Query 039379
Match_columns 223
No_of_seqs 111 out of 768
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 15:22:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.4 6.1E-06 2.1E-10 65.9 12.9 100 57-170 43-143 (174)
2 1xo8_A AT1G01470; structural g 98.1 5.8E-06 2E-10 64.5 6.6 77 57-141 20-97 (151)
3 3but_A Uncharacterized protein 97.6 0.00061 2.1E-08 52.1 10.9 73 79-156 17-90 (136)
4 2knc_B Integrin beta-3; transm 31.3 19 0.00067 24.2 1.5 19 34-52 15-33 (79)
5 2k1a_A Integrin alpha-IIB; sin 29.0 35 0.0012 20.1 2.1 22 30-51 11-32 (42)
6 3p5s_A CD38 molecule; cyclic A 22.9 18 0.00061 30.4 0.0 11 48-58 27-37 (278)
7 3kdp_B Sodium/potassium-transp 22.9 21 0.00073 30.0 0.5 45 21-66 8-55 (286)
8 2l8s_A Integrin alpha-1; trans 22.7 38 0.0013 21.1 1.5 29 30-58 10-40 (54)
9 1nei_A Hypothetical protein YO 22.1 59 0.002 20.5 2.3 19 83-101 5-23 (60)
10 2l0d_A Cell surface protein; s 20.6 2.3E+02 0.008 20.0 7.0 40 78-123 17-56 (114)
11 2knc_A Integrin alpha-IIB; tra 20.6 56 0.0019 20.3 2.0 28 30-57 13-42 (54)
12 2k9j_B Integrin beta-3; transm 20.6 44 0.0015 19.7 1.5 18 34-51 14-31 (43)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.39 E-value=6.1e-06 Score=65.85 Aligned_cols=100 Identities=20% Similarity=0.186 Sum_probs=79.3
Q ss_pred CCcEEEEEeEEEeeeecCCCeeEEEEEEEEEEeCCCCeeEEEECCCceEEEEECCcceeEEEEEee-ceEEeCCCeEEEe
Q 039379 57 LPPVFTVNSFTVSNFTLLNSRVKGDYELVVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAWMG-PLCLEKMGQQRQS 135 (223)
Q Consensus 57 ~~P~~~V~~~~v~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~~~lg~~~lp-~f~q~~~~~t~v~ 135 (223)
+.|+++++++.+.+++.. ..+|.+.|+++|||. ..+.+..+ +..++-.|.. ++++.++ ++..++++++.+.
T Consensus 43 ~~PeV~v~~v~~~~~~l~----~~~~~l~LrV~NPN~-~pLpi~gi-~Y~L~vnG~~--lasG~s~~~~tIpa~g~~~v~ 114 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD----GVDYHAKVSVKNPYS-QSIPICQI-SYILKSATRT--IASGTIPDPGSLVGSGTTVLD 114 (174)
T ss_dssp CCCEEEEEEEEEEEECSS----SEEEEEEEEEEECSS-SCCBCCSE-EEEEEESSSC--EEEEEESCCCBCCSSEEEEEE
T ss_pred CCCEEEEEEeEEeccccc----eEEEEEEEEEECCCC-CCccccce-EEEEEECCEE--EEEEecCCCceECCCCcEEEE
Confidence 679999999999887775 478999999999999 99999999 9999999999 9999999 5899999999999
Q ss_pred EEEEecccccCChhhHHhhhhhccCCceEEEEEEE
Q 039379 136 PRFRSDFCGPLHAGEFNEMSNDYGSKRMVSFNVIM 170 (223)
Q Consensus 136 ~~l~~~~~~~l~~~~~~~l~~d~~s~g~v~~~v~v 170 (223)
+.++.. . ....++..++.....++.++++
T Consensus 115 Vpv~v~-~-----~~l~~~~~~l~~~~~i~Y~L~g 143 (174)
T 1yyc_A 115 VPVKVA-Y-----SIAVSLMKDMCTDWDIDYQLDI 143 (174)
T ss_dssp EEEEES-H-----HHHHHTCCCCCSSEEECEEEEE
T ss_pred EEEEEE-H-----HHHHHHHHhcCCCCccceEEEE
Confidence 887754 1 2223344555423444555443
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.09 E-value=5.8e-06 Score=64.51 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=67.3
Q ss_pred CCcEEEEEeEEEeeeecCCCeeEEEEEEEEEEeCCCCeeEEEECCCceEEEEECCcceeEEEEEee-ceEEeCCCeEEEe
Q 039379 57 LPPVFTVNSFTVSNFTLLNSRVKGDYELVVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAWMG-PLCLEKMGQQRQS 135 (223)
Q Consensus 57 ~~P~~~V~~~~v~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~~~lg~~~lp-~f~q~~~~~t~v~ 135 (223)
+.|+++++++.+.+++.. ..+|.+.++++|||. ..+.+..+ +..++-.|.. ++++.++ ++..++++++.+.
