444444444322 356799999999999999999999999999999986
Q ss_pred --------CCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEc
Q 039378 463 --------KAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534 (600)
Q Consensus 463 --------~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~ 534 (600)
|++.+|..++.+|+.|.+.|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| .|.++.++.
T Consensus 399 ~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~ 477 (773)
T PRK13766 399 ASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIA 477 (773)
T ss_pred ccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999987 588998888
Q ss_pred CCcH
Q 039378 535 NHNK 538 (600)
Q Consensus 535 ~~d~ 538 (600)
....
T Consensus 478 ~~t~ 481 (773)
T PRK13766 478 KGTR 481 (773)
T ss_pred CCCh
Confidence 7653
No 71
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1e-36 Score=292.33 Aligned_cols=325 Identities=21% Similarity=0.265 Sum_probs=240.7
Q ss_pred CCC-CCcHHHHHHhhhhhcC-CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHH
Q 039378 197 NFK-NPSPIQSHAWPFLLNG-RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274 (600)
Q Consensus 197 ~~~-~~~~~Q~~~i~~il~~-~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~ 274 (600)
|+. .-++.|.+++..+..+ .||.+++|||+||++||++|+|.+ +...||+.|..+|.....+.+
T Consensus 16 Gh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--------------~gITIV~SPLiALIkDQiDHL 81 (641)
T KOG0352|consen 16 GHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--------------GGITIVISPLIALIKDQIDHL 81 (641)
T ss_pred CchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------------CCeEEEehHHHHHHHHHHHHH
Confidence 554 3479999999998877 599999999999999999999875 224799999999999999998
Q ss_pred HHhcCCCCceEEEEeCCCChHHHHHH------HhcCCcEEEEchHHHHH-----HHHccCCCccceEEEEEcccchhhcC
Q 039378 275 NDAGKPCGVKSVCVYGGTSKQPQITA------LRSGVDIVIGTPGRLID-----LIEMNVCHLSEVSFVVLDEADRMLDM 343 (600)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~------l~~~~~Iiv~Tp~~l~~-----~l~~~~~~l~~~~~lViDEah~l~~~ 343 (600)
.++- +.+..+..-.+..+..+. .+....|++-||++-.. ++. ....-..+.|+|+||||...+|
T Consensus 82 ~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vVDEAHCVSQW 156 (641)
T KOG0352|consen 82 KRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVVDEAHCVSQW 156 (641)
T ss_pred HhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeeeEEechhhhHhhh
Confidence 8875 334444444443333222 23457899999987532 221 1223345899999999999999
Q ss_pred CCh--HHHH---HHHHhcCcCCcEEEEeccCChhHHHHHHHhcC-CCCeEEEECCcccccCCCeeEEEEEe---cCcchH
Q 039378 344 GFE--EPVR---FILSKISLARQMVMFSATWPIEVHKLAEEYMD-PNPVKVVVGSEDLAANHDVMQIVEVL---DDRSRD 414 (600)
Q Consensus 344 ~~~--~~~~---~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~ 414 (600)
|+. +.+. .+.+.+ .....+.++||.++.+.+-+-..+. .+|+.+.-.+.- ..+. ++... .-.+..
T Consensus 157 GHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F-R~NL----FYD~~~K~~I~D~~ 230 (641)
T KOG0352|consen 157 GHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF-RDNL----FYDNHMKSFITDCL 230 (641)
T ss_pred ccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch-hhhh----hHHHHHHHHhhhHh
Confidence 854 3322 223333 3456899999999988765433322 455554433211 1110 00000 011222
Q ss_pred HHHHHHHHHHhh----------cCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEE
Q 039378 415 QRLLALLEKYHK----------SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMV 484 (600)
Q Consensus 415 ~~l~~~l~~~~~----------~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLv 484 (600)
..|.++...... ...+..||||.+++.+++++-.|...|+++..+|+++...+|..+.+.|.++++.||+
T Consensus 231 ~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~ 310 (641)
T KOG0352|consen 231 TVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIA 310 (641)
T ss_pred HhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEE
Confidence 333333332221 2346789999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHH
Q 039378 485 ATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546 (600)
Q Consensus 485 aT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~ 546 (600)
||..+++|+|-|+|++|||+++|.|+..|.|-.||+||.|....|..||+.+|...+.-|+.
T Consensus 311 AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 311 ATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred EEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999887766544
No 72
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=8e-36 Score=326.34 Aligned_cols=323 Identities=21% Similarity=0.292 Sum_probs=249.4
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
|+..++|-|.++|..++.|+|+++.+|||.||++||++|++.. ++..|||.|..+|++.+...+..
T Consensus 261 g~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~--------------~gitvVISPL~SLm~DQv~~L~~ 326 (941)
T KOG0351|consen 261 GHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL--------------GGVTVVISPLISLMQDQVTHLSK 326 (941)
T ss_pred ccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc--------------CCceEEeccHHHHHHHHHHhhhh
Confidence 8899999999999999999999999999999999999998754 33579999999998777666643
Q ss_pred hcCCCCceEEEEeCCCChHHH---HHHHhc---CCcEEEEchHHHHHHH--HccCCCccc---eEEEEEcccchhhcCC-
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQ---ITALRS---GVDIVIGTPGRLIDLI--EMNVCHLSE---VSFVVLDEADRMLDMG- 344 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~---~~~l~~---~~~Iiv~Tp~~l~~~l--~~~~~~l~~---~~~lViDEah~l~~~~- 344 (600)
. +|....+.++.....+ .+.+.. .++|+..||+++...- ......+.. +.++||||||+..+||
T Consensus 327 ~----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgH 402 (941)
T KOG0351|consen 327 K----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGH 402 (941)
T ss_pred c----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcc
Confidence 3 4777778777766533 233333 3799999999986532 112223444 8999999999999998
Q ss_pred -ChHHHHH---HHHhcCcCCcEEEEeccCChhHHHHHHHhcCC-CCeEEEECCcccccCCCeeEEEEEecCc--chHHHH
Q 039378 345 -FEEPVRF---ILSKISLARQMVMFSATWPIEVHKLAEEYMDP-NPVKVVVGSEDLAANHDVMQIVEVLDDR--SRDQRL 417 (600)
Q Consensus 345 -~~~~~~~---il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l 417 (600)
|++.+.. +....+. ..+|.+|||.+..+..-+-..+.. ++..+. .. . ...++ ++.+.... .....+
T Consensus 403 dFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~-~s-f--nR~NL--~yeV~~k~~~~~~~~~ 475 (941)
T KOG0351|consen 403 DFRPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELFK-SS-F--NRPNL--KYEVSPKTDKDALLDI 475 (941)
T ss_pred cccHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcceec-cc-C--CCCCc--eEEEEeccCccchHHH
Confidence 4444443 3334433 679999999999888766665533 333222 11 1 11112 22222222 222233
Q ss_pred HHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCC
Q 039378 418 LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497 (600)
Q Consensus 418 ~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~ 497 (600)
...+..+ .....+||||.++.+++.++..|+..++.+..+|++|+..+|..+...|..++++|+|||=++++|||.|+
T Consensus 476 ~~~~~~~--~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~D 553 (941)
T KOG0351|consen 476 LEESKLR--HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPD 553 (941)
T ss_pred HHHhhhc--CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCc
Confidence 3333333 24568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHH
Q 039378 498 VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546 (600)
Q Consensus 498 v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~ 546 (600)
|+.||||.+|.+.+.|+|-+|||||.|....|++||...|...+..++.
T Consensus 554 VR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 554 VRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred eeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998776655543
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.4e-34 Score=294.80 Aligned_cols=293 Identities=18% Similarity=0.197 Sum_probs=200.0
Q ss_pred HHHHHhhhhhcCCc--EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCC-
Q 039378 204 IQSHAWPFLLNGRD--FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP- 280 (600)
Q Consensus 204 ~Q~~~i~~il~~~d--~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~- 280 (600)
+|.++++.+.++.+ ++++||||||||.+|++|++.. ..++++++|+++|+.|+++.+..+...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------------ENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------------CCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 49999999999874 7889999999999999998741 123699999999999999998887632
Q ss_pred ---CCceEEEEeCCCChHH--HH-------------------HHHhcCCcEEEEchHHHHHHHHccC--------CCccc
Q 039378 281 ---CGVKSVCVYGGTSKQP--QI-------------------TALRSGVDIVIGTPGRLIDLIEMNV--------CHLSE 328 (600)
Q Consensus 281 ---~~~~~~~~~~g~~~~~--~~-------------------~~l~~~~~Iiv~Tp~~l~~~l~~~~--------~~l~~ 328 (600)
.+..+..+.|. .... .. ......+.|++|||+.|..++.... ..+.+
T Consensus 67 ~~~~~~~v~~~~g~-~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~ 145 (357)
T TIGR03158 67 KPERDVNLLHVSKA-TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTK 145 (357)
T ss_pred CCCCCceEEEecCC-chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcC
Confidence 23444444443 2111 00 0112358899999999976654321 12578
Q ss_pred eEEEEEcccchhhcCCCh-----HHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhc-CCCCeEEEECCc---------
Q 039378 329 VSFVVLDEADRMLDMGFE-----EPVRFILSKISLARQMVMFSATWPIEVHKLAEEYM-DPNPVKVVVGSE--------- 393 (600)
Q Consensus 329 ~~~lViDEah~l~~~~~~-----~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~-~~~~~~i~~~~~--------- 393 (600)
+++|||||+|.+..+... .....++.......+++++|||+++.+........ ...+.....+..
T Consensus 146 ~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~ 225 (357)
T TIGR03158 146 FSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPEL 225 (357)
T ss_pred CCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhh
Confidence 999999999998754321 12233333333457999999999988777666541 133333322220
Q ss_pred --ccc------cCCCeeEEEEEecCcchHHHHHHHHHHH----hhcCCCeEEEEEeehhcHHHHHHHHHhCC--CeEEEE
Q 039378 394 --DLA------ANHDVMQIVEVLDDRSRDQRLLALLEKY----HKSQRNRVLVFALYQLEADRLENMLRRSG--WKVVAI 459 (600)
Q Consensus 394 --~~~------~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~lVF~~s~~~~~~l~~~L~~~~--~~~~~l 459 (600)
... ....+.+.+.. ....+...+..++... ....++++||||+++..++.++..|+..+ +.+..+
T Consensus 226 ~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l 304 (357)
T TIGR03158 226 EADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRI 304 (357)
T ss_pred hccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEee
Confidence 000 00123232222 2223333333333322 12346799999999999999999999764 578899
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhcc
Q 039378 460 HGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTG 521 (600)
Q Consensus 460 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~g 521 (600)
||.+++.+|.++ ++..|||||++++||||++.+ +|| ++ |.++..|+||+||+|
T Consensus 305 ~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 305 TGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999999998754 478899999999999999986 666 55 889999999999997
No 74
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.4e-35 Score=309.21 Aligned_cols=339 Identities=20% Similarity=0.238 Sum_probs=248.6
Q ss_pred hhcCCCCCcHHHHHHhhhhhcCC-cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHH
Q 039378 194 CCKNFKNPSPIQSHAWPFLLNGR-DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYD 272 (600)
Q Consensus 194 ~~~~~~~~~~~Q~~~i~~il~~~-d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~ 272 (600)
.+.+|..+..+|..++|.+...+ |+|||||||||||..|++.+++.+.+ ............++++|+|+++||..+.+
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~-~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKE-HEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHh-hccccccccCCceEEEEechHHHHHHHHH
Confidence 34478899999999999999764 89999999999999999988877765 33333445567889999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc---CCCccceEEEEEcccchhhcCCChHHH
Q 039378 273 VLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN---VCHLSEVSFVVLDEADRMLDMGFEEPV 349 (600)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~---~~~l~~~~~lViDEah~l~~~~~~~~~ 349 (600)
.|.+-....|+.+..++|+....... -..++|||+||+++--.-++. ...++.+++|||||+|.|.+. .++.+
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvl 258 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVL 258 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchH
Confidence 99998888899999999987655443 123899999999973332222 224678999999999987765 77888
Q ss_pred HHHHHhcC-------cCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCc---chHHH---
Q 039378 350 RFILSKIS-------LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDR---SRDQR--- 416 (600)
Q Consensus 350 ~~il~~~~-------~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--- 416 (600)
+.|+.++. ...+++++|||+|+... +..|++.+|..-.........+..+.+.+..+... .....
T Consensus 259 EtiVaRtlr~vessqs~IRivgLSATlPN~eD--vA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~ 336 (1230)
T KOG0952|consen 259 ETIVARTLRLVESSQSMIRIVGLSATLPNYED--VARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDE 336 (1230)
T ss_pred HHHHHHHHHHHHhhhhheEEEEeeccCCCHHH--HHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHH
Confidence 88776653 44589999999997544 34566555333222222223333444444443332 11111
Q ss_pred --HHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCC-----------------------CeEEEEcCCCCHHHHHHH
Q 039378 417 --LLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSG-----------------------WKVVAIHGKKAQHERTKS 471 (600)
Q Consensus 417 --l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~-----------------------~~~~~l~~~~~~~~r~~~ 471 (600)
..+.+..+ ..++++||||+++..+.+.++.|.+.+ ..+..+|++|...+|..+
T Consensus 337 ~~~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~ 414 (1230)
T KOG0952|consen 337 VCYDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLV 414 (1230)
T ss_pred HHHHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHH
Confidence 11122222 237899999999999999998886431 246889999999999999
Q ss_pred HHHHhcCCCCEEEeccccccCCCCCCcCEEE----EcCCC------CChhhHHHHhhhccCC--CCccEEEEEEcCCcHh
Q 039378 472 LSLFKEGTCPLMVATDVAARGLDIPDVEVVI----NYSFP------LTTEDYVHRIGRTGRA--GKKGVSHTFFTNHNKA 539 (600)
Q Consensus 472 ~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI----~~d~p------~s~~~y~qr~GR~gR~--g~~g~~~~~~~~~d~~ 539 (600)
...|..|.++||+||..+++|+|+|+-.++| .||.- .+..+.+|..|||||- +..|.++++.+.+-..
T Consensus 415 E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 415 EKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred HHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHH
Confidence 9999999999999999999999999766555 24432 3567789999999994 4578888877765544
Q ss_pred HH
Q 039378 540 LA 541 (600)
Q Consensus 540 ~~ 541 (600)
.+
T Consensus 495 ~Y 496 (1230)
T KOG0952|consen 495 HY 496 (1230)
T ss_pred HH
Confidence 43
No 75
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.6e-34 Score=323.26 Aligned_cols=301 Identities=19% Similarity=0.307 Sum_probs=208.6
Q ss_pred HHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEccc----HHHHHHHHHHHHH-hcCC
Q 039378 206 SHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPT----RELADQIYDVLND-AGKP 280 (600)
Q Consensus 206 ~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Pt----r~La~q~~~~~~~-~~~~ 280 (600)
.+.+..+..++.+|++|+||||||+ ++|.+........ ...+++..|. ++||.++.+++.. ++..
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~--------~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~ 149 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGV--------KGLIGHTQPRRLAARTVANRIAEELETELGGC 149 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCC--------CCceeeCCCcHHHHHHHHHHHHHHHhhhhcce
Confidence 3455555666678889999999999 5886544322111 1124445574 5777777777764 3333
Q ss_pred CCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccc-hhhcCCChHH-HHHHHHhcCc
Q 039378 281 CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEAD-RMLDMGFEEP-VRFILSKISL 358 (600)
Q Consensus 281 ~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah-~l~~~~~~~~-~~~il~~~~~ 358 (600)
.|+. +.... ....++.|+|+|||+|++.+..+. .++++++||||||| ++++.+|... +..++.. .+
T Consensus 150 VGY~----vrf~~------~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rp 217 (1294)
T PRK11131 150 VGYK----VRFND------QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RP 217 (1294)
T ss_pred ecee----ecCcc------ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhc-CC
Confidence 2321 11111 112458999999999999987654 49999999999999 6888777542 3333322 24
Q ss_pred CCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCc------chHHHHHHHHHHHhhcCCCeE
Q 039378 359 ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDR------SRDQRLLALLEKYHKSQRNRV 432 (600)
Q Consensus 359 ~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~~~~~~~~~ 432 (600)
..|+|+||||++.. .+.. ++...|. +.+..... .+..++...... .....++..+..+.....+.+
T Consensus 218 dlKvILmSATid~e--~fs~-~F~~apv-I~V~Gr~~----pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdI 289 (1294)
T PRK11131 218 DLKVIITSATIDPE--RFSR-HFNNAPI-IEVSGRTY----PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDI 289 (1294)
T ss_pred CceEEEeeCCCCHH--HHHH-HcCCCCE-EEEcCccc----cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCE
Confidence 57999999999753 4444 4434554 44443221 233333332211 122233333333333456889
Q ss_pred EEEEeehhcHHHHHHHHHhCCCe---EEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcC----
Q 039378 433 LVFALYQLEADRLENMLRRSGWK---VVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYS---- 505 (600)
Q Consensus 433 lVF~~s~~~~~~l~~~L~~~~~~---~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d---- 505 (600)
||||++..+++.++..|...++. +..+||+|++.+|..+++. .|..+|||||+++++|||||+|++||+++
T Consensus 290 LVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~ 367 (1294)
T PRK11131 290 LIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARI 367 (1294)
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccc
Confidence 99999999999999999987654 7899999999999999886 47889999999999999999999999986
Q ss_pred -----------CC---CChhhHHHHhhhccCCCCccEEEEEEcCCcHh
Q 039378 506 -----------FP---LTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539 (600)
Q Consensus 506 -----------~p---~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~ 539 (600)
+| .|.++|.||+|||||. ++|.|+.||+..+..
T Consensus 368 ~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 368 SRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred cccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 33 4558899999999999 599999999987643
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=317.49 Aligned_cols=323 Identities=25% Similarity=0.321 Sum_probs=248.5
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
|...|+++|.+|+..+.+|+|+||+.+||||||.+|++|++.++++.+.. ++|+|.||++||..+.+.|.+
T Consensus 67 g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a---------~AL~lYPtnALa~DQ~~rl~~ 137 (851)
T COG1205 67 GIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA---------RALLLYPTNALANDQAERLRE 137 (851)
T ss_pred ccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc---------cEEEEechhhhHhhHHHHHHH
Confidence 67779999999999999999999999999999999999999999998653 479999999999999999999
Q ss_pred hcCCCC--ceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc----CCCccceEEEEEcccchhhcCCChHHHH
Q 039378 277 AGKPCG--VKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN----VCHLSEVSFVVLDEADRMLDMGFEEPVR 350 (600)
Q Consensus 277 ~~~~~~--~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~----~~~l~~~~~lViDEah~l~~~~~~~~~~ 350 (600)
+....+ +......|..............++||+|||.+|..++.+. ...++++++||+||+|.+-.- |+..+.
T Consensus 138 ~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv-~GS~vA 216 (851)
T COG1205 138 LISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV-QGSEVA 216 (851)
T ss_pred HHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc-chhHHH
Confidence 887766 5555555655555554666778999999999998855432 234678999999999987653 555555
Q ss_pred HHHHhc-------CcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEec---------CcchH
Q 039378 351 FILSKI-------SLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD---------DRSRD 414 (600)
Q Consensus 351 ~il~~~-------~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 414 (600)
.+++++ +...|+|+.|||+... ..+...+++. .....+.... .......+....+ ..+..
T Consensus 217 ~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~-~f~~~v~~~g--~~~~~~~~~~~~p~~~~~~~~~r~s~~ 292 (851)
T COG1205 217 LLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGR-DFEVPVDEDG--SPRGLRYFVRREPPIRELAESIRRSAL 292 (851)
T ss_pred HHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCC-cceeeccCCC--CCCCceEEEEeCCcchhhhhhcccchH
Confidence 554433 4567999999998655 4455566533 3333222221 1222222333222 12333
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeehhcHHHHH----HHHHhCC----CeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEec
Q 039378 415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLE----NMLRRSG----WKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486 (600)
Q Consensus 415 ~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~----~~L~~~~----~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT 486 (600)
..+..+...... .+-++|||+.++..+..+. ..+...+ ..+..++|+|...+|.++...|+.|+..++++|
T Consensus 293 ~~~~~~~~~~~~-~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st 371 (851)
T COG1205 293 AELATLAALLVR-NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIAT 371 (851)
T ss_pred HHHHHHHHHHHH-cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecc
Confidence 333334433332 3679999999999999986 4444444 568999999999999999999999999999999
Q ss_pred cccccCCCCCCcCEEEEcCCCC-ChhhHHHHhhhccCCCCccEEEEEEc
Q 039378 487 DVAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGRAGKKGVSHTFFT 534 (600)
Q Consensus 487 ~~~~~Gldi~~v~~VI~~d~p~-s~~~y~qr~GR~gR~g~~g~~~~~~~ 534 (600)
+++.-|+||.+++.||.++.|. +..+++||+||+||.++.+..+..+.
T Consensus 372 ~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 372 NALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred hhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9999999999999999999999 89999999999999997777776666
No 77
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.7e-34 Score=306.93 Aligned_cols=321 Identities=17% Similarity=0.185 Sum_probs=216.1
Q ss_pred CCCcHHHHHHhhhhhc-C--CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHH
Q 039378 199 KNPSPIQSHAWPFLLN-G--RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN 275 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~-~--~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~ 275 (600)
..++|+|.+++..+.. + +..++++|||+|||++.+. ++..+. .++|||||+.+|+.||.+.|.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~-aa~~l~-------------k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVT-AACTVK-------------KSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHH-HHHHhC-------------CCEEEEeCcHHHHHHHHHHHH
Confidence 4689999999998873 4 3689999999999998543 333321 127999999999999999999
Q ss_pred HhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHc--------cCCCccceEEEEEcccchhhcCCChH
Q 039378 276 DAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEM--------NVCHLSEVSFVVLDEADRMLDMGFEE 347 (600)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~--------~~~~l~~~~~lViDEah~l~~~~~~~ 347 (600)
++.......+..+.|+.... .....+|+|+|+..+.....+ ..+.-..|++||+||||++.. .
T Consensus 320 ~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~ 390 (732)
T TIGR00603 320 MWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----A 390 (732)
T ss_pred HhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----H
Confidence 98754444455555543221 112368999999987542211 112235789999999999854 3
Q ss_pred HHHHHHHhcCcCCcEEEEeccCChhHHHH--HHHhcCCCCeEEEECCcccccCCCeeEE---EEEec-------------
Q 039378 348 PVRFILSKISLARQMVMFSATWPIEVHKL--AEEYMDPNPVKVVVGSEDLAANHDVMQI---VEVLD------------- 409 (600)
Q Consensus 348 ~~~~il~~~~~~~q~i~~SATl~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~------------- 409 (600)
.+..++..+. ....++||||+....... +..++ .|......-.++.....+..+ -..++
T Consensus 391 ~fr~il~~l~-a~~RLGLTATP~ReD~~~~~L~~Li--GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~ 467 (732)
T TIGR00603 391 MFRRVLTIVQ-AHCKLGLTATLVREDDKITDLNFLI--GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLREN 467 (732)
T ss_pred HHHHHHHhcC-cCcEEEEeecCcccCCchhhhhhhc--CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhc
Confidence 3455665553 346899999986433221 11222 233222221111101111000 00111
Q ss_pred ----------CcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC-
Q 039378 410 ----------DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEG- 478 (600)
Q Consensus 410 ----------~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g- 478 (600)
...+...+..++... ...+.++||||.+...+..++..|. +..+||.+++.+|.++++.|+.|
T Consensus 468 ~~~k~~l~~~np~K~~~~~~Li~~h-e~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~ 541 (732)
T TIGR00603 468 SRKRMLLYVMNPNKFRACQFLIRFH-EQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNP 541 (732)
T ss_pred chhhhHHhhhChHHHHHHHHHHHHH-hhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCC
Confidence 111222222333322 2356799999999999998888873 45699999999999999999875
Q ss_pred CCCEEEeccccccCCCCCCcCEEEEcCCCC-ChhhHHHHhhhccCCCCccEE-------EEEEcCCcHhH--HHHHHHHH
Q 039378 479 TCPLMVATDVAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGRAGKKGVS-------HTFFTNHNKAL--AGELVNVL 548 (600)
Q Consensus 479 ~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~-s~~~y~qr~GR~gR~g~~g~~-------~~~~~~~d~~~--~~~i~~~l 548 (600)
.+++||+|+++.+|||+|++++||+++.|. |...|+||+||++|.+..|.+ |+|++.+..++ ...-..+|
T Consensus 542 ~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl 621 (732)
T TIGR00603 542 KVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFL 621 (732)
T ss_pred CccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHH
Confidence 789999999999999999999999999985 999999999999999876664 88888876544 33444555
Q ss_pred HHh
Q 039378 549 REA 551 (600)
Q Consensus 549 ~~~ 551 (600)
-.+
T Consensus 622 ~~q 624 (732)
T TIGR00603 622 VDQ 624 (732)
T ss_pred HHC
Confidence 544
No 78
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=8.9e-34 Score=296.59 Aligned_cols=326 Identities=23% Similarity=0.286 Sum_probs=226.7
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
..-.++.||.+.+..++ |+|+||++|||+|||++++.-++.++-..+. .++++++||+-|+.|....+..
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~---------~KiVF~aP~~pLv~QQ~a~~~~ 128 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK---------GKVVFLAPTRPLVNQQIACFSI 128 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc---------ceEEEeeCCchHHHHHHHHHhh
Confidence 44478899999999888 9999999999999999988877777665543 4589999999999998888888
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCC-ccceEEEEEcccchhhcC-CChHHHHHHHH
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCH-LSEVSFVVLDEADRMLDM-GFEEPVRFILS 354 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~-l~~~~~lViDEah~l~~~-~~~~~~~~il~ 354 (600)
++.. ..+....||.........+-...+|+|+||..|.+-|...... ++.|.++||||||+-... .|...+...+.
T Consensus 129 ~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~ 206 (746)
T KOG0354|consen 129 YLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLD 206 (746)
T ss_pred ccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHH
Confidence 7755 4455555664443333344455899999999999888765433 689999999999997654 34445545665
Q ss_pred hcCcCCcEEEEeccCChhHHHHHHH--------------------------------------------------hc---
Q 039378 355 KISLARQMVMFSATWPIEVHKLAEE--------------------------------------------------YM--- 381 (600)
Q Consensus 355 ~~~~~~q~i~~SATl~~~~~~~~~~--------------------------------------------------~~--- 381 (600)
.-....|+|++|||+.......... ++
T Consensus 207 ~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l 286 (746)
T KOG0354|consen 207 LKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQL 286 (746)
T ss_pred hhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHH
Confidence 5555569999999975432221110 00
Q ss_pred C-CCCeEEEECC---------cccccCCCee--EE--------------------EEEec--------------------
Q 039378 382 D-PNPVKVVVGS---------EDLAANHDVM--QI--------------------VEVLD-------------------- 409 (600)
Q Consensus 382 ~-~~~~~i~~~~---------~~~~~~~~~~--~~--------------------~~~~~-------------------- 409 (600)
. ..-..+.... .......+.. +. ..+.+
T Consensus 287 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~ 366 (746)
T KOG0354|consen 287 QEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKL 366 (746)
T ss_pred HhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHH
Confidence 0 0000000000 0000000000 00 00000
Q ss_pred --------------------------CcchHHHHHHHHHHH-hhcCCCeEEEEEeehhcHHHHHHHHHhC---CCeEEEE
Q 039378 410 --------------------------DRSRDQRLLALLEKY-HKSQRNRVLVFALYQLEADRLENMLRRS---GWKVVAI 459 (600)
Q Consensus 410 --------------------------~~~~~~~l~~~l~~~-~~~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~l 459 (600)
...+...+..++... ......++||||.++..|..|..+|... ++....+
T Consensus 367 ~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~f 446 (746)
T KOG0354|consen 367 ELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIF 446 (746)
T ss_pred HhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccccccee
Confidence 112222333322222 2234579999999999999999999732 3444444
Q ss_pred cC--------CCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEE
Q 039378 460 HG--------KKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHT 531 (600)
Q Consensus 460 ~~--------~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~ 531 (600)
-| +|++.++..+++.|++|.+.|||||++++.||||+.++.||-||.-.|+...+||.|| ||+ +.|.++.
T Consensus 447 iGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vl 524 (746)
T KOG0354|consen 447 IGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVL 524 (746)
T ss_pred eeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEE
Confidence 33 8999999999999999999999999999999999999999999999999999999999 998 4889999
Q ss_pred EEcCC
Q 039378 532 FFTNH 536 (600)
Q Consensus 532 ~~~~~ 536 (600)
+++..
T Consensus 525 l~t~~ 529 (746)
T KOG0354|consen 525 LTTGS 529 (746)
T ss_pred EEcch
Confidence 98843
No 79
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=4.7e-34 Score=270.18 Aligned_cols=366 Identities=18% Similarity=0.260 Sum_probs=259.7
Q ss_pred HHHHhhcCCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHH
Q 039378 190 DVLGCCKNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQ 269 (600)
Q Consensus 190 ~l~~~~~~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q 269 (600)
.++.......+++|.|..+|+..+.|.++++..|||.||++||++|++.. ...+|||||...|+..
T Consensus 84 ~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a--------------dg~alvi~plislmed 149 (695)
T KOG0353|consen 84 DILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA--------------DGFALVICPLISLMED 149 (695)
T ss_pred HHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc--------------CCceEeechhHHHHHH
Confidence 34443335678999999999999999999999999999999999999864 3447999999999987
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCChHHHHH------HHhcCCcEEEEchHHHHHH---HHc--cCCCccceEEEEEcccc
Q 039378 270 IYDVLNDAGKPCGVKSVCVYGGTSKQPQIT------ALRSGVDIVIGTPGRLIDL---IEM--NVCHLSEVSFVVLDEAD 338 (600)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~l~~~~~Iiv~Tp~~l~~~---l~~--~~~~l~~~~~lViDEah 338 (600)
..-.++.++ +....+....+.....+ .-.+...+++.||+.+... +.+ ..+....+.+|.+||+|
T Consensus 150 qil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevh 225 (695)
T KOG0353|consen 150 QILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVH 225 (695)
T ss_pred HHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeeccee
Confidence 777788775 55555555544433221 1123468999999988542 221 23445678999999999
Q ss_pred hhhcCCC--hHHHH--HHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEec-Ccch
Q 039378 339 RMLDMGF--EEPVR--FILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD-DRSR 413 (600)
Q Consensus 339 ~l~~~~~--~~~~~--~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~ 413 (600)
...+||+ ++.+. .++.+--++..+++++||.+..+-.-++..+........... +. ..++ .+.+.. ....
T Consensus 226 ccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~--fn-r~nl--~yev~qkp~n~ 300 (695)
T KOG0353|consen 226 CCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG--FN-RPNL--KYEVRQKPGNE 300 (695)
T ss_pred ehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc--cC-CCCc--eeEeeeCCCCh
Confidence 9999984 33332 345554456779999999988877766665533222221111 11 1111 122222 2222
Q ss_pred HHHHHHHHHHHhh-cCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccC
Q 039378 414 DQRLLALLEKYHK-SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARG 492 (600)
Q Consensus 414 ~~~l~~~l~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~G 492 (600)
...+.++...+.. ..+...||||-|+.+++.++..|+..|+.+..+|+.|.+.+|..+-+.|..|+++|+|+|-++++|
T Consensus 301 dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmg 380 (695)
T KOG0353|consen 301 DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMG 380 (695)
T ss_pred HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeeccc
Confidence 3333333333322 235578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCEEEEcCCCCChhhHHH-------------------------------------------HhhhccCCCCccEE
Q 039378 493 LDIPDVEVVINYSFPLTTEDYVH-------------------------------------------RIGRTGRAGKKGVS 529 (600)
Q Consensus 493 ldi~~v~~VI~~d~p~s~~~y~q-------------------------------------------r~GR~gR~g~~g~~ 529 (600)
||-|+|++|||..+|.|++.|.| ..||+||.+.+..|
T Consensus 381 idkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~c 460 (695)
T KOG0353|consen 381 IDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADC 460 (695)
T ss_pred CCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccE
Confidence 99999999999999999999999 67999999999999
Q ss_pred EEEEcCCcHhHHHHHHHHHHHhcCCCcHHHHhhhhhhhhhhccccccccc
Q 039378 530 HTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVKKKESKLYGAHFR 579 (600)
Q Consensus 530 ~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l~~~~~~~~~~~~~~~~~~~~ 579 (600)
+.||.-.|.-.....+...+ .++.---.+..++..+.+.+.-.+...|.
T Consensus 461 ilyy~~~difk~ssmv~~e~-~g~q~ly~mv~y~~d~s~crrv~laehfd 509 (695)
T KOG0353|consen 461 ILYYGFADIFKISSMVQMEN-TGIQKLYEMVRYAADISKCRRVKLAEHFD 509 (695)
T ss_pred EEEechHHHHhHHHHHHHHh-hhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99998887655444443332 12211123334444444444444444443
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=7.3e-33 Score=306.18 Aligned_cols=335 Identities=16% Similarity=0.175 Sum_probs=215.4
Q ss_pred CCcHHHHHHhhhhhcC--CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 200 NPSPIQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~--~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
.|.|+|..++..++.. ..+|+++++|.|||+.+.+. +..++.... ..++|||||. .|+.||..++.+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAgli-l~~l~~~g~--------~~rvLIVvP~-sL~~QW~~El~~k 221 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMI-IHQQLLTGR--------AERVLILVPE-TLQHQWLVEMLRR 221 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHH-HHHHHHcCC--------CCcEEEEcCH-HHHHHHHHHHHHH
Confidence 6999999998877654 37999999999999986554 444433322 2248999998 8999999999765
Q ss_pred cCCCCceEEEEeCCCChHHH--HHHHhcCCcEEEEchHHHHHHHH-ccCCCccceEEEEEcccchhhcCC--ChHHHHHH
Q 039378 278 GKPCGVKSVCVYGGTSKQPQ--ITALRSGVDIVIGTPGRLIDLIE-MNVCHLSEVSFVVLDEADRMLDMG--FEEPVRFI 352 (600)
Q Consensus 278 ~~~~~~~~~~~~~g~~~~~~--~~~l~~~~~Iiv~Tp~~l~~~l~-~~~~~l~~~~~lViDEah~l~~~~--~~~~~~~i 352 (600)
.. +...++.++...... ........+++|+|++.+...-. ...+.-..|++|||||||++.... -...+..+
T Consensus 222 F~---l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 222 FN---LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred hC---CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 42 333333222111000 00111236899999998864211 111223478999999999997321 12223333
Q ss_pred HHhcCcCCcEEEEeccCCh-hHH-------------------------------HHHHHhcCCCC---------------
Q 039378 353 LSKISLARQMVMFSATWPI-EVH-------------------------------KLAEEYMDPNP--------------- 385 (600)
Q Consensus 353 l~~~~~~~q~i~~SATl~~-~~~-------------------------------~~~~~~~~~~~--------------- 385 (600)
.........++++|||+-. ... .++..++...+
T Consensus 299 ~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~ 378 (956)
T PRK04914 299 EQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGE 378 (956)
T ss_pred HHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcc
Confidence 3333344679999999421 000 00000110000
Q ss_pred ------------------------------------eEEEECCcccc-cCCCeeEEEEE-ec------------------
Q 039378 386 ------------------------------------VKVVVGSEDLA-ANHDVMQIVEV-LD------------------ 409 (600)
Q Consensus 386 ------------------------------------~~i~~~~~~~~-~~~~~~~~~~~-~~------------------ 409 (600)
+.+.-...... ......+.+.. .+
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~ 458 (956)
T PRK04914 379 QDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDM 458 (956)
T ss_pred cchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhh
Confidence 00000000000 00000000000 00
Q ss_pred ------------------CcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHH-hCCCeEEEEcCCCCHHHHHH
Q 039378 410 ------------------DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLR-RSGWKVVAIHGKKAQHERTK 470 (600)
Q Consensus 410 ------------------~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~-~~~~~~~~l~~~~~~~~r~~ 470 (600)
...+...+..++ ......++||||+++.++..|+..|. ..|+.+..+||+|++.+|.+
T Consensus 459 l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L---~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~ 535 (956)
T PRK04914 459 LYPEQIYQEFEDNATWWNFDPRVEWLIDFL---KSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDR 535 (956)
T ss_pred cCHHHHHHHHhhhhhccccCHHHHHHHHHH---HhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHH
Confidence 001112222222 22346799999999999999999994 66999999999999999999
Q ss_pred HHHHHhcC--CCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHH
Q 039378 471 SLSLFKEG--TCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVL 548 (600)
Q Consensus 471 ~~~~F~~g--~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l 548 (600)
+++.|+++ ...|||||+++++|+|++.+++|||||+||||..|.||+||+||.|++|.+.+++..........|.+++
T Consensus 536 ~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~ 615 (956)
T PRK04914 536 AAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWY 615 (956)
T ss_pred HHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHH
Confidence 99999974 6999999999999999999999999999999999999999999999999988887776666666666665
Q ss_pred HH
Q 039378 549 RE 550 (600)
Q Consensus 549 ~~ 550 (600)
.+
T Consensus 616 ~~ 617 (956)
T PRK04914 616 HE 617 (956)
T ss_pred hh
Confidence 54
No 81
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.1e-33 Score=311.26 Aligned_cols=304 Identities=19% Similarity=0.266 Sum_probs=214.1
Q ss_pred HHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc-CCCCceE
Q 039378 207 HAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG-KPCGVKS 285 (600)
Q Consensus 207 ~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~-~~~~~~~ 285 (600)
+.+..+.+++.+|++|+||||||. ++|.+....... ...++++..|.|-.|..+...+.... ...|-.+
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~--------~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~V 143 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRG--------SHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKV 143 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCC--------CCceEecCCccHHHHHHHHHHHHHHhCCCcceEE
Confidence 344555566678899999999999 577665432211 12346677899998888887776643 2333333
Q ss_pred EEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccc-hhhcCCChHH-HHHHHHhcCcCCcEE
Q 039378 286 VCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEAD-RMLDMGFEEP-VRFILSKISLARQMV 363 (600)
Q Consensus 286 ~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah-~l~~~~~~~~-~~~il~~~~~~~q~i 363 (600)
.+.+...+.. ..+..|+|+|+|+|++.+..+. .+..+++||||||| ++++.++... +..++.. ....|+|
T Consensus 144 GY~vR~~~~~------s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlI 215 (1283)
T TIGR01967 144 GYKVRFHDQV------SSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKII 215 (1283)
T ss_pred eeEEcCCccc------CCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEE
Confidence 3322222221 2347899999999999887655 48999999999999 5888776543 4445433 3467899
Q ss_pred EEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecC------cchHHHHHHHHHHHhhcCCCeEEEEEe
Q 039378 364 MFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDD------RSRDQRLLALLEKYHKSQRNRVLVFAL 437 (600)
Q Consensus 364 ~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~~~~~~~~lVF~~ 437 (600)
+||||++. ..+.. ++...|+ +.+..... .+..++..... ......+...+..+.....+.+|||++
T Consensus 216 lmSATld~--~~fa~-~F~~apv-I~V~Gr~~----PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLp 287 (1283)
T TIGR01967 216 ITSATIDP--ERFSR-HFNNAPI-IEVSGRTY----PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLP 287 (1283)
T ss_pred EEeCCcCH--HHHHH-HhcCCCE-EEECCCcc----cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCC
Confidence 99999974 34444 4434454 44433222 12222222211 122334444555444445689999999
Q ss_pred ehhcHHHHHHHHHhCC---CeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCC-------
Q 039378 438 YQLEADRLENMLRRSG---WKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP------- 507 (600)
Q Consensus 438 s~~~~~~l~~~L~~~~---~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p------- 507 (600)
+..++..++..|...+ +.+..+||+|++.+|.++++.+ +..+|||||+++++|||||+|++||+++++
T Consensus 288 g~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~ 365 (1283)
T TIGR01967 288 GEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSY 365 (1283)
T ss_pred CHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccc
Confidence 9999999999998764 4689999999999999997654 346899999999999999999999999843
Q ss_pred -----------CChhhHHHHhhhccCCCCccEEEEEEcCCcHh
Q 039378 508 -----------LTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539 (600)
Q Consensus 508 -----------~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~ 539 (600)
.|.++|.||.|||||.| +|.||.+|+..+..
T Consensus 366 ~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 366 RTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred ccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 36689999999999998 99999999987653
No 82
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.2e-30 Score=280.62 Aligned_cols=330 Identities=20% Similarity=0.251 Sum_probs=239.1
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+++|..+--.+..|+ |+.++||+|||++|.+|++..++... .|+||+||++||.|.++++..+..
T Consensus 82 ~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~-----------~V~VvTpn~yLA~qd~e~m~~l~~ 148 (896)
T PRK13104 82 RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGR-----------GVHIVTVNDYLAKRDSQWMKPIYE 148 (896)
T ss_pred CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCC-----------CEEEEcCCHHHHHHHHHHHHHHhc
Confidence 67888988888777765 88999999999999999998876532 279999999999999999999999
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHH-HHHHHccC-CCc-----cceEEEEEcccchhhcC---------
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL-IDLIEMNV-CHL-----SEVSFVVLDEADRMLDM--------- 343 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~-~~l-----~~~~~lViDEah~l~~~--------- 343 (600)
.+|+.+.+++||.+........ .++|+++||++| .++++.+. +.+ ..+.++||||||.|+-.
T Consensus 149 ~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIIS 226 (896)
T PRK13104 149 FLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIIS 226 (896)
T ss_pred ccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeee
Confidence 9999999999998876654444 589999999999 88887662 333 58999999999987510
Q ss_pred C-------ChHHHHHHHHhcCcC---------------------------------------------------------
Q 039378 344 G-------FEEPVRFILSKISLA--------------------------------------------------------- 359 (600)
Q Consensus 344 ~-------~~~~~~~il~~~~~~--------------------------------------------------------- 359 (600)
| ....+..+...+...
T Consensus 227 g~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~ 306 (896)
T PRK13104 227 GAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVN 306 (896)
T ss_pred CCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHH
Confidence 0 000111111111000
Q ss_pred -------------------------------------------------------------------------CcEEEEe
Q 039378 360 -------------------------------------------------------------------------RQMVMFS 366 (600)
Q Consensus 360 -------------------------------------------------------------------------~q~i~~S 366 (600)
.++.+||
T Consensus 307 ~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMT 386 (896)
T PRK13104 307 AALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMT 386 (896)
T ss_pred HHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCC
Confidence 1234444
Q ss_pred ccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHH
Q 039378 367 ATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLE 446 (600)
Q Consensus 367 ATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~ 446 (600)
+|......++...|- -.++.+............ -..+.....+...+...+..+.. .+.|+||||+|+..++.|+
T Consensus 387 GTa~te~~Ef~~iY~---l~Vv~IPtnkp~~R~d~~-d~v~~t~~~k~~av~~~i~~~~~-~g~PVLVgt~Sie~sE~ls 461 (896)
T PRK13104 387 GTADTEAYEFQQIYN---LEVVVIPTNRSMIRKDEA-DLVYLTQADKFQAIIEDVRECGV-RKQPVLVGTVSIEASEFLS 461 (896)
T ss_pred CCChhHHHHHHHHhC---CCEEECCCCCCcceecCC-CeEEcCHHHHHHHHHHHHHHHHh-CCCCEEEEeCcHHHHHHHH
Confidence 444333333322221 111111111111111111 11222344566666666655443 4789999999999999999
Q ss_pred HHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCC-----------------------------
Q 039378 447 NMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD----------------------------- 497 (600)
Q Consensus 447 ~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~----------------------------- 497 (600)
.+|...|+++..||+.+.+.+|..+.+.|+.|. |+|||++++||+||.=
T Consensus 462 ~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (896)
T PRK13104 462 QLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQK 539 (896)
T ss_pred HHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhh
Confidence 999999999999999999999999999999995 9999999999999951
Q ss_pred ---------cCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHH----HHHHHHHHHh
Q 039378 498 ---------VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALA----GELVNVLREA 551 (600)
Q Consensus 498 ---------v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~----~~i~~~l~~~ 551 (600)
==|||-...+.|..--.|-.||+||-|.+|.+..|++-+|.-+- ..+..++...
T Consensus 540 ~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~~~f~~~~~~~~~~~~ 606 (896)
T PRK13104 540 RHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASERVASMMRRL 606 (896)
T ss_pred hhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHHhChHHHHHHHHHc
Confidence 12688888899999999999999999999999999999886543 4455555544
No 83
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.98 E-value=2.5e-31 Score=294.89 Aligned_cols=320 Identities=18% Similarity=0.255 Sum_probs=215.3
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHH
Q 039378 200 NPSPIQSHAWPFLL----NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN 275 (600)
Q Consensus 200 ~~~~~Q~~~i~~il----~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~ 275 (600)
.+.|+|.+++.|++ +|.++|++.+||.|||++. +.++.++..... ....+|||||. .+..||.++|.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~~-------~~gp~LIVvP~-SlL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYRG-------ITGPHMVVAPK-STLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhcC-------CCCCEEEEeCh-HHHHHHHHHHH
Confidence 68899999999986 5678999999999999973 444555443221 12236999997 67799999999
Q ss_pred HhcCCCCceEEEEeCCCChHHHHHH---HhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHH
Q 039378 276 DAGKPCGVKSVCVYGGTSKQPQITA---LRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFI 352 (600)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~---l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~i 352 (600)
+++.. +.++.++|.......... ....++|+|+||+.+..... .+.--.|++|||||||++.+. ...+..+
T Consensus 240 kw~p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklska 313 (1033)
T PLN03142 240 RFCPV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKT 313 (1033)
T ss_pred HHCCC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHH
Confidence 99854 555666665433222211 12358999999999876432 223346899999999999874 3444555
Q ss_pred HHhcCcCCcEEEEeccCCh-hHHHHHHH--hcC-----------------------------------------------
Q 039378 353 LSKISLARQMVMFSATWPI-EVHKLAEE--YMD----------------------------------------------- 382 (600)
Q Consensus 353 l~~~~~~~q~i~~SATl~~-~~~~~~~~--~~~----------------------------------------------- 382 (600)
+..+. ....+++|||+-. .+..+... |+.
T Consensus 314 lr~L~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~ 392 (1033)
T PLN03142 314 MRLFS-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK 392 (1033)
T ss_pred HHHhh-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence 55554 3457899999521 11111000 000
Q ss_pred --CCCe--EEEECCcc--cccC---------------------CCeeEE---------E-------------EEecCcch
Q 039378 383 --PNPV--KVVVGSED--LAAN---------------------HDVMQI---------V-------------EVLDDRSR 413 (600)
Q Consensus 383 --~~~~--~i~~~~~~--~~~~---------------------~~~~~~---------~-------------~~~~~~~~ 413 (600)
+... .+.+.... ...+ ..+.+. + .......+
T Consensus 393 ~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgK 472 (1033)
T PLN03142 393 GLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGK 472 (1033)
T ss_pred hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhH
Confidence 0000 00010000 0000 000000 0 00001123
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC---CCCEEEeccccc
Q 039378 414 DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEG---TCPLMVATDVAA 490 (600)
Q Consensus 414 ~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g---~~~vLvaT~~~~ 490 (600)
...+..++..+. ..+.++|||++...+++.|..+|...++.++.+||+++..+|..+++.|+.. .+.+|++|.+++
T Consensus 473 l~lLdkLL~~Lk-~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGG 551 (1033)
T PLN03142 473 MVLLDKLLPKLK-ERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG 551 (1033)
T ss_pred HHHHHHHHHHHH-hcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 333344444433 3467999999999999999999999999999999999999999999999753 346899999999
Q ss_pred cCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEE--EEcCC
Q 039378 491 RGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHT--FFTNH 536 (600)
Q Consensus 491 ~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~--~~~~~ 536 (600)
.|||+..+++||+||+||||..+.|++||++|.||...|.+ |++.+
T Consensus 552 lGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 552 LGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred cCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 99999999999999999999999999999999999876544 44544
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.98 E-value=1.1e-29 Score=277.83 Aligned_cols=314 Identities=19% Similarity=0.223 Sum_probs=214.6
Q ss_pred CCcHHHHHHhhhhhcC---CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 200 NPSPIQSHAWPFLLNG---RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~---~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
.+++.|.+++..+.++ +++++.|+||||||.+|+.++...+.. +.++||++|+++|+.|+.+.+.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----------g~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----------GKQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHHHHHHHH
Confidence 5889999999999874 689999999999999998776554432 33589999999999999999988
Q ss_pred hcCCCCceEEEEeCCCChHHHHH---HHh-cCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCC------h
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQIT---ALR-SGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGF------E 346 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~---~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~------~ 346 (600)
.. +..+..++|+.+...... .+. ..++|||+|++.+. ..+.++++|||||+|....+.. .
T Consensus 213 ~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 213 RF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred Hh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcH
Confidence 54 467888888877654432 233 34899999998763 3578899999999997654321 1
Q ss_pred HHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEec---C---cchHHHHHHH
Q 039378 347 EPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD---D---RSRDQRLLAL 420 (600)
Q Consensus 347 ~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~l~~~ 420 (600)
..+ .++.....+.+++++|||++......+.. .....+..................... . ..-...++..
T Consensus 283 r~v-a~~ra~~~~~~~il~SATps~~s~~~~~~---g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~ 358 (679)
T PRK05580 283 RDL-AVVRAKLENIPVVLGSATPSLESLANAQQ---GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEA 358 (679)
T ss_pred HHH-HHHHhhccCCCEEEEcCCCCHHHHHHHhc---cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHH
Confidence 122 22333456789999999987555443321 111122221111001011111111100 0 0011233343
Q ss_pred HHHHhhcCCCeEEEEEeeh------------------------------------------------------------h
Q 039378 421 LEKYHKSQRNRVLVFALYQ------------------------------------------------------------L 440 (600)
Q Consensus 421 l~~~~~~~~~~~lVF~~s~------------------------------------------------------------~ 440 (600)
+.... ..+.++|||+|.+ .
T Consensus 359 i~~~l-~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~ 437 (679)
T PRK05580 359 IKQRL-ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGP 437 (679)
T ss_pred HHHHH-HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeec
Confidence 43332 2355788887742 1
Q ss_pred cHHHHHHHHHhC--CCeEEEEcCCCCH--HHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEc--CCCCCh----
Q 039378 441 EADRLENMLRRS--GWKVVAIHGKKAQ--HERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINY--SFPLTT---- 510 (600)
Q Consensus 441 ~~~~l~~~L~~~--~~~~~~l~~~~~~--~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~--d~p~s~---- 510 (600)
.++++++.|... +.++..+|+++.+ .+++.+++.|++|+..|||+|+++++|+|+|++++|+.+ |.+.+.
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 445777778775 7789999999874 578999999999999999999999999999999998655 444332
Q ss_pred ------hhHHHHhhhccCCCCccEEEEEEcCCcHh
Q 039378 511 ------EDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539 (600)
Q Consensus 511 ------~~y~qr~GR~gR~g~~g~~~~~~~~~d~~ 539 (600)
..|+|++||+||.+..|.++......+..
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~ 552 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHP 552 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCH
Confidence 56899999999999999999776554433
No 85
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2.4e-30 Score=276.66 Aligned_cols=347 Identities=19% Similarity=0.243 Sum_probs=252.2
Q ss_pred CCCCHHHHHhhcCCCCCcHHHHHHhhhhhcCC-cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEccc
Q 039378 185 SKLPDDVLGCCKNFKNPSPIQSHAWPFLLNGR-DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPT 263 (600)
Q Consensus 185 ~~l~~~l~~~~~~~~~~~~~Q~~~i~~il~~~-d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Pt 263 (600)
..+|.+-..++.|+..+.++|.......+.+. ++++|||||+|||..+++-+++.+-.+......-+....++.+++|.
T Consensus 294 selP~Wnq~aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 294 SELPKWNQPAFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred cCCcchhhhhcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 35666777788889999999999999999885 89999999999999999999988876644222222334578999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccC---CCccceEEEEEcccchh
Q 039378 264 RELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNV---CHLSEVSFVVLDEADRM 340 (600)
Q Consensus 264 r~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~---~~l~~~~~lViDEah~l 340 (600)
++|++.|...|.+....+|+++.-++|......+. ..+.+|+||||+.+ +.+.++. ...+-++++|+||.|.+
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999986643221 12379999999997 4444332 12345789999999977
Q ss_pred hcCCChHHHHHHHHhcC-------cCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcch
Q 039378 341 LDMGFEEPVRFILSKIS-------LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSR 413 (600)
Q Consensus 341 ~~~~~~~~~~~il~~~~-------~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (600)
.+. .++.++.|..+.. ..++++++|||+|+... +..|+..++.-+.......+ +..+.+.+..+.....
T Consensus 450 hDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~D--V~~Fl~v~~~glf~fd~syR-pvPL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 450 HDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYED--VASFLRVDPEGLFYFDSSYR-PVPLKQQYIGITEKKP 525 (1674)
T ss_pred ccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhh--hHHHhccCcccccccCcccC-cCCccceEeccccCCc
Confidence 664 6777877765543 34689999999998654 44555444433333333332 3334444444443333
Q ss_pred HHH---HHHHH-HHHh-hcCCCeEEEEEeehhcHHHHHHHHHh-------------------------------------
Q 039378 414 DQR---LLALL-EKYH-KSQRNRVLVFALYQLEADRLENMLRR------------------------------------- 451 (600)
Q Consensus 414 ~~~---l~~~l-~~~~-~~~~~~~lVF~~s~~~~~~l~~~L~~------------------------------------- 451 (600)
... +.+.+ ..+. ....+++|||++|++++...++.++.
T Consensus 526 ~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdL 605 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDL 605 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHH
Confidence 322 22222 1221 23457999999999999888777652
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEE----EcCC------CCChhhHHHHhhhcc
Q 039378 452 SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVI----NYSF------PLTTEDYVHRIGRTG 521 (600)
Q Consensus 452 ~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI----~~d~------p~s~~~y~qr~GR~g 521 (600)
+.+.++.+|+||+..+|..+.+.|+.|.++|||+|..+++|+|+|+-.++| .||+ +.+|.+..||.||+|
T Consensus 606 LpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgrag 685 (1674)
T KOG0951|consen 606 LPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAG 685 (1674)
T ss_pred hhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcC
Confidence 125689999999999999999999999999999999999999999887777 3654 568999999999999
Q ss_pred CCCC--ccEEEEEEcCCcHh
Q 039378 522 RAGK--KGVSHTFFTNHNKA 539 (600)
Q Consensus 522 R~g~--~g~~~~~~~~~d~~ 539 (600)
|.+- .|..++.-...+..
T Consensus 686 rp~~D~~gegiiit~~se~q 705 (1674)
T KOG0951|consen 686 RPQYDTCGEGIIITDHSELQ 705 (1674)
T ss_pred CCccCcCCceeeccCchHhh
Confidence 9764 35555544444433
No 86
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=2.3e-29 Score=276.93 Aligned_cols=314 Identities=18% Similarity=0.192 Sum_probs=200.5
Q ss_pred CCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 198 ~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
...|+|+|..+........-+|+.||||+|||.++++.+. .+..... ..+++|.+||++++.|+++++.++
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~-~l~~~~~--------~~gi~~aLPT~Atan~m~~Rl~~~ 354 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAW-RLIDQGL--------ADSIIFALPTQATANAMLSRLEAL 354 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHH-HHHHhCC--------CCeEEEECcHHHHHHHHHHHHHHH
Confidence 4489999998865544455689999999999999766543 4443221 234799999999999999998864
Q ss_pred cCC--CCceEEEEeCCCChHHHH---------------------HHHh---c---CCcEEEEchHHHHHHHHc-cCCCcc
Q 039378 278 GKP--CGVKSVCVYGGTSKQPQI---------------------TALR---S---GVDIVIGTPGRLIDLIEM-NVCHLS 327 (600)
Q Consensus 278 ~~~--~~~~~~~~~~g~~~~~~~---------------------~~l~---~---~~~Iiv~Tp~~l~~~l~~-~~~~l~ 327 (600)
... ....+.+.+|........ .-+. + -.+|+|||+..++..+-. ....+.
T Consensus 355 ~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR 434 (878)
T PRK09694 355 ASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIR 434 (878)
T ss_pred HHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHH
Confidence 321 123455555544321110 0011 1 169999999998864432 222233
Q ss_pred ce----EEEEEcccchhhcCCChHHHHHHHHhc-CcCCcEEEEeccCChhHHHHHHHhcCCC---------CeEEEECCc
Q 039378 328 EV----SFVVLDEADRMLDMGFEEPVRFILSKI-SLARQMVMFSATWPIEVHKLAEEYMDPN---------PVKVVVGSE 393 (600)
Q Consensus 328 ~~----~~lViDEah~l~~~~~~~~~~~il~~~-~~~~q~i~~SATl~~~~~~~~~~~~~~~---------~~~i~~~~~ 393 (600)
.+ ++|||||+|.+-.. ....+..++..+ .....+|+||||+|..........+... |........
T Consensus 435 ~~~La~svvIiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~ 513 (878)
T PRK09694 435 GFGLGRSVLIVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVN 513 (878)
T ss_pred HHhhccCeEEEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccc
Confidence 33 58999999987432 333444455443 2356799999999988765433322111 111000000
Q ss_pred ---cc--ccC---CCeeEEEEE--e--cCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCC---CeEEE
Q 039378 394 ---DL--AAN---HDVMQIVEV--L--DDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSG---WKVVA 458 (600)
Q Consensus 394 ---~~--~~~---~~~~~~~~~--~--~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---~~~~~ 458 (600)
.. ... ......+.. . ........++..+.... ..++++|||||++..+..+++.|+..+ ..+..
T Consensus 514 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~-~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~l 592 (878)
T PRK09694 514 GAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA-NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDL 592 (878)
T ss_pred cceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEE
Confidence 00 000 000111111 1 11111223333332221 236799999999999999999998764 67999
Q ss_pred EcCCCCHHHH----HHHHHHH-hcCC---CCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCC
Q 039378 459 IHGKKAQHER----TKSLSLF-KEGT---CPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGK 525 (600)
Q Consensus 459 l~~~~~~~~r----~~~~~~F-~~g~---~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~ 525 (600)
+||.++..+| .++++.| ++|+ ..|||||+++++|||| +++++|....| .+.++||+||+||.++
T Consensus 593 lHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 593 FHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999999999 4677788 5665 3699999999999999 68999998888 5799999999999875
No 87
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=7e-30 Score=274.76 Aligned_cols=319 Identities=21% Similarity=0.246 Sum_probs=239.4
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+++|..+.-.+..|+ |+.+.||+|||+++.+|++...+... .+-||+||..||.|.++.+..+..
T Consensus 81 ~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~-----------~V~IvTpn~yLA~rd~e~~~~l~~ 147 (830)
T PRK12904 81 RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGK-----------GVHVVTVNDYLAKRDAEWMGPLYE 147 (830)
T ss_pred CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCC-----------CEEEEecCHHHHHHHHHHHHHHHh
Confidence 68899999888887775 89999999999999999976555432 267999999999999999999999
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHH-HHHHHccC------CCccceEEEEEcccchhhcCC--------
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL-IDLIEMNV------CHLSEVSFVVLDEADRMLDMG-------- 344 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~------~~l~~~~~lViDEah~l~~~~-------- 344 (600)
.+|+++.++.|+.+...+.... .++|+++||++| .++++.+. ..+..+.++||||||.|+=..
T Consensus 148 ~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiS 225 (830)
T PRK12904 148 FLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIIS 225 (830)
T ss_pred hcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeE
Confidence 9999999999998877665554 389999999999 88887654 236789999999999875100
Q ss_pred --------ChHHHHHHHHhcCcC---------------------------------------------------------
Q 039378 345 --------FEEPVRFILSKISLA--------------------------------------------------------- 359 (600)
Q Consensus 345 --------~~~~~~~il~~~~~~--------------------------------------------------------- 359 (600)
....+..+...+...
T Consensus 226 g~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~ 305 (830)
T PRK12904 226 GPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDV 305 (830)
T ss_pred CCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCC
Confidence 001111111111100
Q ss_pred ------------------------------------------------------------CcEEEEeccCChhHHHHHHH
Q 039378 360 ------------------------------------------------------------RQMVMFSATWPIEVHKLAEE 379 (600)
Q Consensus 360 ------------------------------------------------------------~q~i~~SATl~~~~~~~~~~ 379 (600)
..+.+||+|.......+...
T Consensus 306 dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i 385 (830)
T PRK12904 306 DYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREI 385 (830)
T ss_pred cEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHH
Confidence 24567777776554444433
Q ss_pred hcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEE
Q 039378 380 YMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAI 459 (600)
Q Consensus 380 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l 459 (600)
|- -.++.+.+.......... -........+...+...+..... .+.++||||+|+..++.|+..|...|+++..+
T Consensus 386 Y~---l~vv~IPtnkp~~r~d~~-d~i~~t~~~K~~aI~~~I~~~~~-~grpVLIft~Si~~se~Ls~~L~~~gi~~~vL 460 (830)
T PRK12904 386 YN---LDVVVIPTNRPMIRIDHP-DLIYKTEKEKFDAVVEDIKERHK-KGQPVLVGTVSIEKSELLSKLLKKAGIPHNVL 460 (830)
T ss_pred hC---CCEEEcCCCCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHCCCceEec
Confidence 32 122222222111111111 11223444566677777765443 46799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCc--------------------------------------CEE
Q 039378 460 HGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDV--------------------------------------EVV 501 (600)
Q Consensus 460 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v--------------------------------------~~V 501 (600)
||. +.+|...+..|+.+...|+|||++++||+||+=- =||
T Consensus 461 nak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhV 538 (830)
T PRK12904 461 NAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHV 538 (830)
T ss_pred cCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEE
Confidence 995 7899999999999999999999999999999632 268
Q ss_pred EEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhH
Q 039378 502 INYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKAL 540 (600)
Q Consensus 502 I~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~ 540 (600)
|-...|.|..--.|-.||+||.|.+|.+..|++-+|.-+
T Consensus 539 igTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 539 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred EecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 888899999999999999999999999999999988654
No 88
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.97 E-value=3.2e-30 Score=264.34 Aligned_cols=322 Identities=20% Similarity=0.291 Sum_probs=224.5
Q ss_pred CCCcHHHHHHhhhhh----cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHH
Q 039378 199 KNPSPIQSHAWPFLL----NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il----~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~ 274 (600)
..++++|.++++|+. +|-++|++.+||.|||++ .|.++.++..... ..|| -||+||...| ..|.++|
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~------~~GP-fLVi~P~StL-~NW~~Ef 236 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG------IPGP-FLVIAPKSTL-DNWMNEF 236 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcC------CCCC-eEEEeeHhhH-HHHHHHH
Confidence 468899999999977 567899999999999998 5666666655322 1233 3899999777 7899999
Q ss_pred HHhcCCCCceEEEEeCCCChHHHHHH---HhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHH
Q 039378 275 NDAGKPCGVKSVCVYGGTSKQPQITA---LRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRF 351 (600)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~---l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~ 351 (600)
.+|++. +++++++|....+..... .....+|+||||+..+.- +..+.--.|+||||||||++.+. ...+..
T Consensus 237 ~rf~P~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~--~s~L~~ 310 (971)
T KOG0385|consen 237 KRFTPS--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNE--KSKLSK 310 (971)
T ss_pred HHhCCC--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcch--hhHHHH
Confidence 999864 777888887654433221 223689999999988664 22333457899999999999985 355567
Q ss_pred HHHhcCcCCcEEEEeccCC-hhHHHH----------------------------------------------------HH
Q 039378 352 ILSKISLARQMVMFSATWP-IEVHKL----------------------------------------------------AE 378 (600)
Q Consensus 352 il~~~~~~~q~i~~SATl~-~~~~~~----------------------------------------------------~~ 378 (600)
+++.+.... .+++|+|+- ..+.++ +.
T Consensus 311 ~lr~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe 389 (971)
T KOG0385|consen 311 ILREFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVE 389 (971)
T ss_pred HHHHhcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHh
Confidence 777776544 677777721 111100 00
Q ss_pred HhcC-CCCeEEEECCcc-------------c------------ccCCCeeEEEEE----------------------ecC
Q 039378 379 EYMD-PNPVKVVVGSED-------------L------------AANHDVMQIVEV----------------------LDD 410 (600)
Q Consensus 379 ~~~~-~~~~~i~~~~~~-------------~------------~~~~~~~~~~~~----------------------~~~ 410 (600)
..+- ...+.+.++-.. + ...+..+|...+ +..
T Consensus 390 ~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~n 469 (971)
T KOG0385|consen 390 KSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTN 469 (971)
T ss_pred hcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhc
Confidence 0000 000111111000 0 000000000000 112
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC---CCCEEEecc
Q 039378 411 RSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEG---TCPLMVATD 487 (600)
Q Consensus 411 ~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g---~~~vLvaT~ 487 (600)
..+...|-.+|..+. ..+++||||.+...+++.|..++.-+++.++.+.|.++.++|...++.|+.. .+-+|++|.
