Query 039379
Match_columns 223
No_of_seqs 111 out of 768
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:05:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 3.7E-36 8E-41 252.1 24.0 203 3-223 8-218 (219)
2 PF03168 LEA_2: Late embryogen 99.4 4.4E-12 9.6E-17 92.8 9.6 98 85-193 1-100 (101)
3 smart00769 WHy Water Stress an 98.3 1.2E-05 2.6E-10 59.3 10.1 60 77-140 12-72 (100)
4 PF07092 DUF1356: Protein of u 97.5 0.0067 1.5E-07 51.4 14.6 82 54-139 96-180 (238)
5 PF12751 Vac7: Vacuolar segreg 96.8 0.0046 9.9E-08 55.6 7.7 34 78-113 346-379 (387)
6 COG5608 LEA14-like dessication 96.8 0.046 1E-06 43.2 12.2 77 57-141 31-108 (161)
7 PLN03160 uncharacterized prote 94.7 0.34 7.3E-06 40.8 9.6 104 20-133 31-147 (219)
8 KOG3950 Gamma/delta sarcoglyca 79.5 2.7 5.9E-05 35.9 3.9 51 47-97 53-125 (292)
9 TIGR02588 conserved hypothetic 73.7 8 0.00017 29.5 4.7 49 40-94 13-63 (122)
10 PRK07021 fliL flagellar basal 64.7 17 0.00037 28.9 5.2 16 97-113 78-93 (162)
11 PF14155 DUF4307: Domain of un 62.8 62 0.0013 24.1 10.1 28 108-140 71-100 (112)
12 PF14927 Neurensin: Neurensin 60.0 10 0.00022 29.7 3.0 35 20-54 34-68 (140)
13 COG1580 FliL Flagellar basal b 59.5 26 0.00055 28.0 5.3 21 34-54 22-42 (159)
14 COG5353 Uncharacterized protei 54.6 4.5 9.6E-05 32.0 0.2 33 25-57 2-34 (161)
15 PF11837 DUF3357: Domain of un 51.7 4.9 0.00011 29.8 0.0 27 23-49 22-48 (106)
16 PRK05529 cell division protein 48.5 26 0.00057 30.0 4.0 42 58-100 58-127 (255)
17 PF09624 DUF2393: Protein of u 48.3 85 0.0018 24.2 6.6 57 48-113 35-93 (149)
18 PF14221 DUF4330: Domain of un 46.3 1.5E+02 0.0033 23.7 11.5 44 83-128 56-99 (168)
19 COG2332 CcmE Cytochrome c-type 44.7 1.3E+02 0.0027 23.9 6.9 39 81-121 71-109 (153)
20 PF12505 DUF3712: Protein of u 43.1 1.4E+02 0.003 22.3 7.7 66 116-188 3-69 (125)
21 COG1589 FtsQ Cell division sep 42.4 26 0.00055 30.2 3.1 40 32-71 31-70 (269)
22 PF04478 Mid2: Mid2 like cell 41.8 10 0.00022 30.1 0.4 43 40-99 61-103 (154)
23 PF10907 DUF2749: Protein of u 41.4 41 0.00089 22.7 3.2 16 42-57 13-28 (66)
24 PF06024 DUF912: Nucleopolyhed 40.6 41 0.00089 24.6 3.5 24 32-55 64-88 (101)
25 KOG3927 Na+/K+ ATPase, beta su 39.6 20 0.00044 31.6 2.0 43 22-65 38-83 (300)
26 PRK13150 cytochrome c-type bio 39.2 1.7E+02 0.0037 23.4 7.0 39 81-121 77-115 (159)
27 PF06072 Herpes_US9: Alphaherp 38.7 21 0.00045 23.7 1.4 7 24-30 27-33 (60)
28 PF13807 GNVR: G-rich domain o 35.9 75 0.0016 21.9 4.1 34 11-44 42-75 (82)
29 COG4698 Uncharacterized protei 35.8 31 0.00068 28.2 2.3 40 26-68 9-48 (197)
30 PRK06531 yajC preprotein trans 35.2 15 0.00033 27.6 0.4 10 49-58 15-24 (113)
31 PF15012 DUF4519: Domain of un 34.1 46 0.00099 21.8 2.5 13 45-57 44-56 (56)
32 PF12505 DUF3712: Protein of u 32.2 83 0.0018 23.6 4.1 26 78-105 98-123 (125)
33 PRK13159 cytochrome c-type bio 31.9 2.5E+02 0.0054 22.4 6.8 57 64-122 52-110 (155)
34 PRK15136 multidrug efflux syst 31.7 32 0.0007 31.2 2.1 7 22-28 13-19 (390)
35 PF11395 DUF2873: Protein of u 30.7 15 0.00032 22.1 -0.2 11 45-55 23-33 (43)
36 PF02009 Rifin_STEVOR: Rifin/s 30.2 14 0.0003 32.7 -0.6 18 38-55 263-280 (299)
37 TIGR00996 Mtu_fam_mce virulenc 29.7 2E+02 0.0044 24.6 6.7 12 105-118 49-60 (291)
38 PRK10893 lipopolysaccharide ex 29.6 3.1E+02 0.0068 22.4 10.3 29 55-84 37-65 (192)
39 PF05399 EVI2A: Ectropic viral 29.6 82 0.0018 26.4 3.9 21 28-48 128-148 (227)
40 PF08113 CoxIIa: Cytochrome c 28.8 23 0.00051 20.6 0.4 15 38-52 10-24 (34)
41 PF09865 DUF2092: Predicted pe 28.7 3.5E+02 0.0075 22.6 8.6 37 75-113 34-72 (214)
42 PF11322 DUF3124: Protein of u 28.1 2E+02 0.0044 22.0 5.5 56 76-136 19-75 (125)
43 PRK13183 psbN photosystem II r 27.8 88 0.0019 19.7 2.9 24 34-57 10-33 (46)
44 PF12751 Vac7: Vacuolar segreg 27.7 47 0.001 30.3 2.3 7 25-31 296-302 (387)
45 PF06092 DUF943: Enterobacteri 27.6 32 0.0007 27.5 1.2 18 41-58 13-30 (157)
46 PF06129 Chordopox_G3: Chordop 27.1 57 0.0012 24.4 2.3 65 48-113 15-87 (109)
47 PF14283 DUF4366: Domain of un 27.1 68 0.0015 27.0 3.1 11 51-61 180-190 (218)
48 PF01102 Glycophorin_A: Glycop 27.0 18 0.00038 27.7 -0.4 15 41-55 76-90 (122)
49 CHL00020 psbN photosystem II p 25.5 1E+02 0.0022 19.1 2.8 23 35-57 8-30 (43)
50 TIGR03726 strep_RK_lipo putati 25.1 1E+02 0.0022 18.1 2.6 23 23-45 3-25 (34)
51 PF00927 Transglut_C: Transglu 25.1 2.6E+02 0.0056 19.9 7.4 59 77-139 12-75 (107)
52 PHA02973 hypothetical protein; 24.9 1.4E+02 0.0031 22.0 4.0 53 49-112 15-68 (102)
53 PF06789 UPF0258: Uncharacteri 24.7 39 0.00085 26.8 1.1 9 24-32 128-136 (159)
54 PHA03093 EEV glycoprotein; Pro 24.3 21 0.00046 29.2 -0.4 30 24-54 30-59 (185)
55 PF05781 MRVI1: MRVI1 protein; 24.1 61 0.0013 31.0 2.4 29 28-56 476-504 (538)
56 PRK13254 cytochrome c-type bio 23.8 3.6E+02 0.0078 21.2 7.0 38 83-122 72-109 (148)
57 KOG1773 Stress responsive prot 23.4 2.4E+02 0.0051 19.0 4.5 45 5-58 17-61 (63)
58 TIGR01655 yxeA_fam conserved h 23.0 3.1E+02 0.0067 20.4 5.7 12 82-93 55-66 (114)
59 TIGR01478 STEVOR variant surfa 22.6 18 0.00039 31.7 -1.2 19 34-52 264-282 (295)
60 PF09911 DUF2140: Uncharacteri 22.6 1.3E+02 0.0028 24.6 3.8 18 42-59 14-31 (187)
61 PF02468 PsbN: Photosystem II 22.0 81 0.0018 19.5 1.9 23 35-57 8-30 (43)
62 PF05545 FixQ: Cbb3-type cytoc 21.9 23 0.0005 22.2 -0.5 9 49-57 25-33 (49)
63 PF05170 AsmA: AsmA family; I 21.8 5.3E+02 0.011 24.5 8.5 52 58-123 439-490 (604)
64 PF08956 DUF1869: Domain of un 21.8 96 0.0021 20.6 2.3 20 83-102 5-24 (60)
65 PF09604 Potass_KdpF: F subuni 21.7 23 0.0005 19.3 -0.5 18 40-57 6-23 (25)
66 PTZ00370 STEVOR; Provisional 21.1 20 0.00044 31.4 -1.2 18 35-52 261-278 (296)
67 PF13396 PLDc_N: Phospholipase 20.0 1.1E+02 0.0024 18.5 2.3 15 43-57 32-46 (46)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=3.7e-36 Score=252.08 Aligned_cols=203 Identities=18% Similarity=0.284 Sum_probs=167.2