T Consensus 20 ~~P~v~v~~v~~~~~~~~----~~~~~~~l~V~NPN~-~~lpi~gi-~y~l~vng~~--lasG~~~~~~~ipa~g~~~v~ 91 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRD----SVEYLAKVSVTNPYS-HSIPICEI-SFTFHSAGRE--IGKGKIPDPGSLKAKDMTALD 91 (151)
T ss_dssp CSCCCBCSEEEECCCTTT----EECEEEEEEEECSSS-SCCCCEEE-EEEEESSSSC--EEEEEEEECCCCSSSSEEEEE
T ss_pred CCCEEEEEEeEEeccCcc----eeEEEEEEEEECCCC-CCcccccE-EEEEEECCEE--EEEEecCCCcEECCCCcEEEE
Confidence 579999999998876653 678999999999999 99999999 9999999999 9999998 6899999999988
Q ss_pred EEEEec
Q 039379 136 PRFRSD 141 (223)
Q Consensus 136 ~~l~~~ 141 (223)
+.++..
T Consensus 92 vpv~v~ 97 (151)
T 1xo8_A 92 IPVVVP 97 (151)
T ss_dssp ECCCEE
T ss_pred EEEEEE
Confidence 876543
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.64 E-value=0.00061 Score=52.07 Aligned_cols=73 Identities=8% Similarity=0.152 Sum_probs=59.7
Q ss_pred EEEEEEEEEEeCCCCeeEEEECCCceEEEEECCcceeEEEEEe-eceEEeCCCeEEEeEEEEecccccCChhhHHhhhh
Q 039379 79 KGDYELVVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAWM-GPLCLEKMGQQRQSPRFRSDFCGPLHAGEFNEMSN 156 (223)
Q Consensus 79 ~~~~~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~~~lg~~~l-p~f~q~~~~~t~v~~~l~~~~~~~l~~~~~~~l~~ 156 (223)
...|.+.|++.|||. ..+.++.+ +..+...|.. +|++.. ..+..++.+++.+.+.+..+ ...+.+.....+.+
T Consensus 17 ~t~~~~~l~V~NPN~-~~l~i~gl-~y~v~lng~~--la~G~s~~~~~I~~~g~~~v~v~~~i~-~~~l~~~~~~hi~n 90 (136)
T 3but_A 17 QTEIVALAKVRNEDV-VPIVVSGY-HYTIEMNGVK--VADGYENSPVTVKPASATTLKFSLRLN-NSFLREWWVTHIAN 90 (136)
T ss_dssp EEEEEEEEEEECCSS-SCEEEEEE-EEEEEETTEE--EEEEEECCCEEECTTCEEEEEEEEEEE-HHHHTTHHHHHHHT
T ss_pred EEEEEEEEEEeCCCC-cceeeece-EEEEEECCEE--EEeeeecCceEECCCCcEEEEEEEEEc-hHHhHHHHHHHhhc
Confidence 567999999999998 99999999 9999999999 999874 57999999989999888776 34555554444443
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.27 E-value=19 Score=24.21 Aligned_cols=19 Identities=11% Similarity=0.391 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHheeeeE
Q 039379 34 IALVLLFVLASVISSIAWL 52 (223)
Q Consensus 34 ~~~~~l~~~l~i~~~i~~l 52 (223)
..+++.++++|++++++|-
T Consensus 15 ~gvi~gilliGllllliwk 33 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566777777766663
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=29.04 E-value=35 Score=20.12 Aligned_cols=22 Identities=9% Similarity=0.356 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHheeee
Q 039379 30 RRLIIALVLLFVLASVISSIAW 51 (223)
Q Consensus 30 ~~~~~~~~~l~~~l~i~~~i~~ 51 (223)
..+..+++.-+++++++++++|
T Consensus 11 wiIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 11 WWVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555666666666
No 6
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=22.87 E-value=18 Score=30.40 Aligned_cols=11 Identities=0% Similarity=-0.188 Sum_probs=0.0
Q ss_pred eeeeEEEecCC
Q 039379 48 SIAWLIVHPLP 58 (223)
Q Consensus 48 ~i~~lvlrP~~ 58 (223)
+++-+.+.|+.
