Query 039381
Match_columns 138
No_of_seqs 124 out of 1375
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 15:24:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 99.7 1.3E-17 4.4E-22 142.8 11.0 125 5-130 674-804 (823)
2 1pb7_A N-methyl-D-aspartate re 99.7 5.4E-17 1.9E-21 124.6 9.8 92 2-94 200-292 (292)
3 1yae_A Glutamate receptor, ion 99.7 3.2E-16 1.1E-20 120.7 10.3 103 3-108 203-306 (312)
4 3g3k_A Glutamate receptor, ion 99.7 3.9E-16 1.3E-20 116.2 9.2 89 3-93 169-258 (259)
5 2rc8_A Glutamate [NMDA] recept 99.6 1.5E-15 5.2E-20 116.3 8.8 89 4-93 200-293 (294)
6 4h5g_A Amino acid ABC superfam 99.6 4.1E-15 1.4E-19 110.5 10.0 88 2-89 147-238 (243)
7 3i6v_A Periplasmic His/Glu/Gln 99.6 5.7E-15 2E-19 108.7 10.2 94 2-95 128-224 (232)
8 4gvo_A LMO2349 protein; struct 99.6 3E-15 1E-19 111.2 6.5 87 4-90 149-237 (243)
9 2a5s_A N-methyl-D-aspartate re 99.6 1.2E-14 4.1E-19 110.8 9.7 86 6-93 193-283 (284)
10 3del_B Arginine binding protei 99.6 2.3E-14 7.7E-19 105.1 10.0 93 1-94 140-238 (242)
11 3kzg_A Arginine 3RD transport 99.5 1.5E-14 5.1E-19 106.1 7.4 89 2-90 134-232 (237)
12 3hv1_A Polar amino acid ABC up 99.5 7.4E-14 2.5E-18 104.3 10.9 94 1-94 157-254 (268)
13 1mqi_A Glutamate receptor 2; G 99.5 6.3E-14 2.2E-18 104.4 9.7 91 2-93 168-262 (263)
14 2v3u_A Glutamate receptor delt 99.5 8.5E-14 2.9E-18 103.2 10.1 90 3-93 172-264 (265)
15 4f3p_A Glutamine-binding perip 99.5 7.4E-14 2.5E-18 103.2 9.5 91 2-92 154-246 (249)
16 3k4u_A Binding component of AB 99.5 1.3E-13 4.6E-18 101.4 10.4 89 2-90 139-230 (245)
17 3h7m_A Sensor protein; histidi 99.5 3.3E-13 1.1E-17 97.8 9.4 88 2-89 141-231 (234)
18 1ii5_A SLR1257 protein; membra 99.5 3.9E-13 1.3E-17 97.4 9.8 89 2-90 138-228 (233)
19 3qax_A Probable ABC transporte 99.4 7.3E-13 2.5E-17 98.0 10.8 90 1-91 161-256 (268)
20 4eq9_A ABC transporter substra 99.4 9.5E-13 3.2E-17 96.2 10.1 89 6-94 149-241 (246)
21 1wdn_A GLNBP, glutamine bindin 99.4 8E-13 2.7E-17 95.1 9.4 89 2-90 133-224 (226)
22 3kbr_A Cyclohexadienyl dehydra 99.4 4.8E-13 1.6E-17 97.8 8.3 85 2-88 149-237 (239)
23 3tql_A Arginine-binding protei 99.4 5.3E-13 1.8E-17 96.1 8.2 86 2-87 134-227 (227)
24 2y7i_A STM4351; arginine-bindi 99.4 1.1E-12 3.9E-17 94.8 8.8 86 2-88 136-228 (229)
25 2yln_A Putative ABC transporte 99.4 2.1E-12 7.3E-17 97.9 10.3 89 2-90 186-279 (283)
26 4i62_A Amino acid ABC transpor 99.4 1.7E-12 5.7E-17 96.1 9.1 87 2-89 174-265 (269)
27 2vha_A Periplasmic binding tra 99.4 3.7E-12 1.3E-16 96.0 9.9 89 2-90 158-250 (287)
28 2yjp_A Putative ABC transporte 99.4 3.4E-12 1.2E-16 97.0 9.7 87 2-89 188-277 (291)
29 1xt8_A Putative amino-acid tra 99.4 2E-12 6.9E-17 97.9 8.1 87 2-89 177-266 (292)
30 2pyy_A Ionotropic glutamate re 99.3 2.5E-12 8.5E-17 92.6 8.1 89 2-90 134-224 (228)
31 1lst_A Lysine, arginine, ornit 99.3 2.7E-12 9.2E-17 93.6 8.1 90 2-91 137-235 (239)
32 3mpk_A Virulence sensor protei 99.3 6.4E-12 2.2E-16 94.1 8.3 87 2-89 163-253 (267)
33 2pvu_A ARTJ; basic amino acid 99.3 1.5E-11 5.3E-16 92.0 10.2 90 1-90 171-264 (272)
34 2iee_A ORF2, probable ABC tran 99.3 1.7E-11 5.8E-16 92.0 8.3 88 2-90 154-249 (271)
35 4dz1_A DALS D-alanine transpor 99.3 2.2E-11 7.5E-16 90.7 8.8 87 2-89 167-254 (259)
36 2q88_A EHUB, putative ABC tran 99.2 3.7E-11 1.3E-15 88.7 8.4 86 2-88 149-240 (257)
37 2v25_A Major cell-binding fact 98.9 7.3E-10 2.5E-14 81.1 5.2 82 2-87 176-258 (259)
38 3p7i_A PHND, subunit of alkylp 98.5 2.9E-07 9.9E-12 71.9 8.8 85 4-88 162-252 (321)
39 3n5l_A Binding protein compone 98.5 2.3E-07 7.8E-12 71.9 7.6 84 5-88 154-243 (310)
40 2f5x_A BUGD; periplasmic bindi 97.8 0.00019 6.4E-09 55.9 10.6 85 3-87 169-276 (312)
41 2qpq_A Protein BUG27; alpha/be 97.8 0.00015 5.2E-09 56.0 9.7 86 2-87 159-267 (301)
42 2ozz_A Hypothetical protein YH 97.8 4.9E-05 1.7E-09 57.1 6.1 65 2-71 137-211 (231)
43 2dvz_A BUGE, putative exported 97.7 0.00028 9.6E-09 54.9 9.9 86 2-87 172-280 (314)
44 2x26_A Periplasmic aliphatic s 96.7 0.0077 2.6E-07 45.2 8.5 83 5-89 138-233 (308)
45 3un6_A Hypothetical protein sa 96.7 0.0043 1.5E-07 47.7 7.0 83 7-89 190-284 (341)
46 3ksx_A Nitrate transport prote 94.6 0.11 3.8E-06 39.2 7.3 82 7-88 166-258 (324)
47 3qsl_A Putative exported prote 93.9 0.15 5.1E-06 38.3 6.5 36 2-37 170-205 (346)
48 1zbm_A Hypothetical protein AF 93.2 0.15 5E-06 37.6 5.4 71 5-76 130-210 (280)
49 3ix1_A N-formyl-4-amino-5-amin 91.9 0.22 7.4E-06 37.1 4.9 59 2-61 38-97 (302)
50 2g29_A Nitrate transport prote 91.7 0.38 1.3E-05 38.1 6.3 86 3-89 189-291 (417)
51 3ksx_A Nitrate transport prote 91.7 0.45 1.5E-05 35.8 6.4 58 2-61 62-122 (324)
52 3un6_A Hypothetical protein sa 91.3 0.46 1.6E-05 36.1 6.2 58 2-61 86-144 (341)
53 2xxp_A CPS2A; replication, pep 91.3 0.21 7.3E-06 39.9 4.4 34 2-35 65-98 (398)
54 3qsl_A Putative exported prote 91.0 0.74 2.5E-05 34.3 7.1 58 2-60 68-126 (346)
55 4esw_A Pyrimidine biosynthesis 90.7 0.45 1.5E-05 36.3 5.6 59 2-61 42-101 (342)
56 3up9_A Putative uncharacterize 90.3 0.51 1.8E-05 35.4 5.5 76 1-79 38-131 (245)
57 3gxa_A Outer membrane lipoprot 90.3 0.42 1.4E-05 36.6 5.0 78 1-79 54-147 (275)
58 2de3_A Dibenzothiophene desulf 90.0 0.62 2.1E-05 36.3 6.0 76 11-89 210-300 (365)
59 3uif_A Sulfonate ABC transport 89.7 0.63 2.1E-05 35.5 5.7 66 7-73 154-228 (348)
60 2x7q_A Ca3427, possible thiami 89.4 1.2 4.1E-05 33.5 7.1 85 2-88 149-249 (321)
61 3uif_A Sulfonate ABC transport 89.4 0.94 3.2E-05 34.4 6.5 56 4-61 52-110 (348)
62 2x26_A Periplasmic aliphatic s 88.4 1.3 4.4E-05 32.7 6.6 59 2-61 36-96 (308)
63 3k2d_A ABC-type metal ION tran 88.1 0.55 1.9E-05 35.1 4.2 76 1-79 37-130 (237)
64 3ir1_A Outer membrane lipoprot 86.9 1 3.4E-05 33.9 5.0 75 1-79 32-125 (245)
65 3lr1_A Tungstate ABC transport 85.8 1.5 5.2E-05 32.5 5.5 84 4-89 39-138 (236)
66 4ib2_A Putative lipoprotein; p 85.7 0.97 3.3E-05 34.0 4.4 76 1-79 41-134 (252)
67 3muq_A Uncharacterized conserv 85.7 1.7 5.8E-05 32.2 5.7 83 4-88 39-137 (237)
68 4ddd_A Immunogenic protein; ss 84.8 2.6 8.8E-05 32.2 6.6 70 3-73 179-285 (327)
69 3tqw_A Methionine-binding prot 84.6 0.86 2.9E-05 34.1 3.6 76 1-79 34-127 (240)
70 4ef1_A Pheromone COB1/lipoprot 84.2 0.99 3.4E-05 33.9 3.8 76 1-79 34-127 (246)
71 3skp_A Serotransferrin; iron b 84.0 2.2 7.6E-05 33.5 6.0 56 3-61 32-100 (342)
72 3r26_A Molybdate-binding perip 83.5 10 0.00035 27.1 9.3 78 2-86 150-232 (237)
73 1iej_A Ovotransferrin; iron, m 82.5 2.4 8.1E-05 33.1 5.6 26 3-28 37-62 (332)
74 1xs5_A 29 kDa protein, membran 81.4 2.3 7.8E-05 31.4 4.9 42 1-42 33-75 (241)
75 1us5_A Putative GLUR0 ligand b 80.8 5.8 0.0002 29.2 7.1 24 4-27 165-188 (314)
76 1h45_A Lactoferrin; metal tran 80.8 2.8 9.5E-05 32.7 5.4 56 3-61 38-104 (334)
77 3v83_A Serotransferrin; iron b 80.3 2.4 8.1E-05 36.4 5.2 57 4-62 60-126 (698)
78 3v83_A Serotransferrin; iron b 80.1 4.2 0.00014 34.9 6.6 54 3-59 388-454 (698)
79 2i49_A Bicarbonate transporter 79.9 2.7 9.1E-05 33.5 5.1 79 7-85 200-293 (429)
80 2x7q_A Ca3427, possible thiami 79.8 4.7 0.00016 30.1 6.3 61 2-62 48-112 (321)
81 2b4l_A Glycine betaine-binding 78.8 2.4 8.2E-05 31.7 4.3 56 3-60 198-257 (268)
82 3l6g_A Betaine ABC transporter 78.7 1.6 5.3E-05 32.4 3.2 53 7-60 38-94 (256)
83 2ozz_A Hypothetical protein YH 76.9 10 0.00036 27.9 7.3 55 6-60 52-108 (231)
84 4edp_A ABC transporter, substr 76.8 20 0.00067 26.3 10.1 82 4-87 215-299 (351)
85 1ryo_A Serotransferrin; iron t 75.7 4.8 0.00017 31.2 5.4 57 3-61 40-106 (327)
86 3tod_A Lactotransferrin; C-LOB 75.5 4.7 0.00016 31.5 5.2 25 4-28 32-56 (335)
87 3n5l_A Binding protein compone 73.9 6.3 0.00022 29.7 5.6 60 2-62 40-104 (310)
88 4got_A Methionine-binding lipo 73.7 4.8 0.00016 30.2 4.7 76 1-79 36-130 (249)
89 3hn0_A Nitrate transport prote 73.6 4.1 0.00014 30.2 4.4 31 7-37 131-161 (283)
90 4euo_A ABC transporter, substr 73.2 17 0.00058 26.8 7.8 130 2-133 176-312 (320)
91 3p7i_A PHND, subunit of alkylp 73.0 10 0.00035 28.8 6.6 57 3-62 51-114 (321)
92 1blf_A Lactoferrin; transferri 72.9 8.3 0.00028 33.0 6.5 27 3-29 372-398 (689)
93 2d3i_A Ovotransferrin; aluminu 72.6 6.3 0.00021 33.8 5.7 56 3-60 372-441 (686)
94 1p99_A Hypothetical protein PG 72.1 4 0.00014 31.0 4.0 41 2-42 69-111 (295)
95 3tmg_A Glycine betaine, L-prol 71.7 3 0.0001 31.3 3.2 54 7-61 52-109 (280)
96 1r9l_A Glycine betaine-binding 71.7 5.5 0.00019 30.1 4.8 58 3-60 41-102 (309)
97 3gzg_A Molybdate-binding perip 71.2 17 0.00059 26.5 7.3 78 2-86 166-248 (253)
98 1ii5_A SLR1257 protein; membra 69.4 4.5 0.00015 27.7 3.6 25 2-26 48-72 (233)
99 1cb6_A Protein (lactoferrin); 68.8 8.7 0.0003 32.9 5.8 27 3-29 372-398 (691)
100 3mc2_A Inhibitor of carbonic a 67.6 11 0.00038 32.3 6.1 53 4-59 370-442 (687)
101 3k6v_A Solute-binding protein 66.4 43 0.0015 25.9 9.5 81 3-88 224-331 (354)
102 1cb6_A Protein (lactoferrin); 66.2 8.2 0.00028 33.1 5.1 57 3-61 37-103 (691)
103 2d3i_A Ovotransferrin; aluminu 66.1 12 0.0004 32.1 6.0 57 3-61 37-103 (686)
104 1us5_A Putative GLUR0 ligand b 65.9 15 0.00053 26.8 6.1 57 5-62 57-123 (314)
105 2pyy_A Ionotropic glutamate re 65.8 5.6 0.00019 27.1 3.4 24 2-25 44-67 (228)
106 1blf_A Lactoferrin; transferri 65.7 9.7 0.00033 32.6 5.4 57 3-61 37-103 (689)
107 3kn3_A Putative periplasmic pr 64.6 6.1 0.00021 29.3 3.6 56 4-62 39-96 (242)
108 3ix1_A N-formyl-4-amino-5-amin 64.0 11 0.00036 27.6 4.9 79 9-88 142-237 (302)
109 3mpk_A Virulence sensor protei 63.4 10 0.00035 27.1 4.6 23 2-24 75-97 (267)
110 3hn0_A Nitrate transport prote 61.3 12 0.00041 27.6 4.7 34 2-35 37-70 (283)
111 4i1d_A ABC transporter substra 59.8 39 0.0013 24.6 7.4 78 6-85 185-263 (324)
112 2rin_A Putative glycine betain 58.6 12 0.00042 28.0 4.4 54 7-60 43-100 (298)
113 2xwv_A Sialic acid-binding per 58.0 22 0.00077 26.7 5.8 65 7-72 169-240 (312)
114 4ddd_A Immunogenic protein; ss 58.0 25 0.00086 26.5 6.1 59 3-62 71-138 (327)
115 2pfz_A Putative exported prote 57.5 37 0.0013 25.2 7.0 63 7-73 163-235 (301)
116 1atg_A MODA, periplasmic molyb 57.1 14 0.00048 25.1 4.2 23 5-27 33-56 (231)
117 1sw5_A Osmoprotection protein 56.1 4.7 0.00016 29.8 1.6 21 5-25 42-62 (275)
118 3cfz_A UPF0100 protein MJ1186; 56.1 50 0.0017 24.0 7.5 27 3-29 183-209 (292)
119 2noo_A NIKA, nickel-binding pe 55.8 26 0.0009 27.9 6.2 23 2-24 196-218 (502)
120 2pvu_A ARTJ; basic amino acid 55.2 9 0.00031 27.3 3.1 54 3-61 85-138 (272)
121 2yln_A Putative ABC transporte 54.4 9.7 0.00033 27.6 3.1 24 2-26 100-123 (283)
122 2hzl_A Trap-T family sorbitol/ 54.3 20 0.00068 27.5 5.1 66 7-72 197-271 (365)
123 3rpw_A ABC transporter; struct 53.9 48 0.0016 24.7 7.1 81 6-88 220-301 (365)
124 3t66_A Nickel ABC transporter 53.3 14 0.00046 29.7 4.1 67 2-71 193-267 (496)
125 3tpa_A Heme-binding protein A; 52.7 11 0.00038 30.3 3.5 24 2-25 223-246 (521)
126 3rqt_A Putative uncharacterize 52.5 26 0.0009 27.9 5.7 71 2-75 200-273 (486)
127 1atg_A MODA, periplasmic molyb 51.3 44 0.0015 22.4 6.1 81 3-86 141-225 (231)
128 1uqw_A Putative binding protei 50.2 14 0.00049 29.6 3.8 23 2-24 217-239 (509)
129 3cvg_A Putative metal binding 50.2 35 0.0012 25.1 5.7 55 5-61 60-116 (294)
130 3mc2_A Inhibitor of carbonic a 50.1 5.8 0.0002 34.0 1.4 58 4-62 47-113 (687)
131 2vpn_A Periplasmic substrate b 49.7 21 0.00073 26.7 4.5 51 7-59 166-218 (316)
132 3m8u_A Heme-binding protein A; 48.8 11 0.00039 30.3 2.9 24 2-25 218-241 (522)
133 3fxb_A Trap dicarboxylate tran 47.8 46 0.0016 25.1 6.2 64 7-72 180-251 (326)
134 3r6u_A Choline-binding protein 47.2 30 0.001 25.9 4.9 55 5-59 49-124 (284)
135 2g29_A Nitrate transport prote 45.9 26 0.00089 27.3 4.6 58 2-60 67-134 (417)
136 3r26_A Molybdate-binding perip 45.5 29 0.00098 24.6 4.5 55 4-60 39-97 (237)
137 2pfy_A Putative exported prote 45.1 29 0.00099 25.7 4.6 62 7-72 164-235 (301)
138 1ryo_A Serotransferrin; iron t 45.0 43 0.0015 25.8 5.6 71 4-74 184-271 (327)
139 3gzg_A Molybdate-binding perip 44.2 27 0.00093 25.4 4.2 56 4-61 55-114 (253)
140 1sw5_A Osmoprotection protein 42.9 45 0.0015 24.3 5.3 49 7-59 171-223 (275)
141 2ls4_A High affinity copper up 48.4 5.3 0.00018 19.4 0.0 20 112-131 5-24 (26)
142 3cij_A UPF0100 protein AF_0094 42.0 96 0.0033 22.4 8.7 79 3-86 185-290 (295)
143 2qmw_A PDT, prephenate dehydra 41.7 19 0.00066 27.0 3.1 55 2-59 31-95 (267)
144 2zzv_A ABC transporter, solute 41.6 13 0.00046 28.4 2.2 67 7-73 199-279 (361)
145 2qmx_A Prephenate dehydratase; 40.7 21 0.00071 27.1 3.1 55 2-59 29-93 (283)
146 3u65_B TP33 protein; tetratric 40.5 31 0.0011 26.2 4.2 65 8-74 184-256 (328)
147 3cfx_A UPF0100 protein MA_0280 40.1 1E+02 0.0036 22.3 8.4 79 3-86 186-291 (296)
148 3cg1_A UPF0100 protein PF0080; 39.5 1E+02 0.0036 22.1 7.8 81 4-86 186-291 (296)
149 3pu5_A Extracellular solute-bi 39.1 1.1E+02 0.0037 22.2 11.1 82 3-86 190-274 (333)
150 4ecf_A ABC-type phosphate tran 39.1 17 0.0006 26.5 2.4 55 5-62 38-93 (264)
151 1zbm_A Hypothetical protein AF 38.9 17 0.00058 26.2 2.4 22 5-26 44-65 (280)
152 2hxw_A Major antigenic peptide 38.3 56 0.0019 22.5 5.0 79 5-89 149-230 (237)
153 1dpe_A Dipeptide-binding prote 37.4 16 0.00055 29.2 2.1 23 2-24 216-238 (507)
154 3mwb_A Prephenate dehydratase; 36.8 25 0.00085 27.1 3.1 57 2-59 34-99 (313)
155 3o9p_A Periplasmic murein pept 36.8 25 0.00087 28.1 3.3 22 2-23 226-247 (519)
156 1i6a_A OXYR, hydrogen peroxide 36.5 47 0.0016 22.3 4.3 51 6-64 41-91 (219)
157 4ef1_A Pheromone COB1/lipoprot 35.7 47 0.0016 24.6 4.3 75 8-86 158-237 (246)
158 3o66_A Glycine betaine/carniti 35.3 50 0.0017 24.6 4.5 20 5-24 48-67 (282)
159 3ho7_A OXYR; beta-alpha-barrel 35.2 98 0.0034 20.5 6.9 70 3-73 140-210 (232)
160 2czl_A Hypothetical protein TT 35.1 32 0.0011 24.5 3.3 25 7-31 125-150 (272)
161 2hpg_A ABC transporter, peripl 33.8 27 0.00093 26.4 2.8 63 7-71 184-254 (327)
162 4eqb_A Spermidine/putrescine A 31.8 1.5E+02 0.005 21.5 6.9 67 9-76 192-261 (330)
163 3i42_A Response regulator rece 31.4 38 0.0013 20.6 2.9 25 2-26 30-54 (127)
164 3mio_A DHBP synthase, 3,4-dihy 30.8 39 0.0013 24.5 3.1 23 4-26 3-25 (206)
165 4gl8_A Oligopeptide ABC transp 30.6 30 0.001 27.7 2.7 24 3-26 242-265 (529)
166 3cg4_A Response regulator rece 30.5 49 0.0017 20.5 3.3 25 2-26 34-58 (142)
167 3zs6_A Periplasmic oligopeptid 30.3 21 0.00071 28.6 1.7 22 2-23 213-234 (506)
168 1tks_A 3,4-dihydroxy-2-butanon 30.2 42 0.0014 24.3 3.1 23 4-26 4-26 (204)
169 2grv_A LPQW; substrate-binding 30.0 36 0.0012 28.2 3.2 24 2-25 252-275 (621)
170 3f6p_A Transcriptional regulat 30.0 47 0.0016 20.1 3.1 26 2-27 29-54 (120)
171 4ab5_A Transcriptional regulat 29.9 1.2E+02 0.004 19.9 8.3 56 3-61 135-193 (222)
172 1k4i_A 3,4-dihydroxy-2-butanon 29.6 44 0.0015 24.7 3.2 23 4-26 11-33 (233)
173 3c9h_A ABC transporter, substr 29.1 1.7E+02 0.0059 21.5 8.9 83 3-87 211-297 (355)
174 3nhm_A Response regulator; pro 29.1 45 0.0015 20.4 2.9 26 2-27 30-55 (133)
175 2h9b_A HTH-type transcriptiona 28.5 70 0.0024 23.0 4.3 50 7-64 127-176 (312)
176 4exl_A PBP 1, phosphate-bindin 28.1 40 0.0014 24.5 2.9 55 5-62 38-93 (265)
177 3t6k_A Response regulator rece 27.8 47 0.0016 20.7 2.9 25 2-26 31-55 (136)
178 3grc_A Sensor protein, kinase; 26.4 64 0.0022 19.9 3.3 25 2-26 33-57 (140)
179 1snn_A DHBP synthase, 3,4-dihy 26.2 39 0.0013 24.9 2.4 22 5-26 1-22 (227)
180 2czl_A Hypothetical protein TT 26.2 64 0.0022 22.9 3.6 24 4-27 35-58 (272)
181 3cni_A Putative ABC type-2 tra 26.1 35 0.0012 22.7 2.0 21 5-25 41-61 (156)
182 3gl9_A Response regulator; bet 26.0 48 0.0016 20.2 2.6 25 2-26 29-53 (122)
183 2qr3_A Two-component system re 25.9 57 0.0019 20.1 3.0 26 2-27 30-55 (140)
184 3gt7_A Sensor protein; structu 25.3 53 0.0018 21.0 2.8 26 2-27 34-59 (154)
185 4e7p_A Response regulator; DNA 25.0 54 0.0019 20.7 2.8 26 2-27 49-74 (150)
186 3lte_A Response regulator; str 25.0 58 0.002 19.8 2.9 25 2-26 33-57 (132)
187 3eod_A Protein HNR; response r 25.0 59 0.002 19.8 2.9 26 2-27 34-59 (130)
188 1jet_A OPPA, oligo-peptide bin 24.7 30 0.001 27.6 1.7 22 2-23 223-244 (517)
189 3kht_A Response regulator; PSI 24.6 68 0.0023 19.9 3.2 26 2-27 34-59 (144)