Q ss_pred CCCccccccccccccCCCCC---CCcchhhhHHHHHHHHHHHHHHHHheeeeEEEecCCcEEEEEeEEEeeeecCC----
Q 039379 3 LPIPKSAVHIQSSASQPHSN---SHSSYFVRRLIIALVLLFVLASVISSIAWLIVHPLPPVFTVNSFTVSNFTLLN---- 75 (223)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~i~~~i~~lvlrP~~P~~~V~~~~v~~~~~~~---- 75 (223)
-|++|++.+..+-|++-.+. .+|+++++||++++.+++++++++++++|++|||++|+|+|+++++++|++++
T Consensus 8 ~p~a~~~~~~~~d~~~~~~~~~~~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~ 87 (219)
T PLN03160 8 RPLAPAAFRLRSDEEEATNHLKKTRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTL 87 (219)
T ss_pred CCCCCCcccccCchhhcCcchhccccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCC
Confidence 49999999998777753322 35666666666666666666777777889999999999999999999999864
Q ss_pred -CeeEEEEEEEEEEeCCCCeeEEEECCCceEEEEECCcceeEEEEEeeceEEeCCCeEEEeEEEEecccccCChhhHHhh
Q 039379 76 -SRVKGDYELVVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAWMGPLCLEKMGQQRQSPRFRSDFCGPLHAGEFNEM 154 (223)
Q Consensus 76 -~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~~~lg~~~lp~f~q~~~~~t~v~~~l~~~~~~~l~~~~~~~l 154 (223)
+.+|++++++++++|||+ ++++|+++ ++.++|+|+. +|.+.+|+|+|++++++.+++++... ...+.. ..+|
T Consensus 88 ~~~~n~tl~~~v~v~NPN~-~~~~Y~~~-~~~v~Y~g~~--vG~a~~p~g~~~ar~T~~l~~tv~~~-~~~~~~--~~~L 160 (219)
T PLN03160 88 RPGTNITLIADVSVKNPNV-ASFKYSNT-TTTIYYGGTV--VGEARTPPGKAKARRTMRMNVTVDII-PDKILS--VPGL 160 (219)
T ss_pred ceeEEEEEEEEEEEECCCc-eeEEEcCe-EEEEEECCEE--EEEEEcCCcccCCCCeEEEEEEEEEE-eceecc--chhH
Confidence 378889999999999999 89999999 9999999999 99999999999999999999987654 223322 2468
Q ss_pred hhhccCCceEEEEEEEEEEEEEEEeeeeecceeeEEEcceEEEeecCCccccceeecCCCCCCceecCC
Q 039379 155 SNDYGSKRMVSFNVIMRIRVRFGYRILPTKQSLMKVSCTNLVAEFSAAKEIHGKLKDTGGKNNCSVHHD 223 (223)
Q Consensus 155 ~~d~~s~g~v~~~v~v~~~vr~k~g~~~s~~~~~~v~C~~l~v~~~~~~~~~g~~~~~~~~~~C~v~~~ 223 (223)
.+|.. .|.++|+++.+.+++++++++.++++.++++|+ +.|++.+ ..+. .++|+.+.+
T Consensus 161 ~~D~~-~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~-v~V~~~~-----~~i~----~~~C~~~~~ 218 (219)
T PLN03160 161 LTDIS-SGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCT-MTVNITS-----QAIQ----GQKCKRHVD 218 (219)
T ss_pred HHHhh-CCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeE-EEEECCC-----CEEe----ccEeccccc
Confidence 89999 599999998888888889999999999999998 9998853 3343 588998743
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.37 E-value=4.4e-12 Score=92.78 Aligned_cols=98 Identities=19% Similarity=0.269 Sum_probs=70.7
Q ss_pred EEEEeCCCCeeEEEECCCceEEEEECCcceeEE-EEEeeceEEeCCCeEEEeEEEEecccccCChhhHHhhhhhccCCce
Q 039379 85 VVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIA-TAWMGPLCLEKMGQQRQSPRFRSDFCGPLHAGEFNEMSNDYGSKRM 163 (223)
Q Consensus 85 ~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~~~lg-~~~lp~f~q~~~~~t~v~~~l~~~~~~~l~~~~~~~l~~d~~s~g~ 163 (223)
+|+++|||. ++++|+++ ++.++|+|+. +| ....++|.|++++++.+.+.+..+ ...+ ...+.++. . |.
T Consensus 1 ~l~v~NPN~-~~i~~~~~-~~~v~~~g~~--v~~~~~~~~~~i~~~~~~~v~~~v~~~-~~~l----~~~l~~~~-~-~~ 69 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSI-EYDVYYNGQR--VGTGGSLPPFTIPARSSTTVPVPVSVD-YSDL----PRLLKDLL-A-GR 69 (101)
T ss_dssp EEEEEESSS-S-EEEEEE-EEEEEESSSE--EEEEEECE-EEESSSCEEEEEEEEEEE-HHHH----HHHHHHHH-H-TT
T ss_pred CEEEECCCc-eeEEEeCE-EEEEEECCEE--EECccccCCeEECCCCcEEEEEEEEEc-HHHH----HHHHHhhh-c-cc
Confidence 589999999 99999999 9999999999 99 899999999999999999887765 2222 34455554 2 55
Q ss_pred EEEEEEEEEEEEEEE-eeeeecceeeEEEcc
Q 039379 164 VSFNVIMRIRVRFGY-RILPTKQSLMKVSCT 193 (223)
Q Consensus 164 v~~~v~v~~~vr~k~-g~~~s~~~~~~v~C~ 193 (223)
..+++.+++++++++ +.+...++.+.++|+
T Consensus 70 ~~~~v~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 70 VPFDVTYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp SCEEEEEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred cceEEEEEEEEEEEEcccceeeeEEEeEEeE
Confidence 666776667777773 443334555555554
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.28 E-value=1.2e-05 Score=59.29 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=55.8
Q ss_pred eeEEEEEEEEEEeCCCCeeEEEECCCceEEEEECCcceeEEEEEee-ceEEeCCCeEEEeEEEEe
Q 039379 77 RVKGDYELVVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAWMG-PLCLEKMGQQRQSPRFRS 140 (223)
Q Consensus 77 ~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~~~lg~~~lp-~f~q~~~~~t~v~~~l~~ 140 (223)
..+.++.+.+++.|||. +.+.|+++ +..++|+|.. +|++..+ ++..++++++.+.+.+..
T Consensus 12 ~~~~~~~l~l~v~NPN~-~~l~~~~~-~y~l~~~g~~--v~~g~~~~~~~ipa~~~~~v~v~~~~ 72 (100)
T smart00769 12 GLEIEIVLKVKVQNPNP-FPIPVNGL-SYDLYLNGVE--LGSGEIPDSGTLPGNGRTVLDVPVTV 72 (100)
T ss_pred ceEEEEEEEEEEECCCC-CccccccE-EEEEEECCEE--EEEEEcCCCcEECCCCcEEEEEEEEe
Confidence 57889999999999999 99999999 9999999999 9999997 799999999999888775
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.48 E-value=0.0067 Score=51.37 Aligned_cols=82 Identities=12% Similarity=0.186 Sum_probs=59.6
Q ss_pred EecCCcEEEEEeEEEee--eecCCCeeEEEEEEEEEEeCCCCeeEEEECCCceEEEEECCcceeEEEEEeece-EEeCCC
Q 039379 54 VHPLPPVFTVNSFTVSN--FTLLNSRVKGDYELVVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAWMGPL-CLEKMG 130 (223)
Q Consensus 54 lrP~~P~~~V~~~~v~~--~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~~~lg~~~lp~f-~q~~~~ 130 (223)
+=|+.-.++-.++.... |+-+++.+..++.-.+.++|||. ..+.-.++ ++.+.|.... +|.+..... ..++++
T Consensus 96 LfPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF-y~V~Vt~~-s~qv~~~~~V--VG~~~~~~~~~I~Prs 171 (238)
T PF07092_consen 96 LFPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF-YPVTVTNL-SIQVLYMKTV--VGKGKNSNITVIGPRS 171 (238)
T ss_pred EeCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-EEEEEEeE-EEEEEEEEeE--EeeeEecceEEecccC
Confidence 33774433333333322 33334578999999999999998 99999999 9999999988 999877744 667787
Q ss_pred eEEEeEEEE
Q 039379 131 QQRQSPRFR 139 (223)
Q Consensus 131 ~t~v~~~l~ 139 (223)
.+.+..++.
