Query 039378
Match_columns 600
No_of_seqs 438 out of 3422
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 15:20:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2E-64 6.8E-69 532.5 45.6 378 176-562 52-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 2.3E-59 7.9E-64 493.3 44.0 387 176-566 11-413 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 6.4E-58 2.2E-62 481.1 35.5 367 178-557 35-404 (410)
4 3eiq_A Eukaryotic initiation f 100.0 1.1E-56 3.8E-61 472.3 30.7 373 177-562 37-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 8.5E-56 2.9E-60 463.4 36.9 369 178-560 19-389 (400)
6 1xti_A Probable ATP-dependent 100.0 3.4E-55 1.2E-59 457.4 37.6 367 180-558 8-380 (391)
7 1hv8_A Putative ATP-dependent 100.0 2.2E-53 7.6E-58 439.6 39.7 352 179-550 5-359 (367)
8 3sqw_A ATP-dependent RNA helic 100.0 8.9E-54 3E-58 468.1 37.8 365 179-548 19-410 (579)
9 1fuu_A Yeast initiation factor 100.0 9.8E-56 3.3E-60 462.0 21.1 371 177-561 18-391 (394)
10 3fht_A ATP-dependent RNA helic 100.0 1.2E-53 4E-58 449.0 36.4 364 176-555 21-399 (412)
11 3i5x_A ATP-dependent RNA helic 100.0 2.8E-53 9.4E-58 463.9 37.8 358 186-548 78-461 (563)
12 3fmp_B ATP-dependent RNA helic 100.0 2.1E-55 7.2E-60 470.9 20.2 360 177-552 89-463 (479)
13 3pey_A ATP-dependent RNA helic 100.0 3.5E-53 1.2E-57 442.6 36.1 354 178-548 3-369 (395)
14 2z0m_A 337AA long hypothetical 100.0 3E-51 1E-55 418.6 37.4 333 187-549 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 5.3E-51 1.8E-55 442.1 33.2 341 182-545 23-383 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 1.1E-49 3.7E-54 427.8 33.8 341 179-546 1-353 (523)
17 3fho_A ATP-dependent RNA helic 100.0 5.1E-51 1.7E-55 438.3 19.1 363 178-557 117-492 (508)
18 3oiy_A Reverse gyrase helicase 100.0 1.4E-48 4.9E-53 410.3 29.6 317 197-549 19-376 (414)
19 3l9o_A ATP-dependent RNA helic 100.0 5.2E-49 1.8E-53 452.3 27.1 330 181-536 163-597 (1108)
20 4a2p_A RIG-I, retinoic acid in 100.0 7.1E-47 2.4E-51 413.1 24.4 334 198-539 5-511 (556)
21 1tf5_A Preprotein translocase 100.0 3.1E-46 1.1E-50 404.0 28.6 336 197-551 81-564 (844)
22 3tbk_A RIG-I helicase domain; 100.0 2.9E-46 9.9E-51 408.2 25.1 334 200-544 4-515 (555)
23 2zj8_A DNA helicase, putative 100.0 1.1E-45 3.6E-50 414.1 28.2 330 181-537 2-388 (720)
24 2ykg_A Probable ATP-dependent 100.0 3E-46 1E-50 418.8 21.6 339 197-544 10-524 (696)
25 2va8_A SSO2462, SKI2-type heli 100.0 4.7E-45 1.6E-49 409.1 31.2 335 180-538 8-410 (715)
26 4a2q_A RIG-I, retinoic acid in 100.0 1.6E-45 5.4E-50 416.6 26.2 335 197-539 245-752 (797)
27 2p6r_A Afuhel308 helicase; pro 100.0 2.4E-45 8.4E-50 410.0 24.1 334 181-538 2-390 (702)
28 4ddu_A Reverse gyrase; topoiso 100.0 1.7E-44 5.9E-49 414.8 30.7 320 197-550 76-504 (1104)
29 2xgj_A ATP-dependent RNA helic 100.0 9.3E-44 3.2E-48 405.4 35.6 313 197-536 84-499 (1010)
30 1wp9_A ATP-dependent RNA helic 100.0 1.1E-43 3.6E-48 381.3 33.2 326 200-539 9-478 (494)
31 2fsf_A Preprotein translocase 100.0 6.4E-44 2.2E-48 384.7 25.5 324 197-540 72-587 (853)
32 4a2w_A RIG-I, retinoic acid in 100.0 2.6E-44 8.8E-49 410.7 23.4 334 197-539 245-752 (936)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 1.2E-44 4E-49 416.7 19.3 318 197-550 55-468 (1054)
34 1nkt_A Preprotein translocase 100.0 7.2E-43 2.5E-47 376.7 31.3 337 197-552 109-637 (922)
35 4gl2_A Interferon-induced heli 100.0 6.9E-44 2.4E-48 399.8 21.1 326 200-535 7-517 (699)
36 4a4z_A Antiviral helicase SKI2 100.0 4.1E-42 1.4E-46 391.9 29.5 312 197-534 37-490 (997)
37 4f92_B U5 small nuclear ribonu 100.0 1.8E-41 6E-46 402.8 32.6 349 187-543 66-480 (1724)
38 2whx_A Serine protease/ntpase/ 100.0 2.2E-42 7.4E-47 375.7 18.4 325 185-560 155-505 (618)
39 2oca_A DAR protein, ATP-depend 100.0 5.5E-42 1.9E-46 369.9 21.4 314 198-534 111-453 (510)
40 4f92_B U5 small nuclear ribonu 100.0 2.2E-40 7.4E-45 393.5 35.5 340 187-544 911-1316(1724)
41 1gm5_A RECG; helicase, replica 100.0 1.4E-41 4.8E-46 375.6 22.9 313 197-539 366-700 (780)
42 2jlq_A Serine protease subunit 100.0 1.2E-41 4.1E-46 359.4 20.5 312 197-560 1-338 (451)
43 2eyq_A TRCF, transcription-rep 100.0 5.3E-40 1.8E-44 380.0 34.4 322 185-537 586-923 (1151)
44 1yks_A Genome polyprotein [con 100.0 2.5E-41 8.7E-46 355.3 9.4 290 211-560 4-326 (440)
45 2wv9_A Flavivirin protease NS2 100.0 4.1E-40 1.4E-44 359.9 16.4 307 200-557 215-557 (673)
46 2xau_A PRE-mRNA-splicing facto 100.0 3.3E-39 1.1E-43 359.3 23.9 340 174-538 66-445 (773)
47 3o8b_A HCV NS3 protease/helica 100.0 1.8E-39 6.1E-44 349.0 18.7 277 202-540 219-518 (666)
48 2fwr_A DNA repair protein RAD2 100.0 3.5E-39 1.2E-43 344.6 19.2 293 200-536 93-454 (472)
49 2z83_A Helicase/nucleoside tri 100.0 1.6E-38 5.4E-43 336.1 17.5 276 206-536 12-313 (459)
50 2v6i_A RNA helicase; membrane, 100.0 3.4E-37 1.2E-41 323.3 21.6 269 214-533 1-288 (431)
51 3fe2_A Probable ATP-dependent 100.0 3.3E-36 1.1E-40 291.8 23.5 214 176-393 25-240 (242)
52 3h1t_A Type I site-specific re 100.0 7.3E-37 2.5E-41 335.3 20.4 308 200-525 178-545 (590)
53 1z63_A Helicase of the SNF2/RA 100.0 1.5E-35 5.1E-40 318.8 27.4 323 199-549 36-464 (500)
54 3dmq_A RNA polymerase-associat 100.0 7.2E-36 2.5E-40 341.4 24.8 335 199-550 152-627 (968)
55 3rc3_A ATP-dependent RNA helic 100.0 3.2E-35 1.1E-39 320.1 26.0 294 188-534 130-443 (677)
56 3fmo_B ATP-dependent RNA helic 100.0 2.1E-35 7.1E-40 294.4 22.3 204 176-391 88-298 (300)
57 3jux_A Protein translocase sub 100.0 6.9E-34 2.4E-38 300.2 32.9 331 200-552 75-607 (822)
58 3ber_A Probable ATP-dependent 100.0 1.3E-34 4.4E-39 281.2 24.0 207 176-391 39-248 (249)
59 3mwy_W Chromo domain-containin 100.0 5.6E-34 1.9E-38 321.3 32.2 320 199-536 235-684 (800)
60 3iuy_A Probable ATP-dependent 100.0 8.8E-35 3E-39 279.3 21.9 211 175-389 14-227 (228)
61 1z3i_X Similar to RAD54-like; 100.0 1.7E-33 5.8E-38 309.6 34.8 326 200-536 55-528 (644)
62 1wrb_A DJVLGB; RNA helicase, D 100.0 2.1E-34 7.3E-39 281.1 22.9 217 177-394 20-243 (253)
63 1vec_A ATP-dependent RNA helic 100.0 6.7E-34 2.3E-38 268.7 24.0 200 180-388 3-205 (206)
64 3bor_A Human initiation factor 100.0 1.9E-34 6.3E-39 278.4 20.0 207 176-391 26-235 (237)
65 2pl3_A Probable ATP-dependent 100.0 1.4E-33 4.8E-38 272.4 25.3 210 176-391 21-233 (236)
66 1q0u_A Bstdead; DEAD protein, 100.0 1.8E-34 6.2E-39 275.2 18.8 205 179-392 3-213 (219)
67 2oxc_A Probable ATP-dependent 100.0 8.4E-34 2.9E-38 272.6 22.0 204 176-389 20-227 (230)
68 3ly5_A ATP-dependent RNA helic 100.0 9.9E-34 3.4E-38 277.2 22.2 204 180-387 52-260 (262)
69 1qde_A EIF4A, translation init 100.0 1.5E-33 5E-38 270.0 21.6 206 177-392 11-218 (224)
70 2gxq_A Heat resistant RNA depe 100.0 3.3E-33 1.1E-37 264.1 23.0 202 181-390 2-205 (207)
71 1t6n_A Probable ATP-dependent 100.0 1.7E-32 5.7E-37 261.9 20.5 202 179-389 13-219 (220)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 6.4E-32 2.2E-36 306.0 25.3 315 200-535 271-708 (1038)
73 3dkp_A Probable ATP-dependent 100.0 2.1E-32 7E-37 265.8 17.2 210 176-393 21-243 (245)
74 2ipc_A Preprotein translocase 100.0 7.9E-29 2.7E-33 266.5 31.9 319 197-539 77-701 (997)
75 2p6n_A ATP-dependent RNA helic 100.0 3.5E-29 1.2E-33 231.8 18.0 179 380-564 11-190 (191)
76 1c4o_A DNA nucleotide excision 100.0 1.2E-27 4.2E-32 262.6 29.4 176 359-546 380-560 (664)
77 2jgn_A DBX, DDX3, ATP-dependen 100.0 1.5E-28 5.2E-33 226.6 18.8 166 397-564 16-181 (185)
78 2d7d_A Uvrabc system protein B 100.0 1.1E-26 3.9E-31 254.8 26.6 177 358-546 385-566 (661)
79 2hjv_A ATP-dependent RNA helic 99.9 5.8E-27 2E-31 211.8 18.3 149 398-549 7-155 (163)
80 1fuk_A Eukaryotic initiation f 99.9 3E-27 1E-31 214.2 15.0 157 400-559 3-160 (165)
81 1t5i_A C_terminal domain of A 99.9 4E-27 1.4E-31 214.6 15.1 157 399-558 4-161 (172)
82 2rb4_A ATP-dependent RNA helic 99.9 2.3E-26 7.9E-31 210.6 15.7 148 399-549 6-160 (175)
83 3eaq_A Heat resistant RNA depe 99.9 5.2E-26 1.8E-30 214.6 16.8 146 402-550 7-152 (212)
84 3i32_A Heat resistant RNA depe 99.9 2.8E-25 9.6E-30 219.3 17.1 147 401-550 3-149 (300)
85 2yjt_D ATP-dependent RNA helic 99.8 3.4E-26 1.2E-30 208.3 0.0 145 402-549 5-150 (170)
86 2vl7_A XPD; helicase, unknown 99.9 6.1E-23 2.1E-27 220.9 23.8 275 197-508 5-463 (540)
87 3b6e_A Interferon-induced heli 99.9 5.4E-24 1.9E-28 202.1 12.3 166 197-368 30-216 (216)
88 3crv_A XPD/RAD3 related DNA he 99.9 4E-21 1.4E-25 207.6 30.6 312 200-535 3-530 (551)
89 1rif_A DAR protein, DNA helica 99.9 3.6E-22 1.2E-26 197.5 13.5 156 200-375 113-268 (282)
90 3llm_A ATP-dependent RNA helic 99.9 1.7E-21 5.7E-26 187.2 15.5 169 200-386 61-232 (235)
91 1z5z_A Helicase of the SNF2/RA 99.8 2.8E-20 9.5E-25 181.4 13.2 126 410-536 94-224 (271)
92 4a15_A XPD helicase, ATP-depen 99.8 4.9E-19 1.7E-23 192.6 20.1 317 200-535 3-583 (620)
93 2fz4_A DNA repair protein RAD2 99.8 6E-19 2.1E-23 169.1 12.8 139 199-372 92-231 (237)
94 1w36_D RECD, exodeoxyribonucle 98.8 4.4E-09 1.5E-13 114.3 7.4 146 202-368 151-298 (608)
95 3hgt_A HDA1 complex subunit 3; 98.5 1E-06 3.5E-11 85.7 13.3 124 410-539 107-240 (328)
96 3lfu_A DNA helicase II; SF1 he 98.3 4.3E-05 1.5E-09 84.1 21.9 71 199-278 8-78 (647)
97 4b3f_X DNA-binding protein smu 98.3 1.4E-06 4.8E-11 95.7 8.5 68 200-278 189-257 (646)
98 2gk6_A Regulator of nonsense t 98.2 1.4E-05 4.7E-10 87.2 14.9 70 198-277 178-247 (624)
99 3e1s_A Exodeoxyribonuclease V, 98.2 5.4E-06 1.8E-10 89.1 10.6 122 200-367 189-314 (574)
100 2xzl_A ATP-dependent helicase 98.1 1.9E-05 6.4E-10 88.1 14.6 71 198-278 358-428 (802)
101 3upu_A ATP-dependent DNA helic 98.1 8.3E-06 2.8E-10 85.6 10.9 68 197-274 22-94 (459)
102 2wjy_A Regulator of nonsense t 98.1 2.8E-05 9.5E-10 86.7 14.1 70 199-278 355-424 (800)
103 1pjr_A PCRA; DNA repair, DNA r 97.5 0.01 3.5E-07 65.8 22.8 71 199-278 10-80 (724)
104 3vkw_A Replicase large subunit 97.3 0.0007 2.4E-08 69.2 9.6 106 218-368 164-269 (446)
105 2o0j_A Terminase, DNA packagin 97.1 0.0019 6.4E-08 65.2 10.4 70 200-278 163-232 (385)
106 3cpe_A Terminase, DNA packagin 96.9 0.007 2.4E-07 65.3 13.3 121 200-342 163-287 (592)
107 3ec2_A DNA replication protein 96.8 0.0043 1.5E-07 55.6 9.1 30 202-231 16-54 (180)
108 2b8t_A Thymidine kinase; deoxy 96.8 0.0027 9.3E-08 58.9 7.4 90 215-340 12-101 (223)
109 1xx6_A Thymidine kinase; NESG, 96.7 0.0034 1.2E-07 56.8 7.7 39 215-264 8-46 (191)
110 2orw_A Thymidine kinase; TMTK, 96.7 0.0027 9.2E-08 57.3 6.6 39 215-264 3-41 (184)
111 2j9r_A Thymidine kinase; TK1, 96.3 0.0047 1.6E-07 56.5 5.8 36 218-264 31-66 (214)
112 1uaa_A REP helicase, protein ( 96.3 0.011 3.8E-07 64.9 9.8 71 200-279 2-72 (673)
113 2kjq_A DNAA-related protein; s 96.3 0.0026 8.8E-08 55.2 3.7 18 214-231 35-52 (149)
114 2orv_A Thymidine kinase; TP4A 96.2 0.011 3.6E-07 54.7 7.6 39 215-264 19-57 (234)
115 1l8q_A Chromosomal replication 96.1 0.022 7.6E-07 56.3 10.3 17 215-231 37-53 (324)
116 1w4r_A Thymidine kinase; type 96.1 0.0089 3E-07 53.7 6.2 37 216-263 21-57 (195)
117 3e2i_A Thymidine kinase; Zn-bi 95.8 0.011 3.7E-07 54.0 5.5 38 216-264 29-66 (219)
118 2zpa_A Uncharacterized protein 95.7 0.021 7.1E-07 61.4 8.2 113 200-370 175-289 (671)
119 3te6_A Regulatory protein SIR3 95.6 0.055 1.9E-06 53.0 10.1 26 215-241 45-70 (318)
120 2z4s_A Chromosomal replication 95.5 0.054 1.9E-06 56.0 10.4 17 215-231 130-146 (440)
121 1d2n_A N-ethylmaleimide-sensit 95.3 0.11 3.6E-06 49.8 11.0 16 216-231 65-80 (272)
122 2v1u_A Cell division control p 95.2 0.096 3.3E-06 52.8 10.9 17 215-231 44-60 (387)
123 3u4q_A ATP-dependent helicase/ 95.1 0.033 1.1E-06 65.5 8.0 71 200-277 10-80 (1232)
124 2w58_A DNAI, primosome compone 95.0 0.1 3.5E-06 47.3 9.5 16 216-231 55-70 (202)
125 3kl4_A SRP54, signal recogniti 95.0 0.071 2.4E-06 54.6 9.0 55 327-381 178-235 (433)
126 1a5t_A Delta prime, HOLB; zinc 94.7 0.093 3.2E-06 52.0 8.9 32 201-232 3-41 (334)
127 2chg_A Replication factor C sm 94.6 0.14 4.9E-06 46.7 9.7 39 327-366 101-139 (226)
128 3bos_A Putative DNA replicatio 94.6 0.041 1.4E-06 51.4 5.8 18 214-231 51-68 (242)
129 2p65_A Hypothetical protein PF 94.2 0.17 5.9E-06 44.7 8.9 17 215-231 43-59 (187)
130 2qgz_A Helicase loader, putati 94.2 0.13 4.5E-06 50.3 8.7 17 215-231 152-168 (308)
131 1gm5_A RECG; helicase, replica 94.1 0.14 4.7E-06 56.7 9.5 75 429-503 417-496 (780)
132 2qby_B CDC6 homolog 3, cell di 93.8 0.22 7.4E-06 50.2 9.8 16 216-231 46-61 (384)
133 3eie_A Vacuolar protein sortin 93.5 0.4 1.4E-05 47.1 10.8 16 216-231 52-67 (322)
134 3syl_A Protein CBBX; photosynt 93.5 0.076 2.6E-06 51.9 5.5 17 215-231 67-83 (309)
135 2qby_A CDC6 homolog 1, cell di 93.2 0.28 9.7E-06 49.2 9.5 17 215-231 45-61 (386)
136 1jbk_A CLPB protein; beta barr 93.0 0.49 1.7E-05 41.8 9.8 16 216-231 44-59 (195)
137 1sxj_E Activator 1 40 kDa subu 93.0 0.14 4.8E-06 51.0 6.7 42 326-368 132-173 (354)
138 3u61_B DNA polymerase accessor 93.0 0.097 3.3E-06 51.6 5.4 40 327-368 104-144 (324)
139 3cf0_A Transitional endoplasmi 92.9 0.42 1.4E-05 46.4 9.8 18 214-231 48-65 (301)
140 1fnn_A CDC6P, cell division co 92.8 0.21 7.1E-06 50.4 7.8 15 217-231 46-60 (389)
141 1sxj_D Activator 1 41 kDa subu 92.7 0.4 1.4E-05 47.5 9.7 39 327-366 132-170 (353)
142 3dm5_A SRP54, signal recogniti 92.5 0.99 3.4E-05 46.1 12.1 54 328-381 182-236 (443)
143 4b4t_M 26S protease regulatory 92.5 0.15 5.1E-06 52.1 6.0 52 177-231 175-231 (434)
144 1iqp_A RFCS; clamp loader, ext 92.4 0.37 1.3E-05 47.2 8.7 42 327-370 109-150 (327)
145 3h4m_A Proteasome-activating n 92.3 0.4 1.4E-05 46.0 8.7 18 214-231 50-67 (285)
146 3pfi_A Holliday junction ATP-d 91.8 0.31 1.1E-05 48.2 7.4 16 216-231 56-71 (338)
147 1njg_A DNA polymerase III subu 91.8 1.5 5.3E-05 40.1 11.9 15 217-231 47-61 (250)
148 2qp9_X Vacuolar protein sortin 91.4 0.3 1E-05 48.7 6.8 16 216-231 85-100 (355)
149 3oiy_A Reverse gyrase helicase 90.5 0.67 2.3E-05 47.2 8.6 76 428-503 63-145 (414)
150 3pvs_A Replication-associated 90.5 0.45 1.5E-05 49.1 7.2 16 216-231 51-66 (447)
151 1xwi_A SKD1 protein; VPS4B, AA 90.3 0.28 9.6E-06 48.2 5.3 16 216-231 46-61 (322)
152 4b4t_J 26S protease regulatory 90.3 0.32 1.1E-05 49.0 5.7 50 179-231 144-198 (405)
153 3vfd_A Spastin; ATPase, microt 90.2 0.65 2.2E-05 46.9 8.0 17 215-231 148-164 (389)
154 2r6a_A DNAB helicase, replicat 90.0 1.3 4.5E-05 45.7 10.4 27 213-240 201-227 (454)
155 3t15_A Ribulose bisphosphate c 89.8 0.42 1.4E-05 46.2 6.1 16 216-231 37-52 (293)
156 2px0_A Flagellar biosynthesis 89.7 1.7 5.7E-05 42.0 10.2 18 214-231 104-121 (296)
157 1jr3_A DNA polymerase III subu 89.7 1.2 4.2E-05 44.3 9.6 15 217-231 40-54 (373)
158 1hqc_A RUVB; extended AAA-ATPa 89.6 0.37 1.3E-05 47.1 5.7 16 216-231 39-54 (324)
159 3hu3_A Transitional endoplasmi 89.5 0.49 1.7E-05 49.4 6.6 17 215-231 238-254 (489)
160 3hjh_A Transcription-repair-co 89.5 1.2 4.2E-05 46.1 9.6 52 214-279 13-64 (483)
161 1sxj_C Activator 1 40 kDa subu 89.3 1 3.4E-05 44.5 8.6 38 327-365 109-146 (340)
162 4ddu_A Reverse gyrase; topoiso 89.2 0.78 2.7E-05 53.0 8.5 76 428-503 120-202 (1104)
163 1sxj_B Activator 1 37 kDa subu 89.1 0.53 1.8E-05 45.9 6.3 15 217-231 44-58 (323)
164 1t6n_A Probable ATP-dependent 89.1 1.7 5.9E-05 39.5 9.5 71 430-503 83-164 (220)
165 4b4t_L 26S protease subunit RP 88.9 0.37 1.3E-05 49.3 5.0 50 179-231 177-231 (437)
166 4b4t_H 26S protease regulatory 88.9 0.48 1.6E-05 48.5 5.8 49 180-231 206-259 (467)
167 2q6t_A DNAB replication FORK h 88.9 1.4 4.9E-05 45.3 9.6 115 214-343 199-325 (444)
168 2zan_A Vacuolar protein sortin 88.9 0.4 1.4E-05 49.5 5.4 17 215-231 167-183 (444)
169 1g5t_A COB(I)alamin adenosyltr 88.6 4.4 0.00015 36.2 11.3 51 326-376 118-170 (196)
170 1w5s_A Origin recognition comp 88.6 2.3 7.9E-05 42.9 10.9 16 216-231 51-68 (412)
171 4b4t_K 26S protease regulatory 88.4 0.53 1.8E-05 48.0 5.7 50 179-231 168-222 (428)
172 2eyq_A TRCF, transcription-rep 88.4 1.9 6.6E-05 50.1 11.1 76 428-503 651-731 (1151)
173 2hjv_A ATP-dependent RNA helic 87.9 3.1 0.00011 35.9 9.8 70 256-335 37-110 (163)
174 2rb4_A ATP-dependent RNA helic 87.6 3 0.0001 36.4 9.7 71 254-334 34-108 (175)
175 4fcw_A Chaperone protein CLPB; 87.3 1.2 4.1E-05 43.1 7.6 15 217-231 49-63 (311)
176 2ehv_A Hypothetical protein PH 87.2 0.66 2.2E-05 43.3 5.4 19 213-231 28-46 (251)
177 2gno_A DNA polymerase III, gam 87.2 1.2 4.2E-05 43.2 7.4 43 326-370 80-122 (305)
178 3m6a_A ATP-dependent protease 86.9 0.64 2.2E-05 49.3 5.6 18 214-231 107-124 (543)
179 1nlf_A Regulatory protein REPA 86.4 2.9 0.0001 39.7 9.6 21 212-232 27-47 (279)
180 2p6n_A ATP-dependent RNA helic 86.2 3.5 0.00012 36.7 9.4 70 255-334 55-128 (191)
181 3ber_A Probable ATP-dependent 86.2 4 0.00014 38.0 10.2 83 417-503 98-192 (249)
182 1fuk_A Eukaryotic initiation f 86.1 4.6 0.00016 34.8 9.9 72 255-336 31-106 (165)
183 3co5_A Putative two-component 85.8 0.54 1.9E-05 39.8 3.6 21 211-231 23-43 (143)
184 2chq_A Replication factor C sm 85.7 0.45 1.6E-05 46.3 3.5 15 217-231 40-54 (319)
185 3eaq_A Heat resistant RNA depe 85.2 4.1 0.00014 37.0 9.5 69 256-334 33-105 (212)
186 2l82_A Designed protein OR32; 85.2 8 0.00027 30.0 9.3 49 432-480 5-53 (162)
187 1sxj_A Activator 1 95 kDa subu 84.8 1.2 4.3E-05 46.7 6.5 41 327-369 147-189 (516)
188 3fe2_A Probable ATP-dependent 84.6 4.5 0.00015 37.4 9.8 71 429-503 102-182 (242)
189 3n70_A Transport activator; si 84.6 0.6 2E-05 39.6 3.2 20 212-231 21-40 (145)
190 2cvh_A DNA repair and recombin 83.9 3.9 0.00013 36.9 8.9 18 214-231 19-36 (220)
191 4a1f_A DNAB helicase, replicat 83.6 1.1 3.9E-05 44.0 5.2 28 213-241 44-71 (338)
192 3e70_C DPA, signal recognition 83.4 2.7 9.4E-05 41.1 7.9 54 328-381 211-265 (328)
193 3cmu_A Protein RECA, recombina 83.0 1.6 5.6E-05 52.8 7.0 19 214-232 1426-1444(2050)
194 1e9r_A Conjugal transfer prote 82.8 1.1 3.8E-05 46.0 5.0 44 214-268 52-95 (437)
195 2pl3_A Probable ATP-dependent 82.6 4 0.00014 37.5 8.4 71 428-503 96-177 (236)
196 1oyw_A RECQ helicase, ATP-depe 82.5 2.3 7.8E-05 44.8 7.4 74 429-502 65-144 (523)
197 2z43_A DNA repair and recombin 82.3 2.6 8.8E-05 41.2 7.2 18 214-231 106-123 (324)
198 3io5_A Recombination and repai 82.1 2.2 7.4E-05 41.4 6.3 90 217-341 30-124 (333)
199 1xti_A Probable ATP-dependent 81.8 5.6 0.00019 39.6 9.8 72 429-503 76-158 (391)
200 1qvr_A CLPB protein; coiled co 81.5 2.1 7.1E-05 48.2 7.0 16 216-231 192-207 (854)
201 1t5i_A C_terminal domain of A 81.4 7.2 0.00024 33.9 9.2 71 255-335 32-106 (172)
202 2v1x_A ATP-dependent DNA helic 80.8 2.2 7.6E-05 45.6 6.6 59 429-487 84-144 (591)
203 3pxi_A Negative regulator of g 80.7 2.2 7.4E-05 47.3 6.7 15 217-231 523-537 (758)
204 3cf2_A TER ATPase, transitiona 80.5 2.4 8.1E-05 46.9 6.8 16 216-231 512-527 (806)
205 2oxc_A Probable ATP-dependent 80.2 3.1 0.00011 38.2 6.7 71 428-503 91-172 (230)
206 2fna_A Conserved hypothetical 79.2 33 0.0011 33.2 14.4 16 216-231 31-46 (357)
207 3iuy_A Probable ATP-dependent 79.1 5.5 0.00019 36.3 8.0 72 428-503 93-173 (228)
208 1r6b_X CLPA protein; AAA+, N-t 78.9 5.4 0.00019 44.1 9.2 17 215-231 207-223 (758)
209 1ls1_A Signal recognition part 78.7 13 0.00044 35.6 10.7 18 214-231 97-114 (295)
210 2l8b_A Protein TRAI, DNA helic 78.5 1.9 6.6E-05 37.8 4.2 61 202-272 36-98 (189)
211 3cf2_A TER ATPase, transitiona 78.0 2 7E-05 47.4 5.2 16 216-231 239-254 (806)
212 3jvv_A Twitching mobility prot 78.0 1.9 6.5E-05 42.8 4.6 18 214-231 122-139 (356)
213 3ly5_A ATP-dependent RNA helic 77.9 10 0.00035 35.4 9.7 72 428-503 125-207 (262)
214 2jgn_A DBX, DDX3, ATP-dependen 77.7 4.3 0.00015 35.8 6.6 71 254-334 46-120 (185)
215 3bor_A Human initiation factor 77.6 5 0.00017 37.0 7.2 72 429-503 98-179 (237)
216 1wp9_A ATP-dependent RNA helic 77.5 6.5 0.00022 40.2 8.9 72 427-503 50-131 (494)
217 2dr3_A UPF0273 protein PH0284; 77.4 2.1 7.3E-05 39.5 4.7 52 214-277 22-73 (247)
218 1p9r_A General secretion pathw 77.4 3.2 0.00011 42.1 6.2 27 205-231 155-183 (418)
219 2gxq_A Heat resistant RNA depe 77.1 6.1 0.00021 35.2 7.6 72 428-503 71-150 (207)
220 2eyu_A Twitching motility prot 77.1 1.3 4.5E-05 41.8 3.1 20 212-231 22-41 (261)
221 2i4i_A ATP-dependent RNA helic 75.8 12 0.00042 37.4 10.3 71 254-334 276-350 (417)
222 2oap_1 GSPE-2, type II secreti 75.7 2.3 7.7E-05 44.6 4.6 31 201-231 245-276 (511)
223 1vec_A ATP-dependent RNA helic 75.4 7.4 0.00025 34.6 7.6 71 429-503 71-152 (206)
224 2i1q_A DNA repair and recombin 74.8 3.5 0.00012 40.2 5.5 18 214-231 97-114 (322)
225 3b85_A Phosphate starvation-in 74.5 2.8 9.6E-05 38.0 4.4 29 203-231 10-38 (208)
226 3u4q_B ATP-dependent helicase/ 74.3 5.6 0.00019 46.4 8.0 51 219-278 5-55 (1166)
227 1lvg_A Guanylate kinase, GMP k 74.2 1.9 6.6E-05 38.7 3.2 18 214-231 3-20 (198)
228 2yhs_A FTSY, cell division pro 73.9 6 0.00021 40.9 7.1 24 217-242 295-318 (503)
229 2zts_A Putative uncharacterize 72.8 3 0.0001 38.6 4.3 17 215-231 30-46 (251)
230 3iij_A Coilin-interacting nucl 71.9 1.9 6.6E-05 37.8 2.6 19 213-231 9-27 (180)
231 2w0m_A SSO2452; RECA, SSPF, un 71.7 4.1 0.00014 37.1 5.0 18 214-231 22-39 (235)
232 3dmn_A Putative DNA helicase; 71.4 42 0.0014 28.9 11.3 80 412-507 45-124 (174)
233 1qde_A EIF4A, translation init 71.1 6.5 0.00022 35.6 6.2 82 417-503 69-161 (224)
234 1wrb_A DJVLGB; RNA helicase, D 70.8 9.5 0.00033 35.3 7.4 71 429-503 100-180 (253)
235 3fht_A ATP-dependent RNA helic 70.8 16 0.00054 36.4 9.6 70 255-334 267-340 (412)
236 2ewv_A Twitching motility prot 70.7 2.2 7.4E-05 42.7 2.9 19 213-231 134-152 (372)
237 2gza_A Type IV secretion syste 70.5 2.4 8.3E-05 42.2 3.2 20 212-231 172-191 (361)
238 3i5x_A ATP-dependent RNA helic 70.2 32 0.0011 36.1 12.2 76 254-336 339-418 (563)
239 1gku_B Reverse gyrase, TOP-RG; 70.2 6.2 0.00021 45.4 6.9 74 428-503 98-181 (1054)
240 3vaa_A Shikimate kinase, SK; s 69.8 2.3 7.7E-05 38.1 2.6 18 214-231 24-41 (199)
241 3i32_A Heat resistant RNA depe 69.6 15 0.00051 35.2 8.6 69 256-334 30-102 (300)
242 3pey_A ATP-dependent RNA helic 69.2 18 0.0006 35.8 9.5 75 254-338 243-321 (395)
243 1vma_A Cell division protein F 69.1 5.4 0.00019 38.5 5.3 16 216-231 105-120 (306)
244 1kgd_A CASK, peripheral plasma 69.1 2.4 8.1E-05 37.3 2.6 18 214-231 4-21 (180)
245 2bjv_A PSP operon transcriptio 68.9 2.9 9.8E-05 39.4 3.3 19 213-231 27-45 (265)
246 1qhx_A CPT, protein (chloramph 68.3 2 6.9E-05 37.5 1.9 17 215-231 3-19 (178)
247 3hws_A ATP-dependent CLP prote 68.3 4 0.00014 40.5 4.3 18 214-231 50-67 (363)
248 3nbx_X ATPase RAVA; AAA+ ATPas 68.2 3.7 0.00013 42.7 4.1 26 206-231 32-57 (500)
249 3a8t_A Adenylate isopentenyltr 67.9 2.3 7.9E-05 41.6 2.3 16 216-231 41-56 (339)
250 3cmw_A Protein RECA, recombina 67.7 5.5 0.00019 47.7 5.8 89 216-342 1432-1523(1706)
251 3cmu_A Protein RECA, recombina 67.7 6.5 0.00022 47.8 6.5 48 212-271 1078-1125(2050)
252 2qor_A Guanylate kinase; phosp 67.7 2.1 7.1E-05 38.6 1.9 20 212-231 9-28 (204)
253 4a2p_A RIG-I, retinoic acid in 67.6 6.2 0.00021 41.5 5.9 71 429-503 55-136 (556)
254 2d7d_A Uvrabc system protein B 67.6 28 0.00097 37.6 11.2 77 254-340 445-525 (661)
255 1ex7_A Guanylate kinase; subst 67.5 3 0.0001 37.0 2.9 16 216-231 2-17 (186)
256 2ffh_A Protein (FFH); SRP54, s 67.1 35 0.0012 34.5 11.0 17 215-231 98-114 (425)
257 1s2m_A Putative ATP-dependent 67.1 27 0.00094 34.5 10.5 70 255-334 259-332 (400)
258 3lw7_A Adenylate kinase relate 67.0 2.1 7E-05 37.1 1.7 14 218-231 4-17 (179)
259 2qmh_A HPR kinase/phosphorylas 66.6 2.8 9.6E-05 37.6 2.4 18 214-231 33-50 (205)
260 3trf_A Shikimate kinase, SK; a 66.6 2.8 9.6E-05 36.8 2.5 18 215-232 5-22 (185)
261 4ag6_A VIRB4 ATPase, type IV s 66.5 4 0.00014 41.1 3.9 42 214-266 34-75 (392)
262 3exa_A TRNA delta(2)-isopenten 66.5 2.6 8.8E-05 40.8 2.3 15 217-231 5-19 (322)
263 2j0s_A ATP-dependent RNA helic 66.5 21 0.00072 35.6 9.5 69 256-334 278-350 (410)
264 3foz_A TRNA delta(2)-isopenten 66.4 2.6 8.9E-05 40.7 2.3 14 218-231 13-26 (316)
265 3tr0_A Guanylate kinase, GMP k 66.2 3.4 0.00012 36.9 3.0 18 214-231 6-23 (205)
266 2ze6_A Isopentenyl transferase 65.1 2.9 9.8E-05 39.2 2.3 14 218-231 4-17 (253)
267 3tau_A Guanylate kinase, GMP k 64.9 3.2 0.00011 37.5 2.6 18 214-231 7-24 (208)
268 1hv8_A Putative ATP-dependent 64.8 23 0.00079 34.5 9.2 80 419-503 64-153 (367)
269 1zp6_A Hypothetical protein AT 64.7 2.7 9.3E-05 37.1 2.1 18 214-231 8-25 (191)
270 3gk5_A Uncharacterized rhodane 64.6 4.3 0.00015 32.2 3.0 37 428-464 54-90 (108)
271 1w36_B RECB, exodeoxyribonucle 64.5 9.9 0.00034 44.3 7.2 61 217-277 18-79 (1180)
272 3foj_A Uncharacterized protein 64.4 4.9 0.00017 31.3 3.3 36 429-464 56-91 (100)
273 2r44_A Uncharacterized protein 64.4 2.1 7.3E-05 41.9 1.3 24 208-231 39-62 (331)
274 2db3_A ATP-dependent RNA helic 64.3 21 0.00071 36.3 8.9 68 257-334 303-374 (434)
275 3sqw_A ATP-dependent RNA helic 64.2 49 0.0017 34.9 12.2 77 254-337 288-368 (579)
276 3eme_A Rhodanese-like domain p 64.2 4.8 0.00016 31.5 3.2 37 428-464 55-91 (103)
277 1q0u_A Bstdead; DEAD protein, 64.0 5.7 0.0002 35.9 4.2 71 429-503 72-156 (219)
278 2v6i_A RNA helicase; membrane, 64.0 9.6 0.00033 38.8 6.3 53 255-312 172-225 (431)
279 1kag_A SKI, shikimate kinase I 63.8 3.8 0.00013 35.4 2.8 17 215-231 4-20 (173)
280 1z6g_A Guanylate kinase; struc 63.4 4.1 0.00014 37.1 3.0 19 213-231 21-39 (218)
281 1kht_A Adenylate kinase; phosp 63.2 2.8 9.7E-05 36.9 1.9 17 215-231 3-19 (192)
282 1f2t_A RAD50 ABC-ATPase; DNA d 63.2 4.4 0.00015 34.4 3.0 22 218-241 26-47 (149)
283 2j41_A Guanylate kinase; GMP, 63.1 3.5 0.00012 36.8 2.5 19 213-231 4-22 (207)
284 2j37_W Signal recognition part 63.1 25 0.00086 36.4 9.2 15 217-231 103-117 (504)
285 3cm0_A Adenylate kinase; ATP-b 62.9 2.8 9.4E-05 36.9 1.7 18 214-231 3-20 (186)
286 1ofh_A ATP-dependent HSL prote 62.6 7.9 0.00027 37.0 5.1 17 215-231 50-66 (310)
287 1s96_A Guanylate kinase, GMP k 62.5 4 0.00014 37.3 2.8 20 212-231 13-32 (219)
288 3c8u_A Fructokinase; YP_612366 62.1 4.8 0.00016 36.3 3.2 26 215-242 22-47 (208)
289 1yks_A Genome polyprotein [con 62.0 10 0.00035 38.7 6.1 68 254-333 177-245 (440)
290 3bh0_A DNAB-like replicative h 62.0 5.6 0.00019 38.6 3.9 52 213-276 66-117 (315)
291 3a00_A Guanylate kinase, GMP k 61.9 4.4 0.00015 35.7 2.9 16 216-231 2-17 (186)
292 3kb2_A SPBC2 prophage-derived 61.8 3 0.0001 36.0 1.7 15 217-231 3-17 (173)
293 1y63_A LMAJ004144AAA protein; 61.7 4 0.00014 35.9 2.6 18 214-231 9-26 (184)
294 1ly1_A Polynucleotide kinase; 61.7 3 0.0001 36.3 1.7 15 217-231 4-18 (181)
295 3ney_A 55 kDa erythrocyte memb 61.7 4.1 0.00014 36.5 2.6 18 214-231 18-35 (197)
296 2pt7_A CAG-ALFA; ATPase, prote 61.6 3.5 0.00012 40.4 2.3 20 212-231 168-187 (330)
297 1wv9_A Rhodanese homolog TT165 61.5 5.8 0.0002 30.4 3.2 35 430-464 54-88 (94)
298 3b9p_A CG5977-PA, isoform A; A 61.3 3.1 0.0001 39.9 1.8 17 215-231 54-70 (297)
299 4b4t_I 26S protease regulatory 61.1 4.6 0.00016 40.8 3.1 51 178-231 177-232 (437)
300 3crm_A TRNA delta(2)-isopenten 61.0 3.7 0.00013 40.0 2.3 15 217-231 7-21 (323)
301 1ojl_A Transcriptional regulat 61.0 4.6 0.00016 39.0 3.1 18 214-231 24-41 (304)
302 3iwh_A Rhodanese-like domain p 60.9 6 0.00021 31.1 3.2 36 429-464 56-91 (103)
303 3kta_A Chromosome segregation 60.8 4.6 0.00016 35.3 2.8 23 217-241 28-50 (182)
304 3tbk_A RIG-I helicase domain; 60.4 11 0.00038 39.4 6.3 71 429-503 52-133 (555)
305 1m7g_A Adenylylsulfate kinase; 60.4 8 0.00028 34.8 4.5 29 202-231 13-41 (211)
306 2qz4_A Paraplegin; AAA+, SPG7, 59.9 4.2 0.00014 38.0 2.5 17 215-231 39-55 (262)
307 4eun_A Thermoresistant glucoki 59.9 5.6 0.00019 35.5 3.3 18 214-231 28-45 (200)
308 2ius_A DNA translocase FTSK; n 59.8 7 0.00024 40.7 4.3 18 214-231 166-183 (512)
309 3dkp_A Probable ATP-dependent 59.8 5.5 0.00019 36.8 3.3 84 417-503 84-181 (245)
310 3fmo_B ATP-dependent RNA helic 59.6 17 0.00057 34.8 6.8 68 429-503 162-241 (300)
311 2v54_A DTMP kinase, thymidylat 59.4 3.4 0.00012 36.9 1.7 18 214-231 3-20 (204)
312 1lv7_A FTSH; alpha/beta domain 59.4 3.4 0.00011 38.7 1.7 16 216-231 46-61 (257)
313 3nwj_A ATSK2; P loop, shikimat 59.4 5.3 0.00018 37.3 3.1 19 213-231 46-64 (250)
314 1um8_A ATP-dependent CLP prote 59.2 11 0.00039 37.3 5.7 17 215-231 72-88 (376)
315 3d3q_A TRNA delta(2)-isopenten 59.1 4.2 0.00014 39.9 2.3 15 217-231 9-23 (340)
316 3uk6_A RUVB-like 2; hexameric 59.1 4.4 0.00015 40.2 2.6 17 215-231 70-86 (368)
317 3g5j_A Putative ATP/GTP bindin 59.0 12 0.0004 30.6 4.9 36 430-465 90-126 (134)
318 1nij_A Hypothetical protein YJ 58.9 8.3 0.00028 37.4 4.5 14 218-231 7-20 (318)
319 1tue_A Replication protein E1; 58.8 4.7 0.00016 36.3 2.4 15 217-231 60-74 (212)
320 3eph_A TRNA isopentenyltransfe 58.6 5.4 0.00018 40.0 3.1 14 218-231 5-18 (409)
321 1znw_A Guanylate kinase, GMP k 58.5 5.3 0.00018 35.9 2.8 21 211-231 16-36 (207)
322 1rj9_A FTSY, signal recognitio 58.4 9.4 0.00032 36.8 4.7 26 215-242 102-127 (304)
323 1knq_A Gluconate kinase; ALFA/ 58.0 5.7 0.00019 34.4 2.9 17 215-231 8-24 (175)
324 4gp7_A Metallophosphoesterase; 57.9 3.2 0.00011 36.1 1.2 18 214-231 8-25 (171)
325 1ye8_A Protein THEP1, hypothet 57.8 6.1 0.00021 34.7 3.0 15 217-231 2-16 (178)
326 3nwn_A Kinesin-like protein KI 57.7 5.7 0.00019 39.3 3.1 24 208-231 96-121 (359)
327 1fuu_A Yeast initiation factor 57.6 34 0.0012 33.6 9.1 71 428-503 88-168 (394)
328 2rhm_A Putative kinase; P-loop 57.4 3.6 0.00012 36.3 1.5 17 215-231 5-21 (193)
329 4a2q_A RIG-I, retinoic acid in 57.3 18 0.0006 40.2 7.4 71 429-503 296-377 (797)
330 2c95_A Adenylate kinase 1; tra 57.3 5.7 0.0002 35.0 2.8 19 213-231 7-25 (196)
331 2jtq_A Phage shock protein E; 57.0 18 0.0006 26.8 5.2 47 417-464 29-76 (85)
332 1gvn_B Zeta; postsegregational 56.9 4.1 0.00014 39.0 1.9 15 217-231 35-49 (287)
333 3b9q_A Chloroplast SRP recepto 56.9 8.8 0.0003 36.9 4.2 27 214-242 99-125 (302)
334 2i3b_A HCR-ntpase, human cance 56.7 7.3 0.00025 34.5 3.4 25 216-242 2-26 (189)
335 4gl2_A Interferon-induced heli 56.5 3.1 0.00011 45.5 1.0 70 430-503 57-142 (699)
336 1bg2_A Kinesin; motor protein, 56.3 6.1 0.00021 38.5 3.0 24 208-231 69-94 (325)
337 2v9p_A Replication protein E1; 56.3 6.5 0.00022 37.9 3.2 26 214-241 125-150 (305)
338 2oca_A DAR protein, ATP-depend 55.9 72 0.0025 32.8 11.5 73 257-338 350-426 (510)
339 2plr_A DTMP kinase, probable t 55.8 4.1 0.00014 36.6 1.5 18 214-231 3-20 (213)
340 3uie_A Adenylyl-sulfate kinase 55.7 6.5 0.00022 35.0 2.9 18 214-231 24-41 (200)
341 3d8b_A Fidgetin-like protein 1 55.6 12 0.0004 37.0 5.0 17 215-231 117-133 (357)
342 3hr8_A Protein RECA; alpha and 55.4 8.1 0.00028 38.2 3.7 26 214-240 60-85 (356)
343 1t5c_A CENP-E protein, centrom 55.4 6.6 0.00023 38.6 3.1 24 208-231 69-94 (349)
344 3bgw_A DNAB-like replicative h 55.1 9.4 0.00032 39.0 4.3 27 214-241 196-222 (444)
345 1f9v_A Kinesin-like protein KA 55.1 7.1 0.00024 38.4 3.3 24 208-231 76-101 (347)
346 3t61_A Gluconokinase; PSI-biol 55.0 5.5 0.00019 35.5 2.3 16 216-231 19-34 (202)
347 2nr8_A Kinesin-like protein KI 54.9 6.8 0.00023 38.7 3.1 24 208-231 95-120 (358)
348 1ixz_A ATP-dependent metallopr 54.8 6.1 0.00021 36.7 2.7 16 216-231 50-65 (254)
349 2h58_A Kinesin-like protein KI 54.5 6.7 0.00023 38.3 2.9 25 207-231 71-97 (330)
350 3t0q_A AGR253WP; kinesin, alph 54.5 7 0.00024 38.5 3.1 24 208-231 77-102 (349)
351 3auy_A DNA double-strand break 54.4 6.9 0.00023 39.0 3.1 20 218-239 28-47 (371)
352 3gbj_A KIF13B protein; kinesin 54.4 7 0.00024 38.6 3.1 24 208-231 84-109 (354)
353 3b6u_A Kinesin-like protein KI 54.3 7 0.00024 38.8 3.1 24 208-231 93-118 (372)
354 3flh_A Uncharacterized protein 54.3 7.9 0.00027 31.5 2.9 36 429-464 71-108 (124)
355 1nks_A Adenylate kinase; therm 54.2 7.8 0.00027 33.9 3.2 15 217-231 3-17 (194)
356 1goj_A Kinesin, kinesin heavy 54.2 6.8 0.00023 38.6 3.0 23 209-231 73-97 (355)
357 1v8k_A Kinesin-like protein KI 54.2 7 0.00024 39.3 3.1 23 209-231 147-171 (410)
358 2iut_A DNA translocase FTSK; n 54.1 9.9 0.00034 40.0 4.3 26 215-241 214-239 (574)
359 3dc4_A Kinesin-like protein NO 54.1 6.1 0.00021 38.8 2.6 23 209-231 87-111 (344)
360 1tev_A UMP-CMP kinase; ploop, 54.1 4.5 0.00015 35.7 1.5 17 216-232 4-20 (196)
361 1c4o_A DNA nucleotide excision 54.0 56 0.0019 35.2 10.5 77 254-340 439-519 (664)
362 1x88_A Kinesin-like protein KI 54.0 6.8 0.00023 38.8 2.9 24 208-231 80-105 (359)
363 2zr9_A Protein RECA, recombina 53.9 11 0.00036 37.2 4.4 18 214-231 60-77 (349)
364 2y65_A Kinesin, kinesin heavy 53.9 6.9 0.00024 38.7 3.0 24 208-231 76-101 (365)
365 3cob_A Kinesin heavy chain-lik 53.9 6.2 0.00021 39.2 2.6 24 208-231 71-96 (369)
366 1xjc_A MOBB protein homolog; s 53.8 13 0.00045 32.2 4.4 14 218-231 7-20 (169)
367 3lre_A Kinesin-like protein KI 53.6 7.1 0.00024 38.6 3.0 24 208-231 97-122 (355)
368 3asz_A Uridine kinase; cytidin 53.6 7.8 0.00027 34.7 3.1 16 216-231 7-22 (211)
369 2zfi_A Kinesin-like protein KI 53.6 7.1 0.00024 38.7 3.0 24 208-231 81-106 (366)
370 2r2a_A Uncharacterized protein 53.4 7 0.00024 35.0 2.7 15 218-232 8-22 (199)
371 2vvg_A Kinesin-2; motor protei 53.4 7.2 0.00025 38.4 3.0 23 209-231 82-106 (350)
372 1u94_A RECA protein, recombina 53.3 11 0.00037 37.3 4.3 27 214-241 62-88 (356)
373 3qks_A DNA double-strand break 53.2 7.8 0.00027 34.8 3.0 25 217-243 25-49 (203)
374 2qt1_A Nicotinamide riboside k 53.2 5 0.00017 36.0 1.7 20 212-231 18-37 (207)
375 4etp_A Kinesin-like protein KA 53.1 6.8 0.00023 39.4 2.8 24 208-231 132-157 (403)
376 1htw_A HI0065; nucleotide-bind 53.0 6.7 0.00023 33.6 2.4 26 214-241 32-57 (158)
377 4a14_A Kinesin, kinesin-like p 53.0 7.2 0.00025 38.3 2.9 23 209-231 76-100 (344)
378 2bdt_A BH3686; alpha-beta prot 52.9 6.4 0.00022 34.6 2.3 15 217-231 4-18 (189)
379 1in4_A RUVB, holliday junction 52.7 7.8 0.00027 37.9 3.2 16 216-231 52-67 (334)
380 1zuh_A Shikimate kinase; alpha 52.7 6.5 0.00022 33.7 2.3 17 216-232 8-24 (168)
381 2c9o_A RUVB-like 1; hexameric 52.7 6.2 0.00021 40.6 2.5 17 215-231 63-79 (456)
382 3bfn_A Kinesin-like protein KI 52.5 6.6 0.00023 39.2 2.6 22 210-231 92-115 (388)
383 1tf7_A KAIC; homohexamer, hexa 51.9 50 0.0017 34.4 9.5 124 212-366 278-413 (525)
384 3qf7_A RAD50; ABC-ATPase, ATPa 51.9 7.8 0.00027 38.5 3.0 16 217-232 25-40 (365)
385 1ak2_A Adenylate kinase isoenz 51.9 7.1 0.00024 35.8 2.6 17 215-231 16-32 (233)
386 1cr0_A DNA primase/helicase; R 51.9 13 0.00043 35.5 4.5 19 213-231 33-51 (296)
387 3lnc_A Guanylate kinase, GMP k 51.8 5.8 0.0002 36.3 1.9 19 213-231 25-43 (231)
388 2og2_A Putative signal recogni 51.8 12 0.0004 37.1 4.2 27 214-242 156-182 (359)
389 3nhv_A BH2092 protein; alpha-b 51.6 11 0.00037 31.7 3.4 36 429-464 72-109 (144)
390 2bwj_A Adenylate kinase 5; pho 51.3 5.8 0.0002 35.1 1.8 17 215-231 12-28 (199)
391 2wbe_C Bipolar kinesin KRP-130 51.3 7.2 0.00025 38.8 2.6 24 208-231 92-117 (373)
392 1u0j_A DNA replication protein 51.2 10 0.00035 35.7 3.5 16 217-232 106-121 (267)
393 3tif_A Uncharacterized ABC tra 51.2 6.8 0.00023 36.2 2.3 17 214-230 30-46 (235)
394 2xau_A PRE-mRNA-splicing facto 51.2 39 0.0013 37.2 8.7 75 254-334 303-393 (773)
395 1qxn_A SUD, sulfide dehydrogen 51.1 11 0.00037 31.3 3.4 37 428-464 81-118 (137)
396 3u06_A Protein claret segregat 51.1 7.2 0.00025 39.3 2.6 25 207-231 129-155 (412)
397 1zak_A Adenylate kinase; ATP:A 50.9 8.3 0.00029 34.9 2.9 16 216-231 6-21 (222)
398 3fb4_A Adenylate kinase; psych 50.8 7.1 0.00024 35.2 2.3 15 217-231 2-16 (216)
399 1zd8_A GTP:AMP phosphotransfer 50.8 7.3 0.00025 35.5 2.4 17 215-231 7-23 (227)
400 1qf9_A UMP/CMP kinase, protein 50.7 7.5 0.00026 34.1 2.4 15 217-231 8-22 (194)
401 3hix_A ALR3790 protein; rhodan 50.7 8.5 0.00029 30.2 2.5 36 429-464 52-88 (106)
402 2jaq_A Deoxyguanosine kinase; 50.6 8.9 0.0003 33.9 3.0 14 218-231 3-16 (205)
403 3f9v_A Minichromosome maintena 50.4 8 0.00027 41.3 3.0 15 217-231 329-343 (595)
404 3eiq_A Eukaryotic initiation f 50.3 42 0.0015 33.2 8.4 85 416-503 94-189 (414)
405 2pez_A Bifunctional 3'-phospho 50.3 9.1 0.00031 33.2 2.9 17 215-231 5-21 (179)
406 1aky_A Adenylate kinase; ATP:A 50.2 8 0.00028 35.0 2.6 17 215-231 4-20 (220)
407 2yvu_A Probable adenylyl-sulfa 50.1 9.5 0.00032 33.4 3.0 17 215-231 13-29 (186)
408 1iy2_A ATP-dependent metallopr 50.0 8 0.00027 36.6 2.7 15 217-231 75-89 (278)
409 2fsx_A RV0390, COG0607: rhodan 50.0 14 0.00047 31.1 3.9 37 428-464 79-116 (148)
410 2x8a_A Nuclear valosin-contain 49.9 8 0.00027 36.6 2.6 16 216-231 45-60 (274)
411 2r8r_A Sensor protein; KDPD, P 49.9 15 0.0005 33.6 4.2 16 217-232 8-23 (228)
412 2wv9_A Flavivirin protease NS2 49.8 19 0.00063 39.1 5.8 68 254-333 410-478 (673)
413 1g8p_A Magnesium-chelatase 38 49.7 4.9 0.00017 39.4 1.1 17 215-231 45-61 (350)
414 3sr0_A Adenylate kinase; phosp 49.7 7.7 0.00026 35.0 2.3 15 218-232 3-17 (206)
415 1xp8_A RECA protein, recombina 49.7 14 0.00047 36.7 4.4 27 214-241 73-99 (366)
416 2rep_A Kinesin-like protein KI 49.7 8.3 0.00028 38.3 2.8 24 208-231 107-132 (376)
417 2heh_A KIF2C protein; kinesin, 49.7 8.3 0.00028 38.5 2.7 24 208-231 126-151 (387)
418 1via_A Shikimate kinase; struc 49.6 7.8 0.00027 33.6 2.3 15 217-231 6-20 (175)
419 3dl0_A Adenylate kinase; phosp 49.4 7.7 0.00026 35.0 2.3 15 217-231 2-16 (216)
420 2wwf_A Thymidilate kinase, put 49.4 10 0.00035 33.8 3.2 18 214-231 9-26 (212)
421 2r62_A Cell division protease 49.2 4.5 0.00015 38.0 0.7 17 215-231 44-60 (268)
422 1nn5_A Similar to deoxythymidy 49.2 7 0.00024 35.1 2.0 18 214-231 8-25 (215)
423 2owm_A Nckin3-434, related to 49.0 9 0.00031 39.0 2.9 24 208-231 128-153 (443)
424 1ukz_A Uridylate kinase; trans 48.8 6.4 0.00022 35.0 1.7 15 217-231 17-31 (203)
425 3umf_A Adenylate kinase; rossm 48.7 8.2 0.00028 35.1 2.4 17 216-232 30-46 (217)
426 2vli_A Antibiotic resistance p 48.6 5.9 0.0002 34.5 1.4 17 215-231 5-21 (183)
427 2f1r_A Molybdopterin-guanine d 48.5 5.7 0.00019 34.6 1.2 23 218-242 5-27 (171)
428 1e6c_A Shikimate kinase; phosp 48.5 8.2 0.00028 33.2 2.3 15 217-231 4-18 (173)
429 2iyv_A Shikimate kinase, SK; t 48.3 8.3 0.00029 33.6 2.3 15 217-231 4-18 (184)
430 2k0z_A Uncharacterized protein 48.2 25 0.00087 27.6 5.0 37 428-464 55-91 (110)
431 3ipz_A Monothiol glutaredoxin- 48.1 71 0.0024 24.9 7.7 54 419-474 9-68 (109)
432 2jlq_A Serine protease subunit 48.0 21 0.00072 36.5 5.6 67 255-333 189-256 (451)
433 1n0w_A DNA repair protein RAD5 47.4 8.2 0.00028 35.3 2.3 18 214-231 23-40 (243)
434 1gmx_A GLPE protein; transfera 47.3 10 0.00036 29.7 2.6 38 428-465 57-95 (108)
435 2z0m_A 337AA long hypothetical 47.3 30 0.001 33.2 6.4 70 429-503 56-135 (337)
436 1sky_E F1-ATPase, F1-ATP synth 47.2 23 0.00079 36.2 5.6 21 211-231 147-167 (473)
437 2pt5_A Shikimate kinase, SK; a 47.1 7.1 0.00024 33.4 1.6 15 217-231 2-16 (168)
438 3a4m_A L-seryl-tRNA(SEC) kinas 46.8 6.9 0.00024 36.7 1.6 16 216-231 5-20 (260)
439 1cke_A CK, MSSA, protein (cyti 46.8 8.9 0.0003 34.8 2.3 16 216-231 6-21 (227)
440 3b6e_A Interferon-induced heli 46.7 15 0.00051 32.7 3.8 55 429-487 82-140 (216)
441 4a74_A DNA repair and recombin 46.5 7.9 0.00027 35.1 2.0 18 214-231 24-41 (231)
442 2pbr_A DTMP kinase, thymidylat 46.4 7.4 0.00025 34.2 1.7 14 218-231 3-16 (195)
443 1e4v_A Adenylate kinase; trans 46.4 9.5 0.00032 34.3 2.4 15 217-231 2-16 (214)
444 2if2_A Dephospho-COA kinase; a 46.3 9.5 0.00033 33.9 2.4 15 217-231 3-17 (204)
445 1tq1_A AT5G66040, senescence-a 45.9 12 0.00041 30.6 2.8 37 428-464 81-118 (129)
446 3pxg_A Negative regulator of g 45.8 13 0.00043 38.4 3.5 17 215-231 201-217 (468)
447 1jjv_A Dephospho-COA kinase; P 45.7 9.5 0.00032 34.0 2.3 14 218-231 5-18 (206)
448 2hhg_A Hypothetical protein RP 45.7 12 0.00043 30.8 2.9 37 428-464 85-122 (139)
449 1odf_A YGR205W, hypothetical 3 45.6 12 0.00041 35.7 3.1 14 218-231 34-47 (290)
450 2cdn_A Adenylate kinase; phosp 45.6 9.4 0.00032 33.9 2.3 16 216-231 21-36 (201)
451 2cbz_A Multidrug resistance-as 45.6 9.4 0.00032 35.2 2.3 17 214-230 30-46 (237)
452 3be4_A Adenylate kinase; malar 45.5 11 0.00036 34.1 2.7 16 216-231 6-21 (217)
453 1np6_A Molybdopterin-guanine d 44.8 14 0.00046 32.3 3.1 15 217-231 8-22 (174)
454 3aez_A Pantothenate kinase; tr 44.8 12 0.00042 36.1 3.1 25 216-242 91-115 (312)
455 1sgw_A Putative ABC transporte 44.7 10 0.00035 34.3 2.4 18 214-231 34-51 (214)
456 2z0h_A DTMP kinase, thymidylat 44.6 13 0.00044 32.7 3.0 14 218-231 3-16 (197)
457 1tf5_A Preprotein translocase 44.4 49 0.0017 36.4 8.0 69 429-503 124-209 (844)
458 2pcj_A ABC transporter, lipopr 44.2 10 0.00035 34.6 2.3 17 214-230 29-45 (224)
459 3tlx_A Adenylate kinase 2; str 44.2 11 0.00039 34.8 2.6 17 215-231 29-45 (243)
460 3gfo_A Cobalt import ATP-bindi 44.0 10 0.00034 36.0 2.2 18 214-231 33-50 (275)
461 1rz3_A Hypothetical protein rb 44.0 14 0.00049 32.8 3.2 15 217-231 24-38 (201)
462 2p5t_B PEZT; postsegregational 43.9 6.8 0.00023 36.5 1.1 15 217-231 34-48 (253)
463 1vee_A Proline-rich protein fa 43.9 23 0.00078 29.1 4.3 37 428-464 73-110 (134)
464 1uf9_A TT1252 protein; P-loop, 43.9 11 0.00037 33.3 2.4 15 217-231 10-24 (203)
465 2xb4_A Adenylate kinase; ATP-b 43.8 11 0.00036 34.4 2.3 14 218-231 3-16 (223)
466 2bbw_A Adenylate kinase 4, AK4 43.7 11 0.00036 34.9 2.3 17 215-231 27-43 (246)
467 2pze_A Cystic fibrosis transme 43.3 10 0.00036 34.7 2.2 18 214-231 33-50 (229)
468 2ghi_A Transport protein; mult 43.3 11 0.00036 35.5 2.3 18 214-231 45-62 (260)
469 1g41_A Heat shock protein HSLU 43.0 12 0.00041 38.1 2.7 17 215-231 50-66 (444)
470 3o8b_A HCV NS3 protease/helica 43.0 32 0.0011 37.0 6.2 66 254-333 396-461 (666)
471 3bs4_A Uncharacterized protein 42.9 26 0.00089 32.7 4.9 52 215-278 21-72 (260)
472 1gtv_A TMK, thymidylate kinase 42.9 8.2 0.00028 34.6 1.4 14 218-231 3-16 (214)
473 2ff7_A Alpha-hemolysin translo 42.6 11 0.00037 35.1 2.2 18 214-231 34-51 (247)
474 3d1p_A Putative thiosulfate su 42.3 13 0.00045 30.7 2.6 37 428-464 90-127 (139)
475 4g1u_C Hemin import ATP-bindin 42.2 11 0.00037 35.5 2.2 17 214-230 36-52 (266)
476 2r2a_A Uncharacterized protein 42.1 18 0.00062 32.3 3.5 14 329-342 88-101 (199)
477 1mv5_A LMRA, multidrug resista 42.0 10 0.00035 35.1 1.9 18 214-231 27-44 (243)
478 3rc3_A ATP-dependent RNA helic 41.9 65 0.0022 34.8 8.5 73 257-340 323-401 (677)
479 3ice_A Transcription terminati 41.9 36 0.0012 34.0 5.8 28 204-231 160-190 (422)
480 1zu4_A FTSY; GTPase, signal re 41.8 21 0.0007 34.6 4.2 17 215-231 105-121 (320)
481 2whx_A Serine protease/ntpase/ 41.6 37 0.0013 36.3 6.5 67 255-333 356-423 (618)
482 3tqc_A Pantothenate kinase; bi 41.6 14 0.00049 35.7 3.0 23 218-242 95-117 (321)
483 1g6h_A High-affinity branched- 41.5 11 0.00039 35.1 2.2 17 214-230 32-48 (257)
484 2fsf_A Preprotein translocase 41.4 52 0.0018 36.3 7.5 69 429-503 115-200 (853)
485 1b0u_A Histidine permease; ABC 41.4 12 0.0004 35.2 2.3 17 214-230 31-47 (262)
486 1vht_A Dephospho-COA kinase; s 41.2 9.9 0.00034 34.3 1.7 15 217-231 6-20 (218)
487 2ce7_A Cell division protein F 41.1 9.7 0.00033 39.3 1.8 16 216-231 50-65 (476)
488 2yjt_D ATP-dependent RNA helic 47.2 5.7 0.00019 34.4 0.0 70 255-334 31-104 (170)
489 3k1j_A LON protease, ATP-depen 40.9 17 0.00057 38.9 3.7 22 210-231 55-76 (604)
490 2zu0_C Probable ATP-dependent 40.8 13 0.00044 35.0 2.5 18 214-231 45-62 (267)
491 4e22_A Cytidylate kinase; P-lo 40.8 13 0.00046 34.5 2.6 18 214-231 26-43 (252)
492 1ji0_A ABC transporter; ATP bi 40.8 12 0.00041 34.6 2.2 18 214-231 31-48 (240)
493 2z83_A Helicase/nucleoside tri 40.3 25 0.00085 36.0 4.8 53 255-312 191-244 (459)
494 2d2e_A SUFC protein; ABC-ATPas 40.3 13 0.00045 34.6 2.4 18 214-231 28-45 (250)
495 1vpl_A ABC transporter, ATP-bi 40.1 13 0.00043 34.8 2.3 17 214-230 40-56 (256)
496 2qi9_C Vitamin B12 import ATP- 40.1 12 0.00043 34.7 2.2 17 214-230 25-41 (249)
497 2olj_A Amino acid ABC transpor 40.1 13 0.00043 35.0 2.3 17 214-230 49-65 (263)
498 3zyw_A Glutaredoxin-3; metal b 39.8 1E+02 0.0036 24.1 7.5 45 429-473 15-65 (111)
499 2ixe_A Antigen peptide transpo 39.5 13 0.00045 35.1 2.3 17 214-230 44-60 (271)
500 2nq2_C Hypothetical ABC transp 39.3 13 0.00045 34.7 2.2 17 214-230 30-46 (253)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2e-64 Score=532.50 Aligned_cols=378 Identities=38% Similarity=0.629 Sum_probs=340.3
Q ss_pred hccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCC
Q 039378 176 YKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRV 253 (600)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~ 253 (600)
+.++.+|.++++++.++.++. ||..|+|+|.++||.++.|+|++++||||||||++|++|++.+++..... ....