T Consensus 470 SGKm~vLDkLL~~Lk-~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLK-EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred CcceehHHHHHHHHH-hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 233344444554443 3588999999999999999999999999999999999999999999999864 456899999
Q ss_pred ccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEE--EEEEcCCc
Q 039378 488 VAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS--HTFFTNHN 537 (600)
Q Consensus 488 ~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~--~~~~~~~d 537 (600)
+++.|||+..+++||.||..|||..-+|.+.||+|+||...+ +.|++.+.
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 999999999999999999999999999999999999997655 45555553
No 89
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=8.9e-30 Score=265.82 Aligned_cols=296 Identities=24% Similarity=0.303 Sum_probs=201.8
Q ss_pred CCCCcHHHHHHhhhhhc----CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHH
Q 039378 198 FKNPSPIQSHAWPFLLN----GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDV 273 (600)
Q Consensus 198 ~~~~~~~Q~~~i~~il~----~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~ 273 (600)
...|+++|.+++..+.+ .+.+++++|||+|||.+++. ++..+.. .+||||||++|+.||.+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~-~~~~~~~-------------~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAE-AIAELKR-------------STLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHH-HHHHhcC-------------CEEEEECcHHHHHHHHHH
Confidence 34689999999999998 78899999999999997543 3333221 279999999999999987
Q ss_pred HHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHH
Q 039378 274 LNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFIL 353 (600)
Q Consensus 274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il 353 (600)
+....... ..+..+||...... . ..|.|+|+..+........+....+.+||+||||++....+ ..+.
T Consensus 100 ~~~~~~~~--~~~g~~~~~~~~~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~----~~~~ 167 (442)
T COG1061 100 LKKFLLLN--DEIGIYGGGEKELE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY----RRIL 167 (442)
T ss_pred HHHhcCCc--cccceecCceeccC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH----HHHH
Confidence 77765432 12233444332211 0 36999999998774211122344799999999999876543 3344
Q ss_pred HhcCcCCcEEEEeccCChhH-HHHHHHhcCCCCeEEEECCcccccC---CCeeEEEEEe--cC-----------------
Q 039378 354 SKISLARQMVMFSATWPIEV-HKLAEEYMDPNPVKVVVGSEDLAAN---HDVMQIVEVL--DD----------------- 410 (600)
Q Consensus 354 ~~~~~~~q~i~~SATl~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~--~~----------------- 410 (600)
..+.....+++||||++... ......+....+............. .....+.... ..
T Consensus 168 ~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~ 247 (442)
T COG1061 168 ELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELL 247 (442)
T ss_pred HhhhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhh
Confidence 44433333999999977443 1222211112233333322111110 0111111111 00
Q ss_pred -------------------cchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHH
Q 039378 411 -------------------RSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKS 471 (600)
Q Consensus 411 -------------------~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~ 471 (600)
..+...+..++.... .+.++||||.+..++..++..|...++ +..+++.++..+|..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~i 324 (442)
T COG1061 248 RARGTLRAENEARRIAIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAI 324 (442)
T ss_pred hhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHH
Confidence 000011111111111 356999999999999999999998887 8999999999999999
Q ss_pred HHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccC
Q 039378 472 LSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGR 522 (600)
Q Consensus 472 ~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR 522 (600)
++.|+.|.+.+||++.++..|+|+|+++++|...+..|+..|+||+||.-|
T Consensus 325 l~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 325 LERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999999999
No 90
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2.2e-29 Score=263.25 Aligned_cols=313 Identities=19% Similarity=0.249 Sum_probs=234.4
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
+|-++|++||.++..|..|+|+|+|.+|||+++-.++...-.+ +.++++.+|-++|..|-++.|+....
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h-----------~TR~iYTSPIKALSNQKfRDFk~tF~ 365 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH-----------MTRTIYTSPIKALSNQKFRDFKETFG 365 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh-----------ccceEecchhhhhccchHHHHHHhcc
Confidence 6889999999999999999999999999999865554333222 34479999999999999999998765
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcC
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA 359 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~ 359 (600)
..| +++|+...... +.++|+|.+.|..++.++..-++++.+|||||+|.+.+...+-.++.++-.+|..
T Consensus 366 Dvg----LlTGDvqinPe-------AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~H 434 (1248)
T KOG0947|consen 366 DVG----LLTGDVQINPE-------ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRH 434 (1248)
T ss_pred ccc----eeecceeeCCC-------cceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeecccc
Confidence 433 67777654433 7899999999999999988889999999999999999988888899999999999
Q ss_pred CcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEec------------------------------
Q 039378 360 RQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD------------------------------ 409 (600)
Q Consensus 360 ~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------------------------------ 409 (600)
.++|++|||.|+..+ ++.+......-.+.+.... ..+..+.++...-.
T Consensus 435 V~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~-kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~ 512 (1248)
T KOG0947|consen 435 VNFILLSATVPNTLE-FADWIGRTKQKTIYVISTS-KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKF 512 (1248)
T ss_pred ceEEEEeccCCChHH-HHHHhhhccCceEEEEecC-CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccc
Confidence 999999999997654 3332221111111111100 00000111100000
Q ss_pred -------------------------C----------cchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCC
Q 039378 410 -------------------------D----------RSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGW 454 (600)
Q Consensus 410 -------------------------~----------~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~ 454 (600)
. ..+....+.++..+.+..--+++|||-|++.|+..+.+|...++
T Consensus 513 ~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL 592 (1248)
T KOG0947|consen 513 VDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNL 592 (1248)
T ss_pred cccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCc
Confidence 0 00112466677777666667999999999999999999875432
Q ss_pred ---------------------------------------eEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCC
Q 039378 455 ---------------------------------------KVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495 (600)
Q Consensus 455 ---------------------------------------~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi 495 (600)
.++++||++-+--..-+.-.|..|-++||+||.++++|+|.
T Consensus 593 ~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNM 672 (1248)
T KOG0947|consen 593 TDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNM 672 (1248)
T ss_pred ccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCC
Confidence 27899999999999999999999999999999999999999
Q ss_pred CCcCEEEEc----C----CCCChhhHHHHhhhccCCCC--ccEEEEEEcCC
Q 039378 496 PDVEVVINY----S----FPLTTEDYVHRIGRTGRAGK--KGVSHTFFTNH 536 (600)
Q Consensus 496 ~~v~~VI~~----d----~p~s~~~y~qr~GR~gR~g~--~g~~~~~~~~~ 536 (600)
|.-.+|+.- | .-..|-.|.|++|||||.|- +|.++++....
T Consensus 673 PARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 673 PARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred CceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 976666631 1 12357799999999999885 57777766544
No 91
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=4.7e-29 Score=235.96 Aligned_cols=200 Identities=49% Similarity=0.761 Sum_probs=177.6
Q ss_pred cccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEE
Q 039378 182 FTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLV 259 (600)
Q Consensus 182 ~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~li 259 (600)
|+++++++.+++.+. |+..|+++|.++++.+++++++++++|||+|||++|++|++.++..... ..+++++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~------~~~~~vii 74 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK------KDGPQALI 74 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc------cCCceEEE
Confidence 577899999998887 8999999999999999999999999999999999999999998877631 23677999
Q ss_pred EcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccch
Q 039378 260 LSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADR 339 (600)
Q Consensus 260 v~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~ 339 (600)
++|+++|+.|+.+.+..+....++.+..++|+.........+..+++|+|+||+.|..++.+....+.+++++|+||+|.
T Consensus 75 i~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~ 154 (203)
T cd00268 75 LAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR 154 (203)
T ss_pred EcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH
Confidence 99999999999999999988778888999998887776666666799999999999999988778889999999999999
Q ss_pred hhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEE
Q 039378 340 MLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKV 388 (600)
Q Consensus 340 l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i 388 (600)
+.+.++...+..++..++..+|++++|||+++.+..+...++ .+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~-~~~~~~ 202 (203)
T cd00268 155 MLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFL-RNPVRI 202 (203)
T ss_pred hhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHC-CCCEEe
Confidence 998888999999999998899999999999999999888888 455543
No 92
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3e-29 Score=268.78 Aligned_cols=319 Identities=20% Similarity=0.232 Sum_probs=231.8
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+++|..+.-.+..|+ |+.+.||+|||+++.+|++...+.... |-|++||-.||.|-++.+..+..
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~-----------v~vvT~neyLA~Rd~e~~~~~~~ 146 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKG-----------VHVVTVNEYLSSRDATEMGELYR 146 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCC-----------eEEEeccHHHHHhhHHHHHHHHH
Confidence 68899999888887776 899999999999999998888777543 78999999999999999999999
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHH-HHHHcc------CCCccceEEEEEcccchhhcC---------
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI-DLIEMN------VCHLSEVSFVVLDEADRMLDM--------- 343 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~-~~l~~~------~~~l~~~~~lViDEah~l~~~--------- 343 (600)
.+|+++.++.++.......... .+||+++|...|- ++++.+ ......+.+.||||+|.++=.
T Consensus 147 ~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiis 224 (796)
T PRK12906 147 WLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIIS 224 (796)
T ss_pred hcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecC
Confidence 9999999998876655443333 4899999988773 344332 122456899999999976410
Q ss_pred C----C---hHHHHHHHHhcCc-------------C--------------------------------------------
Q 039378 344 G----F---EEPVRFILSKISL-------------A-------------------------------------------- 359 (600)
Q Consensus 344 ~----~---~~~~~~il~~~~~-------------~-------------------------------------------- 359 (600)
| . ...+..+...+.. .
T Consensus 225 g~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~A 304 (796)
T PRK12906 225 GQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQA 304 (796)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHH
Confidence 0 0 0011111111000 0
Q ss_pred -----------------------------------------------------------------------CcEEEEecc
Q 039378 360 -----------------------------------------------------------------------RQMVMFSAT 368 (600)
Q Consensus 360 -----------------------------------------------------------------------~q~i~~SAT 368 (600)
.++.+||+|
T Consensus 305 l~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGT 384 (796)
T PRK12906 305 LRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGT 384 (796)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCC
Confidence 235566666
Q ss_pred CChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHH
Q 039378 369 WPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENM 448 (600)
Q Consensus 369 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~ 448 (600)
.......+...|- -+ ++.+.+.......... -..+.....+...+...+..... .+.++||||+|+..++.|+..
T Consensus 385 a~~e~~Ef~~iY~--l~-vv~IPtnkp~~r~d~~-d~i~~t~~~K~~al~~~i~~~~~-~g~pvLI~t~si~~se~ls~~ 459 (796)
T PRK12906 385 AKTEEEEFREIYN--ME-VITIPTNRPVIRKDSP-DLLYPTLDSKFNAVVKEIKERHA-KGQPVLVGTVAIESSERLSHL 459 (796)
T ss_pred CHHHHHHHHHHhC--CC-EEEcCCCCCeeeeeCC-CeEEcCHHHHHHHHHHHHHHHHh-CCCCEEEEeCcHHHHHHHHHH
Confidence 6544333333222 11 2222222111111111 11122334456666666655433 478999999999999999999
Q ss_pred HHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCC---CcC-----EEEEcCCCCChhhHHHHhhhc
Q 039378 449 LRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP---DVE-----VVINYSFPLTTEDYVHRIGRT 520 (600)
Q Consensus 449 L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~---~v~-----~VI~~d~p~s~~~y~qr~GR~ 520 (600)
|...++++..+|+.+...++..+...++.|. |+|||++++||+||+ +|. |||+++.|.|...|.|+.|||
T Consensus 460 L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRt 537 (796)
T PRK12906 460 LDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRS 537 (796)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhh
Confidence 9999999999999999888888888887777 999999999999994 899 999999999999999999999
Q ss_pred cCCCCccEEEEEEcCCcHhH
Q 039378 521 GRAGKKGVSHTFFTNHNKAL 540 (600)
Q Consensus 521 gR~g~~g~~~~~~~~~d~~~ 540 (600)
||.|.+|.+..|++.+|.-+
T Consensus 538 GRqG~~G~s~~~~sleD~l~ 557 (796)
T PRK12906 538 GRQGDPGSSRFYLSLEDDLM 557 (796)
T ss_pred ccCCCCcceEEEEeccchHH
Confidence 99999999999999987644
No 93
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2.2e-28 Score=252.61 Aligned_cols=322 Identities=20% Similarity=0.301 Sum_probs=238.8
Q ss_pred CCcHHHHHHhhhhhcC------CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHH
Q 039378 200 NPSPIQSHAWPFLLNG------RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDV 273 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~------~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~ 273 (600)
++|..|++++..|... -+-+++|.-|||||+++++.++..+-. |.++..++||--||.|.++.
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-----------G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-----------GYQAALMAPTEILAEQHYES 330 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc-----------CCeeEEeccHHHHHHHHHHH
Confidence 6899999999998864 257999999999999988887776644 44589999999999999999
Q ss_pred HHHhcCCCCceEEEEeCCCChHHH---HHHHhcC-CcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHH
Q 039378 274 LNDAGKPCGVKSVCVYGGTSKQPQ---ITALRSG-VDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPV 349 (600)
Q Consensus 274 ~~~~~~~~~~~~~~~~~g~~~~~~---~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~ 349 (600)
+.++....++++..++|....... ...+.+| .+|||+|..-+ .+.+.+.++.++|+||=|| |+-.-
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVIiDEQHR-----FGV~Q 400 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVIIDEQHR-----FGVHQ 400 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEEEecccc-----ccHHH
Confidence 999999999999999987654433 3445555 99999996544 3456788999999999999 55544
Q ss_pred HHHHHhcCc-CCcEEEEeccCChhHHHHHHHhcC-CCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhc
Q 039378 350 RFILSKISL-ARQMVMFSATWPIEVHKLAEEYMD-PNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKS 427 (600)
Q Consensus 350 ~~il~~~~~-~~q~i~~SATl~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 427 (600)
+..+..... .+.+++||||+-|.. ++-..+. -+-..|..-+ .-...+.... ... .+...+++.+..-..
T Consensus 401 R~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDldvS~IdElP---~GRkpI~T~~--i~~-~~~~~v~e~i~~ei~- 471 (677)
T COG1200 401 RLALREKGEQNPHVLVMTATPIPRT--LALTAFGDLDVSIIDELP---PGRKPITTVV--IPH-ERRPEVYERIREEIA- 471 (677)
T ss_pred HHHHHHhCCCCCcEEEEeCCCchHH--HHHHHhccccchhhccCC---CCCCceEEEE--ecc-ccHHHHHHHHHHHHH-
Confidence 555555555 688999999965533 3333331 1111221111 1112222222 222 333444444433222
Q ss_pred CCCeEEEEEeehhcH--------HHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCC
Q 039378 428 QRNRVLVFALYQLEA--------DRLENMLRRS--GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD 497 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~--------~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~ 497 (600)
.+.++.+.|+-+++. ..++..|+.. ++++..+||.|++.+...++++|++|++.|||||.+.+.|||+|+
T Consensus 472 ~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPn 551 (677)
T COG1200 472 KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPN 551 (677)
T ss_pred cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCC
Confidence 478999999887655 4555666643 567999999999999999999999999999999999999999999
Q ss_pred cCEEEEcCCC-CChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHh
Q 039378 498 VEVVINYSFP-LTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREA 551 (600)
Q Consensus 498 v~~VI~~d~p-~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~ 551 (600)
+++.|+++.- ...++..|--||+||.+..+.|+.++.+......+.-..++++.
T Consensus 552 ATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t 606 (677)
T COG1200 552 ATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRET 606 (677)
T ss_pred CeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhc
Confidence 9999998864 47789999999999999999999999988755555555555544
No 94
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.7e-28 Score=261.96 Aligned_cols=132 Identities=19% Similarity=0.313 Sum_probs=117.6
Q ss_pred CCCCC---cHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHH
Q 039378 197 NFKNP---SPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDV 273 (600)
Q Consensus 197 ~~~~~---~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~ 273 (600)
||..| +|+|.++++.++.++++|+.++||+|||++|++|++..++... .++||+||++||.|..+.
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~-----------~v~IVTpTrELA~Qdae~ 154 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK-----------PVHLVTVNDYLAQRDCEW 154 (970)
T ss_pred cccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC-----------CeEEEeCCHHHHHHHHHH
Confidence 78888 9999999999999999999999999999999999998876532 178999999999999999
Q ss_pred HHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHH-HHHHHccCCCcc-------ceEEEEEcccchhh
Q 039378 274 LNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL-IDLIEMNVCHLS-------EVSFVVLDEADRML 341 (600)
Q Consensus 274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~~~l~-------~~~~lViDEah~l~ 341 (600)
+..+...+++++.+++||.+...+...+ +++|+|+||++| .++++.+.+.++ .+.++||||||.|+
T Consensus 155 m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 155 VGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 9999999999999999999988776555 489999999999 999987755554 46899999999986
No 95
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=1.7e-28 Score=253.07 Aligned_cols=321 Identities=19% Similarity=0.210 Sum_probs=218.3
Q ss_pred CCCcHHHHHHhhhhh----cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHH
Q 039378 199 KNPSPIQSHAWPFLL----NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il----~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~ 274 (600)
..++++|+.++.|+. ++...|+..+||.|||++ .+..|..+..... .-..+|||||. .++.||.++|
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k-------~~~paLIVCP~-Tii~qW~~E~ 274 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGK-------LTKPALIVCPA-TIIHQWMKEF 274 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhccc-------ccCceEEEccH-HHHHHHHHHH
Confidence 457799999999987 345789999999999996 3333444443321 11347999998 7889999999
Q ss_pred HHhcCCCCceEEEEeCCCChH--------HHH-----HHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhh
Q 039378 275 NDAGKPCGVKSVCVYGGTSKQ--------PQI-----TALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRML 341 (600)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~~--------~~~-----~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~ 341 (600)
..|+.. +++..+++..... ... +....+..|+|+|+..|.- ....+.-..|+++|+||+|++.
T Consensus 275 ~~w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 275 QTWWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIR 350 (923)
T ss_pred HHhCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCccccc
Confidence 999876 6666666654420 000 1112346899999988733 2233344578999999999998
Q ss_pred cCCChHHHHHHHHhcCcCCcEEEEeccCC---------------------------------------------------
Q 039378 342 DMGFEEPVRFILSKISLARQMVMFSATWP--------------------------------------------------- 370 (600)
Q Consensus 342 ~~~~~~~~~~il~~~~~~~q~i~~SATl~--------------------------------------------------- 370 (600)
+.+ ..+...+..++. .+.|++|+|+-
T Consensus 351 Npn--s~islackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~ayk 427 (923)
T KOG0387|consen 351 NPN--SKISLACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYK 427 (923)
T ss_pred CCc--cHHHHHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHH
Confidence 864 445555555543 45777888821
Q ss_pred ---------------------------------------hhHHHHHHHhcC---------CCCeEEEECCccc-ccCCCe
Q 039378 371 ---------------------------------------IEVHKLAEEYMD---------PNPVKVVVGSEDL-AANHDV 401 (600)
Q Consensus 371 ---------------------------------------~~~~~~~~~~~~---------~~~~~i~~~~~~~-~~~~~~ 401 (600)
+..+.+...|+. ..+..+ .+-..+ ..++..
T Consensus 428 ca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l-~Gi~iLrkICnHP 506 (923)
T KOG0387|consen 428 CAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCL-SGIDILRKICNHP 506 (923)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccce-echHHHHhhcCCc
Confidence 111111111110 000000 000000 000000
Q ss_pred eEEE-------------EEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHH-hCCCeEEEEcCCCCHHH
Q 039378 402 MQIV-------------EVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLR-RSGWKVVAIHGKKAQHE 467 (600)
Q Consensus 402 ~~~~-------------~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~-~~~~~~~~l~~~~~~~~ 467 (600)
..+. .......+...+..++..+.+ ++.++|+|.+++.+++.|...|. ..++.++.+.|.++...
T Consensus 507 dll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~k-qg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~ 585 (923)
T KOG0387|consen 507 DLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKK-QGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAAL 585 (923)
T ss_pred ccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhh-CCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 0000 001123456667777777765 46799999999999999999999 57999999999999999
Q ss_pred HHHHHHHHhcCCC--CEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEE--EEEEcCCc
Q 039378 468 RTKSLSLFKEGTC--PLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS--HTFFTNHN 537 (600)
Q Consensus 468 r~~~~~~F~~g~~--~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~--~~~~~~~d 537 (600)
|+.+++.|+++.. .+|++|.+.+-|+|+.+++.||+|||.|||..-.|...||.|.||+..+ |.|++...
T Consensus 586 R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 586 RQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred hhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCc
Confidence 9999999998753 4789999999999999999999999999999999999999999997654 55566553
No 96
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.4e-29 Score=259.92 Aligned_cols=310 Identities=21% Similarity=0.232 Sum_probs=226.2
Q ss_pred HHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCC--ce
Q 039378 207 HAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCG--VK 284 (600)
Q Consensus 207 ~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~--~~ 284 (600)
+++..|..+--+||||.||||||. ++|.+.+-...... ....+..+-|.-|+|..|..+.++.......++ +.
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~---~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVs 337 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASE---QSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVS 337 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCc---cCCCCCeeeecCchHHHHHHHHHHHHHHhccCcccee
Confidence 444555555568999999999999 57766554332211 111244678999999999888877665443344 33
Q ss_pred EEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhc-------C
Q 039378 285 SVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI-------S 357 (600)
Q Consensus 285 ~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~-------~ 357 (600)
..+-+.|.-.. ...|.++|.|.|++.+..+. .|..+++|||||||.-.- +.+.+-.++.++ .
T Consensus 338 YqIRfd~ti~e--------~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k~~ 406 (1172)
T KOG0926|consen 338 YQIRFDGTIGE--------DTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQKYY 406 (1172)
T ss_pred EEEEeccccCC--------CceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHHHh
Confidence 44444444322 25899999999999988654 589999999999997543 223333333322 2
Q ss_pred c------CCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCe
Q 039378 358 L------ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNR 431 (600)
Q Consensus 358 ~------~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 431 (600)
. ...+|+|||||......-.+.++...|..+.+....+.+ ..++........-..++.+.+..+.+.+.|.
T Consensus 407 ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPV---sIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ 483 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPV---SIHFNKRTPDDYIAEAFRKTCKIHKKLPPGG 483 (1172)
T ss_pred hhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCce---EEEeccCCCchHHHHHHHHHHHHhhcCCCCc
Confidence 2 236899999998665554556665667788877765543 3445555555556667777788777888999
Q ss_pred EEEEEeehhcHHHHHHHHHhCC----------------------------------------------------------
Q 039378 432 VLVFALYQLEADRLENMLRRSG---------------------------------------------------------- 453 (600)
Q Consensus 432 ~lVF~~s~~~~~~l~~~L~~~~---------------------------------------------------------- 453 (600)
+|||+..+++++.|+..|++.-
T Consensus 484 ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~ 563 (1172)
T KOG0926|consen 484 ILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFAS 563 (1172)
T ss_pred EEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchh
Confidence 9999999999999999997541
Q ss_pred -----------------------------------------CeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccC
Q 039378 454 -----------------------------------------WKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARG 492 (600)
Q Consensus 454 -----------------------------------------~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~G 492 (600)
.-|++|++-++..++.++++.-..|..-++|||++++..
T Consensus 564 ~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETS 643 (1172)
T KOG0926|consen 564 LRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETS 643 (1172)
T ss_pred hhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcc
Confidence 016899999999999999999999999999999999999
Q ss_pred CCCCCcCEEEE--------cCCCC----------ChhhHHHHhhhccCCCCccEEEEEEcCC
Q 039378 493 LDIPDVEVVIN--------YSFPL----------TTEDYVHRIGRTGRAGKKGVSHTFFTNH 536 (600)
Q Consensus 493 ldi~~v~~VI~--------~d~p~----------s~~~y~qr~GR~gR~g~~g~~~~~~~~~ 536 (600)
|.||++++||. ||--. |-++--||+|||||.| +|+||.+|+..
T Consensus 644 LTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 644 LTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 99999999996 44333 3444569999999998 99999999853
No 97
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=3.4e-29 Score=255.71 Aligned_cols=311 Identities=21% Similarity=0.274 Sum_probs=236.5
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.+-|+|..+|..+-++..|+++|.|.+|||.++-.++...+... -||++..|-++|..|-++++.....
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k-----------QRVIYTSPIKALSNQKYREl~~EF~ 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK-----------QRVIYTSPIKALSNQKYRELLEEFK 197 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc-----------CeEEeeChhhhhcchhHHHHHHHhc
Confidence 57799999999999999999999999999998766655544333 2489999999999999999887665
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcC
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA 359 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~ 359 (600)
. +.+.+|+..... .+..+|+|.+.|..++.++.--+..+.|||+||+|.|-+...+-.++.-+-.+|.+
T Consensus 198 D----VGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~ 266 (1041)
T KOG0948|consen 198 D----VGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDN 266 (1041)
T ss_pred c----cceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEecccc
Confidence 4 345566654432 26899999999999999988788999999999999999987777777777788999
Q ss_pred CcEEEEeccCChhHHHHHHH--hcCCCCeEEEECCcccccCCCeeEEEEE---------ecCc--c--------------
Q 039378 360 RQMVMFSATWPIEVHKLAEE--YMDPNPVKVVVGSEDLAANHDVMQIVEV---------LDDR--S-------------- 412 (600)
Q Consensus 360 ~q~i~~SATl~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~--~-------------- 412 (600)
.+.+++|||+|+..+ ++.+ .+...|..++..... +..++++... ++.. -
T Consensus 267 vr~VFLSATiPNA~q-FAeWI~~ihkQPcHVVYTdyR---PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~ 342 (1041)
T KOG0948|consen 267 VRFVFLSATIPNARQ-FAEWICHIHKQPCHVVYTDYR---PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRK 342 (1041)
T ss_pred ceEEEEeccCCCHHH-HHHHHHHHhcCCceEEeecCC---CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhc
Confidence 999999999997644 3333 233556655544322 1222333221 1111 0
Q ss_pred ------------------------hHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCe-------------
Q 039378 413 ------------------------RDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWK------------- 455 (600)
Q Consensus 413 ------------------------~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~------------- 455 (600)
....+..++..+......++|||+-|+++|+.++-.+..+.++
T Consensus 343 ~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~ 422 (1041)
T KOG0948|consen 343 AGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFN 422 (1041)
T ss_pred cCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHH
Confidence 0113444444444455679999999999999999887655432
Q ss_pred --------------------------EEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEE----cC
Q 039378 456 --------------------------VVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVIN----YS 505 (600)
Q Consensus 456 --------------------------~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d 505 (600)
++.+|||+-+--.+.+.-.|.+|-+++|+||.+++.|||.|.-.+|+- ||
T Consensus 423 nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfD 502 (1041)
T KOG0948|consen 423 NAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFD 502 (1041)
T ss_pred HHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccC
Confidence 789999999999999999999999999999999999999997666652 22
Q ss_pred ----CCCChhhHHHHhhhccCCCC--ccEEEEEEcCC
Q 039378 506 ----FPLTTEDYVHRIGRTGRAGK--KGVSHTFFTNH 536 (600)
Q Consensus 506 ----~p~s~~~y~qr~GR~gR~g~--~g~~~~~~~~~ 536 (600)
-..+--.|+|+.|||||.|. .|.|+.+++..
T Consensus 503 G~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 503 GKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred CcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 13356789999999999885 58888888764
No 98
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=1.4e-27 Score=252.08 Aligned_cols=291 Identities=19% Similarity=0.246 Sum_probs=192.4
Q ss_pred EEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHH-
Q 039378 219 IGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQ- 297 (600)
Q Consensus 219 i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 297 (600)
++.|+||||||.+|+.. +..++.. +.++||++|+++|+.|+++.|.+.. +..+..++++.+..+.
T Consensus 1 LL~g~TGsGKT~v~l~~-i~~~l~~----------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~ 66 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQA-IEKVLAL----------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKL 66 (505)
T ss_pred CccCCCCCCHHHHHHHH-HHHHHHc----------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHH
Confidence 46799999999998654 4444433 3358999999999999999998764 3567777877765443
Q ss_pred --HHHHhc-CCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCC-----C-hHHHHHHHHhcCcCCcEEEEecc
Q 039378 298 --ITALRS-GVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMG-----F-EEPVRFILSKISLARQMVMFSAT 368 (600)
Q Consensus 298 --~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~-----~-~~~~~~il~~~~~~~q~i~~SAT 368 (600)
+..+.. .++|||+|+..+. ..+.++++|||||+|...-+. | ...+.... ....+.++|++|||
T Consensus 67 ~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r-a~~~~~~vil~SAT 138 (505)
T TIGR00595 67 QAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR-AKKFNCPVVLGSAT 138 (505)
T ss_pred HHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHH-HHhcCCCEEEEeCC
Confidence 333333 4799999998763 357889999999999876432 1 11222223 33356789999999
Q ss_pred CChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCc---chHHHHHHHHHHHhhcCCCeEEEEEeehhc----
Q 039378 369 WPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDR---SRDQRLLALLEKYHKSQRNRVLVFALYQLE---- 441 (600)
Q Consensus 369 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~---- 441 (600)
++.+....+.. .....+....................... .-...++..+..... .++++|||+|++..
T Consensus 139 Psles~~~~~~---g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~-~g~qvLvflnrrGya~~~ 214 (505)
T TIGR00595 139 PSLESYHNAKQ---KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA-AGEQSILFLNRRGYSKNL 214 (505)
T ss_pred CCHHHHHHHhc---CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH-cCCcEEEEEeCCcCCCee
Confidence 76544333221 11111221111100111111111111110 111234444443332 35689999766532
Q ss_pred --------------------------------------------------------HHHHHHHHHhC--CCeEEEEcCCC
Q 039378 442 --------------------------------------------------------ADRLENMLRRS--GWKVVAIHGKK 463 (600)
Q Consensus 442 --------------------------------------------------------~~~l~~~L~~~--~~~~~~l~~~~ 463 (600)
.+++.+.|... +.++..+|+++
T Consensus 215 ~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~ 294 (505)
T TIGR00595 215 LCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDT 294 (505)
T ss_pred EhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEeccc
Confidence 47778888776 67899999999
Q ss_pred CHHHH--HHHHHHHhcCCCCEEEeccccccCCCCCCcCEEE--EcCCCCC----------hhhHHHHhhhccCCCCccEE
Q 039378 464 AQHER--TKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVI--NYSFPLT----------TEDYVHRIGRTGRAGKKGVS 529 (600)
Q Consensus 464 ~~~~r--~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI--~~d~p~s----------~~~y~qr~GR~gR~g~~g~~ 529 (600)
+...+ ..+++.|++|+..|||+|+++++|+|+|+|++|+ ++|...+ ...|+|++||+||.++.|.+
T Consensus 295 ~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~v 374 (505)
T TIGR00595 295 TSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQV 374 (505)
T ss_pred ccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEE
Confidence 87766 8999999999999999999999999999999986 5554222 35689999999999999998
Q ss_pred EEEEcC
Q 039378 530 HTFFTN 535 (600)
Q Consensus 530 ~~~~~~ 535 (600)
++....
T Consensus 375 iiqt~~ 380 (505)
T TIGR00595 375 IIQTYN 380 (505)
T ss_pred EEEeCC
Confidence 865433
No 99
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=9.2e-27 Score=253.58 Aligned_cols=308 Identities=21% Similarity=0.253 Sum_probs=237.9
Q ss_pred CCcHHHHHHhhhhhc----CC--cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHH
Q 039378 200 NPSPIQSHAWPFLLN----GR--DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDV 273 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~----~~--d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~ 273 (600)
.-||=|..||..+.+ ++ |-++||.-|-|||-+++-+++..+.. |.+|.|++||.-||+|.++.
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-----------GKQVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-----------GKQVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-----------CCeEEEEcccHHhHHHHHHH
Confidence 568999999998774 33 89999999999999988777776554 45589999999999999999
Q ss_pred HHHhcCCCCceEEEEeCCCChHHHHHHH---hc-CCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHH
Q 039378 274 LNDAGKPCGVKSVCVYGGTSKQPQITAL---RS-GVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPV 349 (600)
Q Consensus 274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~l---~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~ 349 (600)
|.+....+++++..+..-.+..++...+ .. ..||||+|.-- + ...+.+.++.+|||||=|+ |+-.-
T Consensus 663 FkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrL----L-~kdv~FkdLGLlIIDEEqR-----FGVk~ 732 (1139)
T COG1197 663 FKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRL----L-SKDVKFKDLGLLIIDEEQR-----FGVKH 732 (1139)
T ss_pred HHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHh----h-CCCcEEecCCeEEEechhh-----cCccH
Confidence 9999999999998888777766665443 33 48999999543 3 3455789999999999998 55445
Q ss_pred HHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCC
Q 039378 350 RFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQR 429 (600)
Q Consensus 350 ~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 429 (600)
+.-++.++.+.-++-||||+-|..-.+....+ ..-..|...+.+ ...+..++...+...-.. .++..+ ..+
T Consensus 733 KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~Gi-RdlSvI~TPP~~---R~pV~T~V~~~d~~~ire---AI~REl--~Rg 803 (1139)
T COG1197 733 KEKLKELRANVDVLTLSATPIPRTLNMSLSGI-RDLSVIATPPED---RLPVKTFVSEYDDLLIRE---AILREL--LRG 803 (1139)
T ss_pred HHHHHHHhccCcEEEeeCCCCcchHHHHHhcc-hhhhhccCCCCC---CcceEEEEecCChHHHHH---HHHHHH--hcC
Confidence 66677777788899999997665544444433 222233222221 122333333333222122 233333 247
Q ss_pred CeEEEEEeehhcHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCC
Q 039378 430 NRVLVFALYQLEADRLENMLRRS--GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFP 507 (600)
Q Consensus 430 ~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p 507 (600)
|++...+|.++....++..|+.. ...+++.||.|+..+-++++..|-+|++.|||||.+.+.|||||+++.+|..+..
T Consensus 804 GQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD 883 (1139)
T COG1197 804 GQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERAD 883 (1139)
T ss_pred CEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccc
Confidence 89999999999999999999987 4579999999999999999999999999999999999999999999999977654
Q ss_pred -CChhhHHHHhhhccCCCCccEEEEEEcCCc
Q 039378 508 -LTTEDYVHRIGRTGRAGKKGVSHTFFTNHN 537 (600)
Q Consensus 508 -~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d 537 (600)
...++..|.-||+||..+.++||.+|.+..
T Consensus 884 ~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 884 KFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred cccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 468899999999999999999999998754
No 100
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.3e-27 Score=254.52 Aligned_cols=330 Identities=18% Similarity=0.210 Sum_probs=237.4
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+++|..+--.+..|+ |+.++||.|||++|.+|++...+.... |.||+|++.||.|..+++..+..
T Consensus 82 ~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~~-----------VhIvT~ndyLA~RD~e~m~~l~~ 148 (908)
T PRK13107 82 RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGKG-----------VHVITVNDYLARRDAENNRPLFE 148 (908)
T ss_pred CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCCC-----------EEEEeCCHHHHHHHHHHHHHHHH
Confidence 67888988777776665 889999999999999999988765433 89999999999999999999999
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHH-HHHHHcc-CCC-----ccceEEEEEcccchhhcCC--------
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL-IDLIEMN-VCH-----LSEVSFVVLDEADRMLDMG-------- 344 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~-~~~-----l~~~~~lViDEah~l~~~~-------- 344 (600)
.+|+++.++.++.+.... .-.-+++|+++||+.| .++++.+ ... ...+.++||||||.++-..
T Consensus 149 ~lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIIS 226 (908)
T PRK13107 149 FLGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIIS 226 (908)
T ss_pred hcCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeec
Confidence 999999999998876432 2223689999999999 8888765 222 3678999999999875210
Q ss_pred --------ChHHHHHHHHhcC-------------------cC--------------------------------------
Q 039378 345 --------FEEPVRFILSKIS-------------------LA-------------------------------------- 359 (600)
Q Consensus 345 --------~~~~~~~il~~~~-------------------~~-------------------------------------- 359 (600)
....+..++..+. ..
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~ 306 (908)
T PRK13107 227 GAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISL 306 (908)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHH
Confidence 0000000000000 00
Q ss_pred ------------------------------------------------------------------------------Cc
Q 039378 360 ------------------------------------------------------------------------------RQ 361 (600)
Q Consensus 360 ------------------------------------------------------------------------------~q 361 (600)
.+
T Consensus 307 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (908)
T PRK13107 307 LHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEK 386 (908)
T ss_pred HHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhH
Confidence 12
Q ss_pred EEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhc
Q 039378 362 MVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLE 441 (600)
Q Consensus 362 ~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~ 441 (600)
+.+||+|......++...|- -.++.+............. ..+.....+...+.+-+..+.. .+.++||||+|+..
T Consensus 387 L~GMTGTa~te~~Ef~~iY~---l~Vv~IPTnkp~~R~d~~d-~iy~t~~~K~~Aii~ei~~~~~-~GrpVLV~t~sv~~ 461 (908)
T PRK13107 387 LAGMTGTADTEAFEFQHIYG---LDTVVVPTNRPMVRKDMAD-LVYLTADEKYQAIIKDIKDCRE-RGQPVLVGTVSIEQ 461 (908)
T ss_pred hhcccCCChHHHHHHHHHhC---CCEEECCCCCCccceeCCC-cEEeCHHHHHHHHHHHHHHHHH-cCCCEEEEeCcHHH
Confidence 34455554433333322221 1112222211111111111 1122334566666666665554 47899999999999
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCC------------------------
Q 039378 442 ADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPD------------------------ 497 (600)
Q Consensus 442 ~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~------------------------ 497 (600)
++.|+.+|...++++..+|+.+.+.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 462 se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 462 SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999998 9999999999999961
Q ss_pred -------------cCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHH----HHHHHHHHHh
Q 039378 498 -------------VEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALA----GELVNVLREA 551 (600)
Q Consensus 498 -------------v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~----~~i~~~l~~~ 551 (600)
==|||-...+.|..--.|-.||+||-|.+|.+..|++-+|.-+- ..+..++...
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~r~f~~~~~~~~~~~~ 610 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFASDRVSGMMKKL 610 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHHHHhChHHHHHHHHHc
Confidence 12788888999999999999999999999999999999887542 3455555544
No 101
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.5e-27 Score=243.77 Aligned_cols=306 Identities=20% Similarity=0.264 Sum_probs=219.0
Q ss_pred HHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH-hcCCCCce
Q 039378 206 SHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND-AGKPCGVK 284 (600)
Q Consensus 206 ~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~-~~~~~~~~ 284 (600)
.+.+..+.+++-+|+.|+||||||. ++|.+.. ... ......+.+.-|+|..|..+..++.. .+...|-.
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKST--QipQyL~--eaG------~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~ 126 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKST--QIPQYLA--EAG------FASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEE 126 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHH--hcc------cccCCcEEeecCchHHHHHHHHHHHHHhCCCcCce
Confidence 3556666677889999999999999 5664433 221 12233378899999999998877665 44444444
Q ss_pred EEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhc---CcCCc
Q 039378 285 SVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI---SLARQ 361 (600)
Q Consensus 285 ~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~---~~~~q 361 (600)
+...+.-.+.... ...|.++|.|.|++.+..+. .|+++++||+||||.-.- +.+.+..+++.+ +...+
T Consensus 127 VGY~IRFed~ts~------~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl--~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 127 VGYTIRFEDSTSK------DTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSL--HTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred eeeEEEecccCCC------ceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhh--HHHHHHHHHHHHHhcCCCce
Confidence 4443333222211 25899999999999887666 489999999999997532 334444444444 23457
Q ss_pred EEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHH-HHHHHHHHHhhcCCCeEEEEEeehh
Q 039378 362 MVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ-RLLALLEKYHKSQRNRVLVFALYQL 440 (600)
Q Consensus 362 ~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~lVF~~s~~ 440 (600)
+|++|||+. ......|+...++....+. .. .+..++...+..+... .+.-.++.+...+.+.+|||.+.++
T Consensus 198 lIimSATld---a~kfS~yF~~a~i~~i~GR-~f----PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 198 LIIMSATLD---AEKFSEYFNNAPILTIPGR-TF----PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQE 269 (674)
T ss_pred EEEEeeeec---HHHHHHHhcCCceEeecCC-CC----ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHH
Confidence 999999988 3445677745455544332 22 2333333333333333 3344445555567789999999999
Q ss_pred cHHHHHHHHHhCC--------CeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCC------
Q 039378 441 EADRLENMLRRSG--------WKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSF------ 506 (600)
Q Consensus 441 ~~~~l~~~L~~~~--------~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~------ 506 (600)
+++.+++.|.+.. .-+.++||.|+..++.++++.-..|..+|+++|++++..|.|+++.+||+-++
T Consensus 270 EIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y 349 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKY 349 (674)
T ss_pred HHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEee
Confidence 9999999997651 12578999999999999999999999999999999999999999999996442
Q ss_pred ------------CCChhhHHHHhhhccCCCCccEEEEEEcCCcHh
Q 039378 507 ------------PLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539 (600)
Q Consensus 507 ------------p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~ 539 (600)
|.|.++-.||.|||||.| +|.|+.+|+..+..
T Consensus 350 ~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 350 NPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYD 393 (674)
T ss_pred ccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHh
Confidence 668888999999999997 99999999988754
No 102
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.4e-27 Score=256.91 Aligned_cols=309 Identities=20% Similarity=0.265 Sum_probs=223.9
Q ss_pred HHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc-CCCCc
Q 039378 205 QSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG-KPCGV 283 (600)
Q Consensus 205 Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~-~~~~~ 283 (600)
..+.+..+.++.-+|++||||||||.+ +|.+..-... ..+..+.++-|.|-.|..+.+.+.+.. ...|-
T Consensus 55 ~~~i~~ai~~~~vvii~getGsGKTTq--lP~~lle~g~--------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 55 RDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFLLEEGL--------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHHHhhhc--------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 345556666777899999999999994 6644332221 123457888899988888888877644 33454
Q ss_pred eEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhh-cCCCh-HHHHHHHHhcCcCCc
Q 039378 284 KSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRML-DMGFE-EPVRFILSKISLARQ 361 (600)
Q Consensus 284 ~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~-~~~~~-~~~~~il~~~~~~~q 361 (600)
.+.+.+...+.. .....|-++|.|.|++.+..+.. |+.+++|||||||.-. +.++. ..+..++...+...+
T Consensus 125 ~VGY~iRfe~~~------s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 125 TVGYSIRFESKV------SPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred eeeEEEEeeccC------CCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 444444443332 12358999999999999987664 9999999999999743 22221 223344555565678
Q ss_pred EEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEE-EEecCcc-hHHHHHHHHHHHhhcCCCeEEEEEeeh
Q 039378 362 MVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIV-EVLDDRS-RDQRLLALLEKYHKSQRNRVLVFALYQ 439 (600)
Q Consensus 362 ~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~l~~~~~~~~~~~lVF~~s~ 439 (600)
+|+||||+..+ .+..++...|+ +.+....+. +..++ ....... -...+...+........|.+|||.+..
T Consensus 198 iIimSATld~~---rfs~~f~~apv-i~i~GR~fP----Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~ 269 (845)
T COG1643 198 LIIMSATLDAE---RFSAYFGNAPV-IEIEGRTYP----VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQ 269 (845)
T ss_pred EEEEecccCHH---HHHHHcCCCCE-EEecCCccc----eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcH
Confidence 99999998743 34566634444 444433222 22222 2222222 455666677777677789999999999
Q ss_pred hcHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCC---------
Q 039378 440 LEADRLENMLRR----SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSF--------- 506 (600)
Q Consensus 440 ~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~--------- 506 (600)
.+..++++.|.. ....++++||.|+..++.++++.-..|..+|++||++++.+|.|++|++||.-+.
T Consensus 270 ~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~ 349 (845)
T COG1643 270 REIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPR 349 (845)
T ss_pred HHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccc
Confidence 999999999997 3578999999999999999998888888889999999999999999999997442
Q ss_pred ---------CCChhhHHHHhhhccCCCCccEEEEEEcCCcHh
Q 039378 507 ---------PLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539 (600)
Q Consensus 507 ---------p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~ 539 (600)
|.|-++.-||.|||||.+ +|.||.+|+.++..
T Consensus 350 ~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 350 TGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred cCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 567788899999999997 99999999986543
No 103
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=7.4e-26 Score=212.81 Aligned_cols=308 Identities=20% Similarity=0.255 Sum_probs=217.8
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHH
Q 039378 200 NPSPIQSHAWPFLL----NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN 275 (600)
Q Consensus 200 ~~~~~Q~~~i~~il----~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~ 275 (600)
.++|.|+.+-..++ +..+.|++|-||+|||.+ +.+.+...++. |.++.|.+|....|..++.++.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~----------G~~vciASPRvDVclEl~~Rlk 165 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ----------GGRVCIASPRVDVCLELYPRLK 165 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc----------CCeEEEecCcccchHHHHHHHH
Confidence 78999998876655 557999999999999997 66677777766 5568999999999999999999
Q ss_pred HhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHH-
Q 039378 276 DAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS- 354 (600)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~- 354 (600)
..... ..+.++||+....-+ ..++|+|...|++.- ..++++||||+|...-. ....+...++
T Consensus 166 ~aF~~--~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~-~d~~L~~Av~~ 228 (441)
T COG4098 166 QAFSN--CDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFS-DDQSLQYAVKK 228 (441)
T ss_pred Hhhcc--CCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEEEEecccccccc-CCHHHHHHHHH
Confidence 87654 556888888765433 589999999887753 35789999999986532 2334444443
Q ss_pred hcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchH------HHHHHHHHHHhhcC
Q 039378 355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD------QRLLALLEKYHKSQ 428 (600)
Q Consensus 355 ~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~l~~~~~~~ 428 (600)
......-+|++|||.+..+..-+. ..+...+.+...-......+..+....+...+. .++...++...+ .
T Consensus 229 ark~~g~~IylTATp~k~l~r~~~---~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~-~ 304 (441)
T COG4098 229 ARKKEGATIYLTATPTKKLERKIL---KGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRK-T 304 (441)
T ss_pred hhcccCceEEEecCChHHHHHHhh---hCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHh-c
Confidence 334455799999999976654332 233333333332222222333333333222222 244455554433 3
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhC-C-CeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCC
Q 039378 429 RNRVLVFALYQLEADRLENMLRRS-G-WKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSF 506 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~-~-~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~ 506 (600)
+.++|||++++...+.++..|+.. + ..+..+|+.. ..|.+.+++|++|++.+||+|.+++||+.+|+|+++|.-.-
T Consensus 305 ~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgae 382 (441)
T COG4098 305 GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAE 382 (441)
T ss_pred CCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCC
Confidence 679999999999999999999543 3 3457888865 47899999999999999999999999999999999775432
Q ss_pred --CCChhhHHHHhhhccCCCC--ccEEEEEEcCCcHhHH
Q 039378 507 --PLTTEDYVHRIGRTGRAGK--KGVSHTFFTNHNKALA 541 (600)
Q Consensus 507 --p~s~~~y~qr~GR~gR~g~--~g~~~~~~~~~d~~~~ 541 (600)
-.+-+..+|.+||+||.-. .|.+..|..-....+.
T Consensus 383 h~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~ 421 (441)
T COG4098 383 HRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMK 421 (441)
T ss_pred cccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHH
Confidence 3577899999999999643 3655555444444443
No 104
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=3.7e-27 Score=256.64 Aligned_cols=314 Identities=20% Similarity=0.246 Sum_probs=229.6
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|.++|++++-.+.++..|++|||||+|||.+.-.++...+..+ -++++++|.++|..|.++.|.....
T Consensus 119 ~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~-----------qrviYTsPIKALsNQKyrdl~~~fg 187 (1041)
T COG4581 119 ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDG-----------QRVIYTSPIKALSNQKYRDLLAKFG 187 (1041)
T ss_pred CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcC-----------CceEeccchhhhhhhHHHHHHHHhh
Confidence 68899999999999999999999999999998665544443332 2379999999999999998887654
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcC
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA 359 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~ 359 (600)
...--+.+++|+.... .++.++|+|.+.|.+++.++...+..+.+||+||+|.|.+...+..++.++-.++..
T Consensus 188 dv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~ 260 (1041)
T COG4581 188 DVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDH 260 (1041)
T ss_pred hhhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCC
Confidence 3211124555555443 237899999999999999988889999999999999999998889999999999999
Q ss_pred CcEEEEeccCChhHHHHHHHhc--CCCCeEEEECCcccccCCCeeEEEE-------EecCcch-----------------
Q 039378 360 RQMVMFSATWPIEVHKLAEEYM--DPNPVKVVVGSEDLAANHDVMQIVE-------VLDDRSR----------------- 413 (600)
Q Consensus 360 ~q~i~~SATl~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~----------------- 413 (600)
.++++||||+|+..+ +...+- +..+..++...... .+..+++. ..+...+
T Consensus 261 v~~v~LSATv~N~~E-F~~Wi~~~~~~~~~vv~t~~Rp---vPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~ 336 (1041)
T COG4581 261 VRFVFLSATVPNAEE-FAEWIQRVHSQPIHVVSTEHRP---VPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFS 336 (1041)
T ss_pred CcEEEEeCCCCCHHH-HHHHHHhccCCCeEEEeecCCC---CCeEEEEecCCceeeeecccccchhhcchhhhhhhhccc
Confidence 999999999987644 322221 23344443332211 11111111 1111000
Q ss_pred ---------------------------HHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC--------------
Q 039378 414 ---------------------------DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS-------------- 452 (600)
Q Consensus 414 ---------------------------~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------- 452 (600)
......++..+.....-++|+||-++..|+..+..+...
T Consensus 337 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ 416 (1041)
T COG4581 337 EKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIRE 416 (1041)
T ss_pred hhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHH
Confidence 001122344444445668999999999999887776421
Q ss_pred --------------CC-------------eEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEE---
Q 039378 453 --------------GW-------------KVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVI--- 502 (600)
Q Consensus 453 --------------~~-------------~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI--- 502 (600)
++ .++.+|++|-+..+..+...|..|-++||++|.+++.|+|.|.-++|+
T Consensus 417 ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l 496 (1041)
T COG4581 417 IIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSL 496 (1041)
T ss_pred HHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeee
Confidence 11 156899999999999999999999999999999999999999766555
Q ss_pred -EcC----CCCChhhHHHHhhhccCCCCc--cEEEEEEcC
Q 039378 503 -NYS----FPLTTEDYVHRIGRTGRAGKK--GVSHTFFTN 535 (600)
Q Consensus 503 -~~d----~p~s~~~y~qr~GR~gR~g~~--g~~~~~~~~ 535 (600)
.+| .+.++..|.|+.|||||.|.. |.+++.-.+
T Consensus 497 ~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 497 SKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred EEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 122 355788999999999999864 888777443
No 105
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=1.8e-26 Score=261.40 Aligned_cols=310 Identities=18% Similarity=0.261 Sum_probs=196.4
Q ss_pred CCcHHHHHHhhhhh----cC-CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHH
Q 039378 200 NPSPIQSHAWPFLL----NG-RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274 (600)
Q Consensus 200 ~~~~~Q~~~i~~il----~~-~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~ 274 (600)
.++++|.+||..+. ++ +.++++++||||||.+ ++.++..++.... ..++|||+|+++|+.|+.+.|
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~t-ai~li~~L~~~~~--------~~rVLfLvDR~~L~~Qa~~~F 483 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRT-AIALMYRLLKAKR--------FRRILFLVDRSALGEQAEDAF 483 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHH-HHHHHHHHHhcCc--------cCeEEEEecHHHHHHHHHHHH
Confidence 58999999998765 33 5799999999999987 4445566655422 346899999999999999999
Q ss_pred HHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc-----CCCccceEEEEEcccchhhc-------
Q 039378 275 NDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN-----VCHLSEVSFVVLDEADRMLD------- 342 (600)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-----~~~l~~~~~lViDEah~l~~------- 342 (600)
..+..........+++....... .......|+|+|+..|...+... ...+..+++||+||||+-..
T Consensus 484 ~~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~ 561 (1123)
T PRK11448 484 KDTKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSE 561 (1123)
T ss_pred Hhcccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccccc
Confidence 98753222111112211110110 11234799999999997765321 13567899999999999531
Q ss_pred --CC------ChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHH--------------HhcCC--CCeEEEEC--Ccccc
Q 039378 343 --MG------FEEPVRFILSKISLARQMVMFSATWPIEVHKLAE--------------EYMDP--NPVKVVVG--SEDLA 396 (600)
Q Consensus 343 --~~------~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~--------------~~~~~--~~~~i~~~--~~~~~ 396 (600)
.+ +...+..++..+. ...|+||||+......+.. .++.. .|..+... .....
T Consensus 562 ~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~ 639 (1123)
T PRK11448 562 GELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIH 639 (1123)
T ss_pred chhccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccc
Confidence 00 1345666777553 4689999997543221110 01100 11111110 00000
Q ss_pred cCCC--ee-------EEE-EEecC---------------cchHHHHH-HHHHHHhhcCCCeEEEEEeehhcHHHHHHHHH
Q 039378 397 ANHD--VM-------QIV-EVLDD---------------RSRDQRLL-ALLEKYHKSQRNRVLVFALYQLEADRLENMLR 450 (600)
Q Consensus 397 ~~~~--~~-------~~~-~~~~~---------------~~~~~~l~-~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~ 450 (600)
.... .. ... ..... ......++ .++..+....++++||||.++.+|..+...|.
T Consensus 640 ~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~ 719 (1123)
T PRK11448 640 FEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLK 719 (1123)
T ss_pred ccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHH
Confidence 0000 00 000 00000 00000111 12222222335799999999999999988876
Q ss_pred hC------CC---eEEEEcCCCCHHHHHHHHHHHhcCCC-CEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhc
Q 039378 451 RS------GW---KVVAIHGKKAQHERTKSLSLFKEGTC-PLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 520 (600)
Q Consensus 451 ~~------~~---~~~~l~~~~~~~~r~~~~~~F~~g~~-~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~ 520 (600)
.. ++ .+..+||+++ ++..++++|+++.. .|||+++++.+|+|+|.+.+||+++++.|...|+||+||+
T Consensus 720 ~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRg 797 (1123)
T PRK11448 720 EAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRA 797 (1123)
T ss_pred HHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhh
Confidence 53 12 4567899886 56789999999887 5899999999999999999999999999999999999999
Q ss_pred cCCC
Q 039378 521 GRAG 524 (600)
Q Consensus 521 gR~g 524 (600)
.|..
T Consensus 798 tR~~ 801 (1123)
T PRK11448 798 TRLC 801 (1123)
T ss_pred ccCC
Confidence 9964
No 106
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.6e-26 Score=233.66 Aligned_cols=309 Identities=19% Similarity=0.215 Sum_probs=217.7
Q ss_pred HHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH-hcCCC
Q 039378 203 PIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND-AGKPC 281 (600)
Q Consensus 203 ~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~-~~~~~ 281 (600)
++-.+.+.++..++-+||.|+||||||. +||.+.+-...-. .+.++-+..|.|..|..+..++.+ .+..+
T Consensus 268 ~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk-------~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL 338 (902)
T KOG0923|consen 268 PYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTK-------GGKKIGCTQPRRVAAMSVAARVAEEMGVKL 338 (902)
T ss_pred hhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhccccc-------CCceEeecCcchHHHHHHHHHHHHHhCccc
Confidence 4455666677777889999999999999 5775544322211 133367888999999998877665 33333
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHH---HHhcCc
Q 039378 282 GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFI---LSKISL 358 (600)
Q Consensus 282 ~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~i---l~~~~~ 358 (600)
|-.+...+.-.+... ...-|-++|.|+|++.+.... .|.++++|||||||.-.- +.+.+..+ +..+++
T Consensus 339 G~eVGYsIRFEdcTS------ekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL--~TDILfgLvKDIar~Rp 409 (902)
T KOG0923|consen 339 GHEVGYSIRFEDCTS------EKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTL--HTDILFGLVKDIARFRP 409 (902)
T ss_pred ccccceEEEeccccC------cceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhh--hhhHHHHHHHHHHhhCC
Confidence 322222222111111 124678999999998776544 589999999999996421 22333333 334456
Q ss_pred CCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHH-HHHHHHHhhcCCCeEEEEEe
Q 039378 359 ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRL-LALLEKYHKSQRNRVLVFAL 437 (600)
Q Consensus 359 ~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~~~~~~~lVF~~ 437 (600)
...+++.|||+.. .-...|+...|++...+.. ..+.-++...+..+..... ..+++.+...+.+-+|||..
T Consensus 410 dLKllIsSAT~DA---ekFS~fFDdapIF~iPGRR-----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFlt 481 (902)
T KOG0923|consen 410 DLKLLISSATMDA---EKFSAFFDDAPIFRIPGRR-----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLT 481 (902)
T ss_pred cceEEeeccccCH---HHHHHhccCCcEEeccCcc-----cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEec
Confidence 7789999999874 3456788666766654432 1233344444444444433 33444445566789999999
Q ss_pred ehhcHHHHHHHHHhC---------CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCC--
Q 039378 438 YQLEADRLENMLRRS---------GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSF-- 506 (600)
Q Consensus 438 s~~~~~~l~~~L~~~---------~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~-- 506 (600)
.++........|..+ .+-++++|+.+|...+.++++.-..|..+|++||++++..|.|++|.+||.-++
T Consensus 482 GQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K 561 (902)
T KOG0923|consen 482 GQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVK 561 (902)
T ss_pred cHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcccc
Confidence 999988877776543 245899999999999999999999999999999999999999999999996442
Q ss_pred ----------------CCChhhHHHHhhhccCCCCccEEEEEEcCCcH
Q 039378 507 ----------------PLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNK 538 (600)
Q Consensus 507 ----------------p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~ 538 (600)
|.|-++-.||.|||||.| +|.|+.+|+.+..
T Consensus 562 ~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY 608 (902)
T KOG0923|consen 562 QNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAY 608 (902)
T ss_pred ccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhh
Confidence 567778889999999998 9999999996543
No 107
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.94 E-value=5.1e-26 Score=244.45 Aligned_cols=322 Identities=16% Similarity=0.203 Sum_probs=220.5
Q ss_pred CCCcHHHHHHhhhhh----cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHH
Q 039378 199 KNPSPIQSHAWPFLL----NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il----~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~ 274 (600)
..++.+|.++++|++ +++++|++.+||.|||+. .+..|..+..... ..|| .|||+|...+ ..|.+.|
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~------~~gp-flvvvplst~-~~W~~ef 439 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQ------IHGP-FLVVVPLSTI-TAWEREF 439 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhh------ccCC-eEEEeehhhh-HHHHHHH
Confidence 689999999999987 568999999999999997 4445666555432 1233 4899998555 6788888
Q ss_pred HHhcCCCCceEEEEeCCCChHHHHHHH----hc-----CCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCC
Q 039378 275 NDAGKPCGVKSVCVYGGTSKQPQITAL----RS-----GVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGF 345 (600)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~l----~~-----~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~ 345 (600)
..|. .+++++.+|....+..++.. .. .++++++|++.++.-- ..+.--.|.+++|||||+|.+..
T Consensus 440 ~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~i~w~~~~vDeahrLkN~~- 513 (1373)
T KOG0384|consen 440 ETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSKIPWRYLLVDEAHRLKNDE- 513 (1373)
T ss_pred HHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH--hhhccCCcceeeecHHhhcCchH-
Confidence 8887 47778888776655554432 12 3799999999886522 12233468899999999998743
Q ss_pred hHHHHHHHHhcCcCCcEEEEeccC-ChhHHHHHHHhcCCCCeEEEEC--------------------------------C
Q 039378 346 EEPVRFILSKISLARQMVMFSATW-PIEVHKLAEEYMDPNPVKVVVG--------------------------------S 392 (600)
Q Consensus 346 ~~~~~~il~~~~~~~q~i~~SATl-~~~~~~~~~~~~~~~~~~i~~~--------------------------------~ 392 (600)
..+...+..+..+. .+++|+|+ .+.+.++....-...|..+... .
T Consensus 514 -~~l~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkd 591 (1373)
T KOG0384|consen 514 -SKLYESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKD 591 (1373)
T ss_pred -HHHHHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhh
Confidence 34444566665544 66777773 2333333211100001000000 0
Q ss_pred cccccCCCeeEEEE------------------------------------------EecCc-----------------ch
Q 039378 393 EDLAANHDVMQIVE------------------------------------------VLDDR-----------------SR 413 (600)
Q Consensus 393 ~~~~~~~~~~~~~~------------------------------------------~~~~~-----------------~~ 413 (600)
..........++.. +|+.+ ..
T Consensus 592 vekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~ 671 (1373)
T KOG0384|consen 592 VEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMR 671 (1373)
T ss_pred hccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcch
Confidence 00000000111110 00000 00
Q ss_pred HHHHHH-------------HHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhc---
Q 039378 414 DQRLLA-------------LLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE--- 477 (600)
Q Consensus 414 ~~~l~~-------------~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~--- 477 (600)
...+.. +|..+ ...+++||||.+.+.+++.|+.+|..+++++-.|.|.+....|+..++.|+.
T Consensus 672 d~~L~~lI~sSGKlVLLDKLL~rL-k~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~S 750 (1373)
T KOG0384|consen 672 DEALQALIQSSGKLVLLDKLLPRL-KEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDS 750 (1373)
T ss_pred HHHHHHHHHhcCcEEeHHHHHHHH-hcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCC
Confidence 111111 22222 2357899999999999999999999999999999999999999999999985
Q ss_pred CCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccE--EEEEEcCCcH
Q 039378 478 GTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGV--SHTFFTNHNK 538 (600)
Q Consensus 478 g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~--~~~~~~~~d~ 538 (600)
..+.+|+||.+++.|||+..++.||+||..|||..-+|+..||+|+||+.. +|.|++.+..
T Consensus 751 ddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 751 DDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred CceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 468899999999999999999999999999999999999999999999764 5777887643
No 108
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=1.1e-25 Score=206.42 Aligned_cols=165 Identities=33% Similarity=0.521 Sum_probs=140.6
Q ss_pred cHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCC
Q 039378 202 SPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPC 281 (600)
Q Consensus 202 ~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~ 281 (600)
||+|.++++.+.+++++++.||||+|||++|++|++..+.... ..+++|++|+++|+.|+.+.+..++...
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~---------~~~~lii~P~~~l~~q~~~~~~~~~~~~ 71 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK---------DARVLIIVPTRALAEQQFERLRKFFSNT 71 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS---------SSEEEEEESSHHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC---------CceEEEEeeccccccccccccccccccc
Confidence 6899999999999999999999999999999999998887652 2258999999999999999999999887
Q ss_pred CceEEEEeCCCChH-HHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCc--
Q 039378 282 GVKSVCVYGGTSKQ-PQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL-- 358 (600)
Q Consensus 282 ~~~~~~~~~g~~~~-~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~-- 358 (600)
++++..++++.... .....+..+++|+|+||++|.+.+......+.++++|||||+|.+..+++...+..++..+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~ 151 (169)
T PF00270_consen 72 NVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK 151 (169)
T ss_dssp TSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT
T ss_pred ccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCC
Confidence 88899999988755 333444556999999999999999876557777999999999999998778888888887743
Q ss_pred CCcEEEEeccCChhHHH
Q 039378 359 ARQMVMFSATWPIEVHK 375 (600)
Q Consensus 359 ~~q~i~~SATl~~~~~~ 375 (600)
..|++++|||++..++.
T Consensus 152 ~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 152 NIQIILLSATLPSNVEK 168 (169)
T ss_dssp TSEEEEEESSSTHHHHH
T ss_pred CCcEEEEeeCCChhHhh
Confidence 57899999999966554
No 109
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=237.65 Aligned_cols=330 Identities=23% Similarity=0.282 Sum_probs=234.7
Q ss_pred CCCCCcHHHHHHh--hhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAW--PFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274 (600)
Q Consensus 197 ~~~~~~~~Q~~~i--~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~ 274 (600)
|...++.||.+++ |.++.++++|..+||+.|||++..+-++..++..++. ++.+.|....++.-...+
T Consensus 220 gi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~----------~llilp~vsiv~Ek~~~l 289 (1008)
T KOG0950|consen 220 GILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRN----------VLLILPYVSIVQEKISAL 289 (1008)
T ss_pred hHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhc----------eeEecceeehhHHHHhhh
Confidence 7788999999997 6688889999999999999999999888888776442 688899988888888888
Q ss_pred HHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc--CCCccceEEEEEcccchhhcCCChHHHHHH
Q 039378 275 NDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN--VCHLSEVSFVVLDEADRMLDMGFEEPVRFI 352 (600)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~--~~~l~~~~~lViDEah~l~~~~~~~~~~~i 352 (600)
..+....|+.+...+|........ +.-.|.|||.++-..++..- .-.+..+++||+||.|.+.+.+.+..++.+
T Consensus 290 ~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~ 365 (1008)
T KOG0950|consen 290 SPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELL 365 (1008)
T ss_pred hhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHH
Confidence 888888899888877665544332 23589999999876655331 123667899999999999999988888888
Q ss_pred HHhcC-----cCCcEEEEeccCChhHHHHHHHhcCCCCeEEE-ECCcccccCCCeeEEEEEe-----------------c
Q 039378 353 LSKIS-----LARQMVMFSATWPIEVHKLAEEYMDPNPVKVV-VGSEDLAANHDVMQIVEVL-----------------D 409 (600)
Q Consensus 353 l~~~~-----~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~-----------------~ 409 (600)
+..+- ...|+|+||||+|+. .++..++. ..+... ..+..+.....+....... .