T Consensus 172 ~~q~~~tV~ 180 (238)
T PF07092_consen 172 SKQVNYTVK 180 (238)
T ss_pred CceEEEEee
Confidence 777776554
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=96.84 E-value=0.0046 Score=55.64 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=29.6
Q ss_pred eEEEEEEEEEEeCCCCeeEEEECCCceEEEEECCcc
Q 039379 78 VKGDYELVVSIKNPNKKASLSIDRSDDVCLMYDKSA 113 (223)
Q Consensus 78 l~~~~~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~ 113 (223)
=..-|+++|.+.|||. +.|..+++ ++.||-+-..
T Consensus 346 qELmfdl~V~A~NPn~-~~V~I~d~-dldIFAKS~y 379 (387)
T PF12751_consen 346 QELMFDLTVEAFNPNW-FTVTIDDM-DLDIFAKSRY 379 (387)
T ss_pred ceEEEeeEEEEECCCe-EEEEeccc-eeeeEecCCc
Confidence 4557899999999999 99999999 9999876655
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=96.82 E-value=0.046 Score=43.18 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=61.1
Q ss_pred CCcEEEEEeEEEeeeecCCCeeEEEEEEEEEEeCCCCeeEEEECCCceEEEEECCcceeEEEEEee-ceEEeCCCeEEEe
Q 039379 57 LPPVFTVNSFTVSNFTLLNSRVKGDYELVVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAWMG-PLCLEKMGQQRQS 135 (223)
Q Consensus 57 ~~P~~~V~~~~v~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~~~lg~~~lp-~f~q~~~~~t~v~ 135 (223)
++|.+.--.+....... ....+-.++.++|||. +.+--... +..++-.|.+ +|.+..- ++..++++..++.
T Consensus 31 ~~p~ve~~ka~wGkvt~----s~~EiV~t~KiyNPN~-fPipVtgl-~y~vymN~Ik--i~eG~~~k~~~v~p~S~~tvd 102 (161)
T COG5608 31 KKPGVESMKAKWGKVTN----SETEIVGTLKIYNPNP-FPIPVTGL-QYAVYMNDIK--IGEGEILKGTTVPPNSRETVD 102 (161)
T ss_pred CCCCceEEEEEEEEEec----cceEEEEEEEecCCCC-cceeeece-EEEEEEcceE--eeccccccceEECCCCeEEEE
Confidence 45655555555544322 3457888999999999 99999999 9999999999 9997766 5999999999999
Q ss_pred EEEEec
Q 039379 136 PRFRSD 141 (223)
Q Consensus 136 ~~l~~~ 141 (223)
+.+..+
T Consensus 103 v~l~~d 108 (161)
T COG5608 103 VPLRLD 108 (161)
T ss_pred EEEEEe
Confidence 988765
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=94.68 E-value=0.34 Score=40.76 Aligned_cols=104 Identities=11% Similarity=0.031 Sum_probs=66.4
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHheeeeEEEecC--CcEEEEEeEEEee-------eecCC----CeeEEEEEEEE
Q 039379 20 HSNSHSSYFVRRLIIALVLLFVLASVISSIAWLIVHPL--PPVFTVNSFTVSN-------FTLLN----SRVKGDYELVV 86 (223)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~l~~~l~i~~~i~~lvlrP~--~P~~~V~~~~v~~-------~~~~~----~~l~~~~~~~l 86 (223)
--.+++.+||.|+|++++++++++++++++++=.=.|+ --.++++++.+.. +|++- ..-|.+. +.+
T Consensus 31 ~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~ 109 (219)
T PLN03160 31 TRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASF 109 (219)
T ss_pred cccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeE
Confidence 44778999999999999998988888888888777776 4566777766532 33321 0113333 334
Q ss_pred EEeCCCCeeEEEECCCceEEEEECCcceeEEEEEeeceEEeCCCeEE
Q 039379 87 SIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAWMGPLCLEKMGQQR 133 (223)
Q Consensus 87 ~~~NPN~~~~i~Y~~~~~~~v~Y~g~~~~lg~~~lp~f~q~~~~~t~ 133 (223)
.-. |..+.++|+.. .+.- .. +..+.++++.+...+.+.
T Consensus 110 ~Y~--~~~~~v~Y~g~-~vG~----a~--~p~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 110 KYS--NTTTTIYYGGT-VVGE----AR--TPPGKAKARRTMRMNVTV 147 (219)
T ss_pred EEc--CeEEEEEECCE-EEEE----EE--cCCcccCCCCeEEEEEEE
Confidence 433 34488999877 4433 23 555556666665555553
No 8
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=79.46 E-value=2.7 Score=35.88 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=32.0
Q ss_pred heeeeE----EEecC---CcEEEEEeEEEeeeec-C-------------CC-eeEEEEEEEEEEeCCCCeeEE
Q 039379 47 SSIAWL----IVHPL---PPVFTVNSFTVSNFTL-L-------------NS-RVKGDYELVVSIKNPNKKASL 97 (223)
Q Consensus 47 ~~i~~l----vlrP~---~P~~~V~~~~v~~~~~-~-------------~~-~l~~~~~~~l~~~NPN~~~~i 97 (223)
++.+|+ -|.|. ..+++=+.++++.-.. . ++ ++...=++++.++|||.++.=
T Consensus 53 alTiWIlkVm~Fs~dGmG~Lkit~~GirleG~sefl~pl~akei~Sr~~~~l~~~S~rnvtvnarn~~g~v~~ 125 (292)
T KOG3950|consen 53 ALTIWILKVMNFSPDGMGNLKITKKGIRLEGDSEFLQPLYAKEIHSRPGSPLYLQSARNVTVNARNPNGKVTG 125 (292)
T ss_pred HHHHHHHHhhccCcccccceEEccCcEEEechhhhhhhhhhhhhhcCCCCceEEEeccCeeEEccCCCCceee
Confidence 344565 25565 3566666666655321 0 12 677788999999999987643
No 9
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=73.68 E-value=8 Score=29.55 Aligned_cols=49 Identities=24% Similarity=0.393 Sum_probs=30.2
Q ss_pred HHHHHHHheee--eEEEecCCcEEEEEeEEEeeeecCCCeeEEEEEEEEEEeCCCCe
Q 039379 40 FVLASVISSIA--WLIVHPLPPVFTVNSFTVSNFTLLNSRVKGDYELVVSIKNPNKK 94 (223)
Q Consensus 40 ~~~l~i~~~i~--~lvlrP~~P~~~V~~~~v~~~~~~~~~l~~~~~~~l~~~NPN~~ 94 (223)
+++++++.+++ |+.-++++|.+.+......+ .....+-+-++++|--.+
T Consensus 13 ~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r------~~~gqyyVpF~V~N~gg~ 63 (122)
T TIGR02588 13 LILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER------MQTGQYYVPFAIHNLGGT 63 (122)
T ss_pred HHHHHHHHHHHHHhhccCCCCCeEEEeehheeE------EeCCEEEEEEEEEeCCCc
Confidence 33344444444 55667789999888777654 223346677777776553
No 10
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=64.66 E-value=17 Score=28.88 Aligned_cols=16 Identities=13% Similarity=-0.035 Sum_probs=9.7
Q ss_pred EEECCCceEEEEECCcc
Q 039379 97 LSIDRSDDVCLMYDKSA 113 (223)
Q Consensus 97 i~Y~~~~~~~v~Y~g~~ 113 (223)
-+|=.. ++.+.+.+..