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~---~~~~ 128 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE---LELG 128 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC---CCTT
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc---cccC
Confidence 457889999999999999986 99999999999999999999999999999999999999999998876432 1234
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEE
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVV 333 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 333 (600)
++++|||+|||+||.|+++.+.+++...++++..++||.....+...+..+++|+|+||++|.+++.+....+.++++||
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lV 208 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVV 208 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEE
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEE
Confidence 67899999999999999999999998888999999999999888888888999999999999999998888899999999
Q ss_pred EcccchhhcCCChHHHHHHHHhc--CcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCc
Q 039378 334 LDEADRMLDMGFEEPVRFILSKI--SLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDR 411 (600)
Q Consensus 334 iDEah~l~~~~~~~~~~~il~~~--~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 411 (600)
|||||+|++++|...+..++..+ +..+|+++||||+|..+..+...++ .++..+.++... .....+.+.+..+...
T Consensus 209 lDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l-~~~~~i~~~~~~-~~~~~i~~~~~~~~~~ 286 (434)
T 2db3_A 209 LDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFL-KNYVFVAIGIVG-GACSDVKQTIYEVNKY 286 (434)
T ss_dssp EETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTC-SSCEEEEESSTT-CCCTTEEEEEEECCGG
T ss_pred EccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhc-cCCEEEEecccc-ccccccceEEEEeCcH
Confidence 99999999999999999999875 5678999999999999999998888 577777776543 2345567777777777
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecccccc
Q 039378 412 SRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAAR 491 (600)
Q Consensus 412 ~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~ 491 (600)
.+...+..++... ..++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 287 ~k~~~l~~~l~~~----~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~r 362 (434)
T 2db3_A 287 AKRSKLIEILSEQ----ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASR 362 (434)
T ss_dssp GHHHHHHHHHHHC----CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTS
T ss_pred HHHHHHHHHHHhC----CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhC
Confidence 7777777776653 345999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcC-CcHhHHHHHHHHHHHhcCCCcHHHHhh
Q 039378 492 GLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTN-HNKALAGELVNVLREARQVVPDALLKF 562 (600)
Q Consensus 492 Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~-~d~~~~~~i~~~l~~~~~~ip~~l~~~ 562 (600)
|||+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++ .+......+.+++...++.+|+||.++
T Consensus 363 GlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 363 GLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp SCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred CCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 99999999999999999999999999999999999999999995 577889999999999999999998754
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.3e-59 Score=493.30 Aligned_cols=387 Identities=37% Similarity=0.647 Sum_probs=337.3
Q ss_pred hccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccC-------
Q 039378 176 YKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKG------- 246 (600)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~------- 246 (600)
+.++.+|.++++++.+++++. ||..|+|+|.++|+.++.++|++++||||+|||++|++|++..+......
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccc
Confidence 566788999999999999987 99999999999999999999999999999999999999999988765321
Q ss_pred ---ccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccC
Q 039378 247 ---KAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNV 323 (600)
Q Consensus 247 ---~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~ 323 (600)
.......++++|||+||++|+.|+++.+..++...++++..++||.....+...+..+++|+|+||++|.+++....
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~ 170 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK 170 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS
T ss_pred cccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC
Confidence 00112235789999999999999999999998888899999999999888888888889999999999999998887
Q ss_pred CCccceEEEEEcccchhhcCCChHHHHHHHHhc--Cc--CCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCC
Q 039378 324 CHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI--SL--ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANH 399 (600)
Q Consensus 324 ~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~--~~--~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 399 (600)
+.+.++++|||||||++.+++|...+..++... +. ..|+++||||++..+..+...++ ..+..+...... ....
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~ 248 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL-DEYIFLAVGRVG-STSE 248 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC-SSCEEEEEC-----CCS
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc-CCCEEEEeCCCC-CCcc
Confidence 788999999999999999999999999988753 22 56899999999999998888888 566666655433 2334
Q ss_pred CeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q 039378 400 DVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGT 479 (600)
Q Consensus 400 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~ 479 (600)
.+.+.+..+....+...+..++... ...+++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|.
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 326 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTC--CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred CceEEEEEeccHhHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC
Confidence 5666666666666777777666643 24678999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcHHH
Q 039378 480 CPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDAL 559 (600)
Q Consensus 480 ~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l 559 (600)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+....+.+|.++
T Consensus 327 ~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 406 (417)
T 2i4i_A 327 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWL 406 (417)
T ss_dssp SCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHH
T ss_pred CCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhh
Q 039378 560 LKFGTHV 566 (600)
Q Consensus 560 ~~~~~~~ 566 (600)
..++...
T Consensus 407 ~~~~~~~ 413 (417)
T 2i4i_A 407 ENMAYEH 413 (417)
T ss_dssp HHHHTCS
T ss_pred HHHHHhh
Confidence 9887654
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=6.4e-58 Score=481.13 Aligned_cols=367 Identities=31% Similarity=0.537 Sum_probs=321.1
Q ss_pred cccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCc
Q 039378 178 ALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255 (600)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~ 255 (600)
...+|.++++++.++..+. ||..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--------~~~~ 106 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--------VRET 106 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT--------SCSC
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc--------cCCc
Confidence 4567999999999999987 99999999999999999999999999999999999999988765322 1256
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEc
Q 039378 256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLD 335 (600)
Q Consensus 256 ~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViD 335 (600)
++|||+||++|+.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.+++......+.++++||||
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViD 186 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 186 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEc
Confidence 79999999999999999999999888999999999999888888888889999999999999998887888999999999
Q ss_pred ccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcc-hH
Q 039378 336 EADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRS-RD 414 (600)
Q Consensus 336 Eah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~ 414 (600)
|||++.++++...+..++..++...|+++||||++..+..+...++ ..+..+.+..... ....+.+++....... +.
T Consensus 187 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~ 264 (410)
T 2j0s_A 187 EADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFM-TDPIRILVKRDEL-TLEGIKQFFVAVEREEWKF 264 (410)
T ss_dssp THHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTC-SSCEEECCCGGGC-SCTTEEEEEEEESSTTHHH
T ss_pred cHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHc-CCCEEEEecCccc-cCCCceEEEEEeCcHHhHH
Confidence 9999999999999999999998899999999999998887777777 5666665544332 2334555555554433 55
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCC
Q 039378 415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494 (600)
Q Consensus 415 ~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gld 494 (600)
..+..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|
T Consensus 265 ~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 341 (410)
T 2j0s_A 265 DTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 341 (410)
T ss_dssp HHHHHHHHHH---TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCC
T ss_pred HHHHHHHHhc---CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCC
Confidence 5666665544 3579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcH
Q 039378 495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPD 557 (600)
Q Consensus 495 i~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~ 557 (600)
+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+...++.+..++......+|.
T Consensus 342 i~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 342 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp CTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred cccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 999999999999999999999999999999999999999999999888888777655554543
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.1e-56 Score=472.34 Aligned_cols=373 Identities=30% Similarity=0.523 Sum_probs=306.5
Q ss_pred ccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCC
Q 039378 177 KALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN 254 (600)
Q Consensus 177 ~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~ 254 (600)
....+|.++++++.+++.+. +|..|+|+|.++++.++.++++++++|||+|||++|++|++..+.... .+
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~ 108 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--------KA 108 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS--------CS
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC--------Cc
Confidence 34567999999999999886 899999999999999999999999999999999999999988764432 24
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHh-cCCcEEEEchHHHHHHHHccCCCccceEEEE
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALR-SGVDIVIGTPGRLIDLIEMNVCHLSEVSFVV 333 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 333 (600)
+++||++||++|+.|+.+.+..++...++.+...+|+.........+. .+++|+|+||++|.+.+......+.++++||
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 188 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEE
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEE
Confidence 568999999999999999999998888888899999988877776665 6689999999999999988888889999999
Q ss_pred EcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecC-cc
Q 039378 334 LDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDD-RS 412 (600)
Q Consensus 334 iDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~ 412 (600)
|||||++.++++...+..++..++...|+++||||++..+..+...++ ..+..+......... ..+.+.+..... ..
T Consensus 189 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 266 (414)
T 3eiq_A 189 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFM-RDPIRILVKKEELTL-EGIRQFYINVEREEW 266 (414)
T ss_dssp ECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTC-SSCEEECCCCCCCCT-TSCCEEEEECSSSTT
T ss_pred EECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHc-CCCEEEEecCCccCC-CCceEEEEEeChHHh
Confidence 999999999999999999999999999999999999999988888877 566666555443332 334444444433 33
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccC
Q 039378 413 RDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARG 492 (600)
Q Consensus 413 ~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~G 492 (600)
+...+..++.. ...+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|
T Consensus 267 ~~~~l~~~~~~---~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 343 (414)
T 3eiq_A 267 KLDTLCDLYET---LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARG 343 (414)
T ss_dssp HHHHHHHHHHS---SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--
T ss_pred HHHHHHHHHHh---CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccC
Confidence 55555554443 346799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcHHHHhh
Q 039378 493 LDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKF 562 (600)
Q Consensus 493 ldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l~~~ 562 (600)
||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.+..++......+|..+.++
T Consensus 344 idip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 344 IDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred CCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 9999999999999999999999999999999999999999999999999999988887777777766543
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=8.5e-56 Score=463.44 Aligned_cols=369 Identities=32% Similarity=0.530 Sum_probs=319.7
Q ss_pred cccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCc
Q 039378 178 ALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255 (600)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~ 255 (600)
...+|+++++++.+++.+. ||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.... .++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~--------~~~ 90 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL--------NKI 90 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS--------CSC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc--------CCc
Confidence 3467999999999999987 999999999999999999999999999999999999999887754321 245
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEc
Q 039378 256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLD 335 (600)
Q Consensus 256 ~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViD 335 (600)
++||++||++|+.|+++.+..++...++.+..++|+.........+..+++|+|+||++|.+++......+.++++||||
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMD 170 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEe
Confidence 68999999999999999999999888899999999988887777777889999999999999988877788999999999
Q ss_pred ccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHH
Q 039378 336 EADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ 415 (600)
Q Consensus 336 Eah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (600)
|||++.+.++...+..++..++...|+++||||++..+......++ ..+..+..... .....+.+++.......+..
T Consensus 171 EaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~ 247 (400)
T 1s2m_A 171 EADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHL-HKPYEINLMEE--LTLKGITQYYAFVEERQKLH 247 (400)
T ss_dssp SHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHC-SSCEEESCCSS--CBCTTEEEEEEECCGGGHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHc-CCCeEEEeccc--cccCCceeEEEEechhhHHH
Confidence 9999988778888888888888889999999999999988888877 45555433322 23344566666666666666
Q ss_pred HHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCC
Q 039378 416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495 (600)
Q Consensus 416 ~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi 495 (600)
.+..++... ..+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+
T Consensus 248 ~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi 324 (400)
T 1s2m_A 248 CLNTLFSKL---QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDI 324 (400)
T ss_dssp HHHHHHHHS---CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCC
T ss_pred HHHHHHhhc---CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCc
Confidence 666665543 46799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcHHHH
Q 039378 496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALL 560 (600)
Q Consensus 496 ~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l~ 560 (600)
|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+......+|.++.
T Consensus 325 p~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 389 (400)
T 1s2m_A 325 QAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATID 389 (400)
T ss_dssp TTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCC
T ss_pred cCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccccc
Confidence 99999999999999999999999999999999999999999998888887777655555555443
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.4e-55 Score=457.41 Aligned_cols=367 Identities=29% Similarity=0.470 Sum_probs=313.9
Q ss_pred cccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceE
Q 039378 180 KSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257 (600)
Q Consensus 180 ~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~ 257 (600)
.+|+++++++.++..+. ||..|+|+|.++++.++.++++++++|||+|||++|++|++..+.... .++++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--------~~~~~ 79 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVSV 79 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT--------TCCCE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC--------CCeeE
Confidence 46899999999999987 999999999999999999999999999999999999999887654321 24568
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCC-CceEEEEeCCCChHHHHHHHhc-CCcEEEEchHHHHHHHHccCCCccceEEEEEc
Q 039378 258 LVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRS-GVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLD 335 (600)
Q Consensus 258 liv~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViD 335 (600)
||++||++|+.|+.+.+.++.... ++++..++|+.........+.. .++|+|+||++|..++......+.++++||+|
T Consensus 80 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViD 159 (391)
T 1xti_A 80 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 159 (391)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEe
Confidence 999999999999999999998765 6888999999887766666554 47999999999999988877788999999999
Q ss_pred ccchhhcC-CChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchH
Q 039378 336 EADRMLDM-GFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRD 414 (600)
Q Consensus 336 Eah~l~~~-~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (600)
|||++.++ ++...+..++...+...|+++||||++..+..+...++ ..+..+............+.+.+.......+.
T Consensus 160 EaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
T 1xti_A 160 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFM-QDPMEIFVDDETKLTLHGLQQYYVKLKDNEKN 238 (391)
T ss_dssp SHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHC-SSCEEEECCCCCCCCCTTCEEEEEECCGGGHH
T ss_pred CHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHc-CCCeEEEecCccccCcccceEEEEEcCchhHH
Confidence 99999874 56777888888888889999999999999998888888 56776666554444445566666667677777
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCC
Q 039378 415 QRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494 (600)
Q Consensus 415 ~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gld 494 (600)
..+..++... ..+++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|
T Consensus 239 ~~l~~~l~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid 315 (391)
T 1xti_A 239 RKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMD 315 (391)
T ss_dssp HHHHHHHHHS---CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBC
T ss_pred HHHHHHHHhc---CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCC
Confidence 7777766654 4689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCc-HhHHHHHHHHHHHhcCCCcHH
Q 039378 495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN-KALAGELVNVLREARQVVPDA 558 (600)
Q Consensus 495 i~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d-~~~~~~i~~~l~~~~~~ip~~ 558 (600)
+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+ ..++..+.+.+......+|..
T Consensus 316 i~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 316 IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp CTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred cccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 9999999999999999999999999999999999999999874 455566665554444444443
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-53 Score=439.60 Aligned_cols=352 Identities=36% Similarity=0.589 Sum_probs=306.3
Q ss_pred ccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcC-CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCc
Q 039378 179 LKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNG-RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255 (600)
Q Consensus 179 ~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~-~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~ 255 (600)
..+|+++++++.++..+. ||..|+|+|.++++.++++ +++++++|||+|||++|++|++..+... .++
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---------~~~ 75 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---------NGI 75 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---------SSC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc---------CCC
Confidence 356999999999999987 9999999999999999988 6999999999999999999987765332 255
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEc
Q 039378 256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLD 335 (600)
Q Consensus 256 ~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViD 335 (600)
++||++|+++|+.|+.+.+..+....++.+..++|+.........+. +++|+|+||++|.+.+......+.++++||+|
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 154 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILD 154 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEe
Confidence 68999999999999999999998877888899999988776665555 58999999999999998877788999999999
Q ss_pred ccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHH
Q 039378 336 EADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQ 415 (600)
Q Consensus 336 Eah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (600)
|||.+.++++...+..++..++...+++++|||++.........++ ..+..+.... ...+.+.+.......+..
T Consensus 155 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 228 (367)
T 1hv8_A 155 EADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYM-GDYSFIKAKI-----NANIEQSYVEVNENERFE 228 (367)
T ss_dssp THHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHC-CSEEEEECCS-----SSSSEEEEEECCGGGHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHc-CCCeEEEecC-----CCCceEEEEEeChHHHHH
Confidence 9999999999999999999998899999999999999888888877 3444333221 224455555555555555
Q ss_pred HHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCC
Q 039378 416 RLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495 (600)
Q Consensus 416 ~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi 495 (600)
.+..++. ....++||||+++..+..++..|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+
T Consensus 229 ~l~~~l~----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~ 304 (367)
T 1hv8_A 229 ALCRLLK----NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDV 304 (367)
T ss_dssp HHHHHHC----STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCC
T ss_pred HHHHHHh----cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCc
Confidence 5554443 456799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHH
Q 039378 496 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLRE 550 (600)
Q Consensus 496 ~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~ 550 (600)
|++++||++++|+++..|+||+||+||.|+.|.+++++++.+...++.|.+.++.
T Consensus 305 ~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 305 NDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp SCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred ccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999888888777653
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.9e-54 Score=468.06 Aligned_cols=365 Identities=29% Similarity=0.441 Sum_probs=296.9
Q ss_pred ccccccCC-CCHHHHHhhc--CCCCCcHHHHHHhhhhh--cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCC
Q 039378 179 LKSFTESK-LPDDVLGCCK--NFKNPSPIQSHAWPFLL--NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRV 253 (600)
Q Consensus 179 ~~~~~~~~-l~~~l~~~~~--~~~~~~~~Q~~~i~~il--~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~ 253 (600)
+..|.+.+ |++.++.++. ||..|+|+|.++|+.++ .++|+|++||||+|||++|++|++..+...... ...
T Consensus 19 ~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~----~~~ 94 (579)
T 3sqw_A 19 LDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD----SQY 94 (579)
T ss_dssp HHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS----STT
T ss_pred HHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc----ccC
Confidence 33343333 9999999887 89999999999999999 678999999999999999999999998876432 223
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcC----CCCceEEEEeCCCChHHHHHHHh-cCCcEEEEchHHHHHHHHcc-CCCcc
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGK----PCGVKSVCVYGGTSKQPQITALR-SGVDIVIGTPGRLIDLIEMN-VCHLS 327 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~-~~~l~ 327 (600)
++++|||+||++|+.|+++.+..+.. ...+.+..++||.....+...+. .+++|+|+||++|.+++... ...+.
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 174 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccc
Confidence 57799999999999999999998752 23467788899988877776664 37999999999999988764 34578
Q ss_pred ceEEEEEcccchhhcCCChHHHHHHHHhcCc-------CCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCc---cccc
Q 039378 328 EVSFVVLDEADRMLDMGFEEPVRFILSKISL-------ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSE---DLAA 397 (600)
Q Consensus 328 ~~~~lViDEah~l~~~~~~~~~~~il~~~~~-------~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~---~~~~ 397 (600)
.+++|||||||+|++++|...+..++..++. .+|+++||||+++.+..+...++ ..+..+.+... ....
T Consensus 175 ~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l-~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIM-NKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTC-CSSEEEEEESSCSSSCSS
T ss_pred cCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHc-CCCceEEEeecCcccccc
Confidence 8999999999999999999999888776643 56999999999999998888887 45544443321 1122
Q ss_pred CCCeeEEEEEecCc-chHHHHHHH-HHHHhh-cCCCeEEEEEeehhcHHHHHHHHHhC---CCeEEEEcCCCCHHHHHHH
Q 039378 398 NHDVMQIVEVLDDR-SRDQRLLAL-LEKYHK-SQRNRVLVFALYQLEADRLENMLRRS---GWKVVAIHGKKAQHERTKS 471 (600)
Q Consensus 398 ~~~~~~~~~~~~~~-~~~~~l~~~-l~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~r~~~ 471 (600)
...+.+........ .....++.. ...+.. ....++||||+++..+..++..|... ++.+..+||+|++.+|..+
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 23344444444332 222223332 222222 34679999999999999999999887 8999999999999999999
Q ss_pred HHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHH
Q 039378 472 LSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVL 548 (600)
Q Consensus 472 ~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l 548 (600)
++.|+.|..+|||||+++++|||+|++++||+|++|.++..|+||+|||||.|+.|.|++|+++.+...++.|....
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887776543
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=9.8e-56 Score=461.97 Aligned_cols=371 Identities=32% Similarity=0.532 Sum_probs=181.6
Q ss_pred ccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCC
Q 039378 177 KALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN 254 (600)
Q Consensus 177 ~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~ 254 (600)
.....|+++++++.++..+. ||..|+|+|.++++.++.++++++++|||+|||++|++|++..+.... .+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~--------~~ 89 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV--------KA 89 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC--------CS
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC--------CC
Confidence 44567999999999999987 999999999999999999999999999999999999999987764432 25
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEE
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVL 334 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVi 334 (600)
+++||++||++|+.|+++.+.++....++.+..++|+.........+. +++|+|+||++|...+......+.++++||+
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 679999999999999999999999888899999999988766655544 5899999999999999887777889999999
Q ss_pred cccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCc-ch
Q 039378 335 DEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDR-SR 413 (600)
Q Consensus 335 DEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~ 413 (600)
||||++.++++...+..++..++...|+++||||++..+..+...++ ..+..+......... ..+.+.+...... .+
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 246 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFM-RNPVRILVKKDELTL-EGIKQFYVNVEEEEYK 246 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHC-CSCEEEEECC----------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhc-CCCeEEEecCccccC-CCceEEEEEcCchhhH
Confidence 99999999999999999999999999999999999999888888887 567666655433222 2222222222222 23
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCC
Q 039378 414 DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGL 493 (600)
Q Consensus 414 ~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gl 493 (600)
...+..++... ..+++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+
T Consensus 247 ~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gl 323 (394)
T 1fuu_A 247 YECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI 323 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcC---CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCC
Confidence 33344444332 357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcHHHHh
Q 039378 494 DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLK 561 (600)
Q Consensus 494 di~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~l~~ 561 (600)
|+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.+...+......+|..+.+
T Consensus 324 di~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 391 (394)
T 1fuu_A 324 DVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 391 (394)
T ss_dssp --------------------------------------------------------------------
T ss_pred CcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhh
Confidence 99999999999999999999999999999999999999999999988888888887776667665543
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.2e-53 Score=449.00 Aligned_cols=364 Identities=30% Similarity=0.467 Sum_probs=300.4
Q ss_pred hccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcC--CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCC
Q 039378 176 YKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGK 251 (600)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~--~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~ 251 (600)
...+.+|+++++++.+++.+. ||..|+|+|.++++.++.+ ++++++||||+|||++|++|++..+....
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~------- 93 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN------- 93 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS-------
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC-------
Confidence 345778999999999999987 9999999999999999987 89999999999999999999988764432
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHc-cCCCccce
Q 039378 252 RVNPLCLVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEM-NVCHLSEV 329 (600)
Q Consensus 252 ~~~~~~liv~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~~ 329 (600)
.++++|||+||++|+.|+++.+.+++... ++.+....++....... ..+++|+|+||++|.+++.. ....+.++
T Consensus 94 -~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 94 -KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred -CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 25579999999999999999999988764 56777777766543221 34579999999999998865 45667899
Q ss_pred EEEEEcccchhhc-CCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEe
Q 039378 330 SFVVLDEADRMLD-MGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVL 408 (600)
Q Consensus 330 ~~lViDEah~l~~-~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 408 (600)
++|||||||++.+ .++...+..++..++...|+++||||++..+..+...++ ..+..+....... ....+.+.+...
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~ 247 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV-PDPNVIKLKREEE-TLDTIKQYYVLC 247 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHS-SSCEEECCCGGGS-SCTTEEEEEEEC
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhc-CCCeEEeeccccc-cccCceEEEEEc
Confidence 9999999999987 678888888999998899999999999999999888888 5666665544332 333444544444
Q ss_pred cC-cchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc
Q 039378 409 DD-RSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD 487 (600)
Q Consensus 409 ~~-~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~ 487 (600)
.. ..+...+..++.. ...+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|..+|||||+
T Consensus 248 ~~~~~~~~~l~~~~~~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 324 (412)
T 3fht_A 248 SSRDEKFQALCNLYGA---ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 324 (412)
T ss_dssp SSHHHHHHHHHHHHHH---HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred CChHHHHHHHHHHHhh---cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 33 2333444444443 3467999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcCEEEEcCCCC------ChhhHHHHhhhccCCCCccEEEEEEcCCc-HhHHHHHHHHHHHhcCCC
Q 039378 488 VAARGLDIPDVEVVINYSFPL------TTEDYVHRIGRTGRAGKKGVSHTFFTNHN-KALAGELVNVLREARQVV 555 (600)
Q Consensus 488 ~~~~Gldi~~v~~VI~~d~p~------s~~~y~qr~GR~gR~g~~g~~~~~~~~~d-~~~~~~i~~~l~~~~~~i 555 (600)
++++|+|+|++++||+||+|+ +...|+||+||+||.|+.|.|++|++..+ ...+..+.+.+......+
T Consensus 325 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 399 (412)
T 3fht_A 325 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 399 (412)
T ss_dssp GGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC
T ss_pred ccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccC
Confidence 999999999999999999995 56899999999999999999999998765 566666666665433333
No 11
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.8e-53 Score=463.95 Aligned_cols=358 Identities=29% Similarity=0.446 Sum_probs=292.7
Q ss_pred CCCHHHHHhhc--CCCCCcHHHHHHhhhhh--cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEc
Q 039378 186 KLPDDVLGCCK--NFKNPSPIQSHAWPFLL--NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLS 261 (600)
Q Consensus 186 ~l~~~l~~~~~--~~~~~~~~Q~~~i~~il--~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~ 261 (600)
.+++.++..+. ||..|+|+|.++|+.++ .++|+|++||||+|||++|++|++..+...... ...++++|||+
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~----~~~~~~~lil~ 153 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD----SQYMVKAVIVA 153 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS----STTSCCEEEEC
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc----ccCCeeEEEEc
Confidence 39999999886 89999999999999999 678999999999999999999999998876432 22356799999
Q ss_pred ccHHHHHHHHHHHHHhcC----CCCceEEEEeCCCChHHHHHHH-hcCCcEEEEchHHHHHHHHcc-CCCccceEEEEEc
Q 039378 262 PTRELADQIYDVLNDAGK----PCGVKSVCVYGGTSKQPQITAL-RSGVDIVIGTPGRLIDLIEMN-VCHLSEVSFVVLD 335 (600)
Q Consensus 262 Ptr~La~q~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~l-~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~lViD 335 (600)
||++||.|+++.+..+.. ...+.+..++||.....+...+ ..+++|+|+||++|.+++.+. ...+..+++||||
T Consensus 154 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 233 (563)
T 3i5x_A 154 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 233 (563)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred CcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEe
Confidence 999999999999998642 1246678889998877776666 347999999999999988754 3357889999999
Q ss_pred ccchhhcCCChHHHHHHHHhcC-------cCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcc---cccCCCeeEEE
Q 039378 336 EADRMLDMGFEEPVRFILSKIS-------LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSED---LAANHDVMQIV 405 (600)
Q Consensus 336 Eah~l~~~~~~~~~~~il~~~~-------~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~ 405 (600)
|||+|++++|...+..++..++ ...|+++||||++..+..+...++ ..+..+.+.... ......+.+..
T Consensus 234 Eah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (563)
T 3i5x_A 234 EADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIM-NKKECLFLDTVDKNEPEAHERIDQSV 312 (563)
T ss_dssp THHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTC-CSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred CHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhc-CCCceEEEeccCCCCccccccCceEE
Confidence 9999999999999988877653 256899999999999988888877 445444433221 12223344444
Q ss_pred EEecCc-chHHHHHHHH-HHHhh-cCCCeEEEEEeehhcHHHHHHHHHhC---CCeEEEEcCCCCHHHHHHHHHHHhcCC
Q 039378 406 EVLDDR-SRDQRLLALL-EKYHK-SQRNRVLVFALYQLEADRLENMLRRS---GWKVVAIHGKKAQHERTKSLSLFKEGT 479 (600)
Q Consensus 406 ~~~~~~-~~~~~l~~~l-~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~r~~~~~~F~~g~ 479 (600)
...... .....++..+ ..+.. ....++||||+++..+..++..|... ++.+..+||+|++.+|..+++.|++|.
T Consensus 313 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~ 392 (563)
T 3i5x_A 313 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE 392 (563)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS
T ss_pred EECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCC
Confidence 444332 2222222222 22222 34679999999999999999999886 899999999999999999999999999
Q ss_pred CCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHH
Q 039378 480 CPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVL 548 (600)
Q Consensus 480 ~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l 548 (600)
..|||||+++++|||+|++++||+||+|.++..|+||+|||||.|+.|.|++|+++.+...++.+.+..
T Consensus 393 ~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 393 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp SEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred CCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999988887776554
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.1e-55 Score=470.91 Aligned_cols=360 Identities=30% Similarity=0.471 Sum_probs=170.6
Q ss_pred ccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcC--CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCC
Q 039378 177 KALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKR 252 (600)
Q Consensus 177 ~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~--~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~ 252 (600)
..+.+|.+++|++.++..+. ||..|+|+|.++|+.++.+ +++|++||||||||++|++|++..+....
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~-------- 160 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-------- 160 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS--------
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC--------
Confidence 45678999999999999887 9999999999999999987 89999999999999999999987664332
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHc-cCCCccceE
Q 039378 253 VNPLCLVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEM-NVCHLSEVS 330 (600)
Q Consensus 253 ~~~~~liv~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~~~ 330 (600)
.++++|||+||++|+.|+++.+..++... ++.+....++...... ...+++|+|+||++|.+++.+ ..+.+.+++
T Consensus 161 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~ 237 (479)
T 3fmp_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIK 237 (479)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCC
T ss_pred CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCC
Confidence 25679999999999999999999987654 4666667666543322 133579999999999998865 456679999
Q ss_pred EEEEcccchhhc-CCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEec
Q 039378 331 FVVLDEADRMLD-MGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD 409 (600)
Q Consensus 331 ~lViDEah~l~~-~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 409 (600)
+|||||||++++ +++...+..++..++..+|+++||||++..+..+...++ ..+..+........ ...+.+.+..+.
T Consensus 238 ~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~~~~~~~~~~ 315 (479)
T 3fmp_B 238 VFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV-PDPNVIKLKREEET-LDTIKQYYVLCS 315 (479)
T ss_dssp EEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHS-SSEEEEEEC------------------
T ss_pred EEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHc-CCCeEEeccccccC-cCCceEEEEEeC
Confidence 999999999987 678888888888888899999999999999999988888 66776666554322 222333333332
Q ss_pred C-cchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccc
Q 039378 410 D-RSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDV 488 (600)
Q Consensus 410 ~-~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~ 488 (600)
. ..+...+..++.. ...+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|..+|||||++
T Consensus 316 ~~~~~~~~l~~~~~~---~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~ 392 (479)
T 3fmp_B 316 SRDEKFQALCNLYGA---ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV 392 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhh---ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccc
Confidence 2 2333334444333 24578999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcCEEEEcCCCC------ChhhHHHHhhhccCCCCccEEEEEEcCCc-HhHHHHHHHHHHHhc
Q 039378 489 AARGLDIPDVEVVINYSFPL------TTEDYVHRIGRTGRAGKKGVSHTFFTNHN-KALAGELVNVLREAR 552 (600)
Q Consensus 489 ~~~Gldi~~v~~VI~~d~p~------s~~~y~qr~GR~gR~g~~g~~~~~~~~~d-~~~~~~i~~~l~~~~ 552 (600)
+++|||+|++++||+||+|+ +...|+||+||+||.|+.|.|++|+++.+ ...+..|.+.+....
T Consensus 393 ~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~ 463 (479)
T 3fmp_B 393 CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKI 463 (479)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCc
Confidence 99999999999999999995 56899999999999999999999998765 556666666554433
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.5e-53 Score=442.63 Aligned_cols=354 Identities=31% Similarity=0.539 Sum_probs=294.6
Q ss_pred cccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcC--CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCC
Q 039378 178 ALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRV 253 (600)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~--~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~ 253 (600)
...+|.++++++.+++.+. ||..|+|+|.++++.++.+ +++++++|||+|||++|++|++..+.... .
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~ 74 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED--------A 74 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC--------C
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC--------C
Confidence 3578999999999999987 8999999999999999998 89999999999999999999888764332 2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEE
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVV 333 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 333 (600)
++++|||+||++|+.|+++.+.+++...++.+...+++...... ..+++|+|+||++|...+......+.++++||
T Consensus 75 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 150 (395)
T 3pey_A 75 SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFV 150 (395)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEE
T ss_pred CccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEE
Confidence 55689999999999999999999998888888888877544322 23589999999999999988877899999999
Q ss_pred Ecccchhhc-CCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCc-
Q 039378 334 LDEADRMLD-MGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDR- 411 (600)
Q Consensus 334 iDEah~l~~-~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~- 411 (600)
+||||++.+ .++...+..++..++...|+++||||++..+..+...++ ..+..+....... ....+.+.+......
T Consensus 151 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 228 (395)
T 3pey_A 151 LDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIV-PNANTLELQTNEV-NVDAIKQLYMDCKNEA 228 (395)
T ss_dssp EETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHS-CSCEEECCCGGGC-SCTTEEEEEEECSSHH
T ss_pred EEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhC-CCCeEEEcccccc-ccccccEEEEEcCchH
Confidence 999999988 677788888888888899999999999999998888887 5555554443332 223344444444332
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecccccc
Q 039378 412 SRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAAR 491 (600)
Q Consensus 412 ~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~ 491 (600)
.+...+..+ +.....+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++
T Consensus 229 ~~~~~l~~~---~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 305 (395)
T 3pey_A 229 DKFDVLTEL---YGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLAR 305 (395)
T ss_dssp HHHHHHHHH---HTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSS
T ss_pred HHHHHHHHH---HHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhc
Confidence 222222222 22334689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCEEEEcCCCC------ChhhHHHHhhhccCCCCccEEEEEEcCCcH-hHHHHHHHHH
Q 039378 492 GLDIPDVEVVINYSFPL------TTEDYVHRIGRTGRAGKKGVSHTFFTNHNK-ALAGELVNVL 548 (600)
Q Consensus 492 Gldi~~v~~VI~~d~p~------s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~-~~~~~i~~~l 548 (600)
|+|+|++++||+||+|+ ++..|+||+||+||.|+.|.|++|+...+. .....+...+
T Consensus 306 Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 369 (395)
T 3pey_A 306 GIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 369 (395)
T ss_dssp SCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHT
T ss_pred CCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHh
Confidence 99999999999999999 999999999999999999999999987554 3444444443
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3e-51 Score=418.60 Aligned_cols=333 Identities=35% Similarity=0.573 Sum_probs=281.1
Q ss_pred CCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccH
Q 039378 187 LPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTR 264 (600)
Q Consensus 187 l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr 264 (600)
+++.+.+.+. ||..|+|+|.++++.+++++++++++|||+|||++|++|++.. ++++|||+|++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------------~~~~liv~P~~ 66 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------------GMKSLVVTPTR 66 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------------TCCEEEECSSH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------------cCCEEEEeCCH
Confidence 4567777776 8999999999999999999999999999999999999998763 33489999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCC
Q 039378 265 ELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMG 344 (600)
Q Consensus 265 ~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~ 344 (600)
+|+.|+++.+.+++...++.+..++|+.........+.. ++|+|+||++|.+.+......+.++++||+||||++.+++
T Consensus 67 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~ 145 (337)
T 2z0m_A 67 ELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG 145 (337)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccc
Confidence 999999999999998888899999999887776665554 8999999999999988877778999999999999999999
Q ss_pred ChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHH
Q 039378 345 FEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKY 424 (600)
Q Consensus 345 ~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 424 (600)
+...+..++...+...++++||||++..+......++ ..+..+... .......+.+.......+ ... ..+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~---~~~ 215 (337)
T 2z0m_A 146 FIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFI-TNYEEIEAC----IGLANVEHKFVHVKDDWR--SKV---QAL 215 (337)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHS-CSCEEEECS----GGGGGEEEEEEECSSSSH--HHH---HHH
T ss_pred cHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhc-CCceeeecc----cccCCceEEEEEeChHHH--HHH---HHH
Confidence 9999999999998889999999999999988888887 444444322 122233344333333222 222 333
Q ss_pred hhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEc
Q 039378 425 HKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINY 504 (600)
Q Consensus 425 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~ 504 (600)
.....+++||||+++..+..++..|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|
T Consensus 216 ~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~ 291 (337)
T 2z0m_A 216 RENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINF 291 (337)
T ss_dssp HTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEES
T ss_pred HhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEe
Confidence 34557899999999999999998886 58899999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHH
Q 039378 505 SFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLR 549 (600)
Q Consensus 505 d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~ 549 (600)
++|+++..|+||+||+||.|+.|.|++|+. .+....+.+.+.+.
T Consensus 292 ~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 292 DAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp SCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred cCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 999999999999999999999999999999 78777777766654
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=5.3e-51 Score=442.07 Aligned_cols=341 Identities=18% Similarity=0.258 Sum_probs=270.3
Q ss_pred cccCCCCHHHHHhhc---CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEE
Q 039378 182 FTESKLPDDVLGCCK---NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCL 258 (600)
Q Consensus 182 ~~~~~l~~~l~~~~~---~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~l 258 (600)
+.++++++.+...++ ||..|+|+|.++|+.+++|+|+++.+|||+|||++|++|++.. .+++|
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------------~g~~l 88 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------------DGFTL 88 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------------SSEEE
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------------CCcEE
Confidence 345778888888776 8899999999999999999999999999999999999998752 34689
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHH---H---hcCCcEEEEchHHHH------HHHHccCCCc
Q 039378 259 VLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITA---L---RSGVDIVIGTPGRLI------DLIEMNVCHL 326 (600)
Q Consensus 259 iv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---l---~~~~~Iiv~Tp~~l~------~~l~~~~~~l 326 (600)
||+|+++|+.|+.+.+..+ ++.+..+.++......... + ..+++|+|+||++|. +.+.. ...+
T Consensus 89 VisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~ 163 (591)
T 2v1x_A 89 VICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEA 163 (591)
T ss_dssp EECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHT
T ss_pred EEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhc
Confidence 9999999999999999998 4778888888776544322 2 346899999999874 22222 3346
Q ss_pred cceEEEEEcccchhhcCC--ChHHHHH--HHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCee
Q 039378 327 SEVSFVVLDEADRMLDMG--FEEPVRF--ILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVM 402 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~--~~~~~~~--il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 402 (600)
.++++|||||||++.+|| |...+.. ++....+..++++||||+++.+...+..++............. ..++.
T Consensus 164 ~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~---r~nl~ 240 (591)
T 2v1x_A 164 RRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFN---RPNLY 240 (591)
T ss_dssp TCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCC---CTTEE
T ss_pred cCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCC---CcccE
Confidence 789999999999999988 5555443 3444445689999999999998887777775443333332211 11222
Q ss_pred EEEEEecCcchHHHHHHHHHHHhh-cCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCC
Q 039378 403 QIVEVLDDRSRDQRLLALLEKYHK-SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCP 481 (600)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~ 481 (600)
..+ ..........+..++..+.. ..+.++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|+.|..+
T Consensus 241 ~~v-~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~ 319 (591)
T 2v1x_A 241 YEV-RQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQ 319 (591)
T ss_dssp EEE-EECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSS
T ss_pred EEE-EeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe
Confidence 221 22222223333334443332 2467999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHH
Q 039378 482 LMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELV 545 (600)
Q Consensus 482 vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~ 545 (600)
|||||+++++|||+|+|++||+|++|.|+..|+||+|||||.|++|.|++||++.|...+..++
T Consensus 320 VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 320 VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998876655543
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.1e-49 Score=427.82 Aligned_cols=341 Identities=18% Similarity=0.291 Sum_probs=270.3
Q ss_pred ccccccCCCCHHHHHhhc---CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCc
Q 039378 179 LKSFTESKLPDDVLGCCK---NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255 (600)
Q Consensus 179 ~~~~~~~~l~~~l~~~~~---~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~ 255 (600)
+.+|+++++++.+...+. ||..|+|+|.++|+.+++|+|+++.+|||+|||++|++|++.. .+
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------------~g 66 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------------NG 66 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--------------SS
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--------------CC
Confidence 357889999999888776 8899999999999999999999999999999999999998742 23
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHH---HH-hcCCcEEEEchHHHHHHHHccCCCccceEE
Q 039378 256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQIT---AL-RSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331 (600)
Q Consensus 256 ~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~l-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~ 331 (600)
.+|||+|+++|+.|+.+.+..+ ++.+..+.++........ .+ ...++|+|+||++|........+...++++
T Consensus 67 ~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~ 142 (523)
T 1oyw_A 67 LTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVL 142 (523)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEE
T ss_pred CEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCE
Confidence 4799999999999999999986 467777777766544322 22 345899999999995322112233478999
Q ss_pred EEEcccchhhcCC--ChHHHHH---HHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEE
Q 039378 332 VVLDEADRMLDMG--FEEPVRF---ILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVE 406 (600)
Q Consensus 332 lViDEah~l~~~~--~~~~~~~---il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 406 (600)
|||||||++.+|| |...+.. +...+ +..++++||||++..+...+...+......+...... ..++ .+.
T Consensus 143 vViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~~l--~~~ 216 (523)
T 1oyw_A 143 LAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD---RPNI--RYM 216 (523)
T ss_dssp EEESSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCC---CTTE--EEE
T ss_pred EEEeCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCC---CCce--EEE
Confidence 9999999999987 5444443 33333 3578999999999887664444443333333333221 1122 222
Q ss_pred EecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEec
Q 039378 407 VLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT 486 (600)
Q Consensus 407 ~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT 486 (600)
......+...+..++... .++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||
T Consensus 217 v~~~~~~~~~l~~~l~~~---~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT 293 (523)
T 1oyw_A 217 LMEKFKPLDQLMRYVQEQ---RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT 293 (523)
T ss_dssp EEECSSHHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred EEeCCCHHHHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 333344555566555543 46799999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHH
Q 039378 487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546 (600)
Q Consensus 487 ~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~ 546 (600)
+++++|||+|++++||+|++|.|+..|+||+||+||.|++|.|++|+++.|....+.++.
T Consensus 294 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 294 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred chhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988776655543
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.1e-51 Score=438.33 Aligned_cols=363 Identities=29% Similarity=0.478 Sum_probs=252.1
Q ss_pred cccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcC--CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCC
Q 039378 178 ALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRV 253 (600)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~--~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~ 253 (600)
.+..+...++++.++..+. ||..|+++|.++++.++++ +++++++|||||||++|++|++..+.... .
T Consensus 117 ~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~--------~ 188 (508)
T 3fho_A 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV--------P 188 (508)
T ss_dssp ----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC--------C
T ss_pred ccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC--------C
Confidence 3445666677888877775 8889999999999999998 89999999999999999999888764432 2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEE
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVV 333 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 333 (600)
++++|||+|+++|+.|+++.+.+++...++.+...+++..... ...+++|+|+||++|...+......+.++++||
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lII 264 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFV 264 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEE
Confidence 4569999999999999999999998877776666655543322 233589999999999999988877889999999
Q ss_pred Ecccchhhc-CCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEe-cCc
Q 039378 334 LDEADRMLD-MGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVL-DDR 411 (600)
Q Consensus 334 iDEah~l~~-~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~ 411 (600)
|||||++.+ .++...+..++..++...|++++|||++..+..+...++ ..+..+.......... .+.+.+... ...
T Consensus 265 iDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~ 342 (508)
T 3fho_A 265 LDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFA-PNANEIRLKTEELSVE-GIKQLYMDCQSEE 342 (508)
T ss_dssp ECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHS-TTCEEECCCCCC-----CCCCEEEEC--CH
T ss_pred EechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhc-CCCeEEEeccccCCcc-cceEEEEECCchH
Confidence 999999987 678888889999999899999999999999998888887 5565555444332222 222333332 233
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecccccc
Q 039378 412 SRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAAR 491 (600)
Q Consensus 412 ~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~ 491 (600)
.+...+..++.. ...+++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++
T Consensus 343 ~k~~~l~~ll~~---~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~ 419 (508)
T 3fho_A 343 HKYNVLVELYGL---LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIAR 419 (508)
T ss_dssp HHHHHHHHHHC------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC----
T ss_pred HHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhc
Confidence 333334443333 34679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCEEEEcCCC------CChhhHHHHhhhccCCCCccEEEEEEcC-CcHhHHHHHHHHHHHhcCCCcH
Q 039378 492 GLDIPDVEVVINYSFP------LTTEDYVHRIGRTGRAGKKGVSHTFFTN-HNKALAGELVNVLREARQVVPD 557 (600)
Q Consensus 492 Gldi~~v~~VI~~d~p------~s~~~y~qr~GR~gR~g~~g~~~~~~~~-~d~~~~~~i~~~l~~~~~~ip~ 557 (600)
|+|+|++++||+||+| .++..|+||+||+||.|+.|.|++|+.. .+...+..+.+.+......+|.
T Consensus 420 GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp -CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred CCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 9999999999999999 7899999999999999999999999985 4556667776666544444443
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.4e-48 Score=410.26 Aligned_cols=317 Identities=23% Similarity=0.308 Sum_probs=257.9
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
+| .|+|+|.++++.+++++|+++++|||+|||++|++|++..+. .++++|||+||++|+.|+++.+..
T Consensus 19 ~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-----------~~~~~lil~Pt~~L~~q~~~~~~~ 86 (414)
T 3oiy_A 19 GK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----------KGKKSALVFPTVTLVKQTLERLQK 86 (414)
T ss_dssp SS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-----------TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-----------CCCEEEEEECCHHHHHHHHHHHHH
Confidence 66 799999999999999999999999999999999988776541 145689999999999999999999
Q ss_pred hcCCCCceEEEEeCCCCh---HHHHHHHhcC-CcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhc----------
Q 039378 277 AGKPCGVKSVCVYGGTSK---QPQITALRSG-VDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLD---------- 342 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~---~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~---------- 342 (600)
++. .++++..++|+... ..+...+..+ ++|+|+||++|.+++.. ..+.++++|||||||++..
T Consensus 87 ~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~ 163 (414)
T 3oiy_A 87 LAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLM 163 (414)
T ss_dssp HCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHH
T ss_pred Hcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHh
Confidence 988 78999999999887 5556666666 99999999999887764 5577899999999987653
Q ss_pred -CCChHH-HHHHHHhcC-----------cCCcEEEEecc-CChhHH-HHHHHhcCCCCeEEEECCcccccCCCeeEEEEE
Q 039378 343 -MGFEEP-VRFILSKIS-----------LARQMVMFSAT-WPIEVH-KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEV 407 (600)
Q Consensus 343 -~~~~~~-~~~il~~~~-----------~~~q~i~~SAT-l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 407 (600)
++|... +..++..++ ...|+++|||| +|..+. .+...++... +... ......+.+.+..
T Consensus 164 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~i~~~~~~ 237 (414)
T 3oiy_A 164 MVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFT-----VGRL-VSVARNITHVRIS 237 (414)
T ss_dssp HTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCC-----SSCC-CCCCCSEEEEEES
T ss_pred hcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccC-----cCcc-ccccccchheeec
Confidence 677777 788888776 77899999999 565544 3333333211 1111 1122233333332
Q ss_pred ecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEE-EEcCCCCHHHHHHHHHHHhcCCCCEEEe-
Q 039378 408 LDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVV-AIHGKKAQHERTKSLSLFKEGTCPLMVA- 485 (600)
Q Consensus 408 ~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~-~l~~~~~~~~r~~~~~~F~~g~~~vLva- 485 (600)
. .+...+..++... ++++||||+++..+..++..|...++.+. .+||. +|. ++.|++|.++||||
T Consensus 238 ~---~~~~~l~~~l~~~----~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat 304 (414)
T 3oiy_A 238 S---RSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGV 304 (414)
T ss_dssp S---CCHHHHHHHHHHH----CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEE
T ss_pred c---CHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEe
Confidence 2 4566666666663 58999999999999999999999999998 99985 444 99999999999999
Q ss_pred ---ccccccCCCCCC-cCEEEEcCCC--CChhhHHHHhhhccCCC----CccEEEEEEcCCcHhHHHHHHHHHH
Q 039378 486 ---TDVAARGLDIPD-VEVVINYSFP--LTTEDYVHRIGRTGRAG----KKGVSHTFFTNHNKALAGELVNVLR 549 (600)
Q Consensus 486 ---T~~~~~Gldi~~-v~~VI~~d~p--~s~~~y~qr~GR~gR~g----~~g~~~~~~~~~d~~~~~~i~~~l~ 549 (600)
|+++++|||+|+ +++||+||+| .++..|+||+||+||.| +.|.+++|+ .+...+..+...+.
T Consensus 305 ~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 305 QAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp CCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred cCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999988 589999999 67777788887777
No 19
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-49 Score=452.35 Aligned_cols=330 Identities=18% Similarity=0.222 Sum_probs=259.1
Q ss_pred ccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEE
Q 039378 181 SFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCL 258 (600)
Q Consensus 181 ~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~l 258 (600)
.|..+++++.+...+. .+..|+|+|.++|+.+++++++|++||||||||++|++|++..+.. ++++|
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-----------g~rvl 231 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRVI 231 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-----------TCEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-----------CCeEE
Confidence 4566666665554443 4557999999999999999999999999999999999998887633 44689
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccc
Q 039378 259 VLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEAD 338 (600)
Q Consensus 259 iv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah 338 (600)
|++||++|+.|+++.+..++. .+.+++|+.... .+++|+|+||++|.+++......+.++++|||||||
T Consensus 232 vl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH 300 (1108)
T 3l9o_A 232 YTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH 300 (1108)
T ss_dssp EEESSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG
T ss_pred EEcCcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh
Confidence 999999999999999999875 456677776533 348999999999999998887778999999999999
Q ss_pred hhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhH--HHHHHHhcCCCCeEEEECCcccccCCCeeEEEEE---------
Q 039378 339 RMLDMGFEEPVRFILSKISLARQMVMFSATWPIEV--HKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEV--------- 407 (600)
Q Consensus 339 ~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------- 407 (600)
++.+++++..+..++..++...|+|+||||+|... ..+..... ..+..+....... ..+.+++..
T Consensus 301 ~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~-~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~ 376 (1108)
T 3l9o_A 301 YMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIH-SQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLV 376 (1108)
T ss_dssp GTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHT-CSCEEEEEECCCS---SCEEEEEEETTSSCCEEE
T ss_pred hccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhc-CCCeEEEecCCCc---ccceEEEeecCCcceeee
Confidence 99998899999999999999999999999998753 34444444 3444443332211 111221111
Q ss_pred ecCcc-------------------------------------------hHHHHHHHHHHHhhcCCCeEEEEEeehhcHHH
Q 039378 408 LDDRS-------------------------------------------RDQRLLALLEKYHKSQRNRVLVFALYQLEADR 444 (600)
Q Consensus 408 ~~~~~-------------------------------------------~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~ 444 (600)
..... ....+..++..+.....+++||||+++..++.
T Consensus 377 vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~ 456 (1108)
T 3l9o_A 377 VDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEE 456 (1108)
T ss_dssp EETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHH
T ss_pred eccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHH
Confidence 00000 03445556666555566799999999999999
Q ss_pred HHHHHHhCCCe---------------------------------------EEEEcCCCCHHHHHHHHHHHhcCCCCEEEe
Q 039378 445 LENMLRRSGWK---------------------------------------VVAIHGKKAQHERTKSLSLFKEGTCPLMVA 485 (600)
Q Consensus 445 l~~~L~~~~~~---------------------------------------~~~l~~~~~~~~r~~~~~~F~~g~~~vLva 485 (600)
++..|...++. +..+||+|++.+|..+++.|++|.++||||
T Consensus 457 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVA 536 (1108)
T 3l9o_A 457 LALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFA 536 (1108)
T ss_dssp HHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 99988653222 799999999999999999999999999999
Q ss_pred ccccccCCCCCCcCEEEEcCCCC--------ChhhHHHHhhhccCCC--CccEEEEEEcCC
Q 039378 486 TDVAARGLDIPDVEVVINYSFPL--------TTEDYVHRIGRTGRAG--KKGVSHTFFTNH 536 (600)
Q Consensus 486 T~~~~~Gldi~~v~~VI~~d~p~--------s~~~y~qr~GR~gR~g--~~g~~~~~~~~~ 536 (600)
|+++++|||+|++++||+++.|+ ++..|+||+|||||.| ..|.|++++++.
T Consensus 537 T~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 537 TETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp ESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999999999999999887644 5667999999999999 679999998876
No 20
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7.1e-47 Score=413.14 Aligned_cols=334 Identities=18% Similarity=0.191 Sum_probs=201.1
Q ss_pred CCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 198 ~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
...|+|+|.++++.++.++++++++|||+|||++|++|++..+...+. ..++++|||+||++|+.||.+.+..+
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc------cCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999999999999888766532 22556899999999999999999999
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCC-CccceEEEEEcccchhhcCCChHHHH-HHHHh
Q 039378 278 GKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC-HLSEVSFVVLDEADRMLDMGFEEPVR-FILSK 355 (600)
Q Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~lViDEah~l~~~~~~~~~~-~il~~ 355 (600)
+...++.+..++|+.........+..+++|+|+||++|.+++..... .+.++++|||||||++.+++....+. ..+..
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 79 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp HGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred hcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 88778999999999877766666666799999999999999988776 78999999999999998875332221 11111
Q ss_pred -c---CcCCcEEEEeccCCh-----------hHHHHHHHhcC-----------------CCCeEEEECCcc-cccC----
Q 039378 356 -I---SLARQMVMFSATWPI-----------EVHKLAEEYMD-----------------PNPVKVVVGSED-LAAN---- 398 (600)
Q Consensus 356 -~---~~~~q~i~~SATl~~-----------~~~~~~~~~~~-----------------~~~~~i~~~~~~-~~~~---- 398 (600)
+ ....|+++||||++. .+..+...+.. ..+......... ....
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 1 345789999999853 11112111110 111111100000 0000
Q ss_pred ---------------CCeeEEEEE--------------------------------------------------------
Q 039378 399 ---------------HDVMQIVEV-------------------------------------------------------- 407 (600)
Q Consensus 399 ---------------~~~~~~~~~-------------------------------------------------------- 407 (600)
.........