190 2i49_A Bicarbonate transporter 24.6 1.2E+02 0.0039 23.9 5.1 56 2-59 70-136 (429)
191 3hv2_A Response regulator/HD d 24.5 57 0.002 20.7 2.9 26 2-27 41-66 (153)
192 2rdm_A Response regulator rece 24.5 68 0.0023 19.4 3.2 25 2-26 32-57 (132)
193 3oxn_A Putative transcriptiona 24.5 1.6E+02 0.0056 19.7 6.8 67 3-72 145-217 (241)
194 3m6m_D Sensory/regulatory prot 24.0 60 0.002 20.5 2.9 25 2-26 41-65 (143)
195 3hdg_A Uncharacterized protein 23.7 59 0.002 20.0 2.7 26 2-27 34-59 (137)
196 1xs5_A 29 kDa protein, membran 23.5 1.7E+02 0.0057 21.1 5.5 20 9-30 156-175 (241)
197 3cnb_A DNA-binding response re 23.3 84 0.0029 19.2 3.5 26 2-27 37-62 (143)
198 1xoc_A Oligopeptide-binding pr 23.1 39 0.0013 27.0 2.1 23 2-24 219-241 (520)
199 4gl0_A LMO0810 protein; struct 23.1 1.9E+02 0.0064 21.1 5.8 77 9-87 195-274 (333)
200 2qxy_A Response regulator; reg 22.9 62 0.0021 20.0 2.8 26 2-27 31-56 (142)
201 2h98_A HTH-type transcriptiona 22.8 93 0.0032 22.5 4.0 50 7-64 127-176 (313)
202 2lnb_A Z-DNA-binding protein 1 22.8 36 0.0012 20.9 1.4 17 63-79 48-64 (80)
203 1p6q_A CHEY2; chemotaxis, sign 22.7 91 0.0031 18.8 3.5 25 2-26 34-58 (129)
204 4esw_A Pyrimidine biosynthesis 22.6 48 0.0016 24.7 2.4 24 8-31 145-168 (342)
205 3ilh_A Two component response 22.3 70 0.0024 19.7 2.9 25 2-26 38-67 (146)
206 3a10_A Response regulator; pho 22.2 73 0.0025 18.8 2.9 25 2-26 28-52 (116)
207 2gkg_A Response regulator homo 22.0 55 0.0019 19.5 2.3 25 2-26 32-56 (127)
208 1lq7_A Alpha3W; three helix bu 22.0 88 0.003 17.7 2.8 23 65-87 13-35 (67)
209 2rjn_A Response regulator rece 21.6 69 0.0024 20.2 2.8 25 2-26 34-58 (154)
210 3n53_A Response regulator rece 21.6 53 0.0018 20.4 2.2 26 2-27 29-54 (140)
211 3drf_A Oligopeptide-binding pr 21.1 84 0.0029 25.6 3.7 21 3-24 256-276 (590)
212 2zay_A Response regulator rece 21.1 55 0.0019 20.5 2.2 25 2-26 35-59 (147)
213 1jbe_A Chemotaxis protein CHEY 20.7 1E+02 0.0034 18.5 3.4 25 2-26 32-56 (128)
214 3hdv_A Response regulator; PSI 20.6 1E+02 0.0036 18.7 3.5 26 2-27 34-60 (136)
215 3kyj_B CHEY6 protein, putative 20.6 97 0.0033 19.2 3.4 24 4-27 44-68 (145)
216 2jk1_A HUPR, hydrogenase trans 20.6 1E+02 0.0034 19.0 3.4 25 2-26 27-51 (139)
217 3luy_A Probable chorismate mut 20.5 64 0.0022 24.9 2.7 55 2-59 40-104 (329)
218 2pl1_A Transcriptional regulat 20.1 86 0.0029 18.6 2.9 25 2-26 27-51 (121)
219 1k66_A Phytochrome response re 20.1 1.2E+02 0.0042 18.5 3.8 25 2-26 35-69 (149)
220 2j48_A Two-component sensor ki 20.1 63 0.0022 18.8 2.2 25 2-26 28-52 (119)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.73 E-value=1.3e-17 Score=142.84 Aligned_cols=125 Identities=21% Similarity=0.248 Sum_probs=107.2
Q ss_pred cCCHHHHHHHHH-cCCceEEEecHHHHHHHHHhc-CCCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHHH
Q 039381 5 IFSENRHRQALT-SGEIAAAFLEVPYVKLFLAKN-CKNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLRE 81 (138)
Q Consensus 5 ~~~~~e~~~aL~-~G~vdA~i~d~~~l~~~~~~~-~~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~~ 81 (138)
+++.++++++++ +++.+|++.|.+.+.|+.+++ |+ +. +++.+...+|||++||||||++.||.+|++|+++|.+++
T Consensus 674 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~y~~~~~~c~-l~~v~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~ 752 (823)
T 3kg2_A 674 VRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDK 752 (823)
T ss_dssp BSSHHHHHHHHHTTTTSEEEEEEHHHHHHHHTSTTCC-EEEESCCSSCEEECCEEETTCSSHHHHHHHHHHHHHTTHHHH
T ss_pred cCCHHHHHHHHhccCCceEEEechHHHHHHHhcCCCc-eEEccccccccceeEeecCCChHHHHHHHHHHHHHhCCcHHH
Confidence 468899999998 677899999999999887776 76 88 999999999999999999999999999999999999999
Q ss_pred HHHHhcCC-CCCCCCCC--CCccCCcccccccceeeeehhhhhhhHhhhhhh
Q 039381 82 LEEAMLSP-YNCSTKEN--NEDLEGLGLRSFQDEQSSPSQSRTREHWLSAWE 130 (138)
Q Consensus 82 l~~kW~~~-~~c~~~~~--~~~~~~l~~~~~~G~F~~~g~~~~~~~~~~~~~ 130 (138)
+.+||+.. ..|..... ...+.+|+++++.|+|++++++++++..++-+|
T Consensus 753 ~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E 804 (823)
T 3kg2_A 753 LKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 804 (823)
T ss_dssp HHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999864 68987532 356779999999999999988765555555444
No 2
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.70 E-value=5.4e-17 Score=124.56 Aligned_cols=92 Identities=22% Similarity=0.391 Sum_probs=85.7
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLR 80 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~ 80 (138)
++.+++.++++++|.+|++||++.|.+++.|++++.|+ +. ++..+...+|+||++|++||++.||.+|.+|+++|+++
T Consensus 200 ~~~~~~~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~-l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~ 278 (292)
T 1pb7_A 200 KHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCD-LVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFME 278 (292)
T ss_dssp TTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTT-EEECSSCSEEEEECCEEETTCSSHHHHHHHHHHHHHSSHHH
T ss_pred hhcCCCHHHHHHHHHcCCceEEEEcHHHHHHHHhcCCC-EEEcCccccCCceEEEEeCCCHHHHHHHHHHHHHHhCCCHH
Confidence 45688999999999999999999999999999988886 88 88888889999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCC
Q 039381 81 ELEEAMLSPYNCST 94 (138)
Q Consensus 81 ~l~~kW~~~~~c~~ 94 (138)
+|.+||++.+.|.+
T Consensus 279 ~l~~kw~~~~~c~~ 292 (292)
T 1pb7_A 279 DLDKTWVRYQECDS 292 (292)
T ss_dssp HHHHHHTSSSCCCC
T ss_pred HHHHhhCCCCCCCC
Confidence 99999999999963
No 3
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.67 E-value=3.2e-16 Score=120.74 Aligned_cols=103 Identities=27% Similarity=0.464 Sum_probs=82.7
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHHH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLRE 81 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~~ 81 (138)
+.+++.++++++|.+|+ ||++.|.+++.|++++.|+ +. ++..+...+|+|+++|++||++.||.+|.+|+++|++++
T Consensus 203 ~~~~~~~~~~~~l~~G~-Da~i~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~ 280 (312)
T 1yae_A 203 VLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCN-LTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHM 280 (312)
T ss_dssp HCBSSHHHHHHHHHHSS-EEEEEEHHHHHHHHTTCTT-EEEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHH
T ss_pred cccCCHHHHHHHHHcCC-cEEEeccHHHHHHHhcCCC-EEEecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 45789999999999999 9999999999999887775 88 888888999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccCCccccc
Q 039381 82 LEEAMLSPYNCSTKENNEDLEGLGLRS 108 (138)
Q Consensus 82 l~~kW~~~~~c~~~~~~~~~~~l~~~~ 108 (138)
|.+||++.+.|...+ ...+.-++++|
T Consensus 281 i~~kw~~~~~c~~~~-~~~~~~~~~~~ 306 (312)
T 1yae_A 281 MKEKWWRGNGCPEEE-SKEASALGVQN 306 (312)
T ss_dssp HHHHHHCCSCC----------------
T ss_pred HHhhhcCCCCCCCCC-Cccchhhhhhc
Confidence 999999999998754 23445556554
No 4
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.65 E-value=3.9e-16 Score=116.17 Aligned_cols=89 Identities=26% Similarity=0.437 Sum_probs=80.3
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHHH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLRE 81 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~~ 81 (138)
+.+++.++++++|.+|+ ||++.|.+++.|+.++.++ +. ++..+...+++|+++|++||++.||++|.+|+++|++++
T Consensus 169 ~~~~~~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~ 246 (259)
T 3g3k_A 169 VLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCN-LTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHM 246 (259)
T ss_dssp HEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHHCTT-EEEESSCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHH
T ss_pred cccCCHHHHHHHHHhCC-eEEEechHHHHHHhcCCce-EEEecccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHH
Confidence 45789999999999999 9999999999998888765 88 888899999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCC
Q 039381 82 LEEAMLSPYNCS 93 (138)
Q Consensus 82 l~~kW~~~~~c~ 93 (138)
|.+|||+.++|.
T Consensus 247 i~~kw~~~~~c~ 258 (259)
T 3g3k_A 247 MKEKWWRGNGCP 258 (259)
T ss_dssp HHHHHHCC--CC
T ss_pred HHHhhcCCCCCC
Confidence 999999988896
No 5
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.61 E-value=1.5e-15 Score=116.28 Aligned_cols=89 Identities=18% Similarity=0.384 Sum_probs=79.0
Q ss_pred ecCCHHHHHHHHHc--CCceEEEecHHHHHHHHHhc--CCCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCc
Q 039381 4 PIFSENRHRQALTS--GEIAAAFLEVPYVKLFLAKN--CKNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGK 78 (138)
Q Consensus 4 ~~~~~~e~~~aL~~--G~vdA~i~d~~~l~~~~~~~--~~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~ 78 (138)
.+++.++++++|.+ |++||++.|.+++.|++++. |+ +. ++..+...+|+|+++|+++|++.||.+|.+|+++|+
T Consensus 200 ~~~~~~~~~~~l~~~~GrvDa~i~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~ 278 (294)
T 2rc8_A 200 NVPATPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCK-LLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGF 278 (294)
T ss_dssp CBSSHHHHHHHHHSSSCCCSEEEEEHHHHHHHHHTCSSSC-EEECSCCEEEEEECCEECTTCTHHHHHHHHHHHHHHTTH
T ss_pred cCCCHHHHHHHHHhccCceeEEEecHHHHHHHHhhCCCCC-EEEcCCcccccceEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 47899999999999 99999999999999998874 44 88 888888899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCC
Q 039381 79 LRELEEAMLSPYNCS 93 (138)
Q Consensus 79 ~~~l~~kW~~~~~c~ 93 (138)
+++|.+||++...|.
T Consensus 279 ~~~l~~kw~~~~~c~ 293 (294)
T 2rc8_A 279 MDVLHDKWYKVVPCG 293 (294)
T ss_dssp HHHHHHHHCCC----
T ss_pred HHHHHHhhcCCCCCC
Confidence 999999999998995
No 6
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.60 E-value=4.1e-15 Score=110.47 Aligned_cols=88 Identities=19% Similarity=0.214 Sum_probs=76.7
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCC-Cee-e-CCCCCcceeEEEEeCCCh-hHHHHHHHHHHHhhcC
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCK-NFT-T-GPTYSVGGFGFAFPKDSA-YLADFSQAILQLSEEG 77 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~-~~~-~-~~~~~~~~~g~a~~Kgsp-l~~~in~~l~~l~~~G 77 (138)
++.|++.++++++|.+|++||++.|.+++.+++.+++. .+. + ......++++||++|++| |++.||++|.+|+++|
T Consensus 147 i~~~~~~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~~~L~~~~n~aL~~l~~dG 226 (243)
T 4h5g_A 147 LTSLTNMGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNSDDLKEVVDKVIQKLKDEG 226 (243)
T ss_dssp EEEESCHHHHHHHHHHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSCHHHHHHHHHHHHHHHHHT
T ss_pred eEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCCHHHHHHHHHHHHHHHHCC
Confidence 67899999999999999999999999999888877653 123 3 344567789999999998 9999999999999999
Q ss_pred cHHHHHHHhcCC
Q 039381 78 KLRELEEAMLSP 89 (138)
Q Consensus 78 ~~~~l~~kW~~~ 89 (138)
++++|.+||++.
T Consensus 227 ~~~~i~~Kw~~~ 238 (243)
T 4h5g_A 227 TYQSYLEKAASL 238 (243)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHhcCC
Confidence 999999999875
No 7
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.60 E-value=5.7e-15 Score=108.66 Aligned_cols=94 Identities=18% Similarity=0.303 Sum_probs=82.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCC-CCCcceeEEEEeCCCh-hHHHHHHHHHHHhhcCc
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGP-TYSVGGFGFAFPKDSA-YLADFSQAILQLSEEGK 78 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~-~~~~~~~g~a~~Kgsp-l~~~in~~l~~l~~~G~ 78 (138)
++.+++.++++++|.+|++||++.+.+++.+++++....+. ++. .+...+++|+++|+++ |++.||++|.+|+++|+
T Consensus 128 ~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~G~ 207 (232)
T 3i6v_A 128 LVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGT 207 (232)
T ss_dssp EEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCHHHHHHHHHHHHHHHHTSH
T ss_pred EEEeCCHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCCh
Confidence 57889999999999999999999999999999887633466 654 4567889999999987 99999999999999999
Q ss_pred HHHHHHHhcCCCCCCCC
Q 039381 79 LRELEEAMLSPYNCSTK 95 (138)
Q Consensus 79 ~~~l~~kW~~~~~c~~~ 95 (138)
+++|.+|||+.+.|...
T Consensus 208 ~~~i~~k~~~~~~~~~~ 224 (232)
T 3i6v_A 208 LNTMIKKWFGEDAAVYE 224 (232)
T ss_dssp HHHHHHHHHCTTSCCC-
T ss_pred HHHHHHHHcCCCCCccc
Confidence 99999999998766653
No 8
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.57 E-value=3e-15 Score=111.21 Aligned_cols=87 Identities=18% Similarity=0.186 Sum_probs=78.2
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCCh-hHHHHHHHHHHHhhcCcHHH
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSA-YLADFSQAILQLSEEGKLRE 81 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgsp-l~~~in~~l~~l~~~G~~~~ 81 (138)
.+++.++++++|.+|++||++.+.+++.++.++....+. ++..+...+++|+++|++| |++.||++|.+|+++|++++
T Consensus 149 ~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~~l~~~G~~~~ 228 (243)
T 4gvo_A 149 EGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKK 228 (243)
T ss_dssp CCSGGGSHHHHHHHTSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECTTCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred ccCChHHHHHHHHcCCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHhCcHHHH
Confidence 467888999999999999999999999888877654467 8878888899999999988 99999999999999999999
Q ss_pred HHHHhcCCC
Q 039381 82 LEEAMLSPY 90 (138)
Q Consensus 82 l~~kW~~~~ 90 (138)
|.+|||+.+
T Consensus 229 i~~kw~g~d 237 (243)
T 4gvo_A 229 LSEKWLGAD 237 (243)
T ss_dssp HHHHHHCGG
T ss_pred HHHHHCCCC
Confidence 999999864
No 9
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.56 E-value=1.2e-14 Score=110.76 Aligned_cols=86 Identities=23% Similarity=0.457 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHcCCceEEEecHHHHHHHHHhc--CCCee-eC--CCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHH
Q 039381 6 FSENRHRQALTSGEIAAAFLEVPYVKLFLAKN--CKNFT-TG--PTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLR 80 (138)
Q Consensus 6 ~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~--~~~~~-~~--~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~ 80 (138)
++.++++++|.+|++||++.|.+++.+++++. |. +. ++ ..+...+|+||++|+++|++.||++|.+|+++|+++
T Consensus 193 ~~~~~~l~~l~~G~vDa~i~d~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~ 271 (284)
T 2a5s_A 193 RGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCK-LVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEME 271 (284)
T ss_dssp SSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSC-EEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHcCCeeEEEEchHHHHHHHhcCCCCC-EEEeCCccccccCceEEEecCCCHHHHHHHHHHHHHHhCChHH
Confidence 78999999999999999999999999998875 44 77 64 577888999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCC
Q 039381 81 ELEEAMLSPYNCS 93 (138)
Q Consensus 81 ~l~~kW~~~~~c~ 93 (138)
+|.+||++. .|+
T Consensus 272 ~i~~kw~~~-~c~ 283 (284)
T 2a5s_A 272 ELETLWLTG-ICH 283 (284)
T ss_dssp HHHHHHTCC-CCC
T ss_pred HHHHHhhhc-cCC
Confidence 999999985 785
No 10
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.55 E-value=2.3e-14 Score=105.08 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=83.6
Q ss_pred CeeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcce----eEEEEeCCCh-hHHHHHHHHHHHh
Q 039381 1 NIEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGG----FGFAFPKDSA-YLADFSQAILQLS 74 (138)
Q Consensus 1 ~i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~----~g~a~~Kgsp-l~~~in~~l~~l~ 74 (138)
+++.+++.++++++|.+|++||++.+.+.+.+++++.+. +. ++..+.... ++|+++|+++ |++.||++|.+|+
T Consensus 140 ~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~ 218 (242)
T 3del_B 140 HIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPA-LSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIR 218 (242)
T ss_dssp CEEEESSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGCEEEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred eEEEECCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCC-eEEecCccCcccccceEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999888765 77 777777777 9999999988 9999999999999
Q ss_pred hcCcHHHHHHHhcCCCCCCC
Q 039381 75 EEGKLRELEEAMLSPYNCST 94 (138)
Q Consensus 75 ~~G~~~~l~~kW~~~~~c~~ 94 (138)
++|++++|.+||++...|..