T Consensus 366 l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~-A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g 442 (1008)
T KOG0950|consen 366 LAKILYENLETSVQIIGMSATIPNN--SLLQDWLD-AFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLG 442 (1008)
T ss_pred HHHHHHhccccceeEeeeecccCCh--HHHHHHhh-hhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcc
Confidence 76652 234799999999863 22333332 111110 0000000000000000000 0
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHh--------------------------------------
Q 039378 410 DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRR-------------------------------------- 451 (600)
Q Consensus 410 ~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~-------------------------------------- 451 (600)
..+. +.+..++..... .+.++||||+++..++.++..+..
T Consensus 443 ~~dp-D~~v~L~tet~~-e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~t 520 (1008)
T KOG0950|consen 443 DEDP-DHLVGLCTETAP-EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKT 520 (1008)
T ss_pred cCCC-cceeeehhhhhh-cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHhee
Confidence 0000 122222222221 245699999999999888755421
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcC----CCCChhhHHHHhhhccCCCC--
Q 039378 452 SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYS----FPLTTEDYVHRIGRTGRAGK-- 525 (600)
Q Consensus 452 ~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d----~p~s~~~y~qr~GR~gR~g~-- 525 (600)
..+.+..+|++++..+|..+...|+.|.+.|++||+.++.|+|+|..+++|-.- ...+...|.||+|||||+|-
T Consensus 521 i~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT 600 (1008)
T KOG0950|consen 521 IPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDT 600 (1008)
T ss_pred ccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhccccc
Confidence 013578999999999999999999999999999999999999999988888432 34567899999999999875
Q ss_pred ccEEEEEEcCCcHhHHHHHH
Q 039378 526 KGVSHTFFTNHNKALAGELV 545 (600)
Q Consensus 526 ~g~~~~~~~~~d~~~~~~i~ 545 (600)
.|.+++++...+......++
T Consensus 601 ~GdsiLI~k~~e~~~~~~lv 620 (1008)
T KOG0950|consen 601 LGDSILIIKSSEKKRVRELV 620 (1008)
T ss_pred CcceEEEeeccchhHHHHHH
Confidence 48999999999876655443
No 110
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.94 E-value=5.4e-25 Score=226.99 Aligned_cols=322 Identities=19% Similarity=0.269 Sum_probs=221.2
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHH
Q 039378 200 NPSPIQSHAWPFLL----NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN 275 (600)
Q Consensus 200 ~~~~~Q~~~i~~il----~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~ 275 (600)
.+-+||.-+++|+. .+-+.|++.+||.|||.+ +|+.+..+..... .||. |||||...| ..|.++|.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~-------~gpH-LVVvPsSTl-eNWlrEf~ 468 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN-------PGPH-LVVVPSSTL-ENWLREFA 468 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC-------CCCc-EEEecchhH-HHHHHHHH
Confidence 37799999999966 445789999999999987 5555665555433 2333 899999777 88899999
Q ss_pred HhcCCCCceEEEEeCCCChHHHHHHHh----cCCcEEEEchHHHHHHH-HccCCCccceEEEEEcccchhhcCCChHHHH
Q 039378 276 DAGKPCGVKSVCVYGGTSKQPQITALR----SGVDIVIGTPGRLIDLI-EMNVCHLSEVSFVVLDEADRMLDMGFEEPVR 350 (600)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~l~----~~~~Iiv~Tp~~l~~~l-~~~~~~l~~~~~lViDEah~l~~~~~~~~~~ 350 (600)
+|++. +++...||....+..++... .+++|+++||.....-- .+..+.-.+|.++|+||+|.|.+.+ ...+.
T Consensus 469 kwCPs--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~ 545 (941)
T KOG0389|consen 469 KWCPS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYK 545 (941)
T ss_pred HhCCc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHH
Confidence 99975 77788888776655554432 25899999997653211 1112334578999999999998863 44555
Q ss_pred HHHHhcCcCCcEEEEeccCCh-hH--------------------------------------------------------
Q 039378 351 FILSKISLARQMVMFSATWPI-EV-------------------------------------------------------- 373 (600)
Q Consensus 351 ~il~~~~~~~q~i~~SATl~~-~~-------------------------------------------------------- 373 (600)
.++..- +.+.+++|+|+-. .+
T Consensus 546 ~LM~I~--An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PF 623 (941)
T KOG0389|consen 546 HLMSIN--ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPF 623 (941)
T ss_pred Hhcccc--ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHH
Confidence 555432 4567888888210 00
Q ss_pred --HHHHHHhcCCCCe---EEEECC------------------------cc--c-----------ccCCCee--EEE----
Q 039378 374 --HKLAEEYMDPNPV---KVVVGS------------------------ED--L-----------AANHDVM--QIV---- 405 (600)
Q Consensus 374 --~~~~~~~~~~~~~---~i~~~~------------------------~~--~-----------~~~~~~~--~~~---- 405 (600)
+.+-...+..-|. .|.... .+ . ..++... .++
T Consensus 624 ILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~ 703 (941)
T KOG0389|consen 624 ILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEK 703 (941)
T ss_pred HHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHH
Confidence 0000000000000 000000 00 0 0000000 000
Q ss_pred ---------------E------------------------------------EecCcchHHHHHHHHHHHhhcCCCeEEE
Q 039378 406 ---------------E------------------------------------VLDDRSRDQRLLALLEKYHKSQRNRVLV 434 (600)
Q Consensus 406 ---------------~------------------------------------~~~~~~~~~~l~~~l~~~~~~~~~~~lV 434 (600)
. ..-...+...|..+|..+... +.+|||
T Consensus 704 L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~-G~RVLi 782 (941)
T KOG0389|consen 704 LRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKK-GDRVLI 782 (941)
T ss_pred HHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhc-CCEEEE
Confidence 0 000123445555566555443 589999
Q ss_pred EEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCC--CCEEEeccccccCCCCCCcCEEEEcCCCCChhh
Q 039378 435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT--CPLMVATDVAARGLDIPDVEVVINYSFPLTTED 512 (600)
Q Consensus 435 F~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~--~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~ 512 (600)
|.+...+++.|...|..+++.+..+.|.+.-.+|+.+++.|...+ +.+|++|.+++.|||+.++++||.||+..||-.
T Consensus 783 FSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~d 862 (941)
T KOG0389|consen 783 FSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYD 862 (941)
T ss_pred eeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcc
Confidence 999999999999999999999999999999999999999998764 458999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCcc--EEEEEEcCCc
Q 039378 513 YVHRIGRTGRAGKKG--VSHTFFTNHN 537 (600)
Q Consensus 513 y~qr~GR~gR~g~~g--~~~~~~~~~d 537 (600)
-.|.-.||+|.||.. .++.|++...
T Consensus 863 D~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 863 DKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred cchhHHHHHhhCCcceeEEEEEEecCc
Confidence 999999999999875 5566677654
No 111
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=5e-25 Score=223.16 Aligned_cols=307 Identities=18% Similarity=0.213 Sum_probs=206.3
Q ss_pred HHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh-cCCC
Q 039378 203 PIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA-GKPC 281 (600)
Q Consensus 203 ~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~-~~~~ 281 (600)
..+.+.+..+..++-+++.++||||||.+ +|.+ ++.... .....+-+..|.|..|..+...+... +..+
T Consensus 359 ~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~Qy--L~edGY------~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 359 ACRDQLLSVIRENQVVVIVGETGSGKTTQ--LAQY--LYEDGY------ADNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred HHHHHHHHHHhhCcEEEEEecCCCCchhh--hHHH--HHhccc------ccCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 44555666666777789999999999994 5533 333321 12334667789999999998887754 3333
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhc---Cc
Q 039378 282 GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI---SL 358 (600)
Q Consensus 282 ~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~---~~ 358 (600)
|-.+.+.+...+... ...-|-++|.|.|++..-.+. .|.++++||+||||.-.- ..+.+..+++.. +.
T Consensus 429 G~~VGYsIRFEdvT~------~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERsl--NtDilfGllk~~larRr 499 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVTS------EDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSL--NTDILFGLLKKVLARRR 499 (1042)
T ss_pred ccccceEEEeeecCC------CceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhccc--chHHHHHHHHHHHHhhc
Confidence 433322222211111 124788999999988654433 588999999999997532 112222333222 34
Q ss_pred CCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHH-HHHHHHHHHhhcCCCeEEEEEe
Q 039378 359 ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ-RLLALLEKYHKSQRNRVLVFAL 437 (600)
Q Consensus 359 ~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~lVF~~ 437 (600)
+..+|++|||+.. +-...|+++.|.....+.. . .+..++...+..+... .+...+........+.+|||..
T Consensus 500 dlKliVtSATm~a---~kf~nfFgn~p~f~IpGRT-y----PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmt 571 (1042)
T KOG0924|consen 500 DLKLIVTSATMDA---QKFSNFFGNCPQFTIPGRT-Y----PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMT 571 (1042)
T ss_pred cceEEEeeccccH---HHHHHHhCCCceeeecCCc-c----ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecC
Confidence 5689999999873 3345667556655544321 1 1222222222222111 2222333333345689999999
Q ss_pred ehhcHHHHHHHHHh----------CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcC--
Q 039378 438 YQLEADRLENMLRR----------SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYS-- 505 (600)
Q Consensus 438 s~~~~~~l~~~L~~----------~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d-- 505 (600)
.++.++..+..+.. .++.++++++.||..-+.++++.-..|..+++|||++++..|.||++.+||..+
T Consensus 572 GqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~ 651 (1042)
T KOG0924|consen 572 GQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYC 651 (1042)
T ss_pred CCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCce
Confidence 99888776655542 157899999999999999999988899999999999999999999999999754
Q ss_pred ----------------CCCChhhHHHHhhhccCCCCccEEEEEEcCCc
Q 039378 506 ----------------FPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN 537 (600)
Q Consensus 506 ----------------~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d 537 (600)
.|.|.+.-.||.|||||.| +|.||.+|+...
T Consensus 652 K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~a 698 (1042)
T KOG0924|consen 652 KLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDA 698 (1042)
T ss_pred eeeecccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhH
Confidence 3677888899999999998 999999999843
No 112
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=4.8e-24 Score=229.89 Aligned_cols=140 Identities=21% Similarity=0.283 Sum_probs=119.1
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccc
Q 039378 411 RSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAA 490 (600)
Q Consensus 411 ~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~ 490 (600)
..+...+...+..... .+.++||||+|+..++.|+..|...++++..||+ .+.+|+..+..|..+...|+|||++++
T Consensus 581 ~eK~~Ali~~I~~~~~-~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAG 657 (1025)
T PRK12900 581 REKYNAIVLKVEELQK-KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAG 657 (1025)
T ss_pred HHHHHHHHHHHHHHhh-CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcC
Confidence 3456666666655443 4679999999999999999999999999999997 688999999999999999999999999
Q ss_pred cCCCCC---CcC-----EEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHH----HHHHHHHHHhcC
Q 039378 491 RGLDIP---DVE-----VVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALA----GELVNVLREARQ 553 (600)
Q Consensus 491 ~Gldi~---~v~-----~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~----~~i~~~l~~~~~ 553 (600)
||+||+ +|. +||+++.|.|...|.||+|||||.|.+|.+.+|++.+|.-+- ..+..++...+.
T Consensus 658 RGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~~ 732 (1025)
T PRK12900 658 RGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDRLGH 732 (1025)
T ss_pred CCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHHcCC
Confidence 999999 554 459999999999999999999999999999999999886542 356666655554
No 113
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.92 E-value=3.6e-24 Score=229.34 Aligned_cols=328 Identities=16% Similarity=0.192 Sum_probs=215.6
Q ss_pred CCcHHHHHHhhhhh---cC-CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHH
Q 039378 200 NPSPIQSHAWPFLL---NG-RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN 275 (600)
Q Consensus 200 ~~~~~Q~~~i~~il---~~-~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~ 275 (600)
.++.||+++++|+. .. -+.|+|..||.|||++.+.-+.....+++. ..........|||||. .|+--|..++.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s--~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRS--ESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcc--cchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 46789999999965 22 389999999999999754333333333311 1111223347999997 89999999999
Q ss_pred HhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHh
Q 039378 276 DAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSK 355 (600)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~ 355 (600)
++.+. +++...+|+...+...+.--++.+|+|++|+.+.+-+. .+.-..|.|.|+||.|-|.+. ...+...++.
T Consensus 1052 kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~--ktkl~kavkq 1125 (1549)
T KOG0392|consen 1052 KFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQ 1125 (1549)
T ss_pred Hhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecch--HHHHHHHHHH
Confidence 99877 56666777766665555555668999999998865332 122346789999999988773 4455555666
Q ss_pred cCcCCcEEEEeccC------------------------------------------------------------------
Q 039378 356 ISLARQMVMFSATW------------------------------------------------------------------ 369 (600)
Q Consensus 356 ~~~~~q~i~~SATl------------------------------------------------------------------ 369 (600)
+..+ +.+++|+|+
T Consensus 1126 L~a~-hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~L 1204 (1549)
T KOG0392|consen 1126 LRAN-HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLL 1204 (1549)
T ss_pred Hhhc-ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHH
Confidence 5543 477888882
Q ss_pred -----------Chh------------HHHHHHHhcCCCCeEE--EECCcccccCCC-------ee-------EE-EEEe-
Q 039378 370 -----------PIE------------VHKLAEEYMDPNPVKV--VVGSEDLAANHD-------VM-------QI-VEVL- 408 (600)
Q Consensus 370 -----------~~~------------~~~~~~~~~~~~~~~i--~~~~~~~~~~~~-------~~-------~~-~~~~- 408 (600)
|+. ..++.+.|.......+ .+.......... .+ +- ....
T Consensus 1205 RRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~ 1284 (1549)
T KOG0392|consen 1205 RRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTP 1284 (1549)
T ss_pred HHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCC
Confidence 110 0111111110000000 000000000000 00 00 0000
Q ss_pred ----------------------cCcchHHHHHHHHHHHhhc-------------CCCeEEEEEeehhcHHHHHHHHHhC-
Q 039378 409 ----------------------DDRSRDQRLLALLEKYHKS-------------QRNRVLVFALYQLEADRLENMLRRS- 452 (600)
Q Consensus 409 ----------------------~~~~~~~~l~~~l~~~~~~-------------~~~~~lVF~~s~~~~~~l~~~L~~~- 452 (600)
....|..++..++..+.-. .++++||||+-+.+++.+.+-|-+.
T Consensus 1285 ~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~ 1364 (1549)
T KOG0392|consen 1285 VHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKY 1364 (1549)
T ss_pred CcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhh
Confidence 0122334444455444221 3579999999999999999887654
Q ss_pred --CCeEEEEcCCCCHHHHHHHHHHHhcC-CCCEE-EeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccE
Q 039378 453 --GWKVVAIHGKKAQHERTKSLSLFKEG-TCPLM-VATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGV 528 (600)
Q Consensus 453 --~~~~~~l~~~~~~~~r~~~~~~F~~g-~~~vL-vaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~ 528 (600)
.+.+..+.|..++.+|+++.++|+++ .+.|| ++|.+++-|+|+.+++.||+++-.|||-.-+|.+.||+|.||+..
T Consensus 1365 mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrv 1444 (1549)
T KOG0392|consen 1365 MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRV 1444 (1549)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCcee
Confidence 34566999999999999999999998 67765 667999999999999999999999999999999999999999875
Q ss_pred E--EEEEcCCc
Q 039378 529 S--HTFFTNHN 537 (600)
Q Consensus 529 ~--~~~~~~~d 537 (600)
+ |.|++...
T Consensus 1445 VNVyRlItrGT 1455 (1549)
T KOG0392|consen 1445 VNVYRLITRGT 1455 (1549)
T ss_pred eeeeeehhccc
Confidence 5 55666553
No 114
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.92 E-value=5.3e-23 Score=218.50 Aligned_cols=323 Identities=18% Similarity=0.232 Sum_probs=208.4
Q ss_pred CCcHHHHHHhhhhhcC----------CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHH
Q 039378 200 NPSPIQSHAWPFLLNG----------RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQ 269 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~----------~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q 269 (600)
.++|+|++++..+... ..+|++..+|+|||+. +|+.+..+++..+... ..--++|||+|. .|+..
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~---~~~~k~lVV~P~-sLv~n 312 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAK---PLINKPLVVAPS-SLVNN 312 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCcc---ccccccEEEccH-HHHHH
Confidence 5789999999987632 2478889999999998 5667777776643210 012347999997 89999
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCChH----HHHHHH---hcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhc
Q 039378 270 IYDVLNDAGKPCGVKSVCVYGGTSKQ----PQITAL---RSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLD 342 (600)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~l---~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~ 342 (600)
|.++|.+|.....+....+++..... ..+..+ .-...|++.+++.+.+.+. .+....+++||+||+|++.+
T Consensus 313 WkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 313 WKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccc
Confidence 99999999876667777788877641 001101 0125788999999876654 33467889999999999987
Q ss_pred CCChHHHHHHHHhcCcCCcEEEEeccCCh---------------------------------------------------
Q 039378 343 MGFEEPVRFILSKISLARQMVMFSATWPI--------------------------------------------------- 371 (600)
Q Consensus 343 ~~~~~~~~~il~~~~~~~q~i~~SATl~~--------------------------------------------------- 371 (600)
.. ..+...+..+.. ++.|++|+|+=.
T Consensus 391 ~~--s~~~kaL~~l~t-~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl 467 (776)
T KOG0390|consen 391 SD--SLTLKALSSLKT-PRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERL 467 (776)
T ss_pred hh--hHHHHHHHhcCC-CceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHH
Confidence 53 445556666654 347888999310
Q ss_pred -hHHHHHHHhcCCCC------------e-EEEECCcccc--------c-----------------------CCCeeEEEE
Q 039378 372 -EVHKLAEEYMDPNP------------V-KVVVGSEDLA--------A-----------------------NHDVMQIVE 406 (600)
Q Consensus 372 -~~~~~~~~~~~~~~------------~-~i~~~~~~~~--------~-----------------------~~~~~~~~~ 406 (600)
++..+...|+.... . ++........ . ......+..
T Consensus 468 ~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~ 547 (776)
T KOG0390|consen 468 QELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCE 547 (776)
T ss_pred HHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccc
Confidence 01122222221100 0 0111000000 0 000000000
Q ss_pred ----------------------EecCcchHHHHHHHHHHHhhcCCCeEEEEEee----hhcHHHHHHHHHhCCCeEEEEc
Q 039378 407 ----------------------VLDDRSRDQRLLALLEKYHKSQRNRVLVFALY----QLEADRLENMLRRSGWKVVAIH 460 (600)
Q Consensus 407 ----------------------~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s----~~~~~~l~~~L~~~~~~~~~l~ 460 (600)
......+...++.++..+. ....++++|+.- ....+.+...++-.|+.++.+|
T Consensus 548 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~-~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLd 626 (776)
T KOG0390|consen 548 KTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLE-VIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLD 626 (776)
T ss_pred cccccccccChHhhhcccccccccccchhhhHHHHHHHHHH-HHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEc
Confidence 0001111222333332221 113455555544 4444555555566699999999
Q ss_pred CCCCHHHHHHHHHHHhcCC---CCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEE
Q 039378 461 GKKAQHERTKSLSLFKEGT---CPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFF 533 (600)
Q Consensus 461 ~~~~~~~r~~~~~~F~~g~---~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~ 533 (600)
|.|+..+|+.+++.|++.. .-+|.+|.+.+.||++-+++.||.||++|||+.-.|+++|+.|.||+..|++|-
T Consensus 627 G~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 627 GKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred CCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 9999999999999998643 447788899999999999999999999999999999999999999998777664
No 115
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.91 E-value=1.4e-22 Score=199.03 Aligned_cols=318 Identities=17% Similarity=0.194 Sum_probs=215.8
Q ss_pred CCCcHHHHHHhhhhh-cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 199 KNPSPIQSHAWPFLL-NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il-~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
+.+.|+|++++.+.+ .|..++++.+||.|||++++.-+-.+...++ .|||||. .|-..|.+.+.+|
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwp------------lliVcPA-svrftWa~al~r~ 263 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWP------------LLIVCPA-SVRFTWAKALNRF 263 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCc------------EEEEecH-HHhHHHHHHHHHh
Confidence 345699999998877 5668999999999999985433222222222 5999998 6668999999999
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcC
Q 039378 278 GKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357 (600)
Q Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~ 357 (600)
...+-. +.++.++.+.... +.....|.|.+++.|..+-. .+.-..+.+||+||+|.+.+. -......++..+.
T Consensus 264 lps~~p-i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk 336 (689)
T KOG1000|consen 264 LPSIHP-IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLK 336 (689)
T ss_pred cccccc-eEEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhcc-chhhhhhhhhHHH
Confidence 875433 3344444433211 22235799999998865432 233446899999999988764 4455666777777
Q ss_pred cCCcEEEEeccCC-------------------hhHHHHHHHhcCCCCeEEEECCccc-----------------------
Q 039378 358 LARQMVMFSATWP-------------------IEVHKLAEEYMDPNPVKVVVGSEDL----------------------- 395 (600)
Q Consensus 358 ~~~q~i~~SATl~-------------------~~~~~~~~~~~~~~~~~i~~~~~~~----------------------- 395 (600)
...++|++|+|+. +...++..+|+....+.+..+...-
T Consensus 337 ~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dv 416 (689)
T KOG1000|consen 337 VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADV 416 (689)
T ss_pred HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999942 1222333344432222221111000
Q ss_pred --ccCCCeeEEEEEecC-------------------------------------cchHHHHHHHHHH---HhhcCCCeEE
Q 039378 396 --AANHDVMQIVEVLDD-------------------------------------RSRDQRLLALLEK---YHKSQRNRVL 433 (600)
Q Consensus 396 --~~~~~~~~~~~~~~~-------------------------------------~~~~~~l~~~l~~---~~~~~~~~~l 433 (600)
..+.........+.. ..+...+.+.+.. +....+.+.+
T Consensus 417 L~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kfl 496 (689)
T KOG1000|consen 417 LKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFL 496 (689)
T ss_pred HhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEE
Confidence 000111111111110 0111111112211 1223567999
Q ss_pred EEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CCE-EEeccccccCCCCCCcCEEEEcCCCCChh
Q 039378 434 VFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT-CPL-MVATDVAARGLDIPDVEVVINYSFPLTTE 511 (600)
Q Consensus 434 VF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~-~~v-LvaT~~~~~Gldi~~v~~VI~~d~p~s~~ 511 (600)
|||+.....+.+...+...++....|.|.+++..|....+.|+... +.| +++..+++.||++...+.||+..++|||.
T Consensus 497 VFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPg 576 (689)
T KOG1000|consen 497 VFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPG 576 (689)
T ss_pred EEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCc
Confidence 9999999999999999999999999999999999999999998654 443 56668899999999999999999999999
Q ss_pred hHHHHhhhccCCCCccEEEEEEcCC
Q 039378 512 DYVHRIGRTGRAGKKGVSHTFFTNH 536 (600)
Q Consensus 512 ~y~qr~GR~gR~g~~g~~~~~~~~~ 536 (600)
..+|.-.|++|.||+..+.++|...
T Consensus 577 vLlQAEDRaHRiGQkssV~v~ylvA 601 (689)
T KOG1000|consen 577 VLLQAEDRAHRIGQKSSVFVQYLVA 601 (689)
T ss_pred eEEechhhhhhccccceeeEEEEEe
Confidence 9999999999999998777666543
No 116
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=3.2e-23 Score=229.34 Aligned_cols=328 Identities=19% Similarity=0.209 Sum_probs=210.1
Q ss_pred CcHHHHHHhhhhhcC---C-cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 201 PSPIQSHAWPFLLNG---R-DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 201 ~~~~Q~~~i~~il~~---~-d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
.++.|..++..++.. . .+++.||||+|||.+.+++++..+.... ...++++++.|++.++.++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~-------~~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI-------KLKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc-------cccceEEEEccHHHHHHHHHHHHHh
Confidence 488999999888754 3 6889999999999998888776665531 1256789999999999999999998
Q ss_pred hcCCCCceEEEEeCCCChHHHHHH--------------HhcCCcEEEEchHHHHHHHHccCCC----ccceEEEEEcccc
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQITA--------------LRSGVDIVIGTPGRLIDLIEMNVCH----LSEVSFVVLDEAD 338 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~--------------l~~~~~Iiv~Tp~~l~~~l~~~~~~----l~~~~~lViDEah 338 (600)
.....++......+.....-.... ......++++||..+.......... .-..+.+|+||+|
T Consensus 269 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 269 IFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred hhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 765543322212222211110000 0011345556665554422111111 1235789999999
Q ss_pred hhhcCCChHHHHHHHHhc-CcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcc-cccCCCeeEEEEEecCcchHHH
Q 039378 339 RMLDMGFEEPVRFILSKI-SLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSED-LAANHDVMQIVEVLDDRSRDQR 416 (600)
Q Consensus 339 ~l~~~~~~~~~~~il~~~-~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 416 (600)
.+........+..++..+ ..+..+|+||||+|+.........+............. ......+.+.............
T Consensus 349 ~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 428 (733)
T COG1203 349 LYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEE 428 (733)
T ss_pred hhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHh
Confidence 887653223333333332 34678999999999999998888774333332211100 0000001110000000000001
Q ss_pred HHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHh----cCCCCEEEeccccccC
Q 039378 417 LLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFK----EGTCPLMVATDVAARG 492 (600)
Q Consensus 417 l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~----~g~~~vLvaT~~~~~G 492 (600)
.......- -..+.+++|.|||+..|..++..|+..+.+++.+||.+...+|.+.++... .+...|+|||.+.+.|
T Consensus 429 ~~~~~~~~-~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEag 507 (733)
T COG1203 429 LIELISEE-VKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAG 507 (733)
T ss_pred hhhcchhh-hccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEE
Confidence 11111111 134689999999999999999999998778999999999999998888654 4677899999999999
Q ss_pred CCCCCcCEEEEcCCCCChhhHHHHhhhccCCC--CccEEEEEEcCCcHh
Q 039378 493 LDIPDVEVVINYSFPLTTEDYVHRIGRTGRAG--KKGVSHTFFTNHNKA 539 (600)
Q Consensus 493 ldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g--~~g~~~~~~~~~d~~ 539 (600)
+|+ +.+++|-=-.| +...+||+||++|.| ..|.++.+.......
T Consensus 508 vDi-dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~ 553 (733)
T COG1203 508 VDI-DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERGP 553 (733)
T ss_pred ecc-ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCCC
Confidence 999 57777754444 468999999999999 567777776655433
No 117
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.91 E-value=4e-23 Score=202.48 Aligned_cols=137 Identities=15% Similarity=0.267 Sum_probs=109.2
Q ss_pred chHHHHHHHHHHHhhcC-CCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC-CCC-EEEeccc
Q 039378 412 SRDQRLLALLEKYHKSQ-RNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEG-TCP-LMVATDV 488 (600)
Q Consensus 412 ~~~~~l~~~l~~~~~~~-~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g-~~~-vLvaT~~ 488 (600)
.+...|.+-+..+.... .-+.|||.+...+++.+...|.+.|+.+.-+.|+|++..|..+++.|.+. .++ +|++-.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 34455555555554432 34899999999999999999999999999999999999999999999876 455 5666799
Q ss_pred cccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCcc--EEEEEEcCCcHhHHHHHHHHHHH
Q 039378 489 AARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKG--VSHTFFTNHNKALAGELVNVLRE 550 (600)
Q Consensus 489 ~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g--~~~~~~~~~d~~~~~~i~~~l~~ 550 (600)
.+..||+..+.+|+.+|++||++.-+|...|.+|+||.. .++.|+-.+. +-..|++.-..
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns--iE~kIieLQeK 761 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS--IEEKIIELQEK 761 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc--HHHHHHHHHHH
Confidence 999999999999999999999999999999999999854 4555554443 33445444433
No 118
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.91 E-value=4.8e-23 Score=218.58 Aligned_cols=128 Identities=20% Similarity=0.321 Sum_probs=113.8
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCC--CCEEEecc
Q 039378 410 DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT--CPLMVATD 487 (600)
Q Consensus 410 ~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~--~~vLvaT~ 487 (600)
++.+.+.|.-+|+++.. .++++|||++...+++.|..+|...|+-++.|.|.+..++|+..+++|+... +++|++|.
T Consensus 1258 DcGKLQtLAiLLqQLk~-eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTr 1336 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKS-EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTR 1336 (1958)
T ss_pred ccchHHHHHHHHHHHHh-cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEecc
Confidence 56788888888887754 5899999999999999999999999999999999999999999999999764 56899999
Q ss_pred ccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcH
Q 039378 488 VAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNK 538 (600)
Q Consensus 488 ~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~ 538 (600)
..+.|||+.+++.||+||..||+....|...||+|+|+...+++|-...+.
T Consensus 1337 SggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1337 SGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred CCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 999999999999999999999999999999999999998766555444333
No 119
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.90 E-value=2.1e-21 Score=206.39 Aligned_cols=279 Identities=26% Similarity=0.384 Sum_probs=192.6
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
|| .|+..|+.-...+..|+.+-+.||||.|||.- .+.+-..+... +.+++||+||+.|+.|+++.+..
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a~k----------gkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLAKK----------GKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHHhc----------CCeEEEEecCHHHHHHHHHHHHH
Confidence 55 89999999999999999999999999999974 33222222221 34489999999999999999999
Q ss_pred hcCCCC-ceEEEEeCCCChH----HHHHHHhc-CCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcC-------
Q 039378 277 AGKPCG-VKSVCVYGGTSKQ----PQITALRS-GVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM------- 343 (600)
Q Consensus 277 ~~~~~~-~~~~~~~~g~~~~----~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~------- 343 (600)
++...+ ..+.++|++.-.. +....+.+ +.+|+|+|..-|...... +.--+|++|++|.+|.++-.
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNvDri 225 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNVDRL 225 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccHHHH
Confidence 886655 4444446665322 22333443 599999999887665542 11247899999999987642
Q ss_pred ----CChHH-------HHHHHHhc------------------------CcCCcEEEEeccCChhH--HHHHHHhcCCCCe
Q 039378 344 ----GFEEP-------VRFILSKI------------------------SLARQMVMFSATWPIEV--HKLAEEYMDPNPV 386 (600)
Q Consensus 344 ----~~~~~-------~~~il~~~------------------------~~~~q~i~~SATl~~~~--~~~~~~~~~~~~~ 386 (600)
||... +..+...+ ....++++.|||..+.- ..+.+..++-.+
T Consensus 226 L~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFev- 304 (1187)
T COG1110 226 LRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEV- 304 (1187)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCcc-
Confidence 23221 01111111 12247899999976532 234444443222
Q ss_pred EEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEee---hhcHHHHHHHHHhCCCeEEEEcCCC
Q 039378 387 KVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALY---QLEADRLENMLRRSGWKVVAIHGKK 463 (600)
Q Consensus 387 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s---~~~~~~l~~~L~~~~~~~~~l~~~~ 463 (600)
+.... ...++...+ ........+..++..+ +...|||++. .+.++.++++|+..|+++..+|+.
T Consensus 305 ----G~~~~-~LRNIvD~y---~~~~~~e~~~elvk~l----G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~- 371 (1187)
T COG1110 305 ----GSGGE-GLRNIVDIY---VESESLEKVVELVKKL----GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE- 371 (1187)
T ss_pred ----Cccch-hhhheeeee---ccCccHHHHHHHHHHh----CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-
Confidence 21111 111222222 2224566677777776 5688999999 999999999999999999999984
Q ss_pred CHHHHHHHHHHHhcCCCCEEEec----cccccCCCCCC-cCEEEEcCCC
Q 039378 464 AQHERTKSLSLFKEGTCPLMVAT----DVAARGLDIPD-VEVVINYSFP 507 (600)
Q Consensus 464 ~~~~r~~~~~~F~~g~~~vLvaT----~~~~~Gldi~~-v~~VI~~d~p 507 (600)
....++.|..|++.+||.. .++-||||+|. ++++|+|+.|
T Consensus 372 ----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 372 ----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 3778999999999999876 47789999996 7899999877
No 120
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.90 E-value=3.9e-22 Score=215.43 Aligned_cols=317 Identities=19% Similarity=0.236 Sum_probs=218.6
Q ss_pred cHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh-cCC
Q 039378 202 SPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA-GKP 280 (600)
Q Consensus 202 ~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~-~~~ 280 (600)
+..+.+.+..+.+.+.++++|+||+|||.+.---++....... ....+++..|+|--|..+++++..- +..
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--------~~~~IicTQPRRIsAIsvAeRVa~ER~~~ 246 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--------AACNIICTQPRRISAISVAERVAKERGES 246 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--------CCCeEEecCCchHHHHHHHHHHHHHhccc
Confidence 3557777888888889999999999999953333344444433 1334788889998888888877653 334
Q ss_pred CCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhc-CCChHHHHHHHHhcCcC
Q 039378 281 CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLD-MGFEEPVRFILSKISLA 359 (600)
Q Consensus 281 ~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~-~~~~~~~~~il~~~~~~ 359 (600)
.|-.+..-.+....... ...+++||.|.|++.+.. .-.+..+..||+||+|.-.. .+|.-.+...+-...+.
T Consensus 247 ~g~~VGYqvrl~~~~s~------~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~ 319 (924)
T KOG0920|consen 247 LGEEVGYQVRLESKRSR------ETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPD 319 (924)
T ss_pred cCCeeeEEEeeecccCC------ceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCC
Confidence 44344443333332221 258999999999999876 44688999999999997643 33444343334444567
Q ss_pred CcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccC---------------CCeeEE------------EEEecCcc
Q 039378 360 RQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAAN---------------HDVMQI------------VEVLDDRS 412 (600)
Q Consensus 360 ~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------~~~~~~------------~~~~~~~~ 412 (600)
.++|+||||+. .+....|+...|+....+.. .... ....++ .......-
T Consensus 320 LkvILMSAT~d---ae~fs~YF~~~pvi~i~grt-fpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 395 (924)
T KOG0920|consen 320 LKVILMSATLD---AELFSDYFGGCPVITIPGRT-FPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEI 395 (924)
T ss_pred ceEEEeeeecc---hHHHHHHhCCCceEeecCCC-cchHHHHHHHHHHHhcccccccccccccccCccccccchhccccc
Confidence 79999999988 44556677555544433321 1100 000000 00001111
Q ss_pred hHHHHHHHHHHHhh-cCCCeEEEEEeehhcHHHHHHHHHhC-------CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEE
Q 039378 413 RDQRLLALLEKYHK-SQRNRVLVFALYQLEADRLENMLRRS-------GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMV 484 (600)
Q Consensus 413 ~~~~l~~~l~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLv 484 (600)
....+..++..+.. ...+.+|||.++..++..+...|... .+-+.++|+.|+..+++.++.....|..+|++
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIl 475 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIIL 475 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhh
Confidence 22333444444433 33689999999999999999999642 25688999999999999999999999999999
Q ss_pred eccccccCCCCCCcCEEEE--------cCCC----------CChhhHHHHhhhccCCCCccEEEEEEcCCcH
Q 039378 485 ATDVAARGLDIPDVEVVIN--------YSFP----------LTTEDYVHRIGRTGRAGKKGVSHTFFTNHNK 538 (600)
Q Consensus 485 aT~~~~~Gldi~~v~~VI~--------~d~p----------~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~ 538 (600)
+|++++.+|.|++|-+||+ ||+- -+.+.-.||.|||||. ++|.||.+|+....
T Consensus 476 aTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 476 ATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRY 546 (924)
T ss_pred hhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhh
Confidence 9999999999999999996 4442 3445667999999998 59999999987643
No 121
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.89 E-value=6.6e-21 Score=192.73 Aligned_cols=294 Identities=23% Similarity=0.295 Sum_probs=220.7
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhcCCC-Cce----EEEEeC--------------CCChHHHHHHHhc----------
Q 039378 253 VNPLCLVLSPTRELADQIYDVLNDAGKPC-GVK----SVCVYG--------------GTSKQPQITALRS---------- 303 (600)
Q Consensus 253 ~~~~~liv~Ptr~La~q~~~~~~~~~~~~-~~~----~~~~~~--------------g~~~~~~~~~l~~---------- 303 (600)
.+|+||||+|+|..|.++.+.+..+.... .+. ...-+| ....+..+..+..
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 47999999999999999999998876551 100 000011 1122233333322
Q ss_pred ---------------CCcEEEEchHHHHHHHHc------cCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcC---
Q 039378 304 ---------------GVDIVIGTPGRLIDLIEM------NVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA--- 359 (600)
Q Consensus 304 ---------------~~~Iiv~Tp~~l~~~l~~------~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~--- 359 (600)
.+|||||+|-.|...+.. ...+|+++.++|+|.||.|+.++| .++..++..+...
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW-~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNW-EHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhH-HHHHHHHHHhccCCCC
Confidence 289999999999988874 356799999999999999988765 4455555544321
Q ss_pred ---------------------CcEEEEeccCChhHHHHHHHhcCCCCeEEEECCccc------ccCCCeeEEEEEecCcc
Q 039378 360 ---------------------RQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDL------AANHDVMQIVEVLDDRS 412 (600)
Q Consensus 360 ---------------------~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~ 412 (600)
+|+|++|+..++++..+....+.+....+.+..... .....+.|.+...+..+
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 599999999999999999987766555544433221 23344556666554332
Q ss_pred ----hHHHHHH----HHHHHh-hcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEE
Q 039378 413 ----RDQRLLA----LLEKYH-KSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLM 483 (600)
Q Consensus 413 ----~~~~l~~----~l~~~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vL 483 (600)
....+.. ++-.+. ....+++|||++|.-+..+|.++|+..++.++.+|.++++.+..++...|..|+..||
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 1222222 333344 4456799999999999999999999999999999999999999999999999999999
Q ss_pred Eeccccc--cCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCC------ccEEEEEEcCCcHhHHHHHHHH
Q 039378 484 VATDVAA--RGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGK------KGVSHTFFTNHNKALAGELVNV 547 (600)
Q Consensus 484 vaT~~~~--~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~------~g~~~~~~~~~d~~~~~~i~~~ 547 (600)
+.|..+. +...|.++++||+|.+|..+..|...++..+.... ...|.++|+..|...+++|+.-
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCH
Confidence 9998765 88999999999999999999999998876665443 5799999999999888887654
No 122
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=9.5e-23 Score=215.46 Aligned_cols=324 Identities=17% Similarity=0.238 Sum_probs=215.8
Q ss_pred CCCcHHHHHHhhhhh---cCC-cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHH
Q 039378 199 KNPSPIQSHAWPFLL---NGR-DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il---~~~-d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~ 274 (600)
.++.+||..++.|+. +++ +.|++.+||.|||.+ .|.++.+++..... .||+ |||+|+..| ..|..+|
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~------~GP~-LvivPlstL-~NW~~Ef 463 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQM------QGPF-LIIVPLSTL-VNWSSEF 463 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHccc------CCCe-EEecccccc-CCchhhc
Confidence 378899999999976 333 799999999999998 56677787776432 2444 899999888 5678888
Q ss_pred HHhcCCCCceEEEEeCCCChHHHH--HHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHH
Q 039378 275 NDAGKPCGVKSVCVYGGTSKQPQI--TALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFI 352 (600)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~--~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~i 352 (600)
..|.+. +..+...|....+..+ ......++|+++|++.+.. .+..+.--+|.++||||.|+|.+ +...+...
T Consensus 464 ~kWaPS--v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKN--a~~KLt~~ 537 (1157)
T KOG0386|consen 464 PKWAPS--VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKN--AICKLTDT 537 (1157)
T ss_pred cccccc--eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccc--hhhHHHHH
Confidence 888753 4444444433322221 1122458999999998765 11122334678999999999987 34445555
Q ss_pred HHhcCcCCcEEEEeccC---------------------------------------------------------------
Q 039378 353 LSKISLARQMVMFSATW--------------------------------------------------------------- 369 (600)
Q Consensus 353 l~~~~~~~q~i~~SATl--------------------------------------------------------------- 369 (600)
++........+++++|+
T Consensus 538 L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFl 617 (1157)
T KOG0386|consen 538 LNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFL 617 (1157)
T ss_pred hhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHH
Confidence 55444445566666661
Q ss_pred ------------ChhHHHHHHHhc-----------CCCCeEEEEC---Cccc-ccCCCeeEEE-----------------
Q 039378 370 ------------PIEVHKLAEEYM-----------DPNPVKVVVG---SEDL-AANHDVMQIV----------------- 405 (600)
Q Consensus 370 ------------~~~~~~~~~~~~-----------~~~~~~i~~~---~~~~-~~~~~~~~~~----------------- 405 (600)
|..+...++.-+ ...+....-+ .... ...+.+++..
T Consensus 618 LRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~ 697 (1157)
T KOG0386|consen 618 LRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYT 697 (1157)
T ss_pred HHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccc
Confidence 111111111000 0000000000 0000 0000000000
Q ss_pred ------EEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q 039378 406 ------EVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT 479 (600)
Q Consensus 406 ------~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~ 479 (600)
..+....+...+-.++-.+. ..++++|.||......+.+..+|.-.++.+..+.|.+...+|-..++.|+.-.
T Consensus 698 ~~~~~~dL~R~sGKfELLDRiLPKLk-atgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pd 776 (1157)
T KOG0386|consen 698 LHYDIKDLVRVSGKFELLDRILPKLK-ATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPD 776 (1157)
T ss_pred cccChhHHHHhccHHHHHHhhhHHHH-hcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCC
Confidence 00111223333333444433 34799999999999999999999999999999999999999999999998654
Q ss_pred ---CCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcH
Q 039378 480 ---CPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNK 538 (600)
Q Consensus 480 ---~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~ 538 (600)
+.+|++|.+.+.|+|+..++.||.||..|+|..+.|+..|++|+|+...+.++....-.
T Consensus 777 s~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~ 838 (1157)
T KOG0386|consen 777 SPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVN 838 (1157)
T ss_pred CceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhh
Confidence 45899999999999999999999999999999999999999999998877776654433
No 123
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=4.2e-21 Score=207.76 Aligned_cols=134 Identities=22% Similarity=0.365 Sum_probs=118.2
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecccccc
Q 039378 412 SRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAAR 491 (600)
Q Consensus 412 ~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~ 491 (600)
.....++..+..+.. .+.++||||+++..+..|+..|...|+.+..+||++++.+|..++..|+.|.+.|||||+++++
T Consensus 426 ~qi~~Ll~eI~~~~~-~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 426 GQVDDLLSEIRQRVA-RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred chHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 344555555555433 3679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCEEEEcC-----CCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHH
Q 039378 492 GLDIPDVEVVINYS-----FPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNV 547 (600)
Q Consensus 492 Gldi~~v~~VI~~d-----~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~ 547 (600)
|+|+|++++||++| .|.+..+|+||+|||||. ..|.+++|++..+..+...|.+.
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 99999999999988 799999999999999998 58999999998877666655554
No 124
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.88 E-value=1.1e-20 Score=213.64 Aligned_cols=324 Identities=15% Similarity=0.174 Sum_probs=200.1
Q ss_pred CCCCCcHHHHHHhh----hhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWP----FLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYD 272 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~----~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~ 272 (600)
||. ++|.|.+.+. .+..++++++.||||+|||++|++|++.... . +.+++|.+||++|..|+..
T Consensus 243 ~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~----------~~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 243 GLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T----------EKPVVISTNTKVLQSQLLE 310 (850)
T ss_pred CCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C----------CCeEEEEeCcHHHHHHHHH
Confidence 665 7899998666 5557789999999999999999999987654 1 2248999999999999865
Q ss_pred -HHHHhcCCCC--ceEEEEeCCCChH---------------HH--------------------------------HH---
Q 039378 273 -VLNDAGKPCG--VKSVCVYGGTSKQ---------------PQ--------------------------------IT--- 299 (600)
Q Consensus 273 -~~~~~~~~~~--~~~~~~~~g~~~~---------------~~--------------------------------~~--- 299 (600)
.+..+...++ ++++.+.|+.+.- .. +.
T Consensus 311 ~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~ 390 (850)
T TIGR01407 311 KDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQVR 390 (850)
T ss_pred HHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHhh
Confidence 4554443333 6666666654310 00 00
Q ss_pred ---------------------HHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCC-------C-----h
Q 039378 300 ---------------------ALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMG-------F-----E 346 (600)
Q Consensus 300 ---------------------~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~-------~-----~ 346 (600)
.....++||||++..|...+......+....++||||||++.+.. + .
T Consensus 391 ~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~~~~ 470 (850)
T TIGR01407 391 HDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDYADIK 470 (850)
T ss_pred cCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCHHHHH
Confidence 001127999999999888764433335566899999999875310 0 0
Q ss_pred HH-------------------------------------------------------------HHH---HHHh-------
Q 039378 347 EP-------------------------------------------------------------VRF---ILSK------- 355 (600)
Q Consensus 347 ~~-------------------------------------------------------------~~~---il~~------- 355 (600)
.. ... .+..
T Consensus 471 ~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 550 (850)
T TIGR01407 471 YQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDDFKN 550 (850)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 00 000 0000
Q ss_pred --------------c---------------------------CcCCcEEEEeccCChh-HHHHHHHhcCCCCe-EEEECC
Q 039378 356 --------------I---------------------------SLARQMVMFSATWPIE-VHKLAEEYMDPNPV-KVVVGS 392 (600)
Q Consensus 356 --------------~---------------------------~~~~q~i~~SATl~~~-~~~~~~~~~~~~~~-~i~~~~ 392 (600)
. +....+|++|||++.. -.......++.... ......
T Consensus 551 l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~ 630 (850)
T TIGR01407 551 IEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEP 630 (850)
T ss_pred HHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccceecC
Confidence 0 0013578999999742 12333333332211 111111
Q ss_pred cccccCCCeeEEEEEe--c------CcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHh----CCCeEEEEc
Q 039378 393 EDLAANHDVMQIVEVL--D------DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRR----SGWKVVAIH 460 (600)
Q Consensus 393 ~~~~~~~~~~~~~~~~--~------~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~ 460 (600)
....... -...+... . .......+...+..+....++++|||++|...++.++..|.. .++. .+.
T Consensus 631 spf~~~~-~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~ 707 (850)
T TIGR01407 631 TPLNYAE-NQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLA 707 (850)
T ss_pred CCCCHHH-cCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEe
Confidence 1111001 11111111 1 111223444455555455578999999999999999999975 2333 333
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcC--EEEEcCCCCC-----------------------------
Q 039378 461 GKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVE--VVINYSFPLT----------------------------- 509 (600)
Q Consensus 461 ~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~--~VI~~d~p~s----------------------------- 509 (600)
.+.. ..|..+++.|+.|...||++|+.+++|||+|+.. .||+..+|..
T Consensus 708 q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~ 786 (850)
T TIGR01407 708 QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPM 786 (850)
T ss_pred cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHH
Confidence 3333 5789999999999999999999999999999876 4677666631
Q ss_pred -hhhHHHHhhhccCCCCccEEEEEEcCC
Q 039378 510 -TEDYVHRIGRTGRAGKKGVSHTFFTNH 536 (600)
Q Consensus 510 -~~~y~qr~GR~gR~g~~g~~~~~~~~~ 536 (600)
...+.|.+||.-|.....-++++++.+
T Consensus 787 A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 787 AIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred HHHHHHHhhccccccCCceEEEEEEccc
Confidence 122358899999987655566666554
No 125
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=8.6e-21 Score=199.54 Aligned_cols=317 Identities=19% Similarity=0.207 Sum_probs=221.3
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+++|..+.-.++.|+ |+.+.||.|||+++.+|++...+.... |.|++|+-.||.|-++++..+..
T Consensus 78 r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~-----------VhvvT~NdyLA~RDae~m~~ly~ 144 (764)
T PRK12326 78 RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRR-----------VHVITVNDYLARRDAEWMGPLYE 144 (764)
T ss_pred CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCC-----------eEEEcCCHHHHHHHHHHHHHHHH
Confidence 68899999999998875 788999999999999998887766543 78999999999999999999999
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHH-HHHHHcc------CCCccceEEEEEcccchhhcC---------
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL-IDLIEMN------VCHLSEVSFVVLDEADRMLDM--------- 343 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~~~~lViDEah~l~~~--------- 343 (600)
.+|+++.++.++.......... .|||+++|..-| .++++.+ ......+.+.||||+|.++-.
T Consensus 145 ~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiIS 222 (764)
T PRK12326 145 ALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLA 222 (764)
T ss_pred hcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeee
Confidence 9999999998877655443333 489999998765 2333322 223466899999999976410
Q ss_pred ------CChHHHHHHHHhcCcC----------------------------------------------------------
Q 039378 344 ------GFEEPVRFILSKISLA---------------------------------------------------------- 359 (600)
Q Consensus 344 ------~~~~~~~~il~~~~~~---------------------------------------------------------- 359 (600)
.....+..+...+...
T Consensus 223 g~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~ 302 (764)
T PRK12326 223 GSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDV 302 (764)
T ss_pred CCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCC
Confidence 0000111111111000
Q ss_pred ------------------------------------------------------------CcEEEEeccCChhHHHHHHH
Q 039378 360 ------------------------------------------------------------RQMVMFSATWPIEVHKLAEE 379 (600)
Q Consensus 360 ------------------------------------------------------------~q~i~~SATl~~~~~~~~~~ 379 (600)
..+.+||+|.......+...
T Consensus 303 dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~i 382 (764)
T PRK12326 303 HYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQF 382 (764)
T ss_pred cEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHH
Confidence 24567777776555544443
Q ss_pred hcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEE
Q 039378 380 YMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAI 459 (600)
Q Consensus 380 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l 459 (600)
|- . . ++.+.+........... ..+.....+...+..-+..+.. .+.|+||.|.|+...+.|+..|...|++...|
T Consensus 383 Y~-l-~-Vv~IPtnkp~~R~d~~d-~iy~t~~~k~~Aii~ei~~~~~-~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vL 457 (764)
T PRK12326 383 YD-L-G-VSVIPPNKPNIREDEAD-RVYATAAEKNDAIVEHIAEVHE-TGQPVLVGTHDVAESEELAERLRAAGVPAVVL 457 (764)
T ss_pred hC-C-c-EEECCCCCCceeecCCC-ceEeCHHHHHHHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHhCCCcceee
Confidence 32 1 2 22222221111111111 1222334556666666555543 47899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCC-CCEEEeccccccCCCCCC---------------cCEEEEcCCCCChhhHHHHhhhccCC
Q 039378 460 HGKKAQHERTKSLSLFKEGT-CPLMVATDVAARGLDIPD---------------VEVVINYSFPLTTEDYVHRIGRTGRA 523 (600)
Q Consensus 460 ~~~~~~~~r~~~~~~F~~g~-~~vLvaT~~~~~Gldi~~---------------v~~VI~~d~p~s~~~y~qr~GR~gR~ 523 (600)
++.-...+ ..++. ..|+ -.|-|||++++||.||.= ==|||-...+.|...-.|-.||+||.
T Consensus 458 NAk~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQ 534 (764)
T PRK12326 458 NAKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQ 534 (764)
T ss_pred ccCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccC
Confidence 98744333 22222 2353 349999999999999962 12799899999999999999999999
Q ss_pred CCccEEEEEEcCCcHh
Q 039378 524 GKKGVSHTFFTNHNKA 539 (600)
Q Consensus 524 g~~g~~~~~~~~~d~~ 539 (600)
|.+|.+..|++-+|.-
T Consensus 535 GDpGss~f~lSleDdl 550 (764)
T PRK12326 535 GDPGSSVFFVSLEDDV 550 (764)
T ss_pred CCCCceeEEEEcchhH
Confidence 9999999999988754
No 126
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.88 E-value=8.4e-21 Score=207.19 Aligned_cols=147 Identities=24% Similarity=0.341 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccC
Q 039378 413 RDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARG 492 (600)
Q Consensus 413 ~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~G 492 (600)
....++..+..+.. .+.++||||++...++.|+..|...|+++..+||++++.+|..++..|+.|.+.|||||+++++|
T Consensus 431 q~~~L~~~L~~~~~-~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 431 QVDDLLSEIRKRVA-KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred cHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 34555555655443 46799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCEEEEcCC-----CCChhhHHHHhhhccCCCCccEEEEEEcCC---------cHhHHHHHHHHHHHhcCCCcHH
Q 039378 493 LDIPDVEVVINYSF-----PLTTEDYVHRIGRTGRAGKKGVSHTFFTNH---------NKALAGELVNVLREARQVVPDA 558 (600)
Q Consensus 493 ldi~~v~~VI~~d~-----p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~---------d~~~~~~i~~~l~~~~~~ip~~ 558 (600)
+|+|++++||++|. |.+...|+||+||+||. ..|.|++|++.. +....+.+...+......+|..
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 588 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKT 588 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChh
Confidence 99999999999885 78999999999999996 689999999954 4455566666677777778877
Q ss_pred HHh
Q 039378 559 LLK 561 (600)
Q Consensus 559 l~~ 561 (600)
..+
T Consensus 589 ~~~ 591 (652)
T PRK05298 589 IKK 591 (652)
T ss_pred HHH
Confidence 643
No 127
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=3e-21 Score=191.18 Aligned_cols=349 Identities=20% Similarity=0.269 Sum_probs=244.4
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEE-ecCCCCc--hhHhhHHHHHHHHhcccCccCCC--------------------CCCc
Q 039378 199 KNPSPIQSHAWPFLLNGRDFIGI-AKTGSGK--TIAFGVPAMMHVLSNRKGKAVGK--------------------RVNP 255 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~~d~i~~-a~TGsGK--T~~~~lp~l~~~~~~~~~~~~~~--------------------~~~~ 255 (600)
.-+|+.|.+.+..+.+.+|++.. ...+.|+ +-.|++++++|+++.+.....++ -.+|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 36899999999999999998764 3335565 55799999999987643211110 1378
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCCCCc-e--------EEEEeCC--------CChHHHHHHHh----------------
Q 039378 256 LCLVLSPTRELADQIYDVLNDAGKPCGV-K--------SVCVYGG--------TSKQPQITALR---------------- 302 (600)
Q Consensus 256 ~~liv~Ptr~La~q~~~~~~~~~~~~~~-~--------~~~~~~g--------~~~~~~~~~l~---------------- 302 (600)
+||||||+|+-|..+.+.+..+..+..- + ...-|+| ...+.....+.
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999999998887433211 0 0111222 11122222221
Q ss_pred ---------cCCcEEEEchHHHHHHHHc------cCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcC--------
Q 039378 303 ---------SGVDIVIGTPGRLIDLIEM------NVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA-------- 359 (600)
Q Consensus 303 ---------~~~~Iiv~Tp~~l~~~l~~------~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~-------- 359 (600)
...||+||+|-.|..++.. ....|+++.++|||.||.|+.++| ..+..++.++...
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCCC
Confidence 2389999999999888862 245689999999999999998876 3455565555322
Q ss_pred ----------------CcEEEEeccCChhHHHHHHHhcCCCCeEEEECCccc-----ccCCCeeEEEEEec----CcchH
Q 039378 360 ----------------RQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDL-----AANHDVMQIVEVLD----DRSRD 414 (600)
Q Consensus 360 ----------------~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~----~~~~~ 414 (600)
+|+++||+--.+....+...++.+....+....... .....+.|.+.... .....
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 489999999888888888877755444443322110 01111112211111 12233
Q ss_pred HHHHHHHHHHh----hcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccc
Q 039378 415 QRLLALLEKYH----KSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAA 490 (600)
Q Consensus 415 ~~l~~~l~~~~----~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~ 490 (600)
..+..+...+. +.....+|||.++.-+..++.++|+...+.+..+|.+.+..+-.++.+.|-.|...||+.|..+.
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~h 613 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAH 613 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhh
Confidence 34444444433 33345679999999999999999999999999999999999999999999999999999998765
Q ss_pred --cCCCCCCcCEEEEcCCCCChhhHHHH---hhhccCCC----CccEEEEEEcCCcHhHHHHHHHHH
Q 039378 491 --RGLDIPDVEVVINYSFPLTTEDYVHR---IGRTGRAG----KKGVSHTFFTNHNKALAGELVNVL 548 (600)
Q Consensus 491 --~Gldi~~v~~VI~~d~p~s~~~y~qr---~GR~gR~g----~~g~~~~~~~~~d~~~~~~i~~~l 548 (600)
+..+|.+|+.||+|.+|.+|..|.-. ++|+.-.| ..-.|.++|+.-|.-.+..|+..-
T Consensus 614 ffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGte 680 (698)
T KOG2340|consen 614 FFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGTE 680 (698)
T ss_pred hhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhHH
Confidence 88999999999999999999988654 45554333 235889999999988777776543
No 128
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.87 E-value=1.2e-20 Score=197.81 Aligned_cols=298 Identities=19% Similarity=0.218 Sum_probs=195.6
Q ss_pred CCCcHHHHHHhhhhh----cCC-cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHH
Q 039378 199 KNPSPIQSHAWPFLL----NGR-DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDV 273 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il----~~~-d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~ 273 (600)
..|+++|..||..+. +|+ .+++++.||+|||.. .+.++.++++... ..++|+|+-++.|+.|.+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~~~--------~KRVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKSGW--------VKRVLFLADRNALVDQAYGA 234 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhcch--------hheeeEEechHHHHHHHHHH
Confidence 368899999997755 444 599999999999997 5667777777644 33489999999999999999
Q ss_pred HHHhcCCCC-ceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc-----CCCccceEEEEEcccchhhcCCChH
Q 039378 274 LNDAGKPCG-VKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN-----VCHLSEVSFVVLDEADRMLDMGFEE 347 (600)
Q Consensus 274 ~~~~~~~~~-~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-----~~~l~~~~~lViDEah~l~~~~~~~ 347 (600)
+..+.+... +..+.-..+.. .+.|.|+|+..+...+... .+....|++|||||||+=.- .
T Consensus 235 f~~~~P~~~~~n~i~~~~~~~----------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~----~ 300 (875)
T COG4096 235 FEDFLPFGTKMNKIEDKKGDT----------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY----S 300 (875)
T ss_pred HHHhCCCccceeeeecccCCc----------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH----h
Confidence 998876532 22222222221 2799999999998877643 34456699999999998543 3
Q ss_pred HHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEE------------------EC----CcccccCCC-----
Q 039378 348 PVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVV------------------VG----SEDLAANHD----- 400 (600)
Q Consensus 348 ~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~------------------~~----~~~~~~~~~----- 400 (600)
....|+..+... +++++||+...+..-.-.|+...|.... +. .........
T Consensus 301 ~~~~I~dYFdA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek 378 (875)
T COG4096 301 EWSSILDYFDAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREK 378 (875)
T ss_pred hhHHHHHHHHHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhh
Confidence 334565555433 3444898765444333333322222211 10 000000000
Q ss_pred -----e---eEEEEE------ecCcchHHHHHHHHHHHhhc---C--CCeEEEEEeehhcHHHHHHHHHhCC-----CeE
Q 039378 401 -----V---MQIVEV------LDDRSRDQRLLALLEKYHKS---Q--RNRVLVFALYQLEADRLENMLRRSG-----WKV 456 (600)
Q Consensus 401 -----~---~~~~~~------~~~~~~~~~l~~~l~~~~~~---~--~~~~lVF~~s~~~~~~l~~~L~~~~-----~~~ 456 (600)
+ .+.+.. .........+...+..+... . .+++||||.+..+|+++...|.... --+
T Consensus 379 ~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a 458 (875)
T COG4096 379 LQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYA 458 (875)
T ss_pred hhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceE
Confidence 0 000000 00112233444444444332 1 4689999999999999999998652 346
Q ss_pred EEEcCCCCHHHHHHHHHHHhc--CCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCC
Q 039378 457 VAIHGKKAQHERTKSLSLFKE--GTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRA 523 (600)
Q Consensus 457 ~~l~~~~~~~~r~~~~~~F~~--g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~ 523 (600)
..+.|...+.+ ..+..|.. .-.+|.|+.+++..|+|+|.|..+|++..-.|..-|.||+||+-|.
T Consensus 459 ~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 459 MKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred EEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 67777765444 34666654 3355888889999999999999999999999999999999999984
No 129
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=1.6e-20 Score=184.23 Aligned_cols=327 Identities=21% Similarity=0.247 Sum_probs=211.7
Q ss_pred ccccccccCCCCHHHHHhhcC-CCCCcHHHHHHh-hhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCC
Q 039378 177 KALKSFTESKLPDDVLGCCKN-FKNPSPIQSHAW-PFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN 254 (600)
Q Consensus 177 ~~~~~~~~~~l~~~l~~~~~~-~~~~~~~Q~~~i-~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~ 254 (600)
+.++.|...+.+++..+.++. -.-|-=-|+.-+ ..+.+++-+++.|+||||||.+ +|.+.........
T Consensus 22 k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq~~~~~~~~~~-------- 91 (699)
T KOG0925|consen 22 KAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQFVLEYELSHL-------- 91 (699)
T ss_pred hhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCcccc--CcHHHHHHHHhhc--------
Confidence 347888899999988887763 223333344444 4555667788999999999984 5543332222211
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcC-CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEE
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGK-PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVV 333 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 333 (600)
..+....|.|..|.++..+...... ..|-.+...+...+-...... .-+||.++|++..-.+. .+.++++||
T Consensus 92 ~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~------Lky~tDgmLlrEams~p-~l~~y~vii 164 (699)
T KOG0925|consen 92 TGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTL------LKYCTDGMLLREAMSDP-LLGRYGVII 164 (699)
T ss_pred cceeecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHH------HHHhcchHHHHHHhhCc-ccccccEEE
Confidence 1257778999999999887765432 222222222221111111111 22678888877665544 488999999
Q ss_pred EcccchhhcCCChHHH----HHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEec
Q 039378 334 LDEADRMLDMGFEEPV----RFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD 409 (600)
Q Consensus 334 iDEah~l~~~~~~~~~----~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 409 (600)
+||||.-.- -.+.+ ..++.. ++..++|+||||+-. .-...|+.+.|+.-+.+ ...+..++....
T Consensus 165 LDeahERtl--ATDiLmGllk~v~~~-rpdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg------~~PvEi~Yt~e~ 232 (699)
T KOG0925|consen 165 LDEAHERTL--ATDILMGLLKEVVRN-RPDLKLVVMSATLDA---EKFQRYFGNAPLLAVPG------THPVEIFYTPEP 232 (699)
T ss_pred echhhhhhH--HHHHHHHHHHHHHhh-CCCceEEEeecccch---HHHHHHhCCCCeeecCC------CCceEEEecCCC
Confidence 999996431 11222 222222 246789999999763 33456774555544332 122333443334
Q ss_pred CcchHHHH-HHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC---------CCeEEEEcCCCCHHHHHHHHHHHhc--
Q 039378 410 DRSRDQRL-LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS---------GWKVVAIHGKKAQHERTKSLSLFKE-- 477 (600)
Q Consensus 410 ~~~~~~~l-~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~l~~~~~~~~r~~~~~~F~~-- 477 (600)
..+..... ..+++.+.....|.+|||..+.++.+..++.+... .+.+.++| +.+++++++.-..
T Consensus 233 erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~ 308 (699)
T KOG0925|consen 233 ERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKR 308 (699)
T ss_pred ChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCccc
Confidence 44444443 34455555566889999999999999888887632 25688888 5566666655432
Q ss_pred -C--CCCEEEeccccccCCCCCCcCEEEEcCC------------------CCChhhHHHHhhhccCCCCccEEEEEEcCC
Q 039378 478 -G--TCPLMVATDVAARGLDIPDVEVVINYSF------------------PLTTEDYVHRIGRTGRAGKKGVSHTFFTNH 536 (600)
Q Consensus 478 -g--~~~vLvaT~~~~~Gldi~~v~~VI~~d~------------------p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~ 536 (600)
| ..+|+|+|++++..+.|+++.+||.-++ |.|..+-.||.||+||. ++|.|+.+|+..
T Consensus 309 ~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 309 NGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred CCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 2 3579999999999999999999997443 77888889999999998 599999999975
Q ss_pred c
Q 039378 537 N 537 (600)
Q Consensus 537 d 537 (600)
-
T Consensus 388 ~ 388 (699)
T KOG0925|consen 388 A 388 (699)
T ss_pred h
Confidence 3
No 130
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=5.1e-20 Score=198.52 Aligned_cols=330 Identities=20% Similarity=0.240 Sum_probs=223.0
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 199 KNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
-.|+++|..+--.+..|+ |+.+.||.|||+++.+|++...+.... |.||+|+-.||.|-++++..+.