T Consensus 78 ~rylkv-~i~L~~~~~~ 93 (162)
T PRK07021 78 DRVLYV-GLTLRLPDEA 93 (162)
T ss_pred ceEEEE-EEEEEECCHH
Confidence 466666 6666665554
No 11
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=62.75 E-value=62 Score=24.13 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=16.3
Q ss_pred EECCcceeEEE--EEeeceEEeCCCeEEEeEEEEe
Q 039379 108 MYDKSAAVIAT--AWMGPLCLEKMGQQRQSPRFRS 140 (223)
Q Consensus 108 ~Y~g~~~~lg~--~~lp~f~q~~~~~t~v~~~l~~ 140 (223)
.|++.+ +|. ..+|+ +...+..+..++..
T Consensus 71 ~~d~ae--VGrreV~vp~---~~~~~~~~~v~v~T 100 (112)
T PF14155_consen 71 DYDGAE--VGRREVLVPP---SGERTVRVTVTVRT 100 (112)
T ss_pred eCCCCE--EEEEEEEECC---CCCcEEEEEEEEEe
Confidence 467777 775 66666 34445555555543
No 12
>PF14927 Neurensin: Neurensin
Probab=60.02 E-value=10 Score=29.67 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=23.3
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHheeeeEEE
Q 039379 20 HSNSHSSYFVRRLIIALVLLFVLASVISSIAWLIV 54 (223)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~l~~~l~i~~~i~~lvl 54 (223)
.++.+.+..++..+.++-++++++|++++++-..+
T Consensus 34 ~~~~~w~s~~wkV~~i~g~l~Ll~Gi~~l~vgY~v 68 (140)
T PF14927_consen 34 PSPSRWSSVCWKVGFISGLLLLLLGIVALTVGYLV 68 (140)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 35566666666666666677778888877764433
No 13
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=59.53 E-value=26 Score=28.05 Aligned_cols=21 Identities=5% Similarity=0.263 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHheeeeEEE
Q 039379 34 IALVLLFVLASVISSIAWLIV 54 (223)
Q Consensus 34 ~~~~~l~~~l~i~~~i~~lvl 54 (223)
.++++.+++++..+.++|+..
T Consensus 22 liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 22 LIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 333444445555666667765
No 14
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.58 E-value=4.5 Score=31.98 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=23.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHheeeeEEEecC
Q 039379 25 SSYFVRRLIIALVLLFVLASVISSIAWLIVHPL 57 (223)
Q Consensus 25 ~~~~~~~~~~~~~~l~~~l~i~~~i~~lvlrP~ 57 (223)
|.++...+..++++++++++.+++.+|...+|.
T Consensus 2 Rkk~~~~i~ii~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 2 RKKHLIIIIIILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred CceEeeeehhHHHHHHHHHHHHHHHHhHhcCcc
Confidence 345556566666677777777888889888886
No 15
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=51.67 E-value=4.9 Score=29.85 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHhee
Q 039379 23 SHSSYFVRRLIIALVLLFVLASVISSI 49 (223)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~~l~i~~~i 49 (223)
.+|+|-.+++.++++.+++++.+++++
T Consensus 22 ~~~rR~~k~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 22 GRRRRPLKCLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp ---------------------------
T ss_pred cCcCCcchhHHHHHHHHHHHHHHHHHH
Confidence 345555566655655555555555544
No 16
>PRK05529 cell division protein FtsQ; Provisional
Probab=48.46 E-value=26 Score=29.97 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=26.9
Q ss_pred CcEEEEEeEEEeeeecCC--------------C--------------eeEEEEEEEEEEeCCCCeeEEEEC
Q 039379 58 PPVFTVNSFTVSNFTLLN--------------S--------------RVKGDYELVVSIKNPNKKASLSID 100 (223)
Q Consensus 58 ~P~~~V~~~~v~~~~~~~--------------~--------------~l~~~~~~~l~~~NPN~~~~i~Y~ 100 (223)
.|.|.|+.+.|++-...+ + .+-.-=++.++-+.||. +.|+-.
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~t-l~I~V~ 127 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGT-IVVRVV 127 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCE-EEEEEE
Confidence 589999999997644211 1 11223356778889997 777663
No 17
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=48.34 E-value=85 Score=24.22 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=36.8
Q ss_pred eeeeEEEec--CCcEEEEEeEEEeeeecCCCeeEEEEEEEEEEeCCCCeeEEEECCCceEEEEECCcc
Q 039379 48 SIAWLIVHP--LPPVFTVNSFTVSNFTLLNSRVKGDYELVVSIKNPNKKASLSIDRSDDVCLMYDKSA 113 (223)
Q Consensus 48 ~i~~lvlrP--~~P~~~V~~~~v~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~ 113 (223)
+++|.++.. +++..++.+.+- +.. +-.+.+..+++|-.+ ..+..=.+ ++.+..++..
T Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~--l~~-----~~~~~v~g~V~N~g~-~~i~~c~i-~~~l~~~~~~ 93 (149)
T PF09624_consen 35 FFGYYWLDKYLKKIELTLTSQKR--LQY-----SESFYVDGTVTNTGK-FTIKKCKI-TVKLYNDKQV 93 (149)
T ss_pred HHHHHHHhhhcCCceEEEeeeee--eee-----ccEEEEEEEEEECCC-CEeeEEEE-EEEEEeCCCc
Confidence 334444444 456666655443 333 346788899999998 67888778 8888776655
No 18
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=46.33 E-value=1.5e+02 Score=23.68 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=22.9
Q ss_pred EEEEEEeCCCCeeEEEECCCceEEEEECCcceeEEEEEeeceEEeC
Q 039379 83 ELVVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAWMGPLCLEK 128 (223)
Q Consensus 83 ~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~~~lg~~~lp~f~q~~ 128 (223)
-.++.+.||...+.=.....|.+....+++. .|...+-.-...+
T Consensus 56 v~~l~~~~~~~~~~~~~~~gd~~~~~~rnqp--~G~v~V~~V~~~p 99 (168)
T PF14221_consen 56 VRGLSVPDPEPLVADAIKEGDKTNIVIRNQP--AGQVTVKDVQVLP 99 (168)
T ss_pred EeeeecCCccHHHHHhccCCCEEEEeccCcc--ccceEEEEEEEEc
Confidence 3456677777632221444435666666666 6655544444433
No 19
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=44.69 E-value=1.3e+02 Score=23.93 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=26.7
Q ss_pred EEEEEEEEeCCCCeeEEEECCCceEEEEECCcceeEEEEEe
Q 039379 81 DYELVVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAWM 121 (223)
Q Consensus 81 ~~~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~~~lg~~~l 121 (223)
++.+.+.+.--|.++.+.|... -=+++-.|+. +++++.+
T Consensus 71 ~~~v~F~vtD~~~~v~V~Y~Gi-LPDLFREGQg-VVa~G~~ 109 (153)
T COG2332 71 SLKVSFVVTDGNKSVTVSYEGI-LPDLFREGQG-VVAEGQL 109 (153)
T ss_pred CcEEEEEEecCCceEEEEEecc-CchhhhcCCe-EEEEEEe
Confidence 3444444457777789999888 6677777777 5777766
No 20
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=43.10 E-value=1.4e+02 Score=22.31 Aligned_cols=66 Identities=11% Similarity=0.031 Sum_probs=38.1
Q ss_pred EEEEEeeceEEeCCCeEEE-eEEEEecccccCChhhHHhhhhhccCCceEEEEEEEEEEEEEEEeeeeecceee
Q 039379 116 IATAWMGPLCLEKMGQQRQ-SPRFRSDFCGPLHAGEFNEMSNDYGSKRMVSFNVIMRIRVRFGYRILPTKQSLM 188 (223)
Q Consensus 116 lg~~~lp~f~q~~~~~t~v-~~~l~~~~~~~l~~~~~~~l~~d~~s~g~v~~~v~v~~~vr~k~g~~~s~~~~~ 188 (223)
+|...+|+....+..+..+ +..+. -.+.+...++..++-.+..+.+.++ ++.+.++|.+..+...+
T Consensus 3 f~~~~lP~~~~~~~~~~~~~~~~l~-----i~d~~~f~~f~~~~~~~~~~~l~l~--g~~~~~~g~l~~~~i~~ 69 (125)
T PF12505_consen 3 FATLDLPQIKIKGNGTISIIDQTLT-----ITDQDAFTQFVTALLFNEEVTLTLR--GKTDTHLGGLPFSGIPF 69 (125)
T ss_pred eEEEECCCEEecCCceEEEeeeeEE-----ecCHHHHHHHHHHHHhCCcEEEEEE--EeeeEEEccEEEEEEee
Confidence 8899999999833333332 22222 1255667778887653455555555 55566677775443333
No 21
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=42.45 E-value=26 Score=30.20 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHheeeeEEEecCCcEEEEEeEEEeee
