BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039380
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 2/143 (1%)
Query: 180 NQPLDPEVDVNCLLSIGVRTRLQPQLPQEYVGNIVQRGRDNESESGKGATWNLTTNPLTE 239
N PL P N L+ RTR +E V+ + + K W L+ + E
Sbjct: 311 NPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRXKDEEWILSGSWFKE 370
Query: 240 YGT--GSNASAISNSPRFDVYGNDFGWGKPIAVTGGSASKRNGKATTSARVEKASADIEI 297
Y + +++ SP+ D+Y DFGWG+P + S +G + + ++ + + D+EI
Sbjct: 371 YDKVDAKRSLSVAGSPKLDLYAADFGWGRPEKLEFVSIDNDDGISXSLSKSKDSDGDLEI 430
Query: 298 RLSVETLQRLQNDAQFMDAASVI 320
LS+ + A F S +
Sbjct: 431 GLSLSKTRXNAFAAXFTHGISFL 453
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 29 RALDLLYPLAGRFATTYHHHDNTISFFVDCNTAGVDFVHVAADGV-----SVADILEPIY 83
RAL YP+AGR D I ++CN GV FV +DGV A LE
Sbjct: 67 RALVPFYPMAGRLK---RDEDGRIE--IECNGEGVLFVEAESDGVVDDFGDFAPTLELRR 121
Query: 84 VLENIEG----TSKTFLEVQVAKLK-NRIFLACSTNISLVDGTSIWQFFQSWSEIRRGFS 138
++ ++ +S L +QV K + L DG S F SWS++ RG
Sbjct: 122 LIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGL- 180
Query: 139 FDCIATSISTPPVLECWFPRNIDCP 163
++ PP ++ R D P
Sbjct: 181 ------DVTLPPFIDRTLLRARDPP 199
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 254 RFDVYGNDFGWGKPIAVTGGSASKRNGKATTSARVEKASADIEIRLSVETLQRLQN 309
R ++ DFGWG+PI + G + + S + I L E ++ Q+
Sbjct: 379 RLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 434
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 29 RALDLLYPLAGRFATTYHHHDNTISFFVDCNTAGVDFVHVAADGV-----SVADILEPIY 83
RAL YP+AGR D I ++CN GV FV +DGV A LE
Sbjct: 67 RALVPFYPMAGRLK---RDEDGRIE--IECNGEGVLFVEAESDGVVDDFGDFAPTLELRR 121
Query: 84 VLENIEG----TSKTFLEVQVAKLK-NRIFLACSTNISLVDGTSIWQFFQSWSEIRRGFS 138
++ ++ +S L +QV K + L DG S F SWS++ RG
Sbjct: 122 LIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARGL- 180
Query: 139 FDCIATSISTPPVLECWFPRNIDCP 163
++ PP ++ R D P
Sbjct: 181 ------DVTLPPFIDRTLLRARDPP 199
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 254 RFDVYGNDFGWGKPIAVTGGSASKRNGKATTSARVEKASADIEIRLSVETLQRLQN 309
R ++ DFGWG+PI + G + + S + I L E ++ Q+
Sbjct: 379 RLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 434
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 29 RALDLLYPLAGRFATTYHHHDNTISFFVDCNTAGVDFVHVAADGV-----SVADILEPIY 83
RAL YP+AGR D I ++CN GV FV +DGV A LE
Sbjct: 64 RALVPFYPMAGRLK---RDEDGRIE--IECNGEGVLFVEAESDGVVDDFGDFAPTLELRR 118
Query: 84 VLENIEG----TSKTFLEVQVAKLK-NRIFLACSTNISLVDGTSIWQFFQSWSEIRRGFS 138
++ ++ +S L +QV K + L DG S F SWS++ RG
Sbjct: 119 LIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGL- 177
Query: 139 FDCIATSISTPPVLECWFPRNIDCP 163
++ PP ++ R D P
Sbjct: 178 ------DVTLPPFIDRTLLRARDPP 196
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 254 RFDVYGNDFGWGKPIAVTGGSASKRNGKATTSARVEKASADIEIRLSVETLQRLQN 309
R ++ DFGWG+PI + G + + S + I L E ++ Q+
Sbjct: 376 RLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 431
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/348 (20%), Positives = 117/348 (33%), Gaps = 117/348 (33%)
Query: 29 RALDLLYPLAGRFATTYHHHDNTISFFVDCNTAGVDFVHVAADGVSVADILEPIYVLENI 88
+ L YPLAGR ++ VDCN +GV FV ++ ++ + LE +
Sbjct: 69 KVLTHFYPLAGRI---------NVNSSVDCNDSGVPFVEARVQA-QLSQAIQNVVELEKL 118
Query: 89 E----------GTSKTFLEVQVAKLKNRIF----LACSTNIS--LVDGTSIWQFFQSWSE 132
+ G + +V +A +K F A N+S + D S+ F +W+
Sbjct: 119 DQYLPSAAYPGGKIEVNEDVPLA-VKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTA 177
Query: 133 IRRGFS------FDCIATSISTPPVLECWFPRNIDCPILIPKEKLSLQQLVACNQPL--- 183
RG + FD A PPV N P L+P E + +++ V + +
Sbjct: 178 TCRGETEIVLPNFDLAARHF--PPV------DNTPSPELVPDENVVMKRFVFDKEKIGAL 229
Query: 184 ------------------------DPEVDVN-----------CLLSIGVRTRLQPQLPQE 208
+DV + ++ +R+R+ P LP