T Consensus 219 ~~g~~~~i~~k~~~~~~~~~ 238 (242)
T 3del_B 219 KEGVLAELEQKWGLNNLEHH 238 (242)
T ss_dssp HTTHHHHHHHHTTGGGCSST
T ss_pred HcCCHHHHHHHHCCCCCccc
Confidence 99999999999999866654
No 11
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.53 E-value=1.5e-14 Score=106.08 Aligned_cols=89 Identities=11% Similarity=0.192 Sum_probs=78.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC------C-Cee-eCCCC-CcceeEEEEeCCCh-hHHHHHHHHH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC------K-NFT-TGPTY-SVGGFGFAFPKDSA-YLADFSQAIL 71 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~------~-~~~-~~~~~-~~~~~g~a~~Kgsp-l~~~in~~l~ 71 (138)
++.+++.++++++|.+|++||++.+.+.+.+++++.+ . .+. ++.++ ...+++|+++|+++ |++.||++|.
T Consensus 134 ~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~ 213 (237)
T 3kzg_A 134 VIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPDQFVLIKKINKILL 213 (237)
T ss_dssp EEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECGGGHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEEEcCCCHHHHHHHHHHHH
Confidence 5778999999999999999999999999999988755 2 477 77777 88899999999987 9999999999
Q ss_pred HHhhcCcHHHHHHHhcCCC
Q 039381 72 QLSEEGKLRELEEAMLSPY 90 (138)
Q Consensus 72 ~l~~~G~~~~l~~kW~~~~ 90 (138)
+|+++|++++|.+||+.+.
T Consensus 214 ~l~~~G~~~~i~~k~~~~~ 232 (237)
T 3kzg_A 214 EMEADGTYLRLYSEYFEGH 232 (237)
T ss_dssp HHHHSSHHHHHHHHHC---
T ss_pred HHHHCCcHHHHHHHHhCcc
Confidence 9999999999999999974
No 12
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.53 E-value=7.4e-14 Score=104.26 Aligned_cols=94 Identities=14% Similarity=0.252 Sum_probs=83.5
Q ss_pred CeeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC--CCee-eCCCCCcceeEEEEeCCCh-hHHHHHHHHHHHhhc
Q 039381 1 NIEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC--KNFT-TGPTYSVGGFGFAFPKDSA-YLADFSQAILQLSEE 76 (138)
Q Consensus 1 ~i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~--~~~~-~~~~~~~~~~g~a~~Kgsp-l~~~in~~l~~l~~~ 76 (138)
+++.+++.++++++|.+|++||++.+.+++.+++++.. ..+. ++..+...+++|+++|+++ |++.||++|.+|+++
T Consensus 157 ~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~ 236 (268)
T 3hv1_A 157 KVVQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARKVDKTLIKKINQGFETLYKN 236 (268)
T ss_dssp CEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECTTCHHHHHHHHHHHHHHHHH
T ss_pred eEEEeCCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhC
Confidence 35778999999999999999999999999999888764 4577 7777888999999999997 999999999999999
Q ss_pred CcHHHHHHHhcCCCCCCC
Q 039381 77 GKLRELEEAMLSPYNCST 94 (138)
Q Consensus 77 G~~~~l~~kW~~~~~c~~ 94 (138)
|++++|.+|||+.+.+..
T Consensus 237 g~~~~i~~k~~~~~~~~~ 254 (268)
T 3hv1_A 237 GEFQKISNKWFGEDVATD 254 (268)
T ss_dssp THHHHHHHHHHSSCCCCT
T ss_pred CHHHHHHHHhcCCCCCCC
Confidence 999999999999764443
No 13
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.51 E-value=6.3e-14 Score=104.35 Aligned_cols=91 Identities=21% Similarity=0.273 Sum_probs=81.2
Q ss_pred eeecCCHHHHHHHH--HcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCc
Q 039381 2 IEPIFSENRHRQAL--TSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGK 78 (138)
Q Consensus 2 i~~~~~~~e~~~aL--~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~ 78 (138)
++.+++.++++++| .+|+ ||++.+.+++.+++++.+..+. ++..+...+++|+++|+++|++.||++|.+|+++|+
T Consensus 168 ~~~~~~~~~~~~~l~~~~g~-da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~ 246 (263)
T 1mqi_A 168 SVFVRTTAEGVARVRKSKGK-YAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGL 246 (263)
T ss_dssp CCCBSSHHHHHHHHHHTTTS-EEEEEEHHHHHHHTTSTTCCEEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTH
T ss_pred ceecCCHHHHHHHHhhcCCc-EEEEechHHHHHHHhcCCCceEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhccc
Confidence 45688999999999 9999 9999999999888877643477 888888899999999999999999999999999999
Q ss_pred HHHHHHHhcCC-CCCC
Q 039381 79 LRELEEAMLSP-YNCS 93 (138)
Q Consensus 79 ~~~l~~kW~~~-~~c~ 93 (138)
+++|.+||+.. ..|.
T Consensus 247 ~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 247 LDKLKNKWWYDKGECG 262 (263)
T ss_dssp HHHHHHHHHTTTCSCC
T ss_pred HHHHHHHHcCCCCCCC
Confidence 99999999985 5885
No 14
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.51 E-value=8.5e-14 Score=103.25 Aligned_cols=90 Identities=22% Similarity=0.357 Sum_probs=76.5
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC-CCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC-KNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLR 80 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~-~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~ 80 (138)
..+++.++++++|.+|++ |++.|.+++.+++++.. ..+. ++..+...+++|+++|++||++.||++|.+|+++|+++
T Consensus 172 ~~~~~~~~~~~~l~~G~~-a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~ 250 (265)
T 2v3u_A 172 NNVLESQAGIQKVKYGNY-AFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMD 250 (265)
T ss_dssp CCBSSHHHHHHHHHHSSC-EEEEEHHHHHHHHHHCTTCCEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHH
T ss_pred cccCCHHHHHHHHHcCCE-EEEEcchHHHHHHhcCCCccEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHH
Confidence 468899999999999999 99999999998887652 2388 88888889999999999999999999999999999999
Q ss_pred HHHHHhcCC-CCCC
Q 039381 81 ELEEAMLSP-YNCS 93 (138)
Q Consensus 81 ~l~~kW~~~-~~c~ 93 (138)
+|.+||++. ..|.
T Consensus 251 ~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 251 ILKHKWWPKNGQCD 264 (265)
T ss_dssp HHHHHHCCCCCC--
T ss_pred HHHhhcCCCcCcCC
Confidence 999999986 4774
No 15
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.51 E-value=7.4e-14 Score=103.21 Aligned_cols=91 Identities=20% Similarity=0.363 Sum_probs=81.6
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC-CCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC-KNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKL 79 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~-~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~ 79 (138)
++.+++..+++++|.+|++||++.+.+.+.+++++.+ ..+. ++..+....++|+++|++||++.||++|.+|+++|++
T Consensus 154 ~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~ 233 (249)
T 4f3p_A 154 IRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELARMKADGRY 233 (249)
T ss_dssp EEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTCTHHHHHHHHHHHHHHHTHH
T ss_pred EEEcCCHHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCchHHHHHHHHHHHHHhCCcH
Confidence 5678999999999999999999999999999988763 3477 7777888899999999999999999999999999999
Q ss_pred HHHHHHhcCCCCC
Q 039381 80 RELEEAMLSPYNC 92 (138)
Q Consensus 80 ~~l~~kW~~~~~c 92 (138)
++|.+|||+...+
T Consensus 234 ~~i~~k~~~~~~~ 246 (249)
T 4f3p_A 234 AKIYKKWFGSEPP 246 (249)
T ss_dssp HHHHHHHHSSCC-
T ss_pred HHHHHHHcCCCCC
Confidence 9999999997654
No 16
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.50 E-value=1.3e-13 Score=101.42 Aligned_cols=89 Identities=17% Similarity=0.305 Sum_probs=81.1
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC-CCee-eCCCCCcceeEEEEeCCCh-hHHHHHHHHHHHhhcCc
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC-KNFT-TGPTYSVGGFGFAFPKDSA-YLADFSQAILQLSEEGK 78 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~-~~~~-~~~~~~~~~~g~a~~Kgsp-l~~~in~~l~~l~~~G~ 78 (138)
++.+++.++++++|.+|++||++.+.+.+.+++++.+ ..+. ++..+...+++|+++|++| |++.||++|.+|+++|+
T Consensus 139 ~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~ 218 (245)
T 3k4u_A 139 LKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGS 218 (245)
T ss_dssp EEEESSHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCHHHHHHHHHHHHHHHHHSH
T ss_pred EEEeCCHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCHHHHHHHHHHHHHHHhCcH
Confidence 5788999999999999999999999999988877653 4477 8888889999999999998 99999999999999999
Q ss_pred HHHHHHHhcCCC
Q 039381 79 LRELEEAMLSPY 90 (138)
Q Consensus 79 ~~~l~~kW~~~~ 90 (138)
+++|.+|||+..
T Consensus 219 ~~~i~~k~~~~~ 230 (245)
T 3k4u_A 219 YDELYERWFVDT 230 (245)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHhcCcc
Confidence 999999999874
No 17
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.45 E-value=3.3e-13 Score=97.83 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=79.3
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhc-CCCee-eCCCCCcceeEEEEeCCCh-hHHHHHHHHHHHhhcCc
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKN-CKNFT-TGPTYSVGGFGFAFPKDSA-YLADFSQAILQLSEEGK 78 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~-~~~~~-~~~~~~~~~~g~a~~Kgsp-l~~~in~~l~~l~~~G~ 78 (138)
++.+++..+++++|.+|++||++.+.+.+.+++++. ...+. ++..+...+++++++|+++ +++.||++|.+|+++|+
T Consensus 141 ~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~ 220 (234)
T 3h7m_A 141 LVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQ 220 (234)
T ss_dssp EEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHHHHHHHTH
T ss_pred EEEeCCHHHHHHHHHcCCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCHHHHHHHHHHHHHHHHcCc
Confidence 567899999999999999999999999999988775 23477 7777778899999999998 99999999999999999
Q ss_pred HHHHHHHhcCC
Q 039381 79 LRELEEAMLSP 89 (138)
Q Consensus 79 ~~~l~~kW~~~ 89 (138)
+++|.+|||+.
T Consensus 221 ~~~i~~k~~~~ 231 (234)
T 3h7m_A 221 YEAIRAKWLGV 231 (234)
T ss_dssp HHHHHHHSTTC
T ss_pred HHHHHHHhccc
Confidence 99999999985
No 18
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.45 E-value=3.9e-13 Score=97.36 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=78.7
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC-CCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC-KNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKL 79 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~-~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~ 79 (138)
++.+++..+++++|.+|++||++.+.+.+.+++++.. ..+. ++..+....++|+++|+++|.+.+|++|.+|+++|++
T Consensus 138 ~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~l~~l~~~g~~ 217 (233)
T 1ii5_A 138 VRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVI 217 (233)
T ss_dssp EEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETTCTTHHHHHHHHHHHHHTTHH
T ss_pred eEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCCchHHHHHHHHHHHHHhCCcH
Confidence 5678999999999999999999999999999887753 2477 7777778899999999999999999999999999999
Q ss_pred HHHHHHhcCCC
Q 039381 80 RELEEAMLSPY 90 (138)
Q Consensus 80 ~~l~~kW~~~~ 90 (138)
++|.+||++..
T Consensus 218 ~~i~~k~~~~~ 228 (233)
T 1ii5_A 218 AEFTERWLGPG 228 (233)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHcCCC
Confidence 99999999863
No 19
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.44 E-value=7.3e-13 Score=97.98 Aligned_cols=90 Identities=19% Similarity=0.160 Sum_probs=81.2
Q ss_pred CeeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcce----eEEEEeCCCh-hHHHHHHHHHHHh
Q 039381 1 NIEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGG----FGFAFPKDSA-YLADFSQAILQLS 74 (138)
Q Consensus 1 ~i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~----~g~a~~Kgsp-l~~~in~~l~~l~ 74 (138)
+++.+++.++++++|.+|++||++.+.+.+.+++++.+. +. ++.++.... ++|+++|++| +++.+|++|.+++
T Consensus 161 ~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~ 239 (268)
T 3qax_A 161 CVRSFDSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPN-LVATRLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDLK 239 (268)
T ss_dssp CEEEESCHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGCBCCEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred eEEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCC-cEEecCccCcccccccEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999888765 77 777777777 9999999998 9999999999999
Q ss_pred hcCcHHHHHHHhcCCCC
Q 039381 75 EEGKLRELEEAMLSPYN 91 (138)
Q Consensus 75 ~~G~~~~l~~kW~~~~~ 91 (138)
++|++++|.+||+....
T Consensus 240 ~~g~~~~i~~k~~~~~~ 256 (268)
T 3qax_A 240 SEGVIQSLTKKWQLSEV 256 (268)
T ss_dssp HTTHHHHHHHHTTCSCC
T ss_pred HCCcHHHHHHHHcCCcc
Confidence 99999999999998643
No 20
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.42 E-value=9.5e-13 Score=96.23 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC-CCee-eCCCCCcce-eEEEEeCCCh-hHHHHHHHHHHHhhcCcHHH
Q 039381 6 FSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC-KNFT-TGPTYSVGG-FGFAFPKDSA-YLADFSQAILQLSEEGKLRE 81 (138)
Q Consensus 6 ~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~-~~~~-~~~~~~~~~-~g~a~~Kgsp-l~~~in~~l~~l~~~G~~~~ 81 (138)
++.++++++|.+|++||++.+.+++.+++++.+ ..+. ++......+ ++|+++|++| |++.||++|.+|+++|++++
T Consensus 149 ~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~ 228 (246)
T 4eq9_A 149 ADFQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQGQDELKSFVDKRIKELYKDGTLEK 228 (246)
T ss_dssp CCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEETTCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHcCCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCcHHH
Confidence 589999999999999999999999999888764 3477 666665554 8999999997 99999999999999999999
Q ss_pred HHHHhcCCCCCCC
Q 039381 82 LEEAMLSPYNCST 94 (138)
Q Consensus 82 l~~kW~~~~~c~~ 94 (138)
|.+|||+.+.+..
T Consensus 229 i~~k~~~~~~~p~ 241 (246)
T 4eq9_A 229 LSKQFFGDTYLPA 241 (246)
T ss_dssp HHHHHHSSCCCCC
T ss_pred HHHHhcCCCCCCC
Confidence 9999999765443
No 21
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.42 E-value=8e-13 Score=95.14 Aligned_cols=89 Identities=19% Similarity=0.331 Sum_probs=78.9
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC-CCee-eCCCCCcceeEEEEeCCCh-hHHHHHHHHHHHhhcCc
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC-KNFT-TGPTYSVGGFGFAFPKDSA-YLADFSQAILQLSEEGK 78 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~-~~~~-~~~~~~~~~~g~a~~Kgsp-l~~~in~~l~~l~~~G~ 78 (138)
++.+++..+++++|.+|++||++.+.+.+.+++++.. ..+. ++..+....++++++|+++ +.+.+|++|.+|+++|+
T Consensus 133 ~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~g~ 212 (226)
T 1wdn_A 133 LRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGT 212 (226)
T ss_dssp EEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHHHHHHTSH
T ss_pred EEEeCCHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHHHHHHHHHHHHHHHhCCh
Confidence 5678899999999999999999999999999887763 3477 7666677889999999986 99999999999999999
Q ss_pred HHHHHHHhcCCC
Q 039381 79 LRELEEAMLSPY 90 (138)
Q Consensus 79 ~~~l~~kW~~~~ 90 (138)
+++|.+||++.+
T Consensus 213 ~~~i~~k~~~~~ 224 (226)
T 1wdn_A 213 YNEIYKKWFGTE 224 (226)
T ss_dssp HHHHHHHHHSSC
T ss_pred HHHHHHHHcCCC
Confidence 999999999864
No 22
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.42 E-value=4.8e-13 Score=97.76 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=75.3
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-e--CCCCCcceeEEEEeCCCh-hHHHHHHHHHHHhhcC
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-T--GPTYSVGGFGFAFPKDSA-YLADFSQAILQLSEEG 77 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~--~~~~~~~~~g~a~~Kgsp-l~~~in~~l~~l~~~G 77 (138)
++.+++..+++++|.+|++||++.+.+.+.+++++.++ +. + ..++...+++|+++| ++ |++.||++|.+|+++|
T Consensus 149 ~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k-~~~l~~~ln~~l~~l~~~g 226 (239)
T 3kbr_A 149 ILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPE-LCAVHPQQPFDFAEKAYLLPR-DEAFKRYVDQWLHIAEQSG 226 (239)
T ss_dssp EEECCCTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTT-EEECCCC-CCCCEEECCEECS-CHHHHHHHHHHHHHHHHHT
T ss_pred eEEeCCHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCC-cEEecCCCCccccceEEEEcC-CHHHHHHHHHHHHHHHHCC
Confidence 56789999999999999999999999999999888765 55 3 455788899999999 76 9999999999999999
Q ss_pred cHHHHHHHhcC
Q 039381 78 KLRELEEAMLS 88 (138)
Q Consensus 78 ~~~~l~~kW~~ 88 (138)
++++|.+|||+
T Consensus 227 ~~~~i~~k~~~ 237 (239)
T 3kbr_A 227 LLRQRMEHWLE 237 (239)
T ss_dssp HHHHHHHHHC-
T ss_pred cHHHHHHHHhc
Confidence 99999999997
No 23
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.42 E-value=5.3e-13 Score=96.12 Aligned_cols=86 Identities=23% Similarity=0.381 Sum_probs=74.6
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC-CCee-eCCCCCcc-----eeEEEEeCCCh-hHHHHHHHHHHH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC-KNFT-TGPTYSVG-----GFGFAFPKDSA-YLADFSQAILQL 73 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~-~~~~-~~~~~~~~-----~~g~a~~Kgsp-l~~~in~~l~~l 73 (138)
++.+++.++++++|.+|++||++.+.+.+.+++++.+ ..+. ++..+... +++++++|++| +++.||++|.+|
T Consensus 134 ~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l 213 (227)
T 3tql_A 134 IQRYPSEEDALMDLTSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGNQALLLKLNKALAAI 213 (227)
T ss_dssp EEEESSHHHHHHHHTTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTCHHHHHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999888764 2366 65544443 45999999998 999999999999
Q ss_pred hhcCcHHHHHHHhc
Q 039381 74 SEEGKLRELEEAML 87 (138)
Q Consensus 74 ~~~G~~~~l~~kW~ 87 (138)
+++|++++|.+|||
T Consensus 214 ~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 214 KANGVYAAIVQKYF 227 (227)
T ss_dssp HHTSHHHHHHHHHC
T ss_pred HhCChHHHHHHhhC
Confidence 99999999999997
No 24
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.39 E-value=1.1e-12 Score=94.83 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=76.3
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCC-----cceeEEEEeCCCh-hHHHHHHHHHHHh
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYS-----VGGFGFAFPKDSA-YLADFSQAILQLS 74 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~-----~~~~g~a~~Kgsp-l~~~in~~l~~l~ 74 (138)
++.+++..+++++|.+|++||++.+.+.+.+++++.+ .+. ++..+. ...++++++|++| +++.||++|.+|+
T Consensus 136 ~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~ 214 (229)
T 2y7i_A 136 PVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNP-DYAIMDERASDPDYYGKGLGIAVRKDNDALLQEINAALDKVK 214 (229)
T ss_dssp EEEESCHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCT-TEEECSCCBCCTTTSCCCBCCEECTTCHHHHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHcCCcCEEEechHHHHHHHHhCC-CeEEeccccccccccccceEEEEeCCCHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999888776 477 665553 2489999999988 9999999999999
Q ss_pred hcCcHHHHHHHhcC
Q 039381 75 EEGKLRELEEAMLS 88 (138)
Q Consensus 75 ~~G~~~~l~~kW~~ 88 (138)
++|++++|.+||++
T Consensus 215 ~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 215 ASPEYAQMQEKWFT 228 (229)
T ss_dssp TSHHHHHHHHHHHC
T ss_pred hCChHHHHHHHHcC
Confidence 99999999999986
No 25
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.39 E-value=2.1e-12 Score=97.94 Aligned_cols=89 Identities=21% Similarity=0.232 Sum_probs=79.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC-CCee-eC-CCCC-cceeEEEEeCCCh-hHHHHHHHHHHHhhc
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC-KNFT-TG-PTYS-VGGFGFAFPKDSA-YLADFSQAILQLSEE 76 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~-~~~~-~~-~~~~-~~~~g~a~~Kgsp-l~~~in~~l~~l~~~ 76 (138)
++.+++..+++++|.+|++||++.+.+.+.+++++.+ ..+. ++ ..+. ...++|+++|+++ |++.||++|.+|+++
T Consensus 186 ~~~~~~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~~~~l~~~i~~al~~l~~~ 265 (283)
T 2yln_A 186 LVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKAD 265 (283)
T ss_dssp EEECSSHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESSCHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCCCHHHHHHHHHHHHHHHHC
Confidence 5678899999999999999999999999999887764 2377 77 6777 7889999999987 999999999999999
Q ss_pred CcHHHHHHHhcCCC
Q 039381 77 GKLRELEEAMLSPY 90 (138)
Q Consensus 77 G~~~~l~~kW~~~~ 90 (138)
|++++|.+||++.+
T Consensus 266 g~~~~i~~k~~~~~ 279 (283)
T 2yln_A 266 GTLKKLGEQFFGKD 279 (283)
T ss_dssp THHHHHHHHHHSSC
T ss_pred CcHHHHHHHHcCCC
Confidence 99999999999864
No 26
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.38 E-value=1.7e-12 Score=96.08 Aligned_cols=87 Identities=23% Similarity=0.356 Sum_probs=76.5
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCC---CcceeEEEEeCCCh-hHHHHHHHHHHHhhc
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTY---SVGGFGFAFPKDSA-YLADFSQAILQLSEE 76 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~---~~~~~g~a~~Kgsp-l~~~in~~l~~l~~~ 76 (138)
++.+++.++++++|.+|++||++.+.+.+.+++++.+. +. ....+ ...+++++++|++| +++.+|++|.+|+++
T Consensus 174 ~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~ 252 (269)
T 4i62_A 174 LVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPD-LAIADLNFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKES 252 (269)
T ss_dssp EEEESCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTT-EEECSCCCCC-CCCEECCEEESSCHHHHHHHHHHHHHHHHT
T ss_pred EEecCCHHHHHHHHHcCCCCEEEeChHHHHHHHHhCCC-CeEEeeccCCCcccceEEEEeCCCHHHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999998888764 55 44333 36789999999998 999999999999999
Q ss_pred CcHHHHHHHhcCC
Q 039381 77 GKLRELEEAMLSP 89 (138)
Q Consensus 77 G~~~~l~~kW~~~ 89 (138)
|++++|.+|||+.