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000000000
Q ss_pred -------------------------------------------------ecCcchHHHHHHHHHHHh-hcCCCeEEEEEe
Q 039378 408 -------------------------------------------------LDDRSRDQRLLALLEKYH-KSQRNRVLVFAL 437 (600)
Q Consensus 408 -------------------------------------------------~~~~~~~~~l~~~l~~~~-~~~~~~~lVF~~ 437 (600)
.....+...+..++.... .....++||||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 001223333444443322 144689999999
Q ss_pred ehhcHHHHHHHHHhC------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCCEEEeccccccCCCCCCcCEEEEc
Q 039378 438 YQLEADRLENMLRRS------------GWKVVAIHGKKAQHERTKSLSLFKE-GTCPLMVATDVAARGLDIPDVEVVINY 504 (600)
Q Consensus 438 s~~~~~~l~~~L~~~------------~~~~~~l~~~~~~~~r~~~~~~F~~-g~~~vLvaT~~~~~Gldi~~v~~VI~~ 504 (600)
++.+++.|+..|... |.....+||+|++.+|..+++.|++ |.++|||||+++++|||+|++++||+|
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 478 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEE
T ss_pred cHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999875 5566677888999999999999999 999999999999999999999999999
Q ss_pred CCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHh
Q 039378 505 SFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539 (600)
Q Consensus 505 d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~ 539 (600)
|+|+|+..|+||+|| ||. +.|.+++|++..+..
T Consensus 479 d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 479 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp TCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999 999 799999999987653
No 21
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.1e-46 Score=403.98 Aligned_cols=336 Identities=20% Similarity=0.218 Sum_probs=255.9
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
|| .|||+|..++|.++.|+ |+.++||+|||++|++|++...+. ++.|+||+||++||.|..+++..
T Consensus 81 G~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-----------g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 81 GM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-----------GKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp SC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred CC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 89 99999999999999998 999999999999999999865443 33489999999999999999999
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHH-HHHHHcc------CCCccceEEEEEcccchhh-cCC----
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL-IDLIEMN------VCHLSEVSFVVLDEADRML-DMG---- 344 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~~~~lViDEah~l~-~~~---- 344 (600)
++..+++++.+++||.+...+ ....+++|+|+||++| .+++..+ .+.++.+.++||||||+|+ +.+
T Consensus 147 l~~~lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 147 IFEFLGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHHTTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred HHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 998899999999999876543 3344699999999999 6666543 3567889999999999998 654
Q ss_pred -----------ChHHHHHHHHhcC---------cCCcEE-----------------EEeccCChhHHHH-----HHHhcC
Q 039378 345 -----------FEEPVRFILSKIS---------LARQMV-----------------MFSATWPIEVHKL-----AEEYMD 382 (600)
Q Consensus 345 -----------~~~~~~~il~~~~---------~~~q~i-----------------~~SATl~~~~~~~-----~~~~~~ 382 (600)
|...+..++..++ ..+|++ +||||++..+..+ +..++.
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 4567888888886 367887 8999987433322 222332
Q ss_pred CCCeEEE-------ECCc----------------------ccccCC----------------------------------
Q 039378 383 PNPVKVV-------VGSE----------------------DLAANH---------------------------------- 399 (600)
Q Consensus 383 ~~~~~i~-------~~~~----------------------~~~~~~---------------------------------- 399 (600)
.+...++ +... ......
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 2222221 1000 000000
Q ss_pred ---------------Cee----EEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEc
Q 039378 400 ---------------DVM----QIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIH 460 (600)
Q Consensus 400 ---------------~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~ 460 (600)
... ..........+...+...+..... .+.++||||+|+..++.|+..|...|+++..||
T Consensus 385 ~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~-~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLh 463 (844)
T 1tf5_A 385 RNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYM-TGQPVLVGTVAVETSELISKLLKNKGIPHQVLN 463 (844)
T ss_dssp HHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH-HTCCEEEEESCHHHHHHHHHHHHTTTCCCEEEC
T ss_pred HHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEee
Confidence 000 001122333455555555544322 356899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCC--------CcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEE
Q 039378 461 GKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIP--------DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTF 532 (600)
Q Consensus 461 ~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~--------~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~ 532 (600)
|++.+.+|..+.+.|+.| .|+|||++++||+||+ ++.|||+|++|.+...|+||+|||||.|.+|.+++|
T Consensus 464 g~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~ 541 (844)
T 1tf5_A 464 AKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFY 541 (844)
T ss_dssp SSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred CCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEE
Confidence 999888887666666665 6999999999999999 888999999999999999999999999999999999
Q ss_pred EcCCcHhH----HHHHHHHHHHh
Q 039378 533 FTNHNKAL----AGELVNVLREA 551 (600)
Q Consensus 533 ~~~~d~~~----~~~i~~~l~~~ 551 (600)
++..|..+ ...+...+...
T Consensus 542 vs~eD~l~r~f~~~~~~~~~~~~ 564 (844)
T 1tf5_A 542 LSMEDELMRRFGAERTMAMLDRF 564 (844)
T ss_dssp EETTSSGGGSSHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHhHHHHHHHHHhc
Confidence 99888532 23455555543
No 22
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.9e-46 Score=408.17 Aligned_cols=334 Identities=18% Similarity=0.194 Sum_probs=230.0
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+|+|.++++.++.++++|+++|||+|||++|++|++..+...+. ..++++|||+||++|+.||++.+..++.
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~~~~~~~~~ 77 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC------GQKGKVVFFANQIPVYEQQATVFSRYFE 77 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc------CCCCEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 6999999999999999999999999999999999999888876532 2255689999999999999999999988
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCC-CccceEEEEEcccchhhcCCC-hHHHHHHHHhc-
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC-HLSEVSFVVLDEADRMLDMGF-EEPVRFILSKI- 356 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~lViDEah~l~~~~~-~~~~~~il~~~- 356 (600)
..++.+..++|+.........+..+++|+|+||++|..++..... .+.++++|||||||++.+.+. ...+...+...
T Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 157 (555)
T 3tbk_A 78 RLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKL 157 (555)
T ss_dssp TTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHT
T ss_pred cCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhh
Confidence 778999999999877766666666799999999999999987766 788999999999999987642 12222222221
Q ss_pred ----CcCCcEEEEeccCChh-----------HHHHHHHhcCCCCeEEEECCcc---c--ccCCCeeEEEEEe--------
Q 039378 357 ----SLARQMVMFSATWPIE-----------VHKLAEEYMDPNPVKVVVGSED---L--AANHDVMQIVEVL-------- 408 (600)
Q Consensus 357 ----~~~~q~i~~SATl~~~-----------~~~~~~~~~~~~~~~i~~~~~~---~--~~~~~~~~~~~~~-------- 408 (600)
....|+++||||++.. +..+. ..+. ...+...... . .............
T Consensus 158 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~-~~l~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 158 GESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLC-AALD--ASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp SSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHH-HHTT--CSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred ccccCCCCeEEEEecCcccCccccHHHHHHHHHHHH-HhcC--CeeeeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 2446899999998542 11111 1121 1111110000 0 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 039378 409 -------------------------------------------------------------------------------- 408 (600)
Q Consensus 409 -------------------------------------------------------------------------------- 408 (600)
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (555)
T 3tbk_A 235 CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDAL 314 (555)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------cCcchHHHHHHHHHHHh-hcCCCeEEE
Q 039378 409 -----------------------------------------------------DDRSRDQRLLALLEKYH-KSQRNRVLV 434 (600)
Q Consensus 409 -----------------------------------------------------~~~~~~~~l~~~l~~~~-~~~~~~~lV 434 (600)
....+...+..++.... ....+++||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lV 394 (555)
T 3tbk_A 315 IISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTIL 394 (555)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEE
Confidence 01223344444444332 234589999
Q ss_pred EEeehhcHHHHHHHHHhCC------------CeEEEEcCCCCHHHHHHHHHHHhc-CCCCEEEeccccccCCCCCCcCEE
Q 039378 435 FALYQLEADRLENMLRRSG------------WKVVAIHGKKAQHERTKSLSLFKE-GTCPLMVATDVAARGLDIPDVEVV 501 (600)
Q Consensus 435 F~~s~~~~~~l~~~L~~~~------------~~~~~l~~~~~~~~r~~~~~~F~~-g~~~vLvaT~~~~~Gldi~~v~~V 501 (600)
||+++.+++.++..|...+ .....+||+|++.+|..+++.|++ |.++|||||+++++|||+|++++|
T Consensus 395 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~V 474 (555)
T 3tbk_A 395 FVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLV 474 (555)
T ss_dssp ECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEE
T ss_pred EeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEE
Confidence 9999999999999998763 345566779999999999999999 999999999999999999999999
Q ss_pred EEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHH
Q 039378 502 INYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGEL 544 (600)
Q Consensus 502 I~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i 544 (600)
|+||+|+|+..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 475 I~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 475 ILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp EEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999 998 89999999998876554433
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.1e-45 Score=414.13 Aligned_cols=330 Identities=21% Similarity=0.287 Sum_probs=263.1
Q ss_pred ccccCCCCHHHHHhhc--CCCCCcHHHHHHhhh-hhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceE
Q 039378 181 SFTESKLPDDVLGCCK--NFKNPSPIQSHAWPF-LLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257 (600)
Q Consensus 181 ~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~-il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~ 257 (600)
+|.++++++.+...+. ||..|+|+|.++++. +..+++++++||||||||++|.+|++..+... +.++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~~ 71 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----------GGKA 71 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----------CSEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----------CCEE
Confidence 5889999999999886 899999999999998 88999999999999999999999999887643 3458
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEccc
Q 039378 258 LVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEA 337 (600)
Q Consensus 258 liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEa 337 (600)
+|++|+++|+.|+++.+.++.. .++++..++|+...... ...+++|+|+||++|..++......+.++++||||||
T Consensus 72 l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~ 147 (720)
T 2zj8_A 72 VYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEI 147 (720)
T ss_dssp EEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETG
T ss_pred EEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECC
Confidence 9999999999999999975543 47888888887654432 1235899999999999988876666899999999999
Q ss_pred chhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEE------EEec--
Q 039378 338 DRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIV------EVLD-- 409 (600)
Q Consensus 338 h~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~-- 409 (600)
|.+.++++...+..++..++...|+|+||||+++. ..+. .++... .+..... .......+ ....
T Consensus 148 H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~-~~l~~~--~~~~~~r----p~~l~~~~~~~~~~~~~~~~ 219 (720)
T 2zj8_A 148 HLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELA-EWLNAE--LIVSDWR----PVKLRRGVFYQGFVTWEDGS 219 (720)
T ss_dssp GGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHH-HHTTEE--EEECCCC----SSEEEEEEEETTEEEETTSC
T ss_pred cccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHH-HHhCCc--ccCCCCC----CCcceEEEEeCCeeeccccc
Confidence 99998889999999998887788999999999853 3333 444221 1111100 01111111 1111
Q ss_pred ---CcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC---------------------------------C
Q 039378 410 ---DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS---------------------------------G 453 (600)
Q Consensus 410 ---~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------------------------------~ 453 (600)
.......+...+ . .++++||||+++..+..++..|... .
T Consensus 220 ~~~~~~~~~~~~~~~----~-~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 294 (720)
T 2zj8_A 220 IDRFSSWEELVYDAI----R-KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR 294 (720)
T ss_dssp EEECSSTTHHHHHHH----H-TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHH----h-CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 112222222222 2 3689999999999999999988753 1
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEE----cC----CCCChhhHHHHhhhccCCC-
Q 039378 454 WKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVIN----YS----FPLTTEDYVHRIGRTGRAG- 524 (600)
Q Consensus 454 ~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d----~p~s~~~y~qr~GR~gR~g- 524 (600)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.++.+|+||+|||||.|
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~ 374 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKY 374 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTT
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCC
Confidence 24999999999999999999999999999999999999999999999998 77 6899999999999999988
Q ss_pred -CccEEEEEEcCCc
Q 039378 525 -KKGVSHTFFTNHN 537 (600)
Q Consensus 525 -~~g~~~~~~~~~d 537 (600)
..|.|+++++..+
T Consensus 375 ~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 375 DEVGEGIIVSTSDD 388 (720)
T ss_dssp CSEEEEEEECSSSC
T ss_pred CCCceEEEEecCcc
Confidence 4799999999887
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3e-46 Score=418.76 Aligned_cols=339 Identities=18% Similarity=0.196 Sum_probs=220.3
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
||..|+|+|.+++++++.|+|+|+++|||+|||++|++|++.++...+. ..++++|||+||++|+.||.+.+.+
T Consensus 10 g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~------~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 10 SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ------GQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp C--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT------TCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc------CCCCeEEEEECCHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999988766532 1235689999999999999999999
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCC-CccceEEEEEcccchhhcCCCh-HHHHHHHH
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC-HLSEVSFVVLDEADRMLDMGFE-EPVRFILS 354 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~lViDEah~l~~~~~~-~~~~~il~ 354 (600)
++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.... ..+...+.
T Consensus 84 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~ 163 (696)
T 2ykg_A 84 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLD 163 (696)
T ss_dssp HTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred HhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHH
Confidence 998788999999999876666666666799999999999999987766 6899999999999998865311 11111222
Q ss_pred h-----cCcCCcEEEEeccCC-------hh-HHHHHHH---------------------hcCCCCeEEEECCcccccC--
Q 039378 355 K-----ISLARQMVMFSATWP-------IE-VHKLAEE---------------------YMDPNPVKVVVGSEDLAAN-- 398 (600)
Q Consensus 355 ~-----~~~~~q~i~~SATl~-------~~-~~~~~~~---------------------~~~~~~~~i~~~~~~~~~~-- 398 (600)
. .....++++||||+. .. +..+... +. ..|.............
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~-~~p~~~~~~~~~~~~~~f 242 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVV-YKPQKFFRKVESRISDKF 242 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHS-CCCEEEEEECCCCSCCHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhc-CCCceeEEecCcccCChH
Confidence 1 235679999999986 11 1111111 11 1111111000000000
Q ss_pred -------------------C-----------------------------CeeEEEE------------------------
Q 039378 399 -------------------H-----------------------------DVMQIVE------------------------ 406 (600)
Q Consensus 399 -------------------~-----------------------------~~~~~~~------------------------ 406 (600)
. .......
T Consensus 243 s~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 322 (696)
T 2ykg_A 243 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 322 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHH
Confidence 0 0000000
Q ss_pred ------------------------------------E-------------e---cCcchHHHHHHHHHHHh-hcCCCeEE
Q 039378 407 ------------------------------------V-------------L---DDRSRDQRLLALLEKYH-KSQRNRVL 433 (600)
Q Consensus 407 ------------------------------------~-------------~---~~~~~~~~l~~~l~~~~-~~~~~~~l 433 (600)
. . ....+...+..++.... ...++++|
T Consensus 323 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~I 402 (696)
T 2ykg_A 323 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 402 (696)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred HhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEE
Confidence 0 0 02234444445554432 12467999
Q ss_pred EEEeehhcHHHHHHHHHhCC----CeEEEE--------cCCCCHHHHHHHHHHHhc-CCCCEEEeccccccCCCCCCcCE
Q 039378 434 VFALYQLEADRLENMLRRSG----WKVVAI--------HGKKAQHERTKSLSLFKE-GTCPLMVATDVAARGLDIPDVEV 500 (600)
Q Consensus 434 VF~~s~~~~~~l~~~L~~~~----~~~~~l--------~~~~~~~~r~~~~~~F~~-g~~~vLvaT~~~~~Gldi~~v~~ 500 (600)
|||+++.+++.|+..|...+ +.+..+ ||+|++.+|..+++.|++ |.++|||||+++++|||+|++++
T Consensus 403 IF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~ 482 (696)
T 2ykg_A 403 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 482 (696)
T ss_dssp EECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSE
T ss_pred EEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCE
Confidence 99999999999999999987 888888 559999999999999998 99999999999999999999999
Q ss_pred EEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHH
Q 039378 501 VINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGEL 544 (600)
Q Consensus 501 VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i 544 (600)
||+||+|+++..|+||+|| ||. +.|.++.+++..+......+
T Consensus 483 VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 483 VILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp EEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 9999999999999999999 998 68999999998776544444
No 25
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.7e-45 Score=409.08 Aligned_cols=335 Identities=23% Similarity=0.280 Sum_probs=259.0
Q ss_pred cccccCCCCHHHHHhhc--CCCCCcHHHHHHhhh-hhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCce
Q 039378 180 KSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPF-LLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPL 256 (600)
Q Consensus 180 ~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~-il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~ 256 (600)
.+|.++++++.+...+. ||..|+|+|.++++. +..+++++++||||||||++|.+|++..+... +.+
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~ 77 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----------GGK 77 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----------CSE
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----------CCe
Confidence 46899999999999886 899999999999999 77889999999999999999999999887643 346
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcc
Q 039378 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDE 336 (600)
Q Consensus 257 ~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDE 336 (600)
++|++|+|+||.|+++.+..+. ..++++...+|+....... ..+++|+|+||++|..++......+.++++|||||
T Consensus 78 il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE 153 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDE 153 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECS
T ss_pred EEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEec
Confidence 8999999999999999996554 3478888888876554321 23589999999999998887766689999999999
Q ss_pred cchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEE------------
Q 039378 337 ADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQI------------ 404 (600)
Q Consensus 337 ah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------ 404 (600)
||.+.+.++...+..++..++ ..|+|+||||+++. ..+.. ++.. +. +...... ..+...
T Consensus 154 ~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~-~l~~-~~-~~~~~r~----~~l~~~~~~~~~~~~~~~ 224 (715)
T 2va8_A 154 LHYLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAK-WLGA-EP-VATNWRP----VPLIEGVIYPERKKKEYN 224 (715)
T ss_dssp GGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHH-HHTC-EE-EECCCCS----SCEEEEEEEECSSTTEEE
T ss_pred hhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHH-HhCC-Cc-cCCCCCC----CCceEEEEecCCccccee
Confidence 999988788888888887776 78999999999752 44443 4422 11 1111100 001110
Q ss_pred EEEecCc----chHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCC---------------------------
Q 039378 405 VEVLDDR----SRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSG--------------------------- 453 (600)
Q Consensus 405 ~~~~~~~----~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~--------------------------- 453 (600)
....... .........+..... .++++||||+++..+..++..|....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 303 (715)
T 2va8_A 225 VIFKDNTTKKVHGDDAIIAYTLDSLS-KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDE 303 (715)
T ss_dssp EEETTSCEEEEESSSHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHH
T ss_pred eecCcchhhhcccchHHHHHHHHHHh-cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccc
Confidence 1011100 001122333333222 46899999999999999999997642
Q ss_pred ---------CeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEE----cC-------CCCChhhH
Q 039378 454 ---------WKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVIN----YS-------FPLTTEDY 513 (600)
Q Consensus 454 ---------~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d-------~p~s~~~y 513 (600)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|
T Consensus 304 ~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~ 383 (715)
T 2va8_A 304 KELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEY 383 (715)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHH
T ss_pred cHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHH
Confidence 24899999999999999999999999999999999999999999999999 99 89999999
Q ss_pred HHHhhhccCCCC--ccEEEEEEcCCcH
Q 039378 514 VHRIGRTGRAGK--KGVSHTFFTNHNK 538 (600)
Q Consensus 514 ~qr~GR~gR~g~--~g~~~~~~~~~d~ 538 (600)
+||+|||||.|. .|.|+.+++..+.
T Consensus 384 ~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 384 KQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 999999999884 7999999987763
No 26
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.6e-45 Score=416.64 Aligned_cols=335 Identities=18% Similarity=0.219 Sum_probs=208.8
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
|+..|+|+|.++++.++.|+++|+++|||+|||++|++|++..+...+. ..++++|||+||++|+.||++.+.+
T Consensus 245 g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~------~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp ---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc------cCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999888876532 2255689999999999999999999
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCC-CccceEEEEEcccchhhcCCChHHH-HHHHH
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC-HLSEVSFVVLDEADRMLDMGFEEPV-RFILS 354 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~lViDEah~l~~~~~~~~~-~~il~ 354 (600)
++...++++..++|+.........+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+....+ ...+.
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred hcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 987778999999999877777777777899999999999999987766 7889999999999999875422221 12222
Q ss_pred h----cCcCCcEEEEeccCCh-----------hHHHHHHH------------------hcCCCCeEEEECCcccccC---
Q 039378 355 K----ISLARQMVMFSATWPI-----------EVHKLAEE------------------YMDPNPVKVVVGSEDLAAN--- 398 (600)
Q Consensus 355 ~----~~~~~q~i~~SATl~~-----------~~~~~~~~------------------~~~~~~~~i~~~~~~~~~~--- 398 (600)
. .....|+++||||++. .+..+... ++.................
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 1 1445789999999852 22222211 1111111111000000000
Q ss_pred -------------CC------eeEEEEE-e--------------------------------------------------
Q 039378 399 -------------HD------VMQIVEV-L-------------------------------------------------- 408 (600)
Q Consensus 399 -------------~~------~~~~~~~-~-------------------------------------------------- 408 (600)
.. +...... .
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 0000000 0
Q ss_pred ---------------------------------------------------cCcchHHHHHHHHHHH-hhcCCCeEEEEE
Q 039378 409 ---------------------------------------------------DDRSRDQRLLALLEKY-HKSQRNRVLVFA 436 (600)
Q Consensus 409 ---------------------------------------------------~~~~~~~~l~~~l~~~-~~~~~~~~lVF~ 436 (600)
....+...+..++... ....+.++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~ 638 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 0012333344444332 224568999999
Q ss_pred eehhcHHHHHHHHHhC------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCCEEEeccccccCCCCCCcCEEEE
Q 039378 437 LYQLEADRLENMLRRS------------GWKVVAIHGKKAQHERTKSLSLFKE-GTCPLMVATDVAARGLDIPDVEVVIN 503 (600)
Q Consensus 437 ~s~~~~~~l~~~L~~~------------~~~~~~l~~~~~~~~r~~~~~~F~~-g~~~vLvaT~~~~~Gldi~~v~~VI~ 503 (600)
+++.+++.|+..|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|++++||+
T Consensus 639 ~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~ 718 (797)
T 4a2q_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (797)
T ss_dssp SSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEE
T ss_pred CcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE
Confidence 9999999999999873 5667788999999999999999999 99999999999999999999999999
Q ss_pred cCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHh
Q 039378 504 YSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539 (600)
Q Consensus 504 ~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~ 539 (600)
||+|+|+..|+||+|| ||. +.|.+++|++..+..
T Consensus 719 yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp ESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 9999999999999999 999 799999999887653
No 27
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.4e-45 Score=410.05 Aligned_cols=334 Identities=21% Similarity=0.303 Sum_probs=257.2
Q ss_pred ccccCC--CCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCce
Q 039378 181 SFTESK--LPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPL 256 (600)
Q Consensus 181 ~~~~~~--l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~ 256 (600)
+|.+++ +++.+...+. ||..|+|+|.++++.++.+++++++||||||||++|.+|++..+.. +++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~ 70 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----------GGK 70 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----------TCC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----------CCc
Confidence 466777 8888888886 8899999999999999999999999999999999999999887653 235
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcc
Q 039378 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDE 336 (600)
Q Consensus 257 ~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDE 336 (600)
++|++|+++|+.|+++.+..+. ..++++..++|+...... ...+++|+|+||++|..++.+....+.++++|||||
T Consensus 71 ~l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE 146 (702)
T 2p6r_A 71 SLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDE 146 (702)
T ss_dssp EEEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETT
T ss_pred EEEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEee
Confidence 8999999999999999996554 347888888887655432 123589999999999999888766689999999999
Q ss_pred cchhhcCCChHHHHHHHHhc---CcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEE------EE
Q 039378 337 ADRMLDMGFEEPVRFILSKI---SLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIV------EV 407 (600)
Q Consensus 337 ah~l~~~~~~~~~~~il~~~---~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~ 407 (600)
||.+.++++...+..++..+ ....|+|+||||+++ ...+. .++.. + .+...... ..+...+ ..
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~-~~l~~-~-~~~~~~r~----~~l~~~~~~~~~~~~ 218 (702)
T 2p6r_A 147 IHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIA-EWLDA-D-YYVSDWRP----VPLVEGVLCEGTLEL 218 (702)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHH-HHTTC-E-EEECCCCS----SCEEEEEECSSEEEE
T ss_pred eeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHH-HHhCC-C-cccCCCCC----ccceEEEeeCCeeec
Confidence 99999988888888877665 467899999999985 34444 34422 2 11111111 1111110 01
Q ss_pred ecCcc---hHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC------------------------------CC
Q 039378 408 LDDRS---RDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS------------------------------GW 454 (600)
Q Consensus 408 ~~~~~---~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------------~~ 454 (600)
..... +......++..... .++++||||+++..+..++..|... +.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 219 FDGAFSTSRRVKFEELVEECVA-ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp EETTEEEEEECCHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred cCcchhhhhhhhHHHHHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 11100 00002222222222 4689999999999999999988643 13
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEE----cC---CCCChhhHHHHhhhccCCC--C
Q 039378 455 KVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVIN----YS---FPLTTEDYVHRIGRTGRAG--K 525 (600)
Q Consensus 455 ~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d---~p~s~~~y~qr~GR~gR~g--~ 525 (600)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| .
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~ 377 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDE 377 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCS
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 5888999999999999999999999999999999999999999999998 66 7899999999999999998 4
Q ss_pred ccEEEEEEcCCcH
Q 039378 526 KGVSHTFFTNHNK 538 (600)
Q Consensus 526 ~g~~~~~~~~~d~ 538 (600)
.|.|+++++..+.
T Consensus 378 ~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 378 RGEAIIIVGKRDR 390 (702)
T ss_dssp CEEEEEECCGGGH
T ss_pred CceEEEEecCccH
Confidence 7999999988763
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.7e-44 Score=414.77 Aligned_cols=320 Identities=21% Similarity=0.271 Sum_probs=257.6
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
+| .|+|+|.++|+.++.|+|++++||||||||++|++|++..+ . .++++|||+||++||.|+++.+..
T Consensus 76 gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~-~----------~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 76 GK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-R----------KGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp SS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH-T----------TTCCEEEEESSHHHHHHHHHHHHT
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH-h----------cCCeEEEEechHHHHHHHHHHHHH
Confidence 67 69999999999999999999999999999998877766655 1 145699999999999999999999
Q ss_pred hcCCCCceEEEEeCCCCh---HHHHHHHhcC-CcEEEEchHHHHHHHHccCCCccceEEEEEcccchh----------hc
Q 039378 277 AGKPCGVKSVCVYGGTSK---QPQITALRSG-VDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRM----------LD 342 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~---~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l----------~~ 342 (600)
++ ..++++..++||... ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++ ++
T Consensus 144 l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~ 220 (1104)
T 4ddu_A 144 LA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLM 220 (1104)
T ss_dssp TS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHH
T ss_pred hh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhH
Confidence 87 778999999999987 6666777766 99999999999887764 55778999999999754 45
Q ss_pred -CCChHH-HHHHHHhcC-----------cCCcEEEEecc-CChhHH-HHHHHhcCCCCeEEEECCcccccCCCeeEEEEE
Q 039378 343 -MGFEEP-VRFILSKIS-----------LARQMVMFSAT-WPIEVH-KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEV 407 (600)
Q Consensus 343 -~~~~~~-~~~il~~~~-----------~~~q~i~~SAT-l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 407 (600)
+||... +..++..++ ...|+++|||| .|..+. .+....+. +.+.... .....+.+.+..
T Consensus 221 ~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-----i~v~~~~-~~~~~i~~~~~~ 294 (1104)
T 4ddu_A 221 MVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTVGRLV-SVARNITHVRIS 294 (1104)
T ss_dssp TSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-----CCCCBCC-CCCCCEEEEEES
T ss_pred hcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-----EEeccCC-CCcCCceeEEEe
Confidence 888888 888888877 78899999999 565544 23333332 1111111 122334444433
Q ss_pred ecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEE-EEcCCCCHHHHHHHHHHHhcCCCCEEEe-
Q 039378 408 LDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVV-AIHGKKAQHERTKSLSLFKEGTCPLMVA- 485 (600)
Q Consensus 408 ~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~-~l~~~~~~~~r~~~~~~F~~g~~~vLva- 485 (600)
+ .+...+..++... ++++||||+++..+..++..|...|+.+. .+|| +|.+ ++.|++|+++||||
T Consensus 295 ~---~k~~~L~~ll~~~----~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVat 361 (1104)
T 4ddu_A 295 S---RSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGV 361 (1104)
T ss_dssp C---CCHHHHHHHHHHH----CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEE
T ss_pred c---CHHHHHHHHHHhc----CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEe
Confidence 3 4566667777663 58999999999999999999999999998 9999 3556 99999999999999
Q ss_pred ---ccccccCCCCCC-cCEEEEcCCCC-----------------------------------------------------
Q 039378 486 ---TDVAARGLDIPD-VEVVINYSFPL----------------------------------------------------- 508 (600)
Q Consensus 486 ---T~~~~~Gldi~~-v~~VI~~d~p~----------------------------------------------------- 508 (600)
|+++++|||+|+ |++|||||+|.
T Consensus 362 as~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i 441 (1104)
T 4ddu_A 362 QAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKV 441 (1104)
T ss_dssp TTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999 99999999998
Q ss_pred -------------------ChhhHHHHhhhccCCCCcc--EEEEEEcCCcHhHHHHHHHHHHH
Q 039378 509 -------------------TTEDYVHRIGRTGRAGKKG--VSHTFFTNHNKALAGELVNVLRE 550 (600)
Q Consensus 509 -------------------s~~~y~qr~GR~gR~g~~g--~~~~~~~~~d~~~~~~i~~~l~~ 550 (600)
++.+|+||+|||||.|..| .+++++..+|...++.|.+.++-
T Consensus 442 ~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~ 504 (1104)
T 4ddu_A 442 KEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLL 504 (1104)
T ss_dssp HHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHH
T ss_pred hhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhh
Confidence 7789999999999965432 34555555888888888887763
No 29
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-44 Score=405.37 Aligned_cols=313 Identities=19% Similarity=0.255 Sum_probs=250.5
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
+|. |+|+|.++++.++++++++++||||||||++|.+|++..+.. +.++||++||++|+.|+++.+..
T Consensus 84 ~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-----------g~rvL~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 84 PFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRVIYTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp SSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-----------TCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-----------CCeEEEECChHHHHHHHHHHHHH
Confidence 564 999999999999999999999999999999999988776532 35689999999999999999999
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhc
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~ 356 (600)
++. .+..++|+.... .+++|+|+||++|.+++.+....+.++++|||||||++.+++++..+..++..+
T Consensus 152 ~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l 220 (1010)
T 2xgj_A 152 EFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL 220 (1010)
T ss_dssp HHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS
T ss_pred HhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhc
Confidence 864 456677766543 247999999999999888777788999999999999999998899999999999
Q ss_pred CcCCcEEEEeccCChhHH--HHHHHhcCCCCeEEEECCcccccCCCeeEEEEEe---------cCcc-------------
Q 039378 357 SLARQMVMFSATWPIEVH--KLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVL---------DDRS------------- 412 (600)
Q Consensus 357 ~~~~q~i~~SATl~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------~~~~------------- 412 (600)
+...|+++||||+++... ..+.... ..+..+...... ...+.+++... +...
T Consensus 221 ~~~~~il~LSATi~n~~e~a~~l~~~~-~~~~~vi~~~~r---p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1010)
T 2xgj_A 221 PDKVRYVFLSATIPNAMEFAEWICKIH-SQPCHIVYTNFR---PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS 296 (1010)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHHHHHH-TSCEEEEEECCC---SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHhhc-CCCeEEEecCCC---cccceEEEEecCCcceeeeeccccccchHHHHHHHHH
Confidence 999999999999987532 2222223 334444333221 11122222110 0000
Q ss_pred ----------------------h--------HHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCe-------
Q 039378 413 ----------------------R--------DQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWK------- 455 (600)
Q Consensus 413 ----------------------~--------~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~------- 455 (600)
+ ...+..++..+......++||||+++..++.++..|...++.
T Consensus 297 l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~ 376 (1010)
T 2xgj_A 297 ISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEA 376 (1010)
T ss_dssp CC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHH
T ss_pred HhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHH
Confidence 0 222344555544445569999999999999999998765432
Q ss_pred --------------------------------EEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEE
Q 039378 456 --------------------------------VVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVIN 503 (600)
Q Consensus 456 --------------------------------~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~ 503 (600)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 377 i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~ 456 (1010)
T 2xgj_A 377 LTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFT 456 (1010)
T ss_dssp HHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEES
T ss_pred HHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEe
Confidence 889999999999999999999999999999999999999999999999
Q ss_pred ----cCC----CCChhhHHHHhhhccCCCC--ccEEEEEEcCC
Q 039378 504 ----YSF----PLTTEDYVHRIGRTGRAGK--KGVSHTFFTNH 536 (600)
Q Consensus 504 ----~d~----p~s~~~y~qr~GR~gR~g~--~g~~~~~~~~~ 536 (600)
||. |+++..|+||+|||||.|+ .|.|++++++.
T Consensus 457 ~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 457 SVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp CSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 999 9999999999999999997 59999999876
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-43 Score=381.26 Aligned_cols=326 Identities=20% Similarity=0.236 Sum_probs=246.3
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+|+|.+++++++.+ ++|+++|||+|||++++++++..+... +.++|||+|+++|+.||.+.+.++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~----------~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKY----------GGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHS----------CSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcC----------CCeEEEEECCHHHHHHHHHHHHHHhC
Confidence 6899999999999999 999999999999999999887766521 34589999999999999999999975
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcC
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA 359 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~ 359 (600)
.....+..++|+....... ....+++|+|+||+.|...+....+.+.++++|||||||++.+......+...+......
T Consensus 78 ~~~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T 1wp9_A 78 LPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (494)
T ss_dssp SCGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred cchhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCC
Confidence 4455778888877655433 333458999999999999888777788999999999999998654444444455555667
Q ss_pred CcEEEEeccCChhH---HHHHHHhcCCCCeEEEECCcc-cc--cCCCeeEEEEEe-------------------------
Q 039378 360 RQMVMFSATWPIEV---HKLAEEYMDPNPVKVVVGSED-LA--ANHDVMQIVEVL------------------------- 408 (600)
Q Consensus 360 ~q~i~~SATl~~~~---~~~~~~~~~~~~~~i~~~~~~-~~--~~~~~~~~~~~~------------------------- 408 (600)
.++++||||+.... ..+...+. .....+...... .. ............
T Consensus 157 ~~~l~lTaTp~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (494)
T 1wp9_A 157 PLVIGLTASPGSTPEKIMEVINNLG-IEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAE 235 (494)
T ss_dssp CCEEEEESCSCSSHHHHHHHHHHTT-CCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHhcC-hheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999997433 33333221 211111110000 00 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 039378 409 -------------------------------------------------------------------------------- 408 (600)
Q Consensus 409 -------------------------------------------------------------------------------- 408 (600)
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 315 (494)
T 1wp9_A 236 TGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKA 315 (494)
T ss_dssp HTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHH
T ss_pred hccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchh
Confidence
Q ss_pred ------------------------cCcchHHHHHHHHHHHhh-cCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcC--
Q 039378 409 ------------------------DDRSRDQRLLALLEKYHK-SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHG-- 461 (600)
Q Consensus 409 ------------------------~~~~~~~~l~~~l~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~-- 461 (600)
....+...+..++..+.. ..+.++||||+++..+..++..|...++.+..+||
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~ 395 (494)
T 1wp9_A 316 SKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQA 395 (494)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSS
T ss_pred hhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccc
Confidence 111233334444444321 35789999999999999999999999999999999
Q ss_pred ------CCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcC
Q 039378 462 ------KKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTN 535 (600)
Q Consensus 462 ------~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~ 535 (600)
+|+..+|..+++.|++|.++|||||+++++|||+|++++||+||+|||+..|+||+||+||.|+ |.++.|+++
T Consensus 396 ~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~ 474 (494)
T 1wp9_A 396 SKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAK 474 (494)
T ss_dssp CC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEET
T ss_pred cccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999997 999999998
Q ss_pred CcHh
Q 039378 536 HNKA 539 (600)
Q Consensus 536 ~d~~ 539 (600)
.+..
T Consensus 475 ~t~e 478 (494)
T 1wp9_A 475 GTRD 478 (494)
T ss_dssp TSHH
T ss_pred CCHH
Confidence 7643
No 31
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=6.4e-44 Score=384.71 Aligned_cols=324 Identities=19% Similarity=0.208 Sum_probs=226.5
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
|+ .|+|+|..++|.++.|+ |+.++||+|||++|++|++...+. ++.++||+||++||.|.++++..
T Consensus 72 g~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~-----------g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp SC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT-----------SSCCEEEESSHHHHHHHHHHHHH
T ss_pred CC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHH
Confidence 54 89999999999999998 999999999999999999866543 33589999999999999999999
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHH-HHHHHccC------CCccceEEEEEcccchhh-cCC----
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL-IDLIEMNV------CHLSEVSFVVLDEADRML-DMG---- 344 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~------~~l~~~~~lViDEah~l~-~~~---- 344 (600)
++..+++++.+++||.+.. .+.+..+++|+|+||++| .+++..+. ..++.+.++||||||+|+ +.+
T Consensus 138 l~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpL 215 (853)
T 2fsf_A 138 LFEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPL 215 (853)
T ss_dssp HHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEE
T ss_pred HHHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccc
Confidence 9998999999999998754 344445699999999999 78876542 567899999999999998 443
Q ss_pred -----------ChHHHHHHHHhcCc--------------------CCcEE------------------------EEeccC
Q 039378 345 -----------FEEPVRFILSKISL--------------------ARQMV------------------------MFSATW 369 (600)
Q Consensus 345 -----------~~~~~~~il~~~~~--------------------~~q~i------------------------~~SATl 369 (600)
+...+..++..++. .+|++ +||||.
T Consensus 216 IiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~ 295 (853)
T 2fsf_A 216 IISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPAN 295 (853)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred cccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCccc
Confidence 44567777777764 45543 899997
Q ss_pred ChhHHHHH-----HHhcCCC-------CeEEEE-----------------------------CCcccccCCCee------
Q 039378 370 PIEVHKLA-----EEYMDPN-------PVKVVV-----------------------------GSEDLAANHDVM------ 402 (600)
Q Consensus 370 ~~~~~~~~-----~~~~~~~-------~~~i~~-----------------------------~~~~~~~~~~~~------ 402 (600)
+..+..+. ..++..+ +.++.+ ...... ...+.
T Consensus 296 ~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~t-la~It~qnyfr 374 (853)
T 2fsf_A 296 IMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQT-LASITFQNYFR 374 (853)
T ss_dssp -------------------------------------------------------------CCCCCEE-EEEEEHHHHHT
T ss_pred chHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccc-cceeehHHHHh
Confidence 64222211 1111110 000000 000000 00000
Q ss_pred -----------------------------------------EEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhc
Q 039378 403 -----------------------------------------QIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLE 441 (600)
Q Consensus 403 -----------------------------------------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~ 441 (600)
..........+...+...+.... ..+.++||||+|+..
T Consensus 375 ~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~-~~gqpvLVft~sie~ 453 (853)
T 2fsf_A 375 LYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERT-AKGQPVLVGTISIEK 453 (853)
T ss_dssp TSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH-TTTCCEEEEESSHHH
T ss_pred hhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHh-cCCCCEEEEECcHHH
Confidence 00122233445555555554432 235689999999999
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCc-----------------------
Q 039378 442 ADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDV----------------------- 498 (600)
Q Consensus 442 ~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v----------------------- 498 (600)
++.|+..|...|+++..|||++.+.+|..+.++|+.| .|+|||++++||+||+..
T Consensus 454 se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~ 531 (853)
T 2fsf_A 454 SELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKA 531 (853)
T ss_dssp HHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHH
Confidence 9999999999999999999999888888888899988 599999999999999873
Q ss_pred --------------CEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhH
Q 039378 499 --------------EVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKAL 540 (600)
Q Consensus 499 --------------~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~ 540 (600)
.|||+|+.|.|...|.||+||+||.|.+|.+++|++..|..+
T Consensus 532 ~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l~ 587 (853)
T 2fsf_A 532 DWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALM 587 (853)
T ss_dssp HHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGGG
T ss_pred HhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHHH
Confidence 599999999999999999999999999999999999888543
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.6e-44 Score=410.68 Aligned_cols=334 Identities=19% Similarity=0.212 Sum_probs=206.1
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
++..|+|+|.++++.++.|+++|+++|||+|||++|++|++..+...+. ..++++|||+||++|+.||++.+.+
T Consensus 245 ~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~------~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp ---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS------SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc------cCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999998877655421 1255689999999999999999999
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCC-CccceEEEEEcccchhhcCCChH-HHHHHHH
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVC-HLSEVSFVVLDEADRMLDMGFEE-PVRFILS 354 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~lViDEah~l~~~~~~~-~~~~il~ 354 (600)
++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+... .+..++.
T Consensus 319 ~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred HhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 987778999999999876665555666689999999999999987766 68899999999999998764211 1112222
Q ss_pred h----cCcCCcEEEEeccCCh-----------hHHHHHH------------------HhcCCCCeEEE-ECCcccccC--
Q 039378 355 K----ISLARQMVMFSATWPI-----------EVHKLAE------------------EYMDPNPVKVV-VGSEDLAAN-- 398 (600)
Q Consensus 355 ~----~~~~~q~i~~SATl~~-----------~~~~~~~------------------~~~~~~~~~i~-~~~~~~~~~-- 398 (600)
. .....|+++||||+.. .+..+.. .++ ..+.... .........
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~-~~p~~~~~~~~~~~~~~~~ 477 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFM-NKPEIDVRLVKRRIHNPFA 477 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHS-CCCCEEEEECCCCSCCHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhc-cCCcceEEecccccCcHHH
Confidence 1 1445789999999852 1222211 111 1111111 100000000
Q ss_pred --------------------CCeeEEEEEe--------------------------------------------------
Q 039378 399 --------------------HDVMQIVEVL-------------------------------------------------- 408 (600)
Q Consensus 399 --------------------~~~~~~~~~~-------------------------------------------------- 408 (600)
..+.......
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~ 557 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 0000000000
Q ss_pred ----------------------------------------------------cCcchHHHHHHHHHHHh-hcCCCeEEEE
Q 039378 409 ----------------------------------------------------DDRSRDQRLLALLEKYH-KSQRNRVLVF 435 (600)
Q Consensus 409 ----------------------------------------------------~~~~~~~~l~~~l~~~~-~~~~~~~lVF 435 (600)
....+...+..++.... ...+.++|||
T Consensus 558 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF 637 (936)
T 4a2w_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (936)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEE
T ss_pred hhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEE
Confidence 00112222333333321 2346899999
Q ss_pred EeehhcHHHHHHHHHhC------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCCEEEeccccccCCCCCCcCEEE
Q 039378 436 ALYQLEADRLENMLRRS------------GWKVVAIHGKKAQHERTKSLSLFKE-GTCPLMVATDVAARGLDIPDVEVVI 502 (600)
Q Consensus 436 ~~s~~~~~~l~~~L~~~------------~~~~~~l~~~~~~~~r~~~~~~F~~-g~~~vLvaT~~~~~Gldi~~v~~VI 502 (600)
|+++.+++.|+..|... |..+..+||+|++.+|..+++.|+. |.++|||||+++++|||+|++++||
T Consensus 638 ~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI 717 (936)
T 4a2w_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (936)
T ss_dssp ESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEE
T ss_pred eCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEE
Confidence 99999999999999976 5667778999999999999999999 9999999999999999999999999
Q ss_pred EcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHh
Q 039378 503 NYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539 (600)
Q Consensus 503 ~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~ 539 (600)
+||+|+|+..|+||+|| ||. +.|.++.|++..+..
T Consensus 718 ~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 718 LYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp EESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred EeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 99999999999999999 999 689999999876543
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.2e-44 Score=416.68 Aligned_cols=318 Identities=21% Similarity=0.295 Sum_probs=251.2
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
||. | |+|.++|+.++.|+|++++||||||||+ |++|++..+... ++++|||+||++||.|+++.+..
T Consensus 55 g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~----------~~~~lil~PtreLa~Q~~~~l~~ 121 (1054)
T 1gku_B 55 GEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK----------GKRCYVIFPTSLLVIQAAETIRK 121 (1054)
T ss_dssp CSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT----------SCCEEEEESCHHHHHHHHHHHHH
T ss_pred CCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc----------CCeEEEEeccHHHHHHHHHHHHH
Confidence 898 9 9999999999999999999999999998 899998887643 45689999999999999999999
Q ss_pred hcCCCCc----eEEEEeCCCChHHH---HHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHH
Q 039378 277 AGKPCGV----KSVCVYGGTSKQPQ---ITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPV 349 (600)
Q Consensus 277 ~~~~~~~----~~~~~~~g~~~~~~---~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~ 349 (600)
++...++ .+..++||.....+ ...+.. ++|+|+||++|.+++.+ +.++++|||||||+|++ +...+
T Consensus 122 l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~ 194 (1054)
T 1gku_B 122 YAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNV 194 (1054)
T ss_dssp HHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHH
T ss_pred HHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccH
Confidence 9988888 88899999887663 344455 99999999999987654 67899999999999998 55777
Q ss_pred HHHHHhc-----------CcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHH
Q 039378 350 RFILSKI-----------SLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLL 418 (600)
Q Consensus 350 ~~il~~~-----------~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 418 (600)
..++..+ +..+|+++||||++.. ..+...++ ..+..+.+.... .....+.+.+. ...+...+.
T Consensus 195 ~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~-~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~~L~ 268 (1054)
T 1gku_B 195 DKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELF-RQLLNFDIGSSR-ITVRNVEDVAV---NDESISTLS 268 (1054)
T ss_dssp HHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHH-HHHHCCCCSCCE-ECCCCEEEEEE---SCCCTTTTH
T ss_pred HHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHh-hcceEEEccCcc-cCcCCceEEEe---chhHHHHHH
Confidence 8777766 3457899999999886 42222222 111112222211 11222333332 234444555
Q ss_pred HHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEe----ccccccCCC
Q 039378 419 ALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVA----TDVAARGLD 494 (600)
Q Consensus 419 ~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLva----T~~~~~Gld 494 (600)
.++... ++++||||+++..++.++..|... +.+..+||++ ..+++.|++|.++|||| |+++++|||
T Consensus 269 ~ll~~~----~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGID 338 (1054)
T 1gku_B 269 SILEKL----GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLD 338 (1054)
T ss_dssp HHHTTS----CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSC
T ss_pred HHHhhc----CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccc
Confidence 555432 578999999999999999999988 9999999998 37889999999999999 999999999
Q ss_pred CCCc-CEEEEcCCC------------------------------------------------------------------
Q 039378 495 IPDV-EVVINYSFP------------------------------------------------------------------ 507 (600)
Q Consensus 495 i~~v-~~VI~~d~p------------------------------------------------------------------ 507 (600)
+|+| ++||+||+|
T Consensus 339 ip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 418 (1054)
T 1gku_B 339 LPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVRE 418 (1054)
T ss_dssp CTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEET
T ss_pred cCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEee
Confidence 9995 999999999
Q ss_pred -----CChhhHHHHhhhccCCCCcc--EEEEEEcCCcHhHHHHHHHHHHH
Q 039378 508 -----LTTEDYVHRIGRTGRAGKKG--VSHTFFTNHNKALAGELVNVLRE 550 (600)
Q Consensus 508 -----~s~~~y~qr~GR~gR~g~~g--~~~~~~~~~d~~~~~~i~~~l~~ 550 (600)
.+..+|+||+|||||.|..| .+++|+...+...+..|.+.++.
T Consensus 419 ~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 419 GEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp TEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999988776 48888888898888888888874
No 34
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=7.2e-43 Score=376.66 Aligned_cols=337 Identities=17% Similarity=0.195 Sum_probs=258.4
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
|+ .|+|+|..++|.++.|+ |+.++||+|||++|.+|++...+.. ..|+||+||++||.|..+++..
T Consensus 109 G~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g-----------~~v~VvTpTreLA~Qdae~m~~ 174 (922)
T 1nkt_A 109 DQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAG-----------NGVHIVTVNDYLAKRDSEWMGR 174 (922)
T ss_dssp SC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTT-----------SCEEEEESSHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhC-----------CCeEEEeCCHHHHHHHHHHHHH
Confidence 88 99999999999999998 9999999999999999998765542 2489999999999999999999
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHH-HHHHHcc------CCCccceEEEEEcccchhh-cC-----
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL-IDLIEMN------VCHLSEVSFVVLDEADRML-DM----- 343 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~~~~lViDEah~l~-~~----- 343 (600)
++..+++++.+++||.+.... ....+++|+|+||++| .+++..+ .+.++.+.++||||||.|+ +.
T Consensus 175 l~~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 175 VHRFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp HHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred HHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 999999999999999875433 3344689999999999 7777654 3567889999999999998 32
Q ss_pred ----------CChHHHHHHHHhcC---------cCCcEE-----------------EEeccCChhHHHH---H--HHhcC
Q 039378 344 ----------GFEEPVRFILSKIS---------LARQMV-----------------MFSATWPIEVHKL---A--EEYMD 382 (600)
Q Consensus 344 ----------~~~~~~~~il~~~~---------~~~q~i-----------------~~SATl~~~~~~~---~--~~~~~ 382 (600)
+|...+..++..++ ..+|++ +||||++..+..+ + ..++.
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~ 332 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFS 332 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCC
T ss_pred eecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhh
Confidence 36678888999997 678888 8999987533322 1 22332
Q ss_pred CCC-------eEEEECCcc----------------------cccCCC------ee-------------------------
Q 039378 383 PNP-------VKVVVGSED----------------------LAANHD------VM------------------------- 402 (600)
Q Consensus 383 ~~~-------~~i~~~~~~----------------------~~~~~~------~~------------------------- 402 (600)
.+. .++.+.... ...... +.
T Consensus 333 ~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 333 RDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp BTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 221 111111100 000000 00
Q ss_pred ----------------------EEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEc
Q 039378 403 ----------------------QIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIH 460 (600)
Q Consensus 403 ----------------------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~ 460 (600)
..........+...+...+..... .+.++||||+|+..++.|+..|...|+++..||
T Consensus 413 ~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~-~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLn 491 (922)
T 1nkt_A 413 HEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA-KGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLN 491 (922)
T ss_dssp HHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHTTCCCEEEC
T ss_pred HHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEec
Confidence 001122233355555555544322 356899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCc------------------------------------------
Q 039378 461 GKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDV------------------------------------------ 498 (600)
Q Consensus 461 ~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v------------------------------------------ 498 (600)
|++.+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 492 ak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (922)
T 1nkt_A 492 AKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASK 569 (922)
T ss_dssp SSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTH
T ss_pred CChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 999888888788888887 599999999999999975
Q ss_pred ----------CEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHH----HHHHHHHHHhc
Q 039378 499 ----------EVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALA----GELVNVLREAR 552 (600)
Q Consensus 499 ----------~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~----~~i~~~l~~~~ 552 (600)
.|||+|+.|.|...|.||+||+||.|.+|.+++|++..|..+- ..+..++...+
T Consensus 570 ~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~~~~ 637 (922)
T 1nkt_A 570 EAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRLN 637 (922)
T ss_dssp HHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHHHTT
T ss_pred hhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhhhHHHHHHHHHhC
Confidence 4999999999999999999999999999999999999887442 44555555543
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=6.9e-44 Score=399.76 Aligned_cols=326 Identities=21% Similarity=0.266 Sum_probs=226.0
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHH-HHHHHHhc
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQI-YDVLNDAG 278 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~-~~~~~~~~ 278 (600)
.|+|+|.++++.++.|+++|+++|||+|||++|++|++..+...+. ...+.++|||+|+++|+.|| .+.+.+++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-----~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK-----ASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH-----HTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-----cCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 6899999999999999999999999999999999999888776532 01134589999999999999 99999988
Q ss_pred CCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHH------HccCCCccceEEEEEcccchhhcCC-ChHHHHH
Q 039378 279 KPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLI------EMNVCHLSEVSFVVLDEADRMLDMG-FEEPVRF 351 (600)
Q Consensus 279 ~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l------~~~~~~l~~~~~lViDEah~l~~~~-~~~~~~~ 351 (600)
.. ++.+..++|+.........+..+++|+|+||++|.+.+ ....+.+..+++|||||||++...+ +...+..
T Consensus 82 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~ 160 (699)
T 4gl2_A 82 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 160 (699)
T ss_dssp TT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHH
T ss_pred Cc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHH
Confidence 65 47888899988776666666677999999999999887 3445678899999999999986543 3333332
Q ss_pred HHHhc----C---------cCCcEEEEeccCChh-----------HHHHHHHhcCCCCeEEEECC-ccc--ccCCCeeEE
Q 039378 352 ILSKI----S---------LARQMVMFSATWPIE-----------VHKLAEEYMDPNPVKVVVGS-EDL--AANHDVMQI 404 (600)
Q Consensus 352 il~~~----~---------~~~q~i~~SATl~~~-----------~~~~~~~~~~~~~~~i~~~~-~~~--~~~~~~~~~ 404 (600)
.+... . ..+++++||||++.. +..+...+. ...+...... ... ........+
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~-~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 161 YLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLD-AFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHT-CSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcC-CCEEEeecCchHHHhhhcCCCceEE
Confidence 22211 1 557899999998862 222222211 1000000000 000 000000000
Q ss_pred EEEec---------------------------------------------------------------------------
Q 039378 405 VEVLD--------------------------------------------------------------------------- 409 (600)
Q Consensus 405 ~~~~~--------------------------------------------------------------------------- 409 (600)
.....
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRM 319 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000
Q ss_pred -----------------------------------------------------------CcchHHHHHHHHHH-HhhcC-
Q 039378 410 -----------------------------------------------------------DRSRDQRLLALLEK-YHKSQ- 428 (600)
Q Consensus 410 -----------------------------------------------------------~~~~~~~l~~~l~~-~~~~~- 428 (600)
...+...+..++.. +....
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~ 399 (699)
T 4gl2_A 320 IDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEE 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 00111122223322 22223
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhC------CCeEEEEcCC--------CCHHHHHHHHHHHhcCCCCEEEeccccccCCC
Q 039378 429 RNRVLVFALYQLEADRLENMLRRS------GWKVVAIHGK--------KAQHERTKSLSLFKEGTCPLMVATDVAARGLD 494 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~------~~~~~~l~~~--------~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gld 494 (600)
++++||||+++.+++.|+..|... |+.+..+||+ |++.+|..+++.|++|.++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 689999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred CCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcC
Q 039378 495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTN 535 (600)
Q Consensus 495 i~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~ 535 (600)
+|++++||+||+|+|+..|+||+||+||.| .+++++..
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999999976654 44444444
No 36
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.1e-42 Score=391.91 Aligned_cols=312 Identities=19% Similarity=0.228 Sum_probs=240.0
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
+| .|+|+|.++|+.+++|++++++||||||||++|++|+...+.. ++++||++|+++|+.|+++.+..
T Consensus 37 ~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~-----------g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 37 PF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-----------MTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp SS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT-----------TCEEEEEESCGGGHHHHHHHHHT
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHHHHHH
Confidence 44 4899999999999999999999999999999999887765432 45689999999999999999998
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhc
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI 356 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~ 356 (600)
+.. ++.+..++|+.... ..++|+|+||++|.+++......+.++++|||||||++.++++...+..++..+
T Consensus 105 ~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l 175 (997)
T 4a4z_A 105 TFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML 175 (997)
T ss_dssp TC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHS
T ss_pred HcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhc
Confidence 764 46778888876543 237999999999999988777778999999999999999999999999999999
Q ss_pred CcCCcEEEEeccCChhHHHHHHHhcC--CCCeEEEECCcccccCCCeeEEEE-------EecC-----------------
Q 039378 357 SLARQMVMFSATWPIEVHKLAEEYMD--PNPVKVVVGSEDLAANHDVMQIVE-------VLDD----------------- 410 (600)
Q Consensus 357 ~~~~q~i~~SATl~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~----------------- 410 (600)
+...|+|+||||+++.. .+...+.. ..+..+...... ...+.+++. ....
T Consensus 176 ~~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r---~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (997)
T 4a4z_A 176 PQHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR---PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILN 251 (997)
T ss_dssp CTTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC---SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC
T ss_pred ccCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCC---CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhh
Confidence 99999999999998654 23322210 122222211110 001111100 0000
Q ss_pred ------------------------------------------------------------------cchHHHHHHHHHHH
Q 039378 411 ------------------------------------------------------------------RSRDQRLLALLEKY 424 (600)
Q Consensus 411 ------------------------------------------------------------------~~~~~~l~~~l~~~ 424 (600)
......+..++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l 331 (997)
T 4a4z_A 252 GESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYL 331 (997)
T ss_dssp -----------------------------------------------------------------CCCCTTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 00011233344444
Q ss_pred hhcCCCeEEEEEeehhcHHHHHHHHHhCCC---------------------------------------eEEEEcCCCCH
Q 039378 425 HKSQRNRVLVFALYQLEADRLENMLRRSGW---------------------------------------KVVAIHGKKAQ 465 (600)
Q Consensus 425 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~l~~~~~~ 465 (600)
......++||||+++..++.++..|...++ .+..+||+|++
T Consensus 332 ~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~ 411 (997)
T 4a4z_A 332 RKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLP 411 (997)
T ss_dssp HHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCH
T ss_pred HhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCH
Confidence 444567999999999999999999977655 57999999999
Q ss_pred HHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCC---------ChhhHHHHhhhccCCC--CccEEEEEEc
Q 039378 466 HERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPL---------TTEDYVHRIGRTGRAG--KKGVSHTFFT 534 (600)
Q Consensus 466 ~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~---------s~~~y~qr~GR~gR~g--~~g~~~~~~~ 534 (600)
.+|..+++.|+.|.++|||||+++++|||+|+ ..||+++.|. ++..|+||+|||||.| ..|.|++++.
T Consensus 412 ~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 412 IVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 99999999999999999999999999999999 6666655554 9999999999999998 5677887773
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.8e-41 Score=402.78 Aligned_cols=349 Identities=19% Similarity=0.238 Sum_probs=260.7
Q ss_pred CCHHHHHhhcCCCCCcHHHHHHhhhhhc-CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHH
Q 039378 187 LPDDVLGCCKNFKNPSPIQSHAWPFLLN-GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRE 265 (600)
Q Consensus 187 l~~~l~~~~~~~~~~~~~Q~~~i~~il~-~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~ 265 (600)
||+.....+.||..++++|.+++|.++. ++|++++||||||||++|.+|++..+.+...........+.++|||+|+++
T Consensus 66 Lp~~~~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kA 145 (1724)
T 4f92_B 66 LPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRS 145 (1724)
T ss_dssp SCGGGSTTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHH
T ss_pred cCHHHHHhcCCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHH
Confidence 5666666677999999999999999875 579999999999999999999999998765443333445778999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccC--CCccceEEEEEcccchhhcC
Q 039378 266 LADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNV--CHLSEVSFVVLDEADRMLDM 343 (600)
Q Consensus 266 La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~--~~l~~~~~lViDEah~l~~~ 343 (600)
||.|+++.|.+.....|+++..++|+...... ...+++|+||||++|..++.+.. ..+..+++|||||+|.+.+
T Consensus 146 La~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d- 221 (1724)
T 4f92_B 146 LVQEMVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD- 221 (1724)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-
Confidence 99999999999888889999999998765432 12358999999999866655432 2378899999999997765
Q ss_pred CChHHHHHHHHh-------cCcCCcEEEEeccCChhHHHHHHHhcCCCCe--EEEECCcccccCCCeeEEEEEecCcchH
Q 039378 344 GFEEPVRFILSK-------ISLARQMVMFSATWPIEVHKLAEEYMDPNPV--KVVVGSEDLAANHDVMQIVEVLDDRSRD 414 (600)
Q Consensus 344 ~~~~~~~~il~~-------~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (600)
..+..++.++.+ .+...|+|+||||+|+. ..++ .++...+. ...+... . .+..+.+.+.........
T Consensus 222 ~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~-~dvA-~wL~~~~~~~~~~~~~~-~-RPvpL~~~~~~~~~~~~~ 297 (1724)
T 4f92_B 222 DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY-EDVA-TFLRVDPAKGLFYFDNS-F-RPVPLEQTYVGITEKKAI 297 (1724)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH-HHHH-HHTTCCHHHHEEECCGG-G-CSSCEEEECCEECCCCHH
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH-HHHH-HHhCCCCCCCeEEECCC-C-ccCccEEEEeccCCcchh
Confidence 577777666543 45678999999999853 4444 44533321 1222221 1 223344443333333222
Q ss_pred HH---HHHHHHH-Hhh-cCCCeEEEEEeehhcHHHHHHHHHhC-------------------------------------
Q 039378 415 QR---LLALLEK-YHK-SQRNRVLVFALYQLEADRLENMLRRS------------------------------------- 452 (600)
Q Consensus 415 ~~---l~~~l~~-~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------------------- 452 (600)
.. +...+.. +.. ..++++||||+|++.+..++..|...