T Consensus 81 m~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G~~-----------VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSGKG-----------VHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred CCcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcCCC-----------EEEEeCCHHHHHHHHHHHHHHh
Confidence 368889988877776654 889999999999999999887776543 7899999999999999999999
Q ss_pred CCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHH-HHHHHccC------CCccceEEEEEcccchhhcC--------
Q 039378 279 KPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL-IDLIEMNV------CHLSEVSFVVLDEADRMLDM-------- 343 (600)
Q Consensus 279 ~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~------~~l~~~~~lViDEah~l~~~-------- 343 (600)
..+|+++.++.++........... ++|+++|..-| .++|+.+. .....+.++||||+|.++=.
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLII 225 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLII 225 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceee
Confidence 999999999988776554443333 89999999876 34443321 12478999999999987410
Q ss_pred -C-------ChHHHHHHHHhcC----------------------------------------------------------
Q 039378 344 -G-------FEEPVRFILSKIS---------------------------------------------------------- 357 (600)
Q Consensus 344 -~-------~~~~~~~il~~~~---------------------------------------------------------- 357 (600)
| ....+..++..+.
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~ 305 (913)
T PRK13103 226 SGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLG 305 (913)
T ss_pred cCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhH
Confidence 0 0000111111000
Q ss_pred ----------------cC-------------------------------------------------------------C
Q 039378 358 ----------------LA-------------------------------------------------------------R 360 (600)
Q Consensus 358 ----------------~~-------------------------------------------------------------~ 360 (600)
.+ .
T Consensus 306 ~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~ 385 (913)
T PRK13103 306 LLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYN 385 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcc
Confidence 00 1
Q ss_pred cEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehh
Q 039378 361 QMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQL 440 (600)
Q Consensus 361 q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~ 440 (600)
.+.+||+|.......+...|- -.++.+.............. .+.....+...+..-+..+.. .+.||||-+.|++
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~---l~Vv~IPTnkP~~R~D~~d~-vy~t~~eK~~Ai~~ei~~~~~-~GrPVLVGT~SVe 460 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYG---LDVVVIPPNKPLARKDFNDL-VYLTAEEKYAAIITDIKECMA-LGRPVLVGTATIE 460 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhC---CCEEECCCCCCcccccCCCe-EEcCHHHHHHHHHHHHHHHHh-CCCCEEEEeCCHH
Confidence 345555555444333332221 11222222211111111111 223334566666666665544 4789999999999
Q ss_pred cHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CCEEEeccccccCCCCC-----------------------
Q 039378 441 EADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT-CPLMVATDVAARGLDIP----------------------- 496 (600)
Q Consensus 441 ~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~-~~vLvaT~~~~~Gldi~----------------------- 496 (600)
..+.|+.+|...+++.-+|++.....+-. ++. ..|. -.|-|||++++||-||.
T Consensus 461 ~SE~ls~~L~~~gi~h~VLNAk~~~~EA~-IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~ 537 (913)
T PRK13103 461 TSEHMSNLLKKEGIEHKVLNAKYHEKEAE-IIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQI 537 (913)
T ss_pred HHHHHHHHHHHcCCcHHHhccccchhHHH-HHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHH
Confidence 99999999999999988888864433322 222 3453 35999999999999994
Q ss_pred --------------CcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhH----HHHHHHHHHHh
Q 039378 497 --------------DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKAL----AGELVNVLREA 551 (600)
Q Consensus 497 --------------~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~----~~~i~~~l~~~ 551 (600)
+==|||-...+.|..--.|-.||+||-|.+|.+..|++-+|.-+ ...+..++...
T Consensus 538 ~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lmr~fg~~~~~~~~~~~ 610 (913)
T PRK13103 538 KADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMRIFASDRVKNFMKAL 610 (913)
T ss_pred HHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHhhCcHHHHHHHHHc
Confidence 11278888899999999999999999999999999999987654 23555555544
No 131
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.86 E-value=5.2e-21 Score=194.74 Aligned_cols=126 Identities=17% Similarity=0.277 Sum_probs=109.1
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CCEEEecccc
Q 039378 411 RSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT-CPLMVATDVA 489 (600)
Q Consensus 411 ~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~-~~vLvaT~~~ 489 (600)
..+...+-.+|..+. ..++++|+|++..++.+.+..+|...++..+.+.|.....+|..+++.|+... +.+|++|.+.
T Consensus 1027 SgKL~~LDeLL~kLk-aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLK-AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred ccceeeHHHHHHHhh-cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 345555666666554 45889999999999999999999999999999999999999999999999754 5578999999
Q ss_pred ccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccE--EEEEEcCCc
Q 039378 490 ARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGV--SHTFFTNHN 537 (600)
Q Consensus 490 ~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~--~~~~~~~~d 537 (600)
+.|||+..++.||+||..|+|..-.|.+.||+|.|++.. ++.+++...
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 999999999999999999999999999999999998765 455555543
No 132
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.86 E-value=2.5e-19 Score=196.39 Aligned_cols=313 Identities=19% Similarity=0.190 Sum_probs=182.7
Q ss_pred CcHHHHHHhhhhh----c------CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHH
Q 039378 201 PSPIQSHAWPFLL----N------GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQI 270 (600)
Q Consensus 201 ~~~~Q~~~i~~il----~------~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~ 270 (600)
++++|..|+..+. + .+..+++++||||||++.+. +...++.. ...+++|||+|+.+|..|+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~-la~~l~~~--------~~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLF-AARKALEL--------LKNPKVFFVVDRRELDYQL 309 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHH-HHHHHHhh--------cCCCeEEEEECcHHHHHHH
Confidence 6788998887754 2 24699999999999997443 33444422 1256799999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHHHHHHhc-CCcEEEEchHHHHHHHHcc--CCCccce-EEEEEcccchhhcCCCh
Q 039378 271 YDVLNDAGKPCGVKSVCVYGGTSKQPQITALRS-GVDIVIGTPGRLIDLIEMN--VCHLSEV-SFVVLDEADRMLDMGFE 346 (600)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~--~~~l~~~-~~lViDEah~l~~~~~~ 346 (600)
.+.|..++.... .+..+.......+.. ...|+|+|...|...+... ....... -+||+||||+....
T Consensus 310 ~~~f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~--- 380 (667)
T TIGR00348 310 MKEFQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG--- 380 (667)
T ss_pred HHHHHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch---
Confidence 999999864211 111122222233322 3689999999997643321 1111111 28999999986432
Q ss_pred HHHHHHH-HhcCcCCcEEEEeccCChhHHH-HHHHhcC--CCCeEEEECCcccccCCCeeEEEEE------ecCc-----
Q 039378 347 EPVRFIL-SKISLARQMVMFSATWPIEVHK-LAEEYMD--PNPVKVVVGSEDLAANHDVMQIVEV------LDDR----- 411 (600)
Q Consensus 347 ~~~~~il-~~~~~~~q~i~~SATl~~~~~~-~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~----- 411 (600)
. +...+ ..++ +..+++||||+-..... -...+.. ..++....-.........+...+.. ....
T Consensus 381 ~-~~~~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~ 458 (667)
T TIGR00348 381 E-LAKNLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAF 458 (667)
T ss_pred H-HHHHHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHH
Confidence 2 33333 3444 46799999997432111 0111110 1111111000000000000000000 0000
Q ss_pred ----------------------------------chHHHHH-HHHHHHh---hcCCCeEEEEEeehhcHHHHHHHHHhC-
Q 039378 412 ----------------------------------SRDQRLL-ALLEKYH---KSQRNRVLVFALYQLEADRLENMLRRS- 452 (600)
Q Consensus 412 ----------------------------------~~~~~l~-~~l~~~~---~~~~~~~lVF~~s~~~~~~l~~~L~~~- 452 (600)
.....+. .++..+. ....++.+|||.++..|..+...|...
T Consensus 459 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~ 538 (667)
T TIGR00348 459 FDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEEL 538 (667)
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhc
Confidence 0000111 1112221 122479999999999999999988654
Q ss_pred ----CCeEEEEcCCCCHH---------------------HHHHHHHHHhc-CCCCEEEeccccccCCCCCCcCEEEEcCC
Q 039378 453 ----GWKVVAIHGKKAQH---------------------ERTKSLSLFKE-GTCPLMVATDVAARGLDIPDVEVVINYSF 506 (600)
Q Consensus 453 ----~~~~~~l~~~~~~~---------------------~r~~~~~~F~~-g~~~vLvaT~~~~~Gldi~~v~~VI~~d~ 506 (600)
+.....+++..... ....++++|++ +..+|||.++.+..|+|.|.+++++...+
T Consensus 539 ~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKp 618 (667)
T TIGR00348 539 NEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKP 618 (667)
T ss_pred ccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecc
Confidence 24455666654322 22478889976 67899999999999999999999997766
Q ss_pred CCChhhHHHHhhhccCC-C--C-ccEEEEEEc
Q 039378 507 PLTTEDYVHRIGRTGRA-G--K-KGVSHTFFT 534 (600)
Q Consensus 507 p~s~~~y~qr~GR~gR~-g--~-~g~~~~~~~ 534 (600)
-.+ ..++|++||+.|. + + .|.++-|+.
T Consensus 619 lk~-h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 619 LKY-HGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred ccc-cHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 555 4689999999994 3 2 244554544
No 133
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=4.2e-21 Score=188.78 Aligned_cols=329 Identities=18% Similarity=0.198 Sum_probs=213.5
Q ss_pred cCCCCHHHHHhhcCCCCCcHHHHHHhhhhhcC---CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEE
Q 039378 184 ESKLPDDVLGCCKNFKNPSPIQSHAWPFLLNG---RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVL 260 (600)
Q Consensus 184 ~~~l~~~l~~~~~~~~~~~~~Q~~~i~~il~~---~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv 260 (600)
.-.+.|.|---++.-..++|+|..++..|..+ +..|+..|+|+|||++-+. +...+ ...|||+
T Consensus 286 ND~~npdl~idLKPst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvT-Aa~ti-------------kK~clvL 351 (776)
T KOG1123|consen 286 NDNVNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVT-AACTI-------------KKSCLVL 351 (776)
T ss_pred cCCCCCCCCcCcCcccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeee-eeeee-------------cccEEEE
Confidence 33444444333445567899999999998843 4689999999999997433 33322 2238999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHc--------cCCCccceEEE
Q 039378 261 SPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEM--------NVCHLSEVSFV 332 (600)
Q Consensus 261 ~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~--------~~~~l~~~~~l 332 (600)
|.+-.-+.||...|..|...-+-.+..++.... .....++.|+|+|+.++..--.+ ..+.-..|.++
T Consensus 352 cts~VSVeQWkqQfk~wsti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGll 426 (776)
T KOG1123|consen 352 CTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLL 426 (776)
T ss_pred ecCccCHHHHHHHHHhhcccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeE
Confidence 999999999999999987644333333333322 22345689999999887442211 12234569999
Q ss_pred EEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCee----------
Q 039378 333 VLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVM---------- 402 (600)
Q Consensus 333 ViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---------- 402 (600)
|+||+|.+...-|+..+..+-.++ .++++||+-.+...+....+...|......-.++.....+.
T Consensus 427 llDEVHvvPA~MFRRVlsiv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCp 501 (776)
T KOG1123|consen 427 LLDEVHVVPAKMFRRVLSIVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCP 501 (776)
T ss_pred EeehhccchHHHHHHHHHHHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecC
Confidence 999999987765665555555554 68999998654433322211112211111100011001010
Q ss_pred ----------------EEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHH
Q 039378 403 ----------------QIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQH 466 (600)
Q Consensus 403 ----------------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~ 466 (600)
.....+-...+. ....+|-.++...+.++|||..+.-.+...+-.|.+ -.|+|.+++.
T Consensus 502 Mt~eFy~eYL~~~t~kr~lLyvMNP~KF-raCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ 575 (776)
T KOG1123|consen 502 MTPEFYREYLRENTRKRMLLYVMNPNKF-RACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQN 575 (776)
T ss_pred CCHHHHHHHHhhhhhhhheeeecCcchh-HHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchh
Confidence 011111112222 333444455556788999999988877777766644 3688999999
Q ss_pred HHHHHHHHHhcC-CCCEEEeccccccCCCCCCcCEEEEcCCC-CChhhHHHHhhhccCCCC------ccEEEEEEcCCcH
Q 039378 467 ERTKSLSLFKEG-TCPLMVATDVAARGLDIPDVEVVINYSFP-LTTEDYVHRIGRTGRAGK------KGVSHTFFTNHNK 538 (600)
Q Consensus 467 ~r~~~~~~F~~g-~~~vLvaT~~~~~Gldi~~v~~VI~~d~p-~s~~~y~qr~GR~gR~g~------~g~~~~~~~~~d~ 538 (600)
+|.++++.|+.+ .+.-++-+.++...+|+|.++++|+.... -|..+-.||.||.-|+-+ ...-+++++.+..
T Consensus 576 ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 576 ERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred HHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 999999999865 67788888999999999999999976543 356788999999998743 2455677777766
Q ss_pred hHHH
Q 039378 539 ALAG 542 (600)
Q Consensus 539 ~~~~ 542 (600)
++..
T Consensus 656 EM~Y 659 (776)
T KOG1123|consen 656 EMYY 659 (776)
T ss_pred HHHh
Confidence 6554
No 134
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.85 E-value=8.6e-21 Score=199.70 Aligned_cols=343 Identities=18% Similarity=0.212 Sum_probs=216.6
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|..||++.+..+-.+..+++.|||.+|||.+ ..-++...++... ...+++++||++|+.|+...+.....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD--------~~VVIyvaPtKaLVnQvsa~VyaRF~ 581 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESD--------SDVVIYVAPTKALVNQVSANVYARFD 581 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhhcC--------CCEEEEecchHHHhhhhhHHHHHhhc
Confidence 57899999999999999999999999999986 3334566665533 33479999999999999877766542
Q ss_pred -CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHc---cCCCccceEEEEEcccchhhcCCChHHHHHHHHh
Q 039378 280 -PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEM---NVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSK 355 (600)
Q Consensus 280 -~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~---~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~ 355 (600)
.+-.+.+.+.|.....-++. .-+|+|+|+-|+.|..++-. ...+..+++++|+||+|.+.+..-.-.++.++..
T Consensus 582 ~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l 659 (1330)
T KOG0949|consen 582 TKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL 659 (1330)
T ss_pred cCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh
Confidence 22233333444333332222 22499999999999888765 3445789999999999999876555555666655
Q ss_pred cCcCCcEEEEeccCChhHH--HHHH---HhcCCCCeEE------------------------------------------
Q 039378 356 ISLARQMVMFSATWPIEVH--KLAE---EYMDPNPVKV------------------------------------------ 388 (600)
Q Consensus 356 ~~~~~q~i~~SATl~~~~~--~~~~---~~~~~~~~~i------------------------------------------ 388 (600)
+ .+.++++|||+.+... .+.. +-+..+...+
T Consensus 660 i--~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~~ 737 (1330)
T KOG0949|consen 660 I--PCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRE 737 (1330)
T ss_pred c--CCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhhc
Confidence 5 3679999999532110 0000 0000000000
Q ss_pred -----------EECC------------------cccccCC----------------------------------------
Q 039378 389 -----------VVGS------------------EDLAANH---------------------------------------- 399 (600)
Q Consensus 389 -----------~~~~------------------~~~~~~~---------------------------------------- 399 (600)
.+.+ .......
T Consensus 738 ~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k 817 (1330)
T KOG0949|consen 738 LSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTK 817 (1330)
T ss_pred cccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhh
Confidence 0000 0000000
Q ss_pred ---CeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHh----C--------------------
Q 039378 400 ---DVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRR----S-------------------- 452 (600)
Q Consensus 400 ---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~-------------------- 452 (600)
.........+...-...++.++..+.....-+.|+|--.+..|..++..+.. .
T Consensus 818 ~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a 897 (1330)
T KOG0949|consen 818 EVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKRA 897 (1330)
T ss_pred hhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 0000000111111223355556555555566889998888777766543210 0
Q ss_pred -------------C---------------------------------------------------CeEEEEcCCCCHHHH
Q 039378 453 -------------G---------------------------------------------------WKVVAIHGKKAQHER 468 (600)
Q Consensus 453 -------------~---------------------------------------------------~~~~~l~~~~~~~~r 468 (600)
+ -.++.+|++|....|
T Consensus 898 ~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR 977 (1330)
T KOG0949|consen 898 RDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYR 977 (1330)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHHH
Confidence 0 116899999999999
Q ss_pred HHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcC-CCCChhhHHHHhhhccCCCCc--cEEEEEEcCCcHhHHHHHH
Q 039378 469 TKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYS-FPLTTEDYVHRIGRTGRAGKK--GVSHTFFTNHNKALAGELV 545 (600)
Q Consensus 469 ~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d-~p~s~~~y~qr~GR~gR~g~~--g~~~~~~~~~d~~~~~~i~ 545 (600)
..+.-.|+.|...||+||.+++-|||.|.-.+|+-.| +-.+|-.|.|++|||||.|-. |.++.+ ...-....+-+.
T Consensus 978 ~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm-giP~~kv~rLlt 1056 (1330)
T KOG0949|consen 978 SLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM-GIPRQKVQRLLT 1056 (1330)
T ss_pred HHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE-eCcHHHHHHHHH
Confidence 9999999999999999999999999999766666555 456788999999999999865 555433 333333333334
Q ss_pred HHHHHhcCCCc
Q 039378 546 NVLREARQVVP 556 (600)
Q Consensus 546 ~~l~~~~~~ip 556 (600)
..|.......|
T Consensus 1057 s~L~diqG~~p 1067 (1330)
T KOG0949|consen 1057 SLLPDIQGAYP 1067 (1330)
T ss_pred HhhhcccCCCc
Confidence 44444444444
No 135
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=4.5e-19 Score=189.15 Aligned_cols=330 Identities=18% Similarity=0.223 Sum_probs=223.1
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+++|..+.-.+..|+ |..+.||=|||+++.+|+....+.... |-||+..--||..=.+++..+..
T Consensus 78 r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~Gkg-----------VhVVTvNdYLA~RDae~mg~vy~ 144 (925)
T PRK12903 78 RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKG-----------VIVSTVNEYLAERDAEEMGKVFN 144 (925)
T ss_pred CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCc-----------eEEEecchhhhhhhHHHHHHHHH
Confidence 78899999888887764 789999999999999998877666543 67889999999888888888888
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHH-HHHHHccC------CCccceEEEEEcccchhhcC---------
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL-IDLIEMNV------CHLSEVSFVVLDEADRMLDM--------- 343 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~------~~l~~~~~lViDEah~l~~~--------- 343 (600)
.+|+.+.++..+.......... .|||+++|..-| .++++.+. .....+.+.||||+|.++=.
T Consensus 145 fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIIS 222 (925)
T PRK12903 145 FLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIIS 222 (925)
T ss_pred HhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccccc
Confidence 8899999888776655443333 489999998776 34554332 22467889999999976410
Q ss_pred C-------ChHHHHHHHHhcCcC---------------------------------------------------------
Q 039378 344 G-------FEEPVRFILSKISLA--------------------------------------------------------- 359 (600)
Q Consensus 344 ~-------~~~~~~~il~~~~~~--------------------------------------------------------- 359 (600)
| ....+..+...+...
T Consensus 223 g~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~d 302 (925)
T PRK12903 223 GGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVE 302 (925)
T ss_pred CCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 0 001111111111100
Q ss_pred -----------------------------------------------------------CcEEEEeccCChhHHHHHHHh
Q 039378 360 -----------------------------------------------------------RQMVMFSATWPIEVHKLAEEY 380 (600)
Q Consensus 360 -----------------------------------------------------------~q~i~~SATl~~~~~~~~~~~ 380 (600)
.++.+||+|.-..-.++...|
T Consensus 303 YiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY 382 (925)
T PRK12903 303 YIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIY 382 (925)
T ss_pred eEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHh
Confidence 234566666544444443322
Q ss_pred cCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEc
Q 039378 381 MDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIH 460 (600)
Q Consensus 381 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~ 460 (600)
- -.++.+............. ..+.....+...++.-+..+.. .+.|+||.|.|++..+.|+..|...|++...++
T Consensus 383 ~---l~Vv~IPTnkP~~R~D~~d-~iy~t~~~K~~Aii~ei~~~~~-~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLN 457 (925)
T PRK12903 383 N---MRVNVVPTNKPVIRKDEPD-SIFGTKHAKWKAVVKEVKRVHK-KGQPILIGTAQVEDSETLHELLLEANIPHTVLN 457 (925)
T ss_pred C---CCEEECCCCCCeeeeeCCC-cEEEcHHHHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHCCCCceeec
Confidence 1 1122222211111111110 1223344566666665555543 477999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCC-CCEEEeccccccCCCCCCcC--------EEEEcCCCCChhhHHHHhhhccCCCCccEEEE
Q 039378 461 GKKAQHERTKSLSLFKEGT-CPLMVATDVAARGLDIPDVE--------VVINYSFPLTTEDYVHRIGRTGRAGKKGVSHT 531 (600)
Q Consensus 461 ~~~~~~~r~~~~~~F~~g~-~~vLvaT~~~~~Gldi~~v~--------~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~ 531 (600)
+.-. +++..+-. ..|. -.|.|||++++||.||.--. |||....|.|..---|..||+||.|.+|.+..
T Consensus 458 Ak~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 458 AKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred ccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 8643 33333322 4564 45999999999999996322 89999999999999999999999999999999
Q ss_pred EEcCCcHhHH-----HHHHHHHHHhc
Q 039378 532 FFTNHNKALA-----GELVNVLREAR 552 (600)
Q Consensus 532 ~~~~~d~~~~-----~~i~~~l~~~~ 552 (600)
|++-+|.-+- ..+..++...+
T Consensus 535 ~lSLeD~L~r~f~~~~ri~~~~~~l~ 560 (925)
T PRK12903 535 FISLDDQLFRRFSNFDKIKEAFKKLG 560 (925)
T ss_pred EEecchHHHHHhCCHHHHHHHHHhcC
Confidence 9998886542 35555555443
No 136
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.84 E-value=3.7e-19 Score=167.41 Aligned_cols=184 Identities=43% Similarity=0.639 Sum_probs=150.2
Q ss_pred CCCCCcHHHHHHhhhhhcC-CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNG-RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN 275 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~-~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~ 275 (600)
++..|+++|.+++..++.. +.++++++||+|||.+++.+++..+.... ..++||++|++.++.|+...+.
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---------~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---------GKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---------CCcEEEEeCCHHHHHHHHHHHH
Confidence 5678999999999999999 99999999999999988888777665432 2347999999999999999999
Q ss_pred HhcCCCCceEEEEeCCCChHHHHHHHhcCC-cEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHH
Q 039378 276 DAGKPCGVKSVCVYGGTSKQPQITALRSGV-DIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354 (600)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~-~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~ 354 (600)
.+............++.........+..+. +|+++|++.+.+.+.........++++|+||+|.+....+...+..++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~ 155 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLK 155 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHH
Confidence 987655445566666666555666666666 9999999999998887666678899999999999987567788888888
Q ss_pred hcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEE
Q 039378 355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVV 390 (600)
Q Consensus 355 ~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~ 390 (600)
.++...+++++|||++.........++. ....+..
T Consensus 156 ~~~~~~~~v~~saT~~~~~~~~~~~~~~-~~~~~~~ 190 (201)
T smart00487 156 LLPKNVQLLLLSATPPEEIENLLELFLN-DPVFIDV 190 (201)
T ss_pred hCCccceEEEEecCCchhHHHHHHHhcC-CCEEEeC
Confidence 8878889999999999888888888773 4444443
No 137
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=3.9e-18 Score=182.93 Aligned_cols=320 Identities=23% Similarity=0.250 Sum_probs=206.8
Q ss_pred CCCcHHHHHHhhhhhcC----CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHH
Q 039378 199 KNPSPIQSHAWPFLLNG----RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~----~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~ 274 (600)
..+++-|..++..+... ...++.+.||||||.+|+- ++...+.. |..+||++|-..|-.|+.++|
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~-~i~~~L~~----------GkqvLvLVPEI~Ltpq~~~rf 265 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLE-AIAKVLAQ----------GKQVLVLVPEIALTPQLLARF 265 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHH-HHHHHHHc----------CCEEEEEeccccchHHHHHHH
Confidence 45678899999998766 4689999999999999754 45555554 334899999999999999999
Q ss_pred HHhcCCCCceEEEEeCCCChHHHH---HHHh-cCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhc--C---CC
Q 039378 275 NDAGKPCGVKSVCVYGGTSKQPQI---TALR-SGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLD--M---GF 345 (600)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~---~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~--~---~~ 345 (600)
..... .++..++++.+..+.. .... ....|||+|=.-| ...+.++.+|||||=|.-.- . .+
T Consensus 266 ~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prY 335 (730)
T COG1198 266 KARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRY 335 (730)
T ss_pred HHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCc
Confidence 98764 5667777777655443 3333 4589999996544 34688999999999996431 1 12
Q ss_pred hHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcch-----HHHHHHH
Q 039378 346 EEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSR-----DQRLLAL 420 (600)
Q Consensus 346 ~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~ 420 (600)
...--.++..-..+.++|+-|||++-+....+ .- .....+................+........ ...+++.
T Consensus 336 hARdvA~~Ra~~~~~pvvLgSATPSLES~~~~--~~-g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~ 412 (730)
T COG1198 336 HARDVAVLRAKKENAPVVLGSATPSLESYANA--ES-GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEA 412 (730)
T ss_pred CHHHHHHHHHHHhCCCEEEecCCCCHHHHHhh--hc-CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHH
Confidence 22222334444456789999999664433332 11 1122222222211111111122221111111 1334444
Q ss_pred HHHHhhcCCCeEEEEEeehhcH----------------------------------------------------------
Q 039378 421 LEKYHKSQRNRVLVFALYQLEA---------------------------------------------------------- 442 (600)
Q Consensus 421 l~~~~~~~~~~~lVF~~s~~~~---------------------------------------------------------- 442 (600)
+..... .+.++|+|.|.+--+
T Consensus 413 i~~~l~-~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~ 491 (730)
T COG1198 413 IRKTLE-RGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGP 491 (730)
T ss_pred HHHHHh-cCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecc
Confidence 433222 255677776554433
Q ss_pred --HHHHHHHHhC--CCeEEEEcCCCCHHH--HHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCC--------
Q 039378 443 --DRLENMLRRS--GWKVVAIHGKKAQHE--RTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPL-------- 508 (600)
Q Consensus 443 --~~l~~~L~~~--~~~~~~l~~~~~~~~--r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~-------- 508 (600)
+++.+.|... +.++..+.+++.... -...+..|..|+..|||.|.+++.|.|+|++..|...|...
T Consensus 492 GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfR 571 (730)
T COG1198 492 GTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFR 571 (730)
T ss_pred cHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcc
Confidence 2334444433 456888888876544 46789999999999999999999999999999977655432
Q ss_pred ----ChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHH
Q 039378 509 ----TTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGE 543 (600)
Q Consensus 509 ----s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~ 543 (600)
....+.|-.|||||.+.+|.+++-...-+...+..
T Consensus 572 A~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~ 610 (730)
T COG1198 572 ASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQA 610 (730)
T ss_pred hHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHH
Confidence 24556799999999999998888776666544433
No 138
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.81 E-value=2.9e-18 Score=184.28 Aligned_cols=275 Identities=18% Similarity=0.166 Sum_probs=177.4
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+++|..+.-.+..| -|+.+.||.|||+++.+|+....+.... |.||+++..||.+-++++..+..
T Consensus 76 r~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL~G~~-----------VhVvT~NdyLA~RD~e~m~pvy~ 142 (870)
T CHL00122 76 RHFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNALTGKG-----------VHIVTVNDYLAKRDQEWMGQIYR 142 (870)
T ss_pred CCCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHhcCCc-----------eEEEeCCHHHHHHHHHHHHHHHH
Confidence 4888898887666554 6899999999999999998766654332 78999999999999999999999
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHH-HHHHcc------CCCccceEEEEEcccchhhcCC--------
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI-DLIEMN------VCHLSEVSFVVLDEADRMLDMG-------- 344 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~-~~l~~~------~~~l~~~~~lViDEah~l~~~~-------- 344 (600)
.+|+.+.++.++.+........ .+||+++|..-|- ++++.+ ......+.+.||||+|.++=..
T Consensus 143 ~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiIS 220 (870)
T CHL00122 143 FLGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIIS 220 (870)
T ss_pred HcCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceecc
Confidence 9999999988877665443333 4899999987552 344322 1234668999999999764100
Q ss_pred --------ChHHHHHHHHhcCc-------------------------------------------------------C--
Q 039378 345 --------FEEPVRFILSKISL-------------------------------------------------------A-- 359 (600)
Q Consensus 345 --------~~~~~~~il~~~~~-------------------------------------------------------~-- 359 (600)
.......+...+.. +
T Consensus 221 g~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~d 300 (870)
T CHL00122 221 GQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVH 300 (870)
T ss_pred CCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCc
Confidence 00000001111000 0
Q ss_pred -----------------------------------------------------------CcEEEEeccCChhHHHHHHHh
Q 039378 360 -----------------------------------------------------------RQMVMFSATWPIEVHKLAEEY 380 (600)
Q Consensus 360 -----------------------------------------------------------~q~i~~SATl~~~~~~~~~~~ 380 (600)
..+.+||+|.-..-..+...|
T Consensus 301 YiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY 380 (870)
T CHL00122 301 YIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIY 380 (870)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHh
Confidence 245677777655444443332
Q ss_pred cCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEc
Q 039378 381 MDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIH 460 (600)
Q Consensus 381 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~ 460 (600)
- -.++.+.+.......... -..+.....+...+..-+..... .+.|+||-|.|++..+.|+..|...|++..+++
T Consensus 381 ~---l~vv~IPtnkp~~R~d~~-d~v~~t~~~K~~AI~~ei~~~~~-~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLN 455 (870)
T CHL00122 381 N---LEVVCIPTHRPMLRKDLP-DLIYKDELSKWRAIADECLQMHQ-TGRPILIGTTTIEKSELLSQLLKEYRLPHQLLN 455 (870)
T ss_pred C---CCEEECCCCCCccceeCC-CeEEeCHHHHHHHHHHHHHHHHh-cCCCEEEeeCCHHHHHHHHHHHHHcCCccceee
Confidence 1 122222222211111111 11223334466666665554433 478999999999999999999999999999999
Q ss_pred CCCCHHHH-HHHHHHHhcCC-CCEEEeccccccCCCCC
Q 039378 461 GKKAQHER-TKSLSLFKEGT-CPLMVATDVAARGLDIP 496 (600)
Q Consensus 461 ~~~~~~~r-~~~~~~F~~g~-~~vLvaT~~~~~Gldi~ 496 (600)
+.-...++ ..++.. .|. -.|-|||++++||.||.
T Consensus 456 Ak~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 456 AKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred CCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 97422222 233332 454 35999999999999983
No 139
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.81 E-value=7.5e-18 Score=187.90 Aligned_cols=316 Identities=15% Similarity=0.170 Sum_probs=195.1
Q ss_pred CCCCCcHHHHHHhhh----hhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHH-
Q 039378 197 NFKNPSPIQSHAWPF----LLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIY- 271 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~----il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~- 271 (600)
|| ++++-|.+.... +..+..+++.|+||+|||++|++|++... .+.+++|++||++|+.|+.
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------~~~~vvI~t~T~~Lq~Ql~~ 309 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------DQRQIIVSVPTKILQDQIMA 309 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------CCCcEEEEeCcHHHHHHHHH
Confidence 44 688999885444 33567899999999999999999988643 1345899999999999994
Q ss_pred HHHHHhcCCCCceEEEEeCCCChHHH-----------------------------------------------HHHH---
Q 039378 272 DVLNDAGKPCGVKSVCVYGGTSKQPQ-----------------------------------------------ITAL--- 301 (600)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~-----------------------------------------------~~~l--- 301 (600)
+.+..+...+++.+.++.|+.+.-.. +..+
T Consensus 310 ~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~ 389 (820)
T PRK07246 310 EEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHD 389 (820)
T ss_pred HHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhcc
Confidence 66777776677777777766441100 0000
Q ss_pred ---------------------hcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCC-----Ch-------HH
Q 039378 302 ---------------------RSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMG-----FE-------EP 348 (600)
Q Consensus 302 ---------------------~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~-----~~-------~~ 348 (600)
...++|||++...|...+.... .+...+++||||||++.+.. .. ..
T Consensus 390 ~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~ 468 (820)
T PRK07246 390 GNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQT 468 (820)
T ss_pred CCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHH
Confidence 0127999999998887664443 35679999999999875310 00 00
Q ss_pred --------------------------------------------------H-----------HHHHHhc-----------
Q 039378 349 --------------------------------------------------V-----------RFILSKI----------- 356 (600)
Q Consensus 349 --------------------------------------------------~-----------~~il~~~----------- 356 (600)
+ ..++..-
T Consensus 469 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~ 548 (820)
T PRK07246 469 IQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQ 548 (820)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 0 0000000
Q ss_pred ----------------------CcCCcEEEEeccCC--hhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEE---ec
Q 039378 357 ----------------------SLARQMVMFSATWP--IEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEV---LD 409 (600)
Q Consensus 357 ----------------------~~~~q~i~~SATl~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~ 409 (600)
+....+|++||||+ +.. .+ ...++........... ... -...... .+
T Consensus 549 ~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~-~~~lGl~~~~~~~~~~---~~~-~~~~~~i~~~~p 622 (820)
T PRK07246 549 SEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SL-ADLLGFEEYLFHKIEK---DKK-QDQLVVVDQDMP 622 (820)
T ss_pred CCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cH-HHHcCCCccceecCCC---ChH-HccEEEeCCCCC
Confidence 00125689999986 222 23 2223221111110010 000 0111111 11
Q ss_pred C------cchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEE
Q 039378 410 D------RSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLM 483 (600)
Q Consensus 410 ~------~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vL 483 (600)
. ......+...+..+. ..++++||+++|.+.+..++..|....+.+ ...|... .|.+++++|+.+...||
T Consensus 623 ~~~~~~~~~~~~~~~~~i~~~~-~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vL 698 (820)
T PRK07246 623 LVTETSDEVYAEEIAKRLEELK-QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQIL 698 (820)
T ss_pred CCCCCChHHHHHHHHHHHHHHH-hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEE
Confidence 1 112234444454444 457899999999999999999997665544 4445322 25678999999888999
Q ss_pred EeccccccCCCCCC--cCEEEEcCCCC----C--------------------------hhhHHHHhhhccCCCCccEEEE
Q 039378 484 VATDVAARGLDIPD--VEVVINYSFPL----T--------------------------TEDYVHRIGRTGRAGKKGVSHT 531 (600)
Q Consensus 484 vaT~~~~~Gldi~~--v~~VI~~d~p~----s--------------------------~~~y~qr~GR~gR~g~~g~~~~ 531 (600)
++|+.+.+|||+|+ ...||...+|. + ...+.|.+||.-|.....-+++
T Consensus 699 lG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ 778 (820)
T PRK07246 699 LGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL 778 (820)
T ss_pred EecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 99999999999974 55567666552 1 1223588999999765433556
Q ss_pred EEcCC
Q 039378 532 FFTNH 536 (600)
Q Consensus 532 ~~~~~ 536 (600)
+++++
T Consensus 779 ilD~R 783 (820)
T PRK07246 779 ILDRR 783 (820)
T ss_pred EECCc
Confidence 66554
No 140
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.81 E-value=6.5e-18 Score=168.49 Aligned_cols=146 Identities=23% Similarity=0.342 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCC
Q 039378 414 DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGL 493 (600)
Q Consensus 414 ~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gl 493 (600)
...++.-+.... ..+.++||-+-|+++++.|..+|.+.|+++..+|++...-+|..+++..+.|.+.|||..+.+-.||
T Consensus 432 vdDL~~EI~~r~-~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGL 510 (663)
T COG0556 432 VDDLLSEIRKRV-AKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (663)
T ss_pred HHHHHHHHHHHH-hcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccC
Confidence 344444443332 2358999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCEEEEcCC-----CCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHH---------HHHHHhcCCCcHHH
Q 039378 494 DIPDVEVVINYSF-----PLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELV---------NVLREARQVVPDAL 559 (600)
Q Consensus 494 di~~v~~VI~~d~-----p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~---------~~l~~~~~~ip~~l 559 (600)
|+|.|..|.++|. ..|-.+.+|-+|||+|.- .|.++.|...-...+-+.|- ....+.....|..+
T Consensus 511 DiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~-~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti 589 (663)
T COG0556 511 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTI 589 (663)
T ss_pred CCcceeEEEEeecCccccccccchHHHHHHHHhhcc-CCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhh
Confidence 9999999999884 568899999999999974 79999988765544433332 23344455566555
Q ss_pred Hh
Q 039378 560 LK 561 (600)
Q Consensus 560 ~~ 561 (600)
.+
T Consensus 590 ~K 591 (663)
T COG0556 590 KK 591 (663)
T ss_pred hh
Confidence 43
No 141
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=1.3e-18 Score=178.04 Aligned_cols=121 Identities=15% Similarity=0.248 Sum_probs=104.1
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhc--CCCCE-EEeccc
Q 039378 412 SRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE--GTCPL-MVATDV 488 (600)
Q Consensus 412 ~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~--g~~~v-LvaT~~ 488 (600)
.+....+..+..+......+++|..+-...+..+...|+..|+.+..+||....++|+.+++.|+. |..+| |++-.+
T Consensus 729 ~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 729 CKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred hHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 355566666666655667799999999999999999999999999999999999999999999974 44455 556688
Q ss_pred cccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEE
Q 039378 489 AARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTF 532 (600)
Q Consensus 489 ~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~ 532 (600)
.+.|||+.+.+|+|..|+.|||+--.|...|..|.||+..++++
T Consensus 809 GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 809 GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 89999999999999999999999999999999999998776654
No 142
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.78 E-value=3.2e-16 Score=167.15 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=82.0
Q ss_pred HHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhc----CCCCEEEeccccccC
Q 039378 417 LLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE----GTCPLMVATDVAARG 492 (600)
Q Consensus 417 l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~----g~~~vLvaT~~~~~G 492 (600)
+...+..+....+|++||.+.|...+..++..|...--....+.|..+ .+...+++|+. |...||++|+.+..|
T Consensus 458 ~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweG 535 (636)
T TIGR03117 458 VSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTG 535 (636)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccc
Confidence 444444444555789999999999999999999754223455556543 35667888887 478899999999999
Q ss_pred CCC--------C--CcCEEEEcCCCCCh-------------------------hhHHHHhhhccCCCCc--cEEEEEEcC
Q 039378 493 LDI--------P--DVEVVINYSFPLTT-------------------------EDYVHRIGRTGRAGKK--GVSHTFFTN 535 (600)
Q Consensus 493 ldi--------~--~v~~VI~~d~p~s~-------------------------~~y~qr~GR~gR~g~~--g~~~~~~~~ 535 (600)
||+ | .+++||+..+|..+ ..+.|-+||.-|.... --++.++++
T Consensus 536 vDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 536 IDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDG 615 (636)
T ss_pred cccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeC
Confidence 999 3 48889987776322 1234777888886554 334444444
Q ss_pred C
Q 039378 536 H 536 (600)
Q Consensus 536 ~ 536 (600)
.
T Consensus 616 R 616 (636)
T TIGR03117 616 R 616 (636)
T ss_pred C
Confidence 4
No 143
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.78 E-value=2.8e-18 Score=149.94 Aligned_cols=120 Identities=44% Similarity=0.745 Sum_probs=109.2
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecccccc
Q 039378 412 SRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAAR 491 (600)
Q Consensus 412 ~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~ 491 (600)
.+...+..++..... ..+++||||++...+..++..|...+..+..+||+++..+|..++..|..|...+|++|.++++
T Consensus 12 ~k~~~i~~~i~~~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 12 EKLEALLELLKEHLK-KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHhccc-CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 456666666665432 4679999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEE
Q 039378 492 GLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTF 532 (600)
Q Consensus 492 Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~ 532 (600)
|+|+|++++||++++|++...|.|++||++|.|+.|.+++|
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999888764
No 144
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=7.3e-17 Score=173.13 Aligned_cols=275 Identities=19% Similarity=0.203 Sum_probs=178.0
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+++|..+--.++.|+ |+.+.||-|||+++.+|++...+.... |-||+++..||..-.+++..+..
T Consensus 85 r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~Gkg-----------VhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 85 RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGKG-----------VHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCCC-----------eEEEeCCHHHHHhHHHHHHHHHH
Confidence 68889988887776664 899999999999999999887776543 78999999999999999999888
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHH-----HHHHHc--cCCCccceEEEEEcccchhhcC---------
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL-----IDLIEM--NVCHLSEVSFVVLDEADRMLDM--------- 343 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l-----~~~l~~--~~~~l~~~~~lViDEah~l~~~--------- 343 (600)
.+|+.+.++.++....... ..-.+||+++|+..| .+.+.. .......+.+.||||+|.++=.
T Consensus 152 ~LGLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIIS 229 (939)
T PRK12902 152 FLGLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIIS 229 (939)
T ss_pred HhCCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCccccc
Confidence 8999999888766554333 334589999999887 333321 1234577899999999976410
Q ss_pred C-------ChHHHHHHHHhcCc------C---------------------------------------------------
Q 039378 344 G-------FEEPVRFILSKISL------A--------------------------------------------------- 359 (600)
Q Consensus 344 ~-------~~~~~~~il~~~~~------~--------------------------------------------------- 359 (600)
| .......+...+.. .
T Consensus 230 g~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~l 309 (939)
T PRK12902 230 GQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKEL 309 (939)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHH
Confidence 0 00011111111110 0
Q ss_pred -----------------------------------------------------------------CcEEEEeccCChhHH
Q 039378 360 -----------------------------------------------------------------RQMVMFSATWPIEVH 374 (600)
Q Consensus 360 -----------------------------------------------------------------~q~i~~SATl~~~~~ 374 (600)
.++.+||+|.-....
T Consensus 310 f~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~ 389 (939)
T PRK12902 310 FIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEV 389 (939)
T ss_pred HhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHH
Confidence 134556666544333
Q ss_pred HHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCC
Q 039378 375 KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGW 454 (600)
Q Consensus 375 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~ 454 (600)
++...|- -.++.+............. ..+.....+...+..-+..... .+.|+||-|.|++..+.|+..|...|+
T Consensus 390 Ef~~iY~---l~Vv~IPTnkP~~R~d~~d-~vy~t~~~K~~Ai~~ei~~~~~-~GrPVLIgT~SVe~SE~ls~~L~~~gi 464 (939)
T PRK12902 390 EFEKTYK---LEVTVIPTNRPRRRQDWPD-QVYKTEIAKWRAVANETAEMHK-QGRPVLVGTTSVEKSELLSALLQEQGI 464 (939)
T ss_pred HHHHHhC---CcEEEcCCCCCeeeecCCC-eEEcCHHHHHHHHHHHHHHHHh-CCCCEEEeeCCHHHHHHHHHHHHHcCC
Confidence 3333221 1122222211111111111 1122334566666665555443 478999999999999999999999999
Q ss_pred eEEEEcCCCCHHHHH-HHHHHHhcCCC-CEEEeccccccCCCCC
Q 039378 455 KVVAIHGKKAQHERT-KSLSLFKEGTC-PLMVATDVAARGLDIP 496 (600)
Q Consensus 455 ~~~~l~~~~~~~~r~-~~~~~F~~g~~-~vLvaT~~~~~Gldi~ 496 (600)
+..++++.-...+++ .++.. .|+. .|-|||++++||-||.
T Consensus 465 ~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 465 PHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred chheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 999999963222222 23332 4543 4999999999999884
No 145
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.78 E-value=1.6e-17 Score=174.26 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=95.8
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHh----------------------CCCeEEEEcCCCCHHHHHHHHHHHhcCC----CC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRR----------------------SGWKVVAIHGKKAQHERTKSLSLFKEGT----CP 481 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~----------------------~~~~~~~l~~~~~~~~r~~~~~~F~~g~----~~ 481 (600)
-+.++|||.+|...++.+..+|.. .|..+..|.|.....+|....+.|++-. ..
T Consensus 1141 IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl 1220 (1567)
T KOG1015|consen 1141 IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARL 1220 (1567)
T ss_pred hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEE
Confidence 468999999999999999998863 1456899999999999999999998642 34
Q ss_pred EEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCC
Q 039378 482 LMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNH 536 (600)
Q Consensus 482 vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~ 536 (600)
+||+|.+.+.|||+-.++.||+||..|||..-.|.+=|+.|.||...||+|-.-.
T Consensus 1221 ~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA 1275 (1567)
T KOG1015|consen 1221 FLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA 1275 (1567)
T ss_pred EEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh
Confidence 8999999999999999999999999999999999999999999988777765433
No 146
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=4.3e-18 Score=169.96 Aligned_cols=320 Identities=14% Similarity=0.067 Sum_probs=220.8
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 199 KNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
...+.+|..+|..+.+|+++++.-.|.+||.++|.+.+...++..+... .+++.|+.++++...+.+.-..
T Consensus 285 E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~---------~~~~~~~~~~~~~~~~~~~V~~ 355 (1034)
T KOG4150|consen 285 ESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATN---------SLLPSEMVEHLRNGSKGQVVHV 355 (1034)
T ss_pred cchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccc---------eecchhHHHHhhccCCceEEEE
Confidence 4677899999999999999999999999999999998776665543321 4888999999866544322111
Q ss_pred C---CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc----CCCccceEEEEEcccchhhcCCChHHHHH
Q 039378 279 K---PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN----VCHLSEVSFVVLDEADRMLDMGFEEPVRF 351 (600)
Q Consensus 279 ~---~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~----~~~l~~~~~lViDEah~l~~~~~~~~~~~ 351 (600)
. ...-.++..+.+..........+.+.+++++.|......+-.+ ..++-...++++||+|.++.. +......
T Consensus 356 ~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~~~ 434 (1034)
T KOG4150|consen 356 EVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALAQD 434 (1034)
T ss_pred EehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHHHH
Confidence 1 1112345556677666666667778999999999887654322 223445678999999987754 4333333
Q ss_pred HHH----hc-----CcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecC------cchHHH
Q 039378 352 ILS----KI-----SLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDD------RSRDQR 416 (600)
Q Consensus 352 il~----~~-----~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 416 (600)
.++ .+ ..+.|++-.|||+...++-+.. ++..+.+.+....... ....+++...+. ..+...
T Consensus 435 ~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~-~~~~~E~~Li~~DGSP---s~~K~~V~WNP~~~P~~~~~~~~~ 510 (1034)
T KOG4150|consen 435 QLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSE-LANLSELELVTIDGSP---SSEKLFVLWNPSAPPTSKSEKSSK 510 (1034)
T ss_pred HHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHH-hcCCcceEEEEecCCC---CccceEEEeCCCCCCcchhhhhhH
Confidence 332 22 2456899999998776665443 3334444333222211 112223332221 112222
Q ss_pred ---HHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHh----CCC----eEEEEcCCCCHHHHHHHHHHHhcCCCCEEEe
Q 039378 417 ---LLALLEKYHKSQRNRVLVFALYQLEADRLENMLRR----SGW----KVVAIHGKKAQHERTKSLSLFKEGTCPLMVA 485 (600)
Q Consensus 417 ---l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~----~~~~l~~~~~~~~r~~~~~~F~~g~~~vLva 485 (600)
...++..+.. .+-++|-||.+++-|+.+....++ .+. .+..+.|+...++|+++....-.|+..-+|+
T Consensus 511 i~E~s~~~~~~i~-~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIa 589 (1034)
T KOG4150|consen 511 VVEVSHLFAEMVQ-HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIA 589 (1034)
T ss_pred HHHHHHHHHHHHH-cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEe
Confidence 2333333332 366999999999999877655433 221 3567789999999999999999999999999
Q ss_pred ccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEE
Q 039378 486 TDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFF 533 (600)
Q Consensus 486 T~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~ 533 (600)
|++++.||||.+++.|++.++|.|.+.+.|..|||||..++..++.+.
T Consensus 590 TNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva 637 (1034)
T KOG4150|consen 590 TNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVA 637 (1034)
T ss_pred cchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEE
Confidence 999999999999999999999999999999999999998876665544
No 147
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.77 E-value=1.9e-18 Score=135.94 Aligned_cols=78 Identities=42% Similarity=0.785 Sum_probs=75.5
Q ss_pred HHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCC
Q 039378 447 NMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAG 524 (600)
Q Consensus 447 ~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g 524 (600)
++|+..++.+..+||++++.+|..+++.|+.+...|||||+++++|+|+|.+++||++++|+|+..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999987
No 148
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.75 E-value=1.1e-15 Score=173.77 Aligned_cols=121 Identities=16% Similarity=0.188 Sum_probs=87.3
Q ss_pred HHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCC--eEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCC
Q 039378 416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGW--KVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGL 493 (600)
Q Consensus 416 ~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~--~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gl 493 (600)
.+...+..+....++++|||++|......++..|..... ....+.-++....|.++++.|+.+...||++|..+..||
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGV 818 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGI 818 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCcc
Confidence 444445445545578999999999999999999975422 122232244445689999999998888999999999999
Q ss_pred CCCCc--CEEEEcCCCC-Ch-----------------------------hhHHHHhhhccCCCCccEEEEEEcCC
Q 039378 494 DIPDV--EVVINYSFPL-TT-----------------------------EDYVHRIGRTGRAGKKGVSHTFFTNH 536 (600)
Q Consensus 494 di~~v--~~VI~~d~p~-s~-----------------------------~~y~qr~GR~gR~g~~g~~~~~~~~~ 536 (600)
|+|+- ++||+..+|. +| ..+.|.+||.-|.....-++++++.+
T Consensus 819 D~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 819 DIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 99974 7888877664 11 22358889999987654456666654
No 149
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.73 E-value=7.6e-17 Score=161.31 Aligned_cols=267 Identities=22% Similarity=0.274 Sum_probs=175.6
Q ss_pred EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHH
Q 039378 218 FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQ 297 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 297 (600)
++-+|||.||||.- +++++..-.. .++..|.|-||..+++.+...+-. +-+++|.......
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~aks-----------GvycGPLrLLA~EV~~r~na~gip----CdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKSAKS-----------GVYCGPLRLLAHEVYDRLNALGIP----CDLLTGEERRFVL 254 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhhhcc-----------ceecchHHHHHHHHHHHhhhcCCC----ccccccceeeecC
Confidence 55679999999975 5677665543 388999999999999999998744 4445554322211
Q ss_pred HHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChH-HHHHHHHhcCcCCcEEEEeccCChhHHHH
Q 039378 298 ITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEE-PVRFILSKISLARQMVMFSATWPIEVHKL 376 (600)
Q Consensus 298 ~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~-~~~~il~~~~~~~q~i~~SATl~~~~~~~ 376 (600)
.. ...++.+-||-++. . .-..+++.||||...|.+...+- +.+.++.......++.+= +.+-.+
T Consensus 255 ~~--~~~a~hvScTVEM~-------s-v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe-----psvldl 319 (700)
T KOG0953|consen 255 DN--GNPAQHVSCTVEMV-------S-VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE-----PSVLDL 319 (700)
T ss_pred CC--CCcccceEEEEEEe-------e-cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC-----chHHHH
Confidence 10 11256777786654 1 13468999999999998865443 333444433333332221 333445
Q ss_pred HHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCe-
Q 039378 377 AEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWK- 455 (600)
Q Consensus 377 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~- 455 (600)
++..+....-.+.+. .+.....-.-...++.-+..+ ..|- -|.|-|++....+...+...+..
T Consensus 320 V~~i~k~TGd~vev~------------~YeRl~pL~v~~~~~~sl~nl---k~GD-CvV~FSkk~I~~~k~kIE~~g~~k 383 (700)
T KOG0953|consen 320 VRKILKMTGDDVEVR------------EYERLSPLVVEETALGSLSNL---KPGD-CVVAFSKKDIFTVKKKIEKAGNHK 383 (700)
T ss_pred HHHHHhhcCCeeEEE------------eecccCcceehhhhhhhhccC---CCCC-eEEEeehhhHHHHHHHHHHhcCcc
Confidence 555442222222211 111111111112233333333 2232 33466888999999999888665
Q ss_pred EEEEcCCCCHHHHHHHHHHHhc--CCCCEEEeccccccCCCCCCcCEEEEcCC---------CCChhhHHHHhhhccCCC
Q 039378 456 VVAIHGKKAQHERTKSLSLFKE--GTCPLMVATDVAARGLDIPDVEVVINYSF---------PLTTEDYVHRIGRTGRAG 524 (600)
Q Consensus 456 ~~~l~~~~~~~~r~~~~~~F~~--g~~~vLvaT~~~~~Gldi~~v~~VI~~d~---------p~s~~~y~qr~GR~gR~g 524 (600)
+++++|++|+..|..--..|++ +.+.||||||+.++|||+ +++.||+|++ |....+..|.+|||||.|
T Consensus 384 ~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~ 462 (700)
T KOG0953|consen 384 CAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFG 462 (700)
T ss_pred eEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccc
Confidence 9999999999999999999997 899999999999999999 8999999885 456778899999999987
Q ss_pred C---ccEEEEEEcC
Q 039378 525 K---KGVSHTFFTN 535 (600)
Q Consensus 525 ~---~g~~~~~~~~ 535 (600)
. .|.+.++..+
T Consensus 463 s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 463 SKYPQGEVTTLHSE 476 (700)
T ss_pred cCCcCceEEEeeHh
Confidence 4 4777776654
No 150
>COG4889 Predicted helicase [General function prediction only]
Probab=99.73 E-value=6.1e-17 Score=168.94 Aligned_cols=313 Identities=17% Similarity=0.214 Sum_probs=184.8
Q ss_pred CCCCCcHHHHHHhhhhhcC----CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNG----RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYD 272 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~----~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~ 272 (600)
.-.+|+|+|++||...+.| ...-+.+.+|+|||+.. +-+...+... ++|+++|+..|..|..+
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~~------------~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAAA------------RILFLVPSISLLSQTLR 224 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhhh------------heEeecchHHHHHHHHH
Confidence 4568999999999998876 23556688999999984 4455555442 27999999999999888
Q ss_pred HHHHhcCCCCceEEEEeCCCChHHH--------------------H-----HHHhcCCcEEEEchHHHHHHHHccCCCcc
Q 039378 273 VLNDAGKPCGVKSVCVYGGTSKQPQ--------------------I-----TALRSGVDIVIGTPGRLIDLIEMNVCHLS 327 (600)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~~~~--------------------~-----~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~ 327 (600)
.+..-.. ..++...++........ . ..-..+--||++|+..+...-......+.
T Consensus 225 ew~~~~~-l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~ 303 (1518)
T COG4889 225 EWTAQKE-LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLD 303 (1518)
T ss_pred HHhhccC-ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCC
Confidence 7775432 33555555443221100 0 01113467999999999877666666788
Q ss_pred ceEEEEEcccchhhcCCChHHHHHHHHhcC-----cCCcEEEEeccCChhHHHHHH------------------------
Q 039378 328 EVSFVVLDEADRMLDMGFEEPVRFILSKIS-----LARQMVMFSATWPIEVHKLAE------------------------ 378 (600)
Q Consensus 328 ~~~~lViDEah~l~~~~~~~~~~~il~~~~-----~~~q~i~~SATl~~~~~~~~~------------------------ 378 (600)
.+++||+||||+-........=...+.++. +....+.|+||+.-.-+..-.
T Consensus 304 ~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~r 383 (1518)
T COG4889 304 EFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHR 383 (1518)
T ss_pred CccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhc
Confidence 999999999998653211000000111111 123467788885321111100
Q ss_pred --------HhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHH---HHHhh---------------cCCCeE
Q 039378 379 --------EYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALL---EKYHK---------------SQRNRV 432 (600)
Q Consensus 379 --------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~---------------~~~~~~ 432 (600)
+-+.....+++............................-.++ .-+.+ .+..+.
T Consensus 384 l~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RA 463 (1518)
T COG4889 384 LGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRA 463 (1518)
T ss_pred ccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHH
Confidence 0000000011100000000000000000000011111111111 11111 112467
Q ss_pred EEEEeehhcHHHHHHHHHh-------------CCC--eEEEEcCCCCHHHHHHHHHH---HhcCCCCEEEeccccccCCC
Q 039378 433 LVFALYQLEADRLENMLRR-------------SGW--KVVAIHGKKAQHERTKSLSL---FKEGTCPLMVATDVAARGLD 494 (600)
Q Consensus 433 lVF~~s~~~~~~l~~~L~~-------------~~~--~~~~l~~~~~~~~r~~~~~~---F~~g~~~vLvaT~~~~~Gld 494 (600)
|-||.++++...++..+.. .++ .+-.+.|.|...+|...+.. |....++||---..++.|+|
T Consensus 464 IaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVD 543 (1518)
T COG4889 464 IAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVD 543 (1518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCC
Confidence 8899999988888776532 233 45556689999999655543 45678889988899999999
Q ss_pred CCCcCEEEEcCCCCChhhHHHHhhhccCC
Q 039378 495 IPDVEVVINYSFPLTTEDYVHRIGRTGRA 523 (600)
Q Consensus 495 i~~v~~VI~~d~p~s~~~y~qr~GR~gR~ 523 (600)
+|.++.||+|++-.++.+.+|.+||+-|-
T Consensus 544 VPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 544 VPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred ccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999994
No 151
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.69 E-value=7.5e-16 Score=136.17 Aligned_cols=144 Identities=41% Similarity=0.524 Sum_probs=108.0
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChH
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQ 295 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 295 (600)
+++++.++||+|||.+++..+........ ..+++|++|++.++.|+.+.+..+... ++.+..+.++....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~---------~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 70 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK---------GGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIK 70 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc---------CCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchh
Confidence 36899999999999987666555443311 345899999999999999999988765 56677777766666
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccC
Q 039378 296 PQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATW 369 (600)
Q Consensus 296 ~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl 369 (600)
..........+|+++|++.+...+.........+++|||||+|.+....+...............+++++|||+
T Consensus 71 ~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 71 QQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55555566799999999999887766554566789999999999987644333222344455677899999995
No 152
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.68 E-value=1.7e-15 Score=175.22 Aligned_cols=136 Identities=20% Similarity=0.314 Sum_probs=111.8
Q ss_pred chHHHHHHHH-HHHhhcCCC--eEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC--CCCEEEec
Q 039378 412 SRDQRLLALL-EKYHKSQRN--RVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEG--TCPLMVAT 486 (600)
Q Consensus 412 ~~~~~l~~~l-~~~~~~~~~--~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g--~~~vLvaT 486 (600)
.+...+.+++ ...... +. ++|||++.....+.+...|...++.+..++|+++...|...++.|.++ ...+|+++
T Consensus 692 ~k~~~l~~ll~~~~~~~-~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ 770 (866)
T COG0553 692 GKLQALDELLLDKLLEE-GHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSL 770 (866)
T ss_pred hHHHHHHHHHHHHHHhh-cccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEe
Confidence 4455566666 344333 44 999999999999999999999999999999999999999999999986 45577888
Q ss_pred cccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHH
Q 039378 487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVL 548 (600)
Q Consensus 487 ~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l 548 (600)
.+++.|+|+...++||+||++|++....|+..|++|.|++..+.++-..-...+.+.|....
T Consensus 771 kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~ 832 (866)
T COG0553 771 KAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQ 832 (866)
T ss_pred cccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776655444444444444433
No 153
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=9.5e-15 Score=158.57 Aligned_cols=138 Identities=20% Similarity=0.231 Sum_probs=105.9
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CCEEEecccc
Q 039378 411 RSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT-CPLMVATDVA 489 (600)
Q Consensus 411 ~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~-~~vLvaT~~~ 489 (600)
..+...++.-+..+.. .+.|+||-+.|++..+.|+++|...|++.-+|++..-..+-.-+-+ .|. -.|-|||+++
T Consensus 611 ~eK~~Aii~ei~~~~~-~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNMA 686 (1112)
T PRK12901 611 REKYNAVIEEITELSE-AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNMA 686 (1112)
T ss_pred HHHHHHHHHHHHHHHH-CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccCc
Confidence 3455566665555543 4789999999999999999999999999888888754444333323 343 3499999999
Q ss_pred ccCCCCC--------CcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHH----HHHHHHHHHhc
Q 039378 490 ARGLDIP--------DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALA----GELVNVLREAR 552 (600)
Q Consensus 490 ~~Gldi~--------~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~----~~i~~~l~~~~ 552 (600)
+||-||. +==|||-...+.|....-|-.||+||.|.+|.+..|++-+|.-+- ..+..++...+
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fgs~ri~~~m~~~g 761 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMG 761 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHHHhhCcHHHHHHHHHcC
Confidence 9999996 223788899999999999999999999999999999998886542 34555555443
No 154
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.65 E-value=9.5e-14 Score=153.20 Aligned_cols=117 Identities=20% Similarity=0.347 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHHHh----cCCCCEEEecccc
Q 039378 415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS-GWKVVAIHGKKAQHERTKSLSLFK----EGTCPLMVATDVA 489 (600)
Q Consensus 415 ~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~F~----~g~~~vLvaT~~~ 489 (600)
..+...+..+.. ..+++|||++|...+..++..|... +.. ...+|. ..|..+++.|+ .|...||++|..+
T Consensus 521 ~~~~~~i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 521 AEMAEFLPELLE-KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 344455544444 4566999999999999999998743 333 444554 24677887776 4677899999999
Q ss_pred ccCCCCCC--cCEEEEcCCCC----Ch--------------------------hhHHHHhhhccCCCCccEEEEEEcCC
Q 039378 490 ARGLDIPD--VEVVINYSFPL----TT--------------------------EDYVHRIGRTGRAGKKGVSHTFFTNH 536 (600)
Q Consensus 490 ~~Gldi~~--v~~VI~~d~p~----s~--------------------------~~y~qr~GR~gR~g~~g~~~~~~~~~ 536 (600)
..|||+|+ +++||+..+|. ++ ..+.|.+||.-|....--++++++++
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred cccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 99999997 68899877663 11 11247888998876554455555554
No 155
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.65 E-value=9.1e-15 Score=158.41 Aligned_cols=316 Identities=19% Similarity=0.229 Sum_probs=206.2
Q ss_pred CCCCcHHHHHHhhhhhcCC-cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHH-
Q 039378 198 FKNPSPIQSHAWPFLLNGR-DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN- 275 (600)
Q Consensus 198 ~~~~~~~Q~~~i~~il~~~-d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~- 275 (600)
|....|+|.++++.+.+.+ ++++++|+|||||.++-++++. +....++++++|.-+.+..++..|.
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------------~~~~~~~vyi~p~~~i~~~~~~~w~~ 1208 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------------PDTIGRAVYIAPLEEIADEQYRDWEK 1208 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------------CccceEEEEecchHHHHHHHHHHHHH
Confidence 4455899999999999876 5899999999999997776554 1234568999999999877776655
Q ss_pred HhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChH------HH
Q 039378 276 DAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEE------PV 349 (600)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~------~~ 349 (600)
++....|..++.+.|..+.. ..+....+|+|+||+++-.+ + ....+++.|.||.|.+.+. ++. .+
T Consensus 1209 ~f~~~~G~~~~~l~ge~s~~---lkl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~ 1279 (1674)
T KOG0951|consen 1209 KFSKLLGLRIVKLTGETSLD---LKLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGV-YGAVYEVICSM 1279 (1674)
T ss_pred hhccccCceEEecCCccccc---hHHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhccc-CCceEEEEeeH
Confidence 45666677777777665543 23344579999999998554 2 5778999999999988743 211 15
Q ss_pred HHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCe-eEEEEEecCcchHHHH----HHHHHHH
Q 039378 350 RFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDV-MQIVEVLDDRSRDQRL----LALLEKY 424 (600)
Q Consensus 350 ~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l----~~~l~~~ 424 (600)
++|-..+-+..+++.+|..+... +.+ ..+ .....+...+.....+..+ .+.+...........+ ...+..+
T Consensus 1280 r~ia~q~~k~ir~v~ls~~lana-~d~--ig~-s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~ 1355 (1674)
T KOG0951|consen 1280 RYIASQLEKKIRVVALSSSLANA-RDL--IGA-SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRH 1355 (1674)
T ss_pred HHHHHHHHhheeEEEeehhhccc-hhh--ccc-cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHH
Confidence 55555666667788998887643 222 122 1222222222221111111 1112222222222211 1122222
Q ss_pred hhcCCCeEEEEEeehhcHHHHHHHHHhC----------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCCE
Q 039378 425 HKSQRNRVLVFALYQLEADRLENMLRRS----------------------GWKVVAIHGKKAQHERTKSLSLFKEGTCPL 482 (600)
Q Consensus 425 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~----------------------~~~~~~l~~~~~~~~r~~~~~~F~~g~~~v 482 (600)
. ..+.+.+||+++++.+..++.-|-.. ..+.++=|.+|+..+...+-..|..|.+.|
T Consensus 1356 a-~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v 1434 (1674)
T KOG0951|consen 1356 A-GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQV 1434 (1674)
T ss_pred h-cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEE
Confidence 2 34779999999999998776543210 122233389999999999999999999999
Q ss_pred EEeccccccCCCCCCcCEEE----EcC------CCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHH
Q 039378 483 MVATDVAARGLDIPDVEVVI----NYS------FPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGE 543 (600)
Q Consensus 483 LvaT~~~~~Gldi~~v~~VI----~~d------~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~ 543 (600)
+|...- ..|+-...--+|| .|| .+......+|++|+|.| .|.|+++.......+++.