T Consensus 253 g~~~~i~~k~~~~ 265 (269)
T 4i62_A 253 GELDKLIEDAFKA 265 (269)
T ss_dssp THHHHHHHHHHHH
T ss_pred ChHHHHHHHHhCC
Confidence 9999999999975
No 27
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.36 E-value=3.7e-12 Score=95.97 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=79.9
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC--CCee-eCCCCCcceeEEEEeCCCh-hHHHHHHHHHHHhhcC
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC--KNFT-TGPTYSVGGFGFAFPKDSA-YLADFSQAILQLSEEG 77 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~--~~~~-~~~~~~~~~~g~a~~Kgsp-l~~~in~~l~~l~~~G 77 (138)
++.+++.++++++|.+|++||++.+.+.+.+++++.+ ..+. ++..+....++|+++|+++ +++.+|++|.+|+++|
T Consensus 158 ~~~~~~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g 237 (287)
T 2vha_A 158 IISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSG 237 (287)
T ss_dssp EEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECTTCHHHHHHHHHHHHHHHHTT
T ss_pred EEEcCCHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCceEEEEeCCCHHHHHHHHHHHHHHHhCc
Confidence 5678999999999999999999999999988887642 3477 8877888899999999987 9999999999999999
Q ss_pred cHHHHHHHhcCCC
Q 039381 78 KLRELEEAMLSPY 90 (138)
Q Consensus 78 ~~~~l~~kW~~~~ 90 (138)
++++|.+||+...
T Consensus 238 ~~~~i~~k~~~~~ 250 (287)
T 2vha_A 238 EAEKWFDKWFKNP 250 (287)
T ss_dssp HHHHHHHHHHHSC
T ss_pred hHHHHHHHHcCCC
Confidence 9999999999864
No 28
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.36 E-value=3.4e-12 Score=97.04 Aligned_cols=87 Identities=20% Similarity=0.191 Sum_probs=79.6
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCccee-EEEEeCCCh-hHHHHHHHHHHHhhcCc
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGF-GFAFPKDSA-YLADFSQAILQLSEEGK 78 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~-g~a~~Kgsp-l~~~in~~l~~l~~~G~ 78 (138)
++.+++.++++++|.+|++||++.+.+.+.+++++.+. +. ++..+....+ +|+++|++| |++.||++|.+|+++|+
T Consensus 188 ~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~al~~l~~~g~ 266 (291)
T 2yjp_A 188 LLKFDQNTETFDALKDGRGVALAHDNALLWAWAKENPN-FEVAIGNLGPAEFIAPAVQKGNADLLNWVNGEIAAMKKDGR 266 (291)
T ss_dssp EEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTT-EEEEECCSSSCEEECCEEETTCHHHHHHHHHHHHHHHHHSH
T ss_pred EEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCC-eEEcCCcccCCcceEEEEeCCCHHHHHHHHHHHHHHHhCCh
Confidence 56788999999999999999999999999998887765 77 7777888888 999999998 99999999999999999
Q ss_pred HHHHHHHhcCC
Q 039381 79 LRELEEAMLSP 89 (138)
Q Consensus 79 ~~~l~~kW~~~ 89 (138)
+++|.+||++.
T Consensus 267 ~~~i~~k~~~~ 277 (291)
T 2yjp_A 267 LKAAYEKTLLP 277 (291)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHhccc
Confidence 99999999975
No 29
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.35 E-value=2e-12 Score=97.93 Aligned_cols=87 Identities=11% Similarity=0.014 Sum_probs=79.0
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCccee-EEEEeCCCh-hHHHHHHHHHHHhhcCc
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGF-GFAFPKDSA-YLADFSQAILQLSEEGK 78 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~-g~a~~Kgsp-l~~~in~~l~~l~~~G~ 78 (138)
++.+++.++++++|.+|++||++.+.+.+.+++++.++ +. ++..+....+ +|+++|++| +++.+|++|.+|+++|+
T Consensus 177 ~~~~~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~ 255 (292)
T 1xt8_A 177 TLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPD-FKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQF 255 (292)
T ss_dssp EEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTT-EEEEEEEEEEEEEECCEEETTCHHHHHHHHHHHHHHHTTTH
T ss_pred EEEcCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCC-eEEcccccccCceeEEEEeCCCHHHHHHHHHHHHHHHhCcH
Confidence 56789999999999999999999999999998887765 77 7766777788 999999988 99999999999999999
Q ss_pred HHHHHHHhcCC
Q 039381 79 LRELEEAMLSP 89 (138)
Q Consensus 79 ~~~l~~kW~~~ 89 (138)
+++|.+||++.
T Consensus 256 ~~~i~~k~~~~ 266 (292)
T 1xt8_A 256 FHKAYDETLKA 266 (292)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHhcCC
Confidence 99999999984
No 30
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.35 E-value=2.5e-12 Score=92.63 Aligned_cols=89 Identities=20% Similarity=0.385 Sum_probs=78.3
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC-CCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC-KNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKL 79 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~-~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~ 79 (138)
++.+++..+++++|.+|++|+++.+.+.+.+++++.+ ..+. ++..+....++++++|++++.+.+|.+|.+|+++|++
T Consensus 134 ~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~g~~ 213 (228)
T 2pyy_A 134 VLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGTY 213 (228)
T ss_dssp EEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTTHHHHHHHHHHHHHTTHH
T ss_pred eEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHHHHHHHHHHHHHHhCCcH
Confidence 5678899999999999999999999999988887753 2477 6666777789999999988999999999999999999
Q ss_pred HHHHHHhcCCC
Q 039381 80 RELEEAMLSPY 90 (138)
Q Consensus 80 ~~l~~kW~~~~ 90 (138)
++|.+||++..
T Consensus 214 ~~i~~k~~~~~ 224 (228)
T 2pyy_A 214 QSLYDKWFDPK 224 (228)
T ss_dssp HHHHHHHHCC-
T ss_pred HHHHHHHcCCc
Confidence 99999999863
No 31
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.34 E-value=2.7e-12 Score=93.56 Aligned_cols=90 Identities=21% Similarity=0.351 Sum_probs=75.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHH-HHHhc-CCCee-eCCCCCcc-----eeEEEEeCCCh-hHHHHHHHHHH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKL-FLAKN-CKNFT-TGPTYSVG-----GFGFAFPKDSA-YLADFSQAILQ 72 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~-~~~~~-~~~~~-~~~~~~~~-----~~g~a~~Kgsp-l~~~in~~l~~ 72 (138)
++.+++..+++++|.+|++||++.+.+.+.+ ++++. ...+. ++.++... +++|+++|+++ |++.+|++|.+
T Consensus 137 ~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~ 216 (239)
T 1lst_A 137 VVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTE 216 (239)
T ss_dssp EEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTCHHHHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEEeCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999888764 44443 23477 76666543 79999999998 99999999999
Q ss_pred HhhcCcHHHHHHHhcCCCC
Q 039381 73 LSEEGKLRELEEAMLSPYN 91 (138)
Q Consensus 73 l~~~G~~~~l~~kW~~~~~ 91 (138)
|+++|++++|.+||++.+.
T Consensus 217 l~~~G~~~~i~~k~~~~~~ 235 (239)
T 1lst_A 217 LRQDGTYDKMAKKYFDFNV 235 (239)
T ss_dssp HHHTTHHHHHHHTTCSSCT
T ss_pred HHHCccHHHHHHHHcCCCC
Confidence 9999999999999998643
No 32
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.30 E-value=6.4e-12 Score=94.15 Aligned_cols=87 Identities=7% Similarity=0.127 Sum_probs=74.5
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhc-CCCee-eCCC-CCcceeEEEEeCCCh-hHHHHHHHHHHHhhcC
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKN-CKNFT-TGPT-YSVGGFGFAFPKDSA-YLADFSQAILQLSEEG 77 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~-~~~~~-~~~~-~~~~~~g~a~~Kgsp-l~~~in~~l~~l~~~G 77 (138)
++.+++.++++++|.+|++||++.+.+++.+++++. ...+. ++.. ....+++|+++|++| |++.||++|.+|.++|
T Consensus 163 ~~~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~~ 242 (267)
T 3mpk_A 163 VVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTELMSILNKALYSISNDE 242 (267)
T ss_dssp EEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCHHHHHHHHHHHHTSCHHH
T ss_pred EEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCHHHHHHHHHHHHhCCHHH
Confidence 577899999999999999999999999999988874 33466 5442 347889999999998 9999999999999996
Q ss_pred cHHHHHHHhcCC
Q 039381 78 KLRELEEAMLSP 89 (138)
Q Consensus 78 ~~~~l~~kW~~~ 89 (138)
+++|.+||++.
T Consensus 243 -~~~i~~kw~~~ 253 (267)
T 3mpk_A 243 -LASIISRWRGS 253 (267)
T ss_dssp -HHHHHHTTC--
T ss_pred -HHHHHHhhccC
Confidence 99999999986
No 33
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.30 E-value=1.5e-11 Score=92.02 Aligned_cols=90 Identities=17% Similarity=0.245 Sum_probs=77.9
Q ss_pred CeeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCC-Cee-eCCCC--CcceeEEEEeCCChhHHHHHHHHHHHhhc
Q 039381 1 NIEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCK-NFT-TGPTY--SVGGFGFAFPKDSAYLADFSQAILQLSEE 76 (138)
Q Consensus 1 ~i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~-~~~-~~~~~--~~~~~g~a~~Kgspl~~~in~~l~~l~~~ 76 (138)
+++.+++..+++++|.+|++||++.+.+.+.+++++... .+. ++... ....++|+++|+..+++.+|++|.+|+++
T Consensus 171 ~i~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~ 250 (272)
T 2pvu_A 171 HIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVINS 250 (272)
T ss_dssp TEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETTCTTHHHHHHHHHHHHHT
T ss_pred eEEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCCHHHHHHHHHHHHHHHhC
Confidence 356789999999999999999999999999998877532 377 66553 67789999999944999999999999999
Q ss_pred CcHHHHHHHhcCCC
Q 039381 77 GKLRELEEAMLSPY 90 (138)
Q Consensus 77 G~~~~l~~kW~~~~ 90 (138)
|++++|.+||++..
T Consensus 251 g~~~~i~~k~~~~~ 264 (272)
T 2pvu_A 251 GKYTEIYKKWFGKE 264 (272)
T ss_dssp THHHHHHHHHHSSC
T ss_pred ChHHHHHHHHcCCC
Confidence 99999999999864
No 34
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.25 E-value=1.7e-11 Score=92.03 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=74.0
Q ss_pred eeecCCHHHH--HHHHHcCCceEEEecHHHHHHHHH-hcC-CCee-e-CCCCCcceeEEEEeCCCh-hHHHHHHHHHHHh
Q 039381 2 IEPIFSENRH--RQALTSGEIAAAFLEVPYVKLFLA-KNC-KNFT-T-GPTYSVGGFGFAFPKDSA-YLADFSQAILQLS 74 (138)
Q Consensus 2 i~~~~~~~e~--~~aL~~G~vdA~i~d~~~l~~~~~-~~~-~~~~-~-~~~~~~~~~g~a~~Kgsp-l~~~in~~l~~l~ 74 (138)
++.+++.+++ +++|.+|++| ++.+.+.+.+++. +.+ ..+. + +.++...+++|+++|++| |++.||++|.+|+
T Consensus 154 ~~~~~~~~~~~l~~~L~~GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~al~~l~ 232 (271)
T 2iee_A 154 EVIYDNATNEQYLKDVANGRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMS 232 (271)
T ss_dssp EEECSSCCHHHHHHHHHHTSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEETTCHHHHHHHHHHHHHHH
T ss_pred eEEeCChhhHHHHHHHHcCCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEEEcCCCHHHHHHHHHHHHHHH
Confidence 5678888888 9999999999 7777676666655 443 3466 5 667778889999999988 9999999999999
Q ss_pred hcCcHHHHHHHhcC-CC
Q 039381 75 EEGKLRELEEAMLS-PY 90 (138)
Q Consensus 75 ~~G~~~~l~~kW~~-~~ 90 (138)
++|++++|.+||++ .+
T Consensus 233 ~~G~~~~i~~k~~~~~~ 249 (271)
T 2iee_A 233 KDGSLTKLSKQFFNKAD 249 (271)
T ss_dssp HHTHHHHHHHHHTTTCC
T ss_pred HCCCHHHHHHHhCCccc
Confidence 99999999999998 54
No 35
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.25 E-value=2.2e-11 Score=90.71 Aligned_cols=87 Identities=21% Similarity=0.242 Sum_probs=76.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLR 80 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~ 80 (138)
++.+++.++++++|.+|++||++.+.+++.++.++....+. ........+++|+++|+++|++.||++|.+ ..+++++
T Consensus 167 ~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ln~~l~~-~g~~~l~ 245 (259)
T 4dz1_A 167 VKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSPVRDDFNLWLKE-QGPQKIS 245 (259)
T ss_dssp CEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHH-HCHHHHH
T ss_pred eEecCCHHHHHHHHHcCCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeCChHHHHHHHHHHHh-CCCeehH
Confidence 56789999999999999999999999998888776543466 655566789999999999999999999999 8889999
Q ss_pred HHHHHhcCC
Q 039381 81 ELEEAMLSP 89 (138)
Q Consensus 81 ~l~~kW~~~ 89 (138)
++.++|...
T Consensus 246 ~~~~~~~~~ 254 (259)
T 4dz1_A 246 GIVDSWMKH 254 (259)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHhh
Confidence 999999975
No 36
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.22 E-value=3.7e-11 Score=88.70 Aligned_cols=86 Identities=21% Similarity=0.211 Sum_probs=73.6
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC-CCee-eCCCCC---cceeEEEEeCCCh-hHHHHHHHHHHHhh
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC-KNFT-TGPTYS---VGGFGFAFPKDSA-YLADFSQAILQLSE 75 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~-~~~~-~~~~~~---~~~~g~a~~Kgsp-l~~~in~~l~~l~~ 75 (138)
++.+++..+++++|.+|++||++.+.+.+.+++++.+ ..+. +.. +. ...++++++|+++ |++.||++|.+|++
T Consensus 149 ~~~~~~~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~~~~ 227 (257)
T 2q88_A 149 VIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAP-VEGAPVYCDGAAFRKGDEALRDAFDVELAKLKE 227 (257)
T ss_dssp EEECSSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTTEEEECS-CBTCCCEEBCCEECGGGHHHHHHHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHcCCCcEEEcCHHHHHHHHHhCCCcceeeecc-cCCccccceEEEEcCCCHHHHHHHHHHHHHHHh
Confidence 5778999999999999999999999999999887764 3355 543 32 3578899999987 99999999999999
Q ss_pred cCcHHHHHHHhcC
Q 039381 76 EGKLRELEEAMLS 88 (138)
Q Consensus 76 ~G~~~~l~~kW~~ 88 (138)
+|++++|.+||.-
T Consensus 228 ~g~~~~i~~k~~~ 240 (257)
T 2q88_A 228 SGEFAKIIEPYGF 240 (257)
T ss_dssp HTHHHHHHGGGTC
T ss_pred CCcHHHHHHHhCC
Confidence 9999999999943
No 37
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=98.95 E-value=7.3e-10 Score=81.14 Aligned_cols=82 Identities=10% Similarity=0.144 Sum_probs=70.2
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCeeeCCCCCcceeEEEEeCCCh-hHHHHHHHHHHHhhcCcHH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFTTGPTYSVGGFGFAFPKDSA-YLADFSQAILQLSEEGKLR 80 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~~~~~~~~~~~g~a~~Kgsp-l~~~in~~l~~l~~~G~~~ 80 (138)
++.+++..+++++|.+|++|+++.+.+.+.+++++.+. .++..+....++++++|++| +++.+|++|.+++++ ++
T Consensus 176 ~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~~~~~--~~ 251 (259)
T 2v25_A 176 FSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSE--ILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEHKNE--ID 251 (259)
T ss_dssp EEEESSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTEE--ECSCCCSEEEECCEEETTCHHHHHHHHHHHHHTHHH--HH
T ss_pred EEEeCCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCCC--ccccccccceeEEEEcCCCHHHHHHHHHHHHHHHHH--HH
Confidence 46789999999999999999999999888777655432 24445667789999999986 999999999999999 99
Q ss_pred HHHHHhc
Q 039381 81 ELEEAML 87 (138)
Q Consensus 81 ~l~~kW~ 87 (138)
+|.+||.