T Consensus 298 ~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 377 (1724)
T 4f92_B 298 KRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLL 377 (1724)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHh
Confidence 21 2222211 111 23568999999999999888877531
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEE----cC------CCCChhhHHHHhhhccC
Q 039378 453 GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVIN----YS------FPLTTEDYVHRIGRTGR 522 (600)
Q Consensus 453 ~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d------~p~s~~~y~qr~GR~gR 522 (600)
...++.+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||. |+ .|.++.+|+||+|||||
T Consensus 378 ~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR 457 (1724)
T 4f92_B 378 PYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGR 457 (1724)
T ss_dssp TTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSC
T ss_pred hcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccC
Confidence 234899999999999999999999999999999999999999999999985 44 35689999999999999
Q ss_pred CCC--ccEEEEEEcCCcHhHHHH
Q 039378 523 AGK--KGVSHTFFTNHNKALAGE 543 (600)
Q Consensus 523 ~g~--~g~~~~~~~~~d~~~~~~ 543 (600)
.|. .|.++++.+..+......
T Consensus 458 ~g~d~~G~~ii~~~~~~~~~~~~ 480 (1724)
T 4f92_B 458 PQYDTKGEGILITSHGELQYYLS 480 (1724)
T ss_dssp TTTCSCEEEEEEEESTTCCHHHH
T ss_pred CCCCCccEEEEEecchhHHHHHH
Confidence 875 699999988877655433
No 38
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.2e-42 Score=375.72 Aligned_cols=325 Identities=16% Similarity=0.152 Sum_probs=243.6
Q ss_pred CCCCHHHHHhhcC-CCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEccc
Q 039378 185 SKLPDDVLGCCKN-FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPT 263 (600)
Q Consensus 185 ~~l~~~l~~~~~~-~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Pt 263 (600)
+++++.++..+.. ...++|+|+.+++.+++++|++++||||||||++|++|++..+... ++++||++||
T Consensus 155 l~~~~~~~~~l~~~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~----------~~~vLvl~Pt 224 (618)
T 2whx_A 155 VTKSGDYVSAITQAERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR----------RLRTLILAPT 224 (618)
T ss_dssp -------CEECBCCCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEESS
T ss_pred ccchHHHHHHHhhccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCeEEEEcCh
Confidence 4566666666654 6889999999999999999999999999999999999999888753 4568999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcC
Q 039378 264 RELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM 343 (600)
Q Consensus 264 r~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~ 343 (600)
|+||.|+++.+..+ .+. ..+.... .....+..+.++|.+.|...+... ..+.++++|||||||++ +.
T Consensus 225 reLa~Qi~~~l~~~------~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~ 291 (618)
T 2whx_A 225 RVVAAEMEEALRGL------PIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DP 291 (618)
T ss_dssp HHHHHHHHHHTTTS------CEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SH
T ss_pred HHHHHHHHHHhcCC------cee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-Cc
Confidence 99999999887622 222 1111100 001123467788999888766544 35889999999999998 55
Q ss_pred CChHHHHHHHHhcC-cCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHH
Q 039378 344 GFEEPVRFILSKIS-LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLE 422 (600)
Q Consensus 344 ~~~~~~~~il~~~~-~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 422 (600)
++...+..++..++ ..+|+++||||++..+.. +...++..+.+.... +. .....++..+.
T Consensus 292 ~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~----~~~~~~~~~~v~~~~--------------~~-~~~~~ll~~l~ 352 (618)
T 2whx_A 292 CSVAARGYISTRVEMGEAAAIFMTATPPGSTDP----FPQSNSPIEDIEREI--------------PE-RSWNTGFDWIT 352 (618)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCS----SCCCSSCEEEEECCC--------------CS-SCCSSSCHHHH
T ss_pred cHHHHHHHHHHHhcccCccEEEEECCCchhhhh----hhccCCceeeecccC--------------CH-HHHHHHHHHHH
Confidence 56667777777665 578999999999876542 332233333322210 00 00111222222
Q ss_pred HHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEE-
Q 039378 423 KYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVV- 501 (600)
Q Consensus 423 ~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~V- 501 (600)
. ..+++||||+++..++.++..|...++.+..+||. +|.++++.|++|+.+|||||+++++|||+| +++|
T Consensus 353 ~----~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VI 423 (618)
T 2whx_A 353 D----YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVI 423 (618)
T ss_dssp H----CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEE
T ss_pred h----CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEE
Confidence 2 36799999999999999999999999999999984 788899999999999999999999999997 9988
Q ss_pred -------------------EEcCCCCChhhHHHHhhhccCCCC-ccEEEEEEc---CCcHhHHHHHHHHHHHhcCCCcHH
Q 039378 502 -------------------INYSFPLTTEDYVHRIGRTGRAGK-KGVSHTFFT---NHNKALAGELVNVLREARQVVPDA 558 (600)
Q Consensus 502 -------------------I~~d~p~s~~~y~qr~GR~gR~g~-~g~~~~~~~---~~d~~~~~~i~~~l~~~~~~ip~~ 558 (600)
|+|++|.+..+|+||+||+||.|. .|.|++|++ +.+...+..+...+......+|+.
T Consensus 424 d~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~ 503 (618)
T 2whx_A 424 DPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEG 503 (618)
T ss_dssp ECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTC
T ss_pred ECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCcc
Confidence 777889999999999999999964 899999998 788888888888877666666654
Q ss_pred HH
Q 039378 559 LL 560 (600)
Q Consensus 559 l~ 560 (600)
+.
T Consensus 504 ~~ 505 (618)
T 2whx_A 504 II 505 (618)
T ss_dssp CC
T ss_pred hh
Confidence 43
No 39
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5.5e-42 Score=369.93 Aligned_cols=314 Identities=17% Similarity=0.146 Sum_probs=236.5
Q ss_pred CCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 198 ~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
...|+|+|.++++.++.++++++++|||+|||++|+++++..+... ++++|||+||++|+.||++.+.++
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC----------SSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC----------CCeEEEEECcHHHHHHHHHHHHHh
Confidence 3489999999999999999999999999999999988877665432 236899999999999999999999
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcC
Q 039378 278 GKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357 (600)
Q Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~ 357 (600)
+...++.+..++++.....+ +..+++|+|+||+.|... ....+.++++|||||||++.. ..+..++..+.
T Consensus 181 ~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~ 250 (510)
T 2oca_A 181 RLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLN 250 (510)
T ss_dssp TSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCT
T ss_pred hcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcc
Confidence 77666788888888766543 445689999999976442 234578899999999999865 55777888887
Q ss_pred cCCcEEEEeccCChhHHHHHH--HhcCCCCeEEEECCccc-----ccCCCeeEEEEEec---------------------
Q 039378 358 LARQMVMFSATWPIEVHKLAE--EYMDPNPVKVVVGSEDL-----AANHDVMQIVEVLD--------------------- 409 (600)
Q Consensus 358 ~~~q~i~~SATl~~~~~~~~~--~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~--------------------- 409 (600)
...++++||||++........ .++ .+..+....... .....+........
T Consensus 251 ~~~~~l~lSATp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (510)
T 2oca_A 251 NCMFKFGLSGSLRDGKANIMQYVGMF--GEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITG 328 (510)
T ss_dssp TCCEEEEEESCGGGCSSCHHHHHHHH--CSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHT
T ss_pred cCcEEEEEEeCCCCCcccHHHhHHhh--CCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhc
Confidence 888999999999765432211 122 122221111100 00000111111111
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEec-cc
Q 039378 410 DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT-DV 488 (600)
Q Consensus 410 ~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT-~~ 488 (600)
...+...+..++.......+.++||||+ ...+..++..|...+..+..+||+|++.+|..+++.|++|...||||| ++
T Consensus 329 ~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~ 407 (510)
T 2oca_A 329 LSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGV 407 (510)
T ss_dssp CHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcCh
Confidence 0112223344444443333456667766 888999999999988899999999999999999999999999999999 99
Q ss_pred cccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEc
Q 039378 489 AARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFT 534 (600)
Q Consensus 489 ~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~ 534 (600)
+++|+|+|++++||++++|+++..|+||+||+||.|+.|.++++++
T Consensus 408 ~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 408 FSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred hhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999999999998875555555
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.2e-40 Score=393.48 Aligned_cols=340 Identities=20% Similarity=0.220 Sum_probs=253.8
Q ss_pred CCHHHHHhhc--CCCCCcHHHHHHhhhhhcC-CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEccc
Q 039378 187 LPDDVLGCCK--NFKNPSPIQSHAWPFLLNG-RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPT 263 (600)
Q Consensus 187 l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~-~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Pt 263 (600)
+.+...+.+. +|..++|+|.++++.++++ +|++++||||||||++|.+|++..+...+ +.++|||+|+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~---------~~kavyi~P~ 981 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS---------EGRCVYITPM 981 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT---------TCCEEEECSC
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC---------CCEEEEEcCh
Confidence 3445555555 7999999999999999865 57999999999999999999999887653 3358999999
Q ss_pred HHHHHHHHHHHHH-hcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc--CCCccceEEEEEcccchh
Q 039378 264 RELADQIYDVLND-AGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN--VCHLSEVSFVVLDEADRM 340 (600)
Q Consensus 264 r~La~q~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~--~~~l~~~~~lViDEah~l 340 (600)
|+||.|.++.|.+ ++...++++..++|+...... ...+++|+||||++|..++++. ...+.++++||+||+|.+
T Consensus 982 raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l 1058 (1724)
T 4f92_B 982 EALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLI 1058 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGG
T ss_pred HHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhc
Confidence 9999999999875 566678888888887543322 2234899999999997777643 234788999999999988
Q ss_pred hcCCChHHHHHHHHh-------cCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcch
Q 039378 341 LDMGFEEPVRFILSK-------ISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSR 413 (600)
Q Consensus 341 ~~~~~~~~~~~il~~-------~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (600)
.+. .+..+..++.+ .+...|+|+||||+++ ...+...+-........+.... .+..+..++........
T Consensus 1059 ~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~--RPvpL~~~i~~~~~~~~ 1134 (1724)
T 4f92_B 1059 GGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNV--RPVPLELHIQGFNISHT 1134 (1724)
T ss_dssp GST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGG--CSSCEEEEEEEECCCSH
T ss_pred CCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCC--CCCCeEEEEEeccCCCc
Confidence 774 56666655543 4567899999999985 3455554432222333333222 22334444444443333
Q ss_pred HHHHH-------HHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC----------------------------------
Q 039378 414 DQRLL-------ALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS---------------------------------- 452 (600)
Q Consensus 414 ~~~l~-------~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------------------------------- 452 (600)
...+. ..+.. ....+++||||+|+..+..++..|...
T Consensus 1135 ~~~~~~~~~~~~~~i~~--~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l 1212 (1724)
T 4f92_B 1135 QTRLLSMAKPVYHAITK--HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETL 1212 (1724)
T ss_dssp HHHHHTTHHHHHHHHHH--HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHH
T ss_pred hhhhhhhcchHHHHHHH--hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHH
Confidence 22222 12222 234679999999999998887765321
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEE----c------CCCCChhhHHHHhhhccC
Q 039378 453 GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVIN----Y------SFPLTTEDYVHRIGRTGR 522 (600)
Q Consensus 453 ~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~------d~p~s~~~y~qr~GR~gR 522 (600)
...++.+||+|++.+|..+++.|++|.++|||||+++++|||+|++.+||. | ..|.++.+|+||+|||||
T Consensus 1213 ~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR 1292 (1724)
T 4f92_B 1213 LNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR 1292 (1724)
T ss_dssp HTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCC
T ss_pred hCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccC
Confidence 235899999999999999999999999999999999999999999998883 2 246789999999999999
Q ss_pred CCC--ccEEEEEEcCCcHhHHHHH
Q 039378 523 AGK--KGVSHTFFTNHNKALAGEL 544 (600)
Q Consensus 523 ~g~--~g~~~~~~~~~d~~~~~~i 544 (600)
.|. .|.|++++...+...++.+
T Consensus 1293 ~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1293 PLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp TTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred CCCCCceEEEEEecchHHHHHHHH
Confidence 997 6999999988877665444
No 41
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-41 Score=375.64 Aligned_cols=313 Identities=20% Similarity=0.260 Sum_probs=234.9
Q ss_pred CCCCCcHHHHHHhhhhhcC------CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNG------RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQI 270 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~------~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~ 270 (600)
+| .||++|.++++.++.+ .+++++||||||||++|++|++..+.. +.+++|++||++||.|+
T Consensus 366 pf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-----------g~qvlvlaPtr~La~Q~ 433 (780)
T 1gm5_A 366 PF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-----------GFQTAFMVPTSILAIQH 433 (780)
T ss_dssp SS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-----------TSCEEEECSCHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHH
Confidence 78 8999999999998875 589999999999999999999887653 34589999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHH---HHHHhc-CCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCCh
Q 039378 271 YDVLNDAGKPCGVKSVCVYGGTSKQPQ---ITALRS-GVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFE 346 (600)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~ 346 (600)
++.+.++....++++..++|+...... ...+.. .++|+|+||+.|.+ ...+.++++|||||+|++...
T Consensus 434 ~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~--- 505 (780)
T 1gm5_A 434 YRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVK--- 505 (780)
T ss_dssp HHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC------
T ss_pred HHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHH---
Confidence 999999998888999999999876553 333444 48999999998744 356889999999999996321
Q ss_pred HHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhh
Q 039378 347 EPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK 426 (600)
Q Consensus 347 ~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 426 (600)
. ...+.......++++||||+.+....+. ++......+. .... .....+.. ..........+...+....
T Consensus 506 q--r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i-~~~p-~~r~~i~~---~~~~~~~~~~l~~~i~~~l- 575 (780)
T 1gm5_A 506 Q--REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVI-DEMP-PGRKEVQT---MLVPMDRVNEVYEFVRQEV- 575 (780)
T ss_dssp ----CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEE-CCCC-SSCCCCEE---CCCCSSTHHHHHHHHHHHT-
T ss_pred H--HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeee-eccC-CCCcceEE---EEeccchHHHHHHHHHHHH-
Confidence 1 1222233346799999999876544332 2322222221 1110 00111111 1112233444555554433
Q ss_pred cCCCeEEEEEeehh--------cHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCC
Q 039378 427 SQRNRVLVFALYQL--------EADRLENMLRR---SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDI 495 (600)
Q Consensus 427 ~~~~~~lVF~~s~~--------~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi 495 (600)
..+++++|||+++. .+..++..|.. .++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 576 ~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDi 655 (780)
T 1gm5_A 576 MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDV 655 (780)
T ss_dssp TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCC
T ss_pred hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccC
Confidence 23678999999764 46788888887 47889999999999999999999999999999999999999999
Q ss_pred CCcCEEEEcCCCC-ChhhHHHHhhhccCCCCccEEEEEEcCCcHh
Q 039378 496 PDVEVVINYSFPL-TTEDYVHRIGRTGRAGKKGVSHTFFTNHNKA 539 (600)
Q Consensus 496 ~~v~~VI~~d~p~-s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~ 539 (600)
|++++||++++|. +...|.||+||+||.|+.|.|++++++.+..
T Consensus 656 P~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 656 PRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp TTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred CCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 9999999999995 7888999999999999999999999854444
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.2e-41 Score=359.45 Aligned_cols=312 Identities=16% Similarity=0.153 Sum_probs=225.9
Q ss_pred CCCCCcHHHHHHhhhhhcCCcE-EEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDF-IGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN 275 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~-i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~ 275 (600)
|+..|+|+|+ +||.+++++++ +++||||||||++|++|++.++... ++++||++|||+||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~----------~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR----------RLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc----------CCcEEEECCCHHHHHHHHHHhc
Confidence 6788999985 79999999887 8889999999999999999887653 4568999999999999999875
Q ss_pred HhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHH-
Q 039378 276 DAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS- 354 (600)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~- 354 (600)
. +.+......... ....+..|.++|++.|.+.+... ..+.++++|||||||++ +.++...+..+..
T Consensus 70 g------~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 70 G------LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp T------SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred C------ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 2 222211111111 11234579999999998877644 45889999999999987 3222222222322
Q ss_pred hcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEE
Q 039378 355 KISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLV 434 (600)
Q Consensus 355 ~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lV 434 (600)
......|+++||||++..+.. ++...+..+..... ... ... ..+...+.. ..+++||
T Consensus 137 ~~~~~~~~i~~SAT~~~~~~~----~~~~~~~~~~~~~~-~p~-~~~-------------~~~~~~l~~----~~~~~lV 193 (451)
T 2jlq_A 137 VEMGEAAAIFMTATPPGSTDP----FPQSNSPIEDIERE-IPE-RSW-------------NTGFDWITD----YQGKTVW 193 (451)
T ss_dssp HHTTSCEEEEECSSCTTCCCS----SCCCSSCEEEEECC-CCS-SCC-------------SSSCHHHHH----CCSCEEE
T ss_pred hcCCCceEEEEccCCCccchh----hhcCCCceEecCcc-CCc-hhh-------------HHHHHHHHh----CCCCEEE
Confidence 234578999999999875432 22233333332211 000 000 001122222 3679999
Q ss_pred EEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcC---------
Q 039378 435 FALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYS--------- 505 (600)
Q Consensus 435 F~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d--------- 505 (600)
||+++..++.++..|...++.+..+||.+. ..+++.|++|+.+|||||+++++|||+|+ ++||+||
T Consensus 194 F~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~ 268 (451)
T 2jlq_A 194 FVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILT 268 (451)
T ss_dssp ECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEEC
T ss_pred EcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccc
Confidence 999999999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred -----------CCCChhhHHHHhhhccCCCC-ccEEEEEEcCCc---HhHHHHHHHHHHHhcCCCcHHHH
Q 039378 506 -----------FPLTTEDYVHRIGRTGRAGK-KGVSHTFFTNHN---KALAGELVNVLREARQVVPDALL 560 (600)
Q Consensus 506 -----------~p~s~~~y~qr~GR~gR~g~-~g~~~~~~~~~d---~~~~~~i~~~l~~~~~~ip~~l~ 560 (600)
.|.+..+|+||+||+||.|. .|.|++|+...+ ..........+...+..+|+++.
T Consensus 269 ~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 338 (451)
T 2jlq_A 269 DGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGII 338 (451)
T ss_dssp SSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCCC
T ss_pred cccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHhH
Confidence 99999999999999999998 888988875432 12222234444556667776663
No 43
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=5.3e-40 Score=379.99 Aligned_cols=322 Identities=19% Similarity=0.188 Sum_probs=248.1
Q ss_pred CCCCHHHHHhhc---CCCCCcHHHHHHhhhhhc----CC--cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCc
Q 039378 185 SKLPDDVLGCCK---NFKNPSPIQSHAWPFLLN----GR--DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255 (600)
Q Consensus 185 ~~l~~~l~~~~~---~~~~~~~~Q~~~i~~il~----~~--d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~ 255 (600)
++++......+. +| .|||+|.++++.++. ++ |++++++||+|||++|+++++..+.. +.
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-----------g~ 653 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-----------HK 653 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-----------TC
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-----------CC
Confidence 345555555443 55 479999999999886 65 89999999999999998888765432 34
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHH---HHHHhc-CCcEEEEchHHHHHHHHccCCCccceEE
Q 039378 256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQ---ITALRS-GVDIVIGTPGRLIDLIEMNVCHLSEVSF 331 (600)
Q Consensus 256 ~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~ 331 (600)
+++|++||++|+.|+++.+.++....++.+..+.+....... ...+.. .++|+|+||+.|. ..+.+.++++
T Consensus 654 ~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~l 728 (1151)
T 2eyq_A 654 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGL 728 (1151)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEE
T ss_pred eEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccce
Confidence 689999999999999999999887778888888877655443 233444 4899999998663 3456889999
Q ss_pred EEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCc
Q 039378 332 VVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDR 411 (600)
Q Consensus 332 lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 411 (600)
|||||||++ ......++..+....++++||||+++....+....+ .....+.... .....+..+....
T Consensus 729 vIiDEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~-~~~~~i~~~~---~~r~~i~~~~~~~--- 796 (1151)
T 2eyq_A 729 LIVDEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM-RDLSIIATPP---ARRLAVKTFVREY--- 796 (1151)
T ss_dssp EEEESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTT-SEEEECCCCC---CBCBCEEEEEEEC---
T ss_pred EEEechHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcC-CCceEEecCC---CCccccEEEEecC---
Confidence 999999994 344566667777788999999998876665554433 2222221111 1112233332222
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecccc
Q 039378 412 SRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS--GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVA 489 (600)
Q Consensus 412 ~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~ 489 (600)
........++..+. .+++++|||+++..+..++..|... ++.+..+||+|++.+|..+++.|++|+++|||||+++
T Consensus 797 ~~~~i~~~il~~l~--~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~ 874 (1151)
T 2eyq_A 797 DSMVVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTII 874 (1151)
T ss_dssp CHHHHHHHHHHHHT--TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTT
T ss_pred CHHHHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcc
Confidence 22222333333332 3689999999999999999999987 7899999999999999999999999999999999999
Q ss_pred ccCCCCCCcCEEEEcCC-CCChhhHHHHhhhccCCCCccEEEEEEcCCc
Q 039378 490 ARGLDIPDVEVVINYSF-PLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN 537 (600)
Q Consensus 490 ~~Gldi~~v~~VI~~d~-p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d 537 (600)
++|||+|++++||+++. ++++.+|+||+||+||.|+.|.|++++.+.+
T Consensus 875 e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 875 ETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp GGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred eeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99999999999999998 5799999999999999999999999987653
No 44
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.5e-41 Score=355.27 Aligned_cols=290 Identities=18% Similarity=0.199 Sum_probs=203.3
Q ss_pred hhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeC
Q 039378 211 FLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYG 290 (600)
Q Consensus 211 ~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~ 290 (600)
++++|+|++++||||||||++|++|++..+... ++++||++||++||.|+++.+..+. + ....+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~----------~~~~lil~Ptr~La~Q~~~~l~~~~----v--~~~~~ 67 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR----------RLRTLVLAPTRVVLSEMKEAFHGLD----V--KFHTQ 67 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTTTSC----E--EEESS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc----------CCeEEEEcchHHHHHHHHHHHhcCC----e--EEecc
Confidence 567899999999999999999999999877653 4568999999999999999887442 2 21111
Q ss_pred CCChHHHHHHHhcCCcEEEEchHHHH---------HHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhc-CcCC
Q 039378 291 GTSKQPQITALRSGVDIVIGTPGRLI---------DLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI-SLAR 360 (600)
Q Consensus 291 g~~~~~~~~~l~~~~~Iiv~Tp~~l~---------~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~-~~~~ 360 (600)
... .++||+++. ..+. ....+.++++|||||||++ +.++...+..+.... +..+
T Consensus 68 ~~~--------------~v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~ 131 (440)
T 1yks_A 68 AFS--------------AHGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANES 131 (440)
T ss_dssp CCC--------------CCCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSC
T ss_pred cce--------------eccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCc
Confidence 100 255554443 2222 2335789999999999998 322322333333322 3568
Q ss_pred cEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehh
Q 039378 361 QMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQL 440 (600)
Q Consensus 361 q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~ 440 (600)
|+++||||+++.+..+... ..+...... .+..... ..++..+.. .++++||||+++.
T Consensus 132 ~~l~~SAT~~~~~~~~~~~---~~~~~~~~~---------------~~~~~~~-~~~~~~l~~----~~~~~lVF~~s~~ 188 (440)
T 1yks_A 132 ATILMTATPPGTSDEFPHS---NGEIEDVQT---------------DIPSEPW-NTGHDWILA----DKRPTAWFLPSIR 188 (440)
T ss_dssp EEEEECSSCTTCCCSSCCC---SSCEEEEEC---------------CCCSSCC-SSSCHHHHH----CCSCEEEECSCHH
T ss_pred eEEEEeCCCCchhhhhhhc---CCCeeEeee---------------ccChHHH-HHHHHHHHh----cCCCEEEEeCCHH
Confidence 9999999998764422211 111111110 0111111 111122222 2679999999999
Q ss_pred cHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEE-----------------
Q 039378 441 EADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVIN----------------- 503 (600)
Q Consensus 441 ~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----------------- 503 (600)
.++.++..|...++.+..+|| .+|..+++.|++|+++|||||+++++|||+| +++||+
T Consensus 189 ~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~v 263 (440)
T 1yks_A 189 AANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVA 263 (440)
T ss_dssp HHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEE
T ss_pred HHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeeccccccee
Confidence 999999999999999999999 4688999999999999999999999999999 999996
Q ss_pred --cCCCCChhhHHHHhhhccCC-CCccEEEEEE---cCCcHhHHHHHHHHHHHhcCCCcHHHH
Q 039378 504 --YSFPLTTEDYVHRIGRTGRA-GKKGVSHTFF---TNHNKALAGELVNVLREARQVVPDALL 560 (600)
Q Consensus 504 --~d~p~s~~~y~qr~GR~gR~-g~~g~~~~~~---~~~d~~~~~~i~~~l~~~~~~ip~~l~ 560 (600)
|+.|.++.+|+||+||+||. |+.|.|++|+ ++.+...+..+...+......+|..+.
T Consensus 264 i~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~ 326 (440)
T 1yks_A 264 IKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGGMV 326 (440)
T ss_dssp EEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGGCC
T ss_pred eccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccccccc
Confidence 88999999999999999997 6899999997 677888888888777776677665543
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=4.1e-40 Score=359.89 Aligned_cols=307 Identities=17% Similarity=0.212 Sum_probs=218.7
Q ss_pred CCcHHHH-----HHhhhhh------cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHH
Q 039378 200 NPSPIQS-----HAWPFLL------NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELAD 268 (600)
Q Consensus 200 ~~~~~Q~-----~~i~~il------~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~ 268 (600)
.|+|+|+ ++||.++ .++|+|++||||||||++|++|++..+... ++++||++||++||.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~----------~~~~lilaPTr~La~ 284 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK----------RLRTAVLAPTRVVAA 284 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCcEEEEccHHHHHH
Confidence 8999999 9999988 899999999999999999999999887653 456899999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHH
Q 039378 269 QIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEP 348 (600)
Q Consensus 269 q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~ 348 (600)
|+++.+..+. +. ...+.... ....+.-+-+.+.+.+.+.+... ..+.++++|||||||++ +..+...
T Consensus 285 Q~~~~l~~~~----i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~ 351 (673)
T 2wv9_A 285 EMAEALRGLP----VR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAA 351 (673)
T ss_dssp HHHHHTTTSC----CE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHH
T ss_pred HHHHHHhcCC----ee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHH
Confidence 9999887552 21 11110000 00111234455666665544443 46889999999999998 2112222
Q ss_pred HHHHHHhcC-cCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhc
Q 039378 349 VRFILSKIS-LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKS 427 (600)
Q Consensus 349 ~~~il~~~~-~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 427 (600)
+..+...+. ..+|+++||||++..+..+... ..++...... ..... ...++..+ ..
T Consensus 352 ~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i~~v~~~---------------~~~~~-~~~~l~~l---~~- 408 (673)
T 2wv9_A 352 RGYIATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPVHDVSSE---------------IPDRA-WSSGFEWI---TD- 408 (673)
T ss_dssp HHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCEEEEECC---------------CCSSC-CSSCCHHH---HS-
T ss_pred HHHHHHhccccCCcEEEEcCCCChhhhhhccc---CCceEEEeee---------------cCHHH-HHHHHHHH---Hh-
Confidence 333333332 5789999999998764322110 1122111110 01011 01111112 11
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEE----
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVIN---- 503 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~---- 503 (600)
..+++||||+++..++.++..|...++.+..+||. +|..+++.|++|+++|||||+++++|||+| +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~ 483 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKS 483 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCc
Confidence 46799999999999999999999999999999993 799999999999999999999999999999 999998
Q ss_pred ----------------cCCCCChhhHHHHhhhccCC-CCccEEEEEE---cCCcHhHHHHHHHHHHHhcCCCcH
Q 039378 504 ----------------YSFPLTTEDYVHRIGRTGRA-GKKGVSHTFF---TNHNKALAGELVNVLREARQVVPD 557 (600)
Q Consensus 504 ----------------~d~p~s~~~y~qr~GR~gR~-g~~g~~~~~~---~~~d~~~~~~i~~~l~~~~~~ip~ 557 (600)
|++|.++.+|+||+||+||. |+.|.|++|+ ++.+...+..+...++.....++.
T Consensus 484 ~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~~ 557 (673)
T 2wv9_A 484 VKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLPN 557 (673)
T ss_dssp CCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCBTT
T ss_pred ccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccCCc
Confidence 67899999999999999999 7899999996 577777777776666554444444
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=3.3e-39 Score=359.35 Aligned_cols=340 Identities=18% Similarity=0.223 Sum_probs=247.0
Q ss_pred chhccccccccCCCCHHHHHhhc-CCCCCcHHHHHHhhhhhcC-CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCC
Q 039378 174 AKYKALKSFTESKLPDDVLGCCK-NFKNPSPIQSHAWPFLLNG-RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGK 251 (600)
Q Consensus 174 ~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~Q~~~i~~il~~-~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~ 251 (600)
....++.+|.++++++.+...+. ....|+++|+.+|+.++.+ ++++++||||||||+ ++|++........
T Consensus 66 ~~~~~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~------ 137 (773)
T 2xau_A 66 LEDGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPH------ 137 (773)
T ss_dssp HHHSSBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGG------
T ss_pred cccCCCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcccc------
Confidence 34566788999999999988876 3378999999999988755 579999999999999 5776633222111
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHhcC-CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceE
Q 039378 252 RVNPLCLVLSPTRELADQIYDVLNDAGK-PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVS 330 (600)
Q Consensus 252 ~~~~~~liv~Ptr~La~q~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~ 330 (600)
..+++++|++|+|+|+.|+.+.+..... ..+..+......... ...+.+|+++|||+|.+.+... ..+.+++
T Consensus 138 ~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~ 210 (773)
T 2xau_A 138 LENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMED-HDLSRYS 210 (773)
T ss_dssp GGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHS-TTCTTEE
T ss_pred CCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccc------cCCCCCEEEECHHHHHHHHhhC-ccccCCC
Confidence 1245689999999999999987766432 222222211111110 1234799999999999877654 3588999
Q ss_pred EEEEcccch-hhcCCC-hHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEe
Q 039378 331 FVVLDEADR-MLDMGF-EEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVL 408 (600)
Q Consensus 331 ~lViDEah~-l~~~~~-~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 408 (600)
+|||||+|. .++..+ ...+..++.. ....|+++||||++.. .+ ..++...+. +.+.... ..+..++...
T Consensus 211 ~lIlDEah~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~--~l-~~~~~~~~v-i~v~gr~----~pv~~~~~~~ 281 (773)
T 2xau_A 211 CIILDEAHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAE--KF-QRYFNDAPL-LAVPGRT----YPVELYYTPE 281 (773)
T ss_dssp EEEECSGGGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCH--HH-HHHTTSCCE-EECCCCC----CCEEEECCSS
T ss_pred EEEecCccccccchHHHHHHHHHHHHh-CCCceEEEEeccccHH--HH-HHHhcCCCc-ccccCcc----cceEEEEecC
Confidence 999999995 554322 2223334333 3468999999999643 33 345534443 3333221 2233333333
Q ss_pred cCcchHHHHHHH-HHHHhhcCCCeEEEEEeehhcHHHHHHHHHh-----------CCCeEEEEcCCCCHHHHHHHHHHHh
Q 039378 409 DDRSRDQRLLAL-LEKYHKSQRNRVLVFALYQLEADRLENMLRR-----------SGWKVVAIHGKKAQHERTKSLSLFK 476 (600)
Q Consensus 409 ~~~~~~~~l~~~-l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~-----------~~~~~~~l~~~~~~~~r~~~~~~F~ 476 (600)
.........+.. +..+.....+++||||+++..+..++..|.. .++.+..+||+|++.+|..+++.|+
T Consensus 282 ~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~ 361 (773)
T 2xau_A 282 FQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAP 361 (773)
T ss_dssp CCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCC
T ss_pred CchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcc
Confidence 333333333333 3333334578999999999999999999975 5788999999999999999999999
Q ss_pred -----cCCCCEEEeccccccCCCCCCcCEEEEcCC------------------CCChhhHHHHhhhccCCCCccEEEEEE
Q 039378 477 -----EGTCPLMVATDVAARGLDIPDVEVVINYSF------------------PLTTEDYVHRIGRTGRAGKKGVSHTFF 533 (600)
Q Consensus 477 -----~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~------------------p~s~~~y~qr~GR~gR~g~~g~~~~~~ 533 (600)
.|..+|||||+++++|||||++++||++++ |.+..+|+||+|||||. +.|.|++|+
T Consensus 362 ~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~ 440 (773)
T 2xau_A 362 ESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLY 440 (773)
T ss_dssp CCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESS
T ss_pred cccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEe
Confidence 999999999999999999999999999888 89999999999999999 799999999
Q ss_pred cCCcH
Q 039378 534 TNHNK 538 (600)
Q Consensus 534 ~~~d~ 538 (600)
++.+.
T Consensus 441 ~~~~~ 445 (773)
T 2xau_A 441 TEEAF 445 (773)
T ss_dssp CHHHH
T ss_pred cHHHh
Confidence 87654
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.8e-39 Score=349.01 Aligned_cols=277 Identities=21% Similarity=0.218 Sum_probs=210.2
Q ss_pred cHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCC
Q 039378 202 SPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPC 281 (600)
Q Consensus 202 ~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~ 281 (600)
+++|..+++.+..+++++++||||||||++|.+|++.. +.++||++|||+||.|+++.+.+..
T Consensus 219 ~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------------g~~vLVl~PTReLA~Qia~~l~~~~--- 281 (666)
T 3o8b_A 219 FTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------------GYKVLVLNPSVAATLGFGAYMSKAH--- 281 (666)
T ss_dssp CCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------------TCCEEEEESCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------------CCeEEEEcchHHHHHHHHHHHHHHh---
Confidence 34555556666678899999999999999998887651 3358999999999999999887654
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCc
Q 039378 282 GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQ 361 (600)
Q Consensus 282 ~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q 361 (600)
+..+...+|+.. +..+++|+|+||++| +....+.+.++++|||||||. ++.++...+..++..++..+|
T Consensus 282 g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~ 350 (666)
T 3o8b_A 282 GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGA 350 (666)
T ss_dssp SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTC
T ss_pred CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCC
Confidence 344556666643 345689999999998 455667788999999999975 455677778888888887777
Q ss_pred --EEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeeh
Q 039378 362 --MVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQ 439 (600)
Q Consensus 362 --~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~ 439 (600)
+++||||++..+. ...+....+... ..... .+ ...... +.....+++||||+++
T Consensus 351 ~llil~SAT~~~~i~-------~~~p~i~~v~~~---~~~~i-~~---~~~~~~----------l~~~~~~~vLVFv~Tr 406 (666)
T 3o8b_A 351 RLVVLATATPPGSVT-------VPHPNIEEVALS---NTGEI-PF---YGKAIP----------IEAIRGGRHLIFCHSK 406 (666)
T ss_dssp SEEEEEESSCTTCCC-------CCCTTEEEEECB---SCSSE-EE---TTEEEC----------GGGSSSSEEEEECSCH
T ss_pred ceEEEECCCCCcccc-------cCCcceEEEeec---ccchh-HH---HHhhhh----------hhhccCCcEEEEeCCH
Confidence 7788999987421 122222111110 00111 10 000000 1112478999999999
Q ss_pred hcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEE----------EcC----
Q 039378 440 LEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVI----------NYS---- 505 (600)
Q Consensus 440 ~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI----------~~d---- 505 (600)
+.++.++..|...++.+..+||+|++.+ |.++..+|||||+++++|||++ +++|| |||
T Consensus 407 ~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~ 478 (666)
T 3o8b_A 407 KKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPT 478 (666)
T ss_dssp HHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSS
T ss_pred HHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccc
Confidence 9999999999999999999999999875 4566679999999999999997 99988 677
Q ss_pred -------CCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhH
Q 039378 506 -------FPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKAL 540 (600)
Q Consensus 506 -------~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~ 540 (600)
+|.+.++|+||+||+|| |+.|. ++|+++.+...
T Consensus 479 ~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 479 FTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp CEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 99999 99999887654
No 48
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.5e-39 Score=344.56 Aligned_cols=293 Identities=20% Similarity=0.240 Sum_probs=214.6
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+|+|.++++.++.++++++++|||+|||++|+.++... +.++|||+|+++|+.||.+.+.++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------------~~~~Lvl~P~~~L~~Q~~~~~~~~-- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGIF-- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------------CSCEEEEESSHHHHHHHHHHGGGG--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEECCHHHHHHHHHHHHhC--
Confidence 7999999999999999999999999999999998876643 234899999999999999999985
Q ss_pred CCCce-EEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCc
Q 039378 280 PCGVK-SVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISL 358 (600)
Q Consensus 280 ~~~~~-~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~ 358 (600)
++. +..+.|+... .++|+|+||+.+...+.. ...++++|||||||++.+.++.. ++..+ .
T Consensus 157 --~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~ 217 (472)
T 2fwr_A 157 --GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-I 217 (472)
T ss_dssp --CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC-C
T ss_pred --CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc-C
Confidence 467 6666665543 379999999999776542 12468999999999999877643 44444 3
Q ss_pred CCcEEEEeccCChh-------------------HHHHHHHhcCCCCeE--EEECCccc--c-------------------
Q 039378 359 ARQMVMFSATWPIE-------------------VHKLAEEYMDPNPVK--VVVGSEDL--A------------------- 396 (600)
Q Consensus 359 ~~q~i~~SATl~~~-------------------~~~~~~~~~~~~~~~--i~~~~~~~--~------------------- 396 (600)
..+++++|||+... ...+...++ ..+.. +.+..... .
T Consensus 218 ~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (472)
T 2fwr_A 218 APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHL-AKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT 296 (472)
T ss_dssp CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCC-CSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT
T ss_pred CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcC-CCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 57899999998631 222211112 11111 11100000 0
Q ss_pred --cCCCeeEEEE---------------------EecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCC
Q 039378 397 --ANHDVMQIVE---------------------VLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSG 453 (600)
Q Consensus 397 --~~~~~~~~~~---------------------~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~ 453 (600)
....+..++. .+....+...+..++.. ..++++||||++...++.++..|.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~k~lvF~~~~~~~~~l~~~l~--- 370 (472)
T 2fwr_A 297 LRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER---HRKDKIIIFTRHNELVYRISKVFL--- 370 (472)
T ss_dssp TTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH---TSSSCBCCBCSCHHHHHHHHHHTT---
T ss_pred ccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh---CCCCcEEEEECCHHHHHHHHHHhC---
Confidence 0000000000 01112233444444444 347899999999999999999884
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCc-cE--EE
Q 039378 454 WKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKK-GV--SH 530 (600)
Q Consensus 454 ~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~-g~--~~ 530 (600)
+..+||+++..+|..+++.|++|.++|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+. +. ++
T Consensus 371 --~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 371 --IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp --CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred --cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999854 34 44
Q ss_pred EEEcCC
Q 039378 531 TFFTNH 536 (600)
Q Consensus 531 ~~~~~~ 536 (600)
.|++..
T Consensus 449 ~lv~~~ 454 (472)
T 2fwr_A 449 ELISRG 454 (472)
T ss_dssp EEEECS
T ss_pred EEEeCC
Confidence 455544
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.6e-38 Score=336.11 Aligned_cols=276 Identities=17% Similarity=0.201 Sum_probs=197.4
Q ss_pred HHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceE
Q 039378 206 SHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKS 285 (600)
Q Consensus 206 ~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~ 285 (600)
.....++..+++++++||||||||++|++|++..+... ++++||++|||+||.|+++.+.. +.+
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~----------~~~~lvl~Ptr~La~Q~~~~l~g------~~v 75 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ----------RLRTAVLAPTRVVAAEMAEALRG------LPV 75 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT----------TCCEEEEECSHHHHHHHHHHTTT------SCE
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC----------CCcEEEECchHHHHHHHHHHhcC------ceE
Confidence 33455566788999999999999999999999887653 35689999999999999998862 222
Q ss_pred EEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccch-----hhcCCChHHHHHHHHhcCcCC
Q 039378 286 VCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADR-----MLDMGFEEPVRFILSKISLAR 360 (600)
Q Consensus 286 ~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~-----l~~~~~~~~~~~il~~~~~~~ 360 (600)
....+..... -..+.-+.++|.+.+...+... ..+.++++|||||||+ ++..++... +. .....
T Consensus 76 ~~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~---~~--~~~~~ 144 (459)
T 2z83_A 76 RYQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIAT---KV--ELGEA 144 (459)
T ss_dssp EECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHH---HH--HTTSC
T ss_pred eEEecccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHH---Hh--ccCCc
Confidence 2111111100 1123467789999887766544 4588999999999998 333332211 11 23578
Q ss_pred cEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehh
Q 039378 361 QMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQL 440 (600)
Q Consensus 361 q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~ 440 (600)
|+++||||++..+..+.. ...|+....... ... ....+..++.. ..+++||||+++.
T Consensus 145 ~~il~SAT~~~~~~~~~~---~~~pi~~~~~~~---------------~~~-~~~~~~~~l~~----~~~~~LVF~~s~~ 201 (459)
T 2z83_A 145 AAIFMTATPPGTTDPFPD---SNAPIHDLQDEI---------------PDR-AWSSGYEWITE----YAGKTVWFVASVK 201 (459)
T ss_dssp EEEEECSSCTTCCCSSCC---CSSCEEEEECCC---------------CSS-CCSSCCHHHHH----CCSCEEEECSCHH
T ss_pred cEEEEEcCCCcchhhhcc---CCCCeEEecccC---------------Ccc-hhHHHHHHHHh----cCCCEEEEeCChH
Confidence 999999999976432211 122332221100 000 00011122222 2679999999999
Q ss_pred cHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEE-----------------
Q 039378 441 EADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVIN----------------- 503 (600)
Q Consensus 441 ~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----------------- 503 (600)
.++.++..|...++.+..+||. +|..+++.|++|..+|||||+++++|||+|+ ++||+
T Consensus 202 ~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~ 276 (459)
T 2z83_A 202 MGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRV 276 (459)
T ss_dssp HHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEE
T ss_pred HHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccccccc
Confidence 9999999999999999999995 6888999999999999999999999999999 99999
Q ss_pred ---cCCCCChhhHHHHhhhccCCCC-ccEEEEEEcCC
Q 039378 504 ---YSFPLTTEDYVHRIGRTGRAGK-KGVSHTFFTNH 536 (600)
Q Consensus 504 ---~d~p~s~~~y~qr~GR~gR~g~-~g~~~~~~~~~ 536 (600)
|++|.++.+|+||+||+||.|. .|.|++|++..
T Consensus 277 ~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 277 ILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 99999999886
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=3.4e-37 Score=323.26 Aligned_cols=269 Identities=15% Similarity=0.173 Sum_probs=191.0
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTS 293 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~ 293 (600)
.|+++++++|||||||++|++|++..+... ++++||++||++||.|+++.+. ++.+....++..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~----------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~ 64 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK----------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQ 64 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcc
Confidence 368999999999999999999998776643 3468999999999999998775 234443333321
Q ss_pred hHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhc-CcCCcEEEEeccCChh
Q 039378 294 KQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKI-SLARQMVMFSATWPIE 372 (600)
Q Consensus 294 ~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~-~~~~q~i~~SATl~~~ 372 (600)
. ....+.-+.++|.+.+.+.+.. ...+.++++|||||+|++ ..++......+.... +..+|+++||||+++.
T Consensus 65 ~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 65 S-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGT 137 (431)
T ss_dssp ---------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTC
T ss_pred c-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Confidence 1 1112346778899988776655 455889999999999997 322233333333332 4578999999999875
Q ss_pred HHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC
Q 039378 373 VHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS 452 (600)
Q Consensus 373 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~ 452 (600)
+..+.. ...+....... ... .....+...+. . ..+++||||+++..++.++..|...
T Consensus 138 ~~~~~~---~~~~i~~~~~~---------------~~~-~~~~~~~~~l~---~-~~~~~lVF~~~~~~~~~l~~~L~~~ 194 (431)
T 2v6i_A 138 TEAFPP---SNSPIIDEETR---------------IPD-KAWNSGYEWIT---E-FDGRTVWFVHSIKQGAEIGTCLQKA 194 (431)
T ss_dssp CCSSCC---CSSCCEEEECC---------------CCS-SCCSSCCHHHH---S-CSSCEEEECSSHHHHHHHHHHHHHT
T ss_pred hhhhcC---CCCceeecccc---------------CCH-HHHHHHHHHHH---c-CCCCEEEEeCCHHHHHHHHHHHHHc
Confidence 332111 01111111000 000 01111122222 2 3678999999999999999999999
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCE-----------------EEEcCCCCChhhHHH
Q 039378 453 GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEV-----------------VINYSFPLTTEDYVH 515 (600)
Q Consensus 453 ~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~-----------------VI~~d~p~s~~~y~q 515 (600)
++.+..+||+ +|..+++.|++|+.+|||||+++++|||+| +.+ ||+++.|.+..+|+|
T Consensus 195 ~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Q 269 (431)
T 2v6i_A 195 GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQ 269 (431)
T ss_dssp TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHH
T ss_pred CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHH
Confidence 9999999997 578899999999999999999999999999 655 578899999999999
Q ss_pred HhhhccCCCC-ccEEEEEE
Q 039378 516 RIGRTGRAGK-KGVSHTFF 533 (600)
Q Consensus 516 r~GR~gR~g~-~g~~~~~~ 533 (600)
|+||+||.|. .|.+++|.
T Consensus 270 r~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 270 RRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHTTSSCCTTCCCCEEEEC
T ss_pred hhhccCCCCCCCCeEEEEc
Confidence 9999999985 45555555
No 51
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.3e-36 Score=291.79 Aligned_cols=214 Identities=44% Similarity=0.823 Sum_probs=194.8
Q ss_pred hccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCC
Q 039378 176 YKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRV 253 (600)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~ 253 (600)
+.++.+|.++++++.++..+. ||..|+|+|.++|+.+++|+|++++||||||||++|++|++.++...+.. ....
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~---~~~~ 101 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL---ERGD 101 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC---CTTC
T ss_pred CCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc---ccCC
Confidence 567889999999999999987 89999999999999999999999999999999999999999988765321 1234
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEE
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVV 333 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 333 (600)
++++|||+||++|+.|+++.+..+....++.+..++||.....+...+..+++|+|+||++|.+++......+.++++||
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lV 181 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV 181 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEE
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEE
Confidence 67899999999999999999999988888999999999999888888888899999999999999988888899999999
Q ss_pred EcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCc
Q 039378 334 LDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSE 393 (600)
Q Consensus 334 iDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~ 393 (600)
|||||++.+++|...+..++..++..+|+++||||+|..+..++..++ .+|..+.++..
T Consensus 182 iDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l-~~~~~i~~~~~ 240 (242)
T 3fe2_A 182 LDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL-KDYIHINIGAL 240 (242)
T ss_dssp ETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHC-SSCEEEEECC-
T ss_pred EeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHC-CCCEEEEecCC
Confidence 999999999999999999999999999999999999999999999999 68888887654
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=7.3e-37 Score=335.32 Aligned_cols=308 Identities=18% Similarity=0.202 Sum_probs=189.0
Q ss_pred CCcHHHHHHhhhhhc----C-CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHH-HH
Q 039378 200 NPSPIQSHAWPFLLN----G-RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIY-DV 273 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~----~-~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~-~~ 273 (600)
.|+|+|.++++.++. + ++++++++||+|||+++ ++++..++...... .+...++++|||+||++|+.|+. +.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~~-~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWNR-TGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCCS-SCSSSCCCEEEEEC-----------C
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhccccc-ccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 799999999999876 4 56899999999999995 45555555432100 01123567999999999999999 77
Q ss_pred HHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHc----cCCCccceEEEEEcccchhhcCCChHHH
Q 039378 274 LNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEM----NVCHLSEVSFVVLDEADRMLDMGFEEPV 349 (600)
Q Consensus 274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~----~~~~l~~~~~lViDEah~l~~~~~~~~~ 349 (600)
+..++. ....+.++. ...+++|+|+||++|...+.. ..+....+++|||||||++...+ ...+
T Consensus 256 ~~~~~~----~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~ 322 (590)
T 3h1t_A 256 FTPFGD----ARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNW 322 (590)
T ss_dssp CTTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------C
T ss_pred HHhcch----hhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHH
Confidence 776653 223333221 234579999999999887642 23446679999999999997642 2445
Q ss_pred HHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccc--cCCCeeEEEEEe-------------------
Q 039378 350 RFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLA--ANHDVMQIVEVL------------------- 408 (600)
Q Consensus 350 ~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~------------------- 408 (600)
..++..++ ..++++||||+..........++. .+........... ............
T Consensus 323 ~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~-~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
T 3h1t_A 323 REILEYFE-PAFQIGMTATPLREDNRDTYRYFG-NPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR 400 (590)
T ss_dssp HHHHHHST-TSEEEEEESSCSCTTTHHHHHHSC-SCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------
T ss_pred HHHHHhCC-cceEEEeccccccccchhHHHHcC-CceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccc
Confidence 66777665 367999999977543332333332 1211110000000 000000000000
Q ss_pred -------cC---------cchHHHHHHHHHHHhh--cCCCeEEEEEeehhcHHHHHHHHHhCCCe--------EEEEcCC
Q 039378 409 -------DD---------RSRDQRLLALLEKYHK--SQRNRVLVFALYQLEADRLENMLRRSGWK--------VVAIHGK 462 (600)
Q Consensus 409 -------~~---------~~~~~~l~~~l~~~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~--------~~~l~~~ 462 (600)
.. ..+...+...+..+.. ...+++||||+++.+++.++..|...+.. +..+||.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~ 480 (590)
T 3h1t_A 401 EIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSE 480 (590)
T ss_dssp --------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSST
T ss_pred ccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCC
Confidence 00 0111222222222211 34579999999999999999999876432 7889999
Q ss_pred CCHHHHHHHHHHHhcCCCC---EEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCC
Q 039378 463 KAQHERTKSLSLFKEGTCP---LMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGK 525 (600)
Q Consensus 463 ~~~~~r~~~~~~F~~g~~~---vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~ 525 (600)
++. +|..+++.|++|... |||||+++++|||+|++++||++++|+++..|+||+||+||.|.
T Consensus 481 ~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 481 EGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp THH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred ChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 864 799999999998765 88999999999999999999999999999999999999999875
No 53
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.5e-35 Score=318.85 Aligned_cols=323 Identities=15% Similarity=0.207 Sum_probs=218.2
Q ss_pred CCCcHHHHHHhhhhh----cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHH
Q 039378 199 KNPSPIQSHAWPFLL----NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il----~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~ 274 (600)
..|+|+|.+++.++. .++++|++++||+|||+++ ++++..+..... ..++|||||+ .|+.||.+++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~a-i~~i~~~~~~~~--------~~~~LIv~P~-~l~~qw~~e~ 105 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQT-IAVFSDAKKENE--------LTPSLVICPL-SVLKNWEEEL 105 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHH-HHHHHHHHHTTC--------CSSEEEEECS-TTHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHH-HHHHHHHHhcCC--------CCCEEEEccH-HHHHHHHHHH
Confidence 368999999999874 5778999999999999985 445555543321 2348999996 6889999999
Q ss_pred HHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHH
Q 039378 275 NDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILS 354 (600)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~ 354 (600)
.++... +++..+.|+... .....++|+|+||+.|..... +....|++||+||||++.+.+ ......+.
T Consensus 106 ~~~~~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~ 173 (500)
T 1z63_A 106 SKFAPH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVK 173 (500)
T ss_dssp HHHCTT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHH
T ss_pred HHHCCC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHH
Confidence 999754 455555554422 112347999999999865433 234578999999999998754 33444555
Q ss_pred hcCcCCcEEEEeccCChh-HHHH------------------------------------HHHhcCCCCeEEEECCcc---
Q 039378 355 KISLARQMVMFSATWPIE-VHKL------------------------------------AEEYMDPNPVKVVVGSED--- 394 (600)
Q Consensus 355 ~~~~~~q~i~~SATl~~~-~~~~------------------------------------~~~~~~~~~~~i~~~~~~--- 394 (600)
.++ ..+++++|||+... ..++ ....+ .+..+......
T Consensus 174 ~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l--~~~~lrr~k~~~~~ 250 (500)
T 1z63_A 174 ELK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII--SPFILRRTKYDKAI 250 (500)
T ss_dssp TSC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH--TTTEECCCTTCHHH
T ss_pred hhc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH--hhHeeeecccccch
Confidence 554 45789999997431 1111 11111 12222111110
Q ss_pred cccCCCeeEEEEEec---------------------------------------------------------CcchHHHH
Q 039378 395 LAANHDVMQIVEVLD---------------------------------------------------------DRSRDQRL 417 (600)
Q Consensus 395 ~~~~~~~~~~~~~~~---------------------------------------------------------~~~~~~~l 417 (600)
.............+. ...+...+
T Consensus 251 ~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l 330 (500)
T 1z63_A 251 INDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRT 330 (500)
T ss_dssp HTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHH
T ss_pred hhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHH
Confidence 000011111111111 01222333
Q ss_pred HHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHHHhcC-CCC-EEEeccccccCCC
Q 039378 418 LALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS-GWKVVAIHGKKAQHERTKSLSLFKEG-TCP-LMVATDVAARGLD 494 (600)
Q Consensus 418 ~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~F~~g-~~~-vLvaT~~~~~Gld 494 (600)
..++..+.. .+.++||||++...++.+...|... ++.+..+||++++.+|..+++.|++| ... +|+||+++++|+|
T Consensus 331 ~~~l~~~~~-~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Gln 409 (500)
T 1z63_A 331 MEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGIN 409 (500)
T ss_dssp HHHHHHHHT-TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCC
T ss_pred HHHHHHHHc-cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCc
Confidence 344443322 4679999999999999999999885 99999999999999999999999998 454 7999999999999
Q ss_pred CCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEE--EEEcCCcHhHHHHHHHHHH
Q 039378 495 IPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSH--TFFTNHNKALAGELVNVLR 549 (600)
Q Consensus 495 i~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~--~~~~~~d~~~~~~i~~~l~ 549 (600)
++++++||+||+|||+..|.||+||++|.|+.+.++ .|+.... .-+.+...+.
T Consensus 410 l~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t--iee~i~~~~~ 464 (500)
T 1z63_A 410 LTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT--LEEKIDQLLA 464 (500)
T ss_dssp CTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTS--HHHHTHHHHT
T ss_pred hhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC--HHHHHHHHHH
Confidence 999999999999999999999999999999987664 4455443 3344444443
No 54
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=7.2e-36 Score=341.38 Aligned_cols=335 Identities=17% Similarity=0.149 Sum_probs=225.0
Q ss_pred CCCcHHHHHHhhhhhcC--CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 199 KNPSPIQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~--~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
..|+|+|.+++.+++.. .++|++++||+|||++++..+...+.... ..++|||||+ .|+.||...+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~---------~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA---------AERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS---------CCCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC---------CCeEEEEeCH-HHHHHHHHHHHH
Confidence 47999999999998864 47999999999999997665444433222 2248999999 999999999977
Q ss_pred hcCCCCceEEEEeCCCChHHHHH---HHhcCCcEEEEchHHHHHHHHc-cCCCccceEEEEEcccchhhcCCCh--HHHH
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQIT---ALRSGVDIVIGTPGRLIDLIEM-NVCHLSEVSFVVLDEADRMLDMGFE--EPVR 350 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~---~l~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~~~~lViDEah~l~~~~~~--~~~~ 350 (600)
.. ++.+..+.++ ....... ......+|+|+|++.|...... ..+....|++|||||||++.+.+.. ....
T Consensus 222 ~f---~l~v~v~~~~-~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~ 297 (968)
T 3dmq_A 222 RF---NLRFALFDDE-RYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQ 297 (968)
T ss_dssp HS---CCCCEECCHH-HHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHH
T ss_pred Hh---CCCEEEEccc-hhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHH
Confidence 65 3444443332 2211111 1112479999999988542111 1123457999999999999865432 1222
Q ss_pred HHHHhcCcCCcEEEEeccCCh----hHHHHH----------------------------HHhcCCC--------------
Q 039378 351 FILSKISLARQMVMFSATWPI----EVHKLA----------------------------EEYMDPN-------------- 384 (600)
Q Consensus 351 ~il~~~~~~~q~i~~SATl~~----~~~~~~----------------------------~~~~~~~-------------- 384 (600)
.+.......++++++|||+.. ++..+. ..+....
T Consensus 298 ~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l 377 (968)
T 3dmq_A 298 AIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMI 377 (968)
T ss_dssp HHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTT
T ss_pred HHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHh
Confidence 333333345679999999732 111100 0000000
Q ss_pred -------------------------------------CeEEEECCcccccC--CCeeEEEE-------------------
Q 039378 385 -------------------------------------PVKVVVGSEDLAAN--HDVMQIVE------------------- 406 (600)
Q Consensus 385 -------------------------------------~~~i~~~~~~~~~~--~~~~~~~~------------------- 406 (600)
...+.......... ........
T Consensus 378 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~ 457 (968)
T 3dmq_A 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGAR 457 (968)
T ss_dssp CTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCC
T ss_pred cchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhh
Confidence 00000000000000 00000000
Q ss_pred --------------------------EecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHh-CCCeEEEE
Q 039378 407 --------------------------VLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRR-SGWKVVAI 459 (600)
Q Consensus 407 --------------------------~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~-~~~~~~~l 459 (600)
......+...+..++.. ..++++||||+++..++.++..|.. .|+.+..+
T Consensus 458 ~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~---~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~l 534 (968)
T 3dmq_A 458 KSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS---HRSQKVLVICAKAATALQLEQVLREREGIRAAVF 534 (968)
T ss_dssp SSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH---TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEE
T ss_pred hhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh---CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEE
Confidence 01112234444444443 4578999999999999999999995 59999999
Q ss_pred cCCCCHHHHHHHHHHHhcCC--CCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCc
Q 039378 460 HGKKAQHERTKSLSLFKEGT--CPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHN 537 (600)
Q Consensus 460 ~~~~~~~~r~~~~~~F~~g~--~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d 537 (600)
||+|++.+|..+++.|++|+ ++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++++....
T Consensus 535 hG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~ 614 (968)
T 3dmq_A 535 HEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLE 614 (968)
T ss_dssp CTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEET
T ss_pred eCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCC
Confidence 99999999999999999998 9999999999999999999999999999999999999999999999997777766555
Q ss_pred HhHHHHHHHHHHH
Q 039378 538 KALAGELVNVLRE 550 (600)
Q Consensus 538 ~~~~~~i~~~l~~ 550 (600)
....+.|...+.+
T Consensus 615 ~t~ee~i~~~~~~ 627 (968)
T 3dmq_A 615 KTAQSVLVRWYHE 627 (968)
T ss_dssp TSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHh
Confidence 5555566666543
No 55
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.2e-35 Score=320.08 Aligned_cols=294 Identities=21% Similarity=0.201 Sum_probs=214.0
Q ss_pred CHHHHHhhcCCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHH
Q 039378 188 PDDVLGCCKNFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELA 267 (600)
Q Consensus 188 ~~~l~~~~~~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La 267 (600)
..+.+..+..+..|. |.......+++++++++||||||||+ +++..+..... ++|++|||+||
T Consensus 130 ~~d~l~~i~dl~~p~--~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~~~-----------gl~l~PtR~LA 192 (677)
T 3rc3_A 130 CKDDLRKISDLRIPP--NWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSAKS-----------GVYCGPLKLLA 192 (677)
T ss_dssp CHHHHHHHTBCCCGG--GGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHSSS-----------EEEEESSHHHH
T ss_pred CHHHHHHHhhccChh--hhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhcCC-----------eEEEeCHHHHH
Confidence 344444555555543 33444456789999999999999998 34455544321 48999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChH
Q 039378 268 DQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEE 347 (600)
Q Consensus 268 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~ 347 (600)
.|+++.+... ++.+..++|+..... .......+++++|++.+. ....+++|||||||++.+.+++.
