Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>039379
HQLPIPKSAVHIQSSASQPHSNSHSSYFVRRLIIALVLLFVLASVISSIAWLIVHPLPPV
FTVNSFTVSNFTLLNSRVKGDYELVVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAW
MGPLCLEKMGQQRQSPRFRSDFCGPLHAGEFNEMSNDYGSKRMVSFNVIMRIRVRFGYRI
LPTKQSLMKVSCTNLVAEFSAAKEIHGKLKDTGGKNNCSVHHD

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039379
        (223 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2039632 - symbol:AT2G27260 "AT2G27260" species...   118  1.6e-05   1
TAIR|locus:2079974 - symbol:AT3G52460 "AT3G52460" species...   109  0.00037   1


>TAIR|locus:2039632 [details] [associations]
            symbol:AT2G27260 "AT2G27260" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009506 "plasmodesma" evidence=IDA]
            InterPro:IPR004864 GO:GO:0009506 EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AC006233 Pfam:PF03168 EMBL:AF325072
            EMBL:AY049301 EMBL:AY093756 IPI:IPI00519153 PIR:G84670
            RefSeq:NP_565642.1 UniGene:At.13628 ProteinModelPortal:Q9XIN3
            PaxDb:Q9XIN3 PRIDE:Q9XIN3 EnsemblPlants:AT2G27260.1 GeneID:817268
            KEGG:ath:AT2G27260 TAIR:At2g27260 eggNOG:NOG313634
            HOGENOM:HOG000090343 InParanoid:Q9XIN3 OMA:TRRRVMR PhylomeDB:Q9XIN3
            ProtClustDB:CLSN2713610 ArrayExpress:Q9XIN3 Genevestigator:Q9XIN3
            Uniprot:Q9XIN3
        Length = 243

 Score = 118 (46.6 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 43/172 (25%), Positives = 73/172 (42%)

Query:    51 WLIVHPLPPVFTVNSFTVSNFTLLNSRVKGDYELVVSIKNPNKKASLSIDRSDDVCLMYD 110
             +LIV P  P   +NS +VSNF + N++V G ++L +  +NPN K SL  + +  +C MY 
Sbjct:    81 FLIVRPQLPDVNLNSLSVSNFNVSNNQVSGKWDLQLQFRNPNSKMSLHYETA--LCAMYY 138

Query:   111 KSAAVIATAWMGPLCLEKMGQQRQSPRFRSDFCGPLHAGEF-NEMSNDYGSKRMVSFNVI 169
                ++  T  + P    K  Q   +        G    G   + +  +   K  V F++ 
Sbjct:   139 NRVSLSETR-LQPFDQGKKDQTVVNATL--SVSGTYVDGRLVDSIGKERSVKGNVEFDLR 195

Query:   170 MRIRVRFGYRILPTKQSLMKVSCTNLVAEFSAAKEIHGKLKDTGGKNNCSVH 221
             M   V F Y     ++  + V C ++      +    G+ K  G    C  +
Sbjct:   196 MISYVTFRYGAF-RRRRYVTVYCDDVAVGVPVSS---GEGKMVGSSKRCKTY 243


>TAIR|locus:2079974 [details] [associations]
            symbol:AT3G52460 "AT3G52460" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] EMBL:CP002686 GenomeReviews:BA000014_GR
            EMBL:AL050300 IPI:IPI00528033 PIR:T08453 RefSeq:NP_190814.1
            UniGene:At.53904 PRIDE:Q9SVC7 EnsemblPlants:AT3G52460.1
            GeneID:824411 KEGG:ath:AT3G52460 TAIR:At3g52460 eggNOG:NOG313614
            HOGENOM:HOG000091110 InParanoid:Q9SVC7 OMA:ISTTITW PhylomeDB:Q9SVC7
            ProtClustDB:CLSN2684771 Genevestigator:Q9SVC7 Uniprot:Q9SVC7
        Length = 300

 Score = 109 (43.4 bits), Expect = 0.00037, P = 0.00037
 Identities = 42/155 (27%), Positives = 72/155 (46%)

Query:    51 WLIVHPLPPVFTVNSFTVSNFTLLNSRVKGDYELVVSIKNPNKKASLSIDRSDDVCLMYD 110
             WL++ P  P+F+VN+F+VSNF +        +   ++I+N N K     DR     L+Y 
Sbjct:   128 WLVLRPQIPLFSVNNFSVSNFNVTGPVFSAQWTANLTIENQNTKLKGYFDRIQG--LVYH 185

Query:   111 KSAA----VIATAWMGPLCLE-KMGQQRQSPRFRSDFCGP-LHAGEFNEMSNDYGSKRMV 164
             ++A      +ATA+  P+ +E K            D   P + +   +EM  +  +   V
Sbjct:   186 QNAVGEDEFLATAFFQPVFVETKKSVVIGETLTAGDKEQPKVPSWVVDEMKKERETGT-V 244

Query:   165 SFNVIMRIRVRFGYRILPTKQSLMKVSCTNLVAEF 199
             +F++ M + V F       ++S +KV C  L   F
Sbjct:   245 TFSLRMAVWVTFKTDGWAARESGLKVFCGKLKVGF 279


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      223       187   0.00085  110 3  11 22  0.41    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  162 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.30u 0.14s 15.44t   Elapsed:  00:00:01
  Total cpu time:  15.30u 0.14s 15.44t   Elapsed:  00:00:01
  Start:  Fri May 10 23:15:58 2013   End:  Fri May 10 23:15:59 2013

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