Q 039379 32 LIIALVLLFVLASVISSIAWLIVHPLPPVFTVNSFTVSNF 71 (223)
Q Consensus 32 ~~~~~~~l~~~l~i~~~i~~lvlrP~~P~~~V~~~~v~~~ 71 (223)
+...+...++++++.++++|...-++.|.|.++.+.+++=
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~Gn 70 (269)
T COG1589 31 IRLLIGLYLVLLLLVLVVLWVLILLSLPYFPIRKVSVSGN 70 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHheehhhhcCCccceEEEEecC
Confidence 3333444455555566677888889999999999998763
No 22
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=41.82 E-value=10 Score=30.13 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=25.6
Q ss_pred HHHHHHHheeeeEEEecCCcEEEEEeEEEeeeecCCCeeEEEEEEEEEEeCCCCeeEEEE
Q 039379 40 FVLASVISSIAWLIVHPLPPVFTVNSFTVSNFTLLNSRVKGDYELVVSIKNPNKKASLSI 99 (223)
Q Consensus 40 ~~~l~i~~~i~~lvlrP~~P~~~V~~~~v~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y 99 (223)
.++++++++++|+..|++.=.|-=.+-. .++++++|+-..++|
T Consensus 61 ~ill~il~lvf~~c~r~kktdfidSdGk-----------------vvtay~~n~~~~~w~ 103 (154)
T PF04478_consen 61 PILLGILALVFIFCIRRKKTDFIDSDGK-----------------VVTAYRSNKLTKWWY 103 (154)
T ss_pred HHHHHHHHhheeEEEecccCccccCCCc-----------------EEEEEcCchHHHHHH
Confidence 4445666677788888886554322222 256677776444555
No 23
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=41.43 E-value=41 Score=22.74 Aligned_cols=16 Identities=31% Similarity=0.748 Sum_probs=11.5
Q ss_pred HHHHHheeeeEEEecC
Q 039379 42 LASVISSIAWLIVHPL 57 (223)
Q Consensus 42 ~l~i~~~i~~lvlrP~ 57 (223)
+.+....+.|++++|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 3344556789999998
No 24
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=40.58 E-value=41 Score=24.60 Aligned_cols=24 Identities=13% Similarity=0.495 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHheeeeEE-Ee
Q 039379 32 LIIALVLLFVLASVISSIAWLI-VH 55 (223)
Q Consensus 32 ~~~~~~~l~~~l~i~~~i~~lv-lr 55 (223)
++.+++.++.++.++.+|.|++ +|
T Consensus 64 ili~lls~v~IlVily~IyYFVILR 88 (101)
T PF06024_consen 64 ILISLLSFVCILVILYAIYYFVILR 88 (101)
T ss_pred hHHHHHHHHHHHHHHhhheEEEEEe
Confidence 4444444444444445555554 44
No 25
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=39.60 E-value=20 Score=31.64 Aligned_cols=43 Identities=23% Similarity=0.528 Sum_probs=30.7
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHheeeeEE---EecCCcEEEEEe
Q 039379 22 NSHSSYFVRRLIIALVLLFVLASVISSIAWLI---VHPLPPVFTVNS 65 (223)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~~l~i~~~i~~lv---lrP~~P~~~V~~ 65 (223)
....++|+++++.-+++-+++.+++++++|.. +-|+.|++. ++
T Consensus 38 GRT~~sW~~IllfYivFY~~la~lf~~~~~~~~~tidp~~P~~~-~~ 83 (300)
T KOG3927|consen 38 GRTGSSWAKILLFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYK-DS 83 (300)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-cc
Confidence 34567788887766666666677766666654 679999999 44
No 26
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=39.17 E-value=1.7e+02 Score=23.44 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=26.6
Q ss_pred EEEEEEEEeCCCCeeEEEECCCceEEEEECCcceeEEEEEe
Q 039379 81 DYELVVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAWM 121 (223)
Q Consensus 81 ~~~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~~~lg~~~l 121 (223)
.+.+.+.+...+..+.+.|... -=+++=.|+. +++++.+
T Consensus 77 ~~~v~F~vtD~~~~v~V~Y~Gi-lPDlFrEG~g-VVveG~~ 115 (159)
T PRK13150 77 SLKVNFSLYDAEGSVTVSYEGI-LPDLFREGQG-VVVQGTL 115 (159)
T ss_pred CcEEEEEEEcCCcEEEEEEecc-CCccccCCCe-EEEEEEE
Confidence 3455666666677788888877 6666666666 4666666
No 27
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=38.65 E-value=21 Score=23.71 Aligned_cols=7 Identities=14% Similarity=-0.002 Sum_probs=3.5
Q ss_pred Ccchhhh
Q 039379 24 HSSYFVR 30 (223)
Q Consensus 24 ~~~~~~~ 30 (223)
+|+|.|+
T Consensus 27 ~RrRrc~ 33 (60)
T PF06072_consen 27 RRRRRCR 33 (60)
T ss_pred HHHHHHH
Confidence 4455455
No 28
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=35.91 E-value=75 Score=21.93 Aligned_cols=34 Identities=12% Similarity=0.002 Sum_probs=16.1
Q ss_pred cccccccCCCCCCCcchhhhHHHHHHHHHHHHHH
Q 039379 11 HIQSSASQPHSNSHSSYFVRRLIIALVLLFVLAS 44 (223)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 44 (223)
++-..+-.|..|...++..-+..++++++++-++
T Consensus 42 ~ivd~A~~P~~P~~P~~~lil~l~~~~Gl~lgi~ 75 (82)
T PF13807_consen 42 RIVDPAIVPDKPVSPKRALILALGLFLGLILGIG 75 (82)
T ss_pred eeccccccCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3333344455566666655544444444444333
No 29
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.80 E-value=31 Score=28.19 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=22.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHheeeeEEEecCCcEEEEEeEEE
Q 039379 26 SYFVRRLIIALVLLFVLASVISSIAWLIVHPLPPVFTVNSFTV 68 (223)
Q Consensus 26 ~~~~~~~~~~~~~l~~~l~i~~~i~~lvlrP~~P~~~V~~~~v 68 (223)
+.|-+ +|.+++.+.++++ ++++.+++.|+.|...+.+.+=
T Consensus 9 n~WKw-~f~iLLAln~l~~--~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 9 NYWKW-LFFILLALNTLLA--VLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred cHHHH-HHHHHHHHHHHHH--HHhheeeccCCCCCchhhccCc
Confidence 33444 3334333333332 4556677899997777666554
No 30
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=35.15 E-value=15 Score=27.65 Aligned_cols=10 Identities=0% Similarity=0.228 Sum_probs=6.7
Q ss_pred eeeEEEecCC
Q 039379 49 IAWLIVHPLP 58 (223)
Q Consensus 49 i~~lvlrP~~ 58 (223)
++|+.+||..
T Consensus 15 i~yf~iRPQk 24 (113)
T PRK06531 15 LIFFMQRQQK 24 (113)
T ss_pred HHHheechHH
Confidence 3466799864
No 31
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=34.07 E-value=46 Score=21.84 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=8.8
Q ss_pred HHheeeeEEEecC
Q 039379 45 VISSIAWLIVHPL 57 (223)
Q Consensus 45 i~~~i~~lvlrP~ 57 (223)
++++++|+.-||+
T Consensus 44 ~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 44 FIVVFVYLKTRPR 56 (56)
T ss_pred HHhheeEEeccCC
Confidence 3456678888874
No 32
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=32.24 E-value=83 Score=23.57 Aligned_cols=26 Identities=12% Similarity=0.255 Sum_probs=19.3
Q ss_pred eEEEEEEEEEEeCCCCeeEEEECCCceE
Q 039379 78 VKGDYELVVSIKNPNKKASLSIDRSDDV 105 (223)
Q Consensus 78 l~~~~~~~l~~~NPN~~~~i~Y~~~~~~ 105 (223)
=..++..++.+.||.. +++..... .+
T Consensus 98 ~g~~~~~~~~l~NPS~-~ti~lG~v-~~ 123 (125)
T PF12505_consen 98 DGINLNATVTLPNPSP-LTIDLGNV-TL 123 (125)
T ss_pred CcEEEEEEEEEcCCCe-EEEEeccE-EE
Confidence 3557788888999998 77776665 44
No 33
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=31.91 E-value=2.5e+02 Score=22.39 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=30.7
Q ss_pred EeEEEeeeecCCCeeE--EEEEEEEEEeCCCCeeEEEECCCceEEEEECCcceeEEEEEee
Q 039379 64 NSFTVSNFTLLNSRVK--GDYELVVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAWMG 122 (223)
Q Consensus 64 ~~~~v~~~~~~~~~l~--~~~~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~~~lg~~~lp 122 (223)
+.+++..+=..++... -++.+.+.+.--+..+.+.|..+ -=+++=.|+. +++++.+.