T Consensus 193 ~Qi~~~l~~~----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~ 258 (677)
T 3rc3_A 193 HEIFEKSNAA----GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGW 258 (677)
T ss_dssp HHHHHHHHHT----TCCEEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHH
T ss_pred HHHHHHHHhc----CCcEEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchH
Confidence 9999999887 467778888765410 000112578888875441 35678999999999999999999
Q ss_pred HHHHHHHhcC-cCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhh
Q 039378 348 PVRFILSKIS-LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHK 426 (600)
Q Consensus 348 ~~~~il~~~~-~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 426 (600)
.+..++..++ ...+++++|||. +.+..+.... .....+..... ..... ..... +..+..
T Consensus 259 ~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~--~~~~~v~~~~r----~~~l~----~~~~~---------l~~l~~ 318 (677)
T 3rc3_A 259 AWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTT--GEEVEVRDYKR----LTPIS----VLDHA---------LESLDN 318 (677)
T ss_dssp HHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH--TCCEEEEECCC----SSCEE----ECSSC---------CCSGGG
T ss_pred HHHHHHHccCccceEEEeccchH-HHHHHHHHhc--CCceEEEEeee----cchHH----HHHHH---------HHHHHh
Confidence 8888888887 677999999995 3344444433 22333221111 00000 00000 000111
Q ss_pred cCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhc--CCCCEEEeccccccCCCCCCcCEEEEc
Q 039378 427 SQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE--GTCPLMVATDVAARGLDIPDVEVVINY 504 (600)
Q Consensus 427 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~--g~~~vLvaT~~~~~Gldi~~v~~VI~~ 504 (600)
. ..+.+|||+++..++.++..|...++.+..+||+|++.+|..+++.|+. |.++|||||+++++|||+ ++++||++
T Consensus 319 ~-~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~ 396 (677)
T 3rc3_A 319 L-RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFY 396 (677)
T ss_dssp C-CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEES
T ss_pred c-CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEEC
Confidence 1 3456899999999999999999999999999999999999999999999 889999999999999999 99999999
Q ss_pred CC--------------CCChhhHHHHhhhccCCCCc---cEEEEEEc
Q 039378 505 SF--------------PLTTEDYVHRIGRTGRAGKK---GVSHTFFT 534 (600)
Q Consensus 505 d~--------------p~s~~~y~qr~GR~gR~g~~---g~~~~~~~ 534 (600)
++ |.+..+|+||+|||||.|.. |.|+.++.
T Consensus 397 ~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 397 SLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp CSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred CccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 99 88999999999999999964 66655543
No 56
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=294.38 Aligned_cols=204 Identities=32% Similarity=0.473 Sum_probs=178.3
Q ss_pred hccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcC--CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCC
Q 039378 176 YKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGK 251 (600)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~--~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~ 251 (600)
+....+|.++++++.++..+. ||..|+|+|.++||.++.+ +|++++||||||||++|++|++.++....
T Consensus 88 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~------- 160 (300)
T 3fmo_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN------- 160 (300)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS-------
T ss_pred cCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC-------
Confidence 345788999999999999987 9999999999999999998 89999999999999999999998865432
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHc-cCCCccce
Q 039378 252 RVNPLCLVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEM-NVCHLSEV 329 (600)
Q Consensus 252 ~~~~~~liv~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~~ 329 (600)
.++++|||+|||+||.|+++.+..++... ++.+...+|+....... ..+++|+|+||++|++++.+ ..+.+.++
T Consensus 161 -~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 161 -KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred -CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 36779999999999999999999998764 57788888876543322 45689999999999999965 45678999
Q ss_pred EEEEEcccchhhc-CCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEEC
Q 039378 330 SFVVLDEADRMLD-MGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVG 391 (600)
Q Consensus 330 ~~lViDEah~l~~-~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~ 391 (600)
++|||||||+|++ .+|...+..++..++..+|+++||||++..+..++..++ .+|..+.+.
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l-~~p~~i~~~ 298 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV-PDPNVIKLK 298 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHS-SSCEEEEEC
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHC-CCCeEEEec
Confidence 9999999999998 688899999999999999999999999999999999999 788887764
No 57
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=6.9e-34 Score=300.19 Aligned_cols=331 Identities=20% Similarity=0.191 Sum_probs=241.1
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+++|..+...+..|+ |..+.||+|||+++.+|++...+... .|.||+|++.||.|-.+++..+..
T Consensus 75 r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~-----------~vhVvT~ndyLA~rdae~m~~l~~ 141 (822)
T 3jux_A 75 RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGK-----------GVHLVTVNDYLARRDALWMGPVYL 141 (822)
T ss_dssp CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSS-----------CEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCC-----------ceEEEeccHHHHHhHHHHHHHHHH
Confidence 68999999999999887 89999999999999999987766533 289999999999999999999999
Q ss_pred CCCceEEEEeCC--------------------------------------------------CChHHHHHHHhcCCcEEE
Q 039378 280 PCGVKSVCVYGG--------------------------------------------------TSKQPQITALRSGVDIVI 309 (600)
Q Consensus 280 ~~~~~~~~~~~g--------------------------------------------------~~~~~~~~~l~~~~~Iiv 309 (600)
.+|+.+.+++.. ........ .-.|||..
T Consensus 142 ~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~--aY~~DItY 219 (822)
T 3jux_A 142 FLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE--AYLCDVTY 219 (822)
T ss_dssp HTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH--HHHSSEEE
T ss_pred HhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH--HhcCCCEE
Confidence 999999998872 11111111 11389999
Q ss_pred EchHHH-HHHHHcc------CCCccceEEEEEcccchhhcC---------C----Ch---HHHHHHHHhcC---------
Q 039378 310 GTPGRL-IDLIEMN------VCHLSEVSFVVLDEADRMLDM---------G----FE---EPVRFILSKIS--------- 357 (600)
Q Consensus 310 ~Tp~~l-~~~l~~~------~~~l~~~~~lViDEah~l~~~---------~----~~---~~~~~il~~~~--------- 357 (600)
+|..-| .++|+.+ ......+.+.||||+|.++=. | .. ..+..+...+.
T Consensus 220 gTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vde 299 (822)
T 3jux_A 220 GTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDE 299 (822)
T ss_dssp EEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECC
T ss_pred ccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEc
Confidence 999887 4555533 223467899999999976410 0 00 00011111110
Q ss_pred -----------------------------------------------cC-------------------------------
Q 039378 358 -----------------------------------------------LA------------------------------- 359 (600)
Q Consensus 358 -----------------------------------------------~~------------------------------- 359 (600)
.+
T Consensus 300 k~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLH 379 (822)
T 3jux_A 300 KARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLH 379 (822)
T ss_dssp SSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHH
T ss_pred ccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHH
Confidence 00
Q ss_pred ------------------------------CcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEec
Q 039378 360 ------------------------------RQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLD 409 (600)
Q Consensus 360 ------------------------------~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 409 (600)
.++.+||+|+......+...|- . .++.+..... .............
T Consensus 380 QaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~-l--~vv~IPtnkp-~~R~d~~d~vy~t 455 (822)
T 3jux_A 380 QAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG-M--EVVVIPTHKP-MIRKDHDDLVFRT 455 (822)
T ss_dssp HHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC-C--CEEECCCSSC-CCCEECCCEEESS
T ss_pred HHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC-C--eEEEECCCCC-cceeecCcEEEec
Confidence 3689999999887777665553 2 2333333221 1111111223445
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecccc
Q 039378 410 DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVA 489 (600)
Q Consensus 410 ~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~ 489 (600)
...+...+...+..... .+.++||||+|+..++.|+..|...|+++..+||+..+.+|..+...|+.| .|+|||+++
T Consensus 456 ~~eK~~al~~~I~~~~~-~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmA 532 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYK-KGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMA 532 (822)
T ss_dssp HHHHHHHHHHHHHHHHH-HTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhh-CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchh
Confidence 55666777776665432 357899999999999999999999999999999997666666666666666 599999999
Q ss_pred ccCCCCC--------CcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHH----HHHHHHHHHhc
Q 039378 490 ARGLDIP--------DVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALA----GELVNVLREAR 552 (600)
Q Consensus 490 ~~Gldi~--------~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~----~~i~~~l~~~~ 552 (600)
+||+||+ +..+||+|++|.+...|.||+|||||.|.+|.+++|++.+|..+. ..+..++...+
T Consensus 533 gRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~ 607 (822)
T 3jux_A 533 GRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILK 607 (822)
T ss_dssp TTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSS
T ss_pred hCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcC
Confidence 9999998 667999999999999999999999999999999999999985442 45555555543
No 58
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=281.25 Aligned_cols=207 Identities=41% Similarity=0.619 Sum_probs=187.2
Q ss_pred hccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCC
Q 039378 176 YKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRV 253 (600)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~ 253 (600)
.....+|.++++++.++..+. ||..|+++|.++++.+++++++++++|||+|||++|++|++..+.....
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~-------- 110 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQ-------- 110 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCC--------
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCC--------
Confidence 456788999999999999987 8999999999999999999999999999999999999999988876532
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHc-cCCCccceEEE
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEM-NVCHLSEVSFV 332 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~~~~l 332 (600)
++++||++||++|+.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.+++.. ..+.+.++++|
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~l 190 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYL 190 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEE
Confidence 45689999999999999999999988778899999999988887777888899999999999998875 45668899999
Q ss_pred EEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEEC
Q 039378 333 VLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVG 391 (600)
Q Consensus 333 ViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~ 391 (600)
|+||||++.+++|...+..++..++..+|+++||||++..+..++..++ .+|..+.++
T Consensus 191 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l-~~p~~i~v~ 248 (249)
T 3ber_A 191 VMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAAL-KNPVKCAVS 248 (249)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHC-SSCEEEECC
T ss_pred EEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHC-CCCEEEEec
Confidence 9999999999999999999999999899999999999999999999998 678777543
No 59
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-34 Score=321.30 Aligned_cols=320 Identities=15% Similarity=0.225 Sum_probs=221.5
Q ss_pred CCCcHHHHHHhhhhh----cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHH
Q 039378 199 KNPSPIQSHAWPFLL----NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVL 274 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il----~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~ 274 (600)
..++|+|.+++.+++ .++++|++++||+|||++++.. +..++..... ...+||||| ..|+.||.++|
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~-i~~l~~~~~~-------~~~~LIV~P-~sll~qW~~E~ 305 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAF-ISWLIFARRQ-------NGPHIIVVP-LSTMPAWLDTF 305 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHH-HHHHHHHHSC-------CSCEEEECC-TTTHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHH-HHHHHHhcCC-------CCCEEEEEC-chHHHHHHHHH
Confidence 378999999999887 7889999999999999985443 4444322111 223799999 58889999999
Q ss_pred HHhcCCCCceEEEEeCCCChHHHHHHH------------hcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhc
Q 039378 275 NDAGKPCGVKSVCVYGGTSKQPQITAL------------RSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLD 342 (600)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~l------------~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~ 342 (600)
.++... +.+++.+|+.......... ...++|+|+||+.+...... +....|++|||||||++.+
T Consensus 306 ~~~~p~--~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn 381 (800)
T 3mwy_W 306 EKWAPD--LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKN 381 (800)
T ss_dssp HHHSTT--CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCC
T ss_pred HHHCCC--ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcC
Confidence 999853 5556666655444333221 23478999999999764321 2234789999999999977
Q ss_pred CCChHHHHHHHHhcCcCCcEEEEeccCC----hhHHHHHHHhcCC-----------------------------CCeEEE
Q 039378 343 MGFEEPVRFILSKISLARQMVMFSATWP----IEVHKLAEEYMDP-----------------------------NPVKVV 389 (600)
Q Consensus 343 ~~~~~~~~~il~~~~~~~q~i~~SATl~----~~~~~~~~~~~~~-----------------------------~~~~i~ 389 (600)
.+ ..+...+..+. ....+++|||+- .++..++. ++.+ .|..+.
T Consensus 382 ~~--s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~-fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lR 457 (800)
T 3mwy_W 382 AE--SSLYESLNSFK-VANRMLITGTPLQNNIKELAALVN-FLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILR 457 (800)
T ss_dssp SS--SHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHH-HHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEE
T ss_pred ch--hHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHH-HhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhh
Confidence 43 34455555553 456799999962 11111111 1101 112221
Q ss_pred ECCccccc-CCCeeEEEEEec-----------------------------------------------------------
Q 039378 390 VGSEDLAA-NHDVMQIVEVLD----------------------------------------------------------- 409 (600)
Q Consensus 390 ~~~~~~~~-~~~~~~~~~~~~----------------------------------------------------------- 409 (600)
........ ..........+.
T Consensus 458 R~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 537 (800)
T 3mwy_W 458 RLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKF 537 (800)
T ss_dssp CCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC
T ss_pred hhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhc
Confidence 11111000 000000011100
Q ss_pred ----------------CcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHH
Q 039378 410 ----------------DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLS 473 (600)
Q Consensus 410 ----------------~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~ 473 (600)
...+...+..++..+. ..++++||||+...+++.|..+|...|+.+..+||+++..+|..+++
T Consensus 538 ~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~-~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~ 616 (800)
T 3mwy_W 538 GDGKMTRENVLRGLIMSSGKMVLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISID 616 (800)
T ss_dssp ----CCSHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHH
T ss_pred ccccccHHHHHHHhhhcChHHHHHHHHHHHHh-hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHH
Confidence 1123334444555443 24679999999999999999999999999999999999999999999
Q ss_pred HHhcCCC---CEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEE--EEEEcCC
Q 039378 474 LFKEGTC---PLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS--HTFFTNH 536 (600)
Q Consensus 474 ~F~~g~~---~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~--~~~~~~~ 536 (600)
.|+++.. .+|++|.+++.|||++.+++||+||+|||+..+.||+||++|.|+...+ +.|++..
T Consensus 617 ~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 617 HFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp TTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred HhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 9998644 5999999999999999999999999999999999999999999987655 4455555
No 60
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.8e-35 Score=279.28 Aligned_cols=211 Identities=42% Similarity=0.673 Sum_probs=179.6
Q ss_pred hhcccccccc-CCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCC
Q 039378 175 KYKALKSFTE-SKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGK 251 (600)
Q Consensus 175 ~~~~~~~~~~-~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~ 251 (600)
.+.+...|.+ +++++.+++.+. ||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.++....... ..
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~--~~ 91 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR--EQ 91 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC----------
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh--hc
Confidence 4667788988 799999999987 999999999999999999999999999999999999999998876542211 12
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEE
Q 039378 252 RVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331 (600)
Q Consensus 252 ~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~ 331 (600)
..++++||++||++|+.|+++.+..+. ..++.+..++||.....+...+..+++|+|+||++|.+++......+.++++
T Consensus 92 ~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 92 RNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp -CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence 346779999999999999999999986 4578889999999888888888888999999999999999888888999999
Q ss_pred EEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEE
Q 039378 332 VVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVV 389 (600)
Q Consensus 332 lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~ 389 (600)
|||||||++.+++|...+..++..++..+|+++||||+|..+..++..++ .+|..+.
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l-~~p~~i~ 227 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYL-KDPMIVY 227 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTC-SSCEEEE
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHC-CCCEEEe
Confidence 99999999999999999999999999999999999999999999999988 6776654
No 61
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-33 Score=309.58 Aligned_cols=326 Identities=18% Similarity=0.224 Sum_probs=219.5
Q ss_pred CCcHHHHHHhhhhh---------cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHH
Q 039378 200 NPSPIQSHAWPFLL---------NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQI 270 (600)
Q Consensus 200 ~~~~~Q~~~i~~il---------~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~ 270 (600)
.++|+|.+++.++. .+..+|++++||+|||++++.. +..++..... ......++|||||+ .|+.||
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~-i~~l~~~~~~---~~p~~~~~LiV~P~-sll~qW 129 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITL-IWTLLKQSPD---CKPEIDKVIVVSPS-SLVRNW 129 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHH-HHHHHHCCTT---SSCSCSCEEEEECH-HHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHH-HHHHHHhCcc---ccCCCCcEEEEecH-HHHHHH
Confidence 58899999999985 3457899999999999985544 4444443211 11123458999997 889999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCChHHH--HHHH-h-----cCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhc
Q 039378 271 YDVLNDAGKPCGVKSVCVYGGTSKQPQ--ITAL-R-----SGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLD 342 (600)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~l-~-----~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~ 342 (600)
.+++.++... .+.++.+++|...... .... . ..++|+|+||+.+.... ..+....|++||+||||++.+
T Consensus 130 ~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 130 YNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCT
T ss_pred HHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCC
Confidence 9999998754 4556666666533211 1111 1 13789999999987643 233445789999999999987
Q ss_pred CCChHHHHHHHHhcCcCCcEEEEeccCChhH----H---------------HHHHHhcC---------------------
Q 039378 343 MGFEEPVRFILSKISLARQMVMFSATWPIEV----H---------------KLAEEYMD--------------------- 382 (600)
Q Consensus 343 ~~~~~~~~~il~~~~~~~q~i~~SATl~~~~----~---------------~~~~~~~~--------------------- 382 (600)
.. ......+..+. ..+.+++|||+-..- . .+...|..
T Consensus 207 ~~--~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~ 283 (644)
T 1z3i_X 207 SD--NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQK 283 (644)
T ss_dssp TC--HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHH
T ss_pred hh--hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHH
Confidence 43 33444444453 457899999963210 0 00000000
Q ss_pred -------CCCeEEEECCcccc--cCCCeeEEEEEe---------------------------------------------
Q 039378 383 -------PNPVKVVVGSEDLA--ANHDVMQIVEVL--------------------------------------------- 408 (600)
Q Consensus 383 -------~~~~~i~~~~~~~~--~~~~~~~~~~~~--------------------------------------------- 408 (600)
..+..+........ .+........+.
T Consensus 284 ~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp 363 (644)
T 1z3i_X 284 LQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHP 363 (644)
T ss_dssp HHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCH
Confidence 00001100000000 000000000000
Q ss_pred --------------------------------cCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeE
Q 039378 409 --------------------------------DDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKV 456 (600)
Q Consensus 409 --------------------------------~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~ 456 (600)
....+...+..++..+....+.++||||++..+++.+...|...|+.+
T Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~ 443 (644)
T 1z3i_X 364 ALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLY 443 (644)
T ss_dssp HHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCE
Confidence 001122333344444433457899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCC---CEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEE--EE
Q 039378 457 VAIHGKKAQHERTKSLSLFKEGTC---PLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS--HT 531 (600)
Q Consensus 457 ~~l~~~~~~~~r~~~~~~F~~g~~---~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~--~~ 531 (600)
..+||+++..+|..+++.|++|.. .+||+|+++++|||++++++||+||+|||+..|.||+||++|.|+...+ +.
T Consensus 444 ~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~ 523 (644)
T 1z3i_X 444 VRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 523 (644)
T ss_dssp EEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEE
Confidence 999999999999999999999865 3899999999999999999999999999999999999999999987654 45
Q ss_pred EEcCC
Q 039378 532 FFTNH 536 (600)
Q Consensus 532 ~~~~~ 536 (600)
|++..
T Consensus 524 lv~~~ 528 (644)
T 1z3i_X 524 LLSTG 528 (644)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 56555
No 62
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2.1e-34 Score=281.13 Aligned_cols=217 Identities=40% Similarity=0.650 Sum_probs=188.0
Q ss_pred ccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccC-ccCCCCC
Q 039378 177 KALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKG-KAVGKRV 253 (600)
Q Consensus 177 ~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~-~~~~~~~ 253 (600)
.++.+|.++++++.+++++. ||..|+|+|.++++.++.++|+++++|||+|||++|++|++.++...... .......
T Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 20 NVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp SCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred CccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 36778999999999999887 89999999999999999999999999999999999999999988765321 1111234
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEE
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVV 333 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 333 (600)
++++|||+||++|+.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.+++......+.++++||
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 57899999999999999999999988888999999999988888888888899999999999999988877889999999
Q ss_pred EcccchhhcCCChHHHHHHHHhc--Cc--CCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcc
Q 039378 334 LDEADRMLDMGFEEPVRFILSKI--SL--ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSED 394 (600)
Q Consensus 334 iDEah~l~~~~~~~~~~~il~~~--~~--~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~ 394 (600)
+||||++++++|...+..++..+ +. .+|+++||||++..+..+...++ .+|..+.++...
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l-~~~~~i~~~~~~ 243 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFL-YNYIFMTVGRVG 243 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHC-SSCEEEEEC---
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHc-CCCEEEEECCCC
Confidence 99999999999999999999854 33 67999999999999999999999 678888776543
No 63
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.7e-34 Score=268.68 Aligned_cols=200 Identities=34% Similarity=0.563 Sum_probs=180.2
Q ss_pred cccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceE
Q 039378 180 KSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLC 257 (600)
Q Consensus 180 ~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~ 257 (600)
.+|+++++++.+++.+. ||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.... .++++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------~~~~~ 74 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK--------DNIQA 74 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS--------CSCCE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC--------CCeeE
Confidence 46899999999999987 889999999999999999999999999999999999999988764322 25679
Q ss_pred EEEcccHHHHHHHHHHHHHhcCCC-CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcc
Q 039378 258 LVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDE 336 (600)
Q Consensus 258 liv~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDE 336 (600)
||++||++|+.|+++.+..+.... ++.+..++|+.........+..+++|+|+||++|.+.+......+.++++||+||
T Consensus 75 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 154 (206)
T 1vec_A 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDE 154 (206)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEET
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEC
Confidence 999999999999999999998776 6888899999888887777778899999999999999988777889999999999
Q ss_pred cchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEE
Q 039378 337 ADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKV 388 (600)
Q Consensus 337 ah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i 388 (600)
||++.+.+|...+..++..++...|+++||||+|..+..++..++ .+|..+
T Consensus 155 ah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l-~~p~~i 205 (206)
T 1vec_A 155 ADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHL-EKPYEI 205 (206)
T ss_dssp HHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHC-SSCEEE
T ss_pred hHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHc-CCCeEe
Confidence 999999999999999999998899999999999999999999998 566544
No 64
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.9e-34 Score=278.44 Aligned_cols=207 Identities=32% Similarity=0.534 Sum_probs=174.1
Q ss_pred hccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCC
Q 039378 176 YKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRV 253 (600)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~ 253 (600)
+.+..+|+++++++.+++.+. ||..|+|+|.++++.+++++|+++++|||+|||++|++|++..+.... .
T Consensus 26 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~--------~ 97 (237)
T 3bor_A 26 NEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF--------K 97 (237)
T ss_dssp -CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS--------C
T ss_pred CCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC--------C
Confidence 345678999999999999887 999999999999999999999999999999999999999988764321 2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcC-CcEEEEchHHHHHHHHccCCCccceEEE
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSG-VDIVIGTPGRLIDLIEMNVCHLSEVSFV 332 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~~~~l 332 (600)
++++||++||++|+.|+++.+..++...++.+..++||.....+...+..+ ++|+|+||++|.+.+......+.++++|
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF 177 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEE
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEE
Confidence 567999999999999999999999988888889999998877776666655 8999999999999998877788999999
Q ss_pred EEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEEC
Q 039378 333 VLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVG 391 (600)
Q Consensus 333 ViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~ 391 (600)
|+||||++.+++|...+..++..++...|+++||||+|..+..++..++ .+|..+.+.
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l-~~p~~i~v~ 235 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFM-RDPIRILVK 235 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHC-SSCEEEC--
T ss_pred EECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHC-CCCEEEEec
Confidence 9999999999999999999999999899999999999999999999998 577776543
No 65
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=272.38 Aligned_cols=210 Identities=32% Similarity=0.519 Sum_probs=183.1
Q ss_pred hccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCC
Q 039378 176 YKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRV 253 (600)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~ 253 (600)
+.+..+|.++++++.++..+. ||..|+|+|.++++.+++++++++++|||+|||++|++|++..+...... ...
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~----~~~ 96 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT----STD 96 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC----GGG
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc----ccC
Confidence 345678999999999999987 89999999999999999999999999999999999999999888764321 123
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc-CCCccceEEE
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN-VCHLSEVSFV 332 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~l 332 (600)
++++||++||++|+.|+++.+..++...++.+..++|+.........+ .+++|+|+||++|.+++... ...+.++++|
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~l 175 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQML 175 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEE
Confidence 667999999999999999999999988889999999998776665555 46999999999999988664 4667899999
Q ss_pred EEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEEC
Q 039378 333 VLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVG 391 (600)
Q Consensus 333 ViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~ 391 (600)
|+||||++.+++|...+..++..++..+|+++||||++..+..+...++ .+|..+.+.
T Consensus 176 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~-~~p~~i~~~ 233 (236)
T 2pl3_A 176 VLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSL-KNPEYVWVH 233 (236)
T ss_dssp EETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSC-SSCEEEECC
T ss_pred EEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhC-CCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999888 678777654
No 66
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.8e-34 Score=275.22 Aligned_cols=205 Identities=36% Similarity=0.542 Sum_probs=181.0
Q ss_pred ccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCce
Q 039378 179 LKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPL 256 (600)
Q Consensus 179 ~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~ 256 (600)
..+|+++++++.+++.+. ||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.... .+++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--------~~~~ 74 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER--------AEVQ 74 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS--------CSCC
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc--------CCce
Confidence 357999999999999987 899999999999999999999999999999999999999988765432 2567
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCC----CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEE
Q 039378 257 CLVLSPTRELADQIYDVLNDAGKPC----GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFV 332 (600)
Q Consensus 257 ~liv~Ptr~La~q~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~l 332 (600)
+||++||++|+.|+++.+.++.... ++.+..++||.........+..+++|+|+||++|.+.+......+.++++|
T Consensus 75 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~l 154 (219)
T 1q0u_A 75 AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHIL 154 (219)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEE
Confidence 9999999999999999999988766 678888888887666555556678999999999999998877788999999
Q ss_pred EEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECC
Q 039378 333 VLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGS 392 (600)
Q Consensus 333 ViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~ 392 (600)
|+||||++.++++...+..++..++...|+++||||+|..+..++..++ .+|..+.+..
T Consensus 155 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~-~~p~~~~~~~ 213 (219)
T 1q0u_A 155 VVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYM-ENPTFVHVLE 213 (219)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHC-SSCEEEECC-
T ss_pred EEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHc-CCCeEEEeec
Confidence 9999999999999999999999998889999999999999999999998 6787776543
No 67
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=8.4e-34 Score=272.62 Aligned_cols=204 Identities=33% Similarity=0.531 Sum_probs=177.6
Q ss_pred hccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCC
Q 039378 176 YKALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRV 253 (600)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~ 253 (600)
+.+..+|+++++++.++..+. ||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+.... .
T Consensus 20 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--------~ 91 (230)
T 2oxc_A 20 LAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN--------L 91 (230)
T ss_dssp ----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS--------C
T ss_pred CCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC--------C
Confidence 345678999999999999987 899999999999999999999999999999999999999988765432 2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEE
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFV 332 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~l 332 (600)
++++||++||++|+.|+++.+..++... ++++..++||.........+ .+++|+|+||++|.+++......+.++++|
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~l 170 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLF 170 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEE
Confidence 5679999999999999999999998665 78888889988776665554 469999999999999998877788999999
Q ss_pred EEcccchhhcCC-ChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEE
Q 039378 333 VLDEADRMLDMG-FEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVV 389 (600)
Q Consensus 333 ViDEah~l~~~~-~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~ 389 (600)
|+||||++.+++ |...+..++..++..+|+++||||++..+..+...++ .+|..+.
T Consensus 171 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~-~~p~~i~ 227 (230)
T 2oxc_A 171 ILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYM-RDPTFVR 227 (230)
T ss_dssp EESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTC-SSCEEEC
T ss_pred EeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHc-CCCeEEE
Confidence 999999999987 9999999999999899999999999999999888888 6776654
No 68
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.9e-34 Score=277.22 Aligned_cols=204 Identities=36% Similarity=0.531 Sum_probs=178.8
Q ss_pred cccccCC--CCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCc
Q 039378 180 KSFTESK--LPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNP 255 (600)
Q Consensus 180 ~~~~~~~--l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~ 255 (600)
..|.+++ +++.++..+. ||..|+|+|.++++.++.++|++++||||||||++|++|++..+...+.. ...++
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~----~~~~~ 127 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM----PRNGT 127 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC----GGGCC
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc----ccCCc
Confidence 3456665 8999999887 99999999999999999999999999999999999999999988764321 12356
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHcc-CCCccceEEEEE
Q 039378 256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMN-VCHLSEVSFVVL 334 (600)
Q Consensus 256 ~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~lVi 334 (600)
++|||+||++||.|+++.+.+++...++.+..++|+.........+..+++|+|+||++|..++... ...+.++++|||
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 7999999999999999999999988889999999999988888888888999999999999988764 366889999999
Q ss_pred cccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeE
Q 039378 335 DEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVK 387 (600)
Q Consensus 335 DEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~ 387 (600)
||||++++++|...+..++..++..+|+++||||++..+..+.+.++..++..
T Consensus 208 DEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~~ 260 (262)
T 3ly5_A 208 DEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLY 260 (262)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCEE
T ss_pred cChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCee
Confidence 99999999999999999999999999999999999999999999998655544
No 69
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.5e-33 Score=270.02 Aligned_cols=206 Identities=34% Similarity=0.540 Sum_probs=175.1
Q ss_pred ccccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCC
Q 039378 177 KALKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVN 254 (600)
Q Consensus 177 ~~~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~ 254 (600)
....+|.++++++.++..+. ||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.... .+
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~--------~~ 82 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV--------KA 82 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC--------CS
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC--------CC
Confidence 45678999999999999987 899999999999999999999999999999999999999988764432 25
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEE
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVL 334 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVi 334 (600)
+++||++||++|+.|+++.+..++...++.+..++|+.........+.. ++|+|+||++|.+.+......+.++++||+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 6799999999999999999999988888999999998876666555544 899999999999999887778899999999
Q ss_pred cccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECC
Q 039378 335 DEADRMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGS 392 (600)
Q Consensus 335 DEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~ 392 (600)
||||++.++++...+..++..++...|+++||||++..+..+...++ .+|..+.+..
T Consensus 162 DEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~-~~p~~i~~~~ 218 (224)
T 1qde_A 162 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFM-RNPVRILVKK 218 (224)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHC-SSCEEEC---
T ss_pred cChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHC-CCCEEEEecC
Confidence 99999999999999999999999899999999999999999999998 6777776554
No 70
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=3.3e-33 Score=264.09 Aligned_cols=202 Identities=44% Similarity=0.680 Sum_probs=180.0
Q ss_pred ccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEE
Q 039378 181 SFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCL 258 (600)
Q Consensus 181 ~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~l 258 (600)
+|.++++++.++..+. ||..|+|+|.++++.+++++++++++|||+|||++|++|++..+..... ...++++|
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-----~~~~~~~l 76 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE-----RGRKPRAL 76 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-----TTCCCSEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-----cCCCCcEE
Confidence 5889999999999987 8999999999999999999999999999999999999999887754321 22367799
Q ss_pred EEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccc
Q 039378 259 VLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEAD 338 (600)
Q Consensus 259 iv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah 338 (600)
|++||++|+.|+++.+..+... +++..++|+.........+..+++|+|+||++|.+++......+.++++||+||||
T Consensus 77 il~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 77 VLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD 154 (207)
T ss_dssp EECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH
T ss_pred EEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh
Confidence 9999999999999999999765 67788899988877777777789999999999999998877788999999999999
Q ss_pred hhhcCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEE
Q 039378 339 RMLDMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVV 390 (600)
Q Consensus 339 ~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~ 390 (600)
++.++++...+..++..++..+|+++||||++..+..+...++ .+|..+.+
T Consensus 155 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~p~~i~~ 205 (207)
T 2gxq_A 155 EMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYM-KNPVLINV 205 (207)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHC-SSCEEEEC
T ss_pred HhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHc-CCCeEEEc
Confidence 9999999999999999999899999999999999999999998 67776654
No 71
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.7e-32 Score=261.88 Aligned_cols=202 Identities=29% Similarity=0.454 Sum_probs=175.7
Q ss_pred ccccccCCCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCce
Q 039378 179 LKSFTESKLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPL 256 (600)
Q Consensus 179 ~~~~~~~~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~ 256 (600)
...|.++++++.+++.+. ||..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+++
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--------~~~~~ 84 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--------TGQVS 84 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--------TTCCC
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--------CCCEE
Confidence 356999999999999987 89999999999999999999999999999999999999988775332 12457
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCC-CceEEEEeCCCChHHHHHHHhc-CCcEEEEchHHHHHHHHccCCCccceEEEEE
Q 039378 257 CLVLSPTRELADQIYDVLNDAGKPC-GVKSVCVYGGTSKQPQITALRS-GVDIVIGTPGRLIDLIEMNVCHLSEVSFVVL 334 (600)
Q Consensus 257 ~liv~Ptr~La~q~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVi 334 (600)
+||++||++|+.|+++.+.++.... ++++..++|+.........+.. .++|+|+||++|..++......+.++++||+
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 9999999999999999999998765 6888889998887766666654 4799999999999999887778899999999
Q ss_pred cccchhhc-CCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhcCCCCeEEE
Q 039378 335 DEADRMLD-MGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYMDPNPVKVV 389 (600)
Q Consensus 335 DEah~l~~-~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~ 389 (600)
||||++++ .++...+..++..++..+|+++||||++..+..+...++ .+|..+.
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~p~~i~ 219 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFM-QDPMEIF 219 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTC-SSCEEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHc-CCCeEEe
Confidence 99999987 467788888888888889999999999999999999888 6776653
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=6.4e-32 Score=306.04 Aligned_cols=315 Identities=15% Similarity=0.095 Sum_probs=212.2
Q ss_pred CCcHHHHHHhhhhhc--------------CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHH
Q 039378 200 NPSPIQSHAWPFLLN--------------GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRE 265 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~--------------~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~ 265 (600)
.|+|+|..|++.++. +++++++++||||||+++ ++++. ++... ...+++|||+|+++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~-ll~~~-------~~~~rvLvlvpr~e 341 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAAR-LATEL-------DFIDKVFFVVDRKD 341 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHH-HHTTC-------TTCCEEEEEECGGG
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHH-HHHhc-------CCCceEEEEeCcHH
Confidence 599999999999875 368999999999999996 66664 33321 11357999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHh-cCCcEEEEchHHHHHHHHccC--CCccceEEEEEcccchhhc
Q 039378 266 LADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALR-SGVDIVIGTPGRLIDLIEMNV--CHLSEVSFVVLDEADRMLD 342 (600)
Q Consensus 266 La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~--~~l~~~~~lViDEah~l~~ 342 (600)
|+.|+.+.+..++... +.++.+.......+. .+++|+|+||++|..++.... ..+..+.+||+||||++..
T Consensus 342 L~~Q~~~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~ 415 (1038)
T 2w00_A 342 LDYQTMKEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF 415 (1038)
T ss_dssp CCHHHHHHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH
T ss_pred HHHHHHHHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc
Confidence 9999999999887531 234445555555553 468999999999998876432 2356789999999999764
Q ss_pred CCChHHHHHHHHhcCcCCcEEEEeccCChhHH----HHHHHhcC----------------CCCeEEEECCccccc-----
Q 039378 343 MGFEEPVRFILSKISLARQMVMFSATWPIEVH----KLAEEYMD----------------PNPVKVVVGSEDLAA----- 397 (600)
Q Consensus 343 ~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~----~~~~~~~~----------------~~~~~i~~~~~~~~~----- 397 (600)
......++..++ ..++++||||+..... .....+++ ..|..+.........
T Consensus 416 ---~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~ 491 (1038)
T 2w00_A 416 ---GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLET 491 (1038)
T ss_dssp ---HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHT
T ss_pred ---hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccc
Confidence 234556666665 4689999999864321 01111111 112221111100000
Q ss_pred CCC------eeEEEEEecCcchHHHHHH-HHHHHhhc--------CCCeEEEEEeehhcHHHHHHHHHhCC---------
Q 039378 398 NHD------VMQIVEVLDDRSRDQRLLA-LLEKYHKS--------QRNRVLVFALYQLEADRLENMLRRSG--------- 453 (600)
Q Consensus 398 ~~~------~~~~~~~~~~~~~~~~l~~-~l~~~~~~--------~~~~~lVF~~s~~~~~~l~~~L~~~~--------- 453 (600)
... ..+ ........+...+.. ++..+... .+.++||||+|+..|..++..|...+
T Consensus 492 e~d~~~~~~i~~-~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~ 570 (1038)
T 2w00_A 492 ETDEKKLSAAEN-QQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSAT 570 (1038)
T ss_dssp CCCHHHHHHTCS-TTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred cccHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccc
Confidence 000 000 000001112223322 33333221 24589999999999999999997654
Q ss_pred ---CeEE-EEcCC----------C----------CH-----------------------------HHHHHHHHHHhcCCC
Q 039378 454 ---WKVV-AIHGK----------K----------AQ-----------------------------HERTKSLSLFKEGTC 480 (600)
Q Consensus 454 ---~~~~-~l~~~----------~----------~~-----------------------------~~r~~~~~~F~~g~~ 480 (600)
+.+. .+||. + ++ ..|..++++|++|.+
T Consensus 571 ~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i 650 (1038)
T 2w00_A 571 YKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDI 650 (1038)
T ss_dssp CCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSS
T ss_pred cccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCC
Confidence 4554 44542 2 22 148889999999999
Q ss_pred CEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCc----cEEEEEEcC
Q 039378 481 PLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKK----GVSHTFFTN 535 (600)
Q Consensus 481 ~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~----g~~~~~~~~ 535 (600)
+|||+|+++.+|+|+|.+ +|+++|.|.+...|+||+||++|.+.. |.++.|+..
T Consensus 651 ~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 651 DLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp SEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred eEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 999999999999999999 788999999999999999999998753 777776653
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=265.77 Aligned_cols=210 Identities=30% Similarity=0.495 Sum_probs=173.0
Q ss_pred hccccccccC----CCCHHHHHhhc--CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccC
Q 039378 176 YKALKSFTES----KLPDDVLGCCK--NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAV 249 (600)
Q Consensus 176 ~~~~~~~~~~----~l~~~l~~~~~--~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~ 249 (600)
+.++.+|.++ ++++.+++.+. ||..|+|+|.++++.+++|++++++||||+|||++|++|++..+....
T Consensus 21 p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~----- 95 (245)
T 3dkp_A 21 PDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA----- 95 (245)
T ss_dssp CCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC-----
T ss_pred CCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc-----
Confidence 4566777776 89999999887 999999999999999999999999999999999999999998875421
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHH-HHHhcCCcEEEEchHHHHHHHHcc--CCCc
Q 039378 250 GKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQI-TALRSGVDIVIGTPGRLIDLIEMN--VCHL 326 (600)
Q Consensus 250 ~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~l~~~~~Iiv~Tp~~l~~~l~~~--~~~l 326 (600)
..++++|||+||++|+.|+++.+.+++...++.+..++|+....... .....+++|+|+||++|..++... ...+
T Consensus 96 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 96 --NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp --SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred --cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 23567999999999999999999999888888777766654322221 122346899999999999998776 4678
Q ss_pred cceEEEEEcccchhhc---CCChHHHHHHHHhc-CcCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCc
Q 039378 327 SEVSFVVLDEADRMLD---MGFEEPVRFILSKI-SLARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSE 393 (600)
Q Consensus 327 ~~~~~lViDEah~l~~---~~~~~~~~~il~~~-~~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~ 393 (600)
.++++|||||||++.+ .+|...+..++..+ +...|+++||||+|..+..+...++ .+|..+.++..
T Consensus 174 ~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l-~~p~~i~~~~~ 243 (245)
T 3dkp_A 174 ASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNL-DNVISVSIGAR 243 (245)
T ss_dssp TTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHS-SSCEEEEECC-
T ss_pred ccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhC-CCCEEEEeCCC
Confidence 8999999999999998 45777777777665 4567999999999999999999999 68888887653
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=7.9e-29 Score=266.46 Aligned_cols=319 Identities=20% Similarity=0.232 Sum_probs=232.6
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
|| .|+++|..++|.+++|+ |+.+.||+|||++|++|++...+.. ..|+||+||++||.|.++.+..
T Consensus 77 G~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G-----------~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 77 GM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTG-----------KGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp CC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTC-----------SCCEEEESSHHHHHHHHHHHHH
T ss_pred CC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhC-----------CCEEEEeCCHHHHHHHHHHHHH
Confidence 88 99999999999999998 9999999999999999997665532 2379999999999999999999
Q ss_pred hcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHH-HHHHHccC------CCcc---ceEEEEEcccchhh-cCCC
Q 039378 277 AGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRL-IDLIEMNV------CHLS---EVSFVVLDEADRML-DMGF 345 (600)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~------~~l~---~~~~lViDEah~l~-~~~~ 345 (600)
++..+++++.+++||.+... +....+++|+|+||++| .+++..+. +.++ .+.++||||+|.|+ +.+.
T Consensus 143 l~~~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDear 220 (997)
T 2ipc_A 143 VYRGLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEAR 220 (997)
T ss_dssp HHHTTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTT
T ss_pred HHHhcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCC
Confidence 99999999999999987443 33445699999999999 88887653 4567 89999999999987 2211
Q ss_pred h---------------HHHHHHHHhcCc--------------C-------------------------------------
Q 039378 346 E---------------EPVRFILSKISL--------------A------------------------------------- 359 (600)
Q Consensus 346 ~---------------~~~~~il~~~~~--------------~------------------------------------- 359 (600)
. ..+..++..++. .
T Consensus 221 tPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l 300 (997)
T 2ipc_A 221 TPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMEL 300 (997)
T ss_dssp SCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHH
T ss_pred CCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHH
Confidence 0 112222222210 0
Q ss_pred ------------------------------------------------------------------------------Cc
Q 039378 360 ------------------------------------------------------------------------------RQ 361 (600)
Q Consensus 360 ------------------------------------------------------------------------------~q 361 (600)
..
T Consensus 301 ~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~k 380 (997)
T 2ipc_A 301 AHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEK 380 (997)
T ss_dssp HHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSE
T ss_pred HHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChH
Confidence 25
Q ss_pred EEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhc
Q 039378 362 MVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLE 441 (600)
Q Consensus 362 ~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~ 441 (600)
+.+||+|.......+...|- .. ++.+.......... ..-..+.....+...+..-+..... .+.+|||+|.|++.
T Consensus 381 LsGMTGTA~tE~~Ef~~iY~-l~--Vv~IPTn~p~~R~D-~~d~vy~t~~~K~~AIv~eI~~~~~-~GqPVLVgT~SIe~ 455 (997)
T 2ipc_A 381 RAGMTGTAKTEEKEFQEIYG-MD--VVVVPTNRPVIRKD-FPDVVYRTEKGKFYAVVEEIAEKYE-RGQPVLVGTISIEK 455 (997)
T ss_dssp EEEEESSCGGGHHHHHHHHC-CC--EEECCCSSCCCCEE-EEEEEESSHHHHHHHHHHHHHHHHH-HTCCEEEECSSHHH
T ss_pred heecCCCchHHHHHHHHHhC-CC--EEEcCCCCCccccc-CCCeEEcCHHHHHHHHHHHHHHHHH-CCCCEEEEeCCHHH
Confidence 78899998877666655543 22 23333322211111 1122233344556666555554443 36899999999999
Q ss_pred HHHHHHHHH-----------------------------------------------------------------------
Q 039378 442 ADRLENMLR----------------------------------------------------------------------- 450 (600)
Q Consensus 442 ~~~l~~~L~----------------------------------------------------------------------- 450 (600)
.+.|+.+|.
T Consensus 456 SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 535 (997)
T 2ipc_A 456 SERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVH 535 (997)
T ss_dssp HHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhh
Confidence 999999998
Q ss_pred -----hCCCeEEEEcCCCCHHHHHHHHHHHhcCC-CCEEEeccccccCCCCCCc-------------------C------
Q 039378 451 -----RSGWKVVAIHGKKAQHERTKSLSLFKEGT-CPLMVATDVAARGLDIPDV-------------------E------ 499 (600)
Q Consensus 451 -----~~~~~~~~l~~~~~~~~r~~~~~~F~~g~-~~vLvaT~~~~~Gldi~~v-------------------~------ 499 (600)
..|++.-+|.+..-..+- .++. ..|. -.|-|||++++||.||.=- .
T Consensus 536 ~~~~~~~gI~H~VLNAK~he~EA-eIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~ 612 (997)
T 2ipc_A 536 TLAVLRQGIPHQVLNAKHHAREA-EIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELF 612 (997)
T ss_dssp HHHHHHHCCCCCEECSSSHHHHH-HHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHH
T ss_pred hhHHHHcCCCeeeccccchHHHH-HHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccc
Confidence 456777777776443332 2222 2343 3499999999999999521 1
Q ss_pred -------------------------------------------------EEEEcCCCCChhhHHHHhhhccCCCCccEEE
Q 039378 500 -------------------------------------------------VVINYSFPLTTEDYVHRIGRTGRAGKKGVSH 530 (600)
Q Consensus 500 -------------------------------------------------~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~ 530 (600)
|||-...+.|..--.|-.||+||-|.+|.+.
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSr 692 (997)
T 2ipc_A 613 IKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSR 692 (997)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEE
T ss_pred cccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeE
Confidence 7898999999999999999999999999999
Q ss_pred EEEcCCcHh
Q 039378 531 TFFTNHNKA 539 (600)
Q Consensus 531 ~~~~~~d~~ 539 (600)
.|++-+|.-
T Consensus 693 F~LSLeDdL 701 (997)
T 2ipc_A 693 FYVSFDDDL 701 (997)
T ss_dssp EEEESSSHH
T ss_pred EEEECChHH
Confidence 999988754
No 75
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=3.5e-29 Score=231.79 Aligned_cols=179 Identities=39% Similarity=0.579 Sum_probs=145.8
Q ss_pred hcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEE
Q 039378 380 YMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAI 459 (600)
Q Consensus 380 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l 459 (600)
++ .+|..+.++... .....+.+.+..+....+...+..++.. .++++||||+++..++.++..|...++.+..+
T Consensus 11 ~~-~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~----~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 11 VD-LGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQK----TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTT----SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred cc-CCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHh----CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 44 567777766554 3445677888888877777777666643 25689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCC-cH
Q 039378 460 HGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNH-NK 538 (600)
Q Consensus 460 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~-d~ 538 (600)
||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 77
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHhhhh
Q 039378 539 ALAGELVNVLREARQVVPDALLKFGT 564 (600)
Q Consensus 539 ~~~~~i~~~l~~~~~~ip~~l~~~~~ 564 (600)
..+..|.+.+...++.+|++|.+++.
T Consensus 165 ~~~~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred HHHHHHHHHHHHccCcCCHHHHhhcC
Confidence 88999999999999999999987754
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.2e-27 Score=262.59 Aligned_cols=176 Identities=19% Similarity=0.198 Sum_probs=134.0
Q ss_pred CCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEee
Q 039378 359 ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALY 438 (600)
Q Consensus 359 ~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s 438 (600)
..|+++||||++...... . . ..+............ .............++..+..... .+.++||||++
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~-~--~~~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~-~~~~vlVf~~t 448 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----S-G--RVVEQIIRPTGLLDP---LVRVKPTENQILDLMEGIRERAA-RGERTLVTVLT 448 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----C-S--EEEEECSCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHH-TTCEEEEECSS
T ss_pred cCCEEEEecCCCHHHHHh----h-h--CeeeeeeccCCCCCC---eEEEecccchHHHHHHHHHHHHh-cCCEEEEEECC
Confidence 578999999988653211 1 1 111111111001111 11222333444555555544332 36799999999
Q ss_pred hhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCC-----CCChhhH
Q 039378 439 QLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSF-----PLTTEDY 513 (600)
Q Consensus 439 ~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~-----p~s~~~y 513 (600)
+..+..|+..|...|+.+..+||++++.+|..+++.|+.|.+.|||||+++++|+|+|++++||++|. |.+...|
T Consensus 449 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~ 528 (664)
T 1c4o_A 449 VRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 528 (664)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHH
T ss_pred HHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred HHHhhhccCCCCccEEEEEEcCCcHhHHHHHHH
Q 039378 514 VHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546 (600)
Q Consensus 514 ~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~ 546 (600)
+||+|||||.| .|.|++|++..+..+...|.+
T Consensus 529 iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 529 IQTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred HHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 99999999996 899999999988766555543
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=226.57 Aligned_cols=166 Identities=39% Similarity=0.661 Sum_probs=140.9
Q ss_pred cCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHh
Q 039378 397 ANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFK 476 (600)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~ 476 (600)
....+.+.+..+....+...+..++.... ...++||||+++..+..++..|...++.+..+||+|++.+|..+++.|+
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 34568888888888888888888887642 4678999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCc
Q 039378 477 EGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVP 556 (600)
Q Consensus 477 ~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip 556 (600)
+|.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+....+.+|
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 173 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 173 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCC
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhh
Q 039378 557 DALLKFGT 564 (600)
Q Consensus 557 ~~l~~~~~ 564 (600)
+++..++.
T Consensus 174 ~~l~~~a~ 181 (185)
T 2jgn_A 174 SWLENMAY 181 (185)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998865
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=1.1e-26 Score=254.78 Aligned_cols=177 Identities=20% Similarity=0.268 Sum_probs=134.4
Q ss_pred cCCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEe
Q 039378 358 LARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFAL 437 (600)
Q Consensus 358 ~~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~ 437 (600)
..+|+++||||++...... . ............. .... ............++..+..... .+.++||||+
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~-~~~~~~~~r~~~l--~~p~---i~v~~~~~~~~~Ll~~l~~~~~-~~~~vlVf~~ 453 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----T-DEMVEQIIRPTGL--LDPL---IDVRPIEGQIDDLIGEIQARIE-RNERVLVTTL 453 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----C-SSCEEECCCTTCC--CCCE---EEEECSTTHHHHHHHHHHHHHT-TTCEEEEECS
T ss_pred cCCCEEEEecCCChhHHHh----h-hCeeeeeecccCC--CCCe---EEEecccchHHHHHHHHHHHHh-cCCeEEEEEC
Confidence 3578999999987654221 1 1111111111111 1111 1222233344455454444332 3579999999
Q ss_pred ehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCcCEEEEcCC-----CCChhh
Q 039378 438 YQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSF-----PLTTED 512 (600)
Q Consensus 438 s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~-----p~s~~~ 512 (600)
++..++.|+..|...|+.+..+||++++.+|..+++.|+.|.+.|||||+++++|+|+|++++||++|. |.+...
T Consensus 454 t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~ 533 (661)
T 2d7d_A 454 TKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERS 533 (661)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHH
T ss_pred CHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 999999
Q ss_pred HHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHH
Q 039378 513 YVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVN 546 (600)
Q Consensus 513 y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~ 546 (600)
|+||+||+||. ..|.|++|+++.+..+...|.+
T Consensus 534 ~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~ 566 (661)
T 2d7d_A 534 LIQTIGRAARN-AEGRVIMYADKITKSMEIAINE 566 (661)
T ss_dssp HHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHH
T ss_pred HHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHH
Confidence 99999999998 6899999999988766554443
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=5.8e-27 Score=211.83 Aligned_cols=149 Identities=33% Similarity=0.553 Sum_probs=137.3
Q ss_pred CCCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhc
Q 039378 398 NHDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE 477 (600)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~ 477 (600)
...+.+++..+....+...+..++... ..+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cccceEEEEECChHHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 345778888888888888888887764 46799999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHH
Q 039378 478 GTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLR 549 (600)
Q Consensus 478 g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~ 549 (600)
|..+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.+...+..+.+.+.
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999999888888877653
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=3e-27 Score=214.20 Aligned_cols=157 Identities=29% Similarity=0.538 Sum_probs=134.5
Q ss_pred CeeEEEEEecCcc-hHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q 039378 400 DVMQIVEVLDDRS-RDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEG 478 (600)
Q Consensus 400 ~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g 478 (600)
.+.+++..+.... +...+..++... ..+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 3556666666666 788888777764 467999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHHhcCCCcHH
Q 039378 479 TCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDA 558 (600)
Q Consensus 479 ~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~ip~~ 558 (600)
..+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+...+..+...+....+.+|..
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999988888877776555555544
Q ss_pred H
Q 039378 559 L 559 (600)
Q Consensus 559 l 559 (600)
+
T Consensus 160 ~ 160 (165)
T 1fuk_A 160 I 160 (165)
T ss_dssp C
T ss_pred H
Confidence 3
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=4e-27 Score=214.59 Aligned_cols=157 Identities=28% Similarity=0.512 Sum_probs=137.7
Q ss_pred CCeeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q 039378 399 HDVMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEG 478 (600)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g 478 (600)
..+.+++..+....+...+..++... ..+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 35677888888888888888877754 467999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCC-cHhHHHHHHHHHHHhcCCCcH
Q 039378 479 TCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNH-NKALAGELVNVLREARQVVPD 557 (600)
Q Consensus 479 ~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~-d~~~~~~i~~~l~~~~~~ip~ 557 (600)
..+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+.+.+......+|.
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 9999999999999999999999999999999999999999999999999999999976 456667777766555555555
Q ss_pred H
Q 039378 558 A 558 (600)
Q Consensus 558 ~ 558 (600)
+
T Consensus 161 ~ 161 (172)
T 1t5i_A 161 E 161 (172)
T ss_dssp -
T ss_pred h
Confidence 4
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.3e-26 Score=210.56 Aligned_cols=148 Identities=25% Similarity=0.470 Sum_probs=127.6
Q ss_pred CCeeEEEEEecCcc-hHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhc
Q 039378 399 HDVMQIVEVLDDRS-RDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKE 477 (600)
Q Consensus 399 ~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~ 477 (600)
..+.+++..+.... +...+..++.. ...+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~---~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGS---ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTT---SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHh---CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 45777777776654 66666555543 346799999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEeccccccCCCCCCcCEEEEcCCC------CChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHH
Q 039378 478 GTCPLMVATDVAARGLDIPDVEVVINYSFP------LTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLR 549 (600)
Q Consensus 478 g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p------~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~ 549 (600)
|.++|||||+++++|+|+|++++||+||+| .++..|+||+||+||.|+.|.+++|+++.+...+..+.+.+.
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 160 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhc
Confidence 999999999999999999999999999999 899999999999999999999999999999777777766654
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=5.2e-26 Score=214.58 Aligned_cols=146 Identities=35% Similarity=0.520 Sum_probs=131.0
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCC
Q 039378 402 MQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCP 481 (600)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~ 481 (600)
.+....+....+...+..++... .++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHH---CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred eeeEEeCCHHHHHHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 34445566677888888777653 467999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHH
Q 039378 482 LMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLRE 550 (600)
Q Consensus 482 vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~ 550 (600)
|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+..
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999998888888777654
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=2.8e-25 Score=219.30 Aligned_cols=147 Identities=34% Similarity=0.511 Sum_probs=130.1
Q ss_pred eeEEEEEecCcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q 039378 401 VMQIVEVLDDRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTC 480 (600)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~ 480 (600)
+.+++..+....+...+..++.... ++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|+.|.+
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~---~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS---PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC---CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC---CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 4567777777888888888887653 6899999999999999999999999999999999999999999999999999
Q ss_pred CEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHHH
Q 039378 481 PLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLRE 550 (600)
Q Consensus 481 ~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~ 550 (600)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+...+..+...+..
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999998887777666543
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.85 E-value=3.4e-26 Score=208.28 Aligned_cols=145 Identities=35% Similarity=0.587 Sum_probs=127.9
Q ss_pred eEEEEEecC-cchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q 039378 402 MQIVEVLDD-RSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTC 480 (600)
Q Consensus 402 ~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~ 480 (600)
.+.+..+.. ..+...+..++.. ...+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|..
T Consensus 5 ~~~~~~~~~~~~k~~~l~~ll~~---~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 5 HQWYYRADDLEHKTALLVHLLKQ---PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 344444444 5566666666654 235789999999999999999999999999999999999999999999999999
Q ss_pred CEEEeccccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEEEEEEcCCcHhHHHHHHHHHH
Q 039378 481 PLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLR 549 (600)
Q Consensus 481 ~vLvaT~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~ 549 (600)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|++..+...+..+...+.
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE 150 (170)
Confidence 999999999999999999999999999999999999999999999999999999998888777776654
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=6.1e-23 Score=220.93 Aligned_cols=275 Identities=22% Similarity=0.250 Sum_probs=155.7
Q ss_pred CCCCCcHHHHHHhh----hhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWP----FLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYD 272 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~----~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~ 272 (600)
|| .|+|+|.+++. .+..++++++.||||+|||++|++|++.. +++++|++||++|+.|+.+
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------~~~~~~~~~t~~l~~q~~~ 69 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------KKKVLIFTRTHSQLDSIYK 69 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------TCEEEEEESCHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------CCcEEEEcCCHHHHHHHHH
Confidence 66 89999999865 45688999999999999999999998653 3458999999999999999
Q ss_pred HHHHhcCCCCceEEEEeCCCCh--------H------------------------HHH---------------HHHhcCC
Q 039378 273 VLNDAGKPCGVKSVCVYGGTSK--------Q------------------------PQI---------------TALRSGV 305 (600)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~--------~------------------------~~~---------------~~l~~~~ 305 (600)
.+..+. ++++.+.|.... . ..+ +....++
T Consensus 70 ~~~~l~----~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~a 145 (540)
T 2vl7_A 70 NAKLLG----LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDK 145 (540)
T ss_dssp HHGGGT----CCEEEC---------------------------------------------------------CTTGGGC
T ss_pred HHHhcC----CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcC
Confidence 888752 444443332110 0 000 1112347
Q ss_pred cEEEEchHHHHHHHHccCC-------CccceEEEEEcccchhhcCC--C-----hH------------------------
Q 039378 306 DIVIGTPGRLIDLIEMNVC-------HLSEVSFVVLDEADRMLDMG--F-----EE------------------------ 347 (600)
Q Consensus 306 ~Iiv~Tp~~l~~~l~~~~~-------~l~~~~~lViDEah~l~~~~--~-----~~------------------------ 347 (600)
+|||+||..|.+......+ .+....+|||||||.|.+.. + ..
T Consensus 146 diVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~ 225 (540)
T 2vl7_A 146 DVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVK 225 (540)
T ss_dssp SEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 9999999999875433221 24678999999999983210 0 00
Q ss_pred ----------------------------------HHHHHHHh-----------------------------------c-C
Q 039378 348 ----------------------------------PVRFILSK-----------------------------------I-S 357 (600)
Q Consensus 348 ----------------------------------~~~~il~~-----------------------------------~-~ 357 (600)
.+..++.. + |
T Consensus 226 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P 305 (540)
T 2vl7_A 226 DYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVP 305 (540)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEEC
T ss_pred HHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEeh
Confidence 00000000 0 0
Q ss_pred c------------CCcEEEEeccCChhHHHHHHHhcCCCCeEEEECCcccccCCCeeEEEEE--ecCc--ch---HHHHH
Q 039378 358 L------------ARQMVMFSATWPIEVHKLAEEYMDPNPVKVVVGSEDLAANHDVMQIVEV--LDDR--SR---DQRLL 418 (600)
Q Consensus 358 ~------------~~q~i~~SATl~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~--~~---~~~l~ 418 (600)
. ...+|++||||++... +...| ...... .. ........ .+.. .+ ...+.
T Consensus 306 ~~~~~~l~~~~~~~~~~IltSATL~p~~~-~~~~f------~~~~~~-~~----g~~~~~~~~~l~s~f~~r~~~~~~~~ 373 (540)
T 2vl7_A 306 SDVNQLIEDALNVKTFKVLMSGTLPESLT-LTNSY------KIVVNE-SY----GRGEYYYCPNVTSELRKRNSNIPIYS 373 (540)
T ss_dssp SCHHHHHHHHTCCSSCEEEEESSCCTTCC-CTTEE------EEECCC-C-----CCCEEEECTTCCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcCccCCeEEEcccCCCCcc-cchhc------CCchhh-ee----cCCcceeccccCCCcccccCHHHHHH
Confidence 0 0113777888776200 00001 000000 00 00001100 1111 11 13455
Q ss_pred HHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEE--eccccccCCCCC
Q 039378 419 ALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMV--ATDVAARGLDIP 496 (600)
Q Consensus 419 ~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLv--aT~~~~~Gldi~ 496 (600)
..+..+....++++|||++|...++.++..|.. +. ..+++.. ..|..+++.|+.+. .||+ ||+.+++|||+|
T Consensus 374 ~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~ 447 (540)
T 2vl7_A 374 ILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFR 447 (540)
T ss_dssp HHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-----------
T ss_pred HHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecC
Confidence 555555555678999999999999999988865 33 4556654 46889999999865 5776 889999999999
Q ss_pred C----cCEEEEcCCCC
Q 039378 497 D----VEVVINYSFPL 508 (600)
Q Consensus 497 ~----v~~VI~~d~p~ 508 (600)
+ +++||++++|.