T Consensus 252 ~i~~k~~ 258 (259)
T 2v25_A 252 ALAKKWG 258 (259)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9999995
No 38
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.55 E-value=2.9e-07 Score=71.88 Aligned_cols=85 Identities=8% Similarity=0.023 Sum_probs=70.4
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhc---CCCee-eCCCCCcceeEEEEeCC-Ch-hHHHHHHHHHHHhhcC
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKN---CKNFT-TGPTYSVGGFGFAFPKD-SA-YLADFSQAILQLSEEG 77 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~---~~~~~-~~~~~~~~~~g~a~~Kg-sp-l~~~in~~l~~l~~~G 77 (138)
.+.+.++++++|.+|++||++.+.+.+..++++. ...+. +........++|+++|+ ++ +++.||.+|.+|.++|
T Consensus 162 ~~~~~~~a~~al~~G~vDa~~~~~~~~~~~~~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~ 241 (321)
T 3p7i_A 162 VNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTP 241 (321)
T ss_dssp EECCHHHHHHHHHTTSSSEEEEEHHHHHTHHHHCHHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSH
T ss_pred ecCCHHHHHHHHHCCCceEEEechHHHHHHHHhCcchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCH
Confidence 4567889999999999999999999888887653 13477 66555556789999999 55 9999999999999999
Q ss_pred cHHHHHHHhcC
Q 039381 78 KLRELEEAMLS 88 (138)
Q Consensus 78 ~~~~l~~kW~~ 88 (138)
+++++.+++.-
T Consensus 242 ~~~~~l~~~g~ 252 (321)
T 3p7i_A 242 EEKAVLERLGW 252 (321)
T ss_dssp HHHHHHHHHTE
T ss_pred HHHHHHHhcCc
Confidence 99999988743
No 39
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.53 E-value=2.3e-07 Score=71.90 Aligned_cols=84 Identities=6% Similarity=0.044 Sum_probs=69.3
Q ss_pred cCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC---CCee-eCCCCCcceeEEEEeCC-Ch-hHHHHHHHHHHHhhcCc
Q 039381 5 IFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC---KNFT-TGPTYSVGGFGFAFPKD-SA-YLADFSQAILQLSEEGK 78 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~---~~~~-~~~~~~~~~~g~a~~Kg-sp-l~~~in~~l~~l~~~G~ 78 (138)
+.+.++++++|.+|++||++.+.+.+..++++.+ ..+. +........++|+++|+ ++ +++.||.+|.++.++|+
T Consensus 154 ~g~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~ 233 (310)
T 3n5l_A 154 NSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAE 233 (310)
T ss_dssp ECCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHH
T ss_pred cCCHHHHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChh
Confidence 4567789999999999999999998888877642 2366 65544455689999999 55 99999999999999999
Q ss_pred HHHHHHHhcC
Q 039381 79 LRELEEAMLS 88 (138)
Q Consensus 79 ~~~l~~kW~~ 88 (138)
++++.++|.-
T Consensus 234 ~~~~l~~~g~ 243 (310)
T 3n5l_A 234 QKKVLADLQW 243 (310)
T ss_dssp HHHHHHHTTE
T ss_pred HHHHHHhcCc
Confidence 9999998843
No 40
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.82 E-value=0.00019 Score=55.88 Aligned_cols=85 Identities=11% Similarity=0.074 Sum_probs=64.5
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC-CCeee-CC----------C--------CC-cceeEEEEeCCCh
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC-KNFTT-GP----------T--------YS-VGGFGFAFPKDSA 61 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~-~~~~~-~~----------~--------~~-~~~~g~a~~Kgsp 61 (138)
+.|+...+++++|.+|++|+++.+.+.+..+++... ..+.+ +. + +. ...+|+++|+|-|
T Consensus 169 Vpy~G~~~a~~aL~~G~VD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p 248 (312)
T 2f5x_A 169 IPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTP 248 (312)
T ss_dssp EECSSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCC
T ss_pred eccCChHHHHHHHHcCCccEEEechHHHHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCC
Confidence 579999999999999999999998777766665431 11211 10 0 11 1247999999943
Q ss_pred --hHHHHHHHHHHHhhcCcHHHHHHHhc
Q 039381 62 --YLADFSQAILQLSEEGKLRELEEAML 87 (138)
Q Consensus 62 --l~~~in~~l~~l~~~G~~~~l~~kW~ 87 (138)
+++.+|++|.++.+++++++..+++.
T Consensus 249 ~~vv~~l~~al~~~~~~p~~~~~~~~~g 276 (312)
T 2f5x_A 249 KPVVDKLVKSLQAGLADPKFQERMKQLG 276 (312)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 99999999999999999998888764
No 41
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=97.79 E-value=0.00015 Score=56.02 Aligned_cols=86 Identities=10% Similarity=0.118 Sum_probs=65.2
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC-CCee-eCC------------------CCC-cceeEEEEeCCC
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC-KNFT-TGP------------------TYS-VGGFGFAFPKDS 60 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~-~~~~-~~~------------------~~~-~~~~g~a~~Kgs 60 (138)
.+.|++..+++++|.+|++|+++.+.+.+..+++... ..+. .+. .+. ...+|++.|+|-
T Consensus 159 ~Vpy~g~~~a~~al~~G~vD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~ 238 (301)
T 2qpq_A 159 HVPYKGCGPALNDVLGSQIGLAVVTASSAIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGAT 238 (301)
T ss_dssp EEECSSHHHHHHHHHTTSSSCEEEEHHHHHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTC
T ss_pred EeccCChHHHHHHHHCCCccEEEEcHHHHHHHHhcCCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCC
Confidence 3579999999999999999999998777766665421 1111 111 011 234899999994
Q ss_pred h--hHHHHHHHHHHHhhcCcHHHHHHHhc
Q 039381 61 A--YLADFSQAILQLSEEGKLRELEEAML 87 (138)
Q Consensus 61 p--l~~~in~~l~~l~~~G~~~~l~~kW~ 87 (138)
| +++.++++|.++.+++++++..+++.
T Consensus 239 p~~vv~~l~~al~~~~~~~~~~~~~~~~g 267 (301)
T 2qpq_A 239 PMAVRQKLYDGIAKVMQRDDVQKKLADLG 267 (301)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 3 99999999999999999999888874
No 42
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=97.75 E-value=4.9e-05 Score=57.11 Aligned_cols=65 Identities=9% Similarity=-0.006 Sum_probs=46.5
Q ss_pred eeec-CCHHHHHHHHHcCCceEEEe--cHHHHHHHHHhcCCCee---eCC---CCCcceeEEEEeCCCh-hHHHHHHHHH
Q 039381 2 IEPI-FSENRHRQALTSGEIAAAFL--EVPYVKLFLAKNCKNFT---TGP---TYSVGGFGFAFPKDSA-YLADFSQAIL 71 (138)
Q Consensus 2 i~~~-~~~~e~~~aL~~G~vdA~i~--d~~~l~~~~~~~~~~~~---~~~---~~~~~~~g~a~~Kgsp-l~~~in~~l~ 71 (138)
+..+ .+..+++++|.+|+|||+++ |.++.. ++++ +. +.. ........++++||++ |++.+|+.|.
T Consensus 137 Ve~ve~~y~~~i~~L~~G~IDA~Iwn~d~~~a~----~~~~-l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~~I~ 211 (231)
T 2ozz_A 137 VERVDLSYHESLQRIVKGDVDAVIWNVVAENEL----TMLG-LEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVVD 211 (231)
T ss_dssp CEEEECCHHHHHHHHHHTSCCEEEEEC-CHHHH----HHTT-EEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHHCC
T ss_pred EEEEECCHHHHHHHHHcCCccEEEEcCcchhhh----cCCC-cceeccccccccccCCceEEEEECCCHHHHHHHHHHhH
Confidence 4567 88999999999999999999 888766 3333 33 222 2223344499999975 9999987654
No 43
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=97.70 E-value=0.00028 Score=54.94 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=65.2
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC-CCee-eCC----------C--------CC-cceeEEEEeCCC
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC-KNFT-TGP----------T--------YS-VGGFGFAFPKDS 60 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~-~~~~-~~~----------~--------~~-~~~~g~a~~Kgs 60 (138)
.+.|+...+++++|.+|++|+++.+.+.+..+++... ..+. .+. + +. ...+|++.|+|-
T Consensus 172 ~Vpy~G~~~a~~al~~G~vD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~ 251 (314)
T 2dvz_A 172 HVPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGT 251 (314)
T ss_dssp EEECSSHHHHHHHHHHTSSSEEEEEHHHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTC
T ss_pred EcccCCHHHHHHHHHcCCceEEEEcHHHHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCC
Confidence 3579999999999999999999998777766665431 1122 111 0 11 224899999995
Q ss_pred h--hHHHHHHHHHHHhhcCcHHHHHHHhc
Q 039381 61 A--YLADFSQAILQLSEEGKLRELEEAML 87 (138)
Q Consensus 61 p--l~~~in~~l~~l~~~G~~~~l~~kW~ 87 (138)
| +++.+++++.++.+++++++..+++.
T Consensus 252 p~~vv~~l~~al~~~~~~p~~~~~~~~~g 280 (314)
T 2dvz_A 252 PMDVVNKLRDAAVVALKDPKVIKALDDQG 280 (314)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 3 99999999999999999999888874
No 44
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=96.73 E-value=0.0077 Score=45.16 Aligned_cols=83 Identities=11% Similarity=0.125 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eC--CCCCcceeEEEEe----CCCh-hHHHHHHHHHH----
Q 039381 5 IFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TG--PTYSVGGFGFAFP----KDSA-YLADFSQAILQ---- 72 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~--~~~~~~~~g~a~~----Kgsp-l~~~in~~l~~---- 72 (138)
+.+..+++++|.+|++||++.+.+.+.+..++. . +. +. ..+......++++ +.+| +++.+++++.+
T Consensus 138 ~~~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~ 215 (308)
T 2x26_A 138 YLTPADARAAFQQGNVDAWAIWDPYYSAALLQG-G-VRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADAL 215 (308)
T ss_dssp ECCHHHHHHHHHTTSSSEEEEETTHHHHHHHHS-S-EEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred ecChHHHHHHHHcCCCCEEEecchhHHHHHhcC-C-cEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 556889999999999999999888887766553 2 44 32 2222222223443 3455 88888888876
Q ss_pred HhhcC-cHHHHHHHhcCC
Q 039381 73 LSEEG-KLRELEEAMLSP 89 (138)
Q Consensus 73 l~~~G-~~~~l~~kW~~~ 89 (138)
+.+++ +..++..+|++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~ 233 (308)
T 2x26_A 216 TRSQREQSIALLAKTMGL 233 (308)
T ss_dssp HHHTHHHHHHHHHHHHTC
T ss_pred HHHCHHHHHHHHHHHhCc
Confidence 45565 688888898863
No 45
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=96.71 E-value=0.0043 Score=47.68 Aligned_cols=83 Identities=10% Similarity=0.092 Sum_probs=58.3
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCc--ceeEEEEeCC----Ch-----hHHHHHHHHHHHh
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSV--GGFGFAFPKD----SA-----YLADFSQAILQLS 74 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~--~~~g~a~~Kg----sp-----l~~~in~~l~~l~ 74 (138)
+.++++++|.+|++||++...|.......+...... ....+.. ....++++++ +| +++.+++++..+.
T Consensus 190 ~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~ 269 (341)
T 3un6_A 190 SPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMN 269 (341)
T ss_dssp CGGGHHHHHHTTSCSEEEEETTHHHHHHHSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHcCCCCEEEecCCHHHHHHhcCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999988887766655432222 3333322 2366777764 44 5667777888888
Q ss_pred hcCcHHHHHHHhcCC
Q 039381 75 EEGKLRELEEAMLSP 89 (138)
Q Consensus 75 ~~G~~~~l~~kW~~~ 89 (138)
++++..++..+|++.
T Consensus 270 ~~~~~~~~~~~~~~~ 284 (341)
T 3un6_A 270 DRKQSVDIMTHHFKQ 284 (341)
T ss_dssp SHHHHHHHHHHHSSS
T ss_pred hCHHHHHHHHHHhCc
Confidence 887666999999874
No 46
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=94.64 E-value=0.11 Score=39.21 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=50.1
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCC----Ch-hH----HHHHHHHHHHhhc
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKD----SA-YL----ADFSQAILQLSEE 76 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kg----sp-l~----~~in~~l~~l~~~ 76 (138)
+.++++++|.+|++||++...|.......+....+. ....+......++++++ +| +. +.+.++...+.++
T Consensus 166 ~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a~~~~~~~ 245 (324)
T 3ksx_A 166 SPANARAAFAAGQVDAWAIWDPWYSALTLDGSARLLANGEGLGLTGGFFLSSRRYATAWGPFVQQVMGTLNQADGLLERD 245 (324)
T ss_dssp CHHHHHHHHHTTCCSEEEEETTHHHHHHHTTSEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCCEEEEccHHHHHHHhcCCcEEEecccccCCCccEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHHC
Confidence 678999999999999999888877766554321122 33334334455666654 44 44 4444444555554
Q ss_pred -CcHHHHHHHhcC
Q 039381 77 -GKLRELEEAMLS 88 (138)
Q Consensus 77 -G~~~~l~~kW~~ 88 (138)
.+..++..++++
T Consensus 246 p~e~~~~~~~~~~ 258 (324)
T 3ksx_A 246 RAGSIKTLAQVSG 258 (324)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHC
Confidence 355566666654
No 47
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=93.91 E-value=0.15 Score=38.29 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=28.9
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhc
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKN 37 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~ 37 (138)
++.+++.++++++|.+|++||++...|.......+.
T Consensus 170 ~~~~~~~~~~~~al~~G~vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 170 FIGVGAGAGAVTALRSGQIDAISNTDPVVSMLETSG 205 (346)
T ss_dssp EEECCSSHHHHHHHHHTSCSEEEEETTHHHHHHHTT
T ss_pred EEecCCcHHHHHHHHcCCccEEEecchhHHHHHhCC
Confidence 456677789999999999999999888776655543
No 48
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=93.21 E-value=0.15 Score=37.64 Aligned_cols=71 Identities=17% Similarity=0.001 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHcCCceEEEec-HHHHHHHHHhcCCCee-eCC----CC-Cc-ceeEEEEeCC-Ch-hHHHHHHHHHHHh
Q 039381 5 IFSENRHRQALTSGEIAAAFLE-VPYVKLFLAKNCKNFT-TGP----TY-SV-GGFGFAFPKD-SA-YLADFSQAILQLS 74 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i~d-~~~l~~~~~~~~~~~~-~~~----~~-~~-~~~g~a~~Kg-sp-l~~~in~~l~~l~ 74 (138)
+-+.++++++|.+|++||++.. .+... +.+..-..+. ++. .. .. ...+++++++ +| +++.+++++.+..
T Consensus 130 ~~~~~~~~~al~~G~vDa~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~ 208 (280)
T 1zbm_A 130 EMPFDRIIQAVLDEEVDAGLLIHEGQIT-YADYGLKCVLDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESI 208 (280)
T ss_dssp ECCGGGHHHHHHTTSSSEEEECSGGGGT-GGGGTCEEEEEHHHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHcCCCCEEEEechHHhH-HHhcCCeEeccHHHHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHH
Confidence 4466789999999999998854 34433 2222111111 211 11 11 2346889998 77 8889888888766
Q ss_pred hc
Q 039381 75 EE 76 (138)
Q Consensus 75 ~~ 76 (138)
+.
T Consensus 209 ~~ 210 (280)
T 1zbm_A 209 AF 210 (280)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 49
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=91.94 E-value=0.22 Score=37.08 Aligned_cols=59 Identities=19% Similarity=0.034 Sum_probs=39.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCCh
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSA 61 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgsp 61 (138)
++.+.+..+.+++|.+|++|..+...........+.. .+. ++..+...+.+++++++++
T Consensus 38 ~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~l~~~~~s~ 97 (302)
T 3ix1_A 38 IVFPTNPTDPIQLTASGAIPLALSYQPDVILARSKDL-PVVSVASVVRSPLNHVMFLAEQD 97 (302)
T ss_dssp EECCSSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTC-CEEEEEEEECSCCEEEEEEGGGC
T ss_pred EecCCCCchHHHHHHCCCCCEEecCHHHHHHHHHCCC-CEEEEEEEeccCCEEEEEECCCC
Confidence 4456666789999999999999887443333333332 366 6655555667888887654
No 50
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=91.72 E-value=0.38 Score=38.10 Aligned_cols=86 Identities=8% Similarity=0.082 Sum_probs=52.3
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee--eCCCCCc-ceeEEEEeCC----Ch-----hHHHHHHHH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT--TGPTYSV-GGFGFAFPKD----SA-----YLADFSQAI 70 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~--~~~~~~~-~~~g~a~~Kg----sp-----l~~~in~~l 70 (138)
+.+ ..++++++|++|++||++...|.......+...... ..+.+.. ....++++++ +| +++.++++.
T Consensus 189 v~~-~~~~~~~aL~~G~vDa~~~~eP~~~~~~~~g~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~ 267 (417)
T 2g29_A 189 IVV-PPAQMVANVKVNAMESFCVGEPWPLQTVNQGVGYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQ 267 (417)
T ss_dssp EEC-CGGGHHHHHHTTSCSEEEEETTHHHHHHHHTSCEEEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EEC-CHHHHHHHHHcCCCCEEEeCCCHHHHHHHcCCCEEEEechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHH
Confidence 444 457899999999999999888877666655432122 2222222 2367888864 44 445566666
Q ss_pred HHHhh--c-CcHHHHHH--HhcCC
Q 039381 71 LQLSE--E-GKLRELEE--AMLSP 89 (138)
Q Consensus 71 ~~l~~--~-G~~~~l~~--kW~~~ 89 (138)
..+.+ + .+..++.. +|++.
T Consensus 268 ~~~~~~~n~~e~~~~l~~~~~~~~ 291 (417)
T 2g29_A 268 QWCDQAENKEEMCQILSKREWFKV 291 (417)
T ss_dssp HHHHCGGGHHHHHHHHHSTTTTCC
T ss_pred HHHhCCcCHHHHHHHhcccccCCc
Confidence 66765 2 34444444 36653
No 51
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=91.67 E-value=0.45 Score=35.81 Aligned_cols=58 Identities=17% Similarity=0.085 Sum_probs=37.5
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec-HHHHHHHHHhcCCCee-eCCCC-CcceeEEEEeCCCh
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE-VPYVKLFLAKNCKNFT-TGPTY-SVGGFGFAFPKDSA 61 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d-~~~l~~~~~~~~~~~~-~~~~~-~~~~~g~a~~Kgsp 61 (138)
++.|++..+.+++|.+|++|..+.. .+.+.. ..+.. .+. +.... ....++++++++++
T Consensus 62 ~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~-~~~g~-~~~~v~~~~~~~~~~~lvv~~~s~ 122 (324)
T 3ksx_A 62 WVEFPAGPQLLEALNVGSIDLGGAGDIPPLFA-QAAGA-DLLYVGWVPPTPKAETILVPSKSA 122 (324)
T ss_dssp EEEESSHHHHHHHHHTTSCSEEEEESHHHHHH-HHTTC-CEEEEEEECCCGGGEEEEEETTCS
T ss_pred EEECCCHHHHHHHHHCCCCCEEeecCHHHHHH-HhcCC-CEEEEEEecCCCCceEEEEeCCCC
Confidence 5678889999999999999997664 444332 23322 355 44322 33467788877755
No 52
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=91.33 E-value=0.46 Score=36.12 Aligned_cols=58 Identities=17% Similarity=0.001 Sum_probs=38.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCCh
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSA 61 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgsp 61 (138)
++.+.+..+.+++|.+|++|+.+...........+.. .+. +... ...+.+++++++++
T Consensus 86 ~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~-~~~~v~~~-~~~~~~ivv~~~s~ 144 (341)
T 3un6_A 86 LVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGS-NIKAVALG-HHEGNVIMGQKGMH 144 (341)
T ss_dssp EEECSSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTC-CCEEEEES-CEECEEEEESTTCC
T ss_pred EEEcCCHHHHHHHHHcCCCCEEecchHHHHHHHHCCC-CeEEEeec-CCCceEEEEcCCCC
Confidence 5678889999999999999998876554333233332 245 4332 24567777777765
No 53
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=91.28 E-value=0.21 Score=39.94 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=29.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLA 35 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~ 35 (138)
++.|++..+++.+|.+|++||++.+.+....+..