T Consensus 1435 ~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1435 CVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred EEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHH
Confidence 988866 7888774333333 233 35567899999999999 457888888877766543
No 156
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.65 E-value=2.1e-14 Score=159.77 Aligned_cols=121 Identities=20% Similarity=0.224 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCe-EEEEcCCCCHHHHHHHHHHHhcCCC-CEEEeccccc
Q 039378 413 RDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWK-VVAIHGKKAQHERTKSLSLFKEGTC-PLMVATDVAA 490 (600)
Q Consensus 413 ~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~~~r~~~~~~F~~g~~-~vLvaT~~~~ 490 (600)
....+...+..+....++++|||++|...+..+...|...... ....+|..+ +...++.|..+.- .++|+|..++
T Consensus 463 ~~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~ 539 (654)
T COG1199 463 LLAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFW 539 (654)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeecccc
Confidence 3444555555555556779999999999999999999876542 344555544 4478888886655 8999999999
Q ss_pred cCCCCCCc--CEEEEcCCCC------------------------------ChhhHHHHhhhccCCCCccEEEEEEcCC
Q 039378 491 RGLDIPDV--EVVINYSFPL------------------------------TTEDYVHRIGRTGRAGKKGVSHTFFTNH 536 (600)
Q Consensus 491 ~Gldi~~v--~~VI~~d~p~------------------------------s~~~y~qr~GR~gR~g~~g~~~~~~~~~ 536 (600)
.|||+++- +.||+..+|. -.....|.+||+-|.-...-++++++.+
T Consensus 540 EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 540 EGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred CcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 99999975 6788877764 1233469999999965554455555543
No 157
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.62 E-value=4.7e-15 Score=137.69 Aligned_cols=152 Identities=23% Similarity=0.187 Sum_probs=100.9
Q ss_pred CCcHHHHHHhhhhhc-------CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHH
Q 039378 200 NPSPIQSHAWPFLLN-------GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYD 272 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~-------~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~ 272 (600)
+|+++|.+++..+.+ .+.+++.+|||||||.+++.. +..+.. +++|++|+..|+.|+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~-~~~l~~-------------~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALAL-ILELAR-------------KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHH-HHHHHC-------------EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhh-hhcccc-------------ceeEecCHHHHHHHHHH
Confidence 478999999998884 578999999999999986543 333333 37999999999999999
Q ss_pred HHHHhcCCCCceEEE-----------EeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc-----------CCCccceE
Q 039378 273 VLNDAGKPCGVKSVC-----------VYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN-----------VCHLSEVS 330 (600)
Q Consensus 273 ~~~~~~~~~~~~~~~-----------~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-----------~~~l~~~~ 330 (600)
.+..+.......... ..................+++++|+..|....... ......++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T PF04851_consen 69 EFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFD 148 (184)
T ss_dssp HHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSES
T ss_pred HHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCC
Confidence 997665432111100 11111111222223445899999999998776431 12345688
Q ss_pred EEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCC
Q 039378 331 FVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWP 370 (600)
Q Consensus 331 ~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~ 370 (600)
+||+||||++.... .+..++. .....+|+||||++
T Consensus 149 ~vI~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 149 LVIIDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEEEETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred EEEEehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99999999986532 1455555 44567999999975
No 158
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.62 E-value=1.6e-15 Score=120.54 Aligned_cols=81 Identities=47% Similarity=0.833 Sum_probs=77.3
Q ss_pred HHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCC
Q 039378 444 RLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRA 523 (600)
Q Consensus 444 ~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~ 523 (600)
.++..|...++.+..+||++++.+|..++..|+.+...|||+|+++++|+|+|.+++||++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 039378 524 G 524 (600)
Q Consensus 524 g 524 (600)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 159
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.60 E-value=3.4e-13 Score=150.14 Aligned_cols=140 Identities=19% Similarity=0.254 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCC-------eEEEEcCCCCHHHHHHHHHHHhc----CCCCE
Q 039378 414 DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGW-------KVVAIHGKKAQHERTKSLSLFKE----GTCPL 482 (600)
Q Consensus 414 ~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~-------~~~~l~~~~~~~~r~~~~~~F~~----g~~~v 482 (600)
...+...+..+....++++|||++|....+.+...+...++ ....+-+ -...++..+++.|.. |.-.|
T Consensus 507 ~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gav 585 (705)
T TIGR00604 507 VRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAV 585 (705)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceE
Confidence 34555566666666678999999999999999988875432 1122222 222578899999964 45569
Q ss_pred EEec--cccccCCCCCC--cCEEEEcCCCC-Ch------------------------------hhHHHHhhhccCCCCcc
Q 039378 483 MVAT--DVAARGLDIPD--VEVVINYSFPL-TT------------------------------EDYVHRIGRTGRAGKKG 527 (600)
Q Consensus 483 LvaT--~~~~~Gldi~~--v~~VI~~d~p~-s~------------------------------~~y~qr~GR~gR~g~~g 527 (600)
|+|+ ..++.|||+++ ++.||..++|. ++ ....|.+||+-|....-
T Consensus 586 L~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~ 665 (705)
T TIGR00604 586 LLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDY 665 (705)
T ss_pred EEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCce
Confidence 9998 88999999997 68899999885 21 11248899999986554
Q ss_pred EEEEEEcCCcHhHHHHHHHHHHHhcCCCcHHHHhhh
Q 039378 528 VSHTFFTNHNKALAGELVNVLREARQVVPDALLKFG 563 (600)
Q Consensus 528 ~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l~~~~ 563 (600)
-++++++.+=.. ......+|.|+....
T Consensus 666 G~iillD~R~~~---------~~~~~~lp~W~~~~~ 692 (705)
T TIGR00604 666 GSIVLLDKRYAR---------SNKRKKLPKWIQDTI 692 (705)
T ss_pred EEEEEEehhcCC---------cchhhhcCHHHHhhc
Confidence 455665543110 012345777776543
No 160
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.52 E-value=4.1e-13 Score=146.79 Aligned_cols=91 Identities=19% Similarity=0.139 Sum_probs=70.0
Q ss_pred EEEEEeehhcHHHHHHHHHhC------CCeEEEEcCCCCHHHHHHHHHHH----------------------hc----CC
Q 039378 432 VLVFALYQLEADRLENMLRRS------GWKVVAIHGKKAQHERTKSLSLF----------------------KE----GT 479 (600)
Q Consensus 432 ~lVF~~s~~~~~~l~~~L~~~------~~~~~~l~~~~~~~~r~~~~~~F----------------------~~----g~ 479 (600)
.||-++++..+..++..|... .+.++++|+..+...|..+.+.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 477788888888888887644 24689999999888887766542 11 35
Q ss_pred CCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCC
Q 039378 480 CPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGK 525 (600)
Q Consensus 480 ~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~ 525 (600)
..|+|+|.+++.|+|+ +.+++|- -|.+....+||+||+.|.|.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 6799999999999999 5666653 24467899999999999875
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.50 E-value=3.3e-12 Score=136.40 Aligned_cols=288 Identities=16% Similarity=0.185 Sum_probs=182.9
Q ss_pred EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHH
Q 039378 218 FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQ 297 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 297 (600)
.++.+|||+|||.+ ++.-+...+..+ ..++|+|+-++.|+.++...+...+-. ++....-..+.....
T Consensus 52 ~vVRSpMGTGKTta-Li~wLk~~l~~~---------~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i~~- 119 (824)
T PF02399_consen 52 LVVRSPMGTGKTTA-LIRWLKDALKNP---------DKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYIIDG- 119 (824)
T ss_pred EEEECCCCCCcHHH-HHHHHHHhccCC---------CCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeeccccccccc-
Confidence 57789999999987 344444443332 234899999999999999999876421 221111111111110
Q ss_pred HHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHH-------HHHHHhcCcCCcEEEEeccCC
Q 039378 298 ITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPV-------RFILSKISLARQMVMFSATWP 370 (600)
Q Consensus 298 ~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~-------~~il~~~~~~~q~i~~SATl~ 370 (600)
...+-+++..+.|.++. ...+.++++|||||+-..+.+-+...+ ..+...+.....+|++-||+.
T Consensus 120 -----~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 120 -----RPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN 191 (824)
T ss_pred -----cccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC
Confidence 12467788888776653 224667999999999988765332222 223344556678999999999
Q ss_pred hhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEec------------------------------------CcchH
Q 039378 371 IEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD------------------------------------DRSRD 414 (600)
Q Consensus 371 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~ 414 (600)
....+++..+.....+.+.++......... ....++. .....
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~--R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSN--RRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDET 269 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCccc--ceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchh
Confidence 999999988775666666554421110000 0000000 01111
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCC
Q 039378 415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494 (600)
Q Consensus 415 ~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gld 494 (600)
..+-.++..+. .+.++-||+.|...++.+++........+..++|..+..+. +.| ++++|++.|.++..|++
T Consensus 270 tF~~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~S 341 (824)
T PF02399_consen 270 TFFSELLARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLS 341 (824)
T ss_pred hHHHHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEec
Confidence 22223333332 36789999999999999999999999999999987766532 222 56889999999999999
Q ss_pred CCCc--CEEEEcCCC----CChhhHHHHhhhccCCCCccEEEEEEcCC
Q 039378 495 IPDV--EVVINYSFP----LTTEDYVHRIGRTGRAGKKGVSHTFFTNH 536 (600)
Q Consensus 495 i~~v--~~VI~~d~p----~s~~~y~qr~GR~gR~g~~g~~~~~~~~~ 536 (600)
+... +-|+-|=-| .++.+.+|++||+-... ....+++++..
T Consensus 342 f~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 342 FEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred cchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 8643 334444222 24556899999997665 55666766654
No 162
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.44 E-value=8.4e-12 Score=129.39 Aligned_cols=117 Identities=14% Similarity=0.276 Sum_probs=100.9
Q ss_pred CeEEEEEeehhcHHHHHHHHHhCC------------------CeEEEEcCCCCHHHHHHHHHHHhcC--CC-CEEEeccc
Q 039378 430 NRVLVFALYQLEADRLENMLRRSG------------------WKVVAIHGKKAQHERTKSLSLFKEG--TC-PLMVATDV 488 (600)
Q Consensus 430 ~~~lVF~~s~~~~~~l~~~L~~~~------------------~~~~~l~~~~~~~~r~~~~~~F~~g--~~-~vLvaT~~ 488 (600)
.++|||.++...++.+...|.... ...+.+.|..+..+|.+.+.+|++- -. -+|++|.+
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 588999999999999999887542 3467899999999999999999863 22 48899999
Q ss_pred cccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHH
Q 039378 489 AARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546 (600)
Q Consensus 489 ~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~ 546 (600)
...|||+-+.+.+|.||.-|++---.|.+.|+.|.|+...|++|-..-|..+-+.|.+
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIyd 857 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYD 857 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999887777766666554
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.39 E-value=3.4e-12 Score=128.38 Aligned_cols=155 Identities=21% Similarity=0.165 Sum_probs=94.7
Q ss_pred HHHHHhhhhh-------------cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHH
Q 039378 204 IQSHAWPFLL-------------NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQI 270 (600)
Q Consensus 204 ~Q~~~i~~il-------------~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~ 270 (600)
+|..++.+++ ..+.+|++.++|+|||+.. +.++..+....... ....+|||||. .+..||
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~-i~~~~~l~~~~~~~-----~~~~~LIv~P~-~l~~~W 73 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITA-IALISYLKNEFPQR-----GEKKTLIVVPS-SLLSQW 73 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHH-HHHHHHHHHCCTTS-----S-S-EEEEE-T-TTHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhh-hhhhhhhhhccccc-----cccceeEeecc-chhhhh
Confidence 5888888774 2356999999999999984 44455444432211 01137999999 888999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHH-----HHHHccCCCccceEEEEEcccchhhcCCC
Q 039378 271 YDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI-----DLIEMNVCHLSEVSFVVLDEADRMLDMGF 345 (600)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~-----~~l~~~~~~l~~~~~lViDEah~l~~~~~ 345 (600)
..++.++.....+++....|...............+|+|+|++.+. .... .+...++++||+||+|.+.+.
T Consensus 74 ~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~--~l~~~~~~~vIvDEaH~~k~~-- 149 (299)
T PF00176_consen 74 KEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKE--DLKQIKWDRVIVDEAHRLKNK-- 149 (299)
T ss_dssp HHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTH--HHHTSEEEEEEETTGGGGTTT--
T ss_pred hhhhccccccccccccccccccccccccccccccceeeecccccccccccccccc--ccccccceeEEEecccccccc--
Confidence 9999999865455555555544122222223345899999999998 1111 111235999999999999654
Q ss_pred hHHHHHHHHhcCcCCcEEEEeccCC
Q 039378 346 EEPVRFILSKISLARQMVMFSATWP 370 (600)
Q Consensus 346 ~~~~~~il~~~~~~~q~i~~SATl~ 370 (600)
.......+..+. ...++++|||+-
T Consensus 150 ~s~~~~~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 150 DSKRYKALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp TSHHHHHHHCCC-ECEEEEE-SS-S
T ss_pred cccccccccccc-cceEEeeccccc
Confidence 333444444455 667899999953
No 164
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.39 E-value=1.5e-10 Score=125.81 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=89.6
Q ss_pred cCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHH---H
Q 039378 223 KTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQI---T 299 (600)
Q Consensus 223 ~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~ 299 (600)
.+|||||.+|+-. +...+.. |..+||++|...|..|+.+.|...... ..++.++++.+..+.. .
T Consensus 168 ~~GSGKTevyl~~-i~~~l~~----------Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~ 234 (665)
T PRK14873 168 LPGEDWARRLAAA-AAATLRA----------GRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWL 234 (665)
T ss_pred CCCCcHHHHHHHH-HHHHHHc----------CCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHH
Confidence 3599999997654 5555543 334899999999999999999987641 3466677776655443 3
Q ss_pred HHhcC-CcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhc--C-C---ChHHHHHHHHhcCcCCcEEEEeccCChh
Q 039378 300 ALRSG-VDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLD--M-G---FEEPVRFILSKISLARQMVMFSATWPIE 372 (600)
Q Consensus 300 ~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~--~-~---~~~~~~~il~~~~~~~q~i~~SATl~~~ 372 (600)
.+..| ..|||+|-.-+ ...+.++.+|||||=|.-.- . + +...+.. +.....+..+|+-|||.+-+
T Consensus 235 ~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~-~Ra~~~~~~lvLgSaTPSle 306 (665)
T PRK14873 235 AVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVAL-LRAHQHGCALLIGGHARTAE 306 (665)
T ss_pred HHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHH-HHHHHcCCcEEEECCCCCHH
Confidence 34444 79999996544 34688999999999995432 1 1 1122222 23334567799999997765
Q ss_pred HHHH
Q 039378 373 VHKL 376 (600)
Q Consensus 373 ~~~~ 376 (600)
....
T Consensus 307 s~~~ 310 (665)
T PRK14873 307 AQAL 310 (665)
T ss_pred HHHH
Confidence 5443
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.28 E-value=1.2e-10 Score=125.55 Aligned_cols=316 Identities=21% Similarity=0.218 Sum_probs=191.8
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+.+|..+--.+.. .-|.-+.||=|||++..+|+....+.... +.+|+..--||.--.+++..+..
T Consensus 80 ~~~dVQliG~i~lh~--g~iaEM~TGEGKTL~atlp~ylnaL~gkg-----------VhvVTvNdYLA~RDae~m~~l~~ 146 (822)
T COG0653 80 RHFDVQLLGGIVLHL--GDIAEMRTGEGKTLVATLPAYLNALAGKG-----------VHVVTVNDYLARRDAEWMGPLYE 146 (822)
T ss_pred ChhhHHHhhhhhhcC--CceeeeecCCchHHHHHHHHHHHhcCCCC-----------cEEeeehHHhhhhCHHHHHHHHH
Confidence 344566655554444 45888999999999999998776665443 68889999999988888998888
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHH-HHHHHcc------CCCccceEEEEEcccchhhc---------C
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL-IDLIEMN------VCHLSEVSFVVLDEADRMLD---------M 343 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~~~~lViDEah~l~~---------~ 343 (600)
++|+.+.+...+.......... .|||..+|...| .++++.+ ......+.+.|+||+|-++= .
T Consensus 147 ~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiIS 224 (822)
T COG0653 147 FLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIIS 224 (822)
T ss_pred HcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeee
Confidence 8899999998888665554443 389999997766 2333222 22345688999999997641 0
Q ss_pred C---C----hHHHHHHHHhcCcC--------Cc-----------------------------------------------
Q 039378 344 G---F----EEPVRFILSKISLA--------RQ----------------------------------------------- 361 (600)
Q Consensus 344 ~---~----~~~~~~il~~~~~~--------~q----------------------------------------------- 361 (600)
| . ...+..+...+... .+
T Consensus 225 G~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~ 304 (822)
T COG0653 225 GPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDV 304 (822)
T ss_pred cccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCC
Confidence 1 1 11222222211111 01
Q ss_pred --------------------------------------------------------------EEEEeccCChhHHHHHHH
Q 039378 362 --------------------------------------------------------------MVMFSATWPIEVHKLAEE 379 (600)
Q Consensus 362 --------------------------------------------------------------~i~~SATl~~~~~~~~~~ 379 (600)
+.+||+|.-.....+..-
T Consensus 305 dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~i 384 (822)
T COG0653 305 DYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVI 384 (822)
T ss_pred eeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhc
Confidence 111111111111111111
Q ss_pred hcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEE
Q 039378 380 YMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAI 459 (600)
Q Consensus 380 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l 459 (600)
|. . .++.+.........+.. -........+...++..+..... .+.|+||-+.+++..+.+++.|.+.|++...+
T Consensus 385 Y~-l--~vv~iPTnrp~~R~D~~-D~vy~t~~~K~~Aiv~~I~~~~~-~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VL 459 (822)
T COG0653 385 YG-L--DVVVIPTNRPIIRLDEP-DLVYKTEEEKFKAIVEDIKERHE-KGQPVLVGTVSIEKSELLSKLLRKAGIPHNVL 459 (822)
T ss_pred cC-C--ceeeccCCCcccCCCCc-cccccchHHHHHHHHHHHHHHHh-cCCCEEEcCcceecchhHHHHHHhcCCCceee
Confidence 10 0 00000000000000000 00111122344444444444433 47899999999999999999999999999888
Q ss_pred cCCCCHHHHHHHHHHHhcCCC-CEEEeccccccCCCCCCcC-----------EEEEcCCCCChhhHHHHhhhccCCCCcc
Q 039378 460 HGKKAQHERTKSLSLFKEGTC-PLMVATDVAARGLDIPDVE-----------VVINYSFPLTTEDYVHRIGRTGRAGKKG 527 (600)
Q Consensus 460 ~~~~~~~~r~~~~~~F~~g~~-~vLvaT~~~~~Gldi~~v~-----------~VI~~d~p~s~~~y~qr~GR~gR~g~~g 527 (600)
.+.-...+-..+-. .|.. .|-|||++++||-||.--. +||-..--.|-.---|--||+||.|-+|
T Consensus 460 NAk~h~~EA~Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG 536 (822)
T COG0653 460 NAKNHAREAEIIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPG 536 (822)
T ss_pred ccccHHHHHHHHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcc
Confidence 88766333333322 3433 4889999999999995222 3555555556555669999999999999
Q ss_pred EEEEEEcCCcH
Q 039378 528 VSHTFFTNHNK 538 (600)
Q Consensus 528 ~~~~~~~~~d~ 538 (600)
.+..|++-.|.
T Consensus 537 ~S~F~lSleD~ 547 (822)
T COG0653 537 SSRFYLSLEDD 547 (822)
T ss_pred hhhhhhhhHHH
Confidence 99888877664
No 166
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.23 E-value=1.3e-10 Score=98.73 Aligned_cols=135 Identities=19% Similarity=0.196 Sum_probs=77.6
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCCh
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~ 294 (600)
|.--++-..+|+|||.-.+--++...+.. +.++|||.|||.++..+.+.++... +++.. ..-.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~----------~~rvLvL~PTRvva~em~~aL~~~~----~~~~t---~~~~ 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR----------RLRVLVLAPTRVVAEEMYEALKGLP----VRFHT---NARM 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT----------T--EEEEESSHHHHHHHHHHTTTSS----EEEES---TTSS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc----------cCeEEEecccHHHHHHHHHHHhcCC----cccCc---eeee
Confidence 33457778999999997443344444443 3458999999999999988876432 22211 1100
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcC--cCCcEEEEeccCChh
Q 039378 295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS--LARQMVMFSATWPIE 372 (600)
Q Consensus 295 ~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~--~~~q~i~~SATl~~~ 372 (600)
. ....+.-|-++|+..+.+.+.. ...+.++++||+||||..-... -.....+..+. ....+|++|||+|..
T Consensus 67 ~----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s--IA~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 67 R----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS--IAARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp --------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH--HHHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred c----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH--HhhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 0 1123457889999999887765 5567899999999999643211 00111122121 224799999999865
Q ss_pred H
Q 039378 373 V 373 (600)
Q Consensus 373 ~ 373 (600)
.
T Consensus 140 ~ 140 (148)
T PF07652_consen 140 E 140 (148)
T ss_dssp -
T ss_pred C
Confidence 4
No 167
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.21 E-value=6.4e-11 Score=127.70 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CC-EEEeccccc
Q 039378 413 RDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT-CP-LMVATDVAA 490 (600)
Q Consensus 413 ~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~-~~-vLvaT~~~~ 490 (600)
+...+..++.....+...+++||++....+..+...|...++....+.|.|....|.+.+..|..+. .. .|++..+.+
T Consensus 523 ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~ 602 (674)
T KOG1001|consen 523 KIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGK 602 (674)
T ss_pred hhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhh
Confidence 3444444454322222249999999999999999999988999999999999999999999999553 33 456779999
Q ss_pred cCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEE
Q 039378 491 RGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHT 531 (600)
Q Consensus 491 ~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~ 531 (600)
.|+|+..+.||+..|+.|||..--|.+.|++|.|+...+.+
T Consensus 603 ~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 603 VGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999999999999999999999999876655
No 168
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.19 E-value=4.7e-09 Score=119.32 Aligned_cols=299 Identities=18% Similarity=0.212 Sum_probs=164.4
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChH
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQ 295 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 295 (600)
+..+|+--||||||+.. +.+...+... ...|.+++|+-++.|-.|+.+.|..+........ ...+..
T Consensus 274 ~~G~IWHtqGSGKTlTm-~~~A~~l~~~--------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~ 340 (962)
T COG0610 274 KGGYIWHTQGSGKTLTM-FKLARLLLEL--------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTS 340 (962)
T ss_pred CceEEEeecCCchHHHH-HHHHHHHHhc--------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHH
Confidence 35999999999999973 3333333333 2367799999999999999999999875432211 333444
Q ss_pred HHHHHHhcC-CcEEEEchHHHHHHHHcc--CCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChh
Q 039378 296 PQITALRSG-VDIVIGTPGRLIDLIEMN--VCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIE 372 (600)
Q Consensus 296 ~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~--~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~ 372 (600)
.....+..+ ..|||||...|-..+... ...-.+-=+||+||||+- + ++..-..+-..+ +....++||+|+--.
T Consensus 341 ~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS-Q--~G~~~~~~~~~~-~~a~~~gFTGTPi~~ 416 (962)
T COG0610 341 ELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS-Q--YGELAKLLKKAL-KKAIFIGFTGTPIFK 416 (962)
T ss_pred HHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc-c--ccHHHHHHHHHh-ccceEEEeeCCcccc
Confidence 444455544 489999999998777543 111223347889999984 2 222223333333 336799999996322
Q ss_pred HHHH-HHHhcCCCCeEEEECCcccccCCCeeEEEEEe-c-----------------------------------------
Q 039378 373 VHKL-AEEYMDPNPVKVVVGSEDLAANHDVMQIVEVL-D----------------------------------------- 409 (600)
Q Consensus 373 ~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~----------------------------------------- 409 (600)
-..- ....+ ...+..............+...+... .
T Consensus 417 ~d~~tt~~~f-g~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 495 (962)
T COG0610 417 EDKDTTKDVF-GDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLA 495 (962)
T ss_pred ccccchhhhh-cceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHh
Confidence 1111 01111 11221111111111101111010000 0
Q ss_pred --CcchHHHHHHHHHHHhh--cCCCeEEEEEeehhcHHHHHHHHHhCC-------------------C--eEEE--EcCC
Q 039378 410 --DRSRDQRLLALLEKYHK--SQRNRVLVFALYQLEADRLENMLRRSG-------------------W--KVVA--IHGK 462 (600)
Q Consensus 410 --~~~~~~~l~~~l~~~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~-------------------~--~~~~--l~~~ 462 (600)
.........+++..+.. ....++++.|.++..+..+........ + .... .|..
T Consensus 496 ~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 575 (962)
T COG0610 496 MLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK 575 (962)
T ss_pred cchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH
Confidence 00000111122222222 345688888888884444443332110 0 0000 0111
Q ss_pred CCHHHHHHHHHHH--hcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCC--C--CccEEEEEEc
Q 039378 463 KAQHERTKSLSLF--KEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRA--G--KKGVSHTFFT 534 (600)
Q Consensus 463 ~~~~~r~~~~~~F--~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~--g--~~g~~~~~~~ 534 (600)
.. ..+.....+| .....++||-++++-.|.|-|.++.+. .|-|.-....+|.+.|+.|. + ..|.++.|..
T Consensus 576 ~~-~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 576 LK-DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HH-HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 11 2233334443 356788999999999999999888766 67777778899999999994 3 2355555555
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.14 E-value=6.5e-10 Score=109.86 Aligned_cols=73 Identities=23% Similarity=0.158 Sum_probs=57.1
Q ss_pred CCcHHHHHH----hhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHH
Q 039378 200 NPSPIQSHA----WPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN 275 (600)
Q Consensus 200 ~~~~~Q~~~----i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~ 275 (600)
.|+|.|.+. +..+.+|.++++.||||+|||++|++|++.++....... .+.+++|+++|..+..|....++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-----~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-----QKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-----cccceeEEeccHHHHHHHHHHHH
Confidence 468999994 455667889999999999999999999988776543210 12357999999999888877777
Q ss_pred Hh
Q 039378 276 DA 277 (600)
Q Consensus 276 ~~ 277 (600)
+.
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 170
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.14 E-value=6.5e-10 Score=109.86 Aligned_cols=73 Identities=23% Similarity=0.158 Sum_probs=57.1
Q ss_pred CCcHHHHHH----hhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHH
Q 039378 200 NPSPIQSHA----WPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN 275 (600)
Q Consensus 200 ~~~~~Q~~~----i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~ 275 (600)
.|+|.|.+. +..+.+|.++++.||||+|||++|++|++.++....... .+.+++|+++|..+..|....++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-----~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-----QKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-----cccceeEEeccHHHHHHHHHHHH
Confidence 468999994 455667889999999999999999999988776543210 12357999999999888877777
Q ss_pred Hh
Q 039378 276 DA 277 (600)
Q Consensus 276 ~~ 277 (600)
+.
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 171
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.00 E-value=1.9e-09 Score=114.18 Aligned_cols=304 Identities=20% Similarity=0.235 Sum_probs=175.7
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc-CCCCceEEEEeCCC
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG-KPCGVKSVCVYGGT 292 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~-~~~~~~~~~~~~g~ 292 (600)
.++-+++-+.||.|||..+.--+|..++.+......+ +.+--|+|-.+.-+.+.+.... ...+-.++.
T Consensus 392 dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~n------a~v~qprrisaisiaerva~er~e~~g~tvgy----- 460 (1282)
T KOG0921|consen 392 ENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFN------AVVSQPRRISAISLAERVANERGEEVGETCGY----- 460 (1282)
T ss_pred cCceeeEeecccccchhHHHHHHHHHHhhcccccccc------ceeccccccchHHHHHHHHHhhHHhhcccccc-----
Confidence 4445778899999999988888888888775433222 5667788888777776655421 111111110
Q ss_pred ChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcC-CChHHHHHHHHhcCcCC-----------
Q 039378 293 SKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM-GFEEPVRFILSKISLAR----------- 360 (600)
Q Consensus 293 ~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~-~~~~~~~~il~~~~~~~----------- 360 (600)
+.+-.......---|++||-+.|++.++.. +..+.++|+||.|..--. .|...+..-+..+.+..
T Consensus 461 ~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdT 537 (1282)
T KOG0921|consen 461 NVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDT 537 (1282)
T ss_pred cccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccch
Confidence 000000000111369999999999988754 456789999999964321 12111111111122223
Q ss_pred -----------cEEEEeccCChhHHHHHHHhcCCCCeEEEECCc----------ccccCCC--eeEEEEEec--------
Q 039378 361 -----------QMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSE----------DLAANHD--VMQIVEVLD-------- 409 (600)
Q Consensus 361 -----------q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~----------~~~~~~~--~~~~~~~~~-------- 409 (600)
+..++++|+|....- ...+ ..+........ ....... -......++
T Consensus 538 d~f~~~f~~~p~~~~~grt~pvq~F~--led~-~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~ 614 (1282)
T KOG0921|consen 538 DLFTNFFSSIPDVTVHGRTFPVQSFF--LEDI-IQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTR 614 (1282)
T ss_pred hhhhhhhccccceeeccccccHHHHH--HHHh-hhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhh
Confidence 444555554432221 1111 00100000000 0000000 000000000
Q ss_pred -------CcchHHHHHHHH-HHHh-hcCCCeEEEEEeehhcHHHHHHHHHhC-------CCeEEEEcCCCCHHHHHHHHH
Q 039378 410 -------DRSRDQRLLALL-EKYH-KSQRNRVLVFALYQLEADRLENMLRRS-------GWKVVAIHGKKAQHERTKSLS 473 (600)
Q Consensus 410 -------~~~~~~~l~~~l-~~~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~l~~~~~~~~r~~~~~ 473 (600)
.......+.+.+ ..+. ..-.+-++||.+.-..+..|...|... .+.++.+|+.+...+..++.+
T Consensus 615 ~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~ 694 (1282)
T KOG0921|consen 615 TAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFE 694 (1282)
T ss_pred hhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccC
Confidence 001111122222 1111 123567999999999999998887543 357899999999999999999
Q ss_pred HHhcCCCCEEEeccccccCCCCCCcCEEEEcCC------------------CCChhhHHHHhhhccCCCCccEEEEEEcC
Q 039378 474 LFKEGTCPLMVATDVAARGLDIPDVEVVINYSF------------------PLTTEDYVHRIGRTGRAGKKGVSHTFFTN 535 (600)
Q Consensus 474 ~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~------------------p~s~~~y~qr~GR~gR~g~~g~~~~~~~~ 535 (600)
....|..+++++|.++...+.|.++.+||+.+. ..+.....||.||+||. ++|.|+.+.+.
T Consensus 695 ~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 695 PVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred cccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 999999999999999999999999888885442 33556778999999997 57888777653
No 172
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.93 E-value=8.2e-09 Score=99.17 Aligned_cols=128 Identities=24% Similarity=0.275 Sum_probs=96.8
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 199 KNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
..|+++|..++-.+..|+ |+...||=|||++..+|+....+.... |-||+.+..||..=++++..+.
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~-----------V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKG-----------VHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS------------EEEEESSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCC-----------cEEEeccHHHhhccHHHHHHHH
Confidence 378999999998887776 999999999999988888877766433 7899999999999999999998
Q ss_pred CCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHH-HHHcc------CCCccceEEEEEcccchhh
Q 039378 279 KPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLID-LIEMN------VCHLSEVSFVVLDEADRML 341 (600)
Q Consensus 279 ~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~-~l~~~------~~~l~~~~~lViDEah~l~ 341 (600)
..+|+.+..+.++........... ++|+++|...|.- +++.. ......+.++||||+|.++
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 889999999999877544333332 6999999998853 44432 1124678999999999876
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.63 E-value=1.8e-06 Score=95.86 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=51.8
Q ss_pred CcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccC
Q 039378 305 VDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATW 369 (600)
Q Consensus 305 ~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl 369 (600)
..|+++||..|..-+-.+.+.+..+..|||||||++....-...+..+...-.+..-+.+|||.+
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 68999999999887777888999999999999999987644444555555555566688999884
No 174
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.59 E-value=7.8e-09 Score=111.86 Aligned_cols=142 Identities=23% Similarity=0.300 Sum_probs=104.5
Q ss_pred CCCCcHHHHHHhhhhhcC-CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 198 FKNPSPIQSHAWPFLLNG-RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 198 ~~~~~~~Q~~~i~~il~~-~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
+....|+|.+.+..+..- .++++.+|||+|||++|.+.++..+...+. .++++++|..+|+..-.+.+..
T Consensus 925 ~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~---------~kvvyIap~kalvker~~Dw~~ 995 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG---------SKVVYIAPDKALVKERSDDWSK 995 (1230)
T ss_pred hcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC---------ccEEEEcCCchhhcccccchhh
Confidence 345667888888776654 478899999999999999887766555443 3479999999999888877777
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHc--cCCCccceEEEEEcccchhhcCCChHHHHHH
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEM--NVCHLSEVSFVVLDEADRMLDMGFEEPVRFI 352 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~--~~~~l~~~~~lViDEah~l~~~~~~~~~~~i 352 (600)
.....|++++-+.|..... ...+ ..++|+|+||+++..+.+. ....+.+++.+|+||.|.+.+. +++.++.+
T Consensus 996 r~~~~g~k~ie~tgd~~pd--~~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~i 1069 (1230)
T KOG0952|consen 996 RDELPGIKVIELTGDVTPD--VKAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVI 1069 (1230)
T ss_pred hcccCCceeEeccCccCCC--hhhe-ecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEE
Confidence 6655588888888876654 1222 2379999999999887763 3445788999999999976553 44444433
No 175
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.50 E-value=1.9e-06 Score=83.06 Aligned_cols=172 Identities=20% Similarity=0.166 Sum_probs=108.1
Q ss_pred CCCCHHHHHhhcCCCCCcHHHHHHhhhhhc----------CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCC
Q 039378 185 SKLPDDVLGCCKNFKNPSPIQSHAWPFLLN----------GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN 254 (600)
Q Consensus 185 ~~l~~~l~~~~~~~~~~~~~Q~~~i~~il~----------~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~ 254 (600)
+.||..+... ..++..|.+++-...+ ...+++.+.||.||--...--|+..+++.+.
T Consensus 26 ~~lp~~~~~~----g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~--------- 92 (303)
T PF13872_consen 26 LHLPEEVIDS----GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK--------- 92 (303)
T ss_pred cCCCHHHHhc----ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC---------
Confidence 4566665533 3467889888876542 2358888999999998644445666665532
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc---CCCcc----
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN---VCHLS---- 327 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~---~~~l~---- 327 (600)
++|+|+.+-.|.....+.+..++.. .+.+..+..-... ... .-...||++||..|....... ...+.
T Consensus 93 -r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~--~~~--~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 93 -RAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG--DII--RLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred -ceEEEECChhhhhHHHHHHHHhCCC-cccceechhhccC--cCC--CCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 3699999999999999999988754 2333222211000 001 113579999999998764321 11111
Q ss_pred -----ceEEEEEcccchhhcCCCh--------HHHHHHHHhcCcCCcEEEEeccCChhHHHH
Q 039378 328 -----EVSFVVLDEADRMLDMGFE--------EPVRFILSKISLARQMVMFSATWPIEVHKL 376 (600)
Q Consensus 328 -----~~~~lViDEah~l~~~~~~--------~~~~~il~~~~~~~q~i~~SATl~~~~~~~ 376 (600)
.=.+|||||||.+.+..-. ..+..+.+.++.. +++.+|||-..+...+
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~A-RvvY~SATgasep~Nm 227 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNA-RVVYASATGASEPRNM 227 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCC-cEEEecccccCCCcee
Confidence 1258999999999875321 2333445556554 4999999976555443
No 176
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.43 E-value=3.2e-06 Score=93.97 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=52.5
Q ss_pred CCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCC--Ccc-------EEEEEE-cCCcHhHHHHHHHHH
Q 039378 479 TCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAG--KKG-------VSHTFF-TNHNKALAGELVNVL 548 (600)
Q Consensus 479 ~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g--~~g-------~~~~~~-~~~d~~~~~~i~~~l 548 (600)
..++|++-.++..|.|.|++-.+.-+.-..|...-.|.+||.-|.. +.| ...+++ +.....++..|..-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5779999999999999999999999988888888899999998842 222 223333 334455566665555
Q ss_pred HH
Q 039378 549 RE 550 (600)
Q Consensus 549 ~~ 550 (600)
..
T Consensus 581 ~~ 582 (986)
T PRK15483 581 NS 582 (986)
T ss_pred Hh
Confidence 43
No 177
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.43 E-value=2.6e-06 Score=82.08 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=50.4
Q ss_pred CcHHHHHHhhhhhcCCc-EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 201 PSPIQSHAWPFLLNGRD-FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 201 ~~~~Q~~~i~~il~~~d-~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
+.+-|..|+..++.... .+|.||+|+|||.. +..++..+..... ......+.++||++|+...+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~--~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFK--SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH---------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchh--hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 56889999999999998 99999999999965 3344555422100 00012355689999999999999999888
No 178
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.32 E-value=1.9e-08 Score=107.46 Aligned_cols=65 Identities=28% Similarity=0.382 Sum_probs=58.8
Q ss_pred cCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhc---CCCCEEEeccccccC
Q 039378 427 SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE---GTCPLMVATDVAARG 492 (600)
Q Consensus 427 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~---g~~~vLvaT~~~~~G 492 (600)
..+++|+||.+.+.+.+.|..++...+ .+..+.|......|+..+..|+. ..+.+|+||.+.+.|
T Consensus 629 ~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 629 SSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 458899999999999999999999988 89999999999999999999983 467799999988766
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.30 E-value=2.7e-06 Score=79.26 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=71.7
Q ss_pred CCcHHHHHHhhhhhcCC--cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 200 NPSPIQSHAWPFLLNGR--DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~--d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
++++-|.+++..++.+. -+++.|+.|+|||.+ +-.+...+... +.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~----------g~~v~~~apT~~Aa~~L~~~~~-- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA----------GKRVIGLAPTNKAAKELREKTG-- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT----------T--EEEEESSHHHHHHHHHHHT--
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC----------CCeEEEECCcHHHHHHHHHhhC--
Confidence 36788999999997654 367789999999985 33333333332 3348999999988877666521
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCC----CccceEEEEEcccchhhcCCChHHHHHHH
Q 039378 278 GKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC----HLSEVSFVVLDEADRMLDMGFEEPVRFIL 353 (600)
Q Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~----~l~~~~~lViDEah~l~~~~~~~~~~~il 353 (600)
+ -..|-..++........ .+...++||||||-.+. ...+..++
T Consensus 68 -----~------------------------~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll 114 (196)
T PF13604_consen 68 -----I------------------------EAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLL 114 (196)
T ss_dssp -----S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHH
T ss_pred -----c------------------------chhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHH
Confidence 1 12233322221111111 14556799999999764 35567777
Q ss_pred HhcCc-CCcEEEEecc
Q 039378 354 SKISL-ARQMVMFSAT 368 (600)
Q Consensus 354 ~~~~~-~~q~i~~SAT 368 (600)
..+.. ..++|++.=+
T Consensus 115 ~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 115 RLAKKSGAKLILVGDP 130 (196)
T ss_dssp HHS-T-T-EEEEEE-T
T ss_pred HHHHhcCCEEEEECCc
Confidence 77766 4555555544
No 180
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.25 E-value=0.00015 Score=73.75 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=66.3
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhCCC------eEEEEcCCCCHHHHHHHHHHHh----cCCCCEEE--eccccccCCCC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRSGW------KVVAIHGKKAQHERTKSLSLFK----EGTCPLMV--ATDVAARGLDI 495 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~~~------~~~~l~~~~~~~~r~~~~~~F~----~g~~~vLv--aT~~~~~Gldi 495 (600)
.++.+++|..+.--.+.+...-...|+ .-+.+-+.-+..+-.-.+..++ .|.-.||+ +-.-.+.|+|+
T Consensus 529 vpdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF 608 (755)
T KOG1131|consen 529 VPDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDF 608 (755)
T ss_pred CCCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCccc
Confidence 467899999998877777665544432 1122223333333344444443 35555664 44677899999
Q ss_pred CCcC--EEEEcCCCCChh---------------------h---------HHHHhhhccCCCCccEEEEEEcCC
Q 039378 496 PDVE--VVINYSFPLTTE---------------------D---------YVHRIGRTGRAGKKGVSHTFFTNH 536 (600)
Q Consensus 496 ~~v~--~VI~~d~p~s~~---------------------~---------y~qr~GR~gR~g~~g~~~~~~~~~ 536 (600)
.+-. .||.++.|.-.. + -.|-.||+-|. +......+|...
T Consensus 609 ~hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~-K~dYg~mI~aDk 680 (755)
T KOG1131|consen 609 DHHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRG-KTDYGLMIFADK 680 (755)
T ss_pred ccccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhc-cccceeeEeeeh
Confidence 8765 899999985211 1 12778888885 456666666543
No 181
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.25 E-value=2.2e-06 Score=77.73 Aligned_cols=107 Identities=20% Similarity=0.265 Sum_probs=73.0
Q ss_pred cCCCeEEEEEeehhcHHHHHHHHHhCCC--eEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc--ccccCCCCCC--cCE
Q 039378 427 SQRNRVLVFALYQLEADRLENMLRRSGW--KVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD--VAARGLDIPD--VEV 500 (600)
Q Consensus 427 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~--~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~--~~~~Gldi~~--v~~ 500 (600)
..++++|||++|...++.+...+..... .+..+.. ....+..+++.|..+.-.||+++. .++.|||+++ ++.
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~ 84 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRA 84 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhe
Confidence 3468999999999999999999986531 1122222 356789999999999999999998 9999999996 778
Q ss_pred EEEcCCCCC-hh-----------------------------hHHHHhhhccCCCCccEEEEEEcC
Q 039378 501 VINYSFPLT-TE-----------------------------DYVHRIGRTGRAGKKGVSHTFFTN 535 (600)
Q Consensus 501 VI~~d~p~s-~~-----------------------------~y~qr~GR~gR~g~~g~~~~~~~~ 535 (600)
||...+|.. +. ...|.+||+-|....-.++.+++.
T Consensus 85 vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 85 VIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 999888741 11 113889999998765555555554
No 182
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.22 E-value=1.3e-05 Score=74.65 Aligned_cols=151 Identities=21% Similarity=0.226 Sum_probs=96.0
Q ss_pred ccccCCCCHHHHHhhcCCCCCcHHHHHHhhhhhc---CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceE
Q 039378 181 SFTESKLPDDVLGCCKNFKNPSPIQSHAWPFLLN---GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257 (600)
Q Consensus 181 ~~~~~~l~~~l~~~~~~~~~~~~~Q~~~i~~il~---~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~ 257 (600)
.|.....|..++=.+.+---.++.|.+....+.+ |.+.+.+.-||.|||.+ ++|++..++.+.. ..+
T Consensus 4 ~w~p~~~P~wLl~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~---------~Lv 73 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGS---------RLV 73 (229)
T ss_pred CCCchhChHHHHHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCC---------cEE
Confidence 3555556666665555444688999999998885 46899999999999998 8999988887643 235
Q ss_pred EEEcccHHHHHHHHHHHHHhcC-CCCceEE--EEeCCCChH-HH---H----HHHhcCCcEEEEchHHHHHHHHcc----
Q 039378 258 LVLSPTRELADQIYDVLNDAGK-PCGVKSV--CVYGGTSKQ-PQ---I----TALRSGVDIVIGTPGRLIDLIEMN---- 322 (600)
Q Consensus 258 liv~Ptr~La~q~~~~~~~~~~-~~~~~~~--~~~~g~~~~-~~---~----~~l~~~~~Iiv~Tp~~l~~~l~~~---- 322 (600)
-+++|. +|..|..+.+..... ..+-++. -+....... .. . ........|+++||+.++.+.-..
T Consensus 74 rviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l 152 (229)
T PF12340_consen 74 RVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERL 152 (229)
T ss_pred EEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHH
Confidence 677885 899999988876432 2222222 122222211 11 1 122234679999999887643110
Q ss_pred ---C-----------CCccceEEEEEcccchhhc
Q 039378 323 ---V-----------CHLSEVSFVVLDEADRMLD 342 (600)
Q Consensus 323 ---~-----------~~l~~~~~lViDEah~l~~ 342 (600)
. ..+.....=|+||+|.++.
T Consensus 153 ~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 153 QDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 0 0122334468899998765
No 183
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.17 E-value=4.2e-06 Score=77.29 Aligned_cols=144 Identities=19% Similarity=0.173 Sum_probs=71.3
Q ss_pred CcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCC
Q 039378 201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280 (600)
Q Consensus 201 ~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~ 280 (600)
.++.|..++..+++..-+++.||.|+|||+.++..++..+..... -+++|+-|..+.- +.+.-+-..
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~---------~kiii~Rp~v~~~----~~lGflpG~ 71 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEY---------DKIIITRPPVEAG----EDLGFLPGD 71 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS----------SEEEEEE-S--TT--------SS---
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC---------cEEEEEecCCCCc----cccccCCCC
Confidence 467899999999977778999999999999877777777665322 2357777765431 111100000
Q ss_pred CCceE-------EEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHH
Q 039378 281 CGVKS-------VCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFIL 353 (600)
Q Consensus 281 ~~~~~-------~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il 353 (600)
..-+. .-.............+.....|-+..+..+ + ...+. -.+||+|||..+. ...+..++
T Consensus 72 ~~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i----R--Grt~~-~~~iIvDEaQN~t----~~~~k~il 140 (205)
T PF02562_consen 72 LEEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFI----R--GRTFD-NAFIIVDEAQNLT----PEELKMIL 140 (205)
T ss_dssp ------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG----T--T--B--SEEEEE-SGGG------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh----c--Ccccc-ceEEEEecccCCC----HHHHHHHH
Confidence 00000 000000001111122223345556554433 1 11232 3899999999874 46788899
Q ss_pred HhcCcCCcEEEEecc
Q 039378 354 SKISLARQMVMFSAT 368 (600)
Q Consensus 354 ~~~~~~~q~i~~SAT 368 (600)
.++..+++++++.-.
T Consensus 141 TR~g~~skii~~GD~ 155 (205)
T PF02562_consen 141 TRIGEGSKIIITGDP 155 (205)
T ss_dssp TTB-TT-EEEEEE--
T ss_pred cccCCCcEEEEecCc
Confidence 999888877776654
No 184
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.11 E-value=8.1e-05 Score=80.05 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=55.0
Q ss_pred CCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCC--CCccEEE-----------EEEcCCcHhHHHHH
Q 039378 478 GTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRA--GKKGVSH-----------TFFTNHNKALAGEL 544 (600)
Q Consensus 478 g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~--g~~g~~~-----------~~~~~~d~~~~~~i 544 (600)
...++|++-.++-.|.|=|+|=.++-.....|..+=+|.+||.-|. .+.|.-+ +++...+..++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3578999999999999999999999999999999999999999994 3444333 34455566666666
Q ss_pred HHHH
Q 039378 545 VNVL 548 (600)
Q Consensus 545 ~~~l 548 (600)
..-+
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 5544
No 185
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.01 E-value=1.2e-05 Score=83.24 Aligned_cols=65 Identities=28% Similarity=0.406 Sum_probs=51.7
Q ss_pred CCcHHHHHHhhhhhcCCc-EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHH
Q 039378 200 NPSPIQSHAWPFLLNGRD-FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN 275 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d-~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~ 275 (600)
.+.+-|..|+...++.++ .++.||+|+|||... .-++..+.+.. .++||.+||...+..+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tl-vEiI~qlvk~~----------k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTL-VEIISQLVKQK----------KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeH-HHHHHHHHHcC----------CeEEEEcCchHHHHHHHHHhc
Confidence 567889999999998866 678899999999984 44556665542 348999999999999988654
No 186
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.01 E-value=5.6e-05 Score=78.85 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=62.5
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
++.++..-|..|+..+++..=.|+++|+|+|||... ..|+.++.+.. ...+||++|+...+.|+.+.+.+
T Consensus 407 ~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvts-a~IVyhl~~~~---------~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 407 NLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQH---------AGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred CchhhchHHHHHHHHHHcCCceeeecCCCCCceehh-HHHHHHHHHhc---------CCceEEEcccchhHHHHHHHHHh
Confidence 667889999999999999988999999999999873 33556665542 33489999999999999998887
Q ss_pred hcCCCCceEEEE
Q 039378 277 AGKPCGVKSVCV 288 (600)
Q Consensus 277 ~~~~~~~~~~~~ 288 (600)
.+ ++++-+
T Consensus 477 tg----LKVvRl 484 (935)
T KOG1802|consen 477 TG----LKVVRL 484 (935)
T ss_pred cC----ceEeee
Confidence 65 555544
No 187
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.00 E-value=2e-05 Score=80.79 Aligned_cols=108 Identities=16% Similarity=0.202 Sum_probs=66.7
Q ss_pred cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHH
Q 039378 217 DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQP 296 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 296 (600)
-++|.|..|||||+. ++-++..+.... .+..++++++...|...+.+.+...... +
T Consensus 3 v~~I~G~aGTGKTvl-a~~l~~~l~~~~--------~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------~----- 58 (352)
T PF09848_consen 3 VILITGGAGTGKTVL-ALNLAKELQNSE--------EGKKVLYLCGNHPLRNKLREQLAKKYNP----------K----- 58 (352)
T ss_pred EEEEEecCCcCHHHH-HHHHHHHhhccc--------cCCceEEEEecchHHHHHHHHHhhhccc----------c-----
Confidence 368889999999997 344444441111 1344799999999988888877654300 0
Q ss_pred HHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCC-------ChHHHHHHHHh
Q 039378 297 QITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMG-------FEEPVRFILSK 355 (600)
Q Consensus 297 ~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~-------~~~~~~~il~~ 355 (600)
.....+..+..+...+.........+++|||||||+|...+ ....+..++..
T Consensus 59 -------~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 59 -------LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -------hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 01233444555544333222346789999999999998732 23455555554
No 188
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.95 E-value=5.2e-05 Score=81.85 Aligned_cols=80 Identities=23% Similarity=0.303 Sum_probs=49.0
Q ss_pred cCCCeEEEEEeehhcHHHHHHHHHhCC-------CeEEEEcCCCCHHHHHHHHHHHhc--------CCCCEEEecccccc
Q 039378 427 SQRNRVLVFALYQLEADRLENMLRRSG-------WKVVAIHGKKAQHERTKSLSLFKE--------GTCPLMVATDVAAR 491 (600)
Q Consensus 427 ~~~~~~lVF~~s~~~~~~l~~~L~~~~-------~~~~~l~~~~~~~~r~~~~~~F~~--------g~~~vLvaT~~~~~ 491 (600)
.-...+|||.+++...+.+....+..+ ..-..+ .=-+..+-..++..|-+ |..-+.||-.-+++
T Consensus 559 vVp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSE 637 (945)
T KOG1132|consen 559 VVPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSE 637 (945)
T ss_pred hcccceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccC
Confidence 345679999999998888865554321 111111 11133334445555543 22335577788899
Q ss_pred CCCCCC--cCEEEEcCCC
Q 039378 492 GLDIPD--VEVVINYSFP 507 (600)
Q Consensus 492 Gldi~~--v~~VI~~d~p 507 (600)
|||+.+ .+.||..++|
T Consensus 638 GlDFsD~~~RaVI~tGlP 655 (945)
T KOG1132|consen 638 GLDFSDDNGRAVIITGLP 655 (945)
T ss_pred CCCccccCCceeEEecCC
Confidence 999975 5678988876
No 189
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.93 E-value=8.1e-05 Score=80.81 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=88.1
Q ss_pred cHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCC
Q 039378 202 SPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPC 281 (600)
Q Consensus 202 ~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~ 281 (600)
.++|+.|+-..+.++-+++.|++|+|||.+ +.-++..+..... ....++++++||...|..+.+.+.......
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~~------~~~~~i~l~APTgkAA~rL~e~~~~~~~~~ 226 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLAD------GERCRIRLAAPTGKAAARLTESLGKALRQL 226 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhcC------CCCcEEEEECCcHHHHHHHHHHHHhhhhcc
Confidence 589999999999998999999999999986 3333444433211 112457889999999999888776544322
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHH------ccCCCccceEEEEEcccchhhcCCChHHHHHHHHh
Q 039378 282 GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIE------MNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSK 355 (600)
Q Consensus 282 ~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~------~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~ 355 (600)
++. .. +......-..|-.+|+.... .+..+.-.+++||||||-.+ + ...+..++..
T Consensus 227 ~~~-----------~~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~a 288 (615)
T PRK10875 227 PLT-----------DE---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDA 288 (615)
T ss_pred ccc-----------hh---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHh
Confidence 210 00 00001112334444433211 11122345689999999965 2 3556678888
Q ss_pred cCcCCcEEEEecc
Q 039378 356 ISLARQMVMFSAT 368 (600)
Q Consensus 356 ~~~~~q~i~~SAT 368 (600)
++...++|++.=.
T Consensus 289 l~~~~rlIlvGD~ 301 (615)
T PRK10875 289 LPPHARVIFLGDR 301 (615)
T ss_pred cccCCEEEEecch
Confidence 8888888777644
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.91 E-value=8.5e-05 Score=81.60 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=53.5
Q ss_pred CCCcHHHHHHhhhhhcC-CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 199 KNPSPIQSHAWPFLLNG-RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~-~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
..+++.|..++..++.. ..+++.||+|+|||.+ +..++.++... +.++|+++||...+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-~~~ii~~~~~~----------g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT-LVELIRQLVKR----------GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH-HHHHHHHHHHc----------CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 35689999999999877 5688999999999986 34445555443 335899999999999999988764
No 191
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.89 E-value=0.00014 Score=78.86 Aligned_cols=143 Identities=15% Similarity=0.137 Sum_probs=88.7
Q ss_pred cHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCC
Q 039378 202 SPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPC 281 (600)
Q Consensus 202 ~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~ 281 (600)
.++|+.++..++.++-+++.|+.|+|||.+ +..++..+...... ...+++++++||-..|..+.+.+.......
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~-----~~~~~I~l~APTGkAA~rL~e~~~~~~~~l 220 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPK-----QGKLRIALAAPTGKAAARLAESLRKAVKNL 220 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccc-----cCCCcEEEECCcHHHHHHHHHHHHhhhccc
Confidence 379999999999999999999999999986 33334444332110 012458999999999888888776543222
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHc------cCCCccceEEEEEcccchhhcCCChHHHHHHHHh
Q 039378 282 GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEM------NVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSK 355 (600)
Q Consensus 282 ~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~------~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~ 355 (600)
... .. ......+-..|-.+|+..... ...+...+++||||||=.+- ...+..++..
T Consensus 221 ~~~----------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~a 282 (586)
T TIGR01447 221 AAA----------EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKA 282 (586)
T ss_pred ccc----------hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHh
Confidence 110 00 000012224455444432211 11223468999999998653 3456778888
Q ss_pred cCcCCcEEEEecc
Q 039378 356 ISLARQMVMFSAT 368 (600)
Q Consensus 356 ~~~~~q~i~~SAT 368 (600)
++...++|++.=.
T Consensus 283 l~~~~rlIlvGD~ 295 (586)
T TIGR01447 283 LPPNTKLILLGDK 295 (586)
T ss_pred cCCCCEEEEECCh
Confidence 8888887776644
No 192
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.74 E-value=0.00022 Score=79.62 Aligned_cols=126 Identities=17% Similarity=0.127 Sum_probs=77.5
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 199 KNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
..+++-|++++..+..++-+++.|+.|+|||.+ +-.++..+..... ...+++++||-..|..+.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~~~--------~~~v~l~ApTg~AA~~L~e~~---- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEELGG--------LLPVGLAAPTGRAAKRLGEVT---- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHcCC--------CceEEEEeCchHHHHHHHHhc----
Confidence 468999999999999888899999999999985 2223333322210 133788899988877554431
Q ss_pred CCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHc-----cCCCccceEEEEEcccchhhcCCChHHHHHHH
Q 039378 279 KPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEM-----NVCHLSEVSFVVLDEADRMLDMGFEEPVRFIL 353 (600)
Q Consensus 279 ~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~-----~~~~l~~~~~lViDEah~l~~~~~~~~~~~il 353 (600)
+.. ..|..+|+..... ........++||||||+.+.. ..+..++
T Consensus 389 ---g~~------------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll 437 (720)
T TIGR01448 389 ---GLT------------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLL 437 (720)
T ss_pred ---CCc------------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHH
Confidence 110 0122222111000 001124578999999997633 4456677
Q ss_pred HhcCcCCcEEEEecc
Q 039378 354 SKISLARQMVMFSAT 368 (600)
Q Consensus 354 ~~~~~~~q~i~~SAT 368 (600)
..++...++|++.-+
T Consensus 438 ~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 438 AALPDHARLLLVGDT 452 (720)
T ss_pred HhCCCCCEEEEECcc
Confidence 778777777776644
No 193
>PRK10536 hypothetical protein; Provisional
Probab=97.67 E-value=0.00045 Score=65.81 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=34.5
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHh
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLS 242 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~ 242 (600)
++.-.+..|...+.++.+..-+++.||+|+|||+..+..++..++.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~ 101 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH 101 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3344567899999998888788889999999999755544444433
No 194
>PF13245 AAA_19: Part of AAA domain
Probab=97.59 E-value=0.00023 Score=54.73 Aligned_cols=55 Identities=33% Similarity=0.492 Sum_probs=37.8
Q ss_pred hcCCc-EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHH
Q 039378 213 LNGRD-FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274 (600)
Q Consensus 213 l~~~d-~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~ 274 (600)
+.+.. +++.||+|||||.. ++.++.++..... .. +.++||++||+..+.++.+.+
T Consensus 7 l~~~~~~vv~g~pGtGKT~~-~~~~i~~l~~~~~-----~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 7 LAGSPLFVVQGPPGTGKTTT-LAARIAELLAARA-----DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HhhCCeEEEECCCCCCHHHH-HHHHHHHHHHHhc-----CC-CCeEEEECCCHHHHHHHHHHH
Confidence 33444 55699999999976 3445555553211 01 345899999999999998887
No 195
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.39 E-value=0.00065 Score=58.73 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=22.2
Q ss_pred EEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEecc
Q 039378 330 SFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSAT 368 (600)
Q Consensus 330 ~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 368 (600)
.+|||||+|.+.. ...+..+........-.+++++|
T Consensus 89 ~~lviDe~~~l~~---~~~l~~l~~l~~~~~~~vvl~G~ 124 (131)
T PF13401_consen 89 VLLVIDEADHLFS---DEFLEFLRSLLNESNIKVVLVGT 124 (131)
T ss_dssp EEEEEETTHHHHT---HHHHHHHHHHTCSCBEEEEEEES
T ss_pred eEEEEeChHhcCC---HHHHHHHHHHHhCCCCeEEEEEC
Confidence 7999999999741 34445554444433345556665
No 196
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.37 E-value=0.0018 Score=72.69 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=73.4
Q ss_pred CCCcHHHHHHhhhhhcC-CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 199 KNPSPIQSHAWPFLLNG-RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~-~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
..+++-|+.++..++.+ +-+++.|+.|+|||.. +-.+..++... +..+++++||--.+..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~~---------g~~V~~~ApTg~Aa~~L~~~---- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEAA---------GYRVIGAALSGKAAEGLQAE---- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHhC---------CCeEEEEeCcHHHHHHHHhc----
Confidence 46899999999999875 4578899999999985 33333333321 34478999997766555432
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhc-
Q 039378 278 GKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI- 356 (600)
Q Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~- 356 (600)
.++.. .|-.++..........+...++||||||-.+.. ..+..++...
T Consensus 416 ---~g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~~~ 464 (744)
T TIGR02768 416 ---SGIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKEAE 464 (744)
T ss_pred ---cCCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHHHH
Confidence 12211 122222211122233456789999999997643 3344455432
Q ss_pred CcCCcEEEEe
Q 039378 357 SLARQMVMFS 366 (600)
Q Consensus 357 ~~~~q~i~~S 366 (600)
....++|++.
T Consensus 465 ~~~~kliLVG 474 (744)
T TIGR02768 465 EAGAKVVLVG 474 (744)
T ss_pred hcCCEEEEEC
Confidence 3455566555
No 197
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.36 E-value=0.0016 Score=74.20 Aligned_cols=124 Identities=17% Similarity=0.097 Sum_probs=75.5
Q ss_pred CCCcHHHHHHhhhhhcCCc-EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 199 KNPSPIQSHAWPFLLNGRD-FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~~d-~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
..+++-|.+++..++.+++ +++.|..|+|||.+ +- ++..++... +..++.++||--.+..+.+.
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~-~~~~~~e~~---------G~~V~~~ApTGkAA~~L~e~---- 409 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LG-VAREAWEAA---------GYEVRGAALSGIAAENLEGG---- 409 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HH-HHHHHHHHc---------CCeEEEecCcHHHHHHHhhc----
Confidence 3689999999999998765 67889999999985 33 333333321 34578999997665544321
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhc-
Q 039378 278 GKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI- 356 (600)
Q Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~- 356 (600)
.++. -.|..+|..-...+...+...++||||||-.+.. ..+..++...
T Consensus 410 ---tGi~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~ 458 (988)
T PRK13889 410 ---SGIA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAA 458 (988)
T ss_pred ---cCcc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhh
Confidence 1221 1122233221122233466778999999996533 3445555543
Q ss_pred CcCCcEEEEecc
Q 039378 357 SLARQMVMFSAT 368 (600)
Q Consensus 357 ~~~~q~i~~SAT 368 (600)
....++|++.=+
T Consensus 459 ~~garvVLVGD~ 470 (988)
T PRK13889 459 DAGAKVVLVGDP 470 (988)
T ss_pred hCCCEEEEECCH
Confidence 445666666544
No 198
>PRK04296 thymidine kinase; Provisional
Probab=97.28 E-value=0.00039 Score=64.43 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=30.2
Q ss_pred EchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEecc
Q 039378 310 GTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSAT 368 (600)
Q Consensus 310 ~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 368 (600)
..+..++..+.. .-.++++|||||+|.+. ..++..++..+......+++++-
T Consensus 63 ~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 63 SSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred CChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 445555555443 23467899999998652 23355555554444445666554
No 199
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.27 E-value=0.00095 Score=64.48 Aligned_cols=82 Identities=17% Similarity=0.363 Sum_probs=62.2
Q ss_pred HHHHHHhcCCCCEEEeccccccCCCCCCc--------CEEEEcCCCCChhhHHHHhhhccCCCCc-cEEEEEEcCC---c
Q 039378 470 KSLSLFKEGTCPLMVATDVAARGLDIPDV--------EVVINYSFPLTTEDYVHRIGRTGRAGKK-GVSHTFFTNH---N 537 (600)
Q Consensus 470 ~~~~~F~~g~~~vLvaT~~~~~Gldi~~v--------~~VI~~d~p~s~~~y~qr~GR~gR~g~~-g~~~~~~~~~---d 537 (600)
...+.|++|+..|+|.+++++.||.+..- ++-|...+||+....+|..||++|.||. ...|.++..+ +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 55778999999999999999999998643 3456788999999999999999999984 5556655543 4
Q ss_pred HhHHHHHHHHHHHh
Q 039378 538 KALAGELVNVLREA 551 (600)
Q Consensus 538 ~~~~~~i~~~l~~~ 551 (600)
..+.-.+..-|...
T Consensus 132 ~Rfas~va~rL~sL 145 (278)
T PF13871_consen 132 RRFASTVARRLESL 145 (278)
T ss_pred HHHHHHHHHHHhhc
Confidence 44444444444443
No 200
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.20 E-value=0.0026 Score=55.53 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=39.3
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCC-CCEEEeccccccCCCCCC--cCEEEEcCCCC
Q 039378 457 VAIHGKKAQHERTKSLSLFKEGT-CPLMVATDVAARGLDIPD--VEVVINYSFPL 508 (600)
Q Consensus 457 ~~l~~~~~~~~r~~~~~~F~~g~-~~vLvaT~~~~~Gldi~~--v~~VI~~d~p~ 508 (600)
..+.-+....+...+++.|.... ..||+++..++.|||+|+ ++.||...+|.
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 34444455556788999998654 379999988999999997 46788887763
No 201
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.20 E-value=0.0018 Score=70.96 Aligned_cols=136 Identities=17% Similarity=0.122 Sum_probs=84.5
Q ss_pred CCCHHHHHhhcCCCCCcHHHHHHhhhhhcCCc-EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccH
Q 039378 186 KLPDDVLGCCKNFKNPSPIQSHAWPFLLNGRD-FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTR 264 (600)
Q Consensus 186 ~l~~~l~~~~~~~~~~~~~Q~~~i~~il~~~d-~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr 264 (600)
.+.|.+... -+..+..-|++|+-.++..+| .+|.|=+|+|||.... .++.-+... +.++|+.+=|.