T Consensus 27 ~~~~~~~~~~~ 37 (278)
T 3p5s_A 27 GAIGIYKWHYS 37 (278)
T ss_dssp -----------
T ss_pred heeeEEeccCC
Confidence 33344444543
No 7
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=22.86 E-value=21 Score=30.03 Aligned_cols=45 Identities=9% Similarity=0.270 Sum_probs=30.2
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHheeeeEE---EecCCcEEEEEeE
Q 039379 21 SNSHSSYFVRRLIIALVLLFVLASVISSIAWLI---VHPLPPVFTVNSF 66 (223)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~i~~lv---lrP~~P~~~V~~~ 66 (223)
.+....+|.++++.-+++-.+++|++++.+|.. +.|..|++. +..
T Consensus 8 lGRT~~sW~~IllFYliFY~~La~lFa~~m~v~l~TLd~~~Pkyq-d~~ 55 (286)
T 3kdp_B 8 LGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQ-DRV 55 (286)
T ss_dssp SCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHGGGSCSCSSSCSCC-TTT
T ss_pred eCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCccc-CCC
Confidence 345566788887766666666666666655544 788889988 544
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=22.71 E-value=38 Score=21.13 Aligned_cols=29 Identities=7% Similarity=0.133 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHheeeeE--EEecCC
Q 039379 30 RRLIIALVLLFVLASVISSIAWL--IVHPLP 58 (223)
Q Consensus 30 ~~~~~~~~~l~~~l~i~~~i~~l--vlrP~~ 58 (223)
.++..++++.+++++++++++|- .||.+.
T Consensus 10 WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 44445555556666666667764 355443
No 9
>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Escherichia coli} SCOP: d.253.1.1
Probab=22.08 E-value=59 Score=20.54 Aligned_cols=19 Identities=16% Similarity=0.315 Sum_probs=14.8
Q ss_pred EEEEEEeCCCCeeEEEECC
Q 039379 83 ELVVSIKNPNKKASLSIDR 101 (223)
Q Consensus 83 ~~~l~~~NPN~~~~i~Y~~ 101 (223)
.++|++.|-|..+++.|+.
T Consensus 5 ~~~lTvTNnnnGVSVdk~~ 23 (60)
T 1nei_A 5 TYTVTVTNNSNGVSVDYET 23 (60)
T ss_dssp CEEEEEEETTTCCEEEEEC
T ss_pred eEEEEEEeCCCceEeeccc
Confidence 3678888888888888863
No 10
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=20.63 E-value=2.3e+02 Score=20.04 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=27.2
Q ss_pred eEEEEEEEEEEeCCCCeeEEEECCCceEEEEECCcceeEEEEEeec
Q 039379 78 VKGDYELVVSIKNPNKKASLSIDRSDDVCLMYDKSAAVIATAWMGP 123 (223)
Q Consensus 78 l~~~~~~~l~~~NPN~~~~i~Y~~~~~~~v~Y~g~~~~lg~~~lp~ 123 (223)
-+-...+++.++|.-.... ... .+.++.+|.. ++...+++
T Consensus 17 ~~~~~ti~atVkN~G~~~a---~~~-~V~ly~~g~~--v~t~~v~~ 56 (114)
T 2l0d_A 17 PNTVNTMTATIENQGNKDS---TSF-NVSLLVDGIV--VDTQTVTS 56 (114)
T ss_dssp TTSEEEEEEEEEECSSSCB---CCE-EEEEEETTEE--EEEEEESC
T ss_pred CCCeEEEEEEEEECCCCCC---CCE-EEEEEECCEE--Ecceeccc
Confidence 3446788889999876322 445 6776678887 88876654
No 11
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.61 E-value=56 Score=20.33 Aligned_cols=28 Identities=7% Similarity=0.229 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHheeeeE--EEecC
Q 039379 30 RRLIIALVLLFVLASVISSIAWL--IVHPL 57 (223)
Q Consensus 30 ~~~~~~~~~l~~~l~i~~~i~~l--vlrP~ 57 (223)
..+..++++.+++++++++++|- .||.+
T Consensus 13 wiIi~svl~GLllL~li~~~LwK~GFFkR~ 42 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWKVGFFKRN 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 44445555556666666666664 34444
No 12
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=20.56 E-value=44 Score=19.68 Aligned_cols=18 Identities=11% Similarity=0.451 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHheeee
Q 039379 34 IALVLLFVLASVISSIAW 51 (223)
Q Consensus 34 ~~~~~l~~~l~i~~~i~~ 51 (223)
...++.++++|++.+++|
T Consensus 14 ~gvi~~ivliGl~lLliw 31 (43)
T 2k9j_B 14 LSVMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555666777776665
Done!