Sbjct: 230 RAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHY 289
Query: 209 YVGNIV---------------------------QRGRDNESESGKGAT--WNLTTNPLTE 239
+GNI + D+ E KG T + L L
Sbjct: 290 AMGNIATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYELEPQELLS 349
Query: 240 YGTGSNASAISNSPRFDVYGNDFGWGKPIAVTGGSASKRNGKATTSAR 287
+ + R Y DFGWGKP++ + KRN R
Sbjct: 350 FTSWC---------RLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTR 388
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 30/139 (21%)
Query: 195 IGVRTRLQPQLPQEYVGNIVQR-----------GRDNESESGKGATWNL----------- 232
I R R++P +P Y GN V G++ + K NL
Sbjct: 302 IDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGV 361
Query: 233 ------TTNPLTEYGTGSNASAISNSPRFDVYGNDFGWGKPIAVTGGSASKRNGKATTSA 286
+ N L G + + +S +P+ Y DFGWGKP + S + S
Sbjct: 362 LKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDFGWGKPKKLETVSIDHNGAISINSC 421
Query: 287 RVEKASADIEIRLSVETLQ 305
+ +++ D+EI + + Q
Sbjct: 422 K--ESNEDLEIGVCISATQ 438
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 30/141 (21%)
Query: 193 LSIGVRTRLQPQLPQEYVGNIVQR-----------GRDNESESGKGATWNL--------- 232
I R R +P +P Y GN V G++ + K NL
Sbjct: 300 FPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKD 359
Query: 233 --------TTNPLTEYGTGSNASAISNSPRFDVYGNDFGWGKPIAVTGGSASKRNGKATT 284
+ N L G + + +S +P+ Y DFGWGKP + S +
Sbjct: 360 GVLKDDXESFNDLVSEGXPTTXTWVSGTPKLRFYDXDFGWGKPKKLETVSIDHNGAISIN 419
Query: 285 SARVEKASADIEIRLSVETLQ 305
S + +++ D+EI + + Q
Sbjct: 420 SCK--ESNEDLEIGVCISATQ 438
>pdb|3UQY|L Chain L, H2-Reduced Structure Of E. Coli Hydrogenase-1
pdb|3UQY|M Chain M, H2-Reduced Structure Of E. Coli Hydrogenase-1
pdb|3USC|L Chain L, Crystal Structure Of E. Coli Hydrogenase-1 In A
Ferricyanide-Oxidized Form
pdb|3USC|M Chain M, Crystal Structure Of E. Coli Hydrogenase-1 In A
Ferricyanide-Oxidized Form
pdb|3USE|L Chain L, Crystal Structure Of E. Coli Hydrogenase-1 In Its
As-Isolated Form
pdb|3USE|M Chain M, Crystal Structure Of E. Coli Hydrogenase-1 In Its
As-Isolated Form
pdb|4GD3|L Chain L, Structure Of E. Coli Hydrogenase-1 In Complex With
Cytochrome B
pdb|4GD3|M Chain M, Structure Of E. Coli Hydrogenase-1 In Complex With
Cytochrome B
pdb|4GD3|J Chain J, Structure Of E. Coli Hydrogenase-1 In Complex With
Cytochrome B
pdb|4GD3|K Chain K, Structure Of E. Coli Hydrogenase-1 In Complex With
Cytochrome B
Length = 582
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 114 NISLVDGTSIWQFFQSWSEIRRGFSFDCIATSISTPPV 151
N+ + D +I QF + WSEI G S C+ + + P +
Sbjct: 273 NVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDI 310
>pdb|1XIW|B Chain B, Crystal Structure Of Human Cd3-ED DIMER IN COMPLEX WITH A
Ucht1 Single-Chain Antibody Fragment
pdb|1XIW|F Chain F, Crystal Structure Of Human Cd3-ED DIMER IN COMPLEX WITH A
Ucht1 Single-Chain Antibody Fragment
Length = 79
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 22/26 (84%)
Query: 96 LEVQVAKLKNRIFLACSTNISLVDGT 121
+++ + +L++R+F+ C+T+I+ V+GT
Sbjct: 1 MKIPIEELEDRVFVNCNTSITWVEGT 26
>pdb|3D8H|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From
Cryptosporidium Parvum, Cgd7_4270
pdb|3D8H|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From
Cryptosporidium Parvum, Cgd7_4270
Length = 267
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 133 IRRGFSFDCIATSISTPPVLECWFPR----NIDCPIL 165
+ +GF FD + TS+ ++ W NI+CPI+
Sbjct: 63 LEKGFKFDVVYTSVLKRAIMTTWTVLKELGNINCPII 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,102,479
Number of Sequences: 62578
Number of extensions: 370906
Number of successful extensions: 917
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 32
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)