T Consensus 65 ~~~y~~~~~a~~aL~nG~vDAiv~~~~~~~~le~ 98 (398)
T 2xxp_A 65 VNQSSSYLAAYKSLIAGETKAIVLNSVFENIIEL 98 (398)
T ss_dssp EEECSSHHHHHHHHHTTSCSCEEEEHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHcCCCCEEEEchHHHHHHHh
Confidence 6789999999999999999999999876665543
No 54
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=91.02 E-value=0.74 Score=34.35 Aligned_cols=58 Identities=14% Similarity=0.044 Sum_probs=39.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCC
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDS 60 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgs 60 (138)
++.+.+..+.+++|.+|++|+.+...........+.. .+. +.......++++++++++
T Consensus 68 ~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~ 126 (346)
T 3qsl_A 68 IADFAGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQ-FYRAFALQGRAPMIGVGVSKKN 126 (346)
T ss_dssp EEECSSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTC-CEEEEEESBSSCCEEEEEETTT
T ss_pred EEecCChHHHHHHHHCCCCCEEccchHHHHHHHhCCC-CeEEEEecccCCCcEEEEecCc
Confidence 4567889999999999999998876444333333332 355 554444456778888865
No 55
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=90.68 E-value=0.45 Score=36.30 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=41.1
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCCh
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSA 61 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgsp 61 (138)
++.+.+..+..++|.+|++|..+...+.+.....+.. .++ +.........++.+.++++
T Consensus 42 i~~~~~~~~~~~al~sG~~D~g~~~~~~~~~a~~~G~-~v~~v~~~~~~~~~~~~~~~~~~ 101 (342)
T 4esw_A 42 ILEPSNPSDVTELVGSGKVDMGLKAMVGTLAAKARGF-PVTSIGSLLDEPFTGICYLEGSG 101 (342)
T ss_dssp EEEESSGGGHHHHHHHTSSSEEEEEHHHHHHHHHTTC-CEEEEEEEECSCCEEEEEETTSS
T ss_pred EEeCCChHHHHHHHHcCCcCEEEecHHHHHHHHHCCC-CeEEEEEeccCCccccccccccc
Confidence 5678889999999999999988876554444444433 366 6655556667777766543
No 56
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=90.33 E-value=0.51 Score=35.44 Aligned_cols=76 Identities=24% Similarity=0.251 Sum_probs=51.6
Q ss_pred CeeecCCHHHHHHHHHcCCceEEEe-cHHHHHHHHHhcCCCee-eCCCCC----------------cceeEEEEeCCChh
Q 039381 1 NIEPIFSENRHRQALTSGEIAAAFL-EVPYVKLFLAKNCKNFT-TGPTYS----------------VGGFGFAFPKDSAY 62 (138)
Q Consensus 1 ~i~~~~~~~e~~~aL~~G~vdA~i~-d~~~l~~~~~~~~~~~~-~~~~~~----------------~~~~g~a~~Kgspl 62 (138)
+++.|++..+..+||.+|++||-.. ..|++..+.++++..+. ++..+. +++--||+|.+
T Consensus 38 eiv~F~Dy~~pN~AL~~G~IDaN~fQH~pyL~~~nk~~g~~lv~v~~~~~~p~giYS~k~ksl~dL~~Ga~IaIPnD--- 114 (245)
T 3up9_A 38 DIVEYTDYVQPNTALNDGDLDANFYQTVPYLENAEKQFGYNFEAGEGIHLEPLGVFSNKHKSLDELPDGGTIGIISD--- 114 (245)
T ss_dssp EEEECSSSHHHHHHHHTTSCSEEEEEEHHHHHHHHHHHCCCEEECCCCEECCCEEECSSCSCGGGCCTTEEEEEECS---
T ss_pred EEEEecCcccHHHHHHcCCCceeccCCHHHHHHHHHHCCCCEEEEeeecccceEEEeCCCCCHHHcCcCCEEEEecC---
Confidence 3688999999999999999999655 78899887776554477 665431 12344555544
Q ss_pred HHHHHHHHHHHhhcCcH
Q 039381 63 LADFSQAILQLSEEGKL 79 (138)
Q Consensus 63 ~~~in~~l~~l~~~G~~ 79 (138)
-..-.++|.=|++.|-+
T Consensus 115 ~tN~~RaL~lL~~aGLI 131 (245)
T 3up9_A 115 TANQSRALELLATQGLV 131 (245)
T ss_dssp HHHHHHHHHHHHHTTSE
T ss_pred cchHHHHHHHHHHCCCE
Confidence 22345566666667754
No 57
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=90.31 E-value=0.42 Score=36.56 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=52.0
Q ss_pred CeeecCCHHHHHHHHHcCCceEEEe-cHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeC---------CCh-----hHH
Q 039381 1 NIEPIFSENRHRQALTSGEIAAAFL-EVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPK---------DSA-----YLA 64 (138)
Q Consensus 1 ~i~~~~~~~e~~~aL~~G~vdA~i~-d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~K---------gsp-----l~~ 64 (138)
+++.|++..+..+||.+|++|+-.. ..|++..+.+.+...+. ++..+ .+++|+...| |.. =-.
T Consensus 54 eiv~F~Dy~~pN~AL~~G~IDaN~fQh~pyL~~~nk~~g~~Lv~v~~~~-~~p~glYS~kiksl~dL~~Ga~IAIPnDpt 132 (275)
T 3gxa_A 54 KLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQVP-TAPLGLYPGKLKSLEEVKDGSTVSAPNDPS 132 (275)
T ss_dssp EEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHHHTCCEEEEEECC-BCCCEEEESSCCCGGGCCTTCEEEEECSHH
T ss_pred EEEEeCCcHhHHHHHHcCCCCeeecCCHHHHHHHHHHcCCCEEEEeecc-ccceEEecCCCCCHHHcCCCCEEEecCCcc
Confidence 3688999999999999999998665 78888877766554477 66543 3444544432 211 123
Q ss_pred HHHHHHHHHhhcCcH
Q 039381 65 DFSQAILQLSEEGKL 79 (138)
Q Consensus 65 ~in~~l~~l~~~G~~ 79 (138)
.-.++|.-|.+.|-+
T Consensus 133 N~~RaL~lL~~aGLI 147 (275)
T 3gxa_A 133 NFARVLVMLDELGWI 147 (275)
T ss_dssp HHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHCCCE
Confidence 455667777777755
No 58
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=90.00 E-value=0.62 Score=36.26 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=48.6
Q ss_pred HHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCC----CCcceeEEEEeC----CCh-hHHH----HHHHHHHHhhc
Q 039381 11 HRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPT----YSVGGFGFAFPK----DSA-YLAD----FSQAILQLSEE 76 (138)
Q Consensus 11 ~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~----~~~~~~g~a~~K----gsp-l~~~----in~~l~~l~~~ 76 (138)
..++|.+|++||++...|......+ . . .. +... .......+++++ .+| +.+. ++++...+.++
T Consensus 210 ~~~aL~~G~vDA~~~~~p~~~~~~~-~-g-~~~l~~~~~~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~ 286 (365)
T 2de3_A 210 QAAVLASGDVDALYSWLPWAGELQA-T-G-ARPVVDLGLDERNAYASVWTVSSGLVRQRPGLVQRLVDAAVDAGLWARDH 286 (365)
T ss_dssp HHHHHHSSSCSEEEEEHHHHHHHHH-T-T-EEESSCGGGSGGGCEEEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCcCEEEEcchhHHHHHh-C-C-CEEEEeCcccCCCCceEEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHC
Confidence 6899999999999998887655443 2 2 44 3221 112234667773 355 4444 56666677776
Q ss_pred -CcHHHHHHHhcCC
Q 039381 77 -GKLRELEEAMLSP 89 (138)
Q Consensus 77 -G~~~~l~~kW~~~ 89 (138)
.+..++..+|++.
T Consensus 287 p~~~~~i~~~~~~~ 300 (365)
T 2de3_A 287 SDAVTSLHAANLGV 300 (365)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC
Confidence 4777888888763
No 59
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=89.72 E-value=0.63 Score=35.46 Aligned_cols=66 Identities=18% Similarity=0.018 Sum_probs=40.5
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHHHHhcC-CCeeeCCCC---CcceeEEEEeCC----Ch-hHHHHHHHHHHH
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLFLAKNC-KNFTTGPTY---SVGGFGFAFPKD----SA-YLADFSQAILQL 73 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~-~~~~~~~~~---~~~~~g~a~~Kg----sp-l~~~in~~l~~l 73 (138)
+.++++++|.+|++||++.+.+.... .+... ..+...... .....+++++++ +| +++.+.+++.+-
T Consensus 154 ~~~~~~~al~~G~vDa~~~~~~~~~~-~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a 228 (348)
T 3uif_A 154 NPQVGAAALASGTVDGFFSLFDSYIL-EDRGVGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLKS 228 (348)
T ss_dssp CHHHHHHHHHHTSSSEEEESTTHHHH-HHTTSEEEEEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCEEEechHHHHH-HhcCCcEEEEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHHH
Confidence 67889999999999999988776533 23221 111122222 123467788876 55 666666666543
No 60
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=89.44 E-value=1.2 Score=33.49 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=51.8
Q ss_pred eeecCCHHHHHHHHHcC----CceEEEecHHHHHHHHHhcCCCee-eCCCCCc-ceeEEEEeCC----Ch-----hHHHH
Q 039381 2 IEPIFSENRHRQALTSG----EIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSV-GGFGFAFPKD----SA-----YLADF 66 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G----~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~-~~~g~a~~Kg----sp-----l~~~i 66 (138)
++.+++.++++++|.+| ++||++.+........+ .. .+. +...+.. ...+++++++ +| +++.+
T Consensus 149 ~v~~~~~~~~~~al~~G~~~~~vDa~~~ep~~~~~~~~-~g-~~~~~~d~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~ 226 (321)
T 2x7q_A 149 FQVLSNFKNLRDSVNLKDGVEGSDAFMWEYFTSKKYYD-NH-EIKQIDQIYTPWSSWVVATSSDSLQAKSDVIKNFIDAV 226 (321)
T ss_dssp EEECCSHHHHHHHHTTCTTSCCCSEEEEEHHHHHHHHH-TT-SEEEEEEEECSSCSEEEEEEHHHHHHSHHHHHHHHHHH
T ss_pred EEEcCChHHHHHHHHcCCCccceEEEEecCccchhhcc-CC-ceEEccccCCCCceEEEEEcHHHHhhCHHHHHHHHHHH
Confidence 45667889999999999 99998876444333332 22 244 4332222 2357788764 44 56667
Q ss_pred HHHHHHHhhcC-cHHHHHHHhcC
Q 039381 67 SQAILQLSEEG-KLRELEEAMLS 88 (138)
Q Consensus 67 n~~l~~l~~~G-~~~~l~~kW~~ 88 (138)
++++..+.++. +..++..++++
T Consensus 227 ~~a~~~~~~~p~~a~~~~~~~~~ 249 (321)
T 2x7q_A 227 NQGIQYYNEHVDEAIEYISSNLD 249 (321)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHCHHHHHHHHHHHhC
Confidence 77777777653 33445555544
No 61
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=89.36 E-value=0.94 Score=34.45 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=34.6
Q ss_pred ecCC-HHHHHHHHHcCCceEEEec-HHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCCh
Q 039381 4 PIFS-ENRHRQALTSGEIAAAFLE-VPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSA 61 (138)
Q Consensus 4 ~~~~-~~e~~~aL~~G~vdA~i~d-~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgsp 61 (138)
.+.+ .++.+++|.+|++|+.+.. .+.+.. ..+.. .+. +.......+.+++++++++
T Consensus 52 ~~~g~~~~~~~al~~G~~D~~~~~~~~~~~~-~~~g~-~~~~v~~~~~~~~~~lvv~~~s~ 110 (348)
T 3uif_A 52 AMASVGPVINEGFASGKIDFGIYGDLPPIIL-NASKP-TVQLVAPWGTTSNSYLVVPKNST 110 (348)
T ss_dssp CTTCHHHHHHHHHHTTCCCEEEEESHHHHHH-HHHSC-CEEEEEECCCCCCCEEEEETTCC
T ss_pred ccCCCcHHHHHHHHcCCCCEEecCcHHHHHH-HhCCC-CEEEEEeccCCCceEEEEECCCC
Confidence 4554 5678899999999998854 444333 23322 355 5444555566777777654
No 62
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=88.44 E-value=1.3 Score=32.70 Aligned_cols=59 Identities=12% Similarity=-0.050 Sum_probs=34.0
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCC-CCCcceeEEEEeCCCh
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGP-TYSVGGFGFAFPKDSA 61 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~-~~~~~~~g~a~~Kgsp 61 (138)
++.+++..+.+++|.+|++|+.+...........+ ...+. +.. .....+++++++++++
T Consensus 36 ~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~lv~~~~~~ 96 (308)
T 2x26_A 36 WVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAA-GADLVYVGVEPPKPKAEVILVAENSP 96 (308)
T ss_dssp EEECSSHHHHHHHHHHTSCSEEEECSHHHHHHHHT-TCCEEEEEEECCCGGGEEEEEETTCS
T ss_pred EEECCCcHHHHHHHHCCCCCEEcccCcHHHHHHhc-CCCeEEEEEecCCCCceEEEEeCCCC
Confidence 45677778999999999999887653322221122 22244 322 2233455666666554
No 63
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=88.10 E-value=0.55 Score=35.08 Aligned_cols=76 Identities=21% Similarity=0.380 Sum_probs=50.8
Q ss_pred CeeecCCHHHHHHHHHcCCceEEEe-cHHHHHHHHHhcCCCee-eCCCCC----------------cceeEEEEeCCChh
Q 039381 1 NIEPIFSENRHRQALTSGEIAAAFL-EVPYVKLFLAKNCKNFT-TGPTYS----------------VGGFGFAFPKDSAY 62 (138)
Q Consensus 1 ~i~~~~~~~e~~~aL~~G~vdA~i~-d~~~l~~~~~~~~~~~~-~~~~~~----------------~~~~g~a~~Kgspl 62 (138)
+++.|++..+...||.+|++|+-.. ..|++..+.+.++..+. ++..+. +++--||+|.+
T Consensus 37 eiv~F~Dy~~pN~AL~~G~IDaN~fQh~pyL~~~nk~~g~~lv~v~~~~~~p~glYS~k~ksl~dL~~Ga~IaipnD--- 113 (237)
T 3k2d_A 37 ELVTFTDYVTPNAALDDGSIDMNAFQHKPYLDRQVEDRDYKLTIAGNTFVYPIAGYSKQVKSVAALADGVRIAVPND--- 113 (237)
T ss_dssp EEEEESCTTSHHHHHHHTSCSEEEEEEHHHHHHHHHHHCCCEEEEEECCCCCCEEECSSCSCSTTCCTTCEEEEECS---
T ss_pred EEEEeCChHhHHHHHHcCCCCeeccCCHHHHHHHHHHCCCCEEEEeeecccceEEecCCCCCHHHhcCCCEEEecCC---
Confidence 3688999999999999999998665 68888777666544476 665321 12344555544
Q ss_pred HHHHHHHHHHHhhcCcH
Q 039381 63 LADFSQAILQLSEEGKL 79 (138)
Q Consensus 63 ~~~in~~l~~l~~~G~~ 79 (138)
-..-.++|.-|.+.|-+
T Consensus 114 ~tN~~RaL~lL~~aGLI 130 (237)
T 3k2d_A 114 PTNLGRSLLLLEQQGLI 130 (237)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred ccHHHHHHHHHHHCCCE
Confidence 22345566666777754
No 64
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=86.90 E-value=1 Score=33.86 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=51.5
Q ss_pred CeeecCCHHHHHHHHHcCCceEEEe-cHHHHHHHHHhcCCCee-eCCCCCcceeE-----------------EEEeCCCh
Q 039381 1 NIEPIFSENRHRQALTSGEIAAAFL-EVPYVKLFLAKNCKNFT-TGPTYSVGGFG-----------------FAFPKDSA 61 (138)
Q Consensus 1 ~i~~~~~~~e~~~aL~~G~vdA~i~-d~~~l~~~~~~~~~~~~-~~~~~~~~~~g-----------------~a~~Kgsp 61 (138)
+++.|++..+...||.+|++||-.. ..|++..+.+++...+. ++..+ .+++| ||+|.+
T Consensus 32 eiv~F~Dy~~pN~AL~~G~iDaN~fQh~pyL~~~nk~~g~~Lv~v~~~~-~~p~glYS~k~ksl~dl~~Ga~IaIPnD-- 108 (245)
T 3ir1_A 32 KLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQVP-TAPLGLYPGKLKSLEEVKDGSTVSAPND-- 108 (245)
T ss_dssp EEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHHHTCCEEEEEECC-BCCCEEEESSCCCGGGCCTTCEEEEECS--
T ss_pred EEEEeCCcHhHHHHHHCCCcCeeccCCHHHHHHHHHHcCCCEEEEeeec-ccceEEecCCCCCHHHcCCCCEEEecCC--
Confidence 3688999999999999999999655 78889887776654477 66543 23344 444443
Q ss_pred hHHHHHHHHHHHhhcCcH
Q 039381 62 YLADFSQAILQLSEEGKL 79 (138)
Q Consensus 62 l~~~in~~l~~l~~~G~~ 79 (138)
-..-.++|.-|.+.|-+
T Consensus 109 -ptN~~RaL~lL~~aGLI 125 (245)
T 3ir1_A 109 -PSNFARVLVMLDELGWI 125 (245)
T ss_dssp -HHHHHHHHHHHHHTTSS
T ss_pred -ccHHHHHHHHHHHCCCE
Confidence 23445666667777754
No 65
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=85.83 E-value=1.5 Score=32.46 Aligned_cols=84 Identities=12% Similarity=0.121 Sum_probs=54.7
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChh--HH--HHHHHHHHHh----
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAY--LA--DFSQAILQLS---- 74 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl--~~--~in~~l~~l~---- 74 (138)
.+.+..+.++.+++|.+|.++...+.......+.. +. ...++....+-++.|+++|+ .. .+..++.++.
T Consensus 39 ~~~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g--~~~~~~~~~~n~lVlV~P~~~P~~i~~~~dl~~~l~~IA~a~~ 116 (236)
T 3lr1_A 39 IAVGTGQALKLGEAGDVDVVFVHARKLEDKFVADG--FGVNRKDVMYNDFVIVGPKNDPAGIAKAKTAAEALKLLATKGA 116 (236)
T ss_dssp EEECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTT--SEEEEEEEEECCEEEEECTTCTTCGGGCSSHHHHHHHHHHHTC
T ss_pred EEcChHHHHHHHhcCCCCEEeecCchhHHHHHhcC--CCcceEEEEcCcEEEEEECCChhhccchhhHHHHHHHHhhCCC
Confidence 45677889999999999999987665433322222 22 22346667789999999985 32 2445555441
Q ss_pred -------hcCcHHHHHHHhcCC
Q 039381 75 -------EEGKLRELEEAMLSP 89 (138)
Q Consensus 75 -------~~G~~~~l~~kW~~~ 89 (138)
.+|+.....+-|-..
T Consensus 117 ~fisRed~SGT~~~~~~l~~~a 138 (236)
T 3lr1_A 117 TFISRGDKSGTHTKELDLWKSA 138 (236)
T ss_dssp CEEECCSSSHHHHHHHHHHHHT
T ss_pred cEEEccCCcchHHHHHHHHHHc
Confidence 367777777666543
No 66
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=85.75 E-value=0.97 Score=34.03 Aligned_cols=76 Identities=22% Similarity=0.398 Sum_probs=50.0
Q ss_pred CeeecCCHHHHHHHHHcCCceEEEe-cHHHHHHHHHhcCCCee-eCCCCC----------------cceeEEEEeCCChh
Q 039381 1 NIEPIFSENRHRQALTSGEIAAAFL-EVPYVKLFLAKNCKNFT-TGPTYS----------------VGGFGFAFPKDSAY 62 (138)
Q Consensus 1 ~i~~~~~~~e~~~aL~~G~vdA~i~-d~~~l~~~~~~~~~~~~-~~~~~~----------------~~~~g~a~~Kgspl 62 (138)
+++.|++..+...||.+|++|+-.. ..|++..+.+.+...+. ++.... +++--||+|.+ |
T Consensus 41 eiv~F~Dy~~pN~AL~~G~iDaN~fQh~pyL~~~~k~~g~~lv~v~~~~~~p~glyS~kiksl~dLk~Ga~IAipnd-~- 118 (252)
T 4ib2_A 41 EVTVFDDYVQPNEVVESGEFDANYFQHVPYLESFNEEKGTHLVDAGDIHYEPFGIYPGTKKSLDEISEGDKIAVPND-T- 118 (252)
T ss_dssp EEEECSSSSHHHHHHHTTSSSEEEEEEHHHHHHHHHHHCCCEEEEEEEEECCCEEEESSCSCGGGCCTTCEEEEECS-H-
T ss_pred EEEEecChhhHHHHHHcCCcCeeecCCHHHHHHHHHHCCCCEEEEeeccccceEeecCCcCCHHHcCCCCEEEeeCC-C-
Confidence 3688999999999999999998665 67888777665543466 654220 12344666544 2
Q ss_pred HHHHHHHHHHHhhcCcH
Q 039381 63 LADFSQAILQLSEEGKL 79 (138)
Q Consensus 63 ~~~in~~l~~l~~~G~~ 79 (138)
..-.++|.-|.+.|-+
T Consensus 119 -sN~~RaL~lL~~aGLI 134 (252)
T 4ib2_A 119 -TNEARALLLLQDNGII 134 (252)
T ss_dssp -HHHHHHHHHHHHTTSC
T ss_pred -CHHHHHHHHHHHCCCE
Confidence 3445566666677744
No 67
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=85.67 E-value=1.7 Score=32.18 Aligned_cols=83 Identities=7% Similarity=0.068 Sum_probs=53.3
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChhH--H--HHHHHHHHHh----
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAYL--A--DFSQAILQLS---- 74 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl~--~--~in~~l~~l~---- 74 (138)
.+.+..+.++.+.+|.+|.++...+.....+.... +. ...+|....+-++.|+++|+. . .+..++.++.