T Consensus 52 ~~~RlGG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~Y~Gi-lPDlFrEGqg-VVaeG~~~ 110 (155)
T PRK13159 52 QQFRLGGMVKAGSIQRAADSLKVSFTVIDKNAATQVEYTGI-LPDLFRDNQS-VIANGRMQ 110 (155)
T ss_pred CeEEEccEEecCcEEEcCCCcEEEEEEEcCCcEEEEEEccC-CCccccCCCe-EEEEEEEc
Confidence 4555555433333111 12333334444455688888877 5566666666 56776664
No 34
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=31.72 E-value=32 Score=31.21 Aligned_cols=7 Identities=0% Similarity=-0.396 Sum_probs=3.0
Q ss_pred CCCcchh
Q 039379 22 NSHSSYF 28 (223)
Q Consensus 22 ~~~~~~~ 28 (223)
|.+|.+.
T Consensus 13 ~~~~~~~ 19 (390)
T PRK15136 13 PVKKKGK 19 (390)
T ss_pred Ccccccc
Confidence 4444443
No 35
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=30.72 E-value=15 Score=22.05 Aligned_cols=11 Identities=18% Similarity=0.606 Sum_probs=5.7
Q ss_pred HHheeeeEEEe
Q 039379 45 VISSIAWLIVH 55 (223)
Q Consensus 45 i~~~i~~lvlr 55 (223)
+..+|+|+++.
T Consensus 23 imliif~f~le 33 (43)
T PF11395_consen 23 IMLIIFWFSLE 33 (43)
T ss_pred HHHHHHHHHHh
Confidence 34445666543
No 36
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=30.19 E-value=14 Score=32.68 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=9.9
Q ss_pred HHHHHHHHHheeeeEEEe
Q 039379 38 LLFVLASVISSIAWLIVH 55 (223)
Q Consensus 38 ~l~~~l~i~~~i~~lvlr 55 (223)
++++++.++++|+||+||
T Consensus 263 iaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 263 IAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445566677765
No 37
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=29.72 E-value=2e+02 Score=24.59 Aligned_cols=12 Identities=0% Similarity=-0.086 Sum_probs=9.3
Q ss_pred EEEEECCcceeEEE
Q 039379 105 VCLMYDKSAAVIAT 118 (223)
Q Consensus 105 ~~v~Y~g~~~~lg~ 118 (223)
..|.|+|.+ +|.
T Consensus 49 ~~V~~~Gv~--VG~ 60 (291)
T TIGR00996 49 SKVRVRGVP--VGK 60 (291)
T ss_pred CceEEcceE--EEE
Confidence 457888888 886
No 38
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=29.62 E-value=3.1e+02 Score=22.36 Aligned_cols=29 Identities=3% Similarity=-0.009 Sum_probs=21.2
Q ss_pred ecCCcEEEEEeEEEeeeecCCCeeEEEEEE
Q 039379 55 HPLPPVFTVNSFTVSNFTLLNSRVKGDYEL 84 (223)
Q Consensus 55 rP~~P~~~V~~~~v~~~~~~~~~l~~~~~~ 84 (223)
.+..|.|..++++...|+.++ .+++.+..
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G-~l~y~l~a 65 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEG-ALSYKLVA 65 (192)
T ss_pred CCCCCCEEEeccEEEEECCCC-CEEEEEEe
Confidence 356799999999999998865 44444444
No 39
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=29.60 E-value=82 Score=26.45 Aligned_cols=21 Identities=5% Similarity=0.181 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhe
Q 039379 28 FVRRLIIALVLLFVLASVISS 48 (223)
Q Consensus 28 ~~~~~~~~~~~l~~~l~i~~~ 48 (223)
..-.+|.++++++++++.+++
T Consensus 128 ~amLIClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 128 MAMLICLIIIAVLFLICTLLF 148 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555443
No 40
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=28.78 E-value=23 Score=20.64 Aligned_cols=15 Identities=7% Similarity=0.366 Sum_probs=7.7
Q ss_pred HHHHHHHHHheeeeE
Q 039379 38 LLFVLASVISSIAWL 52 (223)
Q Consensus 38 ~l~~~l~i~~~i~~l 52 (223)
+.+.+++++++++|+
T Consensus 10 ~vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 10 GVVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHH
Confidence 334445555556664
No 41
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=28.73 E-value=3.5e+02 Score=22.60 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=30.8
Q ss_pred CCeeEEEEEEEEEEeCCCCeeEEEE--CCCceEEEEECCcc
Q 039379 75 NSRVKGDYELVVSIKNPNKKASLSI--DRSDDVCLMYDKSA 113 (223)
Q Consensus 75 ~~~l~~~~~~~l~~~NPN~~~~i~Y--~~~~~~~v~Y~g~~ 113 (223)
+..+...-+.++.++-||+ +.+.+ +.. +..++|+|..
T Consensus 34 gqklq~~~~~~v~v~RPdk-lr~~~~gd~~-~~~~~yDGkt 72 (214)
T PF09865_consen 34 GQKLQFSSSGTVTVQRPDK-LRIDRRGDGA-DREFYYDGKT 72 (214)
T ss_pred CceEEEEEEEEEEEeCCCe-EEEEEEcCCc-ceEEEECCCE
Confidence 3478888899999999998 99999 344 7888899888
No 42
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=28.12 E-value=2e+02 Score=22.03 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=34.6
Q ss_pred CeeEEEEEEEEEEeCCCCeeEEEECCCceEEEEECCcc-eeEEEEEeeceEEeCCCeEEEeE
Q 039379 76 SRVKGDYELVVSIKNPNKKASLSIDRSDDVCLMYDKSA-AVIATAWMGPLCLEKMGQQRQSP 136 (223)
Q Consensus 76 ~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~-~~lg~~~lp~f~q~~~~~t~v~~ 136 (223)
.....+|+.+|++||.+.+-.+...+. .|.|+. ..+-+-.=.|...+|-.+..+-+
T Consensus 19 ~~~~~~Lt~tLSiRNtd~~~~i~i~~v-----~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV 75 (125)
T PF11322_consen 19 KHRPFNLTATLSIRNTDPTDPIYITSV-----DYYDTDGKLVRSYLDKPIYLKPLATTEFVV 75 (125)
T ss_pred CCceEeEEEEEEEEcCCCCCCEEEEEE-----EEECCCCeEhHHhcCCCeEcCCCceEEEEE
Confidence 355678999999999998766665444 343333 11333333367777777766544
No 43
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=27.80 E-value=88 Score=19.66 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHheeeeEEEecC
Q 039379 34 IALVLLFVLASVISSIAWLIVHPL 57 (223)
Q Consensus 34 ~~~~~l~~~l~i~~~i~~lvlrP~ 57 (223)
.++.+..++++++..-+|..|-|.
T Consensus 10 ~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 10 LAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred HHHHHHHHHHHHhhheeeeccCCc
Confidence 344555667888888889988774
No 44
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=27.66 E-value=47 Score=30.34 Aligned_cols=7 Identities=43% Similarity=0.648 Sum_probs=2.9
Q ss_pred cchhhhH
Q 039379 25 SSYFVRR 31 (223)
Q Consensus 25 ~~~~~~~ 31 (223)
|+.|.|.
T Consensus 296 r~~~~r~ 302 (387)
T PF12751_consen 296 RSWFSRF 302 (387)
T ss_pred ccHHhhh
Confidence 3444444
No 45
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=27.62 E-value=32 Score=27.45 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=11.1
Q ss_pred HHHHHHheeeeEEEecCC
Q 039379 41 VLASVISSIAWLIVHPLP 58 (223)
Q Consensus 41 ~~l~i~~~i~~lvlrP~~ 58 (223)
+++++++.++|+.+||-.