T Consensus 448 ~~~~~~~~Vii~~lPf 463 (540)
T 2vl7_A 448 EKENLFESLVLAGLPY 463 (540)
T ss_dssp ----CEEEEEEESCCC
T ss_pred CCcccccEEEEECCCC
Confidence 8 89999999884
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=5.4e-24 Score=202.07 Aligned_cols=166 Identities=20% Similarity=0.155 Sum_probs=119.9
Q ss_pred CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHH-HHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQ-IYDVLN 275 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q-~~~~~~ 275 (600)
....|+|+|.++++.++.++++++++|||+|||++|+++++..+..... ...++++||++|+++|+.| +.+.+.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-----~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK-----ASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH-----TTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc-----ccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 4458999999999999999999999999999999999998877655431 1124568999999999999 788888
Q ss_pred HhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccC------CCccceEEEEEcccchhhcCCChHHH
Q 039378 276 DAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNV------CHLSEVSFVVLDEADRMLDMGFEEPV 349 (600)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~------~~l~~~~~lViDEah~l~~~~~~~~~ 349 (600)
.+... ++.+..+.|+.........+..+++|+|+||++|...+.... ..+.++++|||||||++...++...+
T Consensus 105 ~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~ 183 (216)
T 3b6e_A 105 PFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 183 (216)
T ss_dssp HHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHH
T ss_pred HHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHH
Confidence 87654 577777887766554444444568999999999999887643 56789999999999999876554444
Q ss_pred H-HHHHhc-------------CcCCcEEEEecc
Q 039378 350 R-FILSKI-------------SLARQMVMFSAT 368 (600)
Q Consensus 350 ~-~il~~~-------------~~~~q~i~~SAT 368 (600)
. .++... ....++++||||
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 184 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 2 222211 145789999998
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.89 E-value=4e-21 Score=207.60 Aligned_cols=312 Identities=15% Similarity=0.069 Sum_probs=199.4
Q ss_pred CCcHHHHHHhhh----hhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHH
Q 039378 200 NPSPIQSHAWPF----LLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN 275 (600)
Q Consensus 200 ~~~~~Q~~~i~~----il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~ 275 (600)
.|+|.|.+++.. +..++++++.||||+|||++|++|++.. +++++|++||++|+.|+.+.+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------------~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------------KPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------------CSEEEEEESSGGGHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------------CCeEEEEcCCHHHHHHHHHHHH
Confidence 689999987764 5578999999999999999999999871 4568999999999999999999
Q ss_pred HhcCCCCceEEEEeCCCCh---------------------------------HHHH------------------HHHhcC
Q 039378 276 DAGKPCGVKSVCVYGGTSK---------------------------------QPQI------------------TALRSG 304 (600)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~---------------------------------~~~~------------------~~l~~~ 304 (600)
.+....+++++.+.|+.+. .... +....+
T Consensus 69 ~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ 148 (551)
T 3crv_A 69 KIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYK 148 (551)
T ss_dssp TCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGG
T ss_pred HHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhc
Confidence 9877777888877763221 1111 222346
Q ss_pred CcEEEEchHHHHHHHHccCCCc-cceEEEEEcccchhhcCCC--------------------------------------
Q 039378 305 VDIVIGTPGRLIDLIEMNVCHL-SEVSFVVLDEADRMLDMGF-------------------------------------- 345 (600)
Q Consensus 305 ~~Iiv~Tp~~l~~~l~~~~~~l-~~~~~lViDEah~l~~~~~-------------------------------------- 345 (600)
++|||+||..|.+...+..+.+ ....+|||||||.|.+ ..
T Consensus 149 adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~ 227 (551)
T 3crv_A 149 ADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREV 227 (551)
T ss_dssp CSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTS
T ss_pred CCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999988754433332 4678999999998765 10
Q ss_pred -----------------hHHHHHH----------------------------H---------------------------
Q 039378 346 -----------------EEPVRFI----------------------------L--------------------------- 353 (600)
Q Consensus 346 -----------------~~~~~~i----------------------------l--------------------------- 353 (600)
...+..+ +
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~ 307 (551)
T 3crv_A 228 VLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYY 307 (551)
T ss_dssp CCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHH
T ss_pred hhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHH
Confidence 0000000 0
Q ss_pred -HhcCcC-CcEEEEeccCChhHHHHHHHhcCCC-CeEEEEC--CcccccCCCeeEEEEEe--cC------cchHHHHHHH
Q 039378 354 -SKISLA-RQMVMFSATWPIEVHKLAEEYMDPN-PVKVVVG--SEDLAANHDVMQIVEVL--DD------RSRDQRLLAL 420 (600)
Q Consensus 354 -~~~~~~-~q~i~~SATl~~~~~~~~~~~~~~~-~~~i~~~--~~~~~~~~~~~~~~~~~--~~------~~~~~~l~~~ 420 (600)
..+... +.+|++||||.+ . ......++.. +....+. ...... ......+... +. ......+...
T Consensus 308 l~~~~~~~~svIltSaTL~~-~-~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~ 384 (551)
T 3crv_A 308 LNLLNDNELSIILMSGTLPP-R-EYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADY 384 (551)
T ss_dssp HGGGGCTTCEEEEEESSCCC-H-HHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHH
T ss_pred HHHHhccCceEEEEeeCCCc-H-HHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHH
Confidence 001122 578999999987 3 3333344333 2221000 000011 1111122111 11 1113445555
Q ss_pred HHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEec--cccccCCCCC--
Q 039378 421 LEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT--DVAARGLDIP-- 496 (600)
Q Consensus 421 l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT--~~~~~Gldi~-- 496 (600)
+..+....++++|||++|...+..++.. .+..+..-..+++ +...++.|+.+...||+|| ..++.|||+|
T Consensus 385 i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~ 458 (551)
T 3crv_A 385 LLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNN 458 (551)
T ss_dssp HHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEET
T ss_pred HHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceeccccccccc
Confidence 5555556678999999999999998873 3444444333444 4557778854444799998 6999999999
Q ss_pred ---CcCEEEEcCCCCC---h----------------hh-----------HHHHhhhccCCCCccEEEEEEcC
Q 039378 497 ---DVEVVINYSFPLT---T----------------ED-----------YVHRIGRTGRAGKKGVSHTFFTN 535 (600)
Q Consensus 497 ---~v~~VI~~d~p~s---~----------------~~-----------y~qr~GR~gR~g~~g~~~~~~~~ 535 (600)
.++.||...+|.- + .. ..|.+||+-|....--++++++.
T Consensus 459 ~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 459 DRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp TEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred CCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 3788998877641 1 11 13888999887655445555544
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=3.6e-22 Score=197.55 Aligned_cols=156 Identities=19% Similarity=0.126 Sum_probs=125.5
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+|+|.++++.++.+++.++++|||+|||+++++++...+... ..++|||+||++|+.||.+.+.+++.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------~~~~lil~Pt~~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC----------SSEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC----------CCeEEEEECCHHHHHHHHHHHHHhcc
Confidence 79999999999999888899999999999999888766654432 22589999999999999999999987
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcC
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA 359 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~ 359 (600)
..+..+..+++|..... ....+++|+|+||+.+... ....+.++++||+||||++.+ ..+..++..+...
T Consensus 183 ~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~ 252 (282)
T 1rif_A 183 FSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNC 252 (282)
T ss_dssp CCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTC
T ss_pred cccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcC
Confidence 66677788888765432 2224589999999987543 223467899999999999864 4677888888778
Q ss_pred CcEEEEeccCChhHHH
Q 039378 360 RQMVMFSATWPIEVHK 375 (600)
Q Consensus 360 ~q~i~~SATl~~~~~~ 375 (600)
.++++||||++.....
T Consensus 253 ~~~l~lSATp~~~~~~ 268 (282)
T 1rif_A 253 MFKFGLSGSLRDGKAN 268 (282)
T ss_dssp CEEEEECSSCCTTSTT
T ss_pred CeEEEEeCCCCCcchH
Confidence 9999999999865433
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=187.22 Aligned_cols=169 Identities=20% Similarity=0.166 Sum_probs=124.9
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.++++|.++++.+..|++++++||||||||+++.++++........ ..+.++++++|+++|+.|+.+.+.....
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~------~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR------AAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC------GGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC------CCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999988888877665432 1245689999999999999998876543
Q ss_pred -CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchh-hcCCCh-HHHHHHHHhc
Q 039378 280 -PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRM-LDMGFE-EPVRFILSKI 356 (600)
Q Consensus 280 -~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l-~~~~~~-~~~~~il~~~ 356 (600)
..+..+......... ....+++|+|+||++|.+++.. .+.++++|||||||++ ++.++. ..+..++...
T Consensus 135 ~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~ 206 (235)
T 3llm_A 135 EEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY 206 (235)
T ss_dssp CCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred cccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC
Confidence 233333322221110 0113478999999999998875 4889999999999986 665555 3555555554
Q ss_pred CcCCcEEEEeccCChhHHHHHHHhcCCCCe
Q 039378 357 SLARQMVMFSATWPIEVHKLAEEYMDPNPV 386 (600)
Q Consensus 357 ~~~~q~i~~SATl~~~~~~~~~~~~~~~~~ 386 (600)
...|+++||||++... ...++...|+
T Consensus 207 -~~~~~il~SAT~~~~~---~~~~~~~~pv 232 (235)
T 3llm_A 207 -PEVRIVLMSATIDTSM---FCEYFFNCPI 232 (235)
T ss_dssp -TTSEEEEEECSSCCHH---HHHHTTSCCC
T ss_pred -CCCeEEEEecCCCHHH---HHHHcCCCCE
Confidence 4689999999999765 4455545443
No 91
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.83 E-value=2.8e-20 Score=181.44 Aligned_cols=126 Identities=13% Similarity=0.265 Sum_probs=98.9
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHHHhcC-CCC-EEEec
Q 039378 410 DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS-GWKVVAIHGKKAQHERTKSLSLFKEG-TCP-LMVAT 486 (600)
Q Consensus 410 ~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~F~~g-~~~-vLvaT 486 (600)
...|...+..++..+.. .+.++||||++...++.|...|... |+.+..+||++++.+|..+++.|++| .+. +|++|
T Consensus 94 ~s~K~~~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TCHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred cCHHHHHHHHHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 45677888888877644 3679999999999999999999885 99999999999999999999999998 676 78999
Q ss_pred cccccCCCCCCcCEEEEcCCCCChhhHHHHhhhccCCCCccEE--EEEEcCC
Q 039378 487 DVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVS--HTFFTNH 536 (600)
Q Consensus 487 ~~~~~Gldi~~v~~VI~~d~p~s~~~y~qr~GR~gR~g~~g~~--~~~~~~~ 536 (600)
+++++|||++++++||+||+|||+..|.||+||++|.|+.+.+ +.|++..
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999998765 5556655
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.81 E-value=4.9e-19 Score=192.60 Aligned_cols=317 Identities=17% Similarity=0.130 Sum_probs=189.6
Q ss_pred CCcHHHHHHhh----hhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHH
Q 039378 200 NPSPIQSHAWP----FLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLN 275 (600)
Q Consensus 200 ~~~~~Q~~~i~----~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~ 275 (600)
+|+|.|.+.+. .+.+|+++++.||||+|||++|++|++.++... +++++|++||++|+.|+.+.+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----------~~kvli~t~T~~l~~Qi~~el~ 72 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----------KLKVLYLVRTNSQEEQVIKELR 72 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----------TCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----------CCeEEEECCCHHHHHHHHHHHH
Confidence 58899998875 456889999999999999999999999887643 3468999999999999999998
Q ss_pred HhcCCCCceEEEEeCCCChHH------------------HHH--------------------------------------
Q 039378 276 DAGKPCGVKSVCVYGGTSKQP------------------QIT-------------------------------------- 299 (600)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~~~------------------~~~-------------------------------------- 299 (600)
.+....+++++.+.|+.+... ...
T Consensus 73 ~l~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die 152 (620)
T 4a15_A 73 SLSSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAE 152 (620)
T ss_dssp HHHHHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHH
T ss_pred HHhhccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHH
Confidence 876544566666555322000 000
Q ss_pred ------------------HHhcCCcEEEEchHHHHHHHHccC----C-CccceEEEEEcccchhhcC-------------
Q 039378 300 ------------------ALRSGVDIVIGTPGRLIDLIEMNV----C-HLSEVSFVVLDEADRMLDM------------- 343 (600)
Q Consensus 300 ------------------~l~~~~~Iiv~Tp~~l~~~l~~~~----~-~l~~~~~lViDEah~l~~~------------- 343 (600)
.....+||||+++..|++..-+.. . ....-.+|||||||.|.+.
T Consensus 153 ~l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~ 232 (620)
T 4a15_A 153 EFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVES 232 (620)
T ss_dssp HHHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHH
T ss_pred HHHHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHH
Confidence 011238999999988765432211 1 1234579999999986320
Q ss_pred -------------CC------h-HH-------HH-----------------------------------HH-------HH
Q 039378 344 -------------GF------E-EP-------VR-----------------------------------FI-------LS 354 (600)
Q Consensus 344 -------------~~------~-~~-------~~-----------------------------------~i-------l~ 354 (600)
.+ . .. +. .+ ..
T Consensus 233 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~ 312 (620)
T 4a15_A 233 LNRADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGE 312 (620)
T ss_dssp HHHHHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 00 0 00 00 00 00
Q ss_pred -------------------------h---cC------------------------------cCCcEEEEeccCChhHHHH
Q 039378 355 -------------------------K---IS------------------------------LARQMVMFSATWPIEVHKL 376 (600)
Q Consensus 355 -------------------------~---~~------------------------------~~~q~i~~SATl~~~~~~~ 376 (600)
. .. ....+|++||||.+ ...+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~ 391 (620)
T 4a15_A 313 YVENEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFY 391 (620)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHH
T ss_pred HHHhhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHH
Confidence 0 00 01245899999986 3333
Q ss_pred HHHhcCCCCeEEEECCcccccCCCeeEEEEEe--c------CcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHH
Q 039378 377 AEEYMDPNPVKVVVGSEDLAANHDVMQIVEVL--D------DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENM 448 (600)
Q Consensus 377 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~ 448 (600)
... ++.....+.+... .. ..... .+... + .......+...+..+....++++|||++|...+..++..
T Consensus 392 ~~~-lGl~~~~~~~~sp-f~-~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~ 467 (620)
T 4a15_A 392 SDI-TGFEIPFKKIGEI-FP-PENRY-IAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENR 467 (620)
T ss_dssp HHH-HCCCCCEEECCCC-SC-GGGEE-EEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSS
T ss_pred HHH-hCCCceeeecCCC-CC-HHHeE-EEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHH
Confidence 333 3232333333221 11 11111 11111 1 011123344444444444578899999999999999988
Q ss_pred HHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc--ccccCCCCCC--cCEEEEcCCCCCh--------------
Q 039378 449 LRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD--VAARGLDIPD--VEVVINYSFPLTT-------------- 510 (600)
Q Consensus 449 L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~--~~~~Gldi~~--v~~VI~~d~p~s~-------------- 510 (600)
|.. +..- ..-+++..+|..+++.|+ +.-.||+++. .++.|||+|+ .+.||...+|.-.
T Consensus 468 l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~ 543 (620)
T 4a15_A 468 VSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYER 543 (620)
T ss_dssp CCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHH
T ss_pred HHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 872 2222 444555678999999999 8888999974 8999999986 6789998887421
Q ss_pred -----h--hH--------HHHhhhccCCCCccEEEEEEcC
Q 039378 511 -----E--DY--------VHRIGRTGRAGKKGVSHTFFTN 535 (600)
Q Consensus 511 -----~--~y--------~qr~GR~gR~g~~g~~~~~~~~ 535 (600)
- .| .|.+||+-|.-..--++++++.
T Consensus 544 ~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 544 KYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp HHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred hhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 1 12 4899999997655445555543
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.78 E-value=6e-19 Score=169.10 Aligned_cols=139 Identities=19% Similarity=0.082 Sum_probs=108.0
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 199 KNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
..|+++|.+++..++.++++++++|||+|||++++.++... +.++||++|+++|+.||.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------------~~~~liv~P~~~L~~q~~~~~~~~- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGIF- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------------CSCEEEEESSHHHHHHHHHHHGGG-
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEeCCHHHHHHHHHHHHhC-
Confidence 47999999999999999999999999999999977765432 234799999999999999999884
Q ss_pred CCCCce-EEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcC
Q 039378 279 KPCGVK-SVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357 (600)
Q Consensus 279 ~~~~~~-~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~ 357 (600)
++. +..+.|+... ..+|+|+||+.+...... ....+++|||||||++.+..+ ..++..++
T Consensus 157 ---~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~----~~i~~~~~ 217 (237)
T 2fz4_A 157 ---GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY----VQIAQMSI 217 (237)
T ss_dssp ---CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH----HHHHHTCC
T ss_pred ---CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH----HHHHHhcc
Confidence 466 5666655432 379999999998775542 124689999999999977543 34555554
Q ss_pred cCCcEEEEeccCChh
Q 039378 358 LARQMVMFSATWPIE 372 (600)
Q Consensus 358 ~~~q~i~~SATl~~~ 372 (600)
..++++||||++..
T Consensus 218 -~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 218 -APFRLGLTATFERE 231 (237)
T ss_dssp -CSEEEEEEESCC--
T ss_pred -CCEEEEEecCCCCC
Confidence 57899999998754
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.80 E-value=4.4e-09 Score=114.26 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=88.0
Q ss_pred cHHHHHHhhhhhcCCcEEEEecCCCCchh--HhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 202 SPIQSHAWPFLLNGRDFIGIAKTGSGKTI--AFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 202 ~~~Q~~~i~~il~~~d~i~~a~TGsGKT~--~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
+++|+.+++.++.++.+++.|++|+|||. +++++++..+.. ..+.++++++||..+|.++.+.+.....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---------~~~~~vll~APTg~AA~~L~e~~~~~~~ 221 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---------GERCRIRLAAPTGKAAARLTESLGKALR 221 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---------SCCCCEEEEBSSHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---------cCCCeEEEEeCChhHHHHHHHHHHHHHh
Confidence 78999999999999999999999999994 455555543211 1245689999999999999888776433
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcC
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLA 359 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~ 359 (600)
..++..... .+... ....+ ..++-.+|+.. . +.........+++||||||+ |++ ...+..++..++..
T Consensus 222 ~l~l~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~ 289 (608)
T 1w36_D 222 QLPLTDEQK-KRIPE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDH 289 (608)
T ss_dssp HSSCCSCCC-CSCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTT
T ss_pred cCCCCHHHH-hccch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCC
Confidence 222211000 00000 00000 11222233221 1 11111223378999999999 444 35677888888888
Q ss_pred CcEEEEecc
Q 039378 360 RQMVMFSAT 368 (600)
Q Consensus 360 ~q~i~~SAT 368 (600)
.|+|++.-.
T Consensus 290 ~~liLvGD~ 298 (608)
T 1w36_D 290 ARVIFLGDR 298 (608)
T ss_dssp CEEEEEECT
T ss_pred CEEEEEcch
Confidence 899888744
No 95
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.50 E-value=1e-06 Score=85.74 Aligned_cols=124 Identities=9% Similarity=0.089 Sum_probs=91.6
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecccc
Q 039378 410 DRSRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVA 489 (600)
Q Consensus 410 ~~~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~ 489 (600)
...|...+.+++..+.. .++++|||+++.++.+.+..+|...++.+..+.|.....+ ++. .++.+.+.+.|..+
T Consensus 107 ~SGKf~~L~~LL~~l~~-~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag 180 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQE-YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEG 180 (328)
T ss_dssp TCHHHHHHHHHHHHHTT-SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred cCccHHHHHHHHHHHHh-CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECCC
Confidence 45677777778877754 5789999999999999999999999999999999865432 221 23444555557666
Q ss_pred ccCCC-----CCCcCEEEEcCCCCChhhH-HHHhhhccCCC----CccEEEEEEcCCcHh
Q 039378 490 ARGLD-----IPDVEVVINYSFPLTTEDY-VHRIGRTGRAG----KKGVSHTFFTNHNKA 539 (600)
Q Consensus 490 ~~Gld-----i~~v~~VI~~d~p~s~~~y-~qr~GR~gR~g----~~g~~~~~~~~~d~~ 539 (600)
+-|+| +..++.||.||..||+..- +|++-|++|.| +.-.++.|++.+..+
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 66775 6889999999999999986 99999999984 245778888877644
No 96
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.30 E-value=4.3e-05 Score=84.07 Aligned_cols=71 Identities=17% Similarity=0.116 Sum_probs=53.2
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 199 KNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
..+++-|.+++.. ....++|.|+.|||||.+ ++.-+.+++.... ....++|++++|+..+.++.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~-l~~ri~~l~~~~~------~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRV-LVHRIAWLMSVEN------CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHH-HHHHHHHHHHTSC------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHH-HHHHHHHHHHhCC------CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4678999999983 356799999999999987 4444555554321 012358999999999999999998864
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.25 E-value=1.4e-06 Score=95.66 Aligned_cols=68 Identities=21% Similarity=0.227 Sum_probs=54.7
Q ss_pred CCcHHHHHHhhhhhcCCc-EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 200 NPSPIQSHAWPFLLNGRD-FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d-~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
.+.+-|.+|+..++..++ .||.||+|+|||.+ ++.++.++... +.++|+++||...+.++.+.+....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t-i~~~I~~l~~~----------~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT-VVEIILQAVKQ----------GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH-HHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH-HHHHHHHHHhC----------CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 578999999999987775 68889999999987 44455555553 3458999999999999999887654
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.20 E-value=1.4e-05 Score=87.25 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=55.5
Q ss_pred CCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 198 ~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
+..+++.|..++..++.+.-+++.||+|+|||.+ +..++.++.... +.++|+++||...+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~-~~~~i~~l~~~~---------~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQG---------NGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH-HHHHHHHHHTSS---------SCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH-HHHHHHHHHHcC---------CCeEEEEeCcHHHHHHHHHHHHhc
Confidence 3467899999999988877789999999999986 344455554321 335899999999999999988765
No 99
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.17 E-value=5.4e-06 Score=89.05 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=79.4
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.+++.|..++..++.++.+++.|+.|+|||.. +..++..+... +.++++++||...+..+.+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~----------g~~Vl~~ApT~~Aa~~L~e~~~---- 253 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESL----------GLEVGLCAPTGKAARRLGEVTG---- 253 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHHT----
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhc----------CCeEEEecCcHHHHHHhHhhhc----
Confidence 57899999999999988999999999999985 33333333322 3447999999998887766432
Q ss_pred CCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHH----HHccCCCccceEEEEEcccchhhcCCChHHHHHHHHh
Q 039378 280 PCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDL----IEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSK 355 (600)
Q Consensus 280 ~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~----l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~ 355 (600)
.. ..|..+++.. +.........+++|||||++.+. ...+..++..
T Consensus 254 ---~~------------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~ 302 (574)
T 3e1s_A 254 ---RT------------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAA 302 (574)
T ss_dssp ---SC------------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTT
T ss_pred ---cc------------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHh
Confidence 10 1111111100 01111234467899999999763 3566677777
Q ss_pred cCcCCcEEEEec
Q 039378 356 ISLARQMVMFSA 367 (600)
Q Consensus 356 ~~~~~q~i~~SA 367 (600)
++...+++++.-
T Consensus 303 ~~~~~~lilvGD 314 (574)
T 3e1s_A 303 VPPGARVLLVGD 314 (574)
T ss_dssp SCTTCEEEEEEC
T ss_pred CcCCCEEEEEec
Confidence 776666666543
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=1.9e-05 Score=88.12 Aligned_cols=71 Identities=24% Similarity=0.297 Sum_probs=56.0
Q ss_pred CCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 198 FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 198 ~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
+..+++.|.+|+..++.+.-++|.||+|+|||.+ +..++.++.... +.++|+++||...+.++.+.+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~-i~~~i~~l~~~~---------~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVT-SATIVYHLSKIH---------KDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHH-HHHHHHHHHHHH---------CCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHH-HHHHHHHHHhCC---------CCeEEEEcCcHHHHHHHHHHHHhh
Confidence 3467899999999998877789999999999986 344455554421 234899999999999999998875
Q ss_pred c
Q 039378 278 G 278 (600)
Q Consensus 278 ~ 278 (600)
+
T Consensus 428 g 428 (802)
T 2xzl_A 428 G 428 (802)
T ss_dssp T
T ss_pred C
Confidence 3
No 101
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.13 E-value=8.3e-06 Score=85.62 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=50.3
Q ss_pred CCCCCcHHHHHHhhhhhcC----C-cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHH
Q 039378 197 NFKNPSPIQSHAWPFLLNG----R-DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIY 271 (600)
Q Consensus 197 ~~~~~~~~Q~~~i~~il~~----~-d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~ 271 (600)
.|..+++-|++++..++.. . .+++.|+.|+|||.+ +..++..+..... ..+++++||...+..+.
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~~---------~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTGE---------TGIILAAPTHAAKKILS 91 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTTC---------CCEEEEESSHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcCC---------ceEEEecCcHHHHHHHH
Confidence 6788999999999876543 3 799999999999975 3444555544321 23799999988887776
Q ss_pred HHH
Q 039378 272 DVL 274 (600)
Q Consensus 272 ~~~ 274 (600)
+.+
T Consensus 92 ~~~ 94 (459)
T 3upu_A 92 KLS 94 (459)
T ss_dssp HHH
T ss_pred hhh
Confidence 654
No 102
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.07 E-value=2.8e-05 Score=86.66 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=55.3
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 199 KNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
..+++.|..++..++.+.-.++.||+|+|||.+ +..++..+.... +.++|+++||...+.++.+.+...+
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~~~---------~~~ilv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQG---------NGPVLVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHTTC---------SSCEEEEESSHHHHHHHHHHHHTTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHHcC---------CCcEEEEcCcHHHHHHHHHHHHHhC
Confidence 457899999999998877789999999999986 344555555421 3348999999999999999887653
No 103
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.49 E-value=0.01 Score=65.78 Aligned_cols=71 Identities=15% Similarity=0.092 Sum_probs=52.8
Q ss_pred CCCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 199 KNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 199 ~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
..++|-|++++.. ....++|.|..|||||.+ ++.-+.+++.... .....+|+|+.|+..|.++.+++..+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~v-L~~ri~~ll~~~~------~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRV-LTHRIAYLMAEKH------VAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHH-HHHHHHHHHHTTC------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHH-HHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4578999999976 356899999999999997 4444555554311 012348999999999999999988763
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.30 E-value=0.0007 Score=69.18 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=63.5
Q ss_pred EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHH
Q 039378 218 FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQ 297 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 297 (600)
.++.|+.|+|||.. +..++... ..+|++||++++..|.+.+...+.. .
T Consensus 164 ~~I~G~aGsGKTt~-----I~~~~~~~-----------~~lVlTpT~~aa~~l~~kl~~~~~~---------~------- 211 (446)
T 3vkw_A 164 VLVDGVPGCGKTKE-----ILSRVNFE-----------EDLILVPGRQAAEMIRRRANASGII---------V------- 211 (446)
T ss_dssp EEEEECTTSCHHHH-----HHHHCCTT-----------TCEEEESCHHHHHHHHHHHTTTSCC---------C-------
T ss_pred EEEEcCCCCCHHHH-----HHHHhccC-----------CeEEEeCCHHHHHHHHHHhhhcCcc---------c-------
Confidence 67889999999985 22222211 1499999999999988887543210 0
Q ss_pred HHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEecc
Q 039378 298 ITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSAT 368 (600)
Q Consensus 298 ~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 368 (600)
...+-|.|.+.++. .........+++||||||-.+ . ...+..++...+. .+++++.-.
T Consensus 212 ------~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~---~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 212 ------ATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-H---TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ------CCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-C---HHHHHHHHHHTTC-SEEEEEECT
T ss_pred ------cccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-C---HHHHHHHHHhCCC-CEEEEecCc
Confidence 01233778776543 222222234889999999854 3 2334445555443 556666544
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.11 E-value=0.0019 Score=65.21 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=52.8
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
.|+|+|...+..+...+-+++..+-+.|||.+....++..++..+ +..+++++|++..|..+.+.+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~---------g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK---------DKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSS---------SCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCC---------CCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 689999999987755566889999999999976555444443321 3458999999999988887777654
No 106
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.90 E-value=0.007 Score=65.34 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=75.6
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.|+|+|...+..+...+-+++..+-|+|||.+....++..+...+ +..+++++|++..|..+.+.+..+..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~---------~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK---------DKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS---------SCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC---------CCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 589999999987755667899999999999976554444444332 33589999999999999888887654
Q ss_pred CCC--ceEEEEeCCCChHHHHHHHhcCCcEEEEc--hHHHHHHHHccCCCccceEEEEEcccchhhc
Q 039378 280 PCG--VKSVCVYGGTSKQPQITALRSGVDIVIGT--PGRLIDLIEMNVCHLSEVSFVVLDEADRMLD 342 (600)
Q Consensus 280 ~~~--~~~~~~~~g~~~~~~~~~l~~~~~Iiv~T--p~~l~~~l~~~~~~l~~~~~lViDEah~l~~ 342 (600)
..+ +.......... . ..+..|..|.+.+ |+.+.- .+++++|+||+|.+.+
T Consensus 234 ~~p~~~~~~~~~~~~~---~-i~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 234 LLPDFLQPGIVEWNKG---S-IELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPN 287 (592)
T ss_dssp TSCTTTSCCEEEECSS---E-EEETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTT
T ss_pred hChHhhccccccCCcc---E-EEecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCc
Confidence 432 11100000000 0 0112344444433 443311 1367999999998754
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.81 E-value=0.0043 Score=55.63 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=21.8
Q ss_pred cHHHHHHhhhhh---------cCCcEEEEecCCCCchhH
Q 039378 202 SPIQSHAWPFLL---------NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 202 ~~~Q~~~i~~il---------~~~d~i~~a~TGsGKT~~ 231 (600)
.+.|..++..+. .++.+++.||+|+|||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 345666555443 367799999999999985
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.75 E-value=0.0027 Score=58.93 Aligned_cols=90 Identities=14% Similarity=0.153 Sum_probs=49.4
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCCh
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSK 294 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~ 294 (600)
|.=+++.|+||+|||.+ ++-++.++... +.+++++.|...-. ....+....++. .
T Consensus 12 G~i~litG~mGsGKTT~-ll~~~~r~~~~----------g~kVli~~~~~d~r-----~~~~i~srlG~~---------~ 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAE-LIRRLHRLEYA----------DVKYLVFKPKIDTR-----SIRNIQSRTGTS---------L 66 (223)
T ss_dssp CEEEEEECSTTSCHHHH-HHHHHHHHHHT----------TCCEEEEEECCCGG-----GCSSCCCCCCCS---------S
T ss_pred cEEEEEECCCCCcHHHH-HHHHHHHHHhc----------CCEEEEEEeccCch-----HHHHHHHhcCCC---------c
Confidence 33467889999999987 33344444332 22378887764210 000111111111 0
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchh
Q 039378 295 QPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRM 340 (600)
Q Consensus 295 ~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l 340 (600)
..+-+.+...++..+.... .-..+++|||||++.+
T Consensus 67 ----------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 ----------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp ----------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred ----------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 1233556666777665432 2345899999999975
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.73 E-value=0.0034 Score=56.80 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=24.7
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccH
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTR 264 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr 264 (600)
|+=.++.|+||+|||.+ ++-++.++... +.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~-ll~~a~r~~~~----------g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEE-LIRRIRRAKIA----------KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHH-HHHHHHHHHHT----------TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHH-HHHHHHHHHHC----------CCEEEEEEecc
Confidence 33467789999999987 33334443322 23478998873
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.67 E-value=0.0027 Score=57.25 Aligned_cols=39 Identities=18% Similarity=0.108 Sum_probs=24.3
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccH
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTR 264 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr 264 (600)
|.=.++.|++|+|||... +-++..+... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~l-l~~~~~~~~~----------g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTEL-LSFVEIYKLG----------KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHH-HHHHHHHHHT----------TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHH-HHHHHHHHHC----------CCeEEEEeecc
Confidence 445678999999999863 2333333322 22378888873
No 111
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.32 E-value=0.0047 Score=56.50 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=23.1
Q ss_pred EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccH
Q 039378 218 FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTR 264 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr 264 (600)
.++.+++|+|||... +-.+.++... +-+++|+.|..
T Consensus 31 ~vitG~MgsGKTT~l-L~~a~r~~~~----------g~kVli~k~~~ 66 (214)
T 2j9r_A 31 EVICGSMFSGKSEEL-IRRVRRTQFA----------KQHAIVFKPCI 66 (214)
T ss_dssp EEEECSTTSCHHHHH-HHHHHHHHHT----------TCCEEEEECC-
T ss_pred EEEECCCCCcHHHHH-HHHHHHHHHC----------CCEEEEEEecc
Confidence 467899999999873 3333333322 23378998875
No 112
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.27 E-value=0.011 Score=64.94 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=52.7
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.+++-|++++... +..++|.|+.|||||.+ ++.-+.+++.... .....+|+|+.|+..+.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~-l~~ri~~ll~~~~------~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRV-ITNKIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHH-HHHHHHHHHHHHC------CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHH-HHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4789999999863 56789999999999997 3333444444311 0123489999999999999999988754
No 113
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.27 E-value=0.0026 Score=55.19 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=16.0
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.+..+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677899999999999984
No 114
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.20 E-value=0.011 Score=54.68 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=24.4
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccH
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTR 264 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr 264 (600)
|.=.++.|+||+|||... +-.+.+.... +-+++|+-|..
T Consensus 19 g~l~v~~G~MgsGKTT~l-L~~~~r~~~~----------g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTEL-MRRVRRFQIA----------QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHH-HHHHHHHHTT----------TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHH-HHHHHHHHHC----------CCeEEEEeecC
Confidence 344577899999999873 3333333222 33478888864
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.14 E-value=0.022 Score=56.28 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=14.9
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 35799999999999985
No 116
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.06 E-value=0.0089 Score=53.74 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=23.6
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEccc
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPT 263 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Pt 263 (600)
+=.++.||+|||||.- ++-++.+.... +.+++++.|.
T Consensus 21 ~l~fiyG~MgsGKTt~-Ll~~i~n~~~~----------~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTE-LMRRVRRFQIA----------QYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHH-HHHHHHHHHHT----------TCCEEEEEET
T ss_pred EEEEEECCCCCcHHHH-HHHHHHHHHHc----------CCeEEEEccc
Confidence 3467789999999964 34444443332 2237888886
No 117
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.77 E-value=0.011 Score=53.99 Aligned_cols=38 Identities=13% Similarity=-0.016 Sum_probs=24.2
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccH
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTR 264 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr 264 (600)
.=.++.+++|+|||.. ++-.+.++... +.+++|+.|..
T Consensus 29 ~I~vitG~M~sGKTT~-Llr~~~r~~~~----------g~kvli~kp~~ 66 (219)
T 3e2i_A 29 WIECITGSMFSGKSEE-LIRRLRRGIYA----------KQKVVVFKPAI 66 (219)
T ss_dssp EEEEEEECTTSCHHHH-HHHHHHHHHHT----------TCCEEEEEEC-
T ss_pred eEEEEECCCCCCHHHH-HHHHHHHHHHc----------CCceEEEEecc
Confidence 3357889999999986 33334443322 23378998864
No 118
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.71 E-value=0.021 Score=61.42 Aligned_cols=113 Identities=18% Similarity=0.257 Sum_probs=73.5
Q ss_pred CCcHHHHHHhhhhhcC--CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 200 NPSPIQSHAWPFLLNG--RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~--~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
.+|.-|.+++..++.- .-.++.|+-|.|||.+..+. +..+. . .++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~-~a~~~-~------------~~~vtAP~~~a~~~l~~~~~~- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQL-ISRIA-G------------RAIVTAPAKASTDVLAQFAGE- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHH-HHHSS-S------------CEEEECSSCCSCHHHHHHHGG-
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHH-HHHHH-h------------CcEEECCCHHHHHHHHHHhhC-
Confidence 6789999999888763 34788899999999754332 22221 1 158999998876655443221
Q ss_pred cCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEEEcccchhhcCCChHHHHHHHHhcC
Q 039378 278 GKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMGFEEPVRFILSKIS 357 (600)
Q Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~~~~il~~~~ 357 (600)
.|-+..|..+.. .+...++||||||=.+ -.+.+..++...
T Consensus 240 ----------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~~- 279 (671)
T 2zpa_A 240 ----------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSRF- 279 (671)
T ss_dssp ----------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTTS-
T ss_pred ----------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhhC-
Confidence 133446665432 2345889999999876 345566666533
Q ss_pred cCCcEEEEeccCC
Q 039378 358 LARQMVMFSATWP 370 (600)
Q Consensus 358 ~~~q~i~~SATl~ 370 (600)
..++||.|..
T Consensus 280 ---~~v~~~tTv~ 289 (671)
T 2zpa_A 280 ---PRTLLTTTVQ 289 (671)
T ss_dssp ---SEEEEEEEBS
T ss_pred ---CeEEEEecCC
Confidence 3688888853
No 119
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.055 Score=52.98 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=18.4
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHH
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVL 241 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~ 241 (600)
+.++++.||+|+|||.+. -.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 357999999999999863 33344443
No 120
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.49 E-value=0.054 Score=55.97 Aligned_cols=17 Identities=24% Similarity=0.124 Sum_probs=14.9
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
.+.+++.||+|+|||..
T Consensus 130 ~~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHL 146 (440)
T ss_dssp SCCEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 35799999999999985
No 121
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.25 E-value=0.11 Score=49.85 Aligned_cols=16 Identities=25% Similarity=0.115 Sum_probs=14.3
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
..+++.||+|+|||..
T Consensus 65 ~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4699999999999985
No 122
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.17 E-value=0.096 Score=52.83 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=14.9
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+..+++.||+|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 35799999999999985
No 123
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.10 E-value=0.033 Score=65.47 Aligned_cols=71 Identities=21% Similarity=0.149 Sum_probs=51.8
Q ss_pred CCcHHHHHHhhhhhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 200 NPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 200 ~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
.+|+-|.++|..- +++++|.|..|||||.+.+--+ .+++..... .....++|+|++|+..|..+.+.+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri-~~ll~~~~~----~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERM-IRKITAEEN----PIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHH-HHHHSCSSS----CCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHH-HHHHhcCCC----CCCccceEEEeccHHHHHHHHHHHHHH
Confidence 5789999999864 7899999999999999733323 333332110 112345899999999999999988774
No 124
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.97 E-value=0.1 Score=47.33 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=14.6
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
..+++.||+|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999985
No 125
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.96 E-value=0.071 Score=54.55 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=35.3
Q ss_pred cceEEEEEcccchhh---cCCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhc
Q 039378 327 SEVSFVVLDEADRML---DMGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYM 381 (600)
Q Consensus 327 ~~~~~lViDEah~l~---~~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~ 381 (600)
..+++||||++-++. +..+...+..+...+.+..-+++++|+........+..|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 468899999998653 2223445555666665556678888887655555555443
No 126
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.66 E-value=0.093 Score=52.01 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=23.7
Q ss_pred CcHHHHHHhhhhh----cCC---cEEEEecCCCCchhHh
Q 039378 201 PSPIQSHAWPFLL----NGR---DFIGIAKTGSGKTIAF 232 (600)
Q Consensus 201 ~~~~Q~~~i~~il----~~~---d~i~~a~TGsGKT~~~ 232 (600)
++|+|..++..+. +++ .+++.||.|+|||..+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 4688888776544 343 3899999999999863
No 127
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.65 E-value=0.14 Score=46.71 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=22.5
Q ss_pred cceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEe
Q 039378 327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFS 366 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~S 366 (600)
....+|||||+|.+... ....+..++........+|+.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45689999999987542 2233444455444444444443
No 128
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.59 E-value=0.041 Score=51.39 Aligned_cols=18 Identities=17% Similarity=0.036 Sum_probs=15.6
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.++.+++.||+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 356899999999999985
No 129
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.21 E-value=0.17 Score=44.74 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.7
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
...+++.||+|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 35799999999999985
No 130
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.21 E-value=0.13 Score=50.26 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=15.3
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+.++++.||+|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999985
No 131
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.11 E-value=0.14 Score=56.75 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=64.5
Q ss_pred CCeEEEEEeehhcHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-ccccCCCCCCcCEEEE
Q 039378 429 RNRVLVFALYQLEADRLENMLRR----SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAARGLDIPDVEVVIN 503 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~~Gldi~~v~~VI~ 503 (600)
+.+++|.++++.-+...+..+.. .++.+..+||+++..+|...+..+.+|...|+|+|. .+...+++.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 57899999999988887776654 378999999999999999999999999999999995 4556788889998884
No 132
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.80 E-value=0.22 Score=50.20 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=14.2
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+.+++.||+|+|||..
T Consensus 46 ~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 4699999999999985
No 133
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.51 E-value=0.4 Score=47.09 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=14.4
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+.+++.||+|+|||..
T Consensus 52 ~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 52 SGILLYGPPGTGKSYL 67 (322)
T ss_dssp CEEEEECSSSSCHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 4699999999999985
No 134
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.46 E-value=0.076 Score=51.86 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.8
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+.++++.||+|+|||..
T Consensus 67 ~~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 34699999999999985
No 135
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.19 E-value=0.28 Score=49.19 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.8
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+..+++.||+|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45799999999999985
No 136
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.00 E-value=0.49 Score=41.78 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=14.4
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
..+++.||+|+|||..
T Consensus 44 ~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAI 59 (195)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CceEEECCCCCCHHHH
Confidence 5699999999999985
No 137
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.97 E-value=0.14 Score=51.01 Aligned_cols=42 Identities=17% Similarity=0.292 Sum_probs=24.6
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEecc
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSAT 368 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SAT 368 (600)
..+.+++|+||+|.| +......+..++...+....+|+.|..
T Consensus 132 ~~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 132 AHRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp --CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 346789999999994 322334455556655554445554443
No 138
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.97 E-value=0.097 Score=51.57 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=24.0
Q ss_pred cceEEEEEcccchhh-cCCChHHHHHHHHhcCcCCcEEEEecc
Q 039378 327 SEVSFVVLDEADRML-DMGFEEPVRFILSKISLARQMVMFSAT 368 (600)
Q Consensus 327 ~~~~~lViDEah~l~-~~~~~~~~~~il~~~~~~~q~i~~SAT 368 (600)
...++|||||+|.+. .. ....+..++...+...++|+ +++
T Consensus 104 ~~~~vliiDEi~~l~~~~-~~~~L~~~le~~~~~~~iI~-~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAE-SQRHLRSFMEAYSSNCSIII-TAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHH-HHHHHHHHHHHHGGGCEEEE-EES
T ss_pred CCCeEEEEECCcccCcHH-HHHHHHHHHHhCCCCcEEEE-EeC
Confidence 468899999999986 32 23344444554444444444 444
No 139
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.92 E-value=0.42 Score=46.42 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.5
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.++.+++.||+|+|||+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCSEEEEECSSSSSHHHH
T ss_pred CCceEEEECCCCcCHHHH
Confidence 356799999999999985
No 140
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.84 E-value=0.21 Score=50.38 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=13.8
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 689999999999985
No 141
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.73 E-value=0.4 Score=47.53 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=22.8
Q ss_pred cceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEe
Q 039378 327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFS 366 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~S 366 (600)
....+|+|||+|.+... ....+..++...+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 45689999999988542 2233444455444444444433
No 142
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.50 E-value=0.99 Score=46.10 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=28.5
Q ss_pred ceEEEEEcccchhhcC-CChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhc
Q 039378 328 EVSFVVLDEADRMLDM-GFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYM 381 (600)
Q Consensus 328 ~~~~lViDEah~l~~~-~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~ 381 (600)
.+++||||.+=++... .....+..+.....+..-++++.||........+..|.
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFK 236 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHH
Confidence 3678888887543211 11223334444444444567777876555554444443
No 143
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.46 E-value=0.15 Score=52.10 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=33.1
Q ss_pred ccccccccCCCCHHHHHhhc-----CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhH
Q 039378 177 KALKSFTESKLPDDVLGCCK-----NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 177 ~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~ 231 (600)
.+-.+|.+.+-.......+. .+.+|--++...++. .+.+|+.||+|+|||+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~---prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA---PKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCC---CCEEEEESCTTSSHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC---CCeeEEECcCCCCHHHH
Confidence 34567888887776666553 122333333333322 36799999999999985
No 144
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.37 E-value=0.37 Score=47.16 Aligned_cols=42 Identities=19% Similarity=0.353 Sum_probs=23.7
Q ss_pred cceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCC
Q 039378 327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWP 370 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~ 370 (600)
....+|||||+|.+... ....+..++...+....+| ++++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i-~~~~~~ 150 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFI-LSCNYS 150 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEE-EEESCG
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEE-EEeCCc
Confidence 45789999999998542 2233444444444444444 444433
No 145
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.28 E-value=0.4 Score=45.97 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=15.5
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
..+.+++.||+|+|||..
T Consensus 50 ~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCSEEEEESSSSSSHHHH
T ss_pred CCCeEEEECCCCCcHHHH
Confidence 456799999999999985
No 146
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.83 E-value=0.31 Score=48.16 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=14.4
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
..+++.||+|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 4799999999999985
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.76 E-value=1.5 Score=40.14 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=13.5
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+++.||+|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999985
No 148
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.37 E-value=0.3 Score=48.73 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=14.5
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+.+++.||+|+|||+.
T Consensus 85 ~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCEEEECSTTSCHHHH
T ss_pred ceEEEECCCCCcHHHH
Confidence 5799999999999985
No 149
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.53 E-value=0.67 Score=47.18 Aligned_cols=76 Identities=12% Similarity=0.123 Sum_probs=63.6
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-ccc---cCCCCCCcCE
Q 039378 428 QRNRVLVFALYQLEADRLENMLRR---SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAA---RGLDIPDVEV 500 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~---~Gldi~~v~~ 500 (600)
.+.++||.++++.-+..++..+.. .++.+..+||+.+..++...+..+..|...|+|+|. .+. .-++...+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 467899999999999999999988 578999999999999999899999999999999995 221 1255667888
Q ss_pred EEE
Q 039378 501 VIN 503 (600)
Q Consensus 501 VI~ 503 (600)
||.
T Consensus 143 iVi 145 (414)
T 3oiy_A 143 VFV 145 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 150
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.48 E-value=0.45 Score=49.08 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=14.2
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
..+++.||+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 3689999999999985
No 151
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.31 E-value=0.28 Score=48.23 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=14.5
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+.+++.||+|+|||+.
T Consensus 46 ~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYL 61 (322)
T ss_dssp SEEEEESSSSSCHHHH
T ss_pred ceEEEECCCCccHHHH
Confidence 5799999999999985
No 152
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.28 E-value=0.32 Score=48.99 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=28.7
Q ss_pred ccccccCCCCHHHHHhhc-----CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhH
Q 039378 179 LKSFTESKLPDDVLGCCK-----NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 179 ~~~~~~~~l~~~l~~~~~-----~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~ 231 (600)
--.|.+.+=-......+. .+.+|--++...++ ..+.+|+.||+|+|||+.
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~---~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA---QPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---CCCCEEEESCSSSSHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCceEEeCCCCCCHHHH
Confidence 346777765555554443 11222222322222 236799999999999985
No 153
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.15 E-value=0.65 Score=46.95 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=15.1
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
.+.+++.||+|+|||..
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46899999999999985
No 154
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.02 E-value=1.3 Score=45.74 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=18.3
Q ss_pred hcCCcEEEEecCCCCchhHhhHHHHHHH
Q 039378 213 LNGRDFIGIAKTGSGKTIAFGVPAMMHV 240 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~~~lp~l~~~ 240 (600)
..|.-+++.|++|+|||.. ++-+...+
T Consensus 201 ~~G~liiI~G~pG~GKTtl-~l~ia~~~ 227 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAF-ALNIAQNV 227 (454)
T ss_dssp CTTCEEEEECCTTSCHHHH-HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 3455688899999999975 33333333
No 155
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.85 E-value=0.42 Score=46.24 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=13.9
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+.+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688899999999985
No 156
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.73 E-value=1.7 Score=42.00 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=14.9
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.++-+++.+++|+|||..
T Consensus 104 ~g~vi~lvG~~GsGKTTl 121 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTT 121 (296)
T ss_dssp CSSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 355678889999999985
No 157
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.65 E-value=1.2 Score=44.35 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=13.3
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+++.||.|+|||..
T Consensus 40 ~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSI 54 (373)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999985
No 158
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.65 E-value=0.37 Score=47.15 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=14.5
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
..+++.||+|+|||..
T Consensus 39 ~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCEEECCTTCCCHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 5799999999999985
No 159
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=89.53 E-value=0.49 Score=49.36 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=14.9
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
...+++.||+|+|||+.
T Consensus 238 ~~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLI 254 (489)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCcEEEECcCCCCHHHH
Confidence 35799999999999985
No 160
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=89.49 E-value=1.2 Score=46.13 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=38.2
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcC
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGK 279 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~ 279 (600)
.+....+.+-||||||++ +..+ .... +..+|||+|+...|.|+++.+..+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l---~~~~---------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEI---AERH---------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHH---HHHS---------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHH--HHHH---HHHh---------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 455688899999999985 2222 2211 11269999999999999999999864
No 161
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.33 E-value=1 Score=44.51 Aligned_cols=38 Identities=18% Similarity=0.427 Sum_probs=23.0
Q ss_pred cceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEE
Q 039378 327 SEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMF 365 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~ 365 (600)
...+++|+||+|.|... ....+..++...+....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEE
Confidence 45789999999988542 223344555555444444443
No 162
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.18 E-value=0.78 Score=53.02 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=64.0
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-cccc---CCCCCCcCE
Q 039378 428 QRNRVLVFALYQLEADRLENMLRR---SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAAR---GLDIPDVEV 500 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~~---Gldi~~v~~ 500 (600)
.+.++||.++++.-+.+++..|.. .++.+..+||+++..+|...+..+..|...|||+|. .+.. -+++.++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 467899999999999999999988 467999999999999999999999999999999994 2211 155678888
Q ss_pred EEE
Q 039378 501 VIN 503 (600)
Q Consensus 501 VI~ 503 (600)
||.
T Consensus 200 lVi 202 (1104)
T 4ddu_A 200 VFV 202 (1104)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 163
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.11 E-value=0.53 Score=45.90 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=13.6
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
++++.||.|+|||..
T Consensus 44 ~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 44 HMIISGMPGIGKTTS 58 (323)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 499999999999985
No 164
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.06 E-value=1.7 Score=39.51 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=53.6
Q ss_pred CeEEEEEeehhcHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-cc-----ccCCCCCCc
Q 039378 430 NRVLVFALYQLEADRLENMLRRS-----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VA-----ARGLDIPDV 498 (600)
Q Consensus 430 ~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~-----~~Gldi~~v 498 (600)
.++||.|+++.-+..+++.+... ++.+..++|+.+...+... +..+...|+|+|. .+ ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999888877654 6889999999887665433 4456778999994 22 234677788
Q ss_pred CEEEE
Q 039378 499 EVVIN 503 (600)
Q Consensus 499 ~~VI~ 503 (600)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 165
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.90 E-value=0.37 Score=49.27 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=28.1
Q ss_pred ccccccCCCCHHHHHhhc-----CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhH
Q 039378 179 LKSFTESKLPDDVLGCCK-----NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 179 ~~~~~~~~l~~~l~~~~~-----~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~ 231 (600)
--.|.+.+--......+. .+.+|--++...++ ..+.+|+.||+|+|||+.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~---~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK---PPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeEEEECCCCCcHHHH
Confidence 345777765555554443 11122222222221 236799999999999985
No 166
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.90 E-value=0.48 Score=48.49 Aligned_cols=49 Identities=12% Similarity=0.206 Sum_probs=27.9
Q ss_pred cccccCCCCHHHHHhhcC-----CCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhH
Q 039378 180 KSFTESKLPDDVLGCCKN-----FKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 180 ~~~~~~~l~~~l~~~~~~-----~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~ 231 (600)
-.|.+.+--..+...+.. +.+|--++...+ -..+.+|+.||+|+|||+.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHHH
Confidence 457777655555555431 111212222211 1236799999999999984
No 167
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.88 E-value=1.4 Score=45.26 Aligned_cols=115 Identities=17% Similarity=0.051 Sum_probs=53.6
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTS 293 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~ 293 (600)
.|.=++++|++|+|||.. ++-+...+.... +..++++..- .-..|+..++........... +..|.-
T Consensus 199 ~G~l~ii~G~pg~GKT~l-al~ia~~~a~~~---------g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~--l~~g~l 265 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAF-ALTIAQNAALKE---------GVGVGIYSLE-MPAAQLTLRMMCSEARIDMNR--VRLGQL 265 (444)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHHHHTT---------CCCEEEEESS-SCHHHHHHHHHHHHTTCCTTT--CCGGGC
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHHhC---------CCeEEEEECC-CCHHHHHHHHHHHHcCCCHHH--HhCCCC
Confidence 445578899999999975 343344433221 1226666532 223444444332111111100 011111
Q ss_pred hHHHHHH-------HhcCCcEEEE-----chHHHHHHHHccCCCccceEEEEEcccchhhcC
Q 039378 294 KQPQITA-------LRSGVDIVIG-----TPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDM 343 (600)
Q Consensus 294 ~~~~~~~-------l~~~~~Iiv~-----Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~ 343 (600)
....+.. +. ...+.+. |+..+...+.+-. .-..+++||||..+.+...
T Consensus 266 ~~~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~-~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 266 TDRDFSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLV-SQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp CHHHHHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHH-HHSCCCEEEEECGGGCBCC
T ss_pred CHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEcChhhcCCC
Confidence 1222211 22 2345553 4455544433211 0125789999999988643
No 168
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.87 E-value=0.4 Score=49.46 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.9
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
.+.+++.||+|+|||+.
T Consensus 167 ~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CSEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 36799999999999985
No 169
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.59 E-value=4.4 Score=36.17 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=32.7
Q ss_pred ccceEEEEEcccchhhcCCCh--HHHHHHHHhcCcCCcEEEEeccCChhHHHH
Q 039378 326 LSEVSFVVLDEADRMLDMGFE--EPVRFILSKISLARQMVMFSATWPIEVHKL 376 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~--~~~~~il~~~~~~~q~i~~SATl~~~~~~~ 376 (600)
-..+++||+||+-..+..++. ..+..++..-+....+|+.+-..|+.+..+
T Consensus 118 ~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 118 DPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred cCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 357899999999876665542 345555555555555666666666665554
No 170
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.55 E-value=2.3 Score=42.89 Aligned_cols=16 Identities=38% Similarity=0.507 Sum_probs=13.5
Q ss_pred CcEEE--EecCCCCchhH
Q 039378 216 RDFIG--IAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~--~a~TGsGKT~~ 231 (600)
..+++ .||.|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 35778 89999999985
No 171
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.40 E-value=0.53 Score=47.99 Aligned_cols=50 Identities=12% Similarity=0.059 Sum_probs=28.1
Q ss_pred ccccccCCCCHHHHHhhc-----CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhH
Q 039378 179 LKSFTESKLPDDVLGCCK-----NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 179 ~~~~~~~~l~~~l~~~~~-----~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~ 231 (600)
--.|.+.+=-..+...+. .+.+|--++...++ ..+.+++.||+|+|||+.
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~---~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGID---PPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCCEEEEESCTTTTHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCceEEEECCCCCCHHHH
Confidence 346777765555554443 11122222222221 235799999999999985
No 172
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.36 E-value=1.9 Score=50.06 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=64.9
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEec-cccccCCCCCCcCEEE
Q 039378 428 QRNRVLVFALYQLEADRLENMLRR----SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVAT-DVAARGLDIPDVEVVI 502 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT-~~~~~Gldi~~v~~VI 502 (600)
.+.+++|.|++..-+.+.+..+.. .++.+..+++..+..++...+.....|...|+|+| ..+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 356999999999988888877764 36789999999999999999999999999999999 5666678888888877
Q ss_pred E
Q 039378 503 N 503 (600)
Q Consensus 503 ~ 503 (600)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 4
No 173
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=87.93 E-value=3.1 Score=35.85 Aligned_cols=70 Identities=19% Similarity=0.342 Sum_probs=50.7
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH---h-cCCcEEEEchHHHHHHHHccCCCccceEE
Q 039378 256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITAL---R-SGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331 (600)
Q Consensus 256 ~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~ 331 (600)
++||.|+++.-+..+.+.+... ++.+..++|+.........+ . ....|+|+|.- + ...+++..+++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~Gld~~~~~~ 106 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV-----A-ARGIDIENISL 106 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----G-TTTCCCSCCSE
T ss_pred cEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----h-hcCCchhcCCE
Confidence 4899999999999999998876 47788888887665543332 2 34789999932 2 23456777888
Q ss_pred EEEc
Q 039378 332 VVLD 335 (600)
Q Consensus 332 lViD 335 (600)
||.-
T Consensus 107 Vi~~ 110 (163)
T 2hjv_A 107 VINY 110 (163)
T ss_dssp EEES
T ss_pred EEEe
Confidence 8763
No 174
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=87.63 E-value=3 Score=36.45 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=51.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH---h-cCCcEEEEchHHHHHHHHccCCCccce
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITAL---R-SGVDIVIGTPGRLIDLIEMNVCHLSEV 329 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 329 (600)
+.++||.|+++..+..+...+... ++.+..++|+.........+ . ...+|+|+|.- + ...+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~-~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----C-ARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----C-CTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----h-hcCCCcccC
Confidence 346899999999999999888875 46788888887765544332 2 34789999942 1 235577888
Q ss_pred EEEEE
Q 039378 330 SFVVL 334 (600)
Q Consensus 330 ~~lVi 334 (600)
++||.
T Consensus 104 ~~Vi~ 108 (175)
T 2rb4_A 104 TIVVN 108 (175)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98885
No 175
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.35 E-value=1.2 Score=43.09 Aligned_cols=15 Identities=40% Similarity=0.541 Sum_probs=13.7
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+++.||+|+|||..
T Consensus 49 ~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 49 SFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEESCSSSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 689999999999985
No 176
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.24 E-value=0.66 Score=43.31 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=15.8
Q ss_pred hcCCcEEEEecCCCCchhH
Q 039378 213 LNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~ 231 (600)
..|.-+.+.||+|+|||..
T Consensus 28 ~~G~~~~l~GpnGsGKSTL 46 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred CCCcEEEEEeCCCCCHHHH
Confidence 3566788899999999985
No 177
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=87.21 E-value=1.2 Score=43.18 Aligned_cols=43 Identities=12% Similarity=0.184 Sum_probs=23.9
Q ss_pred ccceEEEEEcccchhhcCCChHHHHHHHHhcCcCCcEEEEeccCC
Q 039378 326 LSEVSFVVLDEADRMLDMGFEEPVRFILSKISLARQMVMFSATWP 370 (600)
Q Consensus 326 l~~~~~lViDEah~l~~~~~~~~~~~il~~~~~~~q~i~~SATl~ 370 (600)
....+++||||||.|.... ...+...+...+... ++++.++-+
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t-~fIl~t~~~ 122 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYA-VIVLNTRRW 122 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTE-EEEEEESCG
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCe-EEEEEECCh
Confidence 4568999999999986432 122333444433333 444444433
No 178
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=86.90 E-value=0.64 Score=49.27 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=15.7
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.+..+++.||+|+|||..
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466799999999999985
No 179
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.42 E-value=2.9 Score=39.72 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=17.2
Q ss_pred hhcCCcEEEEecCCCCchhHh
Q 039378 212 LLNGRDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 212 il~~~d~i~~a~TGsGKT~~~ 232 (600)
+..|.-+++.||+|+|||...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHH
Confidence 446777899999999999853
No 180
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=86.22 E-value=3.5 Score=36.69 Aligned_cols=70 Identities=21% Similarity=0.393 Sum_probs=51.1
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH---h-cCCcEEEEchHHHHHHHHccCCCccceE
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITAL---R-SGVDIVIGTPGRLIDLIEMNVCHLSEVS 330 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~ 330 (600)
+++||.|+++.-+..+.+.+...+ +.+..++|+.........+ . ....|+|+|. .+. ..+++..++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~g----~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLKG----VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS-KGLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH-TTCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh-cCCCcccCC
Confidence 358999999999999999988763 7788888887765543332 2 3578999993 222 245677888
Q ss_pred EEEE
Q 039378 331 FVVL 334 (600)
Q Consensus 331 ~lVi 334 (600)
+||.
