BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039379
         (223 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0DKB6|MPC1L_HUMAN Mitochondrial pyruvate carrier 1-like protein OS=Homo sapiens
           GN=MPC1L PE=2 SV=1
          Length = 136

 Score = 32.3 bits (72), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 13/85 (15%)

Query: 127 EKMGQQRQSPRFR-----SDFCGP-----LHAGEFNEM--SNDYGSKRMVSFNVIMR-IR 173
            KM    QS  FR     + F GP     L    F +M  S +  S RM +  ++   I 
Sbjct: 9   RKMRDNFQSKEFREYVSSTHFWGPAFSWGLPLAAFKDMKASPEIISGRMTTALILYSAIF 68

Query: 174 VRFGYRILPTKQSLMKVSCTNLVAE 198
           +RF YR+ P    LM   CTN++A+
Sbjct: 69  MRFAYRVQPRNLLLMACHCTNVMAQ 93


>sp|Q6F0Y1|GCP_MESFL Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
           OS=Mesoplasma florum (strain ATCC 33453 / NBRC 100688 /
           NCTC 11704 / L1) GN=gcp PE=3 SV=1
          Length = 317

 Score = 31.6 bits (70), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 9/134 (6%)

Query: 12  IQSSASQPHSNSHSSYFVRRLIIALVLLFVLASVISSIAWLIVHPLPPVFTVNSF----T 67
           ++SS ++     H +Y  +  +I  +++  L  V  +IA  I  PL P+  +       +
Sbjct: 62  LESSNTKIEEIDHVAYTEKPGLIGSLIIGKL--VAETIASYIDKPLMPLHHIEGHIYGAS 119

Query: 68  VSN---FTLLNSRVKGDYELVVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAWMGPL 124
           + N   + +L   V G +  +  + +PN+   +     D +   YDK A V+   + G  
Sbjct: 120 IENEFVYPVLAMVVSGGHTQIEIVNSPNEFEVIGATLDDAIGECYDKVARVMGLGYPGGP 179

Query: 125 CLEKMGQQRQSPRF 138
            ++K+ Q+     F
Sbjct: 180 KIDKLAQKGNKEAF 193


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.133    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,849,046
Number of Sequences: 539616
Number of extensions: 2689224
Number of successful extensions: 5928
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5926
Number of HSP's gapped (non-prelim): 5
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)