T Consensus 13 ~l~~~~~y~~W~~~rpV~ 30 (157)
T PF06092_consen 13 FLLACILYFLWLTLRPVE 30 (157)
T ss_pred HHHHHHHHhhhhccCCeE
Confidence 333333367798899853
No 46
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=27.14 E-value=57 Score=24.42 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=32.0
Q ss_pred eeeeEEEecC-CcEEEEEeEEEeeeecC--CCeeEEEEEEEEEEeCCCC----eeEEEECCC-ceEEEEECCcc
Q 039379 48 SIAWLIVHPL-PPVFTVNSFTVSNFTLL--NSRVKGDYELVVSIKNPNK----KASLSIDRS-DDVCLMYDKSA 113 (223)
Q Consensus 48 ~i~~lvlrP~-~P~~~V~~~~v~~~~~~--~~~l~~~~~~~l~~~NPN~----~~~i~Y~~~-~~~~v~Y~g~~ 113 (223)
+..++-+.|- .-+..|.+..-.+.-.. +..+. ...-++-+.|||. .+.++|++. +.+.+.|++..
T Consensus 15 ~~Y~~~y~PTNK~ql~v~~~~~~~~i~k~~d~~~~-~~~~t~lF~~~~~~~~~~v~l~Yds~~~~Vtv~~~~~k 87 (109)
T PF06129_consen 15 LCYFFNYYPTNKMQLAVRELNYENAIIKQQDDNLP-KLLNTVLFLNPDKPVSSQVILYYDSRSGTVTVAYKNKK 87 (109)
T ss_pred HHHHHhhccchHHHHhhcccchhhHHHhcccccCc-cceeeEEecCCCcccccceEEEEccCCCeEEEEECCcE
Confidence 3456667784 35555555433321111 11222 2445677888883 355666544 34455555444
No 47
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=27.07 E-value=68 Score=27.00 Aligned_cols=11 Identities=9% Similarity=0.051 Sum_probs=6.8
Q ss_pred eEEEecCCcEE
Q 039379 51 WLIVHPLPPVF 61 (223)
Q Consensus 51 ~lvlrP~~P~~ 61 (223)
+-++|||...-
T Consensus 180 fK~~K~K~~~~ 190 (218)
T PF14283_consen 180 FKFYKPKQEEK 190 (218)
T ss_pred EEEeccccccc
Confidence 33788886543
No 48
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.01 E-value=18 Score=27.70 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=8.2
Q ss_pred HHHHHHheeeeEEEe
Q 039379 41 VLASVISSIAWLIVH 55 (223)
Q Consensus 41 ~~l~i~~~i~~lvlr 55 (223)
-++|++++|+|++-|
T Consensus 76 GvIg~Illi~y~irR 90 (122)
T PF01102_consen 76 GVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555566666543
No 49
>CHL00020 psbN photosystem II protein N
Probab=25.54 E-value=1e+02 Score=19.10 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHheeeeEEEecC
Q 039379 35 ALVLLFVLASVISSIAWLIVHPL 57 (223)
Q Consensus 35 ~~~~l~~~l~i~~~i~~lvlrP~ 57 (223)
++.+..++++++..-+|..|-|.
T Consensus 8 ~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 8 AIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred HHHHHHHHHHhhheeeeeccCCc
Confidence 44455667788888889988774
No 50
>TIGR03726 strep_RK_lipo putative cross-wall-targeting lipoprotein signal. The YSIRK signal domain targets proteins to the cross-wall, or septum, of dividing Gram-positive bacterial. Lipoprotein signal motifs direct a characteristic N-terminal cleavage and lipid modification for membrane anchoring. This Streptococcal-only signal peptide variant appears to be a hybrid between the two, likely directing protein targeting of nascent surface lipoproteins to the cross-wall. Nearly all members of this family have the characteristic LPXTG cell wall anchor signal at the C-terminus.
Probab=25.13 E-value=1e+02 Score=18.12 Aligned_cols=23 Identities=35% Similarity=0.026 Sum_probs=15.9
Q ss_pred CCcchhhhHHHHHHHHHHHHHHH
Q 039379 23 SHSSYFVRRLIIALVLLFVLASV 45 (223)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~~l~i 45 (223)
.+++.-++-+|.+++...+++.+
T Consensus 3 FRKsK~~~tLCGa~Lgt~~~~~~ 25 (34)
T TIGR03726 3 FRKSKKYRTLCGAALGTAVTASV 25 (34)
T ss_pred chhhHHHHHHHHHHHHHHHHHHh
Confidence 46777888889887776554443
No 51
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=25.06 E-value=2.6e+02 Score=19.94 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=34.5
Q ss_pred eeEEEEEEEEEEeCCCCeeEEEE---CCCceEEEEECCcceeEE--EEEeeceEEeCCCeEEEeEEEE
Q 039379 77 RVKGDYELVVSIKNPNKKASLSI---DRSDDVCLMYDKSAAVIA--TAWMGPLCLEKMGQQRQSPRFR 139 (223)
Q Consensus 77 ~l~~~~~~~l~~~NPN~~~~i~Y---~~~~~~~v~Y~g~~~~lg--~~~lp~f~q~~~~~t~v~~~l~ 139 (223)
.+.-++++.++++||... .++- .=. ...+.|.|.. .. .........+++++..+...+.
T Consensus 12 ~vG~d~~v~v~~~N~~~~-~l~~v~~~l~-~~~v~ytG~~--~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSSE-PLRNVSLNLC-AFTVEYTGLT--RDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp BTTSEEEEEEEEEE-SSS--EECEEEEEE-EEEEECTTTE--EEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred cCCCCEEEEEEEEeCCcC-ccccceeEEE-EEEEEECCcc--cccEeEEEcceeeCCCCEEEEEEEEE
Confidence 456689999999999762 2221 112 3455777776 42 3444456677777777776664
No 52
>PHA02973 hypothetical protein; Provisional
Probab=24.86 E-value=1.4e+02 Score=21.96 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=31.2
Q ss_pred eeeEEEecC-CcEEEEEeEEEeeeecCCCeeEEEEEEEEEEeCCCCeeEEEECCCceEEEEECCc
Q 039379 49 IAWLIVHPL-PPVFTVNSFTVSNFTLLNSRVKGDYELVVSIKNPNKKASLSIDRSDDVCLMYDKS 112 (223)
Q Consensus 49 i~~lvlrP~-~P~~~V~~~~v~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~ 112 (223)
..|+-+.|. .-+..|....-.+ +.++ ....-++-+.||++. ... .+.++|+..
T Consensus 15 ~Y~fn~~pTNKmq~aV~~l~~e~--~~d~---p~~l~t~lF~~~~~~-----~~~-~v~~yyds~ 68 (102)
T PHA02973 15 CYFFNFKRTNKMDIGINPIKKIP--WSDN---DHIFVSSLFHNKDKY-----LTG-PMKLNYDPD 68 (102)
T ss_pred HHHhhccccchhhhhhhhccccc--ccCC---CceeEEEEecCCCCc-----ccc-ceEEEEcCC
Confidence 445667774 5677777666555 2222 246667888899873 334 555555433
No 53
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=24.70 E-value=39 Score=26.81 Aligned_cols=9 Identities=11% Similarity=0.109 Sum_probs=5.3
Q ss_pred CcchhhhHH
Q 039379 24 HSSYFVRRL 32 (223)
Q Consensus 24 ~~~~~~~~~ 32 (223)
+|++.|++.
T Consensus 128 kr~K~Cki~ 136 (159)
T PF06789_consen 128 KRSKVCKIF 136 (159)
T ss_pred HHHHHHHHH
Confidence 566666643
No 54
>PHA03093 EEV glycoprotein; Provisional
Probab=24.30 E-value=21 Score=29.15 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=13.8
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHheeeeEEE
Q 039379 24 HSSYFVRRLIIALVLLFVLASVISSIAWLIV 54 (223)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~~l~i~~~i~~lvl 54 (223)
+++|++.+|+-+ ++++-++.++++++.|+|
T Consensus 30 kk~r~i~i~~Ri-siiiSIlsL~~i~~~LAl 59 (185)
T PHA03093 30 KKVKCIGICIRI-SIIISILSLIAITATLAL 59 (185)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 667777755433 333333333333333433
No 55
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=24.10 E-value=61 Score=30.96 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHHheeeeEEEec
Q 039379 28 FVRRLIIALVLLFVLASVISSIAWLIVHP 56 (223)
Q Consensus 28 ~~~~~~~~~~~l~~~l~i~~~i~~lvlrP 56 (223)
.+|.++..+.+++++++++.++..++|.+
T Consensus 476 anK~LWIsvAliVLLAaLlSfLtg~~fq~ 504 (538)
T PF05781_consen 476 ANKVLWISVALIVLLAALLSFLTGLFFQR 504 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 44555555555555555555555555554
No 56
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.84 E-value=3.6e+02 Score=21.16 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=21.3
Q ss_pred EEEEEEeCCCCeeEEEECCCceEEEEECCcceeEEEEEee
Q 039379 83 ELVVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAWMG 122 (223)
Q Consensus 83 ~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~~~lg~~~lp 122 (223)
.+++.+...+..+.+.|+.. -=+.+=.|+. ++..+.+.