T Consensus 657 ~~~p~~~~~--~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~-~LIkiL~~~----------gkkVLLtsyTh 723 (1100)
T KOG1805|consen 657 VLIPKIKKI--ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS-LLIKILVAL----------GKKVLLTSYTH 723 (1100)
T ss_pred ccCchhhHH--HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH-HHHHHHHHc----------CCeEEEEehhh
Confidence 344444432 244678899999999998876 6777999999998632 233333332 23379999998
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCCh-----------------HHHHHHHhcCCcEEEEchHHHHHHHHccCCCcc
Q 039378 265 ELADQIYDVLNDAGKPCGVKSVCVYGGTSK-----------------QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLS 327 (600)
Q Consensus 265 ~La~q~~~~~~~~~~~~~~~~~~~~~g~~~-----------------~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~ 327 (600)
..+..+.-.+..+. +...-+-.+... ..........+.||.||--.+.+.+ +..+
T Consensus 724 sAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R 795 (1100)
T KOG1805|consen 724 SAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNR 795 (1100)
T ss_pred HHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhcc
Confidence 77777766666543 221111111111 1112233345789999976655443 2456
Q ss_pred ceEEEEEcccchhhc
Q 039378 328 EVSFVVLDEADRMLD 342 (600)
Q Consensus 328 ~~~~lViDEah~l~~ 342 (600)
.|+|.|||||-.++.
T Consensus 796 ~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 796 QFDYCIIDEASQILL 810 (1100)
T ss_pred ccCEEEEcccccccc
Confidence 699999999998865
No 202
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.19 E-value=0.001 Score=74.86 Aligned_cols=165 Identities=16% Similarity=0.099 Sum_probs=93.8
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHhccc-------CccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEE
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRK-------GKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSV 286 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~-------~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~ 286 (600)
.|.+++++..+|+|||.+-+...+...-.... ....+...-.-.|||||. ++..||..++.+..... ++ +
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lK-v 449 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LK-V 449 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ce-E
Confidence 35678999999999999754433332111100 001111123347999998 77799999999987653 44 4
Q ss_pred EEeCCCChHHH--HHHHhcCCcEEEEchHHHHHHHHccC--------------CCc------cceEEEEEcccchhhcCC
Q 039378 287 CVYGGTSKQPQ--ITALRSGVDIVIGTPGRLIDLIEMNV--------------CHL------SEVSFVVLDEADRMLDMG 344 (600)
Q Consensus 287 ~~~~g~~~~~~--~~~l~~~~~Iiv~Tp~~l~~~l~~~~--------------~~l------~~~~~lViDEah~l~~~~ 344 (600)
++|-|...... ...+ -.+|||+|||..|..-+.... ..+ -.|=-|++|||..+-.
T Consensus 450 ~~Y~Girk~~~~~~~el-~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves-- 526 (1394)
T KOG0298|consen 450 LLYFGIRKTFWLSPFEL-LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES-- 526 (1394)
T ss_pred EEEechhhhcccCchhh-hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--
Confidence 44444322110 0122 238999999999977654321 000 0133488999996543
Q ss_pred ChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHH--HhcCCCC
Q 039378 345 FEEPVRFILSKISLARQMVMFSATWPIEVHKLAE--EYMDPNP 385 (600)
Q Consensus 345 ~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~--~~~~~~~ 385 (600)
-......++.+++. ...-+.|+|+-..+..+.. .|++..|
T Consensus 527 ssS~~a~M~~rL~~-in~W~VTGTPiq~Iddl~~Ll~fLk~~P 568 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLHA-INRWCVTGTPIQKIDDLFPLLEFLKLPP 568 (1394)
T ss_pred hHHHHHHHHHHhhh-hceeeecCCchhhhhhhHHHHHHhcCCC
Confidence 23444444444443 3467889996555544432 3444444
No 203
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.10 E-value=0.0015 Score=65.83 Aligned_cols=123 Identities=17% Similarity=0.115 Sum_probs=72.2
Q ss_pred CcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCC
Q 039378 201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280 (600)
Q Consensus 201 ~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~ 280 (600)
+++-|.+++.. ...+++|.|..|||||.+. +.-+.+++.... ....++|+|++|+..+..+.+++......
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l-~~ri~~ll~~~~------~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTL-LERIAYLLYEGG------VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHH-HHHHHHHHHTSS------STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHH-HHHHHHhhcccc------CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 46789999998 6778999999999999974 333444444321 12344899999999999999998885432
Q ss_pred CCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHH-HccCCCc-cceEEEEEcccc
Q 039378 281 CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLI-EMNVCHL-SEVSFVVLDEAD 338 (600)
Q Consensus 281 ~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l-~~~~~~l-~~~~~lViDEah 338 (600)
.... ................+.|+|...+...+ ....... -.-.+-++|+..
T Consensus 72 ~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 72 EQQE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CCHC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 1100 00000111112223578899998886644 3221111 122455677776
No 204
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.08 E-value=0.0028 Score=55.40 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCCC---CEEEeccc--cccCCCCCC--cCEEEEcCCCCC----h-----------------------
Q 039378 465 QHERTKSLSLFKEGTC---PLMVATDV--AARGLDIPD--VEVVINYSFPLT----T----------------------- 510 (600)
Q Consensus 465 ~~~r~~~~~~F~~g~~---~vLvaT~~--~~~Gldi~~--v~~VI~~d~p~s----~----------------------- 510 (600)
..+...+++.|+.... .||+++.- ++.|||+|+ ++.||..++|.- +
T Consensus 30 ~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 109 (142)
T smart00491 30 SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYL 109 (142)
T ss_pred CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3455788888987543 58888876 999999997 578998887731 1
Q ss_pred ----hhHHHHhhhccCCCCccEEEEEEc
Q 039378 511 ----EDYVHRIGRTGRAGKKGVSHTFFT 534 (600)
Q Consensus 511 ----~~y~qr~GR~gR~g~~g~~~~~~~ 534 (600)
....|.+||+-|....--++++++
T Consensus 110 ~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 110 FDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHHHhCccccCccceEEEEEEe
Confidence 112388889988765544555544
No 205
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.06 E-value=0.0088 Score=68.85 Aligned_cols=137 Identities=15% Similarity=0.118 Sum_probs=80.3
Q ss_pred CCCHHHHHhh-cCCCCCcHHHHHHhhhhhcC-CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEccc
Q 039378 186 KLPDDVLGCC-KNFKNPSPIQSHAWPFLLNG-RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPT 263 (600)
Q Consensus 186 ~l~~~l~~~~-~~~~~~~~~Q~~~i~~il~~-~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Pt 263 (600)
++++..+... ..-..+++-|..++..+..+ +-+++.|+.|+|||.+ +-+ +..++... +..++.++||
T Consensus 366 ~v~~~~l~a~~~~~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~-~~~~~e~~---------G~~V~g~ApT 434 (1102)
T PRK13826 366 GVREAVLAATFARHARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKA-AREAWEAA---------GYRVVGGALA 434 (1102)
T ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHH-HHHHHHHc---------CCeEEEEcCc
Confidence 3444444332 23347899999999988654 4478889999999985 333 33333321 3457889999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcC
Q 039378 264 RELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM 343 (600)
Q Consensus 264 r~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~ 343 (600)
-..+..+.+. .|+. -.|-.+|+.....+...+..-++||||||-.+..
T Consensus 435 gkAA~~L~e~-------~Gi~------------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~- 482 (1102)
T PRK13826 435 GKAAEGLEKE-------AGIQ------------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS- 482 (1102)
T ss_pred HHHHHHHHHh-------hCCC------------------------eeeHHHHHhhhccCccCCCCCcEEEEECcccCCH-
Confidence 7776655432 1221 1122222111112223466678999999996532
Q ss_pred CChHHHHHHHHhcC-cCCcEEEEecc
Q 039378 344 GFEEPVRFILSKIS-LARQMVMFSAT 368 (600)
Q Consensus 344 ~~~~~~~~il~~~~-~~~q~i~~SAT 368 (600)
..+..++.... ...++|++.=+
T Consensus 483 ---~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 483 ---RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred ---HHHHHHHHHHHhcCCEEEEECCH
Confidence 44556666654 45667766644
No 206
>PRK08181 transposase; Validated
Probab=97.04 E-value=0.0066 Score=59.19 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=18.7
Q ss_pred hhhhcCCcEEEEecCCCCchhH
Q 039378 210 PFLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 210 ~~il~~~d~i~~a~TGsGKT~~ 231 (600)
.++-.+.++++.||+|+|||..
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHL 122 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHL 122 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHH
Confidence 3566788999999999999975
No 207
>PRK06526 transposase; Provisional
Probab=97.02 E-value=0.0031 Score=61.08 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=21.3
Q ss_pred HHhhhhhcCCcEEEEecCCCCchhHh
Q 039378 207 HAWPFLLNGRDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 207 ~~i~~il~~~d~i~~a~TGsGKT~~~ 232 (600)
.+..++..+.++++.||+|+|||...
T Consensus 90 ~~~~fi~~~~nlll~Gp~GtGKThLa 115 (254)
T PRK06526 90 GTLDFVTGKENVVFLGPPGTGKTHLA 115 (254)
T ss_pred hcCchhhcCceEEEEeCCCCchHHHH
Confidence 34566777889999999999999863
No 208
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.01 E-value=0.002 Score=61.42 Aligned_cols=86 Identities=28% Similarity=0.360 Sum_probs=64.3
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCC-ChHHHHHHHhc-CCcEEEEchHHHHHHHHccCCCccceE
Q 039378 253 VNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGT-SKQPQITALRS-GVDIVIGTPGRLIDLIEMNVCHLSEVS 330 (600)
Q Consensus 253 ~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~ 330 (600)
..|.+||||..---|..+.+.++.+... +..++-++.-. ...++...+.. ...|.||||+||..+++.+.+.++++.
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 4688999999866678888888776321 12233333333 45566666663 689999999999999999999999999
Q ss_pred EEEEcccch
Q 039378 331 FVVLDEADR 339 (600)
Q Consensus 331 ~lViDEah~ 339 (600)
+||||--|.
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999998763
No 209
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.0049 Score=64.21 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=39.2
Q ss_pred cCCcEEEEchHHHHHHHHcc---CCC---ccceE-EEEEcccchhhcCC-------------ChHHHHHHHHhcCcCCcE
Q 039378 303 SGVDIVIGTPGRLIDLIEMN---VCH---LSEVS-FVVLDEADRMLDMG-------------FEEPVRFILSKISLARQM 362 (600)
Q Consensus 303 ~~~~Iiv~Tp~~l~~~l~~~---~~~---l~~~~-~lViDEah~l~~~~-------------~~~~~~~il~~~~~~~q~ 362 (600)
.+..|+++|...|...+.+. .+. +.+.. +++-||||++-... |...+...+.. .+..-+
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~-nkd~~~ 158 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ-NKDNLL 158 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc-CCCcee
Confidence 34789999999997766432 222 23333 45679999985321 22222211211 223347
Q ss_pred EEEeccCCh
Q 039378 363 VMFSATWPI 371 (600)
Q Consensus 363 i~~SATl~~ 371 (600)
+.+|||.|.
T Consensus 159 lef~at~~k 167 (812)
T COG3421 159 LEFSATIPK 167 (812)
T ss_pred ehhhhcCCc
Confidence 789999983
No 210
>PRK08116 hypothetical protein; Validated
Probab=96.97 E-value=0.011 Score=58.05 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=27.5
Q ss_pred cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHH
Q 039378 217 DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDV 273 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~ 273 (600)
.+++.|++|+|||..+ ..+.+.+.... .. ++..+..+|...+...
T Consensus 116 gl~l~G~~GtGKThLa-~aia~~l~~~~----------~~-v~~~~~~~ll~~i~~~ 160 (268)
T PRK08116 116 GLLLWGSVGTGKTYLA-ACIANELIEKG----------VP-VIFVNFPQLLNRIKST 160 (268)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHHcC----------Ce-EEEEEHHHHHHHHHHH
Confidence 4999999999999863 34555555431 11 3444555665555443
No 211
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.045 Score=56.27 Aligned_cols=129 Identities=18% Similarity=0.151 Sum_probs=66.5
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhc--ccCccCCCCCCceEEEEccc-HHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSN--RKGKAVGKRVNPLCLVLSPT-RELADQIYDVLNDAGKPCGVKSVCVYGGT 292 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~--~~~~~~~~~~~~~~liv~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~~g~ 292 (600)
..+++.||||+|||.+..-- ..++... ..+ ...++|-+-+ |.-+..+ +..++...++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKL-A~~~~~~~~~~g-------~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~------ 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKL-AAIYGINSDDKS-------LNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVK------ 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHHH-HHHHHhhhccCC-------CeEEEEeccCccHHHHHH---HHHHhhcCCcceE------
Confidence 46888999999999864322 2222211 111 1113444433 4444333 3333333334321
Q ss_pred ChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCC-ChHHHHHHHHhcCcC-CcEEEEeccCC
Q 039378 293 SKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMG-FEEPVRFILSKISLA-RQMVMFSATWP 370 (600)
Q Consensus 293 ~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~-~~~~~~~il~~~~~~-~q~i~~SATl~ 370 (600)
++.++..+...+.. +.++++||||++.++.... ....+..++...... ..++++|||..
T Consensus 238 ---------------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 238 ---------------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred ---------------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 12244455554432 4578999999999875311 123444455544433 35788999975
Q ss_pred h-hHHHHHHHh
Q 039378 371 I-EVHKLAEEY 380 (600)
Q Consensus 371 ~-~~~~~~~~~ 380 (600)
. .+...+..|
T Consensus 299 ~~~~~~~~~~~ 309 (388)
T PRK12723 299 TSDVKEIFHQF 309 (388)
T ss_pred HHHHHHHHHHh
Confidence 3 334444444
No 212
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.96 E-value=0.062 Score=66.71 Aligned_cols=238 Identities=16% Similarity=0.145 Sum_probs=124.2
Q ss_pred CCcHHHHHHhhhhhcCC--cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 200 NPSPIQSHAWPFLLNGR--DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~--d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
.+++-|+.++..++.+. -.++.++.|+|||.+ +-.+..++... +..+++++||-..+..+.+.....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~~---------G~~V~~lAPTgrAA~~L~e~~g~~ 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASEQ---------GYEIQIITAGSLSAQELRQKIPRL 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHhcch
Confidence 57899999999998764 478889999999985 33344444332 345899999988777666542211
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhc-
Q 039378 278 GKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI- 356 (600)
Q Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~- 356 (600)
.. ........+.. ..-..|...|. .....+..-++||||||-.+.. ..+..++...
T Consensus 498 A~-------------Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~ 554 (1960)
T TIGR02760 498 AS-------------TFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN----NELLKLIDKAE 554 (1960)
T ss_pred hh-------------hHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHh
Confidence 10 00000011111 11122333332 1223356778999999996633 4456666655
Q ss_pred CcCCcEEEEecc--CC----hhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCC
Q 039378 357 SLARQMVMFSAT--WP----IEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRN 430 (600)
Q Consensus 357 ~~~~q~i~~SAT--l~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 430 (600)
..+.++|++.=+ ++ ..+..++.... -+.. ..... ......+ .+.......+...+...+..+.. ...
T Consensus 555 ~~garvVlvGD~~QL~sV~aG~~f~~L~~~g--v~t~-~l~~i-~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~-~r~ 627 (1960)
T TIGR02760 555 QHNSKLILLNDSAQRQGMSAGSAIDLLKEGG--VTTY-AWVDT-KQQKASV--EISEAVDKLRVDYIASAWLDLTP-DRQ 627 (1960)
T ss_pred hcCCEEEEEcChhhcCccccchHHHHHHHCC--CcEE-Eeecc-cccCcce--eeeccCchHHHHHHHHHHHhccc-ccC
Confidence 466788877755 22 23333333211 1211 11111 1111111 11111122222233333333332 344
Q ss_pred eEEEEEeehhcHHHHHHHHHh----CC------CeEEEEc-CCCCHHHHHHHHHHHhcCC
Q 039378 431 RVLVFALYQLEADRLENMLRR----SG------WKVVAIH-GKKAQHERTKSLSLFKEGT 479 (600)
Q Consensus 431 ~~lVF~~s~~~~~~l~~~L~~----~~------~~~~~l~-~~~~~~~r~~~~~~F~~g~ 479 (600)
.++|+..+..+...|....+. .| +.+..+. ..|+..++. ....|+.|.
T Consensus 628 ~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r-~~~~Yr~Gd 686 (1960)
T TIGR02760 628 NSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRR-NAAHYKQGM 686 (1960)
T ss_pred ceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHh-hHhhcCCCC
Confidence 689999998888887766543 22 2333443 356666666 336677665
No 213
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.95 E-value=0.002 Score=63.38 Aligned_cols=146 Identities=21% Similarity=0.274 Sum_probs=79.7
Q ss_pred CCCCCcHHHHHHhhhhhcCC-c-EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGR-D-FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~-d-~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~ 274 (600)
|+.-....|.-|+..++.-. + |.+.++.|+|||+.++.+.+...+..+..+. ++|.=|+..+-..+
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~K--------iiVtRp~vpvG~dI---- 292 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRK--------IIVTRPTVPVGEDI---- 292 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhce--------EEEecCCcCccccc----
Confidence 55555677888999888764 3 6678999999999888888888777654332 45555654432110
Q ss_pred HHhcCCCCceEEEEeCCCChH---HHHHHHhcCCcEEEEchHHHHHHHHccCCCccc----------eEEEEEcccchhh
Q 039378 275 NDAGKPCGVKSVCVYGGTSKQ---PQITALRSGVDIVIGTPGRLIDLIEMNVCHLSE----------VSFVVLDEADRML 341 (600)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~~---~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~----------~~~lViDEah~l~ 341 (600)
+-..|..-.-+ +.+.. +....+.+ .-=++.+.|...+.+..+.+.. =.+||||||..+
T Consensus 293 ---GfLPG~eEeKm--~PWmq~i~DnLE~L~~---~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL- 363 (436)
T COG1875 293 ---GFLPGTEEEKM--GPWMQAIFDNLEVLFS---PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL- 363 (436)
T ss_pred ---CcCCCchhhhc--cchHHHHHhHHHHHhc---ccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc-
Confidence 00000000000 00000 00111111 0011233333343333221111 268999999987
Q ss_pred cCCChHHHHHHHHhcCcCCcEEEEe
Q 039378 342 DMGFEEPVRFILSKISLARQMVMFS 366 (600)
Q Consensus 342 ~~~~~~~~~~il~~~~~~~q~i~~S 366 (600)
-..++..|+.++....++|++.
T Consensus 364 ---TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 ---TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ---CHHHHHHHHHhccCCCEEEEcC
Confidence 4467889999998888777654
No 214
>PRK14974 cell division protein FtsY; Provisional
Probab=96.86 E-value=0.018 Score=58.01 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=37.4
Q ss_pred cceEEEEEcccchhhc-CCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhc
Q 039378 327 SEVSFVVLDEADRMLD-MGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYM 381 (600)
Q Consensus 327 ~~~~~lViDEah~l~~-~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~ 381 (600)
..+++|+||.+.++.. ......+..+...+.+...+++++||...+....+..|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 3467999999998753 224455666666666666788999987766555555554
No 215
>PRK12377 putative replication protein; Provisional
Probab=96.86 E-value=0.0064 Score=58.53 Aligned_cols=46 Identities=13% Similarity=0.286 Sum_probs=28.2
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHH
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDV 273 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~ 273 (600)
.++++.|++|+|||.. +..+...+..... . ++.++..+|..++...
T Consensus 102 ~~l~l~G~~GtGKThL-a~AIa~~l~~~g~----------~-v~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHL-AAAIGNRLLAKGR----------S-VIVVTVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHcCC----------C-eEEEEHHHHHHHHHHH
Confidence 5799999999999975 3334445443211 1 3444555776665544
No 216
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.0043 Score=63.09 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=16.4
Q ss_pred cCCcEEEEecCCCCchhHhh
Q 039378 214 NGRDFIGIAKTGSGKTIAFG 233 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~ 233 (600)
.+..+++.||||+|||....
T Consensus 136 ~g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678899999999999643
No 217
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.79 E-value=0.0026 Score=65.50 Aligned_cols=59 Identities=25% Similarity=0.345 Sum_probs=42.5
Q ss_pred CcHHHHHHhhhh------hcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHH
Q 039378 201 PSPIQSHAWPFL------LNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQI 270 (600)
Q Consensus 201 ~~~~Q~~~i~~i------l~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~ 270 (600)
+++-|+.++..+ ..+..+++.|+-|+|||.. +-++...+... +..+++++||-..|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~~---------~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRSR---------GKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhccc---------cceEEEecchHHHHHhc
Confidence 567799998887 5677899999999999984 33444444331 33489999997666554
No 218
>PRK06921 hypothetical protein; Provisional
Probab=96.75 E-value=0.014 Score=57.13 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=19.0
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHh
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLS 242 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~ 242 (600)
+..+++.|++|+|||.. +..+...+..
T Consensus 117 ~~~l~l~G~~G~GKThL-a~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHL-LTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHH-HHHHHHHHhh
Confidence 56799999999999975 2333444443
No 219
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.54 E-value=0.032 Score=53.64 Aligned_cols=48 Identities=25% Similarity=0.319 Sum_probs=27.5
Q ss_pred ccceEEEEEcccchhhcCCChH-HHHHHHHh-cCcCCcEEEEeccCChhH
Q 039378 326 LSEVSFVVLDEADRMLDMGFEE-PVRFILSK-ISLARQMVMFSATWPIEV 373 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~-~~~~il~~-~~~~~q~i~~SATl~~~~ 373 (600)
+..+++|||||++......+.. .+..|+.. ......+++.|---+.++
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 4568899999999876443433 23344443 233455666665544333
No 220
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.52 E-value=0.024 Score=49.51 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=15.0
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999974
No 221
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.48 E-value=0.0083 Score=67.72 Aligned_cols=71 Identities=17% Similarity=0.104 Sum_probs=53.9
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 199 KNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
..++|-|++++.. ....++|.|..|||||.+ ++.-+.+++.... .....+|+|+.|+..|..+.+++..+.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~~------v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRV-LTHRIAWLLSVEN------ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcCC------CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 4578999999875 346799999999999997 4445566654321 113348999999999999999998875
No 222
>PRK05642 DNA replication initiation factor; Validated
Probab=96.43 E-value=0.0095 Score=57.21 Aligned_cols=45 Identities=16% Similarity=0.311 Sum_probs=29.1
Q ss_pred cceEEEEEcccchhhcC-CChHHHHHHHHhcCcCCcEEEEeccCCh
Q 039378 327 SEVSFVVLDEADRMLDM-GFEEPVRFILSKISLARQMVMFSATWPI 371 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~-~~~~~~~~il~~~~~~~q~i~~SATl~~ 371 (600)
.++++||||++|.+... .+...+..+++.+......++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 35578999999987542 2345566677666554456677776544
No 223
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.36 E-value=0.11 Score=54.52 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=35.8
Q ss_pred EchHHHHHHHHccCCCccceEEEEEcccchhhcC-CChHHHHHHHHh-cCcCCcEEEEeccCCh-hHHHHHHHh
Q 039378 310 GTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM-GFEEPVRFILSK-ISLARQMVMFSATWPI-EVHKLAEEY 380 (600)
Q Consensus 310 ~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~-~~~~~~~~il~~-~~~~~q~i~~SATl~~-~~~~~~~~~ 380 (600)
.++..+...+.. +..+++||||-+-+.... .....+..++.. .......+++|||... .+......|
T Consensus 285 ~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 285 YDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred CCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh
Confidence 345555555542 346799999988653221 112334444442 1223447889998764 444444444
No 224
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.35 E-value=0.08 Score=56.53 Aligned_cols=123 Identities=18% Similarity=0.211 Sum_probs=81.0
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCC-------eEEEEcCCCCHHHHHHHHHHHh----cC
Q 039378 410 DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGW-------KVVAIHGKKAQHERTKSLSLFK----EG 478 (600)
Q Consensus 410 ~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~-------~~~~l~~~~~~~~r~~~~~~F~----~g 478 (600)
.......+-.++..+...-++.++||++|..-...+...+...|+ +-..+-..-+ -..+++.|. .|
T Consensus 610 s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g 686 (821)
T KOG1133|consen 610 SPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERG 686 (821)
T ss_pred ChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcC
Confidence 334445555556666555679999999999999999988876543 2222222222 355666665 34
Q ss_pred CCCEEEec--cccccCCCCCC--cCEEEEcCCCCC------------------------hhhH--------HHHhhhccC
Q 039378 479 TCPLMVAT--DVAARGLDIPD--VEVVINYSFPLT------------------------TEDY--------VHRIGRTGR 522 (600)
Q Consensus 479 ~~~vLvaT--~~~~~Gldi~~--v~~VI~~d~p~s------------------------~~~y--------~qr~GR~gR 522 (600)
.-.+|+|. .-++.|||+.+ .+.||..++|.. -+.| -|.+|||-|
T Consensus 687 ~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIR 766 (821)
T KOG1133|consen 687 RGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIR 766 (821)
T ss_pred CCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 44566665 67889999976 678888887742 1112 388999999
Q ss_pred CCCccEEEEEEcC
Q 039378 523 AGKKGVSHTFFTN 535 (600)
Q Consensus 523 ~g~~g~~~~~~~~ 535 (600)
.-+.=.++.+++.
T Consensus 767 H~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 767 HRKDYASIYLLDK 779 (821)
T ss_pred hhccceeEEEehh
Confidence 8666566666654
No 225
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.32 E-value=0.018 Score=64.23 Aligned_cols=71 Identities=18% Similarity=0.139 Sum_probs=53.0
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.+++-|.+++.. ....++|.|..|||||.+ ++.-+.+++.... ....++|+|+.|+..|..+.+++..+..
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~v-L~~Ria~Li~~~~------v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcC------CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 477889999876 346788899999999998 4445556554311 0123489999999999999999987653
No 226
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.32 E-value=0.01 Score=67.05 Aligned_cols=72 Identities=15% Similarity=0.078 Sum_probs=53.7
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 199 KNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
..++|-|++++... ...++|.|..|||||.+ ++.-+.+++.... .....+|+|+-|+..|..+.+++.++.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~v-l~~Ria~Li~~~~------v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRV-LVHRIAWLMQVEN------ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHH-HHHHHHHHHHcCC------CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 35789999998753 45789999999999997 4444555554311 012348999999999999999998875
Q ss_pred C
Q 039378 279 K 279 (600)
Q Consensus 279 ~ 279 (600)
.
T Consensus 79 ~ 79 (721)
T PRK11773 79 G 79 (721)
T ss_pred c
Confidence 3
No 227
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.31 E-value=0.0072 Score=52.42 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=14.8
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+..+++.||+|+|||..
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 45789999999999985
No 228
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.091 Score=53.49 Aligned_cols=72 Identities=8% Similarity=0.154 Sum_probs=38.8
Q ss_pred EEchHHHHHHHHccCCCccceEEEEEcccchhhcCC-ChHHHHHHHHhcCcCCcEEEEeccCCh-hHHHHHHHhc
Q 039378 309 IGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMG-FEEPVRFILSKISLARQMVMFSATWPI-EVHKLAEEYM 381 (600)
Q Consensus 309 v~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~-~~~~~~~il~~~~~~~q~i~~SATl~~-~~~~~~~~~~ 381 (600)
+.+|..+.+.+..-. ...++++|+||-+=+..... ....+..++....+..-++.+|||... .+...+..|-
T Consensus 302 ~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 302 VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred cCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 346666666554211 11257899999987654311 122333444433333446779997654 4466665554
No 229
>PHA02533 17 large terminase protein; Provisional
Probab=96.27 E-value=0.025 Score=60.82 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=83.4
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|.|+|...+..+..++-.++..+=..|||.+....++...+..+ +..+++++|++.-|..+++.++....
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~---------~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK---------DKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC---------CCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 477999999988766666677788888999976544444444322 33689999999999888888775443
Q ss_pred CCC--ceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcC
Q 039378 280 PCG--VKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357 (600)
Q Consensus 280 ~~~--~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~ 357 (600)
..+ +... +... + .....+..|..|.+.|-.. ....-.+..++|+||+|.+.+ +...+..+...+.
T Consensus 130 ~~P~l~~~~-i~~~-~--~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~la 196 (534)
T PHA02533 130 LLPDFLQPG-IVEW-N--KGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVIS 196 (534)
T ss_pred hCHHHhhcc-eeec-C--ccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHH
Confidence 221 1100 0000 0 0111123455665544221 111223567899999997654 2233334443333
Q ss_pred c--CCcEEEEecc
Q 039378 358 L--ARQMVMFSAT 368 (600)
Q Consensus 358 ~--~~q~i~~SAT 368 (600)
. ..+++++|..
T Consensus 197 sg~~~r~iiiSTp 209 (534)
T PHA02533 197 SGRSSKIIITSTP 209 (534)
T ss_pred cCCCceEEEEECC
Confidence 2 2345555555
No 230
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.23 E-value=0.018 Score=53.41 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=34.7
Q ss_pred cceEEEEEcccchhhc-CCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhc
Q 039378 327 SEVSFVVLDEADRMLD-MGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYM 381 (600)
Q Consensus 327 ~~~~~lViDEah~l~~-~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~ 381 (600)
+++++|+||-+-+... ......+..++.......-.+++|||...........+.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~ 137 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY 137 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh
Confidence 4578999999875432 112345666666666666788999998766554444443
No 231
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.21 E-value=0.024 Score=63.02 Aligned_cols=71 Identities=21% Similarity=0.180 Sum_probs=52.5
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 199 KNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
..+++-|++++-.- ..+++|.|..|||||.+ ++.-+.+++.... ..+.++|+++.|+..|..+.+++....
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~v-l~~r~ayLl~~~~------~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSV-LVARAGWLLARGQ------AQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHH-HHHHHHHHHHhCC------CCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 46889999998643 35688899999999997 4444555554321 123458999999999999999888764
No 232
>PRK06893 DNA replication initiation factor; Validated
Probab=96.20 E-value=0.014 Score=55.88 Aligned_cols=47 Identities=17% Similarity=0.324 Sum_probs=29.0
Q ss_pred ccceEEEEEcccchhhcC-CChHHHHHHHHhcCc-CCcEEEEeccCChh
Q 039378 326 LSEVSFVVLDEADRMLDM-GFEEPVRFILSKISL-ARQMVMFSATWPIE 372 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~-~~~~~~~~il~~~~~-~~q~i~~SATl~~~ 372 (600)
+.+.++|||||+|.+... .+...+..+++.... ..+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 346789999999987532 223344455555443 34567788876543
No 233
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.17 E-value=0.016 Score=55.66 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=24.6
Q ss_pred eEEEEEcccchhhcC-CChHHHHHHHHhcCc-CCcEEEEeccCCh
Q 039378 329 VSFVVLDEADRMLDM-GFEEPVRFILSKISL-ARQMVMFSATWPI 371 (600)
Q Consensus 329 ~~~lViDEah~l~~~-~~~~~~~~il~~~~~-~~q~i~~SATl~~ 371 (600)
+++|||||+|.+... .+...+..+++.+.. ....+++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 468999999987532 233444455555432 2324555665443
No 234
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.13 E-value=0.024 Score=54.20 Aligned_cols=42 Identities=12% Similarity=0.286 Sum_probs=24.3
Q ss_pred eEEEEEcccchhhcC-CChHHHHHHHHhcCcCCcEEEEeccCC
Q 039378 329 VSFVVLDEADRMLDM-GFEEPVRFILSKISLARQMVMFSATWP 370 (600)
Q Consensus 329 ~~~lViDEah~l~~~-~~~~~~~~il~~~~~~~q~i~~SATl~ 370 (600)
.++|||||+|.+... .+...+..++.........+++|++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 468999999987643 123445555554332223555666643
No 235
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.08 E-value=0.012 Score=56.78 Aligned_cols=48 Identities=15% Similarity=0.208 Sum_probs=33.4
Q ss_pred CCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCCh
Q 039378 323 VCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPI 371 (600)
Q Consensus 323 ~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~ 371 (600)
......++++|+||||.|....+ ..+..++...+....+++..--+..
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsdaq-~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDAQ-AALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCCCcceEEEEechhhhhHHHH-HHHHHHHhccccceEEEEEcCChhh
Confidence 34567789999999999976432 4456666666666677777666543
No 236
>PRK08727 hypothetical protein; Validated
Probab=96.04 E-value=0.026 Score=54.12 Aligned_cols=15 Identities=27% Similarity=0.167 Sum_probs=13.3
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+++.|++|+|||..
T Consensus 43 ~l~l~G~~G~GKThL 57 (233)
T PRK08727 43 WLYLSGPAGTGKTHL 57 (233)
T ss_pred eEEEECCCCCCHHHH
Confidence 489999999999974
No 237
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.99 E-value=0.03 Score=50.03 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=13.7
Q ss_pred ccceEEEEEcccchhhc
Q 039378 326 LSEVSFVVLDEADRMLD 342 (600)
Q Consensus 326 l~~~~~lViDEah~l~~ 342 (600)
.....++|+||.+.+..
T Consensus 83 ~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 83 RGGDDLIILDELTRLVR 99 (165)
T ss_pred CCCCEEEEEEcHHHHHH
Confidence 34678999999998764
No 238
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.97 E-value=0.039 Score=62.00 Aligned_cols=70 Identities=17% Similarity=0.110 Sum_probs=52.2
Q ss_pred CcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 201 ~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
++|-|.+++.. ...+++|.|..|||||.+ ++.-+.+++.... .....+|+|+.|+..+.++.+.+.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~-L~~ri~~ll~~~~------~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRV-ITNKIAYLIQNCG------YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 67889998875 346899999999999997 4445555554311 0123479999999999999999987654
No 239
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.96 E-value=0.22 Score=50.61 Aligned_cols=132 Identities=22% Similarity=0.267 Sum_probs=69.6
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEccc-HHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPT-RELADQIYDVLNDAGKPCGVKSVCVYGGT 292 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Pt-r~La~q~~~~~~~~~~~~~~~~~~~~~g~ 292 (600)
+++-+.+.||||.|||....=.+..+.+.... ...+||.+-| |-=|. +.++.++.-+++.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~--------~kVaiITtDtYRIGA~---EQLk~Ya~im~vp-------- 262 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKK--------KKVAIITTDTYRIGAV---EQLKTYADIMGVP-------- 262 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccC--------cceEEEEeccchhhHH---HHHHHHHHHhCCc--------
Confidence 36778899999999998632211222211111 1124666554 22222 2233333333342
Q ss_pred ChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhh-cCCChHHHHHHHHhcCcCCcEEEEeccCCh
Q 039378 293 SKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRML-DMGFEEPVRFILSKISLARQMVMFSATWPI 371 (600)
Q Consensus 293 ~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~-~~~~~~~~~~il~~~~~~~q~i~~SATl~~ 371 (600)
=.++-+|.-|...+. .+.++++|.||=+=+-. +......+..++.......-.+.+|||...
T Consensus 263 -------------~~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~ 325 (407)
T COG1419 263 -------------LEVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY 325 (407)
T ss_pred -------------eEEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch
Confidence 345566776766654 46677899999775421 111223444445444344457889998754
Q ss_pred -hHHHHHHHhc
Q 039378 372 -EVHKLAEEYM 381 (600)
Q Consensus 372 -~~~~~~~~~~ 381 (600)
++...+..|-
T Consensus 326 ~dlkei~~~f~ 336 (407)
T COG1419 326 EDLKEIIKQFS 336 (407)
T ss_pred HHHHHHHHHhc
Confidence 3444555543
No 240
>PTZ00293 thymidine kinase; Provisional
Probab=95.87 E-value=0.051 Score=50.52 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=21.8
Q ss_pred EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEccc
Q 039378 218 FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPT 263 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Pt 263 (600)
-++.|||+||||.- +|-.+.+.... +..++++-|.
T Consensus 7 ~vi~GpMfSGKTte-LLr~i~~y~~a----------g~kv~~~kp~ 41 (211)
T PTZ00293 7 SVIIGPMFSGKTTE-LMRLVKRFTYS----------EKKCVVIKYS 41 (211)
T ss_pred EEEECCCCChHHHH-HHHHHHHHHHc----------CCceEEEEec
Confidence 46789999999975 33333333222 2226888886
No 241
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.85 E-value=0.064 Score=64.95 Aligned_cols=65 Identities=20% Similarity=0.133 Sum_probs=44.4
Q ss_pred CCcHHHHHHhhhhhcCC--cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHH
Q 039378 200 NPSPIQSHAWPFLLNGR--DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIY 271 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~--d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~ 271 (600)
.+++.|..++..++.+. -+++.|..|+|||.+ +-.++..+.... ...+..++.++||--.+..+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~------~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLP------ESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhh------cccCceEEEECCcHHHHHHHH
Confidence 68999999999999864 478889999999985 222233222111 011345788999987776554
No 242
>PRK09183 transposase/IS protein; Provisional
Probab=95.79 E-value=0.06 Score=52.49 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=20.1
Q ss_pred HhhhhhcCCcEEEEecCCCCchhHh
Q 039378 208 AWPFLLNGRDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 208 ~i~~il~~~d~i~~a~TGsGKT~~~ 232 (600)
.+.++..+.++++.||+|+|||...
T Consensus 95 ~~~~i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 95 SLSFIERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred cCCchhcCCeEEEEeCCCCCHHHHH
Confidence 3445667889999999999999853
No 243
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.77 E-value=0.052 Score=57.78 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=25.3
Q ss_pred ceEEEEEcccchhhcCC-ChHHHHHHHHhcC-cCCcEEEEeccCChhHH
Q 039378 328 EVSFVVLDEADRMLDMG-FEEPVRFILSKIS-LARQMVMFSATWPIEVH 374 (600)
Q Consensus 328 ~~~~lViDEah~l~~~~-~~~~~~~il~~~~-~~~q~i~~SATl~~~~~ 374 (600)
++++|||||+|.+.... ....+..+++.+. ...++++.|...|..+.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 57799999999875432 1223444444433 33455544444444433
No 244
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.72 E-value=0.12 Score=46.86 Aligned_cols=89 Identities=24% Similarity=0.158 Sum_probs=50.0
Q ss_pred EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHH
Q 039378 218 FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQ 297 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 297 (600)
-++.+||+||||.. + +..+.+... .+-++++..|-..- . .+...+...-|...
T Consensus 7 ~~i~gpM~SGKT~e-L---l~r~~~~~~-------~g~~v~vfkp~iD~----------R---~~~~~V~Sr~G~~~--- 59 (201)
T COG1435 7 EFIYGPMFSGKTEE-L---LRRARRYKE-------AGMKVLVFKPAIDT----------R---YGVGKVSSRIGLSS--- 59 (201)
T ss_pred EEEEccCcCcchHH-H---HHHHHHHHH-------cCCeEEEEeccccc----------c---cccceeeeccCCcc---
Confidence 46789999999986 2 233222211 13347888885211 1 11222222223222
Q ss_pred HHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhh
Q 039378 298 ITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRML 341 (600)
Q Consensus 298 ~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~ 341 (600)
.-++|-.+..+.+.+....... .+++|.||||+-+.
T Consensus 60 -------~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~ 95 (201)
T COG1435 60 -------EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFD 95 (201)
T ss_pred -------cceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCC
Confidence 3566777777777776433222 28899999999743
No 245
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.70 E-value=0.052 Score=54.65 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=19.7
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHh
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLS 242 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~ 242 (600)
.+.++++.|+||+|||.. +..+...++.
T Consensus 182 ~~~~Lll~G~~GtGKThL-a~aIa~~l~~ 209 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFL-SNCIAKELLD 209 (329)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHH
Confidence 357899999999999985 2334444443
No 246
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.67 E-value=0.053 Score=54.25 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=31.0
Q ss_pred CCCCcHHHHHHhhhhh----cCC---cEEEEecCCCCchhHhhHHHHHHHHh
Q 039378 198 FKNPSPIQSHAWPFLL----NGR---DFIGIAKTGSGKTIAFGVPAMMHVLS 242 (600)
Q Consensus 198 ~~~~~~~Q~~~i~~il----~~~---d~i~~a~TGsGKT~~~~lp~l~~~~~ 242 (600)
++.++|+|..++..+. +++ -.++.||.|.||+..+ ..+...++.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC 52 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLA 52 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhC
Confidence 4578899999988766 333 4889999999999853 333444443
No 247
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.65 E-value=0.068 Score=63.90 Aligned_cols=65 Identities=23% Similarity=0.200 Sum_probs=43.9
Q ss_pred CCcHHHHHHhhhhhcC--CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHH
Q 039378 200 NPSPIQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIY 271 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~--~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~ 271 (600)
.+++-|+.++..++.+ +-+++.|..|+|||.+. -.++..+.... ...+..++.++||-..+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~------e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNMLP------ESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHHh------hccCceEEEEechHHHHHHHH
Confidence 6899999999999966 45888999999999862 11222221110 011345788999977776654
No 248
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.61 E-value=0.074 Score=51.63 Aligned_cols=53 Identities=13% Similarity=0.280 Sum_probs=36.3
Q ss_pred hhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 212 LLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 212 il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
+.++.++++.|++|+|||.. +.++.+.+... +.. ++++++.+|+.++...+..
T Consensus 102 ~~~~~nl~l~G~~G~GKThL-a~Ai~~~l~~~----------g~s-v~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHL-AIAIGNELLKA----------GIS-VLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred hccCCcEEEECCCCCcHHHH-HHHHHHHHHHc----------CCe-EEEEEHHHHHHHHHHHHhc
Confidence 33677999999999999986 34445555532 222 4566777998887776543
No 249
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.60 E-value=0.065 Score=56.66 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=27.0
Q ss_pred ccceEEEEEcccchhhcCC-ChHHHHHHHHhcCc-CCcEEEEeccCChhH
Q 039378 326 LSEVSFVVLDEADRMLDMG-FEEPVRFILSKISL-ARQMVMFSATWPIEV 373 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~-~~~~~~~il~~~~~-~~q~i~~SATl~~~~ 373 (600)
+.+.++|||||+|.+.... ....+..+++.+.. ..|+|+.|-..|..+
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 3467899999999875321 23344455555433 345555554444333
No 250
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.60 E-value=0.0069 Score=54.67 Aligned_cols=124 Identities=21% Similarity=0.253 Sum_probs=53.5
Q ss_pred EEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHH
Q 039378 219 IGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQI 298 (600)
Q Consensus 219 i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 298 (600)
++.|+=|-|||.+..+.+ ..+.... ..+++|.+|+.+-+..+++.+..-....+++....... ....
T Consensus 1 VltA~RGRGKSa~lGl~~-a~l~~~~---------~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~ 67 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAA-AALIQKG---------KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQII 67 (177)
T ss_dssp -EEE-TTSSHHHHHHHCC-CCSSS--------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCCCCHHHHHHHHH-HHHHHhc---------CceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---cccc
Confidence 578999999998644432 2221111 13489999999988888877665544333322000000 0000
Q ss_pred HHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCC
Q 039378 299 TALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWP 370 (600)
Q Consensus 299 ~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~ 370 (600)
.....+..|-+..|+.+... ....++||||||=.+ -...+..++... ..++||.|..
T Consensus 68 ~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~~~----~~vv~stTi~ 124 (177)
T PF05127_consen 68 KLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLRRF----PRVVFSTTIH 124 (177)
T ss_dssp -----CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEBS
T ss_pred ccccccceEEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHhhC----CEEEEEeecc
Confidence 00112357777888766332 123589999999876 334555554433 3778888865
No 251
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.57 E-value=0.15 Score=54.02 Aligned_cols=65 Identities=14% Similarity=0.288 Sum_probs=33.4
Q ss_pred hHHHHHHHHccCCCccceEEEEEcccchhhcCC-ChHHHHHHHHhcCcCCcEEEEeccCC-hhHHHHHHHhc
Q 039378 312 PGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMG-FEEPVRFILSKISLARQMVMFSATWP-IEVHKLAEEYM 381 (600)
Q Consensus 312 p~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~-~~~~~~~il~~~~~~~q~i~~SATl~-~~~~~~~~~~~ 381 (600)
+..|...+.. +.++++||||.+=+..... ....+..+.. ......+++++++.. ..+...+..|-
T Consensus 416 ~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~~Dl~eii~~f~ 482 (559)
T PRK12727 416 AESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHFSDLDEVVRRFA 482 (559)
T ss_pred HHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCChhHHHHHHHHHH
Confidence 3445555542 3468899999987542110 1112222222 223345788888865 34444555443
No 252
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=95.57 E-value=0.014 Score=62.69 Aligned_cols=79 Identities=16% Similarity=0.333 Sum_probs=57.8
Q ss_pred HHHHhcCCCCEEEeccccccCCCCCCcCEEE--------EcCCCCChhhHHHHhhhccCCCCc-cEEEEEEcC---CcHh
Q 039378 472 LSLFKEGTCPLMVATDVAARGLDIPDVEVVI--------NYSFPLTTEDYVHRIGRTGRAGKK-GVSHTFFTN---HNKA 539 (600)
Q Consensus 472 ~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI--------~~d~p~s~~~y~qr~GR~gR~g~~-g~~~~~~~~---~d~~ 539 (600)
-++|.+|.-.|-|-+.+++-||-+..-+.|+ -..+|||...-+|..||++|..|- +.-|+|+-. .+..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 4578889988989999999999998776665 477999999999999999998873 555555432 2444
Q ss_pred HHHHHHHHHHH
Q 039378 540 LAGELVNVLRE 550 (600)
Q Consensus 540 ~~~~i~~~l~~ 550 (600)
+..-+..-|..
T Consensus 930 FAS~VAKRLES 940 (1300)
T KOG1513|consen 930 FASIVAKRLES 940 (1300)
T ss_pred HHHHHHHHHHh
Confidence 44333333433
No 253
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.52 E-value=0.073 Score=55.81 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=17.8
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHh
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLS 242 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~ 242 (600)
+.+++.|++|+|||.. +..+...+..
T Consensus 137 n~l~l~G~~G~GKThL-~~ai~~~l~~ 162 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHL-LHAIGNEILE 162 (405)
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHHHH
Confidence 3578999999999985 2333444443
No 254
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.49 E-value=0.075 Score=56.01 Aligned_cols=59 Identities=27% Similarity=0.317 Sum_probs=40.7
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.-++|+|..|||||.+++ +=+.+++-+-.+. .....|||+.|.+.+..-+.+++=+++.
T Consensus 227 ~ilVVQGaAGSGKTtiAL-HRvAyLlY~~R~~----l~~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 227 KILVVQGAAGSGKTTIAL-HRVAYLLYGYRGP----LQAKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred CeEEEecCCCCCchhHHH-HHHHHHHhccccc----cccCceEEEcCcHHHHHHHHHhchhhcc
Confidence 348899999999999844 3344444332211 1223389999999998888888777764
No 255
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.49 E-value=0.032 Score=59.79 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=49.9
Q ss_pred HHHHHHhhhhhc-----C----CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHH
Q 039378 203 PIQSHAWPFLLN-----G----RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDV 273 (600)
Q Consensus 203 ~~Q~~~i~~il~-----~----~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~ 273 (600)
|+|.-.+-.++. | +.+++.-|=|-|||......++..++-.+ ..++.++++++++.-|..+++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g-------~~~~~i~~~A~~~~QA~~~f~~ 73 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG-------EPGAEIYCAANTRDQAKIVFDE 73 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC-------ccCceEEEEeCCHHHHHHHHHH
Confidence 678877776662 2 24888889999999864443344443321 2256689999999999999998
Q ss_pred HHHhcCC
Q 039378 274 LNDAGKP 280 (600)
Q Consensus 274 ~~~~~~~ 280 (600)
+..+...
T Consensus 74 ~~~~i~~ 80 (477)
T PF03354_consen 74 AKKMIEA 80 (477)
T ss_pred HHHHHHh
Confidence 8887643
No 256
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.47 E-value=0.12 Score=47.52 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=30.9
Q ss_pred EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 218 FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
+++.||+|+|||...+ -++...... +..+++++. .+-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~-~~~~~~~~~----------g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFAL-QFLYAGLAR----------GEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHH-HHHHHHHHC----------CCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 6889999999998533 223333332 233677764 366677777776664
No 257
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.45 E-value=0.051 Score=56.83 Aligned_cols=144 Identities=14% Similarity=0.255 Sum_probs=79.7
Q ss_pred EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHH-HHHHHHHHHHHhcCCCCceEEEEeCCCChHH
Q 039378 218 FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRE-LADQIYDVLNDAGKPCGVKSVCVYGGTSKQP 296 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~-La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 296 (600)
.++.|..|||||.+..+-++..++.... +.+++|+-|+.. |..-++..+.......++....-......
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~--------~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~-- 73 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKK--------QQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM-- 73 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCC--------CcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--
Confidence 5778999999999877777777766411 344788888877 55556666665443333321111111100
Q ss_pred HHHHHhc-CCcEEEEch-HHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcC--cCCcEEEEeccCChh
Q 039378 297 QITALRS-GVDIVIGTP-GRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS--LARQMVMFSATWPIE 372 (600)
Q Consensus 297 ~~~~l~~-~~~Iiv~Tp-~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~--~~~q~i~~SATl~~~ 372 (600)
.+ .+.. |..|++..- +.... +. ....+.++.+|||..+.. ..+..++..++ .....+++|.|++..
T Consensus 74 ~i-~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 74 EI-KILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred EE-EecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 00 0111 345555443 21111 11 223468999999998743 34455555554 222358889887654
Q ss_pred HHHHHHHhc
Q 039378 373 VHKLAEEYM 381 (600)
Q Consensus 373 ~~~~~~~~~ 381 (600)
...+...++
T Consensus 144 ~~w~~~~f~ 152 (396)
T TIGR01547 144 LHWVKKRFI 152 (396)
T ss_pred ccHHHHHHH
Confidence 455555555
No 258
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.42 E-value=0.11 Score=53.09 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=23.9
Q ss_pred cceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEecc
Q 039378 327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSAT 368 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 368 (600)
...++|||||+|.+... ....+..++...+....+| ++++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~I-l~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFI-IATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEE-EEeC
Confidence 45679999999987542 2334455555554444444 4444
No 259
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.39 E-value=0.35 Score=47.18 Aligned_cols=131 Identities=12% Similarity=0.196 Sum_probs=67.3
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceE-EEEccc-H-HHHHHHHHHHHHhcCCCCceEEEEeC
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC-LVLSPT-R-ELADQIYDVLNDAGKPCGVKSVCVYG 290 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~-liv~Pt-r-~La~q~~~~~~~~~~~~~~~~~~~~~ 290 (600)
.+..+++.+++|+|||..+.+- ...+... +..+ +|-+.+ | ..+.||....... ++.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l--~~~l~~~---------~~~v~~i~~D~~ri~~~~ql~~~~~~~----~~~~~---- 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKM--AWQFHGK---------KKTVGFITTDHSRIGTVQQLQDYVKTI----GFEVI---- 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHH--HHHHHHc---------CCeEEEEecCCCCHHHHHHHHHHhhhc----CceEE----
Confidence 3457888999999999965432 2222211 1123 343422 2 4555665443332 22211
Q ss_pred CCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcC-CChHHHHHHHHhcCcCCcEEEEeccC
Q 039378 291 GTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM-GFEEPVRFILSKISLARQMVMFSATW 369 (600)
Q Consensus 291 g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~-~~~~~~~~il~~~~~~~q~i~~SATl 369 (600)
...+|..+...+..- .....+++||||-+=+.... .....+..++....+..-++.+|||.
T Consensus 135 -----------------~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~ 196 (270)
T PRK06731 135 -----------------AVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 196 (270)
T ss_pred -----------------ecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc
Confidence 113455554444321 11246789999998765321 11223334444444444467899986
Q ss_pred Ch-hHHHHHHHhc
Q 039378 370 PI-EVHKLAEEYM 381 (600)
Q Consensus 370 ~~-~~~~~~~~~~ 381 (600)
.. +....+..|-
T Consensus 197 ~~~d~~~~~~~f~ 209 (270)
T PRK06731 197 KSKDMIEIITNFK 209 (270)
T ss_pred CHHHHHHHHHHhC
Confidence 54 5556666654
No 260
>CHL00181 cbbX CbbX; Provisional
Probab=95.37 E-value=0.23 Score=49.19 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.1
Q ss_pred cCCcEEEEecCCCCchhHhh
Q 039378 214 NGRDFIGIAKTGSGKTIAFG 233 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~ 233 (600)
.+.++++.||+|+|||..+.
T Consensus 58 ~~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34568999999999998643
No 261
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.33 E-value=0.07 Score=50.99 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=26.2
Q ss_pred ceEEEEEcccchhhcCCChHHHHHHHHhcCcCCc-EEEEeccCCh
Q 039378 328 EVSFVVLDEADRMLDMGFEEPVRFILSKISLARQ-MVMFSATWPI 371 (600)
Q Consensus 328 ~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q-~i~~SATl~~ 371 (600)
..++|||||+|.+... ....+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4568999999987543 23344455554443333 5777777553
No 262
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.30 E-value=0.12 Score=54.54 Aligned_cols=50 Identities=12% Similarity=0.254 Sum_probs=29.1
Q ss_pred cceEEEEEcccchhhcCC-ChHHHHHHHHhcC-cCCcEEEEeccCChhHHHH
Q 039378 327 SEVSFVVLDEADRMLDMG-FEEPVRFILSKIS-LARQMVMFSATWPIEVHKL 376 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~-~~~~~~~il~~~~-~~~q~i~~SATl~~~~~~~ 376 (600)
.+.++|+|||+|.+.... ....+..+++.+. ...++|+.|-+.|..+..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 467899999999986532 2334445554332 3455555555555555433
No 263
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.30 E-value=0.092 Score=56.78 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=28.8
Q ss_pred ccceEEEEEcccchhhcCC-ChHHHHHHHHhcCc-CCcEEEEeccCChhH
Q 039378 326 LSEVSFVVLDEADRMLDMG-FEEPVRFILSKISL-ARQMVMFSATWPIEV 373 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~-~~~~~~~il~~~~~-~~q~i~~SATl~~~~ 373 (600)
+.++++||||++|.+.... ....+..+++.+.. +.++|+.|-..|..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 3457899999999886532 23344455555543 456666555544444
No 264
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.29 E-value=0.093 Score=49.77 Aligned_cols=107 Identities=17% Similarity=0.238 Sum_probs=58.8
Q ss_pred cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHH
Q 039378 217 DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQP 296 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 296 (600)
.+++.|++|+|||-. +-.+.+.+..... +.+++++. ..+........+..-
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~--------~~~v~y~~-~~~f~~~~~~~~~~~------------------- 86 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHP--------GKRVVYLS-AEEFIREFADALRDG------------------- 86 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCT--------TS-EEEEE-HHHHHHHHHHHHHTT-------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccc--------cccceeec-HHHHHHHHHHHHHcc-------------------
Confidence 488999999999984 3333344443322 22355554 346655554443320
Q ss_pred HHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCC-ChHHHHHHHHhcC-cCCcEEEEeccCChhH
Q 039378 297 QITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMG-FEEPVRFILSKIS-LARQMVMFSATWPIEV 373 (600)
Q Consensus 297 ~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~-~~~~~~~il~~~~-~~~q~i~~SATl~~~~ 373 (600)
....+.+ .+..+++|+||.+|.+.... +...+..+++.+. .+.++|+.|...|..+
T Consensus 87 --------------~~~~~~~-------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 87 --------------EIEEFKD-------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp --------------SHHHHHH-------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred --------------cchhhhh-------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 1112222 24568899999999986531 2334445555443 3456777776766544
No 265
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.25 E-value=0.41 Score=49.73 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCCCchhHh
Q 039378 214 NGRDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~ 232 (600)
.+.-+.+.||||+|||...
T Consensus 190 ~g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4556788899999999964
No 266
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.22 E-value=0.033 Score=56.15 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=26.6
Q ss_pred CCcHHHHHHhhhhhcCC----cEEEEecCCCCchhHh
Q 039378 200 NPSPIQSHAWPFLLNGR----DFIGIAKTGSGKTIAF 232 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~----d~i~~a~TGsGKT~~~ 232 (600)
.++|||...+..++... -.++.||.|.|||..+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A 39 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA 39 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH
Confidence 35799999998887553 3789999999999863
No 267
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.13 E-value=0.18 Score=53.18 Aligned_cols=49 Identities=12% Similarity=0.304 Sum_probs=27.2
Q ss_pred ceEEEEEcccchhhcCC-ChHHHHHHHHhcCc-CCcEEEEeccCChhHHHH
Q 039378 328 EVSFVVLDEADRMLDMG-FEEPVRFILSKISL-ARQMVMFSATWPIEVHKL 376 (600)
Q Consensus 328 ~~~~lViDEah~l~~~~-~~~~~~~il~~~~~-~~q~i~~SATl~~~~~~~ 376 (600)
..++|+|||+|.+.+.. ....+..+++.+.. ..++|+.|-..|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 46799999999886532 22334444444433 345555444455554444
No 268
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.06 E-value=0.16 Score=53.16 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=14.5
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
.++++.||+|+|||..
T Consensus 56 ~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT 71 (394)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999986
No 269
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.05 E-value=0.074 Score=52.01 Aligned_cols=99 Identities=15% Similarity=0.302 Sum_probs=54.6
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhc-ccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh-cCCCCceEEEEeCCCC
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSN-RKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA-GKPCGVKSVCVYGGTS 293 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~-~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~-~~~~~~~~~~~~~g~~ 293 (600)
.++++.|+||.|||.. +.++... +..........|.++|-+|...-....+..+-.. +.... ...
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~--------~~~ 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR--------PRD 128 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC--------CCC
Confidence 4799999999999984 3444332 2211111223467778888777666666665543 32211 111
Q ss_pred hHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCC
Q 039378 294 KQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGF 345 (600)
Q Consensus 294 ~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~ 345 (600)
...... .....++. --.+++|||||+|.++....
T Consensus 129 ~~~~~~-------------~~~~~llr-----~~~vrmLIIDE~H~lLaGs~ 162 (302)
T PF05621_consen 129 RVAKLE-------------QQVLRLLR-----RLGVRMLIIDEFHNLLAGSY 162 (302)
T ss_pred CHHHHH-------------HHHHHHHH-----HcCCcEEEeechHHHhcccH
Confidence 111100 01123332 23578999999999987543
No 270
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.03 E-value=0.11 Score=57.74 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=34.9
Q ss_pred EchHHHHHHHHccCCCccceEEEEEcccchhhcC-CChHHHHHHHHhcCcCCcEEEEeccCChh-HHHHHHHh
Q 039378 310 GTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM-GFEEPVRFILSKISLARQMVMFSATWPIE-VHKLAEEY 380 (600)
Q Consensus 310 ~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~-~~~~~~~~il~~~~~~~q~i~~SATl~~~-~~~~~~~~ 380 (600)
.+|..+...+.. +.+.++|+||=+=+.... .....+..+.....+...++++|||.... +...+..|
T Consensus 249 ~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 249 KDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred CCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 356666555542 345678888877765321 11122222333333444577888886533 33444444
No 271
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.01 E-value=0.21 Score=48.85 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.8
Q ss_pred CcEEEEecCCCCchhHh
Q 039378 216 RDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~ 232 (600)
.++++.||+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47899999999999863
No 272
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.01 E-value=0.11 Score=59.03 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=53.5
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 199 KNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
..++|-|.+++... ...++|.|..|||||.+ ++.-+.+++.... ...-++|+++-|+..|..+.+++..+.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~-l~~ria~Li~~~~------i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRV-LTHRIAHLIAEKN------VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHH-HHHHHHHHHHcCC------CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 35789999999753 46799999999999997 4444555554321 112348999999999999999998875
Q ss_pred C
Q 039378 279 K 279 (600)
Q Consensus 279 ~ 279 (600)
.
T Consensus 74 ~ 74 (726)
T TIGR01073 74 G 74 (726)
T ss_pred c
Confidence 4
No 273
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.00 E-value=0.16 Score=53.16 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=31.5
Q ss_pred eEEEEEcccchhhcC-CChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhc
Q 039378 329 VSFVVLDEADRMLDM-GFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYM 381 (600)
Q Consensus 329 ~~~lViDEah~l~~~-~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~ 381 (600)
.++||||.+-++... .....+..+.....+..-++.++||........+..|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHH
Confidence 378999999554321 12233445555555556678888887765555555543
No 274
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.97 E-value=0.13 Score=57.64 Aligned_cols=75 Identities=17% Similarity=0.306 Sum_probs=64.7
Q ss_pred CCeEEEEEeehhcHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-ccccCCCCCCcCEEEE
Q 039378 429 RNRVLVFALYQLEADRLENMLRR----SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAARGLDIPDVEVVIN 503 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~~Gldi~~v~~VI~ 503 (600)
+.+++|.+++..-+.+.+..|+. .++.+..+||+++..+|..++....+|...|+|+|. .+...+.+.++.+||.
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 56899999999999887776654 478999999999999999999999999999999995 4556678889998884
No 275
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.93 E-value=0.066 Score=64.04 Aligned_cols=123 Identities=18% Similarity=0.114 Sum_probs=74.1
Q ss_pred CcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCC
Q 039378 201 PSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKP 280 (600)
Q Consensus 201 ~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~ 280 (600)
+|+-|.++|. ..+++++|.|..|||||.+.+--++..+.... ...++|+|+=|+..|..+.+++.+....
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~--------~~~~il~~tFt~~aa~e~~~ri~~~l~~ 71 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGV--------DIDRLLVVTFTNAAAREMKERIEEALQK 71 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC--------CHhhEEEEeccHHHHHHHHHHHHHHHHH
Confidence 5888999998 36789999999999999974443444343221 1134799999999999999888875421
Q ss_pred CCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCcc--ceEEEEEcccch
Q 039378 281 CGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLS--EVSFVVLDEADR 339 (600)
Q Consensus 281 ~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~--~~~~lViDEah~ 339 (600)
. +. .........+.+..-...-|+|...+...+-+.....- +-.+=|.||...
T Consensus 72 ~-~~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 72 A-LQ-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred H-Hh-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 00 00000101111222246679999988765433322111 124456888875
No 276
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.91 E-value=0.065 Score=52.99 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=15.2
Q ss_pred cCCcEEEEecCCCCchhHh
Q 039378 214 NGRDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~ 232 (600)
.++.++++||||+|||...
T Consensus 193 ~~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456888999999999863
No 277
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.89 E-value=0.088 Score=54.66 Aligned_cols=30 Identities=20% Similarity=0.128 Sum_probs=24.0
Q ss_pred HHHHHHhhhhhcCCcEEEEecCCCCchhHh
Q 039378 203 PIQSHAWPFLLNGRDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 203 ~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~ 232 (600)
......+..+..++++++.+|+|+|||..+
T Consensus 182 ~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 182 TTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 344556677778899999999999999864
No 278
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.83 E-value=0.33 Score=54.25 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=13.7
Q ss_pred cceEEEEEcccchhhcC
Q 039378 327 SEVSFVVLDEADRMLDM 343 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~ 343 (600)
..+.+|||||+|.|...
T Consensus 868 r~v~IIILDEID~L~kK 884 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK 884 (1164)
T ss_pred ccceEEEeehHhhhCcc
Confidence 34679999999998753
No 279
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.79 E-value=0.17 Score=51.08 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=24.2
Q ss_pred ceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEe
Q 039378 328 EVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFS 366 (600)
Q Consensus 328 ~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~S 366 (600)
..++|||||+|.+........+..++...+...++|+.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467999999998833223344555666655555555433
No 280
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.75 E-value=0.17 Score=63.07 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=44.4
Q ss_pred CCCCcHHHHHHhhhhhcCC--cEEEEecCCCCchhHhh--HHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHH
Q 039378 198 FKNPSPIQSHAWPFLLNGR--DFIGIAKTGSGKTIAFG--VPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIY 271 (600)
Q Consensus 198 ~~~~~~~Q~~~i~~il~~~--d~i~~a~TGsGKT~~~~--lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~ 271 (600)
...+++.|+.++..++.+. -+++.|..|+|||.+.. +-.+..++.. .+..++.++||-..+.++.
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~---------~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES---------EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh---------cCCeEEEEeChHHHHHHHH
Confidence 3478999999999998764 36778999999998631 1222222221 1344788999977766654
No 281
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.69 E-value=0.3 Score=54.66 Aligned_cols=91 Identities=16% Similarity=0.190 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHh-CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecccccc
Q 039378 413 RDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRR-SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAAR 491 (600)
Q Consensus 413 ~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~-~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~ 491 (600)
|....+..+..... .+.++||.++++..+.++.+.|+. .+..+..+||+++..+|...+.....|..+|+|+|..+..