T Consensus 125 ~VI~ 128 (191)
T 2p6n_A 125 HVIN 128 (191)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 181
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=86.15 E-value=4 Score=38.03 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=57.4
Q ss_pred HHHHHHHHhhc-CCCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-cc-
Q 039378 417 LLALLEKYHKS-QRNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VA- 489 (600)
Q Consensus 417 l~~~l~~~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~- 489 (600)
++.++..+... .+.++||.++++.-+..+++.+... ++.+..++|+.+...+...+ .+...|+|+|. .+
T Consensus 98 ~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~ 173 (249)
T 3ber_A 98 ALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLI 173 (249)
T ss_dssp HHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHH
Confidence 34444444332 2457999999999998888777654 78899999998866544333 24678999994 22
Q ss_pred -----ccCCCCCCcCEEEE
Q 039378 490 -----ARGLDIPDVEVVIN 503 (600)
Q Consensus 490 -----~~Gldi~~v~~VI~ 503 (600)
..++++..+++||.
T Consensus 174 ~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 174 DHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp HHHHHSTTCCCTTCCEEEE
T ss_pred HHHHcCCCcCccccCEEEE
Confidence 14577888888774
No 182
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=86.08 E-value=4.6 Score=34.77 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=51.0
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH---h-cCCcEEEEchHHHHHHHHccCCCccceE
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITAL---R-SGVDIVIGTPGRLIDLIEMNVCHLSEVS 330 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~ 330 (600)
.++||.|+++.-+..+...+... ++.+..++|+.........+ . ....|+|+|.- + ...+++..++
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~G~d~~~~~ 100 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----L-ARGIDVQQVS 100 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-----G-TTTCCCCSCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-----h-hcCCCcccCC
Confidence 35899999999999999988875 36778888887765543332 2 34789999942 2 2345677788
Q ss_pred EEEEcc
Q 039378 331 FVVLDE 336 (600)
Q Consensus 331 ~lViDE 336 (600)
+||.-.
T Consensus 101 ~Vi~~~ 106 (165)
T 1fuk_A 101 LVINYD 106 (165)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 887633
No 183
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.81 E-value=0.54 Score=39.81 Aligned_cols=21 Identities=10% Similarity=-0.086 Sum_probs=17.2
Q ss_pred hhhcCCcEEEEecCCCCchhH
Q 039378 211 FLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 211 ~il~~~d~i~~a~TGsGKT~~ 231 (600)
.+..+.++++.||+|+|||..
T Consensus 23 ~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHH
T ss_pred HhCCCCcEEEECCCCccHHHH
Confidence 344567899999999999974
No 184
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=85.75 E-value=0.45 Score=46.29 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=13.7
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
++++.||+|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 599999999999985
No 185
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=85.20 E-value=4.1 Score=36.95 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=50.9
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH---h-cCCcEEEEchHHHHHHHHccCCCccceEE
Q 039378 256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITAL---R-SGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331 (600)
Q Consensus 256 ~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~ 331 (600)
++||.|+++.-+..+.+.+...+ +.+..++|+.....+...+ . ...+|+|+|. .+ ...+++..+++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~~----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~v~~ 102 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRLG----HPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQVDL 102 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHT----CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCCBSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHcC----CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCccCcE
Confidence 48999999999999999888764 7788889988766554333 2 3478999994 22 23556778888
Q ss_pred EEE
Q 039378 332 VVL 334 (600)
Q Consensus 332 lVi 334 (600)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 186
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=85.17 E-value=8 Score=29.96 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=41.2
Q ss_pred EEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q 039378 432 VLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTC 480 (600)
Q Consensus 432 ~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~ 480 (600)
.+||...-+-+..+.+.++..|..+..++++...+.|..-++.|.....
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgv 53 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGV 53 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCC
Confidence 4667777777788888899999999999999999999999999976543
No 187
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.77 E-value=1.2 Score=46.74 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=24.3
Q ss_pred cceEEEEEcccchhhcCCC--hHHHHHHHHhcCcCCcEEEEeccC
Q 039378 327 SEVSFVVLDEADRMLDMGF--EEPVRFILSKISLARQMVMFSATW 369 (600)
Q Consensus 327 ~~~~~lViDEah~l~~~~~--~~~~~~il~~~~~~~q~i~~SATl 369 (600)
....+|||||+|.+..... ...+..++... ...+|+.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 3567999999999865321 13333444332 34567777663
No 188
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=84.65 E-value=4.5 Score=37.39 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=53.0
Q ss_pred CCeEEEEEeehhcHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-----ccc-cCCCCCCc
Q 039378 429 RNRVLVFALYQLEADRLENMLRR----SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-----VAA-RGLDIPDV 498 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-----~~~-~Gldi~~v 498 (600)
+.++||.++++.-+.++.+.+.. .++.+..++|+.+...+...+.. ...|+|+|. .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 56799999999998888776654 47899999999987766554432 478999994 222 34678888
Q ss_pred CEEEE
Q 039378 499 EVVIN 503 (600)
Q Consensus 499 ~~VI~ 503 (600)
++||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88874
No 189
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.57 E-value=0.6 Score=39.64 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=16.8
Q ss_pred hhcCCcEEEEecCCCCchhH
Q 039378 212 LLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 212 il~~~d~i~~a~TGsGKT~~ 231 (600)
...+.++++.||+|+|||..
T Consensus 21 a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHH
T ss_pred hCCCCCEEEECCCCCCHHHH
Confidence 34567899999999999985
No 190
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=83.91 E-value=3.9 Score=36.91 Aligned_cols=18 Identities=28% Similarity=0.054 Sum_probs=14.9
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+++.|++|+|||..
T Consensus 19 ~G~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTL 36 (220)
T ss_dssp TTSEEEEECSTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 345688999999999985
No 191
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=83.59 E-value=1.1 Score=43.96 Aligned_cols=28 Identities=25% Similarity=0.164 Sum_probs=18.5
Q ss_pred hcCCcEEEEecCCCCchhHhhHHHHHHHH
Q 039378 213 LNGRDFIGIAKTGSGKTIAFGVPAMMHVL 241 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~~~lp~l~~~~ 241 (600)
..|.=++++|++|+|||.. ++-+...+.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~-al~ia~~~a 71 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSL-MMNMVLSAL 71 (338)
T ss_dssp CTTCEEEEEECTTSCHHHH-HHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHH-HHHHHHHHH
Confidence 3445588899999999975 333333333
No 192
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=83.40 E-value=2.7 Score=41.10 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=32.3
Q ss_pred ceEEEEEcccchhhc-CCChHHHHHHHHhcCcCCcEEEEeccCChhHHHHHHHhc
Q 039378 328 EVSFVVLDEADRMLD-MGFEEPVRFILSKISLARQMVMFSATWPIEVHKLAEEYM 381 (600)
Q Consensus 328 ~~~~lViDEah~l~~-~~~~~~~~~il~~~~~~~q~i~~SATl~~~~~~~~~~~~ 381 (600)
..+++++|.+-++.. ......+..+...+.+...++++.++....+...+..+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 356788898876432 123344444555555566678888887766665555543
No 193
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.97 E-value=1.6 Score=52.85 Aligned_cols=19 Identities=32% Similarity=0.146 Sum_probs=16.3
Q ss_pred cCCcEEEEecCCCCchhHh
Q 039378 214 NGRDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~ 232 (600)
.++.+++.+|+|+|||..+
T Consensus 1426 ~g~~vll~GppGtGKT~LA 1444 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLT 1444 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3678999999999999863
No 194
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=82.76 E-value=1.1 Score=45.98 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=31.2
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHH
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELAD 268 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~ 268 (600)
...++++.|+||||||.. +-+++..++.. +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~~----------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLLR----------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHHT----------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHHC----------CCcEEEEeCCCchhH
Confidence 456899999999999996 33445554443 334788889888854
No 195
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=82.58 E-value=4 Score=37.50 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=50.0
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-cc----cc--CCCCC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VA----AR--GLDIP 496 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~----~~--Gldi~ 496 (600)
.+.++||.++++.-+..+...+... ++.+..++|+.+.......+ +...|+|+|. .+ .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999999988888764 47899999988765544333 4678999994 22 12 36677
Q ss_pred CcCEEEE
Q 039378 497 DVEVVIN 503 (600)
Q Consensus 497 ~v~~VI~ 503 (600)
.+++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777774
No 196
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=82.49 E-value=2.3 Score=44.78 Aligned_cols=74 Identities=8% Similarity=0.082 Sum_probs=61.5
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-ccc-----cCCCCCCcCEEE
Q 039378 429 RNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAA-----RGLDIPDVEVVI 502 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~-----~Gldi~~v~~VI 502 (600)
.+.+||.++++.-+......|...++.+..+||+.+..++..++..+..|...||++|. .+. ..++...+.+||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999994 221 123335566666
No 197
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=82.28 E-value=2.6 Score=41.23 Aligned_cols=18 Identities=28% Similarity=0.089 Sum_probs=14.9
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+++.|++|+|||..
T Consensus 106 ~G~i~~i~G~~GsGKT~l 123 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQL 123 (324)
T ss_dssp TTSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHhHH
Confidence 345688999999999985
No 198
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=82.06 E-value=2.2 Score=41.39 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=48.5
Q ss_pred cEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHH
Q 039378 217 DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQP 296 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 296 (600)
-+++.+|+|+|||.. ++.++....... .+..|+++..-..+. +. .+.+++-. ..
T Consensus 30 iteI~G~pGsGKTtL-~Lq~~~~~~~~g--------~g~~vlyId~E~s~~-~~--ra~~lGvd--~d------------ 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNF-GLTMVSSYMRQY--------PDAVCLFYDSEFGIT-PA--YLRSMGVD--PE------------ 83 (333)
T ss_dssp EEEEEESSSSSHHHH-HHHHHHHHHHHC--------TTCEEEEEESSCCCC-HH--HHHHTTCC--GG------------
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHHhcC--------CCceEEEEeccchhh-HH--HHHHhCCC--HH------------
Confidence 478899999999986 444444444321 123478887654443 22 24555422 11
Q ss_pred HHHHHhcCCcEEEEchHH---H-HHHHHcc-CCCccceEEEEEcccchhh
Q 039378 297 QITALRSGVDIVIGTPGR---L-IDLIEMN-VCHLSEVSFVVLDEADRML 341 (600)
Q Consensus 297 ~~~~l~~~~~Iiv~Tp~~---l-~~~l~~~-~~~l~~~~~lViDEah~l~ 341 (600)
++++..|.. + +..+..- .+.-..+++||||=+..+.
T Consensus 84 ---------~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 ---------RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ---------GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred ---------HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 234443322 2 2222110 1223468999999998875
No 199
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=81.81 E-value=5.6 Score=39.57 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=54.8
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-cc-----ccCCCCCC
Q 039378 429 RNRVLVFALYQLEADRLENMLRRS-----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VA-----ARGLDIPD 497 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~-----~~Gldi~~ 497 (600)
..++||.|+++.-+..++..+... ++.+..++|+.+....... +..+...|+|+|. .+ ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999988877664 7889999999987665543 4457778999994 22 23467778
Q ss_pred cCEEEE
Q 039378 498 VEVVIN 503 (600)
Q Consensus 498 v~~VI~ 503 (600)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888874
No 200
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=81.49 E-value=2.1 Score=48.16 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=14.4
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+++++.||+|+|||..
T Consensus 192 ~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCEEEECTTSCHHHH
T ss_pred CceEEEcCCCCCHHHH
Confidence 4799999999999985
No 201
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=81.36 E-value=7.2 Score=33.86 Aligned_cols=71 Identities=7% Similarity=0.119 Sum_probs=51.1
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH---h-cCCcEEEEchHHHHHHHHccCCCccceE
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITAL---R-SGVDIVIGTPGRLIDLIEMNVCHLSEVS 330 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~ 330 (600)
.++||.|+++.-+..+.+.+... ++.+..++|+.........+ . ....|+|+|.- + ...+++..++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gldi~~~~ 101 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----F-GRGMDIERVN 101 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----C-STTCCGGGCS
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----h-hcCcchhhCC
Confidence 34899999999999999998876 46778888887765543332 2 35789999942 1 2345677788
Q ss_pred EEEEc
Q 039378 331 FVVLD 335 (600)
Q Consensus 331 ~lViD 335 (600)
+||.-
T Consensus 102 ~Vi~~ 106 (172)
T 1t5i_A 102 IAFNY 106 (172)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 88763
No 202
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=80.78 E-value=2.2 Score=45.62 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=54.1
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHH--hcCCCCEEEecc
Q 039378 429 RNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLF--KEGTCPLMVATD 487 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F--~~g~~~vLvaT~ 487 (600)
.+.+||.++++.-+......|...|+.+..++|+++..++..++..+ ..+...||++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 57899999999999999999999999999999999999999888888 578899999996
No 203
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=80.71 E-value=2.2 Score=47.34 Aligned_cols=15 Identities=47% Similarity=0.567 Sum_probs=13.7
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+++.||||+|||..
T Consensus 523 ~~Ll~Gp~GtGKT~l 537 (758)
T 3pxi_A 523 SFIFLGPTGVGKTEL 537 (758)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 499999999999985
No 204
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=80.50 E-value=2.4 Score=46.85 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=14.3
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+.+|+.||+|+|||+.
T Consensus 512 ~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLL 527 (806)
T ss_dssp SCCEEESSTTSSHHHH
T ss_pred ceEEEecCCCCCchHH
Confidence 5699999999999974
No 205
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=80.18 E-value=3.1 Score=38.16 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=52.2
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-cc-----ccCCCCC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRS-----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VA-----ARGLDIP 496 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~-----~~Gldi~ 496 (600)
...++||.|+++.-+.++.+.+... ++.+..++|+.+...+...+ ....|+|+|. .+ ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3568999999999999988888764 67889999998876654433 2578999995 22 1345666
Q ss_pred CcCEEEE
Q 039378 497 DVEVVIN 503 (600)
Q Consensus 497 ~v~~VI~ 503 (600)
.+++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 7777764
No 206
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=79.21 E-value=33 Score=33.17 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=14.2
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
..+++.||.|+|||..
T Consensus 31 ~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 31 PITLVLGLRRTGKSSI 46 (357)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 5788999999999984
No 207
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=79.11 E-value=5.5 Score=36.29 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=48.7
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhC---CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-cc-----ccCCCCCCc
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRS---GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VA-----ARGLDIPDV 498 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~-----~~Gldi~~v 498 (600)
.+.++||.++++.-+.++...+... ++.+..++|+.+...+...+ . ....|+|+|. .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999999888764 67889999987755443332 2 3478999994 21 235677788
Q ss_pred CEEEE
Q 039378 499 EVVIN 503 (600)
Q Consensus 499 ~~VI~ 503 (600)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88774
No 208
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=78.90 E-value=5.4 Score=44.07 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=15.0
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
..++++.||+|+|||..
T Consensus 207 ~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAI 223 (758)
T ss_dssp SCEEEEECCTTSSHHHH
T ss_pred CCCeEEEcCCCCCHHHH
Confidence 45799999999999985
No 209
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=78.70 E-value=13 Score=35.61 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=14.0
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.++-+.+.+++|+|||..
T Consensus 97 ~~~~i~i~g~~G~GKTT~ 114 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTT 114 (295)
T ss_dssp SSEEEEEECCTTTTHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345566779999999985
No 210
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=78.55 E-value=1.9 Score=37.84 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=40.6
Q ss_pred cHHHHHHhhhhhcCCc--EEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHH
Q 039378 202 SPIQSHAWPFLLNGRD--FIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYD 272 (600)
Q Consensus 202 ~~~Q~~~i~~il~~~d--~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~ 272 (600)
.+-|..++..++...+ .++.+.-|++||...+- .+..+.+.. |.++.||+|+..-.....+
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a-~L~~~a~~~---------Gr~V~vLAp~~~s~~~l~~ 98 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVA-ELVMMAREQ---------GREVQIIAADRRSQMNMKQ 98 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHH-HHHHHHHHT---------TCCEEEECSTTHHHHHHSC
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHH-HHHHHHHhc---------CeEEEEEcCchHHHHHHHh
Confidence 4568888888876653 66779999999987433 333333322 3448999999766554433
No 211
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=77.99 E-value=2 Score=47.37 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.3
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+.+|+.||+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999984
No 212
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=77.97 E-value=1.9 Score=42.80 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=14.8
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.+.-+++.||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 445688999999999984
No 213
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=77.90 E-value=10 Score=35.44 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=52.2
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-----ccc--cCCCCC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-----VAA--RGLDIP 496 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-----~~~--~Gldi~ 496 (600)
.+.++||.++++.-+..+...|... +..+..++|+......... +..+ ..|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3568999999999999888887653 5678899998876554433 3334 78999994 121 357788
Q ss_pred CcCEEEE
Q 039378 497 DVEVVIN 503 (600)
Q Consensus 497 ~v~~VI~ 503 (600)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888774
No 214
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=77.68 E-value=4.3 Score=35.83 Aligned_cols=71 Identities=24% Similarity=0.318 Sum_probs=42.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHH---HHHh-cCCcEEEEchHHHHHHHHccCCCccce
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQI---TALR-SGVDIVIGTPGRLIDLIEMNVCHLSEV 329 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 329 (600)
+.++||.|+++.-+..+.+.+... ++.+..++|+....... ..+. ....|+|+|.- + . ..+++..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~----~-~Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV-A----A-RGLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcCh-h----h-cCCCcccC
Confidence 345899999999999999988875 46778888876544332 2222 35789999932 2 1 23456777
Q ss_pred EEEEE
Q 039378 330 SFVVL 334 (600)
Q Consensus 330 ~~lVi 334 (600)
++||.
T Consensus 116 ~~VI~ 120 (185)
T 2jgn_A 116 KHVIN 120 (185)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88775
No 215
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=77.59 E-value=5 Score=36.96 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=45.5
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-----cccc-CCCCCCc
Q 039378 429 RNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-----VAAR-GLDIPDV 498 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-----~~~~-Gldi~~v 498 (600)
+.++||.++++.-+..+.+.+... +..+..++|+..... ....+..+...|+|+|. .+.+ .+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 468999999999999888888654 567888888765433 23445567788999993 2333 3667778
Q ss_pred CEEEE
Q 039378 499 EVVIN 503 (600)
Q Consensus 499 ~~VI~ 503 (600)
++||.
T Consensus 175 ~~lVi 179 (237)
T 3bor_A 175 KMFVL 179 (237)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88774
No 216
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=77.54 E-value=6.5 Score=40.20 Aligned_cols=72 Identities=25% Similarity=0.368 Sum_probs=54.3
Q ss_pred cCCCeEEEEEeehhcHHHHHHHHHhC-CC---eEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-ccc-----cCCCCC
Q 039378 427 SQRNRVLVFALYQLEADRLENMLRRS-GW---KVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAA-----RGLDIP 496 (600)
Q Consensus 427 ~~~~~~lVF~~s~~~~~~l~~~L~~~-~~---~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~-----~Gldi~ 496 (600)
....++||.|+++.-+......+... +. .+..+||+....++..... ...|+|+|. .+. ..+...
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~ 124 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLE 124 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTT
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchh
Confidence 45779999999999999888888765 55 8999999998887655443 357999993 332 246677
Q ss_pred CcCEEEE
Q 039378 497 DVEVVIN 503 (600)
Q Consensus 497 ~v~~VI~ 503 (600)
.+++||.
T Consensus 125 ~~~~vIi 131 (494)
T 1wp9_A 125 DVSLIVF 131 (494)
T ss_dssp SCSEEEE
T ss_pred hceEEEE
Confidence 7888774
No 217
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=77.38 E-value=2.1 Score=39.54 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=29.8
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
.|.-+++.|++|+|||... +-++..+... +..++++.-. .-..++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~-~~~~~~~~~~----------~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFS-QQFLWNGLKM----------GEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHH-HHHHHHHHHT----------TCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHhc----------CCeEEEEEcc-CCHHHHHHHHHHc
Confidence 4566889999999999853 3233333322 1225666533 3345666655543
No 218
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=77.37 E-value=3.2 Score=42.12 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=18.2
Q ss_pred HHHHhhhhh--cCCcEEEEecCCCCchhH
Q 039378 205 QSHAWPFLL--NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 205 Q~~~i~~il--~~~d~i~~a~TGsGKT~~ 231 (600)
+..++..++ .+.-+++.||||||||..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 444444433 334578899999999984
No 219
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=77.14 E-value=6.1 Score=35.21 Aligned_cols=72 Identities=26% Similarity=0.250 Sum_probs=52.5
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-c----cc-cCCCCCCcC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRS--GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-V----AA-RGLDIPDVE 499 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~----~~-~Gldi~~v~ 499 (600)
.+.++||.|+++.-+..+.+.+... ++.+..++|+.+...+...+. ....|+|+|. . +. ..+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3568999999999999999988776 467889999887655443332 2477999994 1 22 346777888
Q ss_pred EEEE
Q 039378 500 VVIN 503 (600)
Q Consensus 500 ~VI~ 503 (600)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 220
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=77.13 E-value=1.3 Score=41.83 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=16.5
Q ss_pred hhcCCcEEEEecCCCCchhH
Q 039378 212 LLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 212 il~~~d~i~~a~TGsGKT~~ 231 (600)
+..|.-+++.||||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 44566788999999999984
No 221
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=75.75 E-value=12 Score=37.41 Aligned_cols=71 Identities=27% Similarity=0.366 Sum_probs=52.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH---h-cCCcEEEEchHHHHHHHHccCCCccce
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITAL---R-SGVDIVIGTPGRLIDLIEMNVCHLSEV 329 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 329 (600)
+.++||.|+++.-+..+++.+... ++.+..++|+.........+ . ...+|+|+|. .+. ..+++..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCcccC
Confidence 456899999999999999998876 36778888887765443332 2 3578999995 333 35578888
Q ss_pred EEEEE
Q 039378 330 SFVVL 334 (600)
Q Consensus 330 ~~lVi 334 (600)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88885
No 222
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=75.71 E-value=2.3 Score=44.56 Aligned_cols=31 Identities=19% Similarity=0.027 Sum_probs=22.2
Q ss_pred CcHHHHHHhhh-hhcCCcEEEEecCCCCchhH
Q 039378 201 PSPIQSHAWPF-LLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 201 ~~~~Q~~~i~~-il~~~d~i~~a~TGsGKT~~ 231 (600)
+++.+...+.. +..|..++++||||||||..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 44445555544 34677899999999999984
No 223
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=75.42 E-value=7.4 Score=34.62 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=50.7
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-c----ccc-CCCCCC
Q 039378 429 RNRVLVFALYQLEADRLENMLRRS-----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-V----AAR-GLDIPD 497 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~----~~~-Gldi~~ 497 (600)
..++||.++++.-+..+.+.+... +..+..++|+.+....... + .+...|+|+|. . +.+ .+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999998888877653 5788999999876544322 2 35678999995 2 222 346777
Q ss_pred cCEEEE
Q 039378 498 VEVVIN 503 (600)
Q Consensus 498 v~~VI~ 503 (600)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 224
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=74.78 E-value=3.5 Score=40.19 Aligned_cols=18 Identities=28% Similarity=0.019 Sum_probs=14.8
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+++.|++|+|||..
T Consensus 97 ~g~i~~i~G~~gsGKT~l 114 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQI 114 (322)
T ss_dssp TTEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345688999999999975
No 225
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=74.45 E-value=2.8 Score=37.99 Aligned_cols=29 Identities=28% Similarity=0.233 Sum_probs=23.9
Q ss_pred HHHHHHhhhhhcCCcEEEEecCCCCchhH
Q 039378 203 PIQSHAWPFLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 203 ~~Q~~~i~~il~~~d~i~~a~TGsGKT~~ 231 (600)
.-|..++..+..|.-+.+.+|.|+|||+.
T Consensus 10 ~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 10 LGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp HHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred HhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 34667777788888888999999999984
No 226
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=74.32 E-value=5.6 Score=46.38 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=31.9
Q ss_pred EEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 219 IGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 219 i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
+|.|..|||||.+ ++.-+.+++.... .+.++|+|+|.. +..++.+.+....
T Consensus 5 lV~agAGSGKT~~-l~~ri~~ll~~~~-------~~~~il~lVP~q-~TFt~~~rl~~~l 55 (1166)
T 3u4q_B 5 FLVGRSGSGKTKL-IINSIQDELRRAP-------FGKPIIFLVPDQ-MTFLMEYELAKTP 55 (1166)
T ss_dssp EEEECTTSSHHHH-HHHHHHHHHHHCT-------TSSCEEEECCGG-GHHHHHHHHTCCS
T ss_pred EEEeCCCCChHHH-HHHHHHHHHHhCC-------CCCcEEEEecCc-ccHHHHHHHHHhh
Confidence 6779999999997 3444445444321 134589999975 4455555555443
No 227
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=74.18 E-value=1.9 Score=38.68 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=14.3
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|+-+.+.||+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456788999999999984
No 228
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=73.87 E-value=6 Score=40.86 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=16.7
Q ss_pred cEEEEecCCCCchhHhhHHHHHHHHh
Q 039378 217 DFIGIAKTGSGKTIAFGVPAMMHVLS 242 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~lp~l~~~~~ 242 (600)
-+.+.|++|+|||.. +-.+..++.
T Consensus 295 VI~LVGpNGSGKTTL--l~~LAgll~ 318 (503)
T 2yhs_A 295 VILMVGVNGVGKTTT--IGKLARQFE 318 (503)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred EEEEECCCcccHHHH--HHHHHHHhh
Confidence 367889999999984 334444444
No 229
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=72.81 E-value=3 Score=38.64 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=14.3
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
|.-++++|++|+|||..
T Consensus 30 G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TCEEEEECCTTSSHHHH
T ss_pred CeEEEEEeCCCCCHHHH
Confidence 45688999999999974
No 230
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=71.91 E-value=1.9 Score=37.77 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.3
Q ss_pred hcCCcEEEEecCCCCchhH
Q 039378 213 LNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~ 231 (600)
..+..+++.|++|||||.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCCEEEECSTTSSHHHH
T ss_pred ccCCeEEEEeCCCCCHHHH
Confidence 4567799999999999985
No 231
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=71.73 E-value=4.1 Score=37.10 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.1
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+++.||+|+|||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 456688899999999975
No 232
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=71.42 E-value=42 Score=28.95 Aligned_cols=80 Identities=19% Similarity=0.306 Sum_probs=57.7
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecccccc
Q 039378 412 SRDQRLLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAAR 491 (600)
Q Consensus 412 ~~~~~l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~~ 491 (600)
.....+...+.. .....+.+-|.|.+...+..+...|...|+++..+.++.. .| .-.|.|+|--.+.
T Consensus 45 ~e~~~i~~~I~~-~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~v~t~~~~K 111 (174)
T 3dmn_A 45 AGVDQVVDQLAM-NDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVIVVPSFLAK 111 (174)
T ss_dssp HHHHHHHHHHHH-HHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEEEEEGGGCT
T ss_pred HHHHHHHHHHHH-hccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeEEEEccccC
Confidence 334445555554 2334678999999999999999999999998877765432 12 2369999999999
Q ss_pred CCCCCCcCEEEEcCCC
Q 039378 492 GLDIPDVEVVINYSFP 507 (600)
Q Consensus 492 Gldi~~v~~VI~~d~p 507 (600)
|+-+ ++||.+++.
T Consensus 112 GlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 112 GLEF---DAVIVWNAN 124 (174)
T ss_dssp TCCE---EEEEEETCB
T ss_pred CcCC---CEEEEecCC
Confidence 9876 677777654
No 233
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=71.05 E-value=6.5 Score=35.62 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=49.5
Q ss_pred HHHHHHHHhh-cCCCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-cc-
Q 039378 417 LLALLEKYHK-SQRNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VA- 489 (600)
Q Consensus 417 l~~~l~~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~- 489 (600)
++.++..+.. ..+.++||.++++.-+.++.+.+... ++.+..++|+.+...+... +. ...|+|+|. .+
T Consensus 69 ~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~ 143 (224)
T 1qde_A 69 SIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVF 143 (224)
T ss_dssp HHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHH
T ss_pred HHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHH
Confidence 4444444432 23458999999999998888877653 6788999998875544332 22 378999994 21
Q ss_pred ----ccCCCCCCcCEEEE
Q 039378 490 ----ARGLDIPDVEVVIN 503 (600)
Q Consensus 490 ----~~Gldi~~v~~VI~ 503 (600)
...+++..+++||.
T Consensus 144 ~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 144 DNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp HHHHTTSSCCTTCCEEEE
T ss_pred HHHHhCCcchhhCcEEEE
Confidence 23566777787774
No 234
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=70.77 E-value=9.5 Score=35.33 Aligned_cols=71 Identities=14% Similarity=0.194 Sum_probs=50.8
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-ccc-----cCCCCCCc
Q 039378 429 RNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAA-----RGLDIPDV 498 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~-----~Gldi~~v 498 (600)
..++||.|+++.-+..+...+... ++.+..++|+.+.......+ .....|+|+|. .+. ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 458999999999998888777643 57788999988765544332 34578999994 221 23577788
Q ss_pred CEEEE
Q 039378 499 EVVIN 503 (600)
Q Consensus 499 ~~VI~ 503 (600)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 235
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=70.76 E-value=16 Score=36.43 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=52.3
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH---h-cCCcEEEEchHHHHHHHHccCCCccceE
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITAL---R-SGVDIVIGTPGRLIDLIEMNVCHLSEVS 330 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~ 330 (600)
.++||.|+++.-+..+++.+...+ +.+..++|+.........+ . ...+|+|+|. .+ ...+++..++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~~ 336 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKEG----HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQVS 336 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTT----CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhCC----CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccCCC
Confidence 468999999999999999998863 6678888887765554332 2 3478999995 22 3456788899
Q ss_pred EEEE
Q 039378 331 FVVL 334 (600)
Q Consensus 331 ~lVi 334 (600)
+||.
T Consensus 337 ~Vi~ 340 (412)
T 3fht_A 337 VVIN 340 (412)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9884
No 236
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=70.68 E-value=2.2 Score=42.72 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=15.7
Q ss_pred hcCCcEEEEecCCCCchhH
Q 039378 213 LNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~ 231 (600)
..|..+++.||||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3456788999999999984
No 237
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=70.53 E-value=2.4 Score=42.17 Aligned_cols=20 Identities=35% Similarity=0.363 Sum_probs=17.0
Q ss_pred hhcCCcEEEEecCCCCchhH
Q 039378 212 LLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 212 il~~~d~i~~a~TGsGKT~~ 231 (600)
+..|..++++||||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44677899999999999984
No 238
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=70.24 E-value=32 Score=36.14 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=54.3
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH---h-cCCcEEEEchHHHHHHHHccCCCccce
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITAL---R-SGVDIVIGTPGRLIDLIEMNVCHLSEV 329 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 329 (600)
+.++||.|+++.-+..+++.+..... .++.+..++|+.........+ . ...+|+|||. .+ ...+++..+
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~GiDip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh-hcCCCcccC
Confidence 44689999999999999999988643 246778888887765543332 2 4589999995 22 235677888
Q ss_pred EEEEEcc
Q 039378 330 SFVVLDE 336 (600)
Q Consensus 330 ~~lViDE 336 (600)
++||.-.
T Consensus 412 ~~VI~~~ 418 (563)
T 3i5x_A 412 HEVLQIG 418 (563)
T ss_dssp CEEEEES
T ss_pred CEEEEEC
Confidence 8888543
No 239
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=70.16 E-value=6.2 Score=45.38 Aligned_cols=74 Identities=12% Similarity=0.233 Sum_probs=57.2
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhC----CC----eEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-ccccCCC-CCC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRS----GW----KVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAARGLD-IPD 497 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~----~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~~Gld-i~~ 497 (600)
.+.++||.++++.-+.+++..+... ++ .+..+||+++...+....+.+.. ..|+|+|+ .+..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3578999999999998888877643 56 89999999999888888887777 88999995 3322222 567
Q ss_pred cCEEEE
Q 039378 498 VEVVIN 503 (600)
Q Consensus 498 v~~VI~ 503 (600)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888774
No 240
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=69.78 E-value=2.3 Score=38.14 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=15.6
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.+..+++.|++|||||..
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 456789999999999985
No 241
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=69.63 E-value=15 Score=35.24 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=50.6
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH---h-cCCcEEEEchHHHHHHHHccCCCccceEE
Q 039378 256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITAL---R-SGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331 (600)
Q Consensus 256 ~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~ 331 (600)
++||.|+++.-+..+.+.+... ++.+..++|+.....+...+ . ...+|+|+|. .+ ...+++..+++
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va-~~Gidi~~v~~ 99 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VA-ARGLDIPQVDL 99 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TT-TCSTTCCCCSE
T ss_pred CEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hh-hcCccccceeE
Confidence 4799999999999888888765 47788899987766554333 2 3478999994 22 23556788888
Q ss_pred EEE
Q 039378 332 VVL 334 (600)
Q Consensus 332 lVi 334 (600)
||.
T Consensus 100 VI~ 102 (300)
T 3i32_A 100 VVH 102 (300)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 242
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=69.23 E-value=18 Score=35.78 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=54.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHH---Hh-cCCcEEEEchHHHHHHHHccCCCccce
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITA---LR-SGVDIVIGTPGRLIDLIEMNVCHLSEV 329 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 329 (600)
+.++||.|+++.-+..+++.+...+ +.+..++|+......... +. ...+|+|+|. .+ ...+++..+
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSEG----HEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT----CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcC----CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCcccC
Confidence 3568999999999999999998764 667788888776544333 22 3478999995 22 345678889
Q ss_pred EEEEEcccc
Q 039378 330 SFVVLDEAD 338 (600)
Q Consensus 330 ~~lViDEah 338 (600)
++||.-...
T Consensus 313 ~~Vi~~~~p 321 (395)
T 3pey_A 313 SMVVNYDLP 321 (395)
T ss_dssp EEEEESSCC
T ss_pred CEEEEcCCC
Confidence 999875544
No 243
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=69.09 E-value=5.4 Score=38.53 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.3
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+-+++.+++|+|||..
T Consensus 105 ~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTS 120 (306)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEEcCCCChHHHH
Confidence 4467889999999985
No 244
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=69.08 E-value=2.4 Score=37.31 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=15.1
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|+-++++||+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999984
No 245
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=68.93 E-value=2.9 Score=39.36 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=16.1
Q ss_pred hcCCcEEEEecCCCCchhH
Q 039378 213 LNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~ 231 (600)
..+..+++.||+|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3457899999999999984
No 246
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=68.27 E-value=2 Score=37.46 Aligned_cols=17 Identities=24% Similarity=0.135 Sum_probs=14.3
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+.-++++|++|||||..
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34588999999999985
No 247
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=68.27 E-value=4 Score=40.51 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=15.5
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
....+++.||+|+|||..
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 346799999999999985
No 248
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=68.20 E-value=3.7 Score=42.74 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=21.1
Q ss_pred HHHhhhhhcCCcEEEEecCCCCchhH
Q 039378 206 SHAWPFLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 206 ~~~i~~il~~~d~i~~a~TGsGKT~~ 231 (600)
..++..+..+.++++.||+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 44555566788999999999999984
No 249
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=67.91 E-value=2.3 Score=41.62 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.7
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
.-++++||||+|||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3578899999999985
No 250
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=67.74 E-value=5.5 Score=47.70 Aligned_cols=89 Identities=13% Similarity=0.221 Sum_probs=52.3
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChH
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQ 295 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 295 (600)
+-+.+.+|.|||||.. +++++....+. +..|+++.+-.+|.... +..++-.+.
T Consensus 1432 ~~iei~g~~~sGkttl-~~~~~a~~~~~----------g~~~~~i~~e~~~~~~~---~~~~Gv~~~------------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTL-TLQVIAAAQRE----------GKTCAFIDAEHALDPIY---ARKLGVDID------------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHH-HHHHHHHHHHT----------TCCEEEECTTSCCCHHH---HHHTTCCGG-------------
T ss_pred CEEEEEcCCCCCHHHH-HHHHHHHHHhc----------CCeEEEEecCCCCCHHH---HHHcCCCHH-------------
Confidence 4588899999999987 45555554443 33478888766664443 555553221
Q ss_pred HHHHHHhcCCcEEEEchHHH---HHHHHccCCCccceEEEEEcccchhhc
Q 039378 296 PQITALRSGVDIVIGTPGRL---IDLIEMNVCHLSEVSFVVLDEADRMLD 342 (600)
Q Consensus 296 ~~~~~l~~~~~Iiv~Tp~~l---~~~l~~~~~~l~~~~~lViDEah~l~~ 342 (600)
++++.-|+.- +..+.. .+.-..+++||||-+-.+..
T Consensus 1485 ----------~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 ----------NLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ----------GCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCC
T ss_pred ----------HeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCc
Confidence 3445555322 222211 11123467999999988764
No 251
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=67.70 E-value=6.5 Score=47.84 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=29.7
Q ss_pred hhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHH
Q 039378 212 LLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIY 271 (600)
Q Consensus 212 il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~ 271 (600)
+-.++.+++.+++|+|||...+. ++...... +.+++++. ..++..+++
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~-~~~ea~k~----------Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQ-VIAAAQRE----------GKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHH-HHHHHHTT----------TCCEEEEC-TTSCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHH-HHHHHHHc----------CCeEEEEE-ccccHHHHH
Confidence 44567899999999999986433 33333332 22356664 345555655
No 252
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=67.70 E-value=2.1 Score=38.56 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=16.6
Q ss_pred hhcCCcEEEEecCCCCchhH
Q 039378 212 LLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 212 il~~~d~i~~a~TGsGKT~~ 231 (600)
+..+.-++++||+|||||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 44567789999999999984
No 253
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=67.57 E-value=6.2 Score=41.51 Aligned_cols=71 Identities=17% Similarity=0.318 Sum_probs=47.7
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-ccc----cC-C-CCCC
Q 039378 429 RNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAA----RG-L-DIPD 497 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~----~G-l-di~~ 497 (600)
..++||.|+++.-+......+... ++.+..+||+.+...+...+. ....|+|+|. .+. .| + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999888887777654 899999999987655433222 2367999994 222 22 4 6778
Q ss_pred cCEEEE
Q 039378 498 VEVVIN 503 (600)
Q Consensus 498 v~~VI~ 503 (600)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888874
No 254
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=67.57 E-value=28 Score=37.55 Aligned_cols=77 Identities=26% Similarity=0.415 Sum_probs=57.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHH---Hh-cCCcEEEEchHHHHHHHHccCCCccce
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITA---LR-SGVDIVIGTPGRLIDLIEMNVCHLSEV 329 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 329 (600)
+.++||.|+|+.-+..+.+.+...+ +.+..++|+......... ++ ...+|+|||. .+ ...+.+..+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~g----i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEIG----IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcC----CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCCC
Confidence 3468999999999999999988864 677777877665544333 23 3489999995 22 345678899
Q ss_pred EEEEEcccchh
Q 039378 330 SFVVLDEADRM 340 (600)
Q Consensus 330 ~~lViDEah~l 340 (600)
++||+-+++..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999998764
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=67.51 E-value=3 Score=36.99 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.9
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999984
No 256
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=67.14 E-value=35 Score=34.49 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=13.7
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+.-+++.++.|+|||..
T Consensus 98 ~~vi~i~G~~GsGKTT~ 114 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTT 114 (425)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44567779999999985
No 257
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=67.13 E-value=27 Score=34.55 Aligned_cols=70 Identities=11% Similarity=0.195 Sum_probs=51.1
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHH---Hh-cCCcEEEEchHHHHHHHHccCCCccceE
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITA---LR-SGVDIVIGTPGRLIDLIEMNVCHLSEVS 330 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~ 330 (600)
.++||.|+++.-+..+++.+...+ +.+..++|+......... +. ....|+|+|. .+ ...+++..++
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~~~ 328 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDLG----YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQAVN 328 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTTEE
T ss_pred CcEEEEEecHHHHHHHHHHHHhcC----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc-ccCCCccCCC
Confidence 458999999999999999998874 667788888776544332 22 3478999994 22 2356788888
Q ss_pred EEEE
Q 039378 331 FVVL 334 (600)
Q Consensus 331 ~lVi 334 (600)
+||.
T Consensus 329 ~Vi~ 332 (400)
T 1s2m_A 329 VVIN 332 (400)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=67.04 E-value=2.1 Score=37.08 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=12.5
Q ss_pred EEEEecCCCCchhH
Q 039378 218 FIGIAKTGSGKTIA 231 (600)
Q Consensus 218 ~i~~a~TGsGKT~~ 231 (600)
++++|++|||||..
T Consensus 4 I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 4 ILITGMPGSGKSEF 17 (179)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999985
No 259
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=66.56 E-value=2.8 Score=37.57 Aligned_cols=18 Identities=22% Similarity=0.339 Sum_probs=15.0
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.++-+++.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456689999999999874
No 260
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=66.56 E-value=2.8 Score=36.81 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=15.1
Q ss_pred CCcEEEEecCCCCchhHh
Q 039378 215 GRDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~ 232 (600)
...+++.|++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456889999999999853
No 261
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=66.51 E-value=4 Score=41.06 Aligned_cols=42 Identities=19% Similarity=0.435 Sum_probs=27.2
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHH
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTREL 266 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~L 266 (600)
.+.++++.|+||+|||...-. ++..+... +.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~~----------~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYMQ----------GSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHTT----------TCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHHC----------CCEEEEEeCCcCH
Confidence 456899999999999985332 23332221 3446777787654
No 262
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=66.51 E-value=2.6 Score=40.80 Aligned_cols=15 Identities=27% Similarity=0.149 Sum_probs=12.9
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
-++++||||+|||..
T Consensus 5 ~i~i~GptgsGKt~l 19 (322)
T 3exa_A 5 LVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCcCCHHHH
Confidence 467889999999985
No 263
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=66.45 E-value=21 Score=35.60 Aligned_cols=69 Identities=13% Similarity=0.245 Sum_probs=51.0
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH---h-cCCcEEEEchHHHHHHHHccCCCccceEE
Q 039378 256 LCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITAL---R-SGVDIVIGTPGRLIDLIEMNVCHLSEVSF 331 (600)
Q Consensus 256 ~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~ 331 (600)
++||.|+++.-+..+.+.+...+ +.+..++|+.........+ . ....|+|+|.- + ...+++..+++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~~----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~Gidi~~v~~ 347 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREAN----FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV-----W-ARGLDVPQVSL 347 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTT----CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG-----G-SSSCCCTTEEE
T ss_pred cEEEEEcCHHHHHHHHHHHHhCC----CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh-----h-hCcCCcccCCE
Confidence 58999999999999999988763 6678888887765443332 2 34789999952 2 34567888999
Q ss_pred EEE
Q 039378 332 VVL 334 (600)
Q Consensus 332 lVi 334 (600)
||.
T Consensus 348 Vi~ 350 (410)
T 2j0s_A 348 IIN 350 (410)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 264
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=66.42 E-value=2.6 Score=40.70 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=12.5
Q ss_pred EEEEecCCCCchhH
Q 039378 218 FIGIAKTGSGKTIA 231 (600)
Q Consensus 218 ~i~~a~TGsGKT~~ 231 (600)
++++||||||||..
T Consensus 13 i~i~GptgsGKt~l 26 (316)
T 3foz_A 13 IFLMGPTASGKTAL 26 (316)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 67899999999985
No 265
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=66.15 E-value=3.4 Score=36.92 Aligned_cols=18 Identities=39% Similarity=0.420 Sum_probs=15.0
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+.+.||+|||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456678889999999984
No 266
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=65.07 E-value=2.9 Score=39.24 Aligned_cols=14 Identities=36% Similarity=0.190 Sum_probs=12.5
Q ss_pred EEEEecCCCCchhH
Q 039378 218 FIGIAKTGSGKTIA 231 (600)
Q Consensus 218 ~i~~a~TGsGKT~~ 231 (600)
++++||||||||..
T Consensus 4 i~I~G~~GSGKSTl 17 (253)
T 2ze6_A 4 HLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCcCHHHH
Confidence 67899999999985
No 267
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=64.88 E-value=3.2 Score=37.45 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=14.7
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+++.||+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 355578899999999984
No 268
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=64.80 E-value=23 Score=34.45 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=54.8
Q ss_pred HHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-ccc---
Q 039378 419 ALLEKYHKSQRNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAA--- 490 (600)
Q Consensus 419 ~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~--- 490 (600)
.++..+....+.++||.|+++.-+..+++.+... ++.+..++|+.........+. ...|+|+|. .+.
T Consensus 64 ~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~ 138 (367)
T 1hv8_A 64 PLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHI 138 (367)
T ss_dssp HHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHH
T ss_pred HHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHH
Confidence 3444433334668999999999988888887653 678899999887665544332 467999994 221
Q ss_pred --cCCCCCCcCEEEE
Q 039378 491 --RGLDIPDVEVVIN 503 (600)
Q Consensus 491 --~Gldi~~v~~VI~ 503 (600)
..+++..+++||.
T Consensus 139 ~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 139 NRGTLNLKNVKYFIL 153 (367)
T ss_dssp HTTCSCTTSCCEEEE
T ss_pred HcCCcccccCCEEEE
Confidence 2356777888774
No 269
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=64.75 E-value=2.7 Score=37.11 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=15.1
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+++.||+|||||..
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456688999999999984
No 270
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=64.59 E-value=4.3 Score=32.19 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=32.9
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKA 464 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 464 (600)
...+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3568999999988899999999999999999999865
No 271
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=64.47 E-value=9.9 Score=44.33 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=39.2
Q ss_pred cEEEEecCCCCchhHhhHHHHHHHHhcccCcc-CCCCCCceEEEEcccHHHHHHHHHHHHHh
Q 039378 217 DFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKA-VGKRVNPLCLVLSPTRELADQIYDVLNDA 277 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~-~~~~~~~~~liv~Ptr~La~q~~~~~~~~ 277 (600)
..+|.|.-|||||.+-.--++..++....... ........+|+|+=|+..|.++.+++...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 44999999999998743333333333210000 00112346899999999999999988764
No 272
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=64.41 E-value=4.9 Score=31.26 Aligned_cols=36 Identities=11% Similarity=0.187 Sum_probs=32.4
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCC
Q 039378 429 RNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKA 464 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 464 (600)
..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 568999999998899999999999999999999864
No 273
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=64.35 E-value=2.1 Score=41.87 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=19.1
Q ss_pred HhhhhhcCCcEEEEecCCCCchhH
Q 039378 208 AWPFLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d~i~~a~TGsGKT~~ 231 (600)
+...+..++++++.||+|+|||..
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHH
Confidence 334455678999999999999984
No 274
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=64.33 E-value=21 Score=36.25 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=50.8
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH---h-cCCcEEEEchHHHHHHHHccCCCccceEEE
Q 039378 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITAL---R-SGVDIVIGTPGRLIDLIEMNVCHLSEVSFV 332 (600)
Q Consensus 257 ~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~l 332 (600)
+||.|+++.-|..+.+.+... ++.+..++|+.........+ + ....|+|||. .+ ...+++..+++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~-~rGlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VA-SRGLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GG-TSSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hh-hCCCCcccCCEE
Confidence 799999999999999998876 46778888887765544333 2 3478999996 22 345678888888
Q ss_pred EE
Q 039378 333 VL 334 (600)
Q Consensus 333 Vi 334 (600)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 275
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=64.22 E-value=49 Score=34.91 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=54.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH---h-cCCcEEEEchHHHHHHHHccCCCccce
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITAL---R-SGVDIVIGTPGRLIDLIEMNVCHLSEV 329 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 329 (600)
+.++||.|+|+.-+..+++.+..... .++.+..++|+.........+ . ...+|+|||. .+ ...+++..+
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCcccC
Confidence 34589999999999999999988643 246778888887765543332 2 3588999995 22 235677888
Q ss_pred EEEEEccc
Q 039378 330 SFVVLDEA 337 (600)
Q Consensus 330 ~~lViDEa 337 (600)
++||.-..
T Consensus 361 ~~VI~~~~ 368 (579)
T 3sqw_A 361 HEVLQIGV 368 (579)
T ss_dssp CEEEEESC
T ss_pred CEEEEcCC
Confidence 88886543
No 276
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=64.15 E-value=4.8 Score=31.48 Aligned_cols=37 Identities=11% Similarity=0.209 Sum_probs=32.6
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKA 464 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 464 (600)
...+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3568999999998899999999999999999999864
No 277
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=63.97 E-value=5.7 Score=35.94 Aligned_cols=71 Identities=8% Similarity=0.085 Sum_probs=48.3
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhC--------CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-----cccc-CCC
Q 039378 429 RNRVLVFALYQLEADRLENMLRRS--------GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-----VAAR-GLD 494 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~--------~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-----~~~~-Gld 494 (600)
+.++||.++++.-+..+.+.+... ++.+..++|+.+...... .+ .+...|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999998888776543 578889999876443221 11 24567999994 2222 356
Q ss_pred CCCcCEEEE
Q 039378 495 IPDVEVVIN 503 (600)
Q Consensus 495 i~~v~~VI~ 503 (600)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 677777764
No 278
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=63.96 E-value=9.6 Score=38.79 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=38.8
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHh-cCCcEEEEch
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALR-SGVDIVIGTP 312 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~-~~~~Iiv~Tp 312 (600)
.++||+||++.-+..+++.+... ++++..++|+ ........+. ...+|+|+|.
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRK-TFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTT-THHHHTTHHHHSCCSEEEECG
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCc-cHHHHHHhhcCCCCeEEEECc
Confidence 35899999999999999999887 4677777776 3333333333 4589999995
No 279
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=63.83 E-value=3.8 Score=35.45 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.6
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+..+++.|++|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45688999999999984
No 280
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=63.36 E-value=4.1 Score=37.13 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=15.4
Q ss_pred hcCCcEEEEecCCCCchhH
Q 039378 213 LNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~ 231 (600)
..|.-+.+.||+|+|||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566788999999999984
No 281
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=63.21 E-value=2.8 Score=36.89 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=14.5
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+.-+++.|++|||||..
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999985
No 282
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=63.17 E-value=4.4 Score=34.36 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=15.8
Q ss_pred EEEEecCCCCchhHhhHHHHHHHH
Q 039378 218 FIGIAKTGSGKTIAFGVPAMMHVL 241 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~lp~l~~~~ 241 (600)
.++.+|+|+|||.. +-++..++
T Consensus 26 ~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHHH
Confidence 56789999999985 44454444
No 283
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=63.08 E-value=3.5 Score=36.83 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=15.6
Q ss_pred hcCCcEEEEecCCCCchhH
Q 039378 213 LNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~ 231 (600)
..|.-+++.||+|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3466688999999999984
No 284
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=63.06 E-value=25 Score=36.44 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=13.1
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+++++++|+|||..
T Consensus 103 vI~ivG~~GvGKTTl 117 (504)
T 2j37_W 103 VIMFVGLQGSGKTTT 117 (504)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577889999999986
No 285
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=62.94 E-value=2.8 Score=36.88 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=14.9
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|..+++.|++|||||..
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345688999999999985
No 286
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=62.62 E-value=7.9 Score=37.03 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=15.1
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
...+++.||+|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999985
No 287
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=62.55 E-value=4 Score=37.25 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=15.5
Q ss_pred hhcCCcEEEEecCCCCchhH
Q 039378 212 LLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 212 il~~~d~i~~a~TGsGKT~~ 231 (600)
+..|.-+++.||.|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44566788999999999984
No 288
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=62.08 E-value=4.8 Score=36.26 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=17.2
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHh
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLS 242 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~ 242 (600)
|.-+.+.||+|||||.. +-++..++.
T Consensus 22 g~~v~I~G~sGsGKSTl--~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL--SNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHH--HHHHHHHHh
Confidence 34567889999999984 333444443
No 289
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=62.04 E-value=10 Score=38.73 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=44.3
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHh-cCCcEEEEchHHHHHHHHccCCCccceEEE
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALR-SGVDIVIGTPGRLIDLIEMNVCHLSEVSFV 332 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~l 332 (600)
+.++||+||++.-+..+++.+... ++.+..++|. ........+. ...+|+|||. .+. ..+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~-----v~e-~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILATD-----IAE-MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEESS-----STT-CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEECC-----hhh-eeeccC-ceEE
Confidence 346899999999999999999886 3667777773 3333334443 3479999995 222 244566 7777
Q ss_pred E
Q 039378 333 V 333 (600)
Q Consensus 333 V 333 (600)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 290
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=61.98 E-value=5.6 Score=38.58 Aligned_cols=52 Identities=13% Similarity=-0.016 Sum_probs=29.1
Q ss_pred hcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHH
Q 039378 213 LNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLND 276 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~ 276 (600)
..|.=++++|++|+|||.. ++-+...+... +..+++++.- .-..|+..++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl-~l~ia~~~a~~----------g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAF-ALKQAKNMSDN----------DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp CTTCEEEEECCTTSSHHHH-HHHHHHHHHTT----------TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHH-HHHHHHHHHHc----------CCeEEEEECC-CCHHHHHHHHHH
Confidence 3455688999999999974 33333333322 1236776532 333455555443
No 291
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=61.89 E-value=4.4 Score=35.70 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.2
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+-+.+.||+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3467889999999984
No 292
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=61.78 E-value=3 Score=36.00 Aligned_cols=15 Identities=13% Similarity=-0.199 Sum_probs=13.0
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
-+++.|++|||||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999985
No 293
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=61.75 E-value=4 Score=35.91 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.3
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.+..+++.|++|||||.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 355789999999999985
No 294
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=61.71 E-value=3 Score=36.31 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=12.9
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
-++++|++|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 367899999999985
No 295
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=61.69 E-value=4.1 Score=36.52 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|+-++++||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 566788999999999984
No 296
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=61.61 E-value=3.5 Score=40.44 Aligned_cols=20 Identities=40% Similarity=0.504 Sum_probs=16.8
Q ss_pred hhcCCcEEEEecCCCCchhH
Q 039378 212 LLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 212 il~~~d~i~~a~TGsGKT~~ 231 (600)
+..|..+++.||||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34678899999999999983
No 297
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=61.55 E-value=5.8 Score=30.38 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=31.4
Q ss_pred CeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCC
Q 039378 430 NRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKA 464 (600)
Q Consensus 430 ~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 464 (600)
.+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988889999999999999888889875
No 298
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=61.27 E-value=3.1 Score=39.91 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=15.1
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
.+.+++.||+|+|||..
T Consensus 54 ~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 46799999999999985
No 299
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.10 E-value=4.6 Score=40.85 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=29.8
Q ss_pred cccccccCCCCHHHHHhhc-----CCCCCcHHHHHHhhhhhcCCcEEEEecCCCCchhH
Q 039378 178 ALKSFTESKLPDDVLGCCK-----NFKNPSPIQSHAWPFLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 178 ~~~~~~~~~l~~~l~~~~~-----~~~~~~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~ 231 (600)
+--+|.+.+=-..+...+. .+.+|--++...+++ .+.+|+.||+|+|||+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~---prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKP---PKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCC---CSEEEEESSTTTTHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC---CCCCceECCCCchHHHH
Confidence 3456777765555554443 122333333333221 36799999999999985
No 300
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=61.05 E-value=3.7 Score=39.95 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=13.3
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.++++||||||||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999985
No 301
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=61.03 E-value=4.6 Score=38.97 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=15.6
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
....+++.||+|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 456899999999999985
No 302
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=60.89 E-value=6 Score=31.08 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=31.8
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCC
Q 039378 429 RNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKA 464 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 464 (600)
..+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 568999999988889999999999999888888863
No 303
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=60.83 E-value=4.6 Score=35.31 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=16.1
Q ss_pred cEEEEecCCCCchhHhhHHHHHHHH
Q 039378 217 DFIGIAKTGSGKTIAFGVPAMMHVL 241 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~lp~l~~~~ 241 (600)
-.++.+|+|+|||.. +-++..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 357789999999984 34454444
No 304
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=60.43 E-value=11 Score=39.36 Aligned_cols=71 Identities=14% Similarity=0.317 Sum_probs=50.4
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-ccc----cC-C-CCCC
Q 039378 429 RNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAA----RG-L-DIPD 497 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~----~G-l-di~~ 497 (600)
+.++||.|+++.-+......+... ++.+..++|+.+...+...+. +...|+|+|. .+. .+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999998888877776654 899999999997665433322 2367999994 222 22 3 5667
Q ss_pred cCEEEE
Q 039378 498 VEVVIN 503 (600)
Q Consensus 498 v~~VI~ 503 (600)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 305
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=60.42 E-value=8 Score=34.76 Aligned_cols=29 Identities=14% Similarity=0.013 Sum_probs=20.7
Q ss_pred cHHHHHHhhhhhcCCcEEEEecCCCCchhH
Q 039378 202 SPIQSHAWPFLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 202 ~~~Q~~~i~~il~~~d~i~~a~TGsGKT~~ 231 (600)
++.++.. ..+..+.-+++.|++|||||..
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 3455555 3345566788899999999985
No 306
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=59.91 E-value=4.2 Score=37.97 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.7
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
.+.+++.||+|+|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 35689999999999985
No 307
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=59.91 E-value=5.6 Score=35.47 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.0
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.+.-+++.|++|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 355688899999999985
No 308
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=59.85 E-value=7 Score=40.69 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=16.0
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.+.+++++|+||||||.+
T Consensus 166 ~~pHlLIaG~TGSGKSt~ 183 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG 183 (512)
T ss_dssp GSCSEEEECCTTSSHHHH
T ss_pred cCceEEEECCCCCCHHHH
Confidence 467899999999999986
No 309
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=59.75 E-value=5.5 Score=36.79 Aligned_cols=84 Identities=17% Similarity=0.299 Sum_probs=53.4
Q ss_pred HHHHHHHHhh--cCCCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-cc
Q 039378 417 LLALLEKYHK--SQRNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VA 489 (600)
Q Consensus 417 l~~~l~~~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~ 489 (600)
++.++..+.. ..+.++||.++++.-+..+++.+... ++.+..++|+.....+ ......+...|+|+|. .+
T Consensus 84 ~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l 160 (245)
T 3dkp_A 84 SIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRL 160 (245)
T ss_dssp HHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHH
T ss_pred HHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHH
Confidence 4444444432 23457999999999999998888764 6677777765432211 1122345678999993 22
Q ss_pred ----cc---CCCCCCcCEEEE
Q 039378 490 ----AR---GLDIPDVEVVIN 503 (600)
Q Consensus 490 ----~~---Gldi~~v~~VI~ 503 (600)
.. ++++.++++||.
T Consensus 161 ~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 161 IYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp HHHHHSSSCSCCCTTCCEEEE
T ss_pred HHHHHhCCCCcccccCcEEEE
Confidence 12 478888888874
No 310
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=59.59 E-value=17 Score=34.85 Aligned_cols=68 Identities=9% Similarity=0.040 Sum_probs=48.5
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-cc-----c-cCCCCC
Q 039378 429 RNRVLVFALYQLEADRLENMLRRS-----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VA-----A-RGLDIP 496 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~-----~-~Gldi~ 496 (600)
..++||.++++.-+.+++..+... ++.+..++|+.....+. .....|||+|. .+ . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 347999999999999988777653 46788888876533221 34567999995 22 1 357888
Q ss_pred CcCEEEE
Q 039378 497 DVEVVIN 503 (600)
Q Consensus 497 ~v~~VI~ 503 (600)
.+++||.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 8998885
No 311
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=59.44 E-value=3.4 Score=36.88 Aligned_cols=18 Identities=28% Similarity=0.178 Sum_probs=15.2
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.+.-+++.|+.|||||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 455688999999999985
No 312
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=59.43 E-value=3.4 Score=38.67 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=14.2
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+.+++.||+|+|||..
T Consensus 46 ~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 4689999999999985
No 313
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=59.43 E-value=5.3 Score=37.29 Aligned_cols=19 Identities=47% Similarity=0.672 Sum_probs=16.8
Q ss_pred hcCCcEEEEecCCCCchhH
Q 039378 213 LNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~ 231 (600)
+.+..+++.|++|+|||..
T Consensus 46 l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HTTCCEEEECSTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4588999999999999985
No 314
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=59.22 E-value=11 Score=37.32 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=15.0
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
..++++.||+|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 45799999999999985
No 315
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=59.14 E-value=4.2 Score=39.86 Aligned_cols=15 Identities=33% Similarity=0.273 Sum_probs=13.1
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
-++++||||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 477899999999985
No 316
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=59.05 E-value=4.4 Score=40.15 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=14.9
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
++.+++.||+|+|||..