T Consensus 72 ~~~F~ltD~~~~i~V~Y~G~-lPd~F~eg~~-VVv~G~~~ 109 (148)
T PRK13254 72 TVRFVVTDGNATVPVVYTGI-LPDLFREGQG-VVAEGRLQ 109 (148)
T ss_pred EEEEEEEeCCeEEEEEECCC-CCccccCCCE-EEEEEEEC
Confidence 34444454566688888766 4444444544 46666653
No 57
>KOG1773 consensus Stress responsive protein [General function prediction only]
Probab=23.38 E-value=2.4e+02 Score=18.99 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=23.3
Q ss_pred CccccccccccccCCCCCCCcchhhhHHHHHHHHHHHHHHHHheeeeEEEecCC
Q 039379 5 IPKSAVHIQSSASQPHSNSHSSYFVRRLIIALVLLFVLASVISSIAWLIVHPLP 58 (223)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~i~~lvlrP~~ 58 (223)
+||.|+-.+...|.-+ -+++..+.++..+=|++=++.+...+++.
T Consensus 17 lPP~aV~l~~g~C~~~---------~~InilL~~L~~iPgiIhA~yii~~~~r~ 61 (63)
T KOG1773|consen 17 LPPLAVFLRRGGCTVD---------VLINILLTLLGFIPGIIHAIYIIFFRGRE 61 (63)
T ss_pred cCchheeeecCCCchh---------hHHHHHHHHHHHhHHHHhhEEEEEEecCC
Confidence 3566665555555443 12333334444455666666555666654
No 58
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=23.05 E-value=3.1e+02 Score=20.37 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=6.6
Q ss_pred EEEEEEEeCCCC
Q 039379 82 YELVVSIKNPNK 93 (223)
Q Consensus 82 ~~~~l~~~NPN~ 93 (223)
+..++.+.|-|.
T Consensus 55 y~Y~~~~yd~~G 66 (114)
T TIGR01655 55 YEYKLDAYDSSG 66 (114)
T ss_pred EEEEEEEECCCC
Confidence 555555555554
No 59
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.62 E-value=18 Score=31.66 Aligned_cols=19 Identities=37% Similarity=0.614 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHheeeeE
Q 039379 34 IALVLLFVLASVISSIAWL 52 (223)
Q Consensus 34 ~~~~~l~~~l~i~~~i~~l 52 (223)
++++++++.+.++++-+||
T Consensus 264 aalvllil~vvliiLYiWl 282 (295)
T TIGR01478 264 AALVLIILTVVLIILYIWL 282 (295)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444334334333454
No 60
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=22.58 E-value=1.3e+02 Score=24.59 Aligned_cols=18 Identities=11% Similarity=0.301 Sum_probs=12.0
Q ss_pred HHHHHheeeeEEEecCCc
Q 039379 42 LASVISSIAWLIVHPLPP 59 (223)
Q Consensus 42 ~l~i~~~i~~lvlrP~~P 59 (223)
++++++.+++.++.|..|
T Consensus 14 ~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 14 NLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHhheeeEEEccCCC
Confidence 344455566778888866
No 61
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=22.00 E-value=81 Score=19.54 Aligned_cols=23 Identities=17% Similarity=0.272 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHheeeeEEEecC
Q 039379 35 ALVLLFVLASVISSIAWLIVHPL 57 (223)
Q Consensus 35 ~~~~l~~~l~i~~~i~~lvlrP~ 57 (223)
++.+..++++++..-+|..|-|.
T Consensus 8 ~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 8 AIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred HHHHHHHHHHHHhhhhhheeCCC
Confidence 34455666777888889988763
No 62
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.87 E-value=23 Score=22.17 Aligned_cols=9 Identities=22% Similarity=0.213 Sum_probs=5.1
Q ss_pred eeeEEEecC
Q 039379 49 IAWLIVHPL 57 (223)
Q Consensus 49 i~~lvlrP~ 57 (223)
++|.+++|+
T Consensus 25 i~~w~~~~~ 33 (49)
T PF05545_consen 25 IVIWAYRPR 33 (49)
T ss_pred HHHHHHccc
Confidence 334456776
No 63
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=21.84 E-value=5.3e+02 Score=24.53 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=29.1
Q ss_pred CcEEEEEeEEEeeeecCCCeeEEEEEEEEEEeCCCCeeEEEECCCceEEEEECCcceeEEEEEeec
Q 039379 58 PPVFTVNSFTVSNFTLLNSRVKGDYELVVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAWMGP 123 (223)
Q Consensus 58 ~P~~~V~~~~v~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~~~lg~~~lp~ 123 (223)
+-++++.++++.++.+++ +.+.++++ +. .+.-+++ ++.+ |+|.. =|.+.+-.
T Consensus 439 ~~~l~~~~l~~~~l~i~~------~~~~~~~~--~G--~l~l~~l-~~~l-~~G~~--~~~~~ld~ 490 (604)
T PF05170_consen 439 DLTLSAGSLKANGLPISN------LKLQLKAK--DG--LLTLDPL-SAKL-YGGSL--SGSASLDA 490 (604)
T ss_pred eEEEEhhheEECCceecc------cEEEEEec--CC--eEEEeee-eEec-CCcEE--EEEEEEec
Confidence 445666666666666653 33333333 33 3445566 5555 77777 66666653
No 64
>PF08956 DUF1869: Domain of unknown function (DUF1869); InterPro: IPR015051 This domain is found in a set of hypothetical bacterial proteins. ; PDB: 1NEI_A.
Probab=21.80 E-value=96 Score=20.56 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=11.5
Q ss_pred EEEEEEeCCCCeeEEEECCC
Q 039379 83 ELVVSIKNPNKKASLSIDRS 102 (223)
Q Consensus 83 ~~~l~~~NPN~~~~i~Y~~~ 102 (223)
+++|++.|-|..+++.|+..
T Consensus 5 ~~~LTvTNn~NGVSVDk~~~ 24 (60)
T PF08956_consen 5 EFTLTVTNNNNGVSVDKEFA 24 (60)
T ss_dssp -EEEEEEETTT--EEEEEE-
T ss_pred eEEEEEEeCCCceEeecccC
Confidence 46788887666677777543
No 65
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=21.70 E-value=23 Score=19.33 Aligned_cols=18 Identities=11% Similarity=0.329 Sum_probs=9.1
Q ss_pred HHHHHHHheeeeEEEecC
Q 039379 40 FVLASVISSIAWLIVHPL 57 (223)
Q Consensus 40 ~~~l~i~~~i~~lvlrP~ 57 (223)
++.+++.+-.+|-.++|.
T Consensus 6 ~v~~~L~~YL~~aLl~PE 23 (25)
T PF09604_consen 6 IVAVALFVYLFYALLRPE 23 (25)
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 344444444445556775
No 66
>PTZ00370 STEVOR; Provisional
Probab=21.12 E-value=20 Score=31.37 Aligned_cols=18 Identities=44% Similarity=0.687 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHheeeeE
Q 039379 35 ALVLLFVLASVISSIAWL 52 (223)
Q Consensus 35 ~~~~l~~~l~i~~~i~~l 52 (223)
+++++++.+.++++-+||
T Consensus 261 alvllil~vvliilYiwl 278 (296)
T PTZ00370 261 ALVLLILAVVLIILYIWL 278 (296)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444434344333454
No 67
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=20.02 E-value=1.1e+02 Score=18.45 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=9.4
Q ss_pred HHHHheeeeEEEecC
Q 039379 43 ASVISSIAWLIVHPL 57 (223)
Q Consensus 43 l~i~~~i~~lvlrP~ 57 (223)
+-++..++|++++++
T Consensus 32 ~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 32 FPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHhheEEEeCC
Confidence 444555678887754
Done!