T Consensus 175 KT~v~l~~i~~~l~-~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~ 253 (679)
T PRK05580 175 KTEVYLQAIAEVLA-QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF 253 (679)
T ss_pred HHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc
Confidence 44444333333322 257899999999999999999976 4788999999999999999999999999999999964322
Q ss_pred CCCCCCcCEEEEcC
Q 039378 492 GLDIPDVEVVINYS 505 (600)
Q Consensus 492 Gldi~~v~~VI~~d 505 (600)
+.+.++..||.-+
T Consensus 254 -~p~~~l~liVvDE 266 (679)
T PRK05580 254 -LPFKNLGLIIVDE 266 (679)
T ss_pred -ccccCCCEEEEEC
Confidence 5567888877543
No 282
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.55 E-value=0.29 Score=54.16 Aligned_cols=93 Identities=23% Similarity=0.249 Sum_probs=74.7
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC-C-CeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccc
Q 039378 411 RSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS-G-WKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDV 488 (600)
Q Consensus 411 ~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~-~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~ 488 (600)
..+...++.++...... ++.+||.++.+..+.++...|+.. + ..+..+|+++++.+|.+.+....+|+.+|+|.|..
T Consensus 171 SGKTevyl~~i~~~l~~-Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 171 EDWARRLAAAAAATLRA-GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CcHHHHHHHHHHHHHHc-CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 35666677777665543 678999999999999999999865 3 57999999999999999999999999999999965
Q ss_pred cccCCCCCCcCEEEEcC
Q 039378 489 AARGLDIPDVEVVINYS 505 (600)
Q Consensus 489 ~~~Gldi~~v~~VI~~d 505 (600)
+.- .-+++...||..+
T Consensus 250 AvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 250 AVF-APVEDLGLVAIWD 265 (665)
T ss_pred eEE-eccCCCCEEEEEc
Confidence 433 4556777777544
No 283
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.55 E-value=0.25 Score=42.21 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=13.4
Q ss_pred eEEEEEcccchhhcCC
Q 039378 329 VSFVVLDEADRMLDMG 344 (600)
Q Consensus 329 ~~~lViDEah~l~~~~ 344 (600)
..+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 5899999999987653
No 284
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.54 E-value=0.22 Score=52.90 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.1
Q ss_pred cEEEEecCCCCchhHhhH
Q 039378 217 DFIGIAKTGSGKTIAFGV 234 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~l 234 (600)
..|++||.|+|||.++.+
T Consensus 37 a~Lf~Gp~G~GKTT~Ari 54 (491)
T PRK14964 37 SILLVGASGVGKTTCARI 54 (491)
T ss_pred eEEEECCCCccHHHHHHH
Confidence 589999999999986443
No 285
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.50 E-value=0.33 Score=48.07 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=16.0
Q ss_pred cCCcEEEEecCCCCchhHh
Q 039378 214 NGRDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~ 232 (600)
.+.++++.||+|+|||.++
T Consensus 57 ~~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CCceEEEEcCCCCCHHHHH
Confidence 4558999999999999864
No 286
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.48 E-value=0.047 Score=52.73 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=35.0
Q ss_pred hccccccccCCCCHHHHHhhcCCCCCcHHHHHHhhhhhcCCc-EEEEecCCCCchhHhhHHHHHHHHhccc
Q 039378 176 YKALKSFTESKLPDDVLGCCKNFKNPSPIQSHAWPFLLNGRD-FIGIAKTGSGKTIAFGVPAMMHVLSNRK 245 (600)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~Q~~~i~~il~~~d-~i~~a~TGsGKT~~~~lp~l~~~~~~~~ 245 (600)
+..+.+|+++++|+-+.+.+. ..+. ++|.+|||||||.. +..++.++.++..
T Consensus 102 p~~i~~~e~LglP~i~~~~~~-----------------~~~GLILVTGpTGSGKSTT-lAamId~iN~~~~ 154 (353)
T COG2805 102 PSKIPTLEELGLPPIVRELAE-----------------SPRGLILVTGPTGSGKSTT-LAAMIDYINKHKA 154 (353)
T ss_pred CccCCCHHHcCCCHHHHHHHh-----------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhccCC
Confidence 466777888888876654321 1222 77889999999987 5556777665543
No 287
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.46 E-value=0.046 Score=59.37 Aligned_cols=154 Identities=15% Similarity=0.137 Sum_probs=84.3
Q ss_pred CCcHHHHHHhhhhhcC--CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHH-HHHHH
Q 039378 200 NPSPIQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIY-DVLND 276 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~--~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~-~~~~~ 276 (600)
..+|+|.+.+..+-.. +.|+++.++-+|||.+ ++-++.+.+...+ ..+|++.||..+|..+. ..|..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~-~~n~~g~~i~~~P---------~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTEL-LLNWIGYSIDQDP---------GPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHH-HHhhceEEEEeCC---------CCEEEEEEcHHHHHHHHHHHHHH
Confidence 6789999999988765 4788999999999995 3333333333322 22699999999998877 45665
Q ss_pred hcCCCCceEEEEeC----CCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcC--CChHHHH
Q 039378 277 AGKPCGVKSVCVYG----GTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM--GFEEPVR 350 (600)
Q Consensus 277 ~~~~~~~~~~~~~~----g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~--~~~~~~~ 350 (600)
+......-...+.. ..........+. +..|.++.-..- ..+.-..+++|++||.|.+... +-++.+.
T Consensus 86 mi~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~ 158 (557)
T PF05876_consen 86 MIRASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVE 158 (557)
T ss_pred HHHhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhccccCccCCCHHH
Confidence 54433211111111 011111111112 344444432211 1223456889999999998531 2234444
Q ss_pred HHHHhcCc--CCcEEEEeccCC
Q 039378 351 FILSKISL--ARQMVMFSATWP 370 (600)
Q Consensus 351 ~il~~~~~--~~q~i~~SATl~ 370 (600)
.+..+... ....+++..|++
T Consensus 159 la~~R~~tf~~~~K~~~~STPt 180 (557)
T PF05876_consen 159 LAEKRTKTFGSNRKILRISTPT 180 (557)
T ss_pred HHHHHHhhhccCcEEEEeCCCC
Confidence 44443322 234555555544
No 288
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.40 E-value=1.5 Score=45.32 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=29.1
Q ss_pred cceEEEEEcccchhhc-CCChHHHHHHHHhcC---cCCcEEEEeccCCh-hHHHHHHHh
Q 039378 327 SEVSFVVLDEADRMLD-MGFEEPVRFILSKIS---LARQMVMFSATWPI-EVHKLAEEY 380 (600)
Q Consensus 327 ~~~~~lViDEah~l~~-~~~~~~~~~il~~~~---~~~q~i~~SATl~~-~~~~~~~~~ 380 (600)
..+++||||=+-+... ......+..++.... ....++++|||... .+......|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 4578999997655421 112223333444332 22357889999876 444444444
No 289
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.38 E-value=0.25 Score=49.89 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=14.7
Q ss_pred cEEEEecCCCCchhHhh
Q 039378 217 DFIGIAKTGSGKTIAFG 233 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~ 233 (600)
++|+.||+|+|||..+-
T Consensus 50 SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 50 SMILWGPPGTGKTTLAR 66 (436)
T ss_pred eeEEECCCCCCHHHHHH
Confidence 69999999999998543
No 290
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.38 E-value=0.061 Score=58.10 Aligned_cols=157 Identities=20% Similarity=0.180 Sum_probs=90.5
Q ss_pred CCCCCcHHHHHHhhhhhcCC----------cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGR----------DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTREL 266 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~----------d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~L 266 (600)
....++..|.+++-...+.+ .+++....|.||--...-.|+...++.++ ++|++.-+..|
T Consensus 261 ~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRK----------rAlW~SVSsDL 330 (1300)
T KOG1513|consen 261 DSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRK----------RALWFSVSSDL 330 (1300)
T ss_pred cccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccc----------eeEEEEecccc
Confidence 34467788998887765432 35666566665543222224666666533 47999988888
Q ss_pred HHHHHHHHHHhcCCCCceEEEEe----CCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc-C------------CCccce
Q 039378 267 ADQIYDVLNDAGKPCGVKSVCVY----GGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN-V------------CHLSEV 329 (600)
Q Consensus 267 a~q~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-~------------~~l~~~ 329 (600)
-...-+.+...+. ++|.+..+. +-.+.... ... .-.||++||..|+-..... . +.-..=
T Consensus 331 KfDAERDL~DigA-~~I~V~alnK~KYakIss~en-~n~--krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~fe 406 (1300)
T KOG1513|consen 331 KFDAERDLRDIGA-TGIAVHALNKFKYAKISSKEN-TNT--KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFE 406 (1300)
T ss_pred ccchhhchhhcCC-CCccceehhhccccccccccc-CCc--cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccc
Confidence 7777777776654 335444331 11110000 011 1379999998886543211 0 001112
Q ss_pred EEEEEcccchhhcCC---------ChHHHHHHHHhcCcCCcEEEEecc
Q 039378 330 SFVVLDEADRMLDMG---------FEEPVRFILSKISLARQMVMFSAT 368 (600)
Q Consensus 330 ~~lViDEah~l~~~~---------~~~~~~~il~~~~~~~q~i~~SAT 368 (600)
.+|||||||+..+.. .+..+..+-+.+|. .+++.-|||
T Consensus 407 GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~-ARVVYASAT 453 (1300)
T KOG1513|consen 407 GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPN-ARVVYASAT 453 (1300)
T ss_pred eeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCC-ceEEEeecc
Confidence 689999999977621 34445555556654 458999999
No 291
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.38 E-value=0.076 Score=49.22 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=27.4
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEecc
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSAT 368 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 368 (600)
..+.+.||+||||.|... -...++..+.......++.+..-+
T Consensus 111 ~grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 367899999999998763 445566666666555544443333
No 292
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.37 E-value=0.091 Score=52.62 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=37.1
Q ss_pred CCcHHHHHHhhhhh-cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHH
Q 039378 200 NPSPIQSHAWPFLL-NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTREL 266 (600)
Q Consensus 200 ~~~~~Q~~~i~~il-~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~L 266 (600)
.+++.|...|..+. .+.+++++|+||||||.. +-.++..+...+. .-+++++-.+.||
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~~--------~~rivtiEd~~El 186 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASAP--------EDRLVILEDTAEI 186 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCCC--------CceEEEecCCccc
Confidence 35677877776655 456899999999999984 2333333322211 2246777777777
No 293
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.37 E-value=0.17 Score=53.38 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=15.1
Q ss_pred CCcEEEEecCCCCchhHhh
Q 039378 215 GRDFIGIAKTGSGKTIAFG 233 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~ 233 (600)
+.-+.+.||||+|||++..
T Consensus 256 g~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTA 274 (484)
T ss_pred CcEEEEECCCCccHHHHHH
Confidence 4457788999999999643
No 294
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.34 E-value=0.058 Score=61.38 Aligned_cols=103 Identities=20% Similarity=0.222 Sum_probs=77.8
Q ss_pred hcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcC
Q 039378 426 KSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYS 505 (600)
Q Consensus 426 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d 505 (600)
++.-.++|||+.-....+.+...+.-.++....--+ .++-...+..|.+ --.+|+-+...+-|+|+-++.||+..+
T Consensus 1218 k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~e 1293 (1394)
T KOG0298|consen 1218 KNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVE 1293 (1394)
T ss_pred cCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheec
Confidence 344578999999888888888777655554433333 2344555666655 334667788889999999999999999
Q ss_pred CCCChhhHHHHhhhccCCCCccEEEEE
Q 039378 506 FPLTTEDYVHRIGRTGRAGKKGVSHTF 532 (600)
Q Consensus 506 ~p~s~~~y~qr~GR~gR~g~~g~~~~~ 532 (600)
+-.++..-.|.+||++|.||.-...+.
T Consensus 1294 PiLN~~~E~QAigRvhRiGQ~~pT~V~ 1320 (1394)
T KOG0298|consen 1294 PILNPGDEAQAIGRVHRIGQKRPTFVH 1320 (1394)
T ss_pred cccCchHHHhhhhhhhhcccccchhhh
Confidence 999999999999999999987544443
No 295
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.32 E-value=0.47 Score=47.38 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=18.4
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHH
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVL 241 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~ 241 (600)
++++++.|++|+|||.. +..+...+.
T Consensus 156 ~~gl~L~G~~G~GKThL-a~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL-LAAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 45799999999999985 233444444
No 296
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.30 E-value=0.16 Score=55.22 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=23.5
Q ss_pred cceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEecc
Q 039378 327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSAT 368 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 368 (600)
.+++++||||+|+|....+ ..+..++...+... .++|.+|
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v-~FILaTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHV-KFLFATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCc-EEEEEEC
Confidence 4678999999998865433 23334444444333 3444445
No 297
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.29 E-value=0.32 Score=52.36 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecccccc
Q 039378 413 RDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS-GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAAR 491 (600)
Q Consensus 413 ~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~ 491 (600)
|....+.++..... .++++||.++++.-+.++...|+.. +..+..+||+++..+|.+.+.....|...|+|+|..+-.
T Consensus 10 KT~v~l~~i~~~l~-~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf 88 (505)
T TIGR00595 10 KTEVYLQAIEKVLA-LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF 88 (505)
T ss_pred HHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc
Confidence 34444444443332 3668999999999999999988764 778999999999999999999999999999999964332
Q ss_pred CCCCCCcCEEEE
Q 039378 492 GLDIPDVEVVIN 503 (600)
Q Consensus 492 Gldi~~v~~VI~ 503 (600)
+.+.++..||.
T Consensus 89 -~p~~~l~lIIV 99 (505)
T TIGR00595 89 -LPFKNLGLIIV 99 (505)
T ss_pred -CcccCCCEEEE
Confidence 45667888774
No 298
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.27 E-value=0.13 Score=50.98 Aligned_cols=79 Identities=18% Similarity=0.078 Sum_probs=53.7
Q ss_pred hccccccccCCCCHHHHHhhcCCCCCcHHHHHHhhhhhcCC-cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCC
Q 039378 176 YKALKSFTESKLPDDVLGCCKNFKNPSPIQSHAWPFLLNGR-DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN 254 (600)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~Q~~~i~~il~~~-d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~ 254 (600)
.-++..|....+.-. .+..|..+++-|...+-.+..++ ++++++.||||||.. ++.+...-. ..
T Consensus 136 ~lsIRKf~k~~ltl~---dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-----LNal~~~i~-------~~ 200 (355)
T COG4962 136 TLSIRKFPKIKLTLL---DLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-----LNALSGFID-------SD 200 (355)
T ss_pred cccccccccccccHH---HHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-----HHHHHhcCC-------Cc
Confidence 345556655554432 33378889999999998888877 999999999999983 333333211 12
Q ss_pred ceEEEEcccHHHHHH
Q 039378 255 PLCLVLSPTRELADQ 269 (600)
Q Consensus 255 ~~~liv~Ptr~La~q 269 (600)
-+++.+--|.||..+
T Consensus 201 eRvItiEDtaELql~ 215 (355)
T COG4962 201 ERVITIEDTAELQLA 215 (355)
T ss_pred ccEEEEeehhhhccC
Confidence 257888888888433
No 299
>PLN03025 replication factor C subunit; Provisional
Probab=94.27 E-value=0.22 Score=50.35 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=24.2
Q ss_pred cceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccC
Q 039378 327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATW 369 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl 369 (600)
..++++||||+|.|.... ...+..++...+.... ++++++.
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~-~il~~n~ 138 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTR-FALACNT 138 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCce-EEEEeCC
Confidence 358899999999986532 2334444554444343 4444443
No 300
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.25 E-value=0.18 Score=57.20 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=26.0
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCC
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWP 370 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~ 370 (600)
..+++++||||+|+|....+ ..|..++...+....+|+.+ |-+
T Consensus 118 ~~~~KV~IIDEad~lt~~a~-NaLLK~LEEpP~~~~fIl~t-t~~ 160 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGF-NALLKIVEEPPEHLKFIFAT-TEP 160 (824)
T ss_pred cCCceEEEEechhhcCHHHH-HHHHHHHhCCCCCeEEEEEe-CCh
Confidence 35789999999999976433 33444455444444444443 533
No 301
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.24 E-value=0.38 Score=48.94 Aligned_cols=19 Identities=42% Similarity=0.466 Sum_probs=15.2
Q ss_pred cCCcEEEEecCCCCchhHh
Q 039378 214 NGRDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~ 232 (600)
.++-+++++|+|+|||...
T Consensus 205 ~~~ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTL 223 (407)
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456788999999999863
No 302
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.12 E-value=0.16 Score=45.63 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=26.9
Q ss_pred cceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccC
Q 039378 327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATW 369 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl 369 (600)
..++++|||+||.|... -...+...+...+....++++|..+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 56899999999998654 2344555566666666555555543
No 303
>PF13173 AAA_14: AAA domain
Probab=94.05 E-value=0.66 Score=39.71 Aligned_cols=39 Identities=13% Similarity=0.389 Sum_probs=25.2
Q ss_pred ceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCC
Q 039378 328 EVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWP 370 (600)
Q Consensus 328 ~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~ 370 (600)
.-.+|+|||+|.+.+ +...+..+.... .+. .+++|+...
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~-~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNI-KIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCc-eEEEEccch
Confidence 456899999999865 556677776644 233 444444433
No 304
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.00 E-value=0.09 Score=49.12 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=13.7
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
++|++||+|.|||..
T Consensus 52 h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTL 66 (233)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred eEEEECCCccchhHH
Confidence 699999999999984
No 305
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.98 E-value=0.18 Score=55.48 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=80.4
Q ss_pred CcHHHHHHhhhhhcCC--cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 201 PSPIQSHAWPFLLNGR--DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 201 ~~~~Q~~~i~~il~~~--d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
+..-|.+.+..++..+ -+++.|.=|=|||.+..|.+ ..+..... ..+++|.+|+.+-++.+++.+.+-.
T Consensus 215 dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~-~~~~~~~~--------~~~iiVTAP~~~nv~~Lf~fa~~~l 285 (758)
T COG1444 215 DQAEALEILERLLDAPKRALVLTADRGRGKSAALGIAL-AAAARLAG--------SVRIIVTAPTPANVQTLFEFAGKGL 285 (758)
T ss_pred hHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHH-HHHHHhcC--------CceEEEeCCCHHHHHHHHHHHHHhH
Confidence 3334444556666554 47788999999999877655 22222211 2348999999999888887766654
Q ss_pred CCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCc
Q 039378 279 KPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL 358 (600)
Q Consensus 279 ~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~ 358 (600)
...|.+............ ..-.....|=+.+|.... ..-++||||||=.+ ..+.+..++...
T Consensus 286 ~~lg~~~~v~~d~~g~~~--~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~~l~~~~-- 347 (758)
T COG1444 286 EFLGYKRKVAPDALGEIR--EVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLHKLLRRF-- 347 (758)
T ss_pred HHhCCcccccccccccee--eecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHHHHHhhc--
Confidence 444432211111100000 000011234455554331 11579999999876 445566665543
Q ss_pred CCcEEEEeccCC
Q 039378 359 ARQMVMFSATWP 370 (600)
Q Consensus 359 ~~q~i~~SATl~ 370 (600)
+.++||.|+.
T Consensus 348 --~rv~~sTTIh 357 (758)
T COG1444 348 --PRVLFSTTIH 357 (758)
T ss_pred --CceEEEeeec
Confidence 4788999864
No 306
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.98 E-value=0.11 Score=57.10 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=23.5
Q ss_pred cceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEecc
Q 039378 327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSAT 368 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 368 (600)
.+++++||||+|.|....+.. +..++...+... +++|.+|
T Consensus 118 gr~KVIIIDEah~LT~~A~NA-LLKtLEEPP~~v-~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNA-MLKTLEEPPPHV-KFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHHHHH-HHHHHHhcCCCe-EEEEEEC
Confidence 468999999999986643322 333444433333 4444444
No 307
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.95 E-value=0.46 Score=48.75 Aligned_cols=137 Identities=17% Similarity=0.181 Sum_probs=60.2
Q ss_pred cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeC-CCChH
Q 039378 217 DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYG-GTSKQ 295 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~-g~~~~ 295 (600)
-.++.||.|.||+..+ ..+...++.............+..+.+|+.-.-|.++ .. +...++..+.-.. +....
T Consensus 43 A~Lf~Gp~G~GK~~lA-~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i----~~-~~HPDl~~i~~~~~~~~~~ 116 (365)
T PRK07471 43 AWLIGGPQGIGKATLA-YRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI----AA-GAHGGLLTLERSWNEKGKR 116 (365)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH----Hc-cCCCCeEEEeccccccccc
Confidence 4889999999999863 3334555543211100000112244555553333332 21 2222333322110 10000
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEecc
Q 039378 296 PQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSAT 368 (600)
Q Consensus 296 ~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 368 (600)
....|.|-..-.+...+... ......+++||||+|.|... -...+...+...+....+|++|..
T Consensus 117 -------~~~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 117 -------LRTVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred -------ccccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECC
Confidence 00233332222233332222 22456889999999988543 223334444444444444444443
No 308
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.89 E-value=0.19 Score=56.52 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=23.6
Q ss_pred cceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCCh
Q 039378 327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPI 371 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~ 371 (600)
.+++++||||||+|....+ ..+..++...+....+|+ ..|-+.
T Consensus 118 gk~KViIIDEAh~LT~eAq-NALLKtLEEPP~~vrFIL-aTTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSF-NALLKTLEEPPEHVKFLL-ATTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhccCCCeEEEE-ECCCch
Confidence 4688999999999854322 233334443333333444 344333
No 309
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.88 E-value=0.25 Score=54.94 Aligned_cols=75 Identities=23% Similarity=0.305 Sum_probs=64.2
Q ss_pred CCeEEEEEeehhcHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-ccccCCCCCCcCEEEE
Q 039378 429 RNRVLVFALYQLEADRLENMLRR----SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAARGLDIPDVEVVIN 503 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~~Gldi~~v~~VI~ 503 (600)
+.+++|.+++..-+.++++.+.. .++.+..+||+++..+|...+....+|...|+|+|. .+...+.+.++.+||.
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 56899999999999888776654 478999999999999999999999999999999995 4456678888888873
No 310
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.84 E-value=0.29 Score=54.97 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=53.5
Q ss_pred hcCCCeEEEEEeehhcHHHHHHHHHhCC-----CeEEE-EcCCCCHHHHHHHHHHHhcCCCCEEEecccc
Q 039378 426 KSQRNRVLVFALYQLEADRLENMLRRSG-----WKVVA-IHGKKAQHERTKSLSLFKEGTCPLMVATDVA 489 (600)
Q Consensus 426 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~-----~~~~~-l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~ 489 (600)
...+.++++.++|..-+.+.++.|.... ..+.. +||.|+..+++.++++|.+|+++|||+|..+
T Consensus 122 a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 122 AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 3346899999999999988888887542 44433 9999999999999999999999999999654
No 311
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.78 E-value=0.26 Score=49.85 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=24.4
Q ss_pred CcHHHHHHhhhhhcC-----CcEEEEecCCCCchhHh
Q 039378 201 PSPIQSHAWPFLLNG-----RDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 201 ~~~~Q~~~i~~il~~-----~d~i~~a~TGsGKT~~~ 232 (600)
++|||...+..+... +-.++.||.|.||+..+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA 38 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA 38 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH
Confidence 368888888776643 24789999999999864
No 312
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.67 E-value=0.27 Score=49.43 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=23.4
Q ss_pred CcHHHHHHhhhhh----cCC---cEEEEecCCCCchhHh
Q 039378 201 PSPIQSHAWPFLL----NGR---DFIGIAKTGSGKTIAF 232 (600)
Q Consensus 201 ~~~~Q~~~i~~il----~~~---d~i~~a~TGsGKT~~~ 232 (600)
.+|||...+..+. +|+ -.++.||.|.||+..+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA 41 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLI 41 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHH
Confidence 3677777776655 333 4779999999999863
No 313
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.66 E-value=0.17 Score=52.07 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=14.3
Q ss_pred ccceEEEEEcccchhhcC
Q 039378 326 LSEVSFVVLDEADRMLDM 343 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~ 343 (600)
....+++||||+|.|...
T Consensus 117 ~~~~kviIIDEa~~l~~~ 134 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRH 134 (363)
T ss_pred cCCceEEEEEChhhcCHH
Confidence 346789999999998653
No 314
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.62 E-value=0.87 Score=49.62 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=77.2
Q ss_pred CcHHHHHHhhhhh---cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 201 PSPIQSHAWPFLL---NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 201 ~~~~Q~~~i~~il---~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
|.|.=.+-|..++ ..+-.++.+|=|.|||.+..+.+. .+.... +.+++|++|...-+.++++.+...
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f~---------Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISFL---------EIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHhc---------CCeEEEECCChhhHHHHHHHHHHH
Confidence 4455555555444 345567789999999987544333 333211 334899999999888888877765
Q ss_pred cCCCC--------ceEEEEeCCCChHHH-H-HHHhcC-CcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCCh
Q 039378 278 GKPCG--------VKSVCVYGGTSKQPQ-I-TALRSG-VDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFE 346 (600)
Q Consensus 278 ~~~~~--------~~~~~~~~g~~~~~~-~-~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~ 346 (600)
....+ ..+..+.||...-.. . ...+.| ..|.+++-. .+...-..+++||+|||..+..
T Consensus 240 le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~---- 308 (752)
T PHA03333 240 VHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP---- 308 (752)
T ss_pred HHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH----
Confidence 54221 111222222110000 0 000000 122232211 1122223578999999998854
Q ss_pred HHHHHHHHhcC-cCCcEEEEeccC
Q 039378 347 EPVRFILSKIS-LARQMVMFSATW 369 (600)
Q Consensus 347 ~~~~~il~~~~-~~~q~i~~SATl 369 (600)
..+..++-.+. ....++++|.+-
T Consensus 309 ~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 309 GALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHHHHccCCCceEEEeCCC
Confidence 34444544443 345566666664
No 315
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.61 E-value=0.14 Score=51.36 Aligned_cols=58 Identities=21% Similarity=0.204 Sum_probs=37.3
Q ss_pred CCcHHHHHHhhhhh-cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHH
Q 039378 200 NPSPIQSHAWPFLL-NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTREL 266 (600)
Q Consensus 200 ~~~~~Q~~~i~~il-~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~L 266 (600)
.+++.|...+..+. .+.+++++|+||||||.. +-.++..+...+. ..+++++-.+.||
T Consensus 132 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~--------~~rivtIEd~~El 190 (319)
T PRK13894 132 IMTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQDP--------TERVFIIEDTGEI 190 (319)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcCC--------CceEEEEcCCCcc
Confidence 35677888776544 556899999999999974 3333333322111 2346777777776
No 316
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.58 E-value=0.32 Score=49.18 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=24.7
Q ss_pred cceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCC
Q 039378 327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWP 370 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~ 370 (600)
..+++|||||||.|... -...+...+...+... .+++.+.-+
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~-~~il~~n~~ 149 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNT-RFILITNDP 149 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCe-EEEEEcCCh
Confidence 67899999999998653 2233333444334434 445555433
No 317
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.57 E-value=0.19 Score=50.08 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=35.3
Q ss_pred CcHHHHHHhhhhh-cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHH
Q 039378 201 PSPIQSHAWPFLL-NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTREL 266 (600)
Q Consensus 201 ~~~~Q~~~i~~il-~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~L 266 (600)
+++-|...+..++ .+.+++++|+||||||.. +-.++..+..... ..+++++-.+.|+
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~~--------~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKNDP--------TDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccCC--------CceEEEECCchhh
Confidence 4555666665544 456899999999999985 2223333322111 2246777788777
No 318
>PRK04195 replication factor C large subunit; Provisional
Probab=93.52 E-value=0.32 Score=52.28 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.8
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
.+.+++.||+|+|||..
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 35799999999999985
No 319
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.46 E-value=0.16 Score=46.32 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=30.1
Q ss_pred HHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHH
Q 039378 207 HAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQI 270 (600)
Q Consensus 207 ~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~ 270 (600)
....++-++.++++.|++|+|||..+ ..+...+.... ..+++ ++..+|...+
T Consensus 39 ~~~~~~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~~g----------~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 39 AALEFIENGENLILYGPPGTGKTHLA-VAIANEAIRKG----------YSVLF-ITASDLLDEL 90 (178)
T ss_dssp HHH-S-SC--EEEEEESTTSSHHHHH-HHHHHHHHHTT------------EEE-EEHHHHHHHH
T ss_pred hcCCCcccCeEEEEEhhHhHHHHHHH-HHHHHHhccCC----------cceeE-eecCceeccc
Confidence 34455667789999999999999863 33455555432 12444 4555775554
No 320
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.42 E-value=0.17 Score=54.38 Aligned_cols=39 Identities=10% Similarity=0.190 Sum_probs=23.6
Q ss_pred cceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEe
Q 039378 327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFS 366 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~S 366 (600)
.+++++||||+|.|....+. .+...+...+....+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~n-aLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFN-ALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHHH-HHHHHHhccCCCeEEEEEE
Confidence 46899999999998654332 2334445444444444433
No 321
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.42 E-value=0.38 Score=55.39 Aligned_cols=75 Identities=13% Similarity=0.213 Sum_probs=65.0
Q ss_pred CCeEEEEEeehhcHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-ccccCCCCCCcCEEEE
Q 039378 429 RNRVLVFALYQLEADRLENMLRR----SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAARGLDIPDVEVVIN 503 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~~Gldi~~v~~VI~ 503 (600)
+.+++|.+++..-|.+.+..|.. .++.+..++|..+..++..+++.+..|...|+|+|. .+...+.+.++.+||.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 57899999999999998887765 367889999999999999999999999999999995 5556788889998874
No 322
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.41 E-value=0.24 Score=52.61 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.7
Q ss_pred EEEEecCCCCchhHhh
Q 039378 218 FIGIAKTGSGKTIAFG 233 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~ 233 (600)
+|++||+|+|||..+.
T Consensus 39 ~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 39 YIFAGPRGTGKTTVAR 54 (472)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998643
No 323
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.36 E-value=0.3 Score=48.47 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=13.7
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+|+++|.|+|||..
T Consensus 164 SmIlWGppG~GKTtl 178 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTL 178 (554)
T ss_pred ceEEecCCCCchHHH
Confidence 699999999999984
No 324
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.53 Score=48.28 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=19.8
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhc
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~ 356 (600)
....-+||+||+|.|..... ..+-.++...
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~ 150 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-EVLYSLLRAP 150 (366)
T ss_pred cCCeEEEEEcchhhhccccc-hHHHHHHhhc
Confidence 34456899999999987643 4444444443
No 325
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.21 E-value=0.42 Score=45.55 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=32.0
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHh-cccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLS-NRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~-~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
|.-+++.|++|+|||+..+--+...+.+ ... |++++- .+-..++.+.+..++
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~-----------vlyvs~-ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEK-----------VLYVSF-EEPPEELIENMKSFG 71 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT-------------EEEEES-SS-HHHHHHHHHTTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCc-----------EEEEEe-cCCHHHHHHHHHHcC
Confidence 4568999999999998533333344433 222 677764 355577777777654
No 326
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.16 E-value=1 Score=44.14 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCcHHHHHHhhhhh----cCC-cEEEEecCCCCchhH
Q 039378 200 NPSPIQSHAWPFLL----NGR-DFIGIAKTGSGKTIA 231 (600)
Q Consensus 200 ~~~~~Q~~~i~~il----~~~-d~i~~a~TGsGKT~~ 231 (600)
.+++.+.+++..+. .+. .+++.||+|+|||..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 45566666666543 233 478899999999985
No 327
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.12 E-value=0.32 Score=53.87 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=76.1
Q ss_pred EecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEe
Q 039378 407 VLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS-GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVA 485 (600)
Q Consensus 407 ~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLva 485 (600)
......+.+.++.++..... .+..+||.++.+....++...|+.+ |.++..+|+++++.+|...+.+..+|+.+|+|.
T Consensus 224 GvTGSGKTEvYl~~i~~~L~-~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIG 302 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLA-QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIG 302 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHH-cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEE
Confidence 34445667777777777654 3679999999999999998888765 889999999999999999999999999999999
Q ss_pred ccccccCCCCCCcCEEEE
Q 039378 486 TDVAARGLDIPDVEVVIN 503 (600)
Q Consensus 486 T~~~~~Gldi~~v~~VI~ 503 (600)
|..+-- .-+++...||.
T Consensus 303 tRSAlF-~Pf~~LGLIIv 319 (730)
T COG1198 303 TRSALF-LPFKNLGLIIV 319 (730)
T ss_pred echhhc-CchhhccEEEE
Confidence 964321 34556677663
No 328
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=93.09 E-value=0.25 Score=47.33 Aligned_cols=92 Identities=12% Similarity=0.163 Sum_probs=66.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCC----CCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhc-cCCCCcc
Q 039378 453 GWKVVAIHGKKAQHERTKSLSLFKEGT----CPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT-GRAGKKG 527 (600)
Q Consensus 453 ~~~~~~l~~~~~~~~r~~~~~~F~~g~----~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~-gR~g~~g 527 (600)
++.+..++++.+... -.|..+. ..|+|.-+.++||+.+++..+..+..-+.+..++.||.-=- -|.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 467777776554332 2344433 67899999999999999999999999999888888865323 3677778
Q ss_pred EEEEEEcCCcHhHHHHHHHHHH
Q 039378 528 VSHTFFTNHNKALAGELVNVLR 549 (600)
Q Consensus 528 ~~~~~~~~~d~~~~~~i~~~l~ 549 (600)
.|-+|.++.-...+..|.....
T Consensus 185 l~Ri~~~~~l~~~f~~i~~~~e 206 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAEAEE 206 (239)
T ss_pred ceEEecCHHHHHHHHHHHHHHH
Confidence 8888888776666666655543
No 329
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.09 E-value=0.24 Score=54.37 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=23.1
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEe
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFS 366 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~S 366 (600)
...+++|||||+|.|....+ ..+...+...+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 35679999999998754322 23334444444444444443
No 330
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.08 E-value=0.54 Score=47.44 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=24.2
Q ss_pred cHHHHHHhhhhhcC--C---cEEEEecCCCCchhHh
Q 039378 202 SPIQSHAWPFLLNG--R---DFIGIAKTGSGKTIAF 232 (600)
Q Consensus 202 ~~~Q~~~i~~il~~--~---d~i~~a~TGsGKT~~~ 232 (600)
+|||...+..+... + -.++.||.|.|||..+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la 38 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFA 38 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHH
Confidence 68888888777633 2 4889999999999863
No 331
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.07 E-value=0.77 Score=50.50 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=14.6
Q ss_pred cceEEEEEcccchhhcCC
Q 039378 327 SEVSFVVLDEADRMLDMG 344 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~ 344 (600)
..++++||||+|+|....
T Consensus 118 g~~KV~IIDEah~Ls~~a 135 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS 135 (647)
T ss_pred CCCEEEEEechHhCCHHH
Confidence 468999999999986543
No 332
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.98 E-value=0.12 Score=53.90 Aligned_cols=40 Identities=33% Similarity=0.312 Sum_probs=28.8
Q ss_pred cHHHHHHhhhhhcCCc--EEEEecCCCCchhHhhHHHHHHHHh
Q 039378 202 SPIQSHAWPFLLNGRD--FIGIAKTGSGKTIAFGVPAMMHVLS 242 (600)
Q Consensus 202 ~~~Q~~~i~~il~~~d--~i~~a~TGsGKT~~~~lp~l~~~~~ 242 (600)
++.|...+..+++... +++.||||||||.. +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 5778888877776644 67789999999986 4555555443
No 333
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.96 E-value=0.68 Score=42.66 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.3
Q ss_pred ccceEEEEEcccchhhc
Q 039378 326 LSEVSFVVLDEADRMLD 342 (600)
Q Consensus 326 l~~~~~lViDEah~l~~ 342 (600)
....++|||||+|+|..
T Consensus 94 ~~~~kviiide~~~l~~ 110 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE 110 (188)
T ss_pred cCCeEEEEEechhhhCH
Confidence 45789999999999865
No 334
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.96 E-value=0.45 Score=49.68 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=14.5
Q ss_pred ccceEEEEEcccchhhc
Q 039378 326 LSEVSFVVLDEADRMLD 342 (600)
Q Consensus 326 l~~~~~lViDEah~l~~ 342 (600)
....+++||||+|.|..
T Consensus 125 ~~~~kvvIIdea~~l~~ 141 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSI 141 (397)
T ss_pred cCCeEEEEEeChhhCCH
Confidence 56789999999999864
No 335
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.92 E-value=0.21 Score=54.22 Aligned_cols=40 Identities=10% Similarity=0.191 Sum_probs=23.0
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEe
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFS 366 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~S 366 (600)
..+++++||||+|+|....+. .+...+..-+....+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEe
Confidence 346899999999998654332 2223333334444444444
No 336
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.90 E-value=0.47 Score=51.93 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=23.8
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEe
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFS 366 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~S 366 (600)
....+++||||+|.|....+ ..+...+...+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~-naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAF-NALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHHH-HHHHHHHHhCCCCeEEEEEe
Confidence 46789999999999865322 23333344444444444443
No 337
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.89 E-value=1.4 Score=45.84 Aligned_cols=53 Identities=9% Similarity=0.171 Sum_probs=28.4
Q ss_pred ceEEEEEcccchhhcC-CChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHh
Q 039378 328 EVSFVVLDEADRMLDM-GFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEY 380 (600)
Q Consensus 328 ~~~~lViDEah~l~~~-~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~ 380 (600)
.+++||||=+-++... .....+..+.....+..-+++++||........+..|
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 4667777777654321 1223333444444444457778887665555455544
No 338
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=92.87 E-value=0.19 Score=45.70 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=22.5
Q ss_pred EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccH
Q 039378 218 FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTR 264 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr 264 (600)
.++.|||+||||.- ++-.+.++... +.+++++-|..
T Consensus 4 ~~i~GpM~sGKS~e-Li~~~~~~~~~----------~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTE-LIRRIHRYEIA----------GKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHHHT----------T-EEEEEEEST
T ss_pred EEEECCcCChhHHH-HHHHHHHHHhC----------CCeEEEEEecc
Confidence 36779999999986 33333333222 33478888863
No 339
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.84 E-value=0.39 Score=51.52 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=13.3
Q ss_pred EEEEecCCCCchhHh
Q 039378 218 FIGIAKTGSGKTIAF 232 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~ 232 (600)
+++.||.|+|||.++
T Consensus 39 ~Lf~GppGtGKTTlA 53 (504)
T PRK14963 39 YLFSGPRGVGKTTTA 53 (504)
T ss_pred EEEECCCCCCHHHHH
Confidence 499999999999874
No 340
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.80 E-value=0.34 Score=48.54 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=24.6
Q ss_pred CCcHHHHHHhhhhh----cCC---cEEEEecCCCCchhHh
Q 039378 200 NPSPIQSHAWPFLL----NGR---DFIGIAKTGSGKTIAF 232 (600)
Q Consensus 200 ~~~~~Q~~~i~~il----~~~---d~i~~a~TGsGKT~~~ 232 (600)
.++|||...+..+. +++ -.++.||.|.||+..+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA 42 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV 42 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH
Confidence 46788887776655 343 4889999999999753
No 341
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.79 E-value=0.22 Score=52.41 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=13.9
Q ss_pred EEEEecCCCCchhHhh
Q 039378 218 FIGIAKTGSGKTIAFG 233 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~ 233 (600)
+|++||.|+|||.++.
T Consensus 43 ~Lf~GP~GtGKTTlAr 58 (484)
T PRK14956 43 YIFFGPRGVGKTTIAR 58 (484)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6999999999998643
No 342
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.78 E-value=0.39 Score=49.55 Aligned_cols=71 Identities=18% Similarity=0.006 Sum_probs=47.8
Q ss_pred CCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 198 ~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
+..+-..|.++.-..-.|.. .+.+-.|||||...++- ..++...+ ..-+++|.+=|+.|+.++...+.++
T Consensus 160 IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~K-aa~lh~kn--------Pd~~I~~Tfftk~L~s~~r~lv~~F 229 (660)
T COG3972 160 IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHK-AAELHSKN--------PDSRIAFTFFTKILASTMRTLVPEF 229 (660)
T ss_pred HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHH-HHHHhcCC--------CCceEEEEeehHHHHHHHHHHHHHH
Confidence 33445668877766666655 66788999999863332 22222221 2345799999999999998887776
Q ss_pred c
Q 039378 278 G 278 (600)
Q Consensus 278 ~ 278 (600)
+
T Consensus 230 ~ 230 (660)
T COG3972 230 F 230 (660)
T ss_pred H
Confidence 4
No 343
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.74 E-value=0.83 Score=44.92 Aligned_cols=19 Identities=42% Similarity=0.359 Sum_probs=15.9
Q ss_pred hcCCcEEEEecCCCCchhH
Q 039378 213 LNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~ 231 (600)
..|.-+++.|++|+|||..
T Consensus 28 ~~g~~~~i~g~~G~GKT~l 46 (271)
T cd01122 28 RKGELIILTAGTGVGKTTF 46 (271)
T ss_pred cCCcEEEEEcCCCCCHHHH
Confidence 4566788999999999975
No 344
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.72 E-value=0.57 Score=52.49 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=24.1
Q ss_pred ceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChh
Q 039378 328 EVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIE 372 (600)
Q Consensus 328 ~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~ 372 (600)
...+|||||+|++... ....++..+. ..+++++++|-+..
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCCh
Confidence 4568999999987432 2223333332 35677888775543
No 345
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.67 E-value=0.52 Score=48.49 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=32.1
Q ss_pred ceEEEEEcccchhhcC-CChHHHHHHHHhcCcC-CcEEEEeccCChhHH
Q 039378 328 EVSFVVLDEADRMLDM-GFEEPVRFILSKISLA-RQMVMFSATWPIEVH 374 (600)
Q Consensus 328 ~~~~lViDEah~l~~~-~~~~~~~~il~~~~~~-~q~i~~SATl~~~~~ 374 (600)
++++++||.++.+... .....+-.+++.+... .|+++.|...|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 7889999999988764 2344555566665433 477777777776554
No 346
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.62 E-value=0.31 Score=53.80 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=37.7
Q ss_pred eEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCCh
Q 039378 329 VSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPI 371 (600)
Q Consensus 329 ~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~ 371 (600)
.=++|+|..|++.+......+..+++..|.+.+.++.|-+-|+
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 3599999999999987788899999999999999999987653
No 347
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.61 E-value=0.66 Score=45.52 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=31.1
Q ss_pred cceEEEEEcccchhhcC-CChHHHHHHHHhcC------cCCcEEEEeccCChhHHHHHHHhc
Q 039378 327 SEVSFVVLDEADRMLDM-GFEEPVRFILSKIS------LARQMVMFSATWPIEVHKLAEEYM 381 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~-~~~~~~~~il~~~~------~~~q~i~~SATl~~~~~~~~~~~~ 381 (600)
..+++||||=+-++... .....+..+..... ...-++.++||........+..|.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 45788999888765421 12233444444433 344578899987655444444444
No 348
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.49 E-value=0.38 Score=52.35 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=14.8
Q ss_pred cEEEEecCCCCchhHhhH
Q 039378 217 DFIGIAKTGSGKTIAFGV 234 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~l 234 (600)
.+|+.+|.|+|||.++.+
T Consensus 40 a~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARI 57 (624)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478899999999997443
No 349
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.41 E-value=0.4 Score=52.18 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=23.5
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEe
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFS 366 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~S 366 (600)
....+++||||+|.|....+ ..+...+...+....+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe
Confidence 45789999999999875433 22333444444433344433
No 350
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=0.65 Score=48.51 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=23.2
Q ss_pred ccceEEEEEcccchhhcC--------C-ChHHHHHHHHhcC
Q 039378 326 LSEVSFVVLDEADRMLDM--------G-FEEPVRFILSKIS 357 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~--------~-~~~~~~~il~~~~ 357 (600)
-+.+..|||||.|.+..+ | +...+.+++.++.
T Consensus 322 ~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmD 362 (744)
T KOG0741|consen 322 NSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMD 362 (744)
T ss_pred cCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcc
Confidence 467899999999998642 2 4456677777764
No 351
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.38 E-value=1.3 Score=42.41 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=31.0
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
.+.-+++.+++|+|||... +-++...+.. +.++++++.. +-..+..+.+..++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~-~~~~~~~~~~----------g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILS-QRLAYGFLQN----------GYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHhC----------CCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 4567889999999999852 2233333332 2235777743 33455555555443
No 352
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.37 E-value=0.84 Score=47.09 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=14.4
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
.++++.||+|+|||.+
T Consensus 41 ~~i~I~G~~GtGKT~l 56 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV 56 (365)
T ss_pred CcEEEECCCCCCHHHH
Confidence 4799999999999986
No 353
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.33 E-value=0.095 Score=47.77 Aligned_cols=45 Identities=27% Similarity=0.218 Sum_probs=29.4
Q ss_pred HHHhcCCcEEEEchHHHHHHHHccCC--CccceEEEEEcccchhhcC
Q 039378 299 TALRSGVDIVIGTPGRLIDLIEMNVC--HLSEVSFVVLDEADRMLDM 343 (600)
Q Consensus 299 ~~l~~~~~Iiv~Tp~~l~~~l~~~~~--~l~~~~~lViDEah~l~~~ 343 (600)
+.....++|||+++..|++-.....+ ....-.+|||||||.|.+.
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 33444589999999998764332222 1234579999999998763
No 354
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.26 E-value=0.19 Score=53.92 Aligned_cols=50 Identities=28% Similarity=0.436 Sum_probs=38.6
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
.++++.||||||||..+++|.+.. .+. -++|+=|--+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~~~----------s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---YPG----------SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---ccC----------CEEEEECCCcHHHHHHHHHHHCC
Confidence 469999999999999999997643 211 26888899999887777666654
No 355
>PRK10867 signal recognition particle protein; Provisional
Probab=92.25 E-value=0.86 Score=47.72 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.4
Q ss_pred cEEEEecCCCCchhHh
Q 039378 217 DFIGIAKTGSGKTIAF 232 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~ 232 (600)
-+++++++|+|||...
T Consensus 102 vI~~vG~~GsGKTTta 117 (433)
T PRK10867 102 VIMMVGLQGAGKTTTA 117 (433)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4678899999999863
No 356
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.23 E-value=0.69 Score=47.22 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=24.8
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEe
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFS 366 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~S 366 (600)
...++++||||||.|.... ...+..++...+....++++|
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3568999999999986432 233444555544444455554
No 357
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.23 E-value=0.93 Score=45.71 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=23.3
Q ss_pred cceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEe
Q 039378 327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFS 366 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~S 366 (600)
...++|||||+|.+... ....+..++...+....+|+.+
T Consensus 101 ~~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 101 APFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CCceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 34679999999988543 2234445555555545454443
No 358
>PF05729 NACHT: NACHT domain
Probab=92.19 E-value=1.1 Score=40.00 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=17.1
Q ss_pred EEEEecCCCCchhHhhHHHHHHHHhc
Q 039378 218 FIGIAKTGSGKTIAFGVPAMMHVLSN 243 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~lp~l~~~~~~ 243 (600)
+++.|+.|+|||.. +--++..+...
T Consensus 3 l~I~G~~G~GKStl-l~~~~~~~~~~ 27 (166)
T PF05729_consen 3 LWISGEPGSGKSTL-LRKLAQQLAEE 27 (166)
T ss_pred EEEECCCCCChHHH-HHHHHHHHHhc
Confidence 68899999999985 33334444443
No 359
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.16 E-value=0.68 Score=48.67 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=22.4
Q ss_pred ceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccC
Q 039378 328 EVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATW 369 (600)
Q Consensus 328 ~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl 369 (600)
...+|+|||+|++.. .....++..+.. ..++++.+|.
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le~-~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVED-GTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhhc-CcEEEEEeCC
Confidence 457999999998753 223334444433 4566666653
No 360
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.16 E-value=0.45 Score=51.30 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=23.3
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEe
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFS 366 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~S 366 (600)
....+++||||+|+|....+ ..+...+...+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a~-naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSF-NALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHHH-HHHHHHHhcCCCCceEEEEE
Confidence 45678999999999865322 23334444444344444433
No 361
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.14 E-value=0.39 Score=52.67 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=14.4
Q ss_pred ccceEEEEEcccchhhc
Q 039378 326 LSEVSFVVLDEADRMLD 342 (600)
Q Consensus 326 l~~~~~lViDEah~l~~ 342 (600)
....+++||||+|.|..
T Consensus 125 ~~~~KVvIIdEad~Lt~ 141 (620)
T PRK14954 125 KGRYRVYIIDEVHMLST 141 (620)
T ss_pred cCCCEEEEEeChhhcCH
Confidence 56789999999999865
No 362
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.10 E-value=0.39 Score=51.34 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.7
Q ss_pred cEEEEecCCCCchhHhh
Q 039378 217 DFIGIAKTGSGKTIAFG 233 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~ 233 (600)
.+|++||.|+|||.++.
T Consensus 45 a~Lf~Gp~G~GKTT~Ar 61 (507)
T PRK06645 45 GYLLTGIRGVGKTTSAR 61 (507)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999998643
No 363
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=0.5 Score=47.42 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=14.2
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+.++..+|+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 5799999999999984
No 364
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.92 E-value=0.14 Score=53.23 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=36.1
Q ss_pred cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 217 DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
++++.|+||||||.++++|.+... ...++|+=|--++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999988876532 122688889989987766655544
No 365
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.91 E-value=1.1 Score=42.87 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=15.5
Q ss_pred cCCcEEEEecCCCCchhHh
Q 039378 214 NGRDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~ 232 (600)
.|..+++.+++|+|||...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred CCeEEEEECCCCCChHHHH
Confidence 3567889999999999753
No 366
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=91.91 E-value=0.11 Score=61.47 Aligned_cols=94 Identities=23% Similarity=0.352 Sum_probs=76.7
Q ss_pred eEEEEEeehhcHHHHHHHHHhCC-CeEEEEcCCCC-----------HHHHHHHHHHHhcCCCCEEEeccccccCCCCCCc
Q 039378 431 RVLVFALYQLEADRLENMLRRSG-WKVVAIHGKKA-----------QHERTKSLSLFKEGTCPLMVATDVAARGLDIPDV 498 (600)
Q Consensus 431 ~~lVF~~s~~~~~~l~~~L~~~~-~~~~~l~~~~~-----------~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v 498 (600)
..++||.....+..+...+.... ..+..+.|.+. ...+..++..|....+.+|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 45899999999988888887652 23333444332 2236688999999999999999999999999999
Q ss_pred CEEEEcCCCCChhhHHHHhhhccCCC
Q 039378 499 EVVINYSFPLTTEDYVHRIGRTGRAG 524 (600)
Q Consensus 499 ~~VI~~d~p~s~~~y~qr~GR~gR~g 524 (600)
+.|+.++.|.....|+|+.||+-+.+
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997754
No 367
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.88 E-value=0.47 Score=51.33 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=23.3
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEe
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFS 366 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~S 366 (600)
..+++++||||+|.|....+. .+...+...+....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~n-aLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFN-AMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHHH-HHHHHHhCCCCCEEEEEEe
Confidence 456899999999988653322 2333344434444444444
No 368
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.87 E-value=0.27 Score=53.59 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=14.7
Q ss_pred ccceEEEEEcccchhhcC
Q 039378 326 LSEVSFVVLDEADRMLDM 343 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~ 343 (600)
....+++||||+|.|...
T Consensus 117 ~~~~kViIIDE~~~Lt~~ 134 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTG 134 (559)
T ss_pred cCCeEEEEEECcccCCHH
Confidence 457899999999988653
No 369
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.81 E-value=0.89 Score=49.33 Aligned_cols=134 Identities=15% Similarity=0.172 Sum_probs=78.6
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCC--CceEEEEeCC
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPC--GVKSVCVYGG 291 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~--~~~~~~~~~g 291 (600)
..+-.++..|=-.|||.... +++..++.... +.++++++|.+..+..+++++....... +-.+..+.|
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s~~--------Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG- 322 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALATFR--------GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG- 322 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHhCC--------CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-
Confidence 34557778899999999643 66665554422 4458999999999999999888754321 111111222
Q ss_pred CChHHHHHHHhcC--CcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhc-CcCCcEEEEecc
Q 039378 292 TSKQPQITALRSG--VDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI-SLARQMVMFSAT 368 (600)
Q Consensus 292 ~~~~~~~~~l~~~--~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~-~~~~q~i~~SAT 368 (600)
... .-.+..| ..|.++|- -..+...-..++++|||||+.+... .+..++-.+ ..++++|++|.|
T Consensus 323 e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 323 ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred cEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecC
Confidence 111 0011112 25555532 0122233457899999999988653 333333222 237789999988
Q ss_pred CC
Q 039378 369 WP 370 (600)
Q Consensus 369 l~ 370 (600)
-+
T Consensus 390 Ns 391 (738)
T PHA03368 390 NT 391 (738)
T ss_pred CC
Confidence 43
No 370
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.79 E-value=3.7 Score=37.14 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=28.0
Q ss_pred cceEEEEEcccchhhc-CCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhc
Q 039378 327 SEVSFVVLDEADRMLD-MGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYM 381 (600)
Q Consensus 327 ~~~~~lViDEah~l~~-~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~ 381 (600)
...+++|+|....+.. ......+..+........-++.++|............+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHH
Confidence 3567889998886531 112222333333333344466677765555444444443
No 371
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.78 E-value=0.34 Score=52.49 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=14.3
Q ss_pred cEEEEecCCCCchhHhh
Q 039378 217 DFIGIAKTGSGKTIAFG 233 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~ 233 (600)
..|++||.|+|||..+.
T Consensus 40 A~Lf~GP~GvGKTTlA~ 56 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAK 56 (605)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 372
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=91.77 E-value=1.7 Score=38.62 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=38.3
Q ss_pred ccceEEEEEcccchhhcCCC--hHHHHHHHHhcCcCCcEEEEeccCChhHHHHHH
Q 039378 326 LSEVSFVVLDEADRMLDMGF--EEPVRFILSKISLARQMVMFSATWPIEVHKLAE 378 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~--~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~ 378 (600)
...+++||+||+=..+..++ ...+..++..-+...-+|+.+-.+|+.+..++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999998877765 345556666666666777777788877766543
No 373
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.57 E-value=0.21 Score=50.51 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=24.8
Q ss_pred CCcHHHHHHhhhhh----cCC---cEEEEecCCCCchhHh
Q 039378 200 NPSPIQSHAWPFLL----NGR---DFIGIAKTGSGKTIAF 232 (600)
Q Consensus 200 ~~~~~Q~~~i~~il----~~~---d~i~~a~TGsGKT~~~ 232 (600)
.++|||...+..+. +++ -.++.||.|.||+..+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA 41 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHH
Confidence 35688888887765 333 4789999999999863
No 374
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.57 E-value=0.83 Score=50.67 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.3
Q ss_pred ccceEEEEEcccchhhc
Q 039378 326 LSEVSFVVLDEADRMLD 342 (600)
Q Consensus 326 l~~~~~lViDEah~l~~ 342 (600)
....+++||||||.|..
T Consensus 116 ~g~~KV~IIDEa~~LT~ 132 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK 132 (725)
T ss_pred cCCCEEEEEEChhhCCH
Confidence 46789999999998864
No 375
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.52 E-value=0.39 Score=49.24 Aligned_cols=27 Identities=22% Similarity=0.135 Sum_probs=19.0
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHh
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLS 242 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~ 242 (600)
+..++++||||||||.. +-.++.++..
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 44688999999999985 3444455543
No 376
>PHA00729 NTP-binding motif containing protein
Probab=91.49 E-value=2.5 Score=39.92 Aligned_cols=15 Identities=40% Similarity=0.441 Sum_probs=13.8
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
++++.|++|+|||..
T Consensus 19 nIlItG~pGvGKT~L 33 (226)
T PHA00729 19 SAVIFGKQGSGKTTY 33 (226)
T ss_pred EEEEECCCCCCHHHH
Confidence 799999999999975
No 377
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.39 E-value=0.85 Score=50.19 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=14.2
Q ss_pred ccceEEEEEcccchhhc
Q 039378 326 LSEVSFVVLDEADRMLD 342 (600)
Q Consensus 326 l~~~~~lViDEah~l~~ 342 (600)
....++|||||+|.|..
T Consensus 118 ~~~~kVvIIDEa~~L~~ 134 (585)
T PRK14950 118 LARYKVYIIDEVHMLST 134 (585)
T ss_pred cCCeEEEEEeChHhCCH
Confidence 45789999999998865
No 378
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=91.32 E-value=0.21 Score=47.85 Aligned_cols=14 Identities=29% Similarity=0.378 Sum_probs=12.2
Q ss_pred EEEEecCCCCchhH
Q 039378 218 FIGIAKTGSGKTIA 231 (600)
Q Consensus 218 ~i~~a~TGsGKT~~ 231 (600)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47889999999985
No 379
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.30 E-value=0.65 Score=54.87 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=64.0
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-ccccCCCCCCcCEEE
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAARGLDIPDVEVVI 502 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~~Gldi~~v~~VI 502 (600)
.+.+++|.|++..-+.+++..|... ++.+..++|..+..++..++.....|...|||+|. .+...+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 3678999999999999988877653 46788899999999999999999999999999995 555567778888877
Q ss_pred E
Q 039378 503 N 503 (600)
Q Consensus 503 ~ 503 (600)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 3
No 380
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.26 E-value=0.38 Score=53.01 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.4
Q ss_pred CcEEEEecCCCCchhHh
Q 039378 216 RDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~ 232 (600)
+.+|+.||.|+|||..+
T Consensus 39 ~a~Lf~Gp~G~GKttlA 55 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSA 55 (620)
T ss_pred ceEEEECCCCCChHHHH
Confidence 35789999999999863
No 381
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.17 E-value=3.7 Score=43.59 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=67.0
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-----ccccC-CCCCCc
Q 039378 429 RNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-----VAARG-LDIPDV 498 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-----~~~~G-ldi~~v 498 (600)
...+||.++|++-|.++...+... ++...+++|+.+...+..-++ ..+.|+|+|+ .+..| +|+..+
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCCccccce
Confidence 456999999999999998888755 455889999998776665554 3467999995 45555 799999
Q ss_pred CEEEE--------cCCCCChhhHHHHhhhccC
Q 039378 499 EVVIN--------YSFPLTTEDYVHRIGRTGR 522 (600)
Q Consensus 499 ~~VI~--------~d~p~s~~~y~qr~GR~gR 522 (600)
.++|. +++-..+...++.++|..|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 99883 3333455666777777766
No 382
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.06 E-value=0.24 Score=50.26 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=17.5
Q ss_pred hhhcCCcEEEEecCCCCchhH
Q 039378 211 FLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 211 ~il~~~d~i~~a~TGsGKT~~ 231 (600)
++..+.+++++|+||||||..
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl 178 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM 178 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH
Confidence 344667999999999999984
No 383
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.04 E-value=2.1 Score=48.31 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=25.7
Q ss_pred EEEEEcccchhhcCCC----hHHHHHHHHhcCcCCcEEEEeccCChhH
Q 039378 330 SFVVLDEADRMLDMGF----EEPVRFILSKISLARQMVMFSATWPIEV 373 (600)
Q Consensus 330 ~~lViDEah~l~~~~~----~~~~~~il~~~~~~~q~i~~SATl~~~~ 373 (600)
.+|+|||+|.+...+- ...+..++..+-....+.++.||-+.+.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 4999999999976542 1233334443333345666777755543
No 384
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.01 E-value=1.8 Score=41.58 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=18.4
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHH
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVL 241 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~ 241 (600)
.|.-++++|++|+|||.. ++-++.+..
T Consensus 12 ~G~l~lI~G~~G~GKT~~-~~~~~~~~~ 38 (242)
T cd00984 12 PGDLIIIAARPSMGKTAF-ALNIAENIA 38 (242)
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHH
Confidence 455688999999999975 333344433
No 385
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.96 E-value=0.95 Score=48.96 Aligned_cols=87 Identities=28% Similarity=0.406 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHh--hcCCCe-EEEEEeehhcHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEE
Q 039378 413 RDQRLLALLEKYH--KSQRNR-VLVFALYQLEADRLENMLRRS-----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMV 484 (600)
Q Consensus 413 ~~~~l~~~l~~~~--~~~~~~-~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLv 484 (600)
....++-++..+. ...... +||+++|++-|.++++.+... ++.++.++|+++...+...++ .| ..|||
T Consensus 80 T~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivV 155 (513)
T COG0513 80 TAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVV 155 (513)
T ss_pred HHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEE
Confidence 3455566666654 222222 899999999999998887643 467899999998777665544 46 89999
Q ss_pred ecc-----ccccC-CCCCCcCEEEE
Q 039378 485 ATD-----VAARG-LDIPDVEVVIN 503 (600)
Q Consensus 485 aT~-----~~~~G-ldi~~v~~VI~ 503 (600)
+|+ .+.+| +++..+.++|.
T Consensus 156 aTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 156 ATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred ECccHHHHHHHcCCcchhhcCEEEe
Confidence 996 45666 89999999884
No 386
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.94 E-value=0.27 Score=50.27 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.+.-++++||||||||..
T Consensus 133 ~~glilI~GpTGSGKTTt 150 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL 150 (358)
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 456789999999999985
No 387
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=90.80 E-value=1.7 Score=44.48 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=20.6
Q ss_pred HHHHHHhhhhh---cCCcEEEEecCCCCchhH
Q 039378 203 PIQSHAWPFLL---NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 203 ~~Q~~~i~~il---~~~d~i~~a~TGsGKT~~ 231 (600)
++=..+|..+. .|+..++.||.|+|||..
T Consensus 154 ~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 154 DLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred ccceeeeeeecccccCceEEEeCCCCCChhHH
Confidence 33444444433 678899999999999974
No 388
>PRK09087 hypothetical protein; Validated
Probab=90.75 E-value=0.89 Score=43.30 Aligned_cols=40 Identities=15% Similarity=0.279 Sum_probs=24.0
Q ss_pred EEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEecc-CCh
Q 039378 330 SFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSAT-WPI 371 (600)
Q Consensus 330 ~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SAT-l~~ 371 (600)
++|+||++|.+.. ....+..+++.+......++++++ .|+
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWPS 129 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCChH
Confidence 3889999997632 345566666666553344555554 443
No 389
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.74 E-value=0.16 Score=49.52 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=20.6
Q ss_pred hcCCcEEEEecCCCCchhHhhHHHHHHHHhc
Q 039378 213 LNGRDFIGIAKTGSGKTIAFGVPAMMHVLSN 243 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~ 243 (600)
+...|+++.+|||||||+.+.. +..++.-
T Consensus 95 L~KSNILLiGPTGsGKTlLAqT--LAk~LnV 123 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQT--LAKILNV 123 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHH--HHHHhCC
Confidence 3445899999999999995443 4555443
No 390
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.68 E-value=1.6 Score=45.61 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.6
Q ss_pred cEEEEecCCCCchhHh
Q 039378 217 DFIGIAKTGSGKTIAF 232 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~ 232 (600)
-+++++++|+|||...
T Consensus 101 vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 101 VILMVGLQGSGKTTTC 116 (428)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4778899999999863
No 391
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=90.63 E-value=3 Score=38.23 Aligned_cols=53 Identities=26% Similarity=0.253 Sum_probs=36.7
Q ss_pred ccceEEEEEcccchhhcCCCh--HHHHHHHHhcCcCCcEEEEeccCChhHHHHHH
Q 039378 326 LSEVSFVVLDEADRMLDMGFE--EPVRFILSKISLARQMVMFSATWPIEVHKLAE 378 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~--~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~ 378 (600)
-..+++||+||+=..++.++. ..+..++..-+...-+|+..-..|+.+..++.
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 456899999999999888763 34555565555555566666667777666544
No 392
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=90.63 E-value=0.27 Score=44.91 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=27.5
Q ss_pred cceEEEEEcccchhhcCCChHHHHHHHHhcCc-CCcEEEEecc
Q 039378 327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISL-ARQMVMFSAT 368 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~~~~~~~il~~~~~-~~q~i~~SAT 368 (600)
.+.+++++||...-++......+..++..+.. ..++++.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 56689999999988876555555555554433 3556665543
No 393
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.62 E-value=0.47 Score=51.91 Aligned_cols=18 Identities=11% Similarity=0.303 Sum_probs=14.8
Q ss_pred cceEEEEEcccchhhcCC
Q 039378 327 SEVSFVVLDEADRMLDMG 344 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~ 344 (600)
.+++++||||+|+|....