T Consensus 70 ~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TCEEEEEESTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35799999999999985
No 317
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=58.98 E-value=12 Score=30.59 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=31.6
Q ss_pred CeEEEEE-eehhcHHHHHHHHHhCCCeEEEEcCCCCH
Q 039378 430 NRVLVFA-LYQLEADRLENMLRRSGWKVVAIHGKKAQ 465 (600)
Q Consensus 430 ~~~lVF~-~s~~~~~~l~~~L~~~~~~~~~l~~~~~~ 465 (600)
.+++||| .+-..+...+..|...|+++..+.|++..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 7899999 57777889999999999999999999764
No 318
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=58.94 E-value=8.3 Score=37.43 Aligned_cols=14 Identities=29% Similarity=0.233 Sum_probs=12.3
Q ss_pred EEEEecCCCCchhH
Q 039378 218 FIGIAKTGSGKTIA 231 (600)
Q Consensus 218 ~i~~a~TGsGKT~~ 231 (600)
+++.|+.|||||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 67889999999984
No 319
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=58.78 E-value=4.7 Score=36.30 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=13.5
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+++.||.|+|||..
T Consensus 60 ~ili~GPPGtGKTt~ 74 (212)
T 1tue_A 60 CLVFCGPANTGKSYF 74 (212)
T ss_dssp EEEEESCGGGCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999985
No 320
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=58.61 E-value=5.4 Score=40.02 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=12.4
Q ss_pred EEEEecCCCCchhH
Q 039378 218 FIGIAKTGSGKTIA 231 (600)
Q Consensus 218 ~i~~a~TGsGKT~~ 231 (600)
++|+||||+|||..
T Consensus 5 i~i~GptgsGKttl 18 (409)
T 3eph_A 5 IVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEECSSSSHHHH
T ss_pred EEEECcchhhHHHH
Confidence 67889999999985
No 321
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=58.53 E-value=5.3 Score=35.92 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=15.6
Q ss_pred hhhcCCcEEEEecCCCCchhH
Q 039378 211 FLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 211 ~il~~~d~i~~a~TGsGKT~~ 231 (600)
.+..|.-+.+.||+|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 455677788899999999984
No 322
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=58.36 E-value=9.4 Score=36.79 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=18.1
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHh
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLS 242 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~ 242 (600)
+.-+.+.||+|+|||.. +..+..++.
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 44577889999999984 444555444
No 323
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=57.99 E-value=5.7 Score=34.41 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=14.3
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+.-+++.|++|||||..
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 44578899999999985
No 324
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=57.94 E-value=3.2 Score=36.12 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=14.6
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+.+.||+|||||..
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 345577899999999984
No 325
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=57.79 E-value=6.1 Score=34.67 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=12.7
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+.+.||.|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999999984
No 326
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=57.74 E-value=5.7 Score=39.27 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=18.1
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..+++|.| ++.-|.||||||..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 4556778877 45558999999986
No 327
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=57.64 E-value=34 Score=33.64 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=51.7
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-cc-----ccCCCCCC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRR----SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VA-----ARGLDIPD 497 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~-----~~Gldi~~ 497 (600)
...++||.|+++.-+..+.+.+.. .++.+..++|+....+....+. ...|+|+|. .+ ...+.+..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 356899999999999888877764 3678999999998766555443 357999993 22 23456667
Q ss_pred cCEEEE
Q 039378 498 VEVVIN 503 (600)
Q Consensus 498 v~~VI~ 503 (600)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 788774
No 328
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=57.39 E-value=3.6 Score=36.25 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=14.2
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+.-++++|++|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34578899999999985
No 329
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=57.31 E-value=18 Score=40.18 Aligned_cols=71 Identities=17% Similarity=0.318 Sum_probs=47.4
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-ccc----cC-C-CCCC
Q 039378 429 RNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAA----RG-L-DIPD 497 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~----~G-l-di~~ 497 (600)
++++||.|+++.-+......+... ++.+..+||+.+...+...+. +...|+|+|. .+. .+ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999888877776654 899999999987665433322 3467999994 222 22 3 5667
Q ss_pred cCEEEE
Q 039378 498 VEVVIN 503 (600)
Q Consensus 498 v~~VI~ 503 (600)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788874
No 330
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=57.30 E-value=5.7 Score=35.04 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=15.7
Q ss_pred hcCCcEEEEecCCCCchhH
Q 039378 213 LNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~ 231 (600)
..+.-+++.|++|||||..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TTSCEEEEEECTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3456788999999999985
No 331
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=56.99 E-value=18 Score=26.84 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCCeEEEEEeehhcHHHHHHHHHhCCCe-EEEEcCCCC
Q 039378 417 LLALLEKYHKSQRNRVLVFALYQLEADRLENMLRRSGWK-VVAIHGKKA 464 (600)
Q Consensus 417 l~~~l~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~ 464 (600)
+...+..+......+++|||.+-..+...+..|...|+. +..+ |++.
T Consensus 29 l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 29 VKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp HHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred HHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 333444442234678999999988889999999999985 5556 7654
No 332
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=56.91 E-value=4.1 Score=38.97 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=13.2
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
-++++||+|||||..
T Consensus 35 livl~G~sGsGKSTl 49 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEECCTTSCTHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999985
No 333
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=56.88 E-value=8.8 Score=36.94 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=18.6
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHh
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLS 242 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~ 242 (600)
.|.-+.+.||+|+|||+. +..+..++.
T Consensus 99 ~g~vi~lvG~nGsGKTTl--l~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS--LGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHH--HHHHHHHHH
Confidence 345577889999999984 334444444
No 334
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=56.67 E-value=7.3 Score=34.54 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=17.4
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHh
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLS 242 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~ 242 (600)
.-+.+.+|+|+|||.. +-++..++.
T Consensus 2 ~~i~i~G~nG~GKTTl--l~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTL--IHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHH--HHHHHHHHH
T ss_pred CEEEEECCCCChHHHH--HHHHHhhcc
Confidence 4577889999999984 334444444
No 335
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=56.52 E-value=3.1 Score=45.50 Aligned_cols=70 Identities=16% Similarity=0.376 Sum_probs=47.7
Q ss_pred CeEEEEEeehhcHHHH-HHHHHhCC---CeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-cccc-----------CC
Q 039378 430 NRVLVFALYQLEADRL-ENMLRRSG---WKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VAAR-----------GL 493 (600)
Q Consensus 430 ~~~lVF~~s~~~~~~l-~~~L~~~~---~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~~~-----------Gl 493 (600)
+++||.++++.-+... ...|.... +.+..++|+.+...+...+. +...|||+|. .+.. .+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999888888 77776653 79999999987655443332 5678999994 3332 34
Q ss_pred CCCCcCEEEE
Q 039378 494 DIPDVEVVIN 503 (600)
Q Consensus 494 di~~v~~VI~ 503 (600)
.+..+++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6677888874
No 336
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=56.35 E-value=6.1 Score=38.49 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=17.9
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..+++|.+ ++.-|.||||||..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceE
Confidence 3445668876 55568999999986
No 337
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=56.33 E-value=6.5 Score=37.89 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=19.1
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHH
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVL 241 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~ 241 (600)
.|.-+.+.||+|+|||.. +-++..++
T Consensus 125 ~Ge~vaIvGpsGsGKSTL--l~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML--CNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhhhc
Confidence 566788999999999984 34455544
No 338
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=55.93 E-value=72 Score=32.82 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=49.1
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHH---H-hcCCcEEEEchHHHHHHHHccCCCccceEEE
Q 039378 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITA---L-RSGVDIVIGTPGRLIDLIEMNVCHLSEVSFV 332 (600)
Q Consensus 257 ~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---l-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~l 332 (600)
.+|++..+.-+..+.+.+...+ .++..++|+......... + ....+|+|+|+..+-. .+++..+++|
T Consensus 350 ~~ivf~~~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~v 420 (510)
T 2oca_A 350 AFVMFKHVSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHHV 420 (510)
T ss_dssp EEEEESSHHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEEE
T ss_pred eEEEEecHHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcEE
Confidence 4555555666677777777654 367777787765443322 2 2347899999776633 4578889999
Q ss_pred EEcccc
Q 039378 333 VLDEAD 338 (600)
Q Consensus 333 ViDEah 338 (600)
|+..+.
T Consensus 421 i~~~~~ 426 (510)
T 2oca_A 421 VLAHGV 426 (510)
T ss_dssp EESSCC
T ss_pred EEeCCC
Confidence 988776
No 339
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=55.75 E-value=4.1 Score=36.56 Aligned_cols=18 Identities=28% Similarity=0.191 Sum_probs=14.9
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.+.-+++.|+.|||||..
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 345678999999999985
No 340
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=55.67 E-value=6.5 Score=35.04 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=14.9
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+.+.|++|||||..
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 455678889999999985
No 341
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=55.59 E-value=12 Score=37.00 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=15.0
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
.+.+++.||+|+|||..
T Consensus 117 ~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CSEEEEESSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 45799999999999985
No 342
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=55.43 E-value=8.1 Score=38.16 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=18.0
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHH
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHV 240 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~ 240 (600)
.|.-+++.+|+|+|||.. ++.++..+
T Consensus 60 ~G~i~~I~GppGsGKSTL-al~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL-ALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHH
Confidence 345678899999999985 44444443
No 343
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=55.41 E-value=6.6 Score=38.65 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=17.8
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..+++|.+ ++.-|.||||||..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeE
Confidence 3445667876 45568999999986
No 344
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=55.15 E-value=9.4 Score=39.04 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=18.4
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHH
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVL 241 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~ 241 (600)
.|.=++++|++|+|||.. ++-+..++.
T Consensus 196 ~G~liiIaG~pG~GKTtl-al~ia~~~a 222 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAF-ALKQAKNMS 222 (444)
T ss_dssp SSCEEEEEECSSSSHHHH-HHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHH-HHHHHHHHH
Confidence 445588999999999975 333344443
No 345
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=55.15 E-value=7.1 Score=38.39 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=18.7
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..+++|.+ ++.-|.||||||..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFT 101 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEe
Confidence 5666778877 45568999999986
No 346
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=54.99 E-value=5.5 Score=35.51 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=14.0
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
.-++++|++|||||..
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588999999999985
No 347
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=54.93 E-value=6.8 Score=38.70 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=17.9
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..+++|.+ ++.-|.||||||..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 4455678877 44558999999986
No 348
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=54.81 E-value=6.1 Score=36.74 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.8
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+.+++.||+|+|||..
T Consensus 50 ~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3489999999999984
No 349
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=54.50 E-value=6.7 Score=38.28 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=18.9
Q ss_pred HHhhhhhcCCc--EEEEecCCCCchhH
Q 039378 207 HAWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 207 ~~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
..+..+++|.+ ++.-|.||||||..
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 35566778877 45568999999986
No 350
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=54.47 E-value=7 Score=38.48 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=18.9
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..+++|.+ ++.-|.||||||..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyT 102 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYT 102 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceE
Confidence 5667788887 44568999999986
No 351
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=54.41 E-value=6.9 Score=38.98 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=15.2
Q ss_pred EEEEecCCCCchhHhhHHHHHH
Q 039378 218 FIGIAKTGSGKTIAFGVPAMMH 239 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~lp~l~~ 239 (600)
.++.|+||+|||.. +=++..
T Consensus 28 ~vi~G~NGaGKT~i--leAI~~ 47 (371)
T 3auy_A 28 VAIIGENGSGKSSI--FEAVFF 47 (371)
T ss_dssp EEEEECTTSSHHHH--HHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHH
Confidence 57789999999995 444554
No 352
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=54.39 E-value=7 Score=38.56 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=18.1
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..+++|.+ ++.-|.||||||..
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 4455678877 45568999999986
No 353
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=54.31 E-value=7 Score=38.80 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=17.7
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..+++|.+ ++.-|.||||||..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 3445678876 45568999999986
No 354
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=54.27 E-value=7.9 Score=31.49 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=31.6
Q ss_pred CCeEEEEEeehhc--HHHHHHHHHhCCCeEEEEcCCCC
Q 039378 429 RNRVLVFALYQLE--ADRLENMLRRSGWKVVAIHGKKA 464 (600)
Q Consensus 429 ~~~~lVF~~s~~~--~~~l~~~L~~~~~~~~~l~~~~~ 464 (600)
..+++|||.+-.. +...+..|...|+.+..+.|++.
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 5689999999877 88999999999999889999865
No 355
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=54.22 E-value=7.8 Score=33.94 Aligned_cols=15 Identities=27% Similarity=0.135 Sum_probs=13.0
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
-+++.|++|||||..
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 368899999999985
No 356
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=54.17 E-value=6.8 Score=38.64 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=17.2
Q ss_pred hhhhhcCCc--EEEEecCCCCchhH
Q 039378 209 WPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 209 i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
+..++.|.+ ++.-|.||||||..
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceE
Confidence 344667876 45568999999986
No 357
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=54.16 E-value=7 Score=39.30 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=17.3
Q ss_pred hhhhhcCCc--EEEEecCCCCchhH
Q 039378 209 WPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 209 i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
+..++.|.+ ++.-|.||||||..
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeE
Confidence 445667876 45568999999986
No 358
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=54.14 E-value=9.9 Score=40.02 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=19.2
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHH
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVL 241 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~ 241 (600)
..+++|.|.||||||.+ +-.++..++
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 46899999999999986 333444444
No 359
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=54.13 E-value=6.1 Score=38.82 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=17.2
Q ss_pred hhhhhcCCc--EEEEecCCCCchhH
Q 039378 209 WPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 209 i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
+..+++|.+ ++.-|.||||||..
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeE
Confidence 444667876 45568999999986
No 360
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=54.10 E-value=4.5 Score=35.66 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=14.1
Q ss_pred CcEEEEecCCCCchhHh
Q 039378 216 RDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~ 232 (600)
.-+++.|++|||||...
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999853
No 361
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=54.04 E-value=56 Score=35.22 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=56.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHH---Hh-cCCcEEEEchHHHHHHHHccCCCccce
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITA---LR-SGVDIVIGTPGRLIDLIEMNVCHLSEV 329 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 329 (600)
+.++||.|+|+.-+..+.+.+...+ +.+..++|+......... +. ...+|+|||.- + ...+.+..+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~g----i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-----l-~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHG----IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----L-REGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----C-CTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC----CCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-----h-hcCccCCCC
Confidence 3468999999999999999988864 677777877665544333 33 34799999932 2 335678889
Q ss_pred EEEEEcccchh
Q 039378 330 SFVVLDEADRM 340 (600)
Q Consensus 330 ~~lViDEah~l 340 (600)
++||+=+++..
T Consensus 509 ~lVI~~d~d~~ 519 (664)
T 1c4o_A 509 SLVAILDADKE 519 (664)
T ss_dssp EEEEETTTTSC
T ss_pred CEEEEeCCccc
Confidence 99998887754
No 362
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=54.03 E-value=6.8 Score=38.77 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=17.9
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..++.|.+ ++.-|.||||||..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 4455678876 45568999999986
No 363
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=53.93 E-value=11 Score=37.22 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=15.2
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+++.+++|+|||..
T Consensus 60 ~G~iv~I~G~pGsGKTtL 77 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTV 77 (349)
T ss_dssp TTSEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456688999999999985
No 364
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=53.92 E-value=6.9 Score=38.74 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=17.7
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..++.|.+ ++.-|.||||||..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceE
Confidence 3445668876 45568999999986
No 365
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=53.90 E-value=6.2 Score=39.16 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=18.2
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..++.|.+ ++.-|.||||||..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 4556678876 45568999999986
No 366
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=53.82 E-value=13 Score=32.21 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=12.1
Q ss_pred EEEEecCCCCchhH
Q 039378 218 FIGIAKTGSGKTIA 231 (600)
Q Consensus 218 ~i~~a~TGsGKT~~ 231 (600)
+.++++.|||||..
T Consensus 7 i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999984
No 367
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=53.65 E-value=7.1 Score=38.56 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=17.8
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..+++|.+ ++.-|.||||||..
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 3445668876 45568999999986
No 368
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=53.62 E-value=7.8 Score=34.72 Aligned_cols=16 Identities=31% Similarity=0.007 Sum_probs=13.1
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
.-+.+.||+|||||+.
T Consensus 7 ~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 7 FVIGIAGGTASGKTTL 22 (211)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3466889999999984
No 369
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=53.59 E-value=7.1 Score=38.73 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=17.7
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..++.|.+ ++..|.||||||..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 3445678876 45568999999976
No 370
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=53.44 E-value=7 Score=35.02 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=12.9
Q ss_pred EEEEecCCCCchhHh
Q 039378 218 FIGIAKTGSGKTIAF 232 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~ 232 (600)
.++.|+.|||||+.+
T Consensus 8 ~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 8 CLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 578999999999863
No 371
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=53.38 E-value=7.2 Score=38.38 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=17.1
Q ss_pred hhhhhcCCc--EEEEecCCCCchhH
Q 039378 209 WPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 209 i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
+..+++|.+ ++.-|.||||||..
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEE
Confidence 344667876 45568999999986
No 372
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=53.27 E-value=11 Score=37.29 Aligned_cols=27 Identities=22% Similarity=0.118 Sum_probs=18.8
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHH
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVL 241 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~ 241 (600)
.|.-+++.+++|+|||... +.++..+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLa-l~la~~~~ 88 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLT-LQVIAAAQ 88 (356)
T ss_dssp TTSEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 4566889999999999863 33344433
No 373
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=53.23 E-value=7.8 Score=34.77 Aligned_cols=25 Identities=28% Similarity=0.229 Sum_probs=17.2
Q ss_pred cEEEEecCCCCchhHhhHHHHHHHHhc
Q 039378 217 DFIGIAKTGSGKTIAFGVPAMMHVLSN 243 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~~lp~l~~~~~~ 243 (600)
-.++.||+|+|||.. +-++..++..
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhcC
Confidence 357779999999985 4445555443
No 374
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=53.20 E-value=5 Score=35.96 Aligned_cols=20 Identities=25% Similarity=-0.150 Sum_probs=15.5
Q ss_pred hhcCCcEEEEecCCCCchhH
Q 039378 212 LLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 212 il~~~d~i~~a~TGsGKT~~ 231 (600)
+..+.-+.+.|++|||||..
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 33455677899999999984
No 375
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=53.10 E-value=6.8 Score=39.44 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=18.8
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..++.|.+ ++.-|.||||||..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyT 157 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFT 157 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceE
Confidence 5666778887 44558999999986
No 376
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=53.04 E-value=6.7 Score=33.65 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=18.0
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHH
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVL 241 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~ 241 (600)
.|.-+.+.+|.|+|||.. +-++..++
T Consensus 32 ~Ge~v~L~G~nGaGKTTL--lr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTL--TRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHH--HHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhC
Confidence 445577889999999983 44455444
No 377
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=53.01 E-value=7.2 Score=38.32 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=17.3
Q ss_pred hhhhhcCCc--EEEEecCCCCchhH
Q 039378 209 WPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 209 i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
+..+++|.+ ++.-|.||||||..
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEe
Confidence 445667876 45568999999986
No 378
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=52.86 E-value=6.4 Score=34.61 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=12.8
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
-+++.||+|+|||..
T Consensus 4 ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 4 LYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 367889999999984
No 379
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=52.72 E-value=7.8 Score=37.88 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=14.3
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
..+++.||+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5689999999999984
No 380
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=52.66 E-value=6.5 Score=33.75 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.6
Q ss_pred CcEEEEecCCCCchhHh
Q 039378 216 RDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~ 232 (600)
+++++.++.|||||.+.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46889999999999853
No 381
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=52.66 E-value=6.2 Score=40.59 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=15.0
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
++.+++.||+|+|||..
T Consensus 63 ~~~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTAL 79 (456)
T ss_dssp TCEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCcCCHHHH
Confidence 35799999999999985
No 382
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=52.47 E-value=6.6 Score=39.17 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=16.5
Q ss_pred hhhhcCCc--EEEEecCCCCchhH
Q 039378 210 PFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 210 ~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
..++.|.+ ++.-|.||||||..
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeE
Confidence 34667876 45568999999986
No 383
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=51.95 E-value=50 Score=34.38 Aligned_cols=124 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred hhcCCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 039378 212 LLNGRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGG 291 (600)
Q Consensus 212 il~~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g 291 (600)
+..|.-+++.+++|+|||.....-+-........ ++++++- +-..|+...+..++-.
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~-----------vi~~~~e-e~~~~l~~~~~~~g~~----------- 334 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKER-----------AILFAYE-ESRAQLLRNAYSWGMD----------- 334 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCC-----------EEEEESS-SCHHHHHHHHHTTSCC-----------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCC-----------EEEEEEe-CCHHHHHHHHHHcCCC-----------
Q ss_pred CChHHHHHHHhcCCcEEE-------EchHHHHHHHHccCCCccceEEEEEcccchhhcCC-----ChHHHHHHHHhcCcC
Q 039378 292 TSKQPQITALRSGVDIVI-------GTPGRLIDLIEMNVCHLSEVSFVVLDEADRMLDMG-----FEEPVRFILSKISLA 359 (600)
Q Consensus 292 ~~~~~~~~~l~~~~~Iiv-------~Tp~~l~~~l~~~~~~l~~~~~lViDEah~l~~~~-----~~~~~~~il~~~~~~ 359 (600)
...+.....+-+ .+.+...+.+..... ..+.++||+| -=.-++.. ....+..++..+...
T Consensus 335 ------~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l-~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~ 406 (525)
T 1tf7_A 335 ------FEEMERQNLLKIVCAYPESAGLEDHLQIIKSEIN-DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQE 406 (525)
T ss_dssp ------HHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHH-TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHH-hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhC
Q ss_pred CcEEEEe
Q 039378 360 RQMVMFS 366 (600)
Q Consensus 360 ~q~i~~S 366 (600)
-..++++
T Consensus 407 g~tvilv 413 (525)
T 1tf7_A 407 EITGLFT 413 (525)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
No 384
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=51.88 E-value=7.8 Score=38.50 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=13.3
Q ss_pred cEEEEecCCCCchhHh
Q 039378 217 DFIGIAKTGSGKTIAF 232 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~ 232 (600)
-.++.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678899999999853
No 385
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=51.88 E-value=7.1 Score=35.81 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.6
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+..+++.|++|||||.+
T Consensus 16 ~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35689999999999985
No 386
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=51.86 E-value=13 Score=35.50 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=15.7
Q ss_pred hcCCcEEEEecCCCCchhH
Q 039378 213 LNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~ 231 (600)
..|.-+++.|++|+|||..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred CCCeEEEEEeCCCCCHHHH
Confidence 4566688999999999985
No 387
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=51.77 E-value=5.8 Score=36.32 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=11.4
Q ss_pred hcCCcEEEEecCCCCchhH
Q 039378 213 LNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 213 l~~~d~i~~a~TGsGKT~~ 231 (600)
..|.-+.+.||+|+|||..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3456678899999999984
No 388
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=51.75 E-value=12 Score=37.09 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=18.5
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHHh
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVLS 242 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~~ 242 (600)
.+.-+.+.||+|+|||+. +..+..++.
T Consensus 156 ~g~vi~lvG~nGsGKTTl--l~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTS--LGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHH--HHHHHhhcc
Confidence 345577889999999984 334444444
No 389
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=51.64 E-value=11 Score=31.69 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=31.7
Q ss_pred CCeEEEEEeeh--hcHHHHHHHHHhCCCeEEEEcCCCC
Q 039378 429 RNRVLVFALYQ--LEADRLENMLRRSGWKVVAIHGKKA 464 (600)
Q Consensus 429 ~~~~lVF~~s~--~~~~~l~~~L~~~~~~~~~l~~~~~ 464 (600)
..+++|||.+- ..+...+..|...|+++..+.|++.
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 56899999987 5788899999999999999999965
No 390
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=51.31 E-value=5.8 Score=35.10 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=14.5
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+.-+++.|++|||||..
T Consensus 12 ~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp SCEEEEEECTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45688999999999985
No 391
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=51.27 E-value=7.2 Score=38.76 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=17.6
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..+++|.+ ++.-|.||||||..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 3445667876 45568999999986
No 392
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=51.24 E-value=10 Score=35.67 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=13.9
Q ss_pred cEEEEecCCCCchhHh
Q 039378 217 DFIGIAKTGSGKTIAF 232 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~ 232 (600)
.+++.||+|+|||+.+
T Consensus 106 ~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIA 121 (267)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999853
No 393
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=51.20 E-value=6.8 Score=36.16 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.5
Q ss_pred cCCcEEEEecCCCCchh
Q 039378 214 NGRDFIGIAKTGSGKTI 230 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~ 230 (600)
.|.-+.+.||.|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45667889999999998
No 394
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=51.19 E-value=39 Score=37.25 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=52.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHh-------cCCCCceEEEEeCCCChHHHHHHHh---------cCCcEEEEchHHHHH
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDA-------GKPCGVKSVCVYGGTSKQPQITALR---------SGVDIVIGTPGRLID 317 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~l~---------~~~~Iiv~Tp~~l~~ 317 (600)
+..+||.+|++.-+..+++.+... ....++.+..++|+.....+...+. ....|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 345899999999999999888752 1224678888899887766654432 2358999995
Q ss_pred HHHccCCCccceEEEEE
Q 039378 318 LIEMNVCHLSEVSFVVL 334 (600)
Q Consensus 318 ~l~~~~~~l~~~~~lVi 334 (600)
.+. ..+++..+.+||-
T Consensus 378 iae-~GidIp~v~~VId 393 (773)
T 2xau_A 378 IAE-TSLTIDGIVYVVD 393 (773)
T ss_dssp HHH-HTCCCTTEEEEEE
T ss_pred HHH-hCcCcCCeEEEEe
Confidence 222 2456778888774
No 395
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=51.15 E-value=11 Score=31.29 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=32.6
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhCCC-eEEEEcCCCC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRSGW-KVVAIHGKKA 464 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~l~~~~~ 464 (600)
...+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 356899999999999999999999999 5889999964
No 396
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=51.11 E-value=7.2 Score=39.31 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=19.1
Q ss_pred HHhhhhhcCCc--EEEEecCCCCchhH
Q 039378 207 HAWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 207 ~~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
..+..++.|.+ ++.-|.||||||..
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeE
Confidence 35666778887 45558999999986
No 397
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=50.85 E-value=8.3 Score=34.94 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=14.1
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
..+++.|++|||||.+
T Consensus 6 ~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 6 LKVMISGAPASGKGTQ 21 (222)
T ss_dssp CCEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999985
No 398
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=50.83 E-value=7.1 Score=35.17 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=13.1
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+++.|++|||||.+
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999985
No 399
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=50.75 E-value=7.3 Score=35.51 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=14.4
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
...+++.|++|||||..
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34688999999999985
No 400
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=50.70 E-value=7.5 Score=34.07 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=13.2
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
-+++.|++|||||.+
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999985
No 401
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=50.67 E-value=8.5 Score=30.23 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=31.3
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhCCCe-EEEEcCCCC
Q 039378 429 RNRVLVFALYQLEADRLENMLRRSGWK-VVAIHGKKA 464 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~ 464 (600)
..+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 568999999988899999999999994 888888864
No 402
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=50.65 E-value=8.9 Score=33.95 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=12.5
Q ss_pred EEEEecCCCCchhH
Q 039378 218 FIGIAKTGSGKTIA 231 (600)
Q Consensus 218 ~i~~a~TGsGKT~~ 231 (600)
+++.|++|||||..
T Consensus 3 I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 3 IAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 67889999999985
No 403
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=50.39 E-value=8 Score=41.29 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=13.9
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 404
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=50.28 E-value=42 Score=33.24 Aligned_cols=85 Identities=14% Similarity=0.165 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhc-CCCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc---
Q 039378 416 RLLALLEKYHKS-QRNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD--- 487 (600)
Q Consensus 416 ~l~~~l~~~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~--- 487 (600)
.+..++..+... ...++||.++++.-+..+++.+... +..+..++|+...... ...+..+...|+|+|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l 170 (414)
T 3eiq_A 94 FAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRV 170 (414)
T ss_dssp HHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHH
T ss_pred HHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHH
Confidence 344445444332 3568999999999998888887654 5677888887764433 4455567889999994
Q ss_pred --ccc-cCCCCCCcCEEEE
Q 039378 488 --VAA-RGLDIPDVEVVIN 503 (600)
Q Consensus 488 --~~~-~Gldi~~v~~VI~ 503 (600)
.+. ..+++..+++||.
T Consensus 171 ~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 171 FDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp HHHHHHTSSCSTTCCEEEE
T ss_pred HHHHHcCCcccccCcEEEE
Confidence 222 3356777887774
No 405
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=50.26 E-value=9.1 Score=33.24 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=14.2
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
|.-+++.|++|||||.+
T Consensus 5 g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45578899999999985
No 406
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=50.23 E-value=8 Score=34.99 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.4
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+..+++.|++|||||..
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34688999999999985
No 407
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=50.06 E-value=9.5 Score=33.37 Aligned_cols=17 Identities=35% Similarity=0.253 Sum_probs=14.3
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+.-+++.|++|||||..
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 44578899999999985
No 408
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=50.03 E-value=8 Score=36.56 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=13.5
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+++.+|+|+|||..
T Consensus 75 gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHL 89 (278)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCcChHHHH
Confidence 489999999999984
No 409
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=50.01 E-value=14 Score=31.09 Aligned_cols=37 Identities=5% Similarity=-0.001 Sum_probs=31.3
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhCCC-eEEEEcCCCC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRSGW-KVVAIHGKKA 464 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~l~~~~~ 464 (600)
...+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 356899999998888899999999999 5999999874
No 410
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=49.89 E-value=8 Score=36.63 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.8
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+.+++.||+|+|||+.
T Consensus 45 ~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLL 60 (274)
T ss_dssp SEEEEESSTTSCHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 3489999999999984
No 411
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=49.88 E-value=15 Score=33.63 Aligned_cols=16 Identities=38% Similarity=0.335 Sum_probs=14.1
Q ss_pred cEEEEecCCCCchhHh
Q 039378 217 DFIGIAKTGSGKTIAF 232 (600)
Q Consensus 217 d~i~~a~TGsGKT~~~ 232 (600)
++++.++.|.|||...
T Consensus 8 ~I~~~~kgGvGKTt~a 23 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAM 23 (228)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5888999999999973
No 412
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=49.75 E-value=19 Score=39.05 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=46.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHh-cCCcEEEEchHHHHHHHHccCCCccceEEE
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALR-SGVDIVIGTPGRLIDLIEMNVCHLSEVSFV 332 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~l 332 (600)
+.++||+||++.-+..+++.+... ++.+..++|. ........+. ...+|+|||. .+.. .+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e~-GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISEM-GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGGT-TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhhc-ceeeC-CcEE
Confidence 456899999999999999888876 4677777773 3333333333 3478999994 2332 34566 6666
Q ss_pred E
Q 039378 333 V 333 (600)
Q Consensus 333 V 333 (600)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 413
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=49.75 E-value=4.9 Score=39.39 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.8
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
..++++.||+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 35699999999999985
No 414
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=49.74 E-value=7.7 Score=34.97 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=12.9
Q ss_pred EEEEecCCCCchhHh
Q 039378 218 FIGIAKTGSGKTIAF 232 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~ 232 (600)
+++.||+||||++++
T Consensus 3 Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999864
No 415
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=49.69 E-value=14 Score=36.70 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=19.0
Q ss_pred cCCcEEEEecCCCCchhHhhHHHHHHHH
Q 039378 214 NGRDFIGIAKTGSGKTIAFGVPAMMHVL 241 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~~~lp~l~~~~ 241 (600)
.|.-+++.+++|+|||.. ++.++..+.
T Consensus 73 ~G~li~I~G~pGsGKTtl-al~la~~~~ 99 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTL-ALAIVAQAQ 99 (366)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHH-HHHHHHHHH
Confidence 455688899999999975 444444443
No 416
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=49.68 E-value=8.3 Score=38.34 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=18.4
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..+++|.+ ++.-|.||||||..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 5566778877 44558999999986
No 417
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=49.66 E-value=8.3 Score=38.45 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=17.7
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..+++|.+ ++.-|.||||||..
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyT 151 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHT 151 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeE
Confidence 3445667876 45568999999986
No 418
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=49.59 E-value=7.8 Score=33.56 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.5
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+++.+++|||||..
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 588999999999985
No 419
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=49.41 E-value=7.7 Score=34.96 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=13.1
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+++.|++|||||.+
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999985
No 420
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=49.39 E-value=10 Score=33.81 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.2
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.+.-+++.|+.|||||..
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 455688999999999995
No 421
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=49.21 E-value=4.5 Score=38.03 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=14.6
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
.+.+++.||+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 35689999999999985
No 422
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=49.17 E-value=7 Score=35.06 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.2
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.+.-+++.|+.|||||..
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 455688999999999985
No 423
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=48.99 E-value=9 Score=39.04 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=17.8
Q ss_pred HhhhhhcCCc--EEEEecCCCCchhH
Q 039378 208 AWPFLLNGRD--FIGIAKTGSGKTIA 231 (600)
Q Consensus 208 ~i~~il~~~d--~i~~a~TGsGKT~~ 231 (600)
.+..++.|.+ ++.-|.||||||..
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEE
Confidence 3445678876 45568999999986
No 424
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=48.84 E-value=6.4 Score=35.04 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=13.1
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
-+++.|++|||||.+
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478889999999985
No 425
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=48.69 E-value=8.2 Score=35.10 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=13.8
Q ss_pred CcEEEEecCCCCchhHh
Q 039378 216 RDFIGIAKTGSGKTIAF 232 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~ 232 (600)
+-+++.||+||||++++
T Consensus 30 kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp EEEEEECCTTCCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 44678899999999864
No 426
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=48.62 E-value=5.9 Score=34.52 Aligned_cols=17 Identities=24% Similarity=0.034 Sum_probs=10.4
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+.-+++.|++|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHT 21 (183)
T ss_dssp CCEEEEECCC----CHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34578999999999985
No 427
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=48.51 E-value=5.7 Score=34.63 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=15.6
Q ss_pred EEEEecCCCCchhHhhHHHHHHHHh
Q 039378 218 FIGIAKTGSGKTIAFGVPAMMHVLS 242 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~lp~l~~~~~ 242 (600)
+.+.+++|||||.. +-++..++.
T Consensus 5 v~IvG~SGsGKSTL--~~~L~~~~~ 27 (171)
T 2f1r_A 5 LSIVGTSDSGKTTL--ITRMMPILR 27 (171)
T ss_dssp EEEEESCHHHHHHH--HHHHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHHhh
Confidence 56789999999985 333444443
No 428
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=48.49 E-value=8.2 Score=33.16 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=13.3
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
-+++.|++|||||.+
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 4 PIFMVGARGCGMTTV 18 (173)
T ss_dssp CEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 578999999999985
No 429
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=48.35 E-value=8.3 Score=33.62 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=13.3
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+++.|++|||||..
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999985
No 430
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=48.20 E-value=25 Score=27.58 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=31.8
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhCCCeEEEEcCCCC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRSGWKVVAIHGKKA 464 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 464 (600)
...+++|||.+-..+...+..|...|+....+.|++.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4678999999988899999999999986678889875
No 431
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=48.08 E-value=71 Score=24.90 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=37.9
Q ss_pred HHHHHHhhcCCCeEEEEEee------hhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHH
Q 039378 419 ALLEKYHKSQRNRVLVFALY------QLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLSL 474 (600)
Q Consensus 419 ~~l~~~~~~~~~~~lVF~~s------~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~ 474 (600)
..+..+.. ..+++||..+ .-.+.++..+|...++.+..+.=...+..+..+.+.
T Consensus 9 ~~v~~~i~--~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~ 68 (109)
T 3ipz_A 9 DTLEKLVN--SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 68 (109)
T ss_dssp HHHHHHHT--SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred HHHHHHHc--cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 34444432 5689999984 889999999999999887777655455555554443
No 432
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=47.96 E-value=21 Score=36.46 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=44.6
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHh-cCCcEEEEchHHHHHHHHccCCCccceEEEE
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALR-SGVDIVIGTPGRLIDLIEMNVCHLSEVSFVV 333 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 333 (600)
.++||.||++.-+.++++.+... ++.+..+++... ......+. ...+|+|||. .+.. .+++.. ++||
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~~-GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISEM-GANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGGS-SCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHHh-CcCCCC-CEEE
Confidence 35899999999999999988775 366666666543 33333333 3479999995 3333 445666 5655
No 433
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=47.44 E-value=8.2 Score=35.33 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=15.1
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+++.+|+|+|||..
T Consensus 23 ~G~~~~i~G~~GsGKTtl 40 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQI 40 (243)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCcHHHH
Confidence 456688999999999985
No 434
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=47.29 E-value=10 Score=29.75 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=32.5
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhCCCe-EEEEcCCCCH
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRSGWK-VVAIHGKKAQ 465 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~ 465 (600)
...+++|||.+-..+...+..|...|+. +..+.|++..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 3568999999988899999999999994 8899998753
No 435
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=47.26 E-value=30 Score=33.18 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=50.6
Q ss_pred CCeEEEEEeehhcHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-cc----c-cCCCCCCc
Q 039378 429 RNRVLVFALYQLEADRLENMLRRS----GWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VA----A-RGLDIPDV 498 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~----~-~Gldi~~v 498 (600)
+.++||.++++.-+..++..+... +..+..++|+.+.......+ . ...|+|+|. .+ . ..+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---R--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH---T--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc---C--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 578999999999999888888743 57899999998876544332 2 367999994 22 1 23466677
Q ss_pred CEEEE
Q 039378 499 EVVIN 503 (600)
Q Consensus 499 ~~VI~ 503 (600)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77774
No 436
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=47.19 E-value=23 Score=36.24 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=17.6
Q ss_pred hhhcCCcEEEEecCCCCchhH
Q 039378 211 FLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 211 ~il~~~d~i~~a~TGsGKT~~ 231 (600)
.+..|+.+++.++.|.|||..
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL 167 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVL 167 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHH
T ss_pred hhccCCEEEEECCCCCCccHH
Confidence 345778899999999999985
No 437
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=47.08 E-value=7.1 Score=33.42 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=13.0
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+++.|++|||||.+
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368899999999985
No 438
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=46.81 E-value=6.9 Score=36.67 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=13.7
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
.-++++|++|||||..
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 3578899999999985
No 439
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=46.80 E-value=8.9 Score=34.76 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=13.5
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
..+.+.|++|||||+.
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577889999999985
No 440
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=46.65 E-value=15 Score=32.72 Aligned_cols=55 Identities=13% Similarity=0.324 Sum_probs=34.8
Q ss_pred CCeEEEEEeehhcHHH-HHHHHHh---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc
Q 039378 429 RNRVLVFALYQLEADR-LENMLRR---SGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD 487 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~-l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~ 487 (600)
..++||+|++..-+.. +.+.+.. .++.+..++|+.....+...+. +...|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5789999999888777 5555443 3678899998765443222221 2467999994
No 441
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=46.52 E-value=7.9 Score=35.10 Aligned_cols=18 Identities=28% Similarity=0.102 Sum_probs=14.8
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+.+.+|+|+|||..
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 445678899999999984
No 442
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=46.41 E-value=7.4 Score=34.17 Aligned_cols=14 Identities=36% Similarity=0.264 Sum_probs=12.5
Q ss_pred EEEEecCCCCchhH
Q 039378 218 FIGIAKTGSGKTIA 231 (600)
Q Consensus 218 ~i~~a~TGsGKT~~ 231 (600)
+++.|+.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999985
No 443
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=46.36 E-value=9.5 Score=34.34 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=13.1
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+++.|++|||||.+
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999985
No 444
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=46.35 E-value=9.5 Score=33.90 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=12.9
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
.+.+.|++|||||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 367889999999985
No 445
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=45.86 E-value=12 Score=30.59 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=32.0
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhCCCe-EEEEcCCCC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRSGWK-VVAIHGKKA 464 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~ 464 (600)
...+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3568999999988889999999999985 888999975
No 446
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=45.76 E-value=13 Score=38.39 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.9
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
..++++.||+|+|||..
T Consensus 201 ~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 35799999999999985
No 447
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=45.73 E-value=9.5 Score=34.02 Aligned_cols=14 Identities=36% Similarity=0.219 Sum_probs=12.3
Q ss_pred EEEEecCCCCchhH
Q 039378 218 FIGIAKTGSGKTIA 231 (600)
Q Consensus 218 ~i~~a~TGsGKT~~ 231 (600)
+.+.|++|||||+.
T Consensus 5 i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 5 VGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 66889999999985
No 448
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=45.69 E-value=12 Score=30.83 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=32.2
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhCCCe-EEEEcCCCC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRSGWK-VVAIHGKKA 464 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~ 464 (600)
...+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3578999999988888999999999995 999999865
No 449
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=45.60 E-value=12 Score=35.75 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=12.0
Q ss_pred EEEEecCCCCchhH
Q 039378 218 FIGIAKTGSGKTIA 231 (600)
Q Consensus 218 ~i~~a~TGsGKT~~ 231 (600)
+.++|++|||||..
T Consensus 34 i~I~G~sGsGKSTl 47 (290)
T 1odf_A 34 IFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999985
No 450
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=45.60 E-value=9.4 Score=33.90 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=13.8
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
.-+++.|++|||||..
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588899999999985
No 451
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=45.56 E-value=9.4 Score=35.24 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.6
Q ss_pred cCCcEEEEecCCCCchh
Q 039378 214 NGRDFIGIAKTGSGKTI 230 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~ 230 (600)
.|.-+.+.||.|||||.
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45667889999999998
No 452
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=45.52 E-value=11 Score=34.12 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=13.8
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
..+++.|++|||||.+
T Consensus 6 ~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578899999999985
No 453
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=44.82 E-value=14 Score=32.28 Aligned_cols=15 Identities=33% Similarity=0.229 Sum_probs=12.7
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
-++++|+.|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 467889999999984
No 454
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=44.80 E-value=12 Score=36.10 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=16.7
Q ss_pred CcEEEEecCCCCchhHhhHHHHHHHHh
Q 039378 216 RDFIGIAKTGSGKTIAFGVPAMMHVLS 242 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~~~lp~l~~~~~ 242 (600)
.-+.+.||+|||||+. +-++..++.
T Consensus 91 ~ivgI~G~sGsGKSTL--~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTT--ARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred EEEEEECCCCchHHHH--HHHHHhhcc
Confidence 3466789999999984 334444443
No 455
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=44.74 E-value=10 Score=34.32 Aligned_cols=18 Identities=28% Similarity=0.195 Sum_probs=15.1
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+.+.||.|+|||..
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566788899999999983
No 456
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=44.64 E-value=13 Score=32.69 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=12.4
Q ss_pred EEEEecCCCCchhH
Q 039378 218 FIGIAKTGSGKTIA 231 (600)
Q Consensus 218 ~i~~a~TGsGKT~~ 231 (600)
+++.|+.|||||++
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57889999999985
No 457
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=44.45 E-value=49 Score=36.42 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=52.1
Q ss_pred CCeEEEEEeehhcHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-cc-----c-------c
Q 039378 429 RNRVLVFALYQLEADRLENMLR----RSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VA-----A-------R 491 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~----~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~-----~-------~ 491 (600)
+.+++|.|++..-|.+.+..+. ..|+.+.++.|+++...|.... .+.|+++|+ -+ . .
T Consensus 124 g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~~ 197 (844)
T 1tf5_A 124 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYKE 197 (844)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcchh
Confidence 5689999999999988777664 4589999999999987665542 268999995 22 1 2
Q ss_pred CCCCCCcCEEEE
Q 039378 492 GLDIPDVEVVIN 503 (600)
Q Consensus 492 Gldi~~v~~VI~ 503 (600)
.+++..++++|.
T Consensus 198 ~l~lr~~~~lVl 209 (844)
T 1tf5_A 198 QMVQRPLHFAVI 209 (844)
T ss_dssp GCCCCCCCEEEE
T ss_pred hhcccCCCEEEE
Confidence 366778888773
No 458
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=44.21 E-value=10 Score=34.61 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=14.3
Q ss_pred cCCcEEEEecCCCCchh
Q 039378 214 NGRDFIGIAKTGSGKTI 230 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~ 230 (600)
.|.-+.+.||.|+|||+
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45567788999999998
No 459
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=44.21 E-value=11 Score=34.76 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.5
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
...+++.|+.|||||.+
T Consensus 29 ~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34688999999999985
No 460
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=44.01 E-value=10 Score=35.99 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=14.8
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+.+.||.|||||+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456678889999999983
No 461
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=43.95 E-value=14 Score=32.80 Aligned_cols=15 Identities=27% Similarity=-0.044 Sum_probs=12.7
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
-+.+.|++|||||..
T Consensus 24 ~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTL 38 (201)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999985
No 462
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=43.95 E-value=6.8 Score=36.54 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=13.3
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
-++++|++|||||..
T Consensus 34 ~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 34 AILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEESCGGGTTHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999985
No 463
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=43.93 E-value=23 Score=29.06 Aligned_cols=37 Identities=8% Similarity=0.283 Sum_probs=31.8
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhCCC-eEEEEcCCCC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRSGW-KVVAIHGKKA 464 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~l~~~~~ 464 (600)
...+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 356899999998888889999999999 5888989984
No 464
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=43.86 E-value=11 Score=33.35 Aligned_cols=15 Identities=27% Similarity=0.178 Sum_probs=12.9
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
-+.+.+++|||||..
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999999985
No 465
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=43.78 E-value=11 Score=34.38 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=12.6
Q ss_pred EEEEecCCCCchhH
Q 039378 218 FIGIAKTGSGKTIA 231 (600)
Q Consensus 218 ~i~~a~TGsGKT~~ 231 (600)
+++.|++|||||.+
T Consensus 3 I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999985
No 466
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=43.70 E-value=11 Score=34.94 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=14.4
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
+.-+++.||.|||||+.
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45688899999999984
No 467
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=43.29 E-value=10 Score=34.68 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=15.0
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+.+.||.|+|||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566678899999999983
No 468
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=43.28 E-value=11 Score=35.46 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.1
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+.+.||.|+|||..
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566688899999999983
No 469
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=43.01 E-value=12 Score=38.15 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=15.0
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
.+++++.+|+|+|||..
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 46799999999999985
No 470
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=42.96 E-value=32 Score=36.98 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=47.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHhcCCcEEEEchHHHHHHHHccCCCccceEEEE
Q 039378 254 NPLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALRSGVDIVIGTPGRLIDLIEMNVCHLSEVSFVV 333 (600)
Q Consensus 254 ~~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 333 (600)
+.++||.++|+.-+.++++.+.+. ++.+..++|+...... ...+.+|+|+|. .+.++ +++. +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----VaerG-IDId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMTG-YTGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHHH-CCCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHcc-CCCC-CcEEE
Confidence 557999999999999999988875 4778888888766542 234569999995 23332 2344 77776
No 471
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=42.95 E-value=26 Score=32.73 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=29.4
Q ss_pred CCcEEEEecCCCCchhHhhHHHHHHHHhcccCccCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q 039378 215 GRDFIGIAKTGSGKTIAFGVPAMMHVLSNRKGKAVGKRVNPLCLVLSPTRELADQIYDVLNDAG 278 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~~~liv~Ptr~La~q~~~~~~~~~ 278 (600)
|..+++.+.+|+||| .+.+-.+...+.+ +-++++++-. +-..++.+.+..++
T Consensus 21 gs~~li~g~p~~~~~-~l~~qfl~~g~~~----------Ge~~~~~~~~-e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 21 SLILIHEEDASSRGK-DILFYILSRKLKS----------DNLVGMFSIS-YPLQLIIRILSRFG 72 (260)
T ss_dssp CEEEEEECSGGGCHH-HHHHHHHHHHHHT----------TCEEEEEECS-SCHHHHHHHHHHTT
T ss_pred CcEEEEEeCCCccHH-HHHHHHHHHHHHC----------CCcEEEEEEe-CCHHHHHHHHHHcC
Confidence 455778767777777 3333334433333 2336666543 44566777777664
No 472
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=42.92 E-value=8.2 Score=34.57 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=12.3
Q ss_pred EEEEecCCCCchhH
Q 039378 218 FIGIAKTGSGKTIA 231 (600)
Q Consensus 218 ~i~~a~TGsGKT~~ 231 (600)
+++.|+.|||||..
T Consensus 3 I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 3 IAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 57889999999985
No 473
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=42.63 E-value=11 Score=35.07 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.0
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+.+.||.|||||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566678899999999983
No 474
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=42.26 E-value=13 Score=30.70 Aligned_cols=37 Identities=5% Similarity=0.175 Sum_probs=31.9
Q ss_pred CCCeEEEEEeehhcHHHHHHHHHhCCCe-EEEEcCCCC
Q 039378 428 QRNRVLVFALYQLEADRLENMLRRSGWK-VVAIHGKKA 464 (600)
Q Consensus 428 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~ 464 (600)
...+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3568999999988889999999999995 888889864
No 475
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=42.17 E-value=11 Score=35.50 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.5
Q ss_pred cCCcEEEEecCCCCchh
Q 039378 214 NGRDFIGIAKTGSGKTI 230 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~ 230 (600)
.|.-+.+.||.|||||+
T Consensus 36 ~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST 52 (266)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45667788999999998
No 476
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=42.08 E-value=18 Score=32.27 Aligned_cols=14 Identities=36% Similarity=0.470 Sum_probs=11.7
Q ss_pred eEEEEEcccchhhc
Q 039378 329 VSFVVLDEADRMLD 342 (600)
Q Consensus 329 ~~~lViDEah~l~~ 342 (600)
-.+|||||||.+..
T Consensus 88 ~~vliIDEAq~l~~ 101 (199)
T 2r2a_A 88 GSIVIVDEAQDVWP 101 (199)
T ss_dssp TCEEEETTGGGTSB
T ss_pred ceEEEEEChhhhcc
Confidence 56999999999853
No 477
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=42.00 E-value=10 Score=35.15 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=14.8
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+.+.||.|||||..
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455678889999999983
No 478
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=41.86 E-value=65 Score=34.75 Aligned_cols=73 Identities=12% Similarity=0.166 Sum_probs=53.2
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChH---HHHHHHh---cCCcEEEEchHHHHHHHHccCCCccceE
Q 039378 257 CLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQ---PQITALR---SGVDIVIGTPGRLIDLIEMNVCHLSEVS 330 (600)
Q Consensus 257 ~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~l~---~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~ 330 (600)
.+|+++++.-+.++.+.+... ++.+..++|+.... .....+. ...+|+|||. .+. ..+++ .++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e-~GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG-MGLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG-SSCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH-CCcCc-Ccc
Confidence 467789999889998888875 46788899998766 3344444 3379999996 233 35567 899
Q ss_pred EEEEcccchh
Q 039378 331 FVVLDEADRM 340 (600)
Q Consensus 331 ~lViDEah~l 340 (600)
+||+-...+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9998877654
No 479
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=41.85 E-value=36 Score=33.96 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=21.0
Q ss_pred HHHHHhhhhh---cCCcEEEEecCCCCchhH
Q 039378 204 IQSHAWPFLL---NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 204 ~Q~~~i~~il---~~~d~i~~a~TGsGKT~~ 231 (600)
.=..+|..++ .|+.+.+.+|+|+|||..
T Consensus 160 tGiraID~~~pi~rGQr~~IvG~sG~GKTtL 190 (422)
T 3ice_A 160 LTARVLDLASPIGRGQRGLIVAPPKAGKTML 190 (422)
T ss_dssp HHHHHHHHHSCCBTTCEEEEECCSSSSHHHH
T ss_pred ccceeeeeeeeecCCcEEEEecCCCCChhHH
Confidence 3345555544 678899999999999985
No 480
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=41.83 E-value=21 Score=34.64 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=13.8
Q ss_pred CCcEEEEecCCCCchhH
Q 039378 215 GRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 215 ~~d~i~~a~TGsGKT~~ 231 (600)
++-+++.+++|+|||..
T Consensus 105 ~~vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTS 121 (320)
T ss_dssp CEEEEEESSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34577889999999985
No 481
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=41.57 E-value=37 Score=36.29 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=45.1
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHh-cCCcEEEEchHHHHHHHHccCCCccceEEEE
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALR-SGVDIVIGTPGRLIDLIEMNVCHLSEVSFVV 333 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 333 (600)
.++||.|+++.-+..+++.+...+ +.+..++|. ........++ ...+|+|||. .+.. .+++. +++||
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~g----~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v~~r-GiDi~-v~~VI 423 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKSG----KRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----ISEM-GANFR-AGRVI 423 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHTT----CCEEEECTT-THHHHTTHHHHSCCSEEEECG-----GGGT-TCCCC-CSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHcC----CcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----HHHc-CcccC-ceEEE
Confidence 358999999999999999998863 667777764 3333333333 3579999995 3333 34454 66664
No 482
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=41.56 E-value=14 Score=35.74 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=16.1
Q ss_pred EEEEecCCCCchhHhhHHHHHHHHh
Q 039378 218 FIGIAKTGSGKTIAFGVPAMMHVLS 242 (600)
Q Consensus 218 ~i~~a~TGsGKT~~~~lp~l~~~~~ 242 (600)
+.+.||+|||||.. +-++..++.
T Consensus 95 igI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEECCCCCCHHHH--HHHHHHHhc
Confidence 55679999999984 334555544
No 483
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=41.48 E-value=11 Score=35.12 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=14.5
Q ss_pred cCCcEEEEecCCCCchh
Q 039378 214 NGRDFIGIAKTGSGKTI 230 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~ 230 (600)
.|.-+.+.||.|+|||+
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45667788999999998
No 484
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=41.44 E-value=52 Score=36.25 Aligned_cols=69 Identities=12% Similarity=-0.009 Sum_probs=50.9
Q ss_pred CCeEEEEEeehhcHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHHHhcCCCCEEEecc-cc-----cc-------
Q 039378 429 RNRVLVFALYQLEADRLENMLR----RSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATD-VA-----AR------- 491 (600)
Q Consensus 429 ~~~~lVF~~s~~~~~~l~~~L~----~~~~~~~~l~~~~~~~~r~~~~~~F~~g~~~vLvaT~-~~-----~~------- 491 (600)
+.+++|.|+|..-|.+.+..+. ..|+.+..+.|+++...|.... .+.|+|+|+ .+ ..
T Consensus 115 g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~~ 188 (853)
T 2fsf_A 115 GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSPE 188 (853)
T ss_dssp SSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGG
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccHh
Confidence 5689999999999988776654 4589999999999987655433 378999995 22 12
Q ss_pred CCCCCCcCEEEE
Q 039378 492 GLDIPDVEVVIN 503 (600)
Q Consensus 492 Gldi~~v~~VI~ 503 (600)
.+...++.++|.
T Consensus 189 ~~~~~~l~~lVl 200 (853)
T 2fsf_A 189 ERVQRKLHYALV 200 (853)
T ss_dssp GCCCCSCCEEEE
T ss_pred HhcccCCcEEEE
Confidence 256677888773
No 485
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=41.37 E-value=12 Score=35.17 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.3
Q ss_pred cCCcEEEEecCCCCchh
Q 039378 214 NGRDFIGIAKTGSGKTI 230 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~ 230 (600)
.|.-+.+.||.|+|||+
T Consensus 31 ~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST 47 (262)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45567788999999998
No 486
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=41.18 E-value=9.9 Score=34.29 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=13.0
Q ss_pred cEEEEecCCCCchhH
Q 039378 217 DFIGIAKTGSGKTIA 231 (600)
Q Consensus 217 d~i~~a~TGsGKT~~ 231 (600)
-+.+.|++|||||.+
T Consensus 6 ~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 6 IVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999985
No 487
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=41.09 E-value=9.7 Score=39.28 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=14.2
Q ss_pred CcEEEEecCCCCchhH
Q 039378 216 RDFIGIAKTGSGKTIA 231 (600)
Q Consensus 216 ~d~i~~a~TGsGKT~~ 231 (600)
+.+++.||+|+|||+.
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999985
No 488
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=47.19 E-value=5.7 Score=34.39 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=45.1
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHH---h-cCCcEEEEchHHHHHHHHccCCCccceE
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITAL---R-SGVDIVIGTPGRLIDLIEMNVCHLSEVS 330 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~ 330 (600)
.++||.|+++.-+..+.+.+... ++.+..++|+.........+ . ....|+|+|. .+ . ..+++..++
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~----~-~Gid~~~~~ 100 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VA----A-RGIDIPDVS 100 (170)
Confidence 34799999999998888887765 46677777776544333222 2 2367999993 22 1 233566667
Q ss_pred EEEE
Q 039378 331 FVVL 334 (600)
Q Consensus 331 ~lVi 334 (600)
+||.
T Consensus 101 ~Vi~ 104 (170)
T 2yjt_D 101 HVFN 104 (170)
Confidence 7665
No 489
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=40.91 E-value=17 Score=38.89 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=18.3
Q ss_pred hhhhcCCcEEEEecCCCCchhH
Q 039378 210 PFLLNGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 210 ~~il~~~d~i~~a~TGsGKT~~ 231 (600)
..+..+..+++.+|+|+|||..
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHH
Confidence 3455778999999999999985
No 490
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=40.85 E-value=13 Score=35.03 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=14.9
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+.+.||.|+|||+.
T Consensus 45 ~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456677889999999983
No 491
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=40.80 E-value=13 Score=34.48 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=14.6
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.+.-+.+.||+|||||..
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345677889999999984
No 492
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=40.79 E-value=12 Score=34.56 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=14.8
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+.+.||.|+|||+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456677889999999983
No 493
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=40.33 E-value=25 Score=35.99 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=37.5
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcCCCCceEEEEeCCCChHHHHHHHh-cCCcEEEEch
Q 039378 255 PLCLVLSPTRELADQIYDVLNDAGKPCGVKSVCVYGGTSKQPQITALR-SGVDIVIGTP 312 (600)
Q Consensus 255 ~~~liv~Ptr~La~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~-~~~~Iiv~Tp 312 (600)
.++||.||++.-+..+++.+... ++.+..+++.. .......+. ...+|+|||.
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~-R~~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKS-YDTEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTC-CCCCGGGSSSCCCSEEEESS
T ss_pred CCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHH-HHHHHhhccCCCceEEEECC
Confidence 45899999999999999999886 36677776642 222222333 3478999994
No 494
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=40.26 E-value=13 Score=34.56 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=14.9
Q ss_pred cCCcEEEEecCCCCchhH
Q 039378 214 NGRDFIGIAKTGSGKTIA 231 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~~ 231 (600)
.|.-+.+.||.|+|||+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 556677889999999983
No 495
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=40.14 E-value=13 Score=34.81 Aligned_cols=17 Identities=41% Similarity=0.511 Sum_probs=14.4
Q ss_pred cCCcEEEEecCCCCchh
Q 039378 214 NGRDFIGIAKTGSGKTI 230 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~ 230 (600)
.|.-+.+.||.|+|||+
T Consensus 40 ~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 45667788999999998
No 496
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=40.12 E-value=12 Score=34.70 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.5
Q ss_pred cCCcEEEEecCCCCchh
Q 039378 214 NGRDFIGIAKTGSGKTI 230 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~ 230 (600)
.|.-+.+.||.|+|||.
T Consensus 25 ~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST 41 (249)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45667788999999998
No 497
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=40.07 E-value=13 Score=34.97 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.3
Q ss_pred cCCcEEEEecCCCCchh
Q 039378 214 NGRDFIGIAKTGSGKTI 230 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~ 230 (600)
.|.-+.+.||.|+|||+
T Consensus 49 ~Gei~~liG~NGsGKST 65 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKST 65 (263)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCcHHH
Confidence 45567788999999998
No 498
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=39.83 E-value=1e+02 Score=24.07 Aligned_cols=45 Identities=7% Similarity=0.026 Sum_probs=34.3
Q ss_pred CCeEEEEE------eehhcHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHH
Q 039378 429 RNRVLVFA------LYQLEADRLENMLRRSGWKVVAIHGKKAQHERTKSLS 473 (600)
Q Consensus 429 ~~~~lVF~------~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~ 473 (600)
..+++||. +++-.|..+..+|...++.+..+.=...+..|..+.+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 57899999 5788899999999999988777765555555555444
No 499
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=39.48 E-value=13 Score=35.06 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.5
Q ss_pred cCCcEEEEecCCCCchh
Q 039378 214 NGRDFIGIAKTGSGKTI 230 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~ 230 (600)
.|.-+.+.||.|+|||+
T Consensus 44 ~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKST 60 (271)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45667789999999998
No 500
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=39.27 E-value=13 Score=34.65 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=14.4
Q ss_pred cCCcEEEEecCCCCchh
Q 039378 214 NGRDFIGIAKTGSGKTI 230 (600)
Q Consensus 214 ~~~d~i~~a~TGsGKT~ 230 (600)
.|.-+.+.||.|+|||.
T Consensus 30 ~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKST 46 (253)
T ss_dssp TTCEEEEECCSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45667788999999998
Done!