T Consensus 39 ~~~gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g--~~~~~~~~a~N~lVlV~P~~~P~~i~~~~dl~~~l~~Ia~~~~ 116 (237)
T 3muq_A 39 IAAGTGKALKMGENGDVDLVMTHAPKAEGTFVEKG--YGVLPRKLMYNDFVIVGPKADPAKIKDDESVLDVFKEIANKNA 116 (237)
T ss_dssp EEECHHHHHHHHHTTSSSEEEECCHHHHHHHHHTT--SEEEEEEEEEEEEEEEECTTCTTCCTTCSSHHHHHHHHHHTTC
T ss_pred EEcChHHHHHHHhcCCCCEEEecCchhHHHHHhcC--CccccEEEEeCCEEEEEeCCChhhccchhhHHHHHHHHhhcCC
Confidence 45677889999999999999987665433222221 22 223455667889999999852 2 3555565553
Q ss_pred -------hcCcHHHHHHHhcC
Q 039381 75 -------EEGKLRELEEAMLS 88 (138)
Q Consensus 75 -------~~G~~~~l~~kW~~ 88 (138)
.+|+-....+-|-.
T Consensus 117 ~fisRedgSGTr~~~~~~~~~ 137 (237)
T 3muq_A 117 TFISRGDDSGTHKKEMGFWAQ 137 (237)
T ss_dssp CEEECCSCCHHHHHHHHHHHH
T ss_pred cEEEccCCCcHHHHHHHHHHH
Confidence 36777766666643
No 68
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=84.84 E-value=2.6 Score=32.16 Aligned_cols=70 Identities=10% Similarity=0.029 Sum_probs=44.9
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHH----HHHHHHHhc-------------------CCCee---eCC-CC---C----
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVP----YVKLFLAKN-------------------CKNFT---TGP-TY---S---- 48 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~----~l~~~~~~~-------------------~~~~~---~~~-~~---~---- 48 (138)
+.|.+..+++++|.+|++|+++...+ .+..+++.. +. +. +.. .+ .
T Consensus 179 v~~~g~~~a~~aL~~G~vDa~~~~~~~p~~~~~~~~~~g~lr~L~v~~~~r~~~~p~~Pt-~~~~~ip~g~~~~~~dv~t 257 (327)
T 4ddd_A 179 MAELKSSEQAQALCDNKIDVMVDVIGHPNASIQEASATCDIKFIPLDDRLIDDLHAKYPY-YQKDIISGGLYNDSPDIQT 257 (327)
T ss_dssp EECCCHHHHHHHHHTTSCSBEEEEECSSCHHHHHHHHHSCEEECCCCHHHHHHHHHHCTT-CEEEEECSCSSSSCCCEEE
T ss_pred hhcCCHHHHHHHHHcCCCCEEEEccCCCcHHHHHHHhcCCeEEEeCCHHHHHHHHHhCCC-ceEEEeCCCCCCCCCCcce
Confidence 57899999999999999999987532 222222211 11 11 110 12 1
Q ss_pred -cceeEEEEeCCCh--hHHHHHHHHHHH
Q 039381 49 -VGGFGFAFPKDSA--YLADFSQAILQL 73 (138)
Q Consensus 49 -~~~~g~a~~Kgsp--l~~~in~~l~~l 73 (138)
...++++.|++-| .+..++++|.+-
T Consensus 258 ~~~~~~l~ap~~~p~~vv~~l~~a~~e~ 285 (327)
T 4ddd_A 258 VSVKASLVTTTELSNDLAYKIVKSIATH 285 (327)
T ss_dssp EEEEEEEEEETTSCHHHHHHHHHHHHHT
T ss_pred eeeeeEEEEcCCCCHHHHHHHHHHHHhC
Confidence 1247889999954 899999988853
No 69
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=84.56 E-value=0.86 Score=34.10 Aligned_cols=76 Identities=25% Similarity=0.396 Sum_probs=50.3
Q ss_pred CeeecCCHHHHHHHHHcCCceEEEe-cHHHHHHHHHhcCCCee-eCCCCC----------------cceeEEEEeCCChh
Q 039381 1 NIEPIFSENRHRQALTSGEIAAAFL-EVPYVKLFLAKNCKNFT-TGPTYS----------------VGGFGFAFPKDSAY 62 (138)
Q Consensus 1 ~i~~~~~~~e~~~aL~~G~vdA~i~-d~~~l~~~~~~~~~~~~-~~~~~~----------------~~~~g~a~~Kgspl 62 (138)
+++.|++..+...||.+|++|+-.. ..|++..+.+.++..+. ++.... +++--||+|.+.
T Consensus 34 eiv~F~Dy~~pN~AL~~G~iDaN~fQh~pyl~~~~k~~g~~lv~v~~~~~~p~glYS~k~ksl~dL~~Ga~Iaipnd~-- 111 (240)
T 3tqw_A 34 NIITFSDYNTPNEALADGSVDANMFQHLPYLKAQIEMRGYKIVSIGKTFVYPMGLYSKKITALTQLKTGAKIAVPSDP-- 111 (240)
T ss_dssp EEEEESCTTSHHHHHHTTSCSEEEEEEHHHHHHHHHHHCCCEEEEEEEEECCCEEECSSCSSGGGCCTTCEEEEECSH--
T ss_pred EEEEeCChHhHHHHHHcCCcCeeccCCHHHHHHHHHHCCCCEEEEeeccccceEEecCCCCCHHHhcCCCEEEEecCc--
Confidence 3678999999999999999999765 78888877766543466 554221 134556666652
Q ss_pred HHHHHHHHHHHhhcCcH
Q 039381 63 LADFSQAILQLSEEGKL 79 (138)
Q Consensus 63 ~~~in~~l~~l~~~G~~ 79 (138)
..-.++|.-|.+.|-+
T Consensus 112 -tn~~RaL~lL~~aGLI 127 (240)
T 3tqw_A 112 -SNEARALLLLEKAQLI 127 (240)
T ss_dssp -HHHHHHHHHHHHTTSC
T ss_pred -cHHHHHHHHHHHCCCE
Confidence 2234455556666654
No 70
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=84.19 E-value=0.99 Score=33.86 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=50.0
Q ss_pred CeeecCCHHHHHHHHHcCCceEEEe-cHHHHHHHHHhcCCCee-eCCCCC----------------cceeEEEEeCCChh
Q 039381 1 NIEPIFSENRHRQALTSGEIAAAFL-EVPYVKLFLAKNCKNFT-TGPTYS----------------VGGFGFAFPKDSAY 62 (138)
Q Consensus 1 ~i~~~~~~~e~~~aL~~G~vdA~i~-d~~~l~~~~~~~~~~~~-~~~~~~----------------~~~~g~a~~Kgspl 62 (138)
+++.|++..+...||.+|++|+-.. ..|++..+.+.+...+. ++..+. +++--||+|.+..
T Consensus 34 eiv~F~dy~~pN~AL~~G~iD~n~fQh~pyl~~~~k~~g~~Lv~v~~~~~~p~glYS~kiksl~dL~~Ga~IAIpnd~s- 112 (246)
T 4ef1_A 34 EVTTYTDYVLPNKALESGDIDANYFQHVPFFNEAVKENDYDFVNAGAIHLEPVGLYSKKYKSLQEIPDGSTIYVSSSVS- 112 (246)
T ss_dssp EEEECSSSSHHHHHHHHTSCSEEEEEEHHHHHHHHHHHTCCEEEEEEEEECCCEEECSSCSSGGGSCTTCEEEEESCGG-
T ss_pred EEEEeCCchhHHHHHHCCCCCEEecCCHHHHHHHHHHCCCCEEEEeeccccceEEecCCCCCHHHcCCCCEEEeecCCc-
Confidence 3678999999999999999998665 78888777665543466 554220 1355677776632
Q ss_pred HHHHHHHHHHHhhcCcH
Q 039381 63 LADFSQAILQLSEEGKL 79 (138)
Q Consensus 63 ~~~in~~l~~l~~~G~~ 79 (138)
.-.++|.-|.+.|.+
T Consensus 113 --n~~RaL~lL~~~GLI 127 (246)
T 4ef1_A 113 --DWPRVLTILEDAGLI 127 (246)
T ss_dssp --GHHHHHHHHHHTTSE
T ss_pred --hHHHHHHHHHHCCCe
Confidence 112356656666654
No 71
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B 1suv_E
Probab=84.03 E-value=2.2 Score=33.46 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=36.2
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee--eCCCCC----------cceeEEEE-eCCCh
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT--TGPTYS----------VGGFGFAF-PKDSA 61 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~--~~~~~~----------~~~~g~a~-~Kgsp 61 (138)
+.-.+..+++++++.|++|++..|.-.+ |... .++ +. +.+.+. ..+|++|+ +|+++
T Consensus 32 v~a~s~~~Ci~~I~~g~AD~~~ld~~~v-y~Ag-~~~-L~Pv~~E~y~~~~~~~~~~~~~YyaVAVVkK~s~ 100 (342)
T 3skp_A 32 VSAETTEDCIAKIMNGEADAMSLDGGFV-YIAG-KCG-LVPVLAENYNKSDNCEDTPEAGYFAVAVVKKSAS 100 (342)
T ss_dssp EECSSHHHHHHHHHHTSCCBEEECHHHH-HHHH-HTT-CEEEEEEECSCCTTGGGSCCCCEEEEEEEETTCS
T ss_pred EeCCCHHHHHHHHHcCCCCEEEECchhe-EEec-cCC-cEEEEEEEeecCccccCCCcceEEEEEEEEcCCC
Confidence 3456889999999999999999985543 3333 343 44 333221 23788876 56443
No 72
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=83.47 E-value=10 Score=27.12 Aligned_cols=78 Identities=9% Similarity=-0.003 Sum_probs=49.6
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-e---CCC-CCcceeEEEEeCCChhHHHHHHHHHHHhhc
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-T---GPT-YSVGGFGFAFPKDSAYLADFSQAILQLSEE 76 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~---~~~-~~~~~~g~a~~Kgspl~~~in~~l~~l~~~ 76 (138)
++..++..+.++.+.+|++|+.+.-...+. . .. .+. + ++. .....|++++.|+++- +.- +.+.+...+
T Consensus 150 ~~~~~~~~~~~~~v~~Ge~d~gi~~~s~a~---~-~~-~~~~v~~~P~~~~~~~~~~~ai~k~~~~-~~A-~~Fi~fl~S 222 (237)
T 3r26_A 150 LAPAEDVRGALALVERNEAPLGIVYGSDAV---A-SK-GVKVVATFPEDSHKKVEYPVAVVEGHNN-ATV-KAFYDYLKG 222 (237)
T ss_dssp EEEESSHHHHHHHHHTTSSSEEEEEHHHHH---H-CS-SEEEEEECCGGGSCCEEEEEEEBTTCCS-HHH-HHHHHHHTS
T ss_pred EEecCCHHHHHHHHHcCCCCEEEEEecccc---c-CC-CCeEEEECCcccCCeeeeeEEEEcCCCC-HHH-HHHHHHHcC
Confidence 345577889999999999999887544322 1 22 243 3 332 2455789999998764 333 444455555
Q ss_pred CcHHHHHHHh
Q 039381 77 GKLRELEEAM 86 (138)
Q Consensus 77 G~~~~l~~kW 86 (138)
-+-+++..+|
T Consensus 223 ~eaq~i~~~~ 232 (237)
T 3r26_A 223 PQAAEIFKRY 232 (237)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 5667777776
No 73
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=82.50 E-value=2.4 Score=33.05 Aligned_cols=26 Identities=15% Similarity=-0.028 Sum_probs=22.5
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVP 28 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~ 28 (138)
+.-.+..++++++++|++|++..|..
T Consensus 37 v~~~s~~~Ci~aI~~g~aD~~~ld~~ 62 (332)
T 1iej_A 37 VQKATYLDCIKAIANNEADAITLDGG 62 (332)
T ss_dssp EECSSHHHHHHHHHTTSCCBEEECHH
T ss_pred EEcCCHHHHHHHHHcCCCcEEEeCcc
Confidence 45578899999999999999999843
No 74
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=81.44 E-value=2.3 Score=31.38 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=31.7
Q ss_pred CeeecCCHHHHHHHHHcCCceEEE-ecHHHHHHHHHhcCCCee
Q 039381 1 NIEPIFSENRHRQALTSGEIAAAF-LEVPYVKLFLAKNCKNFT 42 (138)
Q Consensus 1 ~i~~~~~~~e~~~aL~~G~vdA~i-~d~~~l~~~~~~~~~~~~ 42 (138)
+++.|.+..+..+||.+|++|+-. -..+++..+.+.++..+.
T Consensus 33 e~~~f~d~~~~n~AL~~G~iD~n~fq~~~~l~~~~~~~g~~l~ 75 (241)
T 1xs5_A 33 RIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQEHNGDLV 75 (241)
T ss_dssp EEEECSCHHHHHHHHHHTSSSEEEEEEHHHHHHHHHHHTCCEE
T ss_pred EEEEcCChHHHHHHHHcCCCCEeccCCHHHHHHHHHHCCCCEE
Confidence 367899999999999999999965 467777766544333355
No 75
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=80.81 E-value=5.8 Score=29.16 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=21.0
Q ss_pred ecCCHHHHHHHHHcCCceEEEecH
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEV 27 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~ 27 (138)
.|.+..+++++|.+|++|+++...
T Consensus 165 ~~~~~~~~~~al~~G~vda~~~~~ 188 (314)
T 1us5_A 165 IRVSASQGIQLMQDKRADALFYTV 188 (314)
T ss_dssp ECCCHHHHHHHHHTTSCSEEEEEE
T ss_pred ecCCHHHHHHHHHcCCccEEEEcc
Confidence 577889999999999999999753
No 76
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=80.79 E-value=2.8 Score=32.68 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=36.2
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHh--cCCCee--eCCCCC------cceeEEEE-eCCCh
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAK--NCKNFT--TGPTYS------VGGFGFAF-PKDSA 61 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~--~~~~~~--~~~~~~------~~~~g~a~-~Kgsp 61 (138)
+.-.+..++++++++|++|+++.|... ++++. .++ +. +.+... ...|++|+ +|+++
T Consensus 38 v~~~~~~~ci~aI~~g~AD~~~ld~~~--~~~A~~~~~~-l~pi~~e~~~~~~~~~~~Y~avaVVkk~s~ 104 (334)
T 1h45_A 38 IKRDSPIQCIQAIAENRADAVTLDGGF--IYEAGLAPYK-LRPVAAEVYGTERQPRTHYYAVAVVKKGGS 104 (334)
T ss_dssp EECSSHHHHHHHHHTTSCCBEEECHHH--HHHHHSTTTC-EEEEEEEEEECSSSEESEEEEEEEEETTCC
T ss_pred EEcCCHHHHHHHHHcCCCCEEEeCccc--eEEeecCccC-CEEEEEEeecCCCCCCCceEEEEEEeCCCC
Confidence 456788999999999999999998442 33333 344 54 333222 24567754 66664
No 77
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Probab=80.32 E-value=2.4 Score=36.44 Aligned_cols=57 Identities=19% Similarity=0.116 Sum_probs=37.3
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHHHHHHH-hcCCCee--eCCCC------CcceeEEEE-eCCChh
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYVKLFLA-KNCKNFT--TGPTY------SVGGFGFAF-PKDSAY 62 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~-~~~~~~~--~~~~~------~~~~~g~a~-~Kgspl 62 (138)
.-.+..++++++++|++|++..|.-.+ |... ..++ +. +.+.. ...+|++|+ +|++++
T Consensus 60 ~~~s~~~Ci~~I~~g~AD~~~ld~~~v-y~A~~~~~~-L~Pv~~E~y~~~~~~~~~YyaVAVVkk~s~~ 126 (698)
T 3v83_A 60 KKASYLDCIRAIAANEADAVTLDAGLV-YDAYLAPNN-LKPVVAEFYGSKEDPQTFYYAVAVVKKDSGF 126 (698)
T ss_dssp EESSHHHHHHHHHTTSCCBEEECHHHH-HHHHSTTTC-EEEEEEEEEECSSSEESEEEEEEEEESSCCC
T ss_pred ecCCHHHHHHHHHcCCCCEEEEChHHH-HhhccCcCC-cEEEEEEeeccCCCCCcceEEEEEEeCCCCC
Confidence 346889999999999999999995532 3333 2344 54 33322 244788876 677653
No 78
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Probab=80.15 E-value=4.2 Score=34.93 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=36.5
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee--eCCCCC----------cceeEEEE-eCC
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT--TGPTYS----------VGGFGFAF-PKD 59 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~--~~~~~~----------~~~~g~a~-~Kg 59 (138)
+.-.+..+++++++.|++|++..|.-.+ |...+ ++ +. +.+.+. ..+|++|+ +|+
T Consensus 388 v~a~s~~~Ci~~I~~g~AD~~~ld~~~v-y~Ag~-~~-L~Pv~~E~y~~~~~~~~~~~~~YyaVAVVkks 454 (698)
T 3v83_A 388 VSAETTEDCIAKIMNGEADAMSLDGGFV-YIAGK-CG-LVPVLAENYNKSDNCEDTPEAGYFAVAVVKKS 454 (698)
T ss_dssp EEESSHHHHHHHHHHTSCCEEEECHHHH-HHHHH-TT-CEEEEEEECSCCTTGGGCCCCCEEEEEEEETT
T ss_pred EeCCCHHHHHHHHHcCCCCEEEECcHHH-hhhhh-cC-ceEEEEEeeccccccccCCCCceEEEEEEecC
Confidence 3456889999999999999999985543 43334 54 44 443332 24789886 663
No 79
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=79.92 E-value=2.7 Score=33.54 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=47.5
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee--eCCCCC-cceeEEEEeCC----Ch-----hHHHHHHHHHHHh
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT--TGPTYS-VGGFGFAFPKD----SA-----YLADFSQAILQLS 74 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~--~~~~~~-~~~~g~a~~Kg----sp-----l~~~in~~l~~l~ 74 (138)
..++++++|++|++||++...|......++...... .+..+. .....++++++ +| +++.+.++...+.
T Consensus 200 ~~~~~~~aL~~G~iDa~~~~eP~~~~a~~~g~g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~ 279 (429)
T 2i49_A 200 PPAETVQGMRNGTMDAFSTGDPWPYRIVTENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWID 279 (429)
T ss_dssp CHHHHHHHHHHTCCCEEEEETTHHHHHHHTTSCEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHcCCccEEEeccchHHHHHHCCCCEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHh
Confidence 568899999999999999888877665554422122 222222 23356777764 45 4445555555565
Q ss_pred h---cCcHHHHHHH
Q 039381 75 E---EGKLRELEEA 85 (138)
Q Consensus 75 ~---~G~~~~l~~k 85 (138)
+ ..+..++..+
T Consensus 280 ~~~n~~e~a~i~a~ 293 (429)
T 2i49_A 280 DPKNRPEVVQIVSG 293 (429)
T ss_dssp SGGGHHHHHHHHHS
T ss_pred CccCHHHHHHHhcc
Confidence 4 2345555554
No 80
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=79.77 E-value=4.7 Score=30.14 Aligned_cols=61 Identities=13% Similarity=0.005 Sum_probs=35.9
Q ss_pred eeecCCHH-HHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcc-eeEEEEeCCC-hh
Q 039381 2 IEPIFSEN-RHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVG-GFGFAFPKDS-AY 62 (138)
Q Consensus 2 i~~~~~~~-e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~-~~g~a~~Kgs-pl 62 (138)
++.+++.. ..+++|.+|++|+.+...+.......+....+. ++...... .+++++++++ +.
T Consensus 48 ~~~~~~g~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~i~v~~ds~~i 112 (321)
T 2x7q_A 48 FVKVPEGSGRLINLLNSNEVDIAIGLTEAFIADIAKGNENIHVLDTYVKSPLLWAVSTGSNRDDV 112 (321)
T ss_dssp EEECTTCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEEEEEEEECSCCEEEEEEESSCTTC
T ss_pred EEECCCCHHHHHHHHHcCCccEEecCcHHHHHHHHCCCCcEEEEEEecCCCcceEEEECCCCCCC
Confidence 34555644 478999999999988765433222233221266 54333222 2578888876 53
No 81
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=78.79 E-value=2.4 Score=31.74 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=37.7
Q ss_pred eecCCHHHHHHHHHcCCceEEEe---cHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCC
Q 039381 3 EPIFSENRHRQALTSGEIAAAFL---EVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDS 60 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~---d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgs 60 (138)
+.+++ ..++++|.+|++|+++. ..+...++.+ ..+.+. ++.......+|+++|+..