T Consensus 123 g~~KV~IIDEvh~Ls~~a 140 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTA 140 (618)
T ss_pred CCceEEEEEChhhCCHHH
Confidence 468999999999986543
No 394
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=90.61 E-value=0.32 Score=52.20 Aligned_cols=41 Identities=27% Similarity=0.301 Sum_probs=31.5
Q ss_pred CCcHHHHHHhhhhh----cCCcEEEEecCCCCchhHhhHHHHHHH
Q 039378 200 NPSPIQSHAWPFLL----NGRDFIGIAKTGSGKTIAFGVPAMMHV 240 (600)
Q Consensus 200 ~~~~~Q~~~i~~il----~~~d~i~~a~TGsGKT~~~~lp~l~~~ 240 (600)
+|+.||...+..+. .|+-.|+..|||+|||+..+..++..+
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 68899987766544 678889999999999998655555443
No 395
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.58 E-value=0.25 Score=53.96 Aligned_cols=50 Identities=22% Similarity=0.235 Sum_probs=39.0
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
.++++.||||||||..+++|.+..+- .-++|+=|--|+........++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~-------------~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE-------------DSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC-------------CCEEEEeCcHHHHHHHHHHHHHCC
Confidence 46899999999999999999887531 116888899999877776666543
No 396
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.44 E-value=1.9 Score=41.33 Aligned_cols=52 Identities=10% Similarity=0.120 Sum_probs=30.0
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
|.-+++.|++|+|||...+. ++...+.+ +.+++++.-- +-..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~-~~~~~~~~----------g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQ-FVYGALKQ----------GKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHH-HHHHHHhC----------CCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 44588889999999985332 22222222 2235666543 44456666666654
No 397
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.25 E-value=1.7 Score=45.13 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=26.2
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhH
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEV 373 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~ 373 (600)
..+.+++||||+|+|.... ...+...+...+.. -++++.+|-+..+
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~-~~fIL~a~~~~~l 160 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPR-TVWLLCAPSPEDV 160 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCC-CeEEEEECChHHC
Confidence 3567899999999996532 22333344443333 3455555544333
No 398
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=90.20 E-value=0.7 Score=42.84 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=23.9
Q ss_pred ceEEEEEcccchhhcCCCh-----HHHHHHHHhcCcCC-cEEEEeccCChhHHHHHH
Q 039378 328 EVSFVVLDEADRMLDMGFE-----EPVRFILSKISLAR-QMVMFSATWPIEVHKLAE 378 (600)
Q Consensus 328 ~~~~lViDEah~l~~~~~~-----~~~~~il~~~~~~~-q~i~~SATl~~~~~~~~~ 378 (600)
.-.+|||||||.+...... +.+...+...+... -++++|-. +..+...++
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~-~~~id~~ir 134 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQS-PSQIDKFIR 134 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES--GGGB-HHHH
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCC-HHHHhHHHH
Confidence 4579999999998764322 12223334444333 35555554 444554444
No 399
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.13 E-value=0.62 Score=47.00 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=14.5
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+|+++-+|+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6899999999999974
No 400
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.11 E-value=1.4 Score=46.63 Aligned_cols=52 Identities=21% Similarity=0.177 Sum_probs=32.1
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
|.-+++.+++|+|||... +-+...+... +.+++++.- .+-..|+.....+++
T Consensus 80 Gs~~lI~G~pG~GKTtL~-lq~a~~~a~~----------g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLL-LQVAARLAAA----------GGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CEEEEEECCCCCCHHHHH-HHHHHHHHhc----------CCeEEEEEc-cccHHHHHHHHHHcC
Confidence 445788999999999852 2223333221 234677764 455677777766664
No 401
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.11 E-value=2 Score=50.27 Aligned_cols=44 Identities=20% Similarity=0.364 Sum_probs=34.1
Q ss_pred ceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCCh
Q 039378 328 EVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPI 371 (600)
Q Consensus 328 ~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~ 371 (600)
.--+||||++|.+.+......+..++...+....+|+.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 34589999999986554556788888888888888888877554
No 402
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.07 E-value=1.6 Score=44.89 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=49.1
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCCh
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~ 294 (600)
|.-+++.+++|+|||... +-+...+... +.+++++.-- +-..|+.....+++-.. ....++..
T Consensus 82 GslvLI~G~pG~GKStLl-lq~a~~~a~~----------g~~VlYvs~E-Es~~qi~~Ra~rlg~~~--~~l~l~~e--- 144 (372)
T cd01121 82 GSVILIGGDPGIGKSTLL-LQVAARLAKR----------GGKVLYVSGE-ESPEQIKLRADRLGIST--ENLYLLAE--- 144 (372)
T ss_pred CeEEEEEeCCCCCHHHHH-HHHHHHHHhc----------CCeEEEEECC-cCHHHHHHHHHHcCCCc--ccEEEEcc---
Confidence 445788999999999852 2223333222 2236777654 44567766666654211 11111111
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhh
Q 039378 295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRML 341 (600)
Q Consensus 295 ~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~ 341 (600)
+..+.+...+.. .+.++||||+++.+.
T Consensus 145 ---------------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 ---------------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred ---------------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 112334444432 356899999999875
No 403
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.00 E-value=0.6 Score=50.81 Aligned_cols=41 Identities=29% Similarity=0.327 Sum_probs=30.7
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEec
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSA 367 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SA 367 (600)
+++-.++|+|||---+|..-...+...+..+..+ ++++.=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEe
Confidence 5667899999999998877777777888777666 4555444
No 404
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=89.93 E-value=1.2 Score=45.49 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=59.4
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCCh
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~ 294 (600)
.+.+.+.|+.|.|||. ++-++...+....++ + +.-.+.+.++++.+..+. ++.+.
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~~~k~--------R----~HFh~Fm~~vh~~l~~~~-----------~~~~~ 116 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPIKRKR--------R----VHFHEFMLDVHSRLHQLR-----------GQDDP 116 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCccccc--------c----ccccHHHHHHHHHHHHHh-----------CCCcc
Confidence 4679999999999998 344443333221111 1 244577788888877764 11111
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhc-CcCCcEEEEeccCChh
Q 039378 295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI-SLARQMVMFSATWPIE 372 (600)
Q Consensus 295 ~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~-~~~~q~i~~SATl~~~ 372 (600)
-. .+.+.+ .....+|.|||.|- .+.+-.-.+..++..+ ....-+|..|-+.|.+
T Consensus 117 l~-----------------~va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 117 LP-----------------QVADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred HH-----------------HHHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 10 111221 33556999999993 4433333344444433 3445566667666643
No 405
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=89.89 E-value=1.3 Score=47.26 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.8
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
.+.+++.||+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 35799999999999985
No 406
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=89.82 E-value=2.1 Score=46.47 Aligned_cols=88 Identities=20% Similarity=0.286 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeehhcH----HHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecccc
Q 039378 414 DQRLLALLEKYHKSQRNRVLVFALYQLEA----DRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVA 489 (600)
Q Consensus 414 ~~~l~~~l~~~~~~~~~~~lVF~~s~~~~----~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~ 489 (600)
.-.++..+..+. .+.++.+-++|.--| ..+.++|...|+.+..+.|.+....|..+++...+|.+.++|.|-++
T Consensus 298 vVA~laml~ai~--~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL 375 (677)
T COG1200 298 VVALLAMLAAIE--AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL 375 (677)
T ss_pred HHHHHHHHHHHH--cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh
Confidence 334444444443 366888889986544 45566667779999999999999999999999999999999999654
Q ss_pred -ccCCCCCCcCEEEE
Q 039378 490 -ARGLDIPDVEVVIN 503 (600)
Q Consensus 490 -~~Gldi~~v~~VI~ 503 (600)
...+++.+...||.
T Consensus 376 iQd~V~F~~LgLVIi 390 (677)
T COG1200 376 IQDKVEFHNLGLVII 390 (677)
T ss_pred hhcceeecceeEEEE
Confidence 67899999988884
No 407
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.80 E-value=1.5 Score=46.71 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=30.6
Q ss_pred cccccCCCCHHHHHhhc-----CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhH
Q 039378 180 KSFTESKLPDDVLGCCK-----NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 180 ~~~~~~~l~~~l~~~~~-----~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~ 231 (600)
-+|.+.|--..+...+. ..++|-.+++-++.. -..+++++|+|+|||+.
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~---PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA---PSGVLLCGPPGCGKTLL 561 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC---CCceEEeCCCCccHHHH
Confidence 45666665555544332 444555555554433 35699999999999984
No 408
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.77 E-value=1.5 Score=48.16 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=23.6
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEecc
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSAT 368 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 368 (600)
...++++||||+|.|....+ ..+...+...+... +++|.+|
T Consensus 117 ~~~~KVvIIdev~~Lt~~a~-naLLk~LEepp~~~-~fIl~t~ 157 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNAF-NALLKTLEEPPPHV-KFIFATT 157 (576)
T ss_pred cCCceEEEEEChhhCCHHHH-HHHHHHHHcCCCCe-EEEEEeC
Confidence 45789999999998865322 23334444433333 3334445
No 409
>PHA00350 putative assembly protein
Probab=89.75 E-value=2.3 Score=43.84 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=13.5
Q ss_pred EEEEecCCCCchhHhhH
Q 039378 218 FIGIAKTGSGKTIAFGV 234 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~l 234 (600)
.++.|..|||||+..+-
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 36789999999996543
No 410
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.73 E-value=1.4 Score=45.17 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.4
Q ss_pred hcCCcEEEEecCCCCchhH
Q 039378 213 LNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~ 231 (600)
-.|+.+++.||+|+|||..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCCEEEEECCCCCChhHH
Confidence 3677899999999999985
No 411
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.49 E-value=3.3 Score=47.07 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.9
Q ss_pred CcEEEEecCCCCchhHh
Q 039378 216 RDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~ 232 (600)
.++|+.||+|+|||...
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 48999999999999863
No 412
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=89.46 E-value=2.3 Score=39.52 Aligned_cols=83 Identities=25% Similarity=0.317 Sum_probs=57.2
Q ss_pred HHHHHHHHhhc---CCCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccc-
Q 039378 417 LLALLEKYHKS---QRNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDV- 488 (600)
Q Consensus 417 l~~~l~~~~~~---~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~- 488 (600)
++.++..+... .+.++||.|++...+......+... ++.+..++|+.+.......+. +...|+|+|.-
T Consensus 54 ~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~ 129 (203)
T cd00268 54 LIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGR 129 (203)
T ss_pred HHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHH
Confidence 44555555443 4568999999999988877666543 678889999988766544333 66789999941
Q ss_pred ----cc-cCCCCCCcCEEEE
Q 039378 489 ----AA-RGLDIPDVEVVIN 503 (600)
Q Consensus 489 ----~~-~Gldi~~v~~VI~ 503 (600)
+. .-+++++++++|.
T Consensus 130 l~~~l~~~~~~~~~l~~lIv 149 (203)
T cd00268 130 LLDLLERGKLDLSKVKYLVL 149 (203)
T ss_pred HHHHHHcCCCChhhCCEEEE
Confidence 22 2356777888774
No 413
>PRK10436 hypothetical protein; Provisional
Probab=89.44 E-value=0.39 Score=50.79 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=24.0
Q ss_pred HHHHHHhhhhhcC--CcEEEEecCCCCchhHhhHHHHHHH
Q 039378 203 PIQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVPAMMHV 240 (600)
Q Consensus 203 ~~Q~~~i~~il~~--~d~i~~a~TGsGKT~~~~lp~l~~~ 240 (600)
+-|...+..++.. .-++++||||||||.. +..++.++
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 4455566555533 3588999999999986 33345443
No 414
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.18 E-value=4.8 Score=36.29 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=37.8
Q ss_pred ccceEEEEEcccchhhcCCCh--HHHHHHHHhcCcCCcEEEEeccCChhHHHHHH
Q 039378 326 LSEVSFVVLDEADRMLDMGFE--EPVRFILSKISLARQMVMFSATWPIEVHKLAE 378 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~--~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~ 378 (600)
-..+++||+||+=..++.++. ..+..++..-+....+|+..-..|+.+..++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 357899999999988887753 34555666666666677777777877666543
No 415
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.17 E-value=0.47 Score=43.71 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=25.4
Q ss_pred CCCcHHHHHHhhhhh-cCCcEEEEecCCCCchhH
Q 039378 199 KNPSPIQSHAWPFLL-NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il-~~~d~i~~a~TGsGKT~~ 231 (600)
...++-|...+...+ .+..+++++|||||||..
T Consensus 8 g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 8 GTFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 345677777777655 456899999999999984
No 416
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.03 E-value=1.5 Score=47.21 Aligned_cols=40 Identities=8% Similarity=0.145 Sum_probs=24.6
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEe
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFS 366 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~S 366 (600)
...++++||||||+|.... ...+...+...+....+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4678999999999986532 233444444445445445444
No 417
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=89.02 E-value=0.22 Score=36.30 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=21.3
Q ss_pred HHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHH
Q 039378 207 HAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVL 241 (600)
Q Consensus 207 ~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~ 241 (600)
+.++.-..|...++.+++|||||.. +-++..++
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTl--lDAi~~~L 47 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTL--LDAIQTVL 47 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHH--HHHHHHHH
Confidence 3334333445689999999999984 44455433
No 418
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=88.97 E-value=0.69 Score=44.47 Aligned_cols=52 Identities=13% Similarity=0.042 Sum_probs=32.9
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
|.-+++.|++|+|||+..+--+...+ .. +..+++++ +.+-..|+.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~-~~----------ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL-QM----------GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-Hc----------CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 45689999999999985332223333 22 22367776 4466677777777654
No 419
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=88.88 E-value=2.6 Score=42.29 Aligned_cols=54 Identities=9% Similarity=0.162 Sum_probs=30.6
Q ss_pred chHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEec
Q 039378 311 TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSA 367 (600)
Q Consensus 311 Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SA 367 (600)
....+.+.+..... ....+++|||+||.|.... ...+..++...+ ...+|+++.
T Consensus 108 ~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 108 QIREIKRFLSRPPL-EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred HHHHHHHHHccCcc-cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEEC
Confidence 33344444444332 3578999999999986532 233444555555 444444443
No 420
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.83 E-value=0.81 Score=48.91 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=14.5
Q ss_pred ccceEEEEEcccchhhcC
Q 039378 326 LSEVSFVVLDEADRMLDM 343 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~ 343 (600)
....+++||||||.|...
T Consensus 117 ~~~~KVvIIDEad~Lt~~ 134 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKE 134 (486)
T ss_pred cCCeeEEEEEChhhcCHH
Confidence 457899999999988543
No 421
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=88.81 E-value=0.63 Score=46.65 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=14.1
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
.++++.||+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4689999999999975
No 422
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=88.79 E-value=2.1 Score=44.54 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=15.1
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
.+.+++.||+|+|||+.
T Consensus 179 pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTML 195 (398)
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999985
No 423
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.77 E-value=0.35 Score=48.88 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=16.9
Q ss_pred hhcCCcEEEEecCCCCchhH
Q 039378 212 LLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 212 il~~~d~i~~a~TGsGKT~~ 231 (600)
+..+.+++++|+||||||..
T Consensus 157 v~~~~nili~G~tgSGKTTl 176 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF 176 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH
Confidence 34567999999999999984
No 424
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=88.67 E-value=1.4 Score=42.46 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=14.0
Q ss_pred cEEEEecCCCCchhHh
Q 039378 217 DFIGIAKTGSGKTIAF 232 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~ 232 (600)
++++.+|+|.|||..+
T Consensus 54 HvLl~GPPGlGKTTLA 69 (332)
T COG2255 54 HVLLFGPPGLGKTTLA 69 (332)
T ss_pred eEEeeCCCCCcHHHHH
Confidence 5999999999999853
No 425
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=88.62 E-value=2.8 Score=43.07 Aligned_cols=105 Identities=19% Similarity=0.142 Sum_probs=47.2
Q ss_pred EEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHH----HHHHHHhcCC-CCceEEEEeCCCC
Q 039378 219 IGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQI----YDVLNDAGKP-CGVKSVCVYGGTS 293 (600)
Q Consensus 219 i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~----~~~~~~~~~~-~~~~~~~~~~g~~ 293 (600)
|+.++-|+|||.+.++.++..++..+. ...++++ |+..-+... ...+..+... ..+..........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~--------~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP--------GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS----------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC--------CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE
Confidence 467899999999877766776666543 1234555 665554442 2233333333 1121110011100
Q ss_pred hHHHHHHHhcCCcEEEEchHHH--HHHHHccCCCccceEEEEEcccchhhcC
Q 039378 294 KQPQITALRSGVDIVIGTPGRL--IDLIEMNVCHLSEVSFVVLDEADRMLDM 343 (600)
Q Consensus 294 ~~~~~~~l~~~~~Iiv~Tp~~l--~~~l~~~~~~l~~~~~lViDEah~l~~~ 343 (600)
.+..+..|.+.+-..= ..-+. -..+++|++||+-.+.+.
T Consensus 72 ------~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~ 112 (384)
T PF03237_consen 72 ------ILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDD 112 (384)
T ss_dssp ------EETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTH
T ss_pred ------EecCceEEEEecccccccccccc-----ccccceeeeeecccCchH
Confidence 0134456666663321 11221 246789999998877543
No 426
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=88.58 E-value=0.44 Score=52.75 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=35.8
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
.++++.||||||||..+++|-+..+ + ..++|+=|--|+.........+.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~---~----------gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF---K----------GSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC---C----------CCEEEEeCCchHHHHHHHHHHhC
Confidence 4799999999999999999976642 1 12677778888866655544443
No 427
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.57 E-value=1.7 Score=47.29 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=14.4
Q ss_pred ccceEEEEEcccchhhc
Q 039378 326 LSEVSFVVLDEADRMLD 342 (600)
Q Consensus 326 l~~~~~lViDEah~l~~ 342 (600)
....+++||||+|.|..
T Consensus 117 ~~~~KVvIIDEa~~Ls~ 133 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSN 133 (563)
T ss_pred cCCCEEEEEEChhhcCH
Confidence 46789999999999865
No 428
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.47 E-value=4.5 Score=46.62 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=14.5
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
.+.|+.||.|+|||..
T Consensus 209 ~n~lLvG~pGvGKTal 224 (852)
T TIGR03345 209 NNPILTGEAGVGKTAV 224 (852)
T ss_pred CceeEECCCCCCHHHH
Confidence 4799999999999985
No 429
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.42 E-value=0.94 Score=46.22 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=14.8
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+..++++||||||||..
T Consensus 122 ~g~ili~G~tGSGKTT~ 138 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT 138 (343)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45789999999999985
No 430
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=88.41 E-value=6.3 Score=39.17 Aligned_cols=17 Identities=47% Similarity=0.558 Sum_probs=14.9
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
++.+++.+|-|||||..
T Consensus 49 snsviiigprgsgkT~l 65 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTIL 65 (408)
T ss_pred CCceEEEccCCCCceEe
Confidence 46799999999999974
No 431
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.36 E-value=7 Score=38.92 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=67.4
Q ss_pred EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEc--ccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChH
Q 039378 218 FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLS--PTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQ 295 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~--Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 295 (600)
+++.+-.|+|||.. +.=+.+++.... .++++.+ --|+-|..+.+.+.+. .++.++....|.+..
T Consensus 142 il~vGVNG~GKTTT--IaKLA~~l~~~g---------~~VllaA~DTFRAaAiEQL~~w~er---~gv~vI~~~~G~DpA 207 (340)
T COG0552 142 ILFVGVNGVGKTTT--IAKLAKYLKQQG---------KSVLLAAGDTFRAAAIEQLEVWGER---LGVPVISGKEGADPA 207 (340)
T ss_pred EEEEecCCCchHhH--HHHHHHHHHHCC---------CeEEEEecchHHHHHHHHHHHHHHH---hCCeEEccCCCCCcH
Confidence 67889999999996 344555555432 2244443 2456654444443333 345554422222221
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcC-CChHHHHHHHHhcCcCC------cEEEEecc
Q 039378 296 PQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM-GFEEPVRFILSKISLAR------QMVMFSAT 368 (600)
Q Consensus 296 ~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~-~~~~~~~~il~~~~~~~------q~i~~SAT 368 (600)
.- ..+.++.. .-+++++|++|=|=||.+. +....+..|.+-+.+.. -++.+=||
T Consensus 208 aV-----------------afDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt 268 (340)
T COG0552 208 AV-----------------AFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT 268 (340)
T ss_pred HH-----------------HHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcc
Confidence 11 12222211 1356789999999998764 23445555555444332 23444788
Q ss_pred CChhHHHHHHHh
Q 039378 369 WPIEVHKLAEEY 380 (600)
Q Consensus 369 l~~~~~~~~~~~ 380 (600)
.-.+--.-++.|
T Consensus 269 tGqnal~QAk~F 280 (340)
T COG0552 269 TGQNALSQAKIF 280 (340)
T ss_pred cChhHHHHHHHH
Confidence 765544444443
No 432
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.29 E-value=0.38 Score=47.29 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=29.2
Q ss_pred HHHhhhh-hcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHH
Q 039378 206 SHAWPFL-LNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTREL 266 (600)
Q Consensus 206 ~~~i~~i-l~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~L 266 (600)
.+.+... ..+.+++++|+||||||.. +-.++..+-.. ..+++++-.+.|+
T Consensus 117 ~~~l~~~v~~~~~ili~G~tGSGKTT~-l~all~~i~~~----------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 117 AEFLRSAVRGRGNILISGPTGSGKTTL-LNALLEEIPPE----------DERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHCHHTTEEEEEEESTTSSHHHH-HHHHHHHCHTT----------TSEEEEEESSS-S
T ss_pred HHHHhhccccceEEEEECCCccccchH-HHHHhhhcccc----------ccceEEeccccce
Confidence 3334333 3456899999999999985 23333332222 1336777766666
No 433
>PRK14701 reverse gyrase; Provisional
Probab=88.26 E-value=3 Score=51.19 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=53.5
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhC------CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccc
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRS------GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDV 488 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~------~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~ 488 (600)
.+.++||.++++.-+.++...|+.. ++.+..+||+++..++..+++.+..|...|||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 3568999999999999998888763 467889999999999999999999999999999963
No 434
>PRK06904 replicative DNA helicase; Validated
Probab=88.22 E-value=6.5 Score=42.00 Aligned_cols=117 Identities=18% Similarity=0.096 Sum_probs=56.5
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCC-C
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGG-T 292 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g-~ 292 (600)
.|.=++++|.||+|||.. ++-+...+.... +..+++++. -.-..|+..++...... +....+..| .
T Consensus 220 ~G~LiiIaarPg~GKTaf-alnia~~~a~~~---------g~~Vl~fSl-EMs~~ql~~Rlla~~s~--v~~~~i~~g~~ 286 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTF-AMNLCENAAMAS---------EKPVLVFSL-EMPAEQIMMRMLASLSR--VDQTKIRTGQN 286 (472)
T ss_pred CCcEEEEEeCCCCChHHH-HHHHHHHHHHhc---------CCeEEEEec-cCCHHHHHHHHHHhhCC--CCHHHhccCCC
Confidence 344477889999999974 343444433211 122566543 23345666554443222 221112222 2
Q ss_pred ChHHHH-------HHHhcCCcEEE-----EchHHHHHHHHccCCCccceEEEEEcccchhhcC
Q 039378 293 SKQPQI-------TALRSGVDIVI-----GTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM 343 (600)
Q Consensus 293 ~~~~~~-------~~l~~~~~Iiv-----~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~ 343 (600)
-....+ ..+...+++.| .|+..+...+++.......+++||||=.+.|...
T Consensus 287 l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 287 LDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCC
Confidence 222222 22323344666 3555555444321111125789999988877543
No 435
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.19 E-value=0.62 Score=45.53 Aligned_cols=30 Identities=30% Similarity=0.318 Sum_probs=21.6
Q ss_pred cHHHHHHhhhhhc-C-CcEEEEecCCCCchhH
Q 039378 202 SPIQSHAWPFLLN-G-RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 202 ~~~Q~~~i~~il~-~-~d~i~~a~TGsGKT~~ 231 (600)
.+-|.+.|..++. . .-++++++||||||..
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~ 96 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT 96 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH
Confidence 3556666665554 3 3588999999999985
No 436
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=88.18 E-value=3.1 Score=40.59 Aligned_cols=112 Identities=20% Similarity=0.168 Sum_probs=55.4
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcc---cHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSP---TRELADQIYDVLNDAGKPCGVKSVCVYGG 291 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~P---tr~La~q~~~~~~~~~~~~~~~~~~~~~g 291 (600)
|.=+++.|.||.|||.. ++-+..++.... +..+++++. ..+++..+...... +....+..+
T Consensus 19 g~L~vi~a~pg~GKT~~-~l~ia~~~a~~~---------~~~vly~SlEm~~~~l~~R~la~~s~------v~~~~i~~g 82 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAF-ALQIALNAALNG---------GYPVLYFSLEMSEEELAARLLARLSG------VPYNKIRSG 82 (259)
T ss_dssp T-EEEEEESTTSSHHHH-HHHHHHHHHHTT---------SSEEEEEESSS-HHHHHHHHHHHHHT------STHHHHHCC
T ss_pred CcEEEEEecccCCchHH-HHHHHHHHHHhc---------CCeEEEEcCCCCHHHHHHHHHHHhhc------chhhhhhcc
Confidence 34478889999999985 444444444431 123677764 23333333222211 111111122
Q ss_pred CChHHHHHH-------HhcCCcEEE-E----chHHHHHHHHccCCCccceEEEEEcccchhhcC
Q 039378 292 TSKQPQITA-------LRSGVDIVI-G----TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM 343 (600)
Q Consensus 292 ~~~~~~~~~-------l~~~~~Iiv-~----Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~ 343 (600)
......+.. +.. ..+.| . |++.+...+..-......+++||||=.|.|...
T Consensus 83 ~l~~~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 83 DLSDEEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp GCHHHHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred ccCHHHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 222222222 222 33433 3 445555555432222267899999999988763
No 437
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=88.09 E-value=2 Score=46.91 Aligned_cols=82 Identities=22% Similarity=0.093 Sum_probs=58.8
Q ss_pred HHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCC
Q 039378 203 PIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCG 282 (600)
Q Consensus 203 ~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~ 282 (600)
.-|+.|....+..+=-|+++|+|+|||++ .+-++..++.+..+ ......+||+|=|...+.|....+....
T Consensus 381 sSq~~A~qs~ltyelsliqgppGTgkt~v-tlkav~tLL~n~s~----~~~~epIlvvC~Tnhavdq~ligiy~~q---- 451 (1025)
T KOG1807|consen 381 SSQQFAKQSKLTYELSLIQGPPGTGKTLV-TLKAVDTLLLNSSG----YTEPEPILVVCLTNHAVDQYLIGIYYHQ---- 451 (1025)
T ss_pred HHHHHHHHHHhhhhhheeecCCCCCceee-hHHHHHHHHhcccc----cccccceeeeehhhHHHHHHHHHHHhcC----
Confidence 44888888888888889999999999998 45568888877532 2223447999999998888877766422
Q ss_pred ceEEEEeCCCC
Q 039378 283 VKSVCVYGGTS 293 (600)
Q Consensus 283 ~~~~~~~~g~~ 293 (600)
-..++..|+..
T Consensus 452 rpsImr~gsr~ 462 (1025)
T KOG1807|consen 452 RPSIMRQGSRF 462 (1025)
T ss_pred CceEEEecccc
Confidence 23344455543
No 438
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.05 E-value=1.5 Score=48.37 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=24.7
Q ss_pred CccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEecc
Q 039378 325 HLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSAT 368 (600)
Q Consensus 325 ~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 368 (600)
.....+++||||+|.|.... ...+...+...+... +++|.+|
T Consensus 118 ~~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred ccCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeC
Confidence 35678999999999986532 223344444443333 4445555
No 439
>PHA00012 I assembly protein
Probab=88.03 E-value=8.7 Score=38.24 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=29.8
Q ss_pred cceEEEEEcccchhhcC-CCh----HHHHHHHHhcCcC-CcEEEEeccCChhHHHHHHHhc
Q 039378 327 SEVSFVVLDEADRMLDM-GFE----EPVRFILSKISLA-RQMVMFSATWPIEVHKLAEEYM 381 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~-~~~----~~~~~il~~~~~~-~q~i~~SATl~~~~~~~~~~~~ 381 (600)
..-.++|+||||..++. ++. ..+...+...++. .-++++|-. +..+...++..+
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~-ps~VDs~IR~ll 139 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQD-ISIMDKQAREAL 139 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCC-HHHHhHHHHHhh
Confidence 45679999999998752 111 3244444444433 345555555 334554444433
No 440
>PRK13764 ATPase; Provisional
Probab=87.94 E-value=0.74 Score=50.09 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=18.7
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHH
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHV 240 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~ 240 (600)
.+.+++++||||||||.. +-.++.++
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 356899999999999985 33334443
No 441
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=87.79 E-value=0.85 Score=47.38 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=31.6
Q ss_pred hhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHH
Q 039378 210 PFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIY 271 (600)
Q Consensus 210 ~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~ 271 (600)
|.-...+++++.|.||||||.+ +-+++..+... +-+++|.=|.-+.....+
T Consensus 10 ~~~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~----------g~~~iI~D~kg~~~~~f~ 60 (386)
T PF10412_consen 10 PKDSENRHILIIGATGSGKTQA-IRHLLDQIRAR----------GDRAIIYDPKGEFTERFY 60 (386)
T ss_dssp -GGGGGG-EEEEE-TTSSHHHH-HHHHHHHHHHT----------T-EEEEEEETTHHHHHH-
T ss_pred ccchhhCcEEEECCCCCCHHHH-HHHHHHHHHHc----------CCEEEEEECCchHHHHhc
Confidence 3445567899999999999974 56666666554 233677777766644433
No 442
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=87.60 E-value=1.6 Score=49.07 Aligned_cols=71 Identities=18% Similarity=0.097 Sum_probs=52.9
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.+++-|++++... ...++|.|..|||||.+ +..-+.++.....- ....+|.|+=|+..|.++.+++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~v-lt~Ria~li~~~~v------~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRV-LTERIAYLIAAGGV------DPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhh-HHHHHHHHHHcCCc------ChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4778899999876 56788889999999997 33344555544211 122378999999999999999998875
No 443
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.60 E-value=2 Score=44.65 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=14.3
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+.+++.||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5699999999999985
No 444
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=87.57 E-value=0.57 Score=51.21 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=24.9
Q ss_pred cHHHHHHhhhhhcC--CcEEEEecCCCCchhHhhHHHHHHH
Q 039378 202 SPIQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVPAMMHV 240 (600)
Q Consensus 202 ~~~Q~~~i~~il~~--~d~i~~a~TGsGKT~~~~lp~l~~~ 240 (600)
.+-|...+..++.. .-++++||||||||.. +..++..+
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 35566666665543 3478999999999986 33444443
No 445
>PRK10263 DNA translocase FtsK; Provisional
Probab=87.56 E-value=2.3 Score=49.92 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=14.8
Q ss_pred CcEEEEecCCCCchhHh
Q 039378 216 RDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~ 232 (600)
.+++|.|.||||||.+.
T Consensus 1011 PHLLIAGaTGSGKSv~L 1027 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGV 1027 (1355)
T ss_pred CcEEEecCCCCCHHHHH
Confidence 47899999999999873
No 446
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=87.56 E-value=1.7 Score=49.69 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=14.4
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+..+++.||+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 34688999999999985
No 447
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=87.32 E-value=1 Score=45.73 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=14.3
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
..+++.||+|+|||..
T Consensus 52 ~~~ll~GppG~GKT~l 67 (328)
T PRK00080 52 DHVLLYGPPGLGKTTL 67 (328)
T ss_pred CcEEEECCCCccHHHH
Confidence 4699999999999985
No 448
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=87.19 E-value=4.6 Score=42.58 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=18.4
Q ss_pred hcCCcEEEEecCCCCchhHhhHHHHHHH
Q 039378 213 LNGRDFIGIAKTGSGKTIAFGVPAMMHV 240 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~~~lp~l~~~ 240 (600)
..|.=+++.|++|+|||.. ++-+..++
T Consensus 192 ~~g~liviag~pg~GKT~~-al~ia~~~ 218 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTL-ALNIAENV 218 (421)
T ss_pred CCCceEEEEeCCCCCHHHH-HHHHHHHH
Confidence 3455678899999999975 34344333
No 449
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.14 E-value=1.3 Score=44.49 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=36.8
Q ss_pred cccccccCCCCHHHHHhhcCCCCCcHHHHHHhhh-hhcCCcEEEEecCCCCchhHhhHHHH
Q 039378 178 ALKSFTESKLPDDVLGCCKNFKNPSPIQSHAWPF-LLNGRDFIGIAKTGSGKTIAFGVPAM 237 (600)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~~~~~~~~~Q~~~i~~-il~~~d~i~~a~TGsGKT~~~~lp~l 237 (600)
.+..+...++++.-+. .+..+++.|..-+-. +..+++++++++||||||.. +.+++
T Consensus 108 ~IRk~~~~~~t~~~l~---~~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall 164 (312)
T COG0630 108 TIRKFSDEPITPEDLI---EYGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALL 164 (312)
T ss_pred EEEcCCCCCCCHHHHh---hcCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHH
Confidence 3445555555554443 355677777766554 44667999999999999985 44433
No 450
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.08 E-value=3.4 Score=47.76 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=14.4
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
.+.++.||+|.|||..
T Consensus 195 ~n~lL~G~pGvGKT~l 210 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAI 210 (852)
T ss_pred CceEEEcCCCCCHHHH
Confidence 4799999999999985
No 451
>COG1485 Predicted ATPase [General function prediction only]
Probab=86.99 E-value=1.7 Score=43.31 Aligned_cols=117 Identities=18% Similarity=0.174 Sum_probs=68.4
Q ss_pred HhhhhhcC-----CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCC
Q 039378 208 AWPFLLNG-----RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCG 282 (600)
Q Consensus 208 ~i~~il~~-----~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~ 282 (600)
++.++... +.+.+.|+-|.|||. ++-++.+.+.... -.-++....+..+++.+..+...
T Consensus 53 ~l~~lf~r~~~~~~GlYl~GgVGrGKT~--LMD~Fy~~lp~~~------------k~R~HFh~FM~~vH~~l~~l~g~-- 116 (367)
T COG1485 53 ALGWLFGRDHGPVRGLYLWGGVGRGKTM--LMDLFYESLPGER------------KRRLHFHRFMARVHQRLHTLQGQ-- 116 (367)
T ss_pred ccccccccCCCCCceEEEECCCCccHHH--HHHHHHhhCCccc------------cccccHHHHHHHHHHHHHHHcCC--
Confidence 45555544 568899999999997 4544544443322 12347778888888888877521
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHH-hcCcCCc
Q 039378 283 VKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS-KISLARQ 361 (600)
Q Consensus 283 ~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~-~~~~~~q 361 (600)
.+.- +. +..- ...+.++|.|||.| +.+.+-.-.+..++. .+..+..
T Consensus 117 ---------~dpl----------------~~-iA~~------~~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~ 163 (367)
T COG1485 117 ---------TDPL----------------PP-IADE------LAAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVV 163 (367)
T ss_pred ---------CCcc----------------HH-HHHH------HHhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcE
Confidence 1100 00 0111 13456799999998 344332222333333 3355677
Q ss_pred EEEEeccCChhH
Q 039378 362 MVMFSATWPIEV 373 (600)
Q Consensus 362 ~i~~SATl~~~~ 373 (600)
++..|-|.|..+
T Consensus 164 lvaTSN~~P~~L 175 (367)
T COG1485 164 LVATSNTAPDNL 175 (367)
T ss_pred EEEeCCCChHHh
Confidence 888888888544
No 452
>PRK05973 replicative DNA helicase; Provisional
Probab=86.95 E-value=1.3 Score=42.34 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=38.8
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 199 KNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
..++|... ..--+..|.-++|.|++|+|||+..+- ++...... +..+++++-- +-..|+.+.+..++
T Consensus 49 ~~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalq-fa~~~a~~----------Ge~vlyfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 49 AATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLE-LAVEAMKS----------GRTGVFFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred cCCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHH-HHHHHHhc----------CCeEEEEEEe-CCHHHHHHHHHHcC
Confidence 34556332 334455666789999999999985333 23333222 2235666532 33567777776664
No 453
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=86.94 E-value=1.6 Score=49.53 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=14.1
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+.+++.||+|+|||+.
T Consensus 488 ~giLL~GppGtGKT~l 503 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLL 503 (733)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4689999999999984
No 454
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.76 E-value=3.3 Score=47.79 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=14.4
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
.++|+.||+|+|||..
T Consensus 200 ~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 200 NNPVLIGEPGVGKTAI 215 (857)
T ss_pred CceEEECCCCCCHHHH
Confidence 4799999999999985
No 455
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=86.72 E-value=0.65 Score=51.35 Aligned_cols=49 Identities=18% Similarity=0.124 Sum_probs=36.1
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
.++++.||||||||..+++|-+..+- .-++|+=|--|+.........+.
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~-------------~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWP-------------GSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCC-------------CCEEEEeCcchHHHHHHHHHHhC
Confidence 57999999999999999999776531 11677778888866555544443
No 456
>PF12846 AAA_10: AAA-like domain
Probab=86.64 E-value=0.92 Score=45.17 Aligned_cols=42 Identities=21% Similarity=0.417 Sum_probs=28.6
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHH
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELAD 268 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~ 268 (600)
.++++.|+||+|||.... .++..++.. +..++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~----------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR----------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc----------CCCEEEEcCCchHHH
Confidence 578999999999998744 455555444 334677777655543
No 457
>CHL00176 ftsH cell division protein; Validated
Probab=86.57 E-value=2.7 Score=46.57 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=14.3
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+.+++.||+|+|||+.
T Consensus 217 ~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 217 KGVLLVGPPGTGKTLL 232 (638)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4699999999999984
No 458
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=86.52 E-value=2.6 Score=45.51 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=14.3
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+.+++.||+|+|||+.
T Consensus 89 ~giLL~GppGtGKT~l 104 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLL 104 (495)
T ss_pred CcEEEECCCCCCHHHH
Confidence 4699999999999984
No 459
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=86.49 E-value=0.64 Score=50.72 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.0
Q ss_pred hcCCcEEEEecCCCCchhH
Q 039378 213 LNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~ 231 (600)
..|+-+.+.||+|||||..
T Consensus 359 ~~G~~vaIvG~SGsGKSTL 377 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTL 377 (529)
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567789999999999983
No 460
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=86.36 E-value=1.1 Score=49.22 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=25.0
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEE
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVM 364 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~ 364 (600)
+.+-.++|+|||..-+|..-...+...+..+...+.+++
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 445578999999988876555566665554444443333
No 461
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=86.31 E-value=0.7 Score=49.39 Aligned_cols=30 Identities=30% Similarity=0.348 Sum_probs=22.0
Q ss_pred cHHHHHHhhhhhcCC-c-EEEEecCCCCchhH
Q 039378 202 SPIQSHAWPFLLNGR-D-FIGIAKTGSGKTIA 231 (600)
Q Consensus 202 ~~~Q~~~i~~il~~~-d-~i~~a~TGsGKT~~ 231 (600)
.+-|.+.+..++... . ++++||||||||..
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt 258 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT 258 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 455666776666543 3 67899999999985
No 462
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=86.31 E-value=1.4 Score=46.30 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=53.6
Q ss_pred EEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccc-----cccC----CCCCCc
Q 039378 432 VLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDV-----AARG----LDIPDV 498 (600)
Q Consensus 432 ~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~-----~~~G----ldi~~v 498 (600)
.|||+++++-|.++...|... ++.+..|.|||....+++++.+ ...|+|||+- +..+ =++..+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 799999999999999998643 8899999999999999999987 5669999962 2221 145667
Q ss_pred CEEE
Q 039378 499 EVVI 502 (600)
Q Consensus 499 ~~VI 502 (600)
+++|
T Consensus 342 kcLV 345 (731)
T KOG0347|consen 342 KCLV 345 (731)
T ss_pred eEEE
Confidence 7766
No 463
>CHL00095 clpC Clp protease ATP binding subunit
Probab=86.25 E-value=4.5 Score=46.65 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=15.0
Q ss_pred CcEEEEecCCCCchhHh
Q 039378 216 RDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~ 232 (600)
+++|+.||+|.|||..+
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 48999999999999863
No 464
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=86.15 E-value=4.3 Score=38.97 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=12.9
Q ss_pred EEEEecCCCCchhHh
Q 039378 218 FIGIAKTGSGKTIAF 232 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~ 232 (600)
.++.||.|+|||...
T Consensus 4 ~ll~g~~G~GKS~la 18 (239)
T cd01125 4 SALVAPGGTGKSSLL 18 (239)
T ss_pred eEEEcCCCCCHHHHH
Confidence 578899999999863
No 465
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=85.99 E-value=1 Score=49.72 Aligned_cols=49 Identities=27% Similarity=0.268 Sum_probs=36.3
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
.++++.||||+|||..+++|.+.. .+ .-++|+=|..|+........++.
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~---~~----------gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALK---WG----------GPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhc---CC----------CCEEEEeCcHHHHHHHHHHHHHC
Confidence 578999999999999999997542 21 12577779989877666655444
No 466
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.97 E-value=4 Score=42.60 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=56.8
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccc-------cccCCCCC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDV-------AARGLDIP 496 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~-------~~~Gldi~ 496 (600)
...+|||.|++++-+.+++...++. .+.++..-||++-..+..+++ ....|+|||+- -+.++|+.
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hCCCEEEecchhHHHHhccCCCcccc
Confidence 3568999999999988877665543 688999999999998888877 45679999962 24678888
Q ss_pred CcCEEEE
Q 039378 497 DVEVVIN 503 (600)
Q Consensus 497 ~v~~VI~ 503 (600)
++.++|.
T Consensus 327 siEVLvl 333 (691)
T KOG0338|consen 327 SIEVLVL 333 (691)
T ss_pred ceeEEEe
Confidence 8887774
No 467
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=85.72 E-value=5.7 Score=42.27 Aligned_cols=145 Identities=13% Similarity=0.063 Sum_probs=78.4
Q ss_pred CCcHHHHHHhhhhhc------C----CcEEEEecCCCCchhHhh-HHHHHHHHhcccCccCCCCCCceEEEEcccHHHHH
Q 039378 200 NPSPIQSHAWPFLLN------G----RDFIGIAKTGSGKTIAFG-VPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELAD 268 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~------~----~d~i~~a~TGsGKT~~~~-lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~ 268 (600)
.+-|+|.-++-.++. + +.+++..|=|-|||.... |.....+..... +-...|++|+.+-+.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~--------~~~~~i~A~s~~qa~ 132 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRS--------GAGIYILAPSVEQAA 132 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhc--------CCcEEEEeccHHHHH
Confidence 456899999988772 1 247888899999997433 322223333322 344799999999888
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHH---HHHHc--cCCCccceEEEEEcccchhhcC
Q 039378 269 QIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLI---DLIEM--NVCHLSEVSFVVLDEADRMLDM 343 (600)
Q Consensus 269 q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~---~~l~~--~~~~l~~~~~lViDEah~l~~~ 343 (600)
+.++.++....... +... ......+-+..+..... ..+.. +...-.+..+.|+||.|.....
T Consensus 133 ~~F~~ar~mv~~~~--------~l~~-----~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~ 199 (546)
T COG4626 133 NSFNPARDMVKRDD--------DLRD-----LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ 199 (546)
T ss_pred HhhHHHHHHHHhCc--------chhh-----hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH
Confidence 88887776543211 0000 00000111122222211 11111 2233456789999999986553
Q ss_pred CChHHHHHHHHhcC--cCCcEEEEec
Q 039378 344 GFEEPVRFILSKIS--LARQMVMFSA 367 (600)
Q Consensus 344 ~~~~~~~~il~~~~--~~~q~i~~SA 367 (600)
+ ..+..+...+. ++.+++..|.
T Consensus 200 ~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 200 E--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred H--HHHHHHHhhhccCcCceEEEEec
Confidence 2 34444444332 3445555554
No 468
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=85.65 E-value=2.2 Score=42.96 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=29.9
Q ss_pred cceEEEEEcccchhhcC-CChHHHHHHHHhc------CcCCcEEEEeccCChhHHHHHHHhc
Q 039378 327 SEVSFVVLDEADRMLDM-GFEEPVRFILSKI------SLARQMVMFSATWPIEVHKLAEEYM 381 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~-~~~~~~~~il~~~------~~~~q~i~~SATl~~~~~~~~~~~~ 381 (600)
.++++||||=+-++... .....+..+...+ .+..-++.++||........+..+.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 56789999988876432 1123344433322 1223478899996554333344443
No 469
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.65 E-value=3.6 Score=43.30 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=16.0
Q ss_pred ccceEEEEEcccchhhcCC
Q 039378 326 LSEVSFVVLDEADRMLDMG 344 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~ 344 (600)
-+.+++||+|+..+++++.
T Consensus 596 kS~lsiivvDdiErLiD~v 614 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYV 614 (744)
T ss_pred cCcceEEEEcchhhhhccc
Confidence 3567899999999999873
No 470
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.63 E-value=3.2 Score=44.50 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=62.0
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-ccccC------C-CCCCcCE
Q 039378 429 RNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAARG------L-DIPDVEV 500 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~~G------l-di~~v~~ 500 (600)
.+.+||.++++.-+......|...|+.+..++++.+..++..++.....|..++|++|+ .+... + ....+.+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 56799999999999988889999999999999999999999999999999999999995 22222 2 4556777
Q ss_pred EEE
Q 039378 501 VIN 503 (600)
Q Consensus 501 VI~ 503 (600)
||.
T Consensus 131 iVi 133 (470)
T TIGR00614 131 IAV 133 (470)
T ss_pred EEE
Confidence 663
No 471
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=85.48 E-value=4.2 Score=46.18 Aligned_cols=16 Identities=38% Similarity=0.389 Sum_probs=13.5
Q ss_pred cEEEEecCCCCchhHh
Q 039378 217 DFIGIAKTGSGKTIAF 232 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~ 232 (600)
.+++.||||+|||..+
T Consensus 486 ~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 486 SFLFTGPTGVGKTELA 501 (731)
T ss_pred eEEEECCCCccHHHHH
Confidence 3789999999999853
No 472
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.47 E-value=2.5 Score=48.66 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=13.3
Q ss_pred EEEEecCCCCchhHh
Q 039378 218 FIGIAKTGSGKTIAF 232 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~ 232 (600)
++++||||+|||..+
T Consensus 599 ~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 599 FLLVGPSGVGKTETA 613 (852)
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999853
No 473
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=85.46 E-value=0.97 Score=42.07 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=12.6
Q ss_pred EEEEecCCCCchhH
Q 039378 218 FIGIAKTGSGKTIA 231 (600)
Q Consensus 218 ~i~~a~TGsGKT~~ 231 (600)
++++||||||||..
T Consensus 4 ilI~GptGSGKTTl 17 (198)
T cd01131 4 VLVTGPTGSGKSTT 17 (198)
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999985
No 474
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.33 E-value=5.1 Score=41.36 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=13.4
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.++++||.|+|||..
T Consensus 41 ~~L~~G~~G~GKt~~ 55 (367)
T PRK14970 41 ALLFCGPRGVGKTTC 55 (367)
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999975
No 475
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.27 E-value=3.6 Score=46.85 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.++.+++.||+|+|||..
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 346799999999999974
No 476
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=85.19 E-value=1.7 Score=44.53 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=13.2
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
..++.||.|+|||..
T Consensus 38 ~~Ll~G~~G~GKt~~ 52 (355)
T TIGR02397 38 AYLFSGPRGTGKTSI 52 (355)
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999985
No 477
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=85.16 E-value=4.6 Score=45.15 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=23.6
Q ss_pred cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHH
Q 039378 217 DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTREL 266 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~L 266 (600)
.+++.||||.|||..+ -++...+.... ..+|-....|-
T Consensus 523 sFlF~GPTGVGKTELA--kaLA~~Lfg~e----------~aliR~DMSEy 560 (786)
T COG0542 523 SFLFLGPTGVGKTELA--KALAEALFGDE----------QALIRIDMSEY 560 (786)
T ss_pred EEEeeCCCcccHHHHH--HHHHHHhcCCC----------ccceeechHHH
Confidence 4888999999999852 23333333211 14676676665
No 478
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=85.07 E-value=0.85 Score=50.08 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=36.9
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
.++++.||||||||..+++|-+.. .+ .-++|+=|.-|+.......-++.+
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~---~~----------gS~VV~DpKgE~~~~Ta~~R~~~G 261 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALK---YG----------GPLVCLDPSTEVAPMVCEHRRQAG 261 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhc---CC----------CCEEEEEChHHHHHHHHHHHHHcC
Confidence 579999999999999999996443 22 126888899898766665544443
No 479
>PRK06620 hypothetical protein; Validated
Probab=85.00 E-value=6.5 Score=37.07 Aligned_cols=106 Identities=8% Similarity=0.050 Sum_probs=55.9
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCC-ceEEEEeCCC--ChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEE
Q 039378 257 CLVLSPTRELADQIYDVLNDAGKPCG-VKSVCVYGGT--SKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVV 333 (600)
Q Consensus 257 ~liv~Ptr~La~q~~~~~~~~~~~~~-~~~~~~~~g~--~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 333 (600)
-+|+.+.-..|..+...+.+...... .....++|.. .+......+...+...+.+....... .....++|+
T Consensus 17 ~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~------~~~~~d~ll 90 (214)
T PRK06620 17 EFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEE------ILEKYNAFI 90 (214)
T ss_pred hhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchh------HHhcCCEEE
Confidence 37889977777777666654211111 2456777754 44444444433344444443322111 134557899
Q ss_pred EcccchhhcCCChHHHHHHHHhcCcCCcEEEEecc-CChh
Q 039378 334 LDEADRMLDMGFEEPVRFILSKISLARQMVMFSAT-WPIE 372 (600)
Q Consensus 334 iDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SAT-l~~~ 372 (600)
|||+|.+-+ ..+..+++.+......+++|+| .|+.
T Consensus 91 iDdi~~~~~----~~lf~l~N~~~e~g~~ilits~~~p~~ 126 (214)
T PRK06620 91 IEDIENWQE----PALLHIFNIINEKQKYLLLTSSDKSRN 126 (214)
T ss_pred EeccccchH----HHHHHHHHHHHhcCCEEEEEcCCCccc
Confidence 999996421 3445555555444334555554 4543
No 480
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=84.96 E-value=9.2 Score=38.73 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=31.7
Q ss_pred cceEEEEEcccchhhcCCC--hHHHHHHHHhcCcCCcEEEEeccCChhHH
Q 039378 327 SEVSFVVLDEADRMLDMGF--EEPVRFILSKISLARQMVMFSATWPIEVH 374 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~--~~~~~~il~~~~~~~q~i~~SATl~~~~~ 374 (600)
..--+||+|-||.+-+++- .+.+..+-..++...-.|++|+++.+...
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y 163 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQY 163 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHh
Confidence 3456899999999988652 22333333445555567899999886543
No 481
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=84.96 E-value=4 Score=43.30 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.8
Q ss_pred cEEEEecCCCCchhHh
Q 039378 217 DFIGIAKTGSGKTIAF 232 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~ 232 (600)
..|+.||.|+|||.++
T Consensus 41 a~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 41 AYLFSGIRGTGKTTLA 56 (451)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4789999999999864
No 482
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=84.81 E-value=0.94 Score=47.52 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=32.2
Q ss_pred hhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHH
Q 039378 209 WPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQ 269 (600)
Q Consensus 209 i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q 269 (600)
+|.-...+++++.|+||||||.. +..++..+... +.+++|+=|..++...
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~----------~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRAR----------GDRAIIYDPNGGFVSK 85 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhc----------CCCEEEEeCCcchhHh
Confidence 33444557899999999999985 33344444433 2236777888776543
No 483
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.80 E-value=0.93 Score=46.24 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=20.1
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHhc
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSN 243 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~ 243 (600)
...|+|+.+|||||||+.+.. |.+++.-
T Consensus 225 eKSNvLllGPtGsGKTllaqT--LAr~ldV 252 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQT--LARVLDV 252 (564)
T ss_pred ecccEEEECCCCCchhHHHHH--HHHHhCC
Confidence 345799999999999995433 5555543
No 484
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.76 E-value=5.6 Score=39.24 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=58.7
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcc-----------cHHHHHHHHHHHHHhcCCCCce
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSP-----------TRELADQIYDVLNDAGKPCGVK 284 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~P-----------tr~La~q~~~~~~~~~~~~~~~ 284 (600)
+=+++.||+|+|||.. +=++.+++.-+-. .+.... .||=.. +--|+.++++.+.++....+.-
T Consensus 178 RliLlhGPPGTGKTSL-CKaLaQkLSIR~~----~~y~~~-~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~l 251 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSL-CKALAQKLSIRTN----DRYYKG-QLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNL 251 (423)
T ss_pred eEEEEeCCCCCChhHH-HHHHHHhheeeec----Cccccc-eEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcE
Confidence 3478899999999973 2333333321111 111111 233333 3356667777777777665544
Q ss_pred EEEEeCCC--------------Ch----------HHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchh
Q 039378 285 SVCVYGGT--------------SK----------QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRM 340 (600)
Q Consensus 285 ~~~~~~g~--------------~~----------~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l 340 (600)
+.++.... .. -.|+..++..++++|-|...|.+. ++.-.+|-||-.
T Consensus 252 VfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~s----------iD~AfVDRADi~ 321 (423)
T KOG0744|consen 252 VFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDS----------IDVAFVDRADIV 321 (423)
T ss_pred EEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHH----------HHHHhhhHhhhe
Confidence 44443221 11 123344566677777766555443 344557778755
Q ss_pred hcCC
Q 039378 341 LDMG 344 (600)
Q Consensus 341 ~~~~ 344 (600)
...|
T Consensus 322 ~yVG 325 (423)
T KOG0744|consen 322 FYVG 325 (423)
T ss_pred eecC
Confidence 4433
No 485
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=84.63 E-value=0.84 Score=50.55 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=34.2
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHH
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDV 273 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~ 273 (600)
.++++.||||||||..+++|.+... +..++|+=|-.++..-....
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~-------------~~S~VV~D~KGE~~~~Tag~ 220 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW-------------GHSSVITDLKGELWALTAGW 220 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC-------------CCCEEEEeCcHHHHHHHHHH
Confidence 5799999999999999999987642 12268888988886544443
No 486
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=84.61 E-value=14 Score=33.64 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=36.5
Q ss_pred cceEEEEEcccchhhcCCCh--HHHHHHHHhcCcCCcEEEEeccCChhHHHHHHH
Q 039378 327 SEVSFVVLDEADRMLDMGFE--EPVRFILSKISLARQMVMFSATWPIEVHKLAEE 379 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~~--~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~ 379 (600)
..+++||+||.-..+..++. ..+..++..-|....+|+..-..|+.+.+++..
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 46899999999998887764 344455555555555666666678777766554
No 487
>PRK08840 replicative DNA helicase; Provisional
Probab=84.59 E-value=12 Score=39.73 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=53.3
Q ss_pred hcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 039378 213 LNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGT 292 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~ 292 (600)
..|.=+++.|.||+|||... +-+...+.... +..++|+..= .-..|+..++..... ++....+..|.
T Consensus 215 ~~g~LiviaarPg~GKTafa-lnia~~~a~~~---------~~~v~~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~~~ 281 (464)
T PRK08840 215 QGSDLIIVAARPSMGKTTFA-MNLCENAAMDQ---------DKPVLIFSLE-MPAEQLMMRMLASLS--RVDQTKIRTGQ 281 (464)
T ss_pred CCCceEEEEeCCCCchHHHH-HHHHHHHHHhC---------CCeEEEEecc-CCHHHHHHHHHHhhC--CCCHHHHhcCC
Confidence 34455778899999999753 33333332211 1225565432 223555555443221 12111112222
Q ss_pred ChHHHHHH-------HhcCCcEEEE-----chHHHHHHHHccCCCccceEEEEEcccchhh
Q 039378 293 SKQPQITA-------LRSGVDIVIG-----TPGRLIDLIEMNVCHLSEVSFVVLDEADRML 341 (600)
Q Consensus 293 ~~~~~~~~-------l~~~~~Iiv~-----Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~ 341 (600)
-....+.. +.....+.|. |+..+...+++-......+++||||=.|.|.
T Consensus 282 l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 282 LDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 22222222 2222345553 3444443332211111247899999888775
No 488
>PRK07004 replicative DNA helicase; Provisional
Probab=84.49 E-value=5.8 Score=42.26 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=18.0
Q ss_pred hcCCcEEEEecCCCCchhHhhHHHHHHH
Q 039378 213 LNGRDFIGIAKTGSGKTIAFGVPAMMHV 240 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~~~lp~l~~~ 240 (600)
..|.=++++|.+|+|||.. ++-+..++
T Consensus 211 ~~g~liviaarpg~GKT~~-al~ia~~~ 237 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAF-SMNIGEYV 237 (460)
T ss_pred CCCceEEEEeCCCCCccHH-HHHHHHHH
Confidence 3445578899999999975 34333333
No 489
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=84.29 E-value=1.9 Score=41.71 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=16.8
Q ss_pred hhcCCcEEEEecCCCCchhH
Q 039378 212 LLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 212 il~~~d~i~~a~TGsGKT~~ 231 (600)
+-.|+.+++.+|.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34678899999999999973
No 490
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=83.94 E-value=4.7 Score=44.75 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=52.8
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-----cccc-CCCCCC
Q 039378 429 RNRVLVFALYQLEADRLENMLRRS-----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-----VAAR-GLDIPD 497 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-----~~~~-Gldi~~ 497 (600)
..++||.|+++.-+.+++..|... ++.+..+||+.+...+...+. +...|+|+|. .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~----~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR----QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 458999999999999988776543 688999999987665544432 4578999994 3333 478888
Q ss_pred cCEEEE
Q 039378 498 VEVVIN 503 (600)
Q Consensus 498 v~~VI~ 503 (600)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888874
No 491
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=83.87 E-value=3 Score=45.54 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=37.4
Q ss_pred eCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcC
Q 039378 289 YGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357 (600)
Q Consensus 289 ~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~ 357 (600)
.||......++-.++ --|=+-||+++.-+.+-.. .=-++++||+|.|...-.++.-..++.-+.
T Consensus 383 LGGvrDEAEIRGHRR--TYIGamPGrIiQ~mkka~~---~NPv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 383 LGGVRDEAEIRGHRR--TYIGAMPGKIIQGMKKAGV---KNPVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred cCccccHHHhccccc--cccccCChHHHHHHHHhCC---cCCeEEeechhhccCCCCCChHHHHHhhcC
Confidence 345544444333222 2333559999988765321 123789999999987655555555555553
No 492
>PRK08506 replicative DNA helicase; Provisional
Probab=83.87 E-value=8.3 Score=41.23 Aligned_cols=113 Identities=15% Similarity=0.120 Sum_probs=54.5
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTS 293 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~ 293 (600)
.|.=+++.|.||+|||.. ++-+..++... +..+++++. -.-..|+..++...... +....+..|.-
T Consensus 191 ~G~LivIaarpg~GKT~f-al~ia~~~~~~----------g~~V~~fSl-EMs~~ql~~Rlla~~s~--v~~~~i~~~~l 256 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTL-CLNMALKALNQ----------DKGVAFFSL-EMPAEQLMLRMLSAKTS--IPLQNLRTGDL 256 (472)
T ss_pred CCceEEEEcCCCCChHHH-HHHHHHHHHhc----------CCcEEEEeC-cCCHHHHHHHHHHHhcC--CCHHHHhcCCC
Confidence 444578889999999975 34344444332 222566643 23345555554432221 21111111222
Q ss_pred hHHHHH-------HHhcCCcEEEE-----chHHHHHHHHccCCCccceEEEEEcccchhh
Q 039378 294 KQPQIT-------ALRSGVDIVIG-----TPGRLIDLIEMNVCHLSEVSFVVLDEADRML 341 (600)
Q Consensus 294 ~~~~~~-------~l~~~~~Iiv~-----Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~ 341 (600)
....+. .+.. ..+.|- |+..+...+++-......+++||||=.+.|.
T Consensus 257 ~~~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 257 DDDEWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred CHHHHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 222221 1222 345442 4555554443211112257899999988775
No 493
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.85 E-value=5.9 Score=42.92 Aligned_cols=43 Identities=14% Similarity=0.284 Sum_probs=26.1
Q ss_pred EEEEEcccchhhcCC-------ChHHHHHHHHhcC---cCCcEEEEeccCChh
Q 039378 330 SFVVLDEADRMLDMG-------FEEPVRFILSKIS---LARQMVMFSATWPIE 372 (600)
Q Consensus 330 ~~lViDEah~l~~~~-------~~~~~~~il~~~~---~~~q~i~~SATl~~~ 372 (600)
.+|.|||+|.+...- -...+..++..+. ....++++-||-.++
T Consensus 529 ~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd 581 (693)
T KOG0730|consen 529 CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD 581 (693)
T ss_pred eEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChh
Confidence 789999999876421 1223334444332 335688899995443
No 494
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=83.79 E-value=24 Score=39.70 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=13.8
Q ss_pred HHHhhhccCCCCc-cEEEEEEcC
Q 039378 514 VHRIGRTGRAGKK-GVSHTFFTN 535 (600)
Q Consensus 514 ~qr~GR~gR~g~~-g~~~~~~~~ 535 (600)
-|.+||+-|.-+. |.++ +++.
T Consensus 700 NQAiGRviRHR~D~Gav~-l~D~ 721 (945)
T KOG1132|consen 700 NQAIGRVIRHRNDYGAVI-LCDD 721 (945)
T ss_pred HHHHHHHHhhhcccceee-Eeec
Confidence 4899999997554 4444 5543
No 495
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=83.78 E-value=3.9 Score=41.42 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=18.3
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHH
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVL 241 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~ 241 (600)
...+++.|++|+|||.. +-++..++
T Consensus 25 ~g~vli~G~~G~gKttl--~r~~~~~~ 49 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTA--VRALAALL 49 (337)
T ss_pred CCeEEEEcCCCCCHHHH--HHHHHHhh
Confidence 45799999999999984 33444444
No 496
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=83.76 E-value=1.7 Score=38.30 Aligned_cols=114 Identities=21% Similarity=0.207 Sum_probs=54.9
Q ss_pred cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHH
Q 039378 217 DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQP 296 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 296 (600)
.+.+.+++|+|||.. +.-+...+..... +. .-|++|- +++-+...|++++.+..|....-
T Consensus 7 ki~ITG~PGvGKtTl-~~ki~e~L~~~g~-kv--------gGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~~l 66 (179)
T COG1618 7 KIFITGRPGVGKTTL-VLKIAEKLREKGY-KV--------GGFITPE----------VREGGKRIGFKIVDLATGEEGIL 66 (179)
T ss_pred EEEEeCCCCccHHHH-HHHHHHHHHhcCc-ee--------eeEEeee----------eecCCeEeeeEEEEccCCceEEE
Confidence 578999999999986 3444444443321 11 2455663 33444455666666553321100
Q ss_pred HHHHHhcCCcEEEEchHHHHHHHHcc-----CCCccceEEEEEcccchhhcC--CChHHHHHHH
Q 039378 297 QITALRSGVDIVIGTPGRLIDLIEMN-----VCHLSEVSFVVLDEADRMLDM--GFEEPVRFIL 353 (600)
Q Consensus 297 ~~~~l~~~~~Iiv~Tp~~l~~~l~~~-----~~~l~~~~~lViDEah~l~~~--~~~~~~~~il 353 (600)
.... ....-|+-|+...+.+..- .-.+..-+++||||.--|-.. .|...+..++
T Consensus 67 a~~~---~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl 127 (179)
T COG1618 67 ARVG---FSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVL 127 (179)
T ss_pred EEcC---CCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHh
Confidence 0000 0112222232222222110 001334689999999877532 3445555544
No 497
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=83.72 E-value=2.4 Score=40.47 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=25.8
Q ss_pred eEEEEEcccchhhcCCChHHHHHHHHhcCcCC
Q 039378 329 VSFVVLDEADRMLDMGFEEPVRFILSKISLAR 360 (600)
Q Consensus 329 ~~~lViDEah~l~~~~~~~~~~~il~~~~~~~ 360 (600)
-+++|+||.=..++......+..++..+....
T Consensus 157 P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~ 188 (235)
T COG1122 157 PEILLLDEPTAGLDPKGRRELLELLKKLKEEG 188 (235)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 58999999999999876777777777776654
No 498
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=83.66 E-value=1.5 Score=43.16 Aligned_cols=41 Identities=27% Similarity=0.261 Sum_probs=26.0
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEec
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSA 367 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SA 367 (600)
+.+-+++|+||.-.-++......+..++......+ ++++.+
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~-tii~is 194 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC-TVILSE 194 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCC-EEEEEE
Confidence 44568899999888777665666666666554433 444443
No 499
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=83.61 E-value=2.5 Score=39.50 Aligned_cols=43 Identities=21% Similarity=0.202 Sum_probs=29.4
Q ss_pred ccceEEEEEcccchhhcCCChH-HHHHHHHhcCc--CCcEEEEecc
Q 039378 326 LSEVSFVVLDEADRMLDMGFEE-PVRFILSKISL--ARQMVMFSAT 368 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~-~~~~il~~~~~--~~q~i~~SAT 368 (600)
..+.+++++||.-.-++..... .+..++..+.. ..++++.|--
T Consensus 137 ~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 137 GSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred ccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 3467899999999888875556 67777766654 3455555543
No 500
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=83.56 E-value=7.9 Score=39.26 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=24.0
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEecc
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSAT 368 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 368 (600)
....+++||||+|+|.... ...+...+...+....+|+ .++
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il-~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAIL-LTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEE-EeC
Confidence 4568999999999986532 2233344444444444444 444
Done!