T Consensus 198 ~~~~~-~~~~~al~~G~iD~~~e~w~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~l~Vp~~~ 257 (268)
T 2b4l_A 198 TQVEA-GPMWTAIATGSADASLSAWLPNTHKAYAAK-YKGKYDDIGTSMTGVKMGLVVPQYM 257 (268)
T ss_dssp EECCT-THHHHHHHHTSSSEEEEEEETTTTHHHHHH-TTTSEEEEEEEEEEEEEEEEEETTC
T ss_pred EECCh-HHHHHHHHCCCCeEEehhhcCcCcHHHHHH-HcCCeEEccCCCCCCeEEEEEehhh
Confidence 44544 77899999999999843 2122233333 333578 887666678999999864
No 82
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=78.73 E-value=1.6 Score=32.40 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=36.5
Q ss_pred CHHHHHHHHHcCCceEEEec-HHH--HHHHHHhcCCCee-eCCCCCcceeEEEEeCCC
Q 039381 7 SENRHRQALTSGEIAAAFLE-VPY--VKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDS 60 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d-~~~--l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgs 60 (138)
+.+.++++|.+|++|++..- .|. ..++.+... .+. ++..+....||+++|+..
T Consensus 38 ~~~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~l~Vp~~~ 94 (256)
T 3l6g_A 38 DNAVAWQTVANGQADGMVSAWLPNTHKTQWQKYGK-SVDLLGPNLKGAKVGFVVPSYM 94 (256)
T ss_dssp CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGG-GEEEEEEEEEEEEEEEEEETTS
T ss_pred ChHHHHHHHHCCCCeEEEcccCCcccHHHHHHhCC-ceEEccccCCCceEEEEECCcc
Confidence 56778999999999998753 232 233333223 477 776665567999999975
No 83
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=76.89 E-value=10 Score=27.87 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCC-ee-eCCCCCcceeEEEEeCCC
Q 039381 6 FSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKN-FT-TGPTYSVGGFGFAFPKDS 60 (138)
Q Consensus 6 ~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~-~~-~~~~~~~~~~g~a~~Kgs 60 (138)
.+.+.-+.+|++|++|.+|........++++.... .. ++.+.......+.+++++
T Consensus 52 rg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~yYv~~h~li~~~~~ 108 (231)
T 2ozz_A 52 RGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTYVGEHQLICRKGE 108 (231)
T ss_dssp SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTSSSCCEEEEEETTC
T ss_pred cChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCccccCeEEEEeCCC
Confidence 36677899999999999999977776666653211 12 455444233334554443
No 84
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=76.78 E-value=20 Score=26.33 Aligned_cols=82 Identities=12% Similarity=-0.037 Sum_probs=52.4
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-e-CC-CCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHH
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-T-GP-TYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLR 80 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~-~~-~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~ 80 (138)
.+.+.++..+++.+|++++++.....+..+.+...+ +. + +. .-.....+++++++++-.+..-+.|.-|... +.+
T Consensus 215 ~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~-~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~-e~q 292 (351)
T 4edp_A 215 TYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPE-VINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSK-EVQ 292 (351)
T ss_dssp EECCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTT-CEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSH-HHH
T ss_pred ccCChHHHHHHHHcCCEEEEecCcHHHHHHHhcCCC-eeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCH-HHH
Confidence 356778899999999999999876655555554433 44 2 22 1223457899999988766666666555543 344
Q ss_pred HHHHHhc
Q 039381 81 ELEEAML 87 (138)
Q Consensus 81 ~l~~kW~ 87 (138)
+...+..
T Consensus 293 ~~~~~~~ 299 (351)
T 4edp_A 293 EKTAKAL 299 (351)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 4444433
No 85
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=75.70 E-value=4.8 Score=31.19 Aligned_cols=57 Identities=19% Similarity=0.075 Sum_probs=36.1
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHH-hcCCCee--eCCCC------CcceeEEEE-eCCCh
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLA-KNCKNFT--TGPTY------SVGGFGFAF-PKDSA 61 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~-~~~~~~~--~~~~~------~~~~~g~a~-~Kgsp 61 (138)
+.-.+..++++++++|++|++..+.... |... +.++ +. +.+.. ....|++|+ +|+++
T Consensus 40 v~~~dy~~ci~ai~~g~aD~~~l~~~~~-~~A~~~~~~-l~pi~ae~~~~~~~~~~~Y~sVaVVkkdS~ 106 (327)
T 1ryo_A 40 VKKASYLDCIRAIAANEADAVTLDAGLV-YDAYLAPNN-LKPVVAEFYGSKEDPQTFYYAVAVVKKDSG 106 (327)
T ss_dssp EEESSHHHHHHHHHTTSCCBEEECHHHH-HHHHSTTTC-CEEEEEEEEECSSSEESEEEEEEEEETTCC
T ss_pred EecCCHHHHHHHHHcCCCcEEEeCccce-eEEecccCC-CEEEEEEEecCCCCCCCceEEEEEEeCCCC
Confidence 4567899999999999999999985443 4333 3344 43 32222 233566644 66665
No 86
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1- butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB; 1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A* 3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 4fim_A* 4fjp_A* 4for_A* 4g2z_A* 4grk_A* 2b6d_A* 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* ...
Probab=75.51 E-value=4.7 Score=31.52 Aligned_cols=25 Identities=16% Similarity=0.043 Sum_probs=22.0
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHH
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVP 28 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~ 28 (138)
.-.+..+++++++.|++|++..|.-
T Consensus 32 ~~~s~~dCi~~I~~g~AD~~~ld~g 56 (335)
T 3tod_A 32 TASTTDDCIVLVLKGEADALNLDGG 56 (335)
T ss_dssp EESSHHHHHHHHHHTSCCEEEECHH
T ss_pred ecCCHHHHHHHHHcCCCCEEEECch
Confidence 4468899999999999999999855
No 87
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=73.93 E-value=6.3 Score=29.66 Aligned_cols=60 Identities=12% Similarity=-0.089 Sum_probs=35.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH-HHHHHHHHhcC-CCee-eCCCCC--cceeEEEEeCCChh
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV-PYVKLFLAKNC-KNFT-TGPTYS--VGGFGFAFPKDSAY 62 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~-~~l~~~~~~~~-~~~~-~~~~~~--~~~~g~a~~Kgspl 62 (138)
++.+.+.++.+.+|.+|++|.++... ++... ..+.. ..+. .-.... .....|++++++|.
T Consensus 40 ~~~~~~~~~~i~al~~G~vDi~~~~~~~~~~~-~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds~i 104 (310)
T 3n5l_A 40 AFFAPDYAGIIQGMRFDKVDIAWYGNKAAMEA-VDRAHGEIFAQTVAASGAPGYWSLLIANKDSKI 104 (310)
T ss_dssp EECCSSHHHHHHHHHTTSCSEEECCHHHHHHH-HHHSCEEEEEEEEETTCCSEEEEEEEEETTCSC
T ss_pred EEeCCCHHHHHHHHHcCCCCEEEECcHHHHHH-HHhcCCeEEEEEeccCCCcceEEEEEEECCCCC
Confidence 34567889999999999999998763 33322 22221 1122 100111 12347888999875
No 88
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=73.74 E-value=4.8 Score=30.17 Aligned_cols=76 Identities=16% Similarity=0.303 Sum_probs=52.4
Q ss_pred CeeecCCHHHHHHHHHcCCceEEEe-cHHHHHHHHHhc-CCCee-eCCCC----------------CcceeEEEEeCCCh
Q 039381 1 NIEPIFSENRHRQALTSGEIAAAFL-EVPYVKLFLAKN-CKNFT-TGPTY----------------SVGGFGFAFPKDSA 61 (138)
Q Consensus 1 ~i~~~~~~~e~~~aL~~G~vdA~i~-d~~~l~~~~~~~-~~~~~-~~~~~----------------~~~~~g~a~~Kgsp 61 (138)
+++.|.+..+--.||.+|++||=.+ ..|++..+.+++ ...+. ++..+ -.++--||+|.+..
T Consensus 36 eiv~F~Dy~~pN~AL~~G~iDaN~fQH~pyL~~~~k~~~g~~lv~v~~~~~~P~glYS~k~ksl~dl~~Ga~IaIPnDpt 115 (249)
T 4got_A 36 KVKVLSDYKMYNKALADKEVDANYFQHIPYLEQEMKENTDYKLVNAGAVHLEPFGIYSKTYKSLKDLPDGATIILTNNVA 115 (249)
T ss_dssp EEECCSSTHHHHHHHHTTSCSEEEEEEHHHHHHHHHHCTTCCEEEEEEEEECCCEEECSSCSSGGGCCTTCEEEEECCGG
T ss_pred EEEEeCCccchhHHHHcCCcceeeccCHHHHHHHHHhCCCCceEEeeeeeeccccccccCcCchhhcCCCCEEEEecCcc
Confidence 3788999999999999999999665 788888776654 32355 55432 12456677776632
Q ss_pred hHHHHHHHHHHHhhcCcH
Q 039381 62 YLADFSQAILQLSEEGKL 79 (138)
Q Consensus 62 l~~~in~~l~~l~~~G~~ 79 (138)
.-.++|.-|++.|.+
T Consensus 116 ---N~~RaL~lL~~aGLI 130 (249)
T 4got_A 116 ---EQGRMLAMLENAGLI 130 (249)
T ss_dssp ---GHHHHHHHHHHTTSC
T ss_pred ---chHHHHHHHHHCCCE
Confidence 234667777777755
No 89
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=73.59 E-value=4.1 Score=30.23 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=25.5
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHHHHhc
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLFLAKN 37 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~ 37 (138)
+.+++..+|.+|++||.+.-.|.+.....+.
T Consensus 131 ~~~~~~~al~~G~vDa~~~~eP~~~~a~~~~ 161 (283)
T 3hn0_A 131 TAGEITQGILAGKVNRAVLGEPFLSIALRKD 161 (283)
T ss_dssp SHHHHHHHHHHTSCSEEEECTTHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCCEEEecccHHHHHHhhC
Confidence 5899999999999999998778776655444
No 90
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=73.22 E-value=17 Score=26.77 Aligned_cols=130 Identities=8% Similarity=-0.025 Sum_probs=67.2
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLR 80 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~ 80 (138)
+..+++.++..+.+.+|++++.+.-...+....+... .+. +-+.-.....+++++|+++-.+.--+.|.-|. +.+.+
T Consensus 176 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~-s~e~q 253 (320)
T 4euo_A 176 IIWWSGGAQSQQLIASAEAPFGSVWNGRMTALEQSGV-KVETSWAQNITAADSLVVPKGTKNKDAAMKFIALAT-SAQAQ 253 (320)
T ss_dssp EEEECSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTTC-CCEEEEEEEEEEEEEEECBTTCSCHHHHHHHHHHHT-SHHHH
T ss_pred eeEeCCCchHHHHHHcCCEEEEEeecHHHHHHHhCCC-CeEEEecCceeecceEEEECCCCCHHHHHHHHHHHh-CHHHH
Confidence 3456777889999999999988865444433333333 355 32211223457899999876555555454443 44455
Q ss_pred HHHHHhcCCCCCCCCC----CCCccCCcccccccceeeee--hhhhhhhHhhhhhhhcc
Q 039381 81 ELEEAMLSPYNCSTKE----NNEDLEGLGLRSFQDEQSSP--SQSRTREHWLSAWEMEN 133 (138)
Q Consensus 81 ~l~~kW~~~~~c~~~~----~~~~~~~l~~~~~~G~F~~~--g~~~~~~~~~~~~~~~~ 133 (138)
+...+..+..+..... .......+...+...++.+- -+.--++.|...|+.+.
T Consensus 254 ~~~~~~~~~~p~~~~a~~~l~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~r~~~~~ 312 (320)
T 4euo_A 254 ADMATATGYAPVNIESAKLMDPKIAKSLPDQQTESQVNADMNYWAQHRDEIGERWYAWQ 312 (320)
T ss_dssp HHHHHHHSCBCSBTTSGGGSCHHHHTTSGGGCCTTEEECCHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCHHHHhhCCHHHHhhCCCcchhhccCcCHHHHHHhHHHHHHHHHHHh
Confidence 5555543322221110 00000111111333333322 23456778888887653
No 91
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=72.97 E-value=10 Score=28.79 Aligned_cols=57 Identities=11% Similarity=-0.089 Sum_probs=35.1
Q ss_pred eecCCHHHHHHHHHcCCceEEEec-HHHHHHHHHhcCCCee-eCCC-----CCcceeEEEEeCCChh
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLE-VPYVKLFLAKNCKNFT-TGPT-----YSVGGFGFAFPKDSAY 62 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d-~~~l~~~~~~~~~~~~-~~~~-----~~~~~~g~a~~Kgspl 62 (138)
+.+.+.++.+++|.+|++|.++.. .++... ..+. . .. +..+ .......|++++++|.
T Consensus 51 ~~~~~~~~~i~aL~~G~vDia~~~~~~~~~~-~~~~-~-~~~~a~~~~~~g~~~y~~~lvv~~ds~i 114 (321)
T 3p7i_A 51 FFAPDYAGIIQGMRFNKVDIAWYGNLSAMEA-VDRA-N-GQVFAQTVAADGSPGYWSVLIVNKDSPI 114 (321)
T ss_dssp ECCSSHHHHHHHHHTTSCSEEECCHHHHHHH-HHHS-C-EEEEEEEEETTCCSSBCEEEEEETTCSC
T ss_pred EecCCHHHHHHHHHcCCCcEEEEChHHHHHH-HHhc-C-CEEEEEEeccCCCcceEEEEEEECCCCC
Confidence 446788999999999999999875 333322 2222 1 22 2111 1122357899999885
No 92
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A
Probab=72.92 E-value=8.3 Score=33.00 Aligned_cols=27 Identities=19% Similarity=0.136 Sum_probs=23.0
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPY 29 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~ 29 (138)
+.-.+.+++++++++|++|+++.|.-.
T Consensus 372 v~~~s~~~Ci~~I~~g~AD~~~ld~~~ 398 (689)
T 1blf_A 372 ATASTTDDCIVLVLKGEADALNLDGGY 398 (689)
T ss_dssp EEESSHHHHHHHHHHTSCCEEEECHHH
T ss_pred EeCCCHHHHHHHHHcCCCCEEEeCcHH
Confidence 445789999999999999999999443
No 93
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=72.60 E-value=6.3 Score=33.75 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=36.6
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCC-----------c-ceeEEEEe-CCC
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYS-----------V-GGFGFAFP-KDS 60 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~-----------~-~~~g~a~~-Kgs 60 (138)
+.-.+..++++++++|++|++..|.... |...+ ++... +.+.+. . ..|++|+- |++
T Consensus 372 v~~~s~~~Ci~~I~~g~AD~~~ld~~~~-y~A~~-~gL~Pv~~E~y~~~~~c~~~~g~~~~Y~aVAVVkk~s 441 (686)
T 2d3i_A 372 TVVDETKDCIIKIMKGEADAVALDGGLV-YTAGV-CGLVPVMAERYDDESQCSKTDERPASYFAVAVARKDS 441 (686)
T ss_dssp EEESSHHHHHHHHHHTSCCBEEECHHHH-HHHHH-TTCEEEEEEECSCGGGC------CCCEEEEEEEESSS
T ss_pred EeCCCHHHHHHHHHcCCCCEEEECchHH-hhhhc-CCceeeEEEeecccccccccCCCCceEEEEEEEecCC
Confidence 4557899999999999999999995543 33334 54222 444333 1 46777665 554
No 94
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=72.12 E-value=4 Score=30.96 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=30.8
Q ss_pred eeecCCHHHHHHHHHcCCceEEEe-cHHHHHHHHHhc-CCCee
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFL-EVPYVKLFLAKN-CKNFT 42 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~-d~~~l~~~~~~~-~~~~~ 42 (138)
++.|++..+..+||.+|++|+... ..+.+..+.+.. ...+.
T Consensus 69 ~~~f~~~~~~~~AL~~G~iD~~~~~~~~~l~~~~~~~~g~~l~ 111 (295)
T 1p99_A 69 IKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKIS 111 (295)
T ss_dssp EEECSSTTSHHHHHHTTSSSEEEEEEHHHHHHHHHHCTTCCEE
T ss_pred EEEeCChHHHHHHHHcCCCCEEccCCHHHHHHHHHhcCCCCEE
Confidence 678999999999999999999764 677776655443 33355
No 95
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=71.72 E-value=3 Score=31.27 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=36.0
Q ss_pred CHHHHHHHHHcCCceEEEec-HHHH--HHHHHhcCCCee-eCCCCCcceeEEEEeCCCh
Q 039381 7 SENRHRQALTSGEIAAAFLE-VPYV--KLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSA 61 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d-~~~l--~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgsp 61 (138)
+...++++|.+|++|++..- .|.. .++.+... .+. ++..+....||+++|+..+
T Consensus 52 ~~~~~~~AL~~G~iD~~~e~w~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~l~V~~~~~ 109 (280)
T 3tmg_A 52 TTSIMYQYLASGKIDGTVSSWVPTADKFYYEKLKT-KFVDLGANYEGTIQGFVVPSYVP 109 (280)
T ss_dssp CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGG-GEEEEEEEEEEEEEEEEEETTSC
T ss_pred CcHHHHHHHHCCCCcEEEeccCCcccHHHHHHhcC-cEEEccccCCCceEEEEECCCCC
Confidence 45678999999999998752 2221 23222222 477 7766655679999999764
No 96
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=71.65 E-value=5.5 Score=30.12 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=37.8
Q ss_pred eecCCHHHHHHHHHcCCceEEEec-HHH-HHHHHHh-cCCCee-eCCCCCcceeEEEEeCCC
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLE-VPY-VKLFLAK-NCKNFT-TGPTYSVGGFGFAFPKDS 60 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d-~~~-l~~~~~~-~~~~~~-~~~~~~~~~~g~a~~Kgs 60 (138)
+.+-+...++++|.+|++|++..- .+. ..++.+- ....+. ++.......+|+++|+..
T Consensus 41 ~~~~~~~~~~~Al~~G~iDi~~e~w~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~~~ 102 (309)
T 1r9l_A 41 PSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKT 102 (309)
T ss_dssp CEECCHHHHHHHHHHTSSCEEEEEEETTTHHHHHHTTGGGTEEECSCSEEEEEEEEEEEHHH
T ss_pred eecCchHHHHHHHhcCCceEEeccccCccHHHHHHhhcCCcEEEecccCCCceEEEEEchhh
Confidence 344578889999999999998732 222 2333331 222477 776545567999999863
No 97
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=71.17 E-value=17 Score=26.46 Aligned_cols=78 Identities=10% Similarity=0.002 Sum_probs=47.8
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-e---CCC-CCcceeEEEEeCCChhHHHHHHHHHHHhhc
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-T---GPT-YSVGGFGFAFPKDSAYLADFSQAILQLSEE 76 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~---~~~-~~~~~~g~a~~Kgspl~~~in~~l~~l~~~ 76 (138)
++..++..+.++.+.+|++|+.+.-...+. . .. .+. + ++. .....|++++.|++. ...-+.+.+...+
T Consensus 166 ~v~~~~~~~~~~~v~~Gead~giv~~s~a~---~-~~-~v~~v~~~P~~~~~~i~~~~ai~k~~~--~~~A~~Fi~fl~S 238 (253)
T 3gzg_A 166 LAESESVRAALMLVSRGEAPLGIVYGSDAR---A-DA-KVRVVATFPDDSHDAIVYPVAALKNSN--NPATAAFVSWLGS 238 (253)
T ss_dssp EEEESSHHHHHHHHHTTSSSEEEEEHHHHH---H-CT-TEEEEEECCGGGSCCEEEEEEECTTCC--CTTHHHHHHHTTS
T ss_pred eeecCCHHHHHHHHHcCCCCEEEEEhhccc---c-CC-CceEEEECCcccCceeEEEEEEECCCC--hHHHHHHHHHHcC
Confidence 445678889999999999999887544332 1 22 244 3 333 245678999998851 1122233444445
Q ss_pred CcHHHHHHHh
Q 039381 77 GKLRELEEAM 86 (138)
Q Consensus 77 G~~~~l~~kW 86 (138)
.+-+++..+|
T Consensus 239 ~eaq~i~~~~ 248 (253)
T 3gzg_A 239 KPAKAIFARR 248 (253)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 5566777766
No 98
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=69.37 E-value=4.5 Score=27.75 Aligned_cols=25 Identities=16% Similarity=-0.007 Sum_probs=20.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
++.+++..+++.+|++|++|+++..
T Consensus 48 ~~~~~~~~~~~~~l~~g~~D~~~~~ 72 (233)
T 1ii5_A 48 YVRQNSISAGITAVAEGELDILIGP 72 (233)
T ss_dssp EEECSCHHHHHHHHHTTSCSEEEEE
T ss_pred EEEeCCHHHHHHHHHCCCcCEEEee
Confidence 4456688999999999999998753
No 99
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ...
Probab=68.77 E-value=8.7 Score=32.89 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=22.9
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPY 29 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~ 29 (138)
+.-.+.+++++++++|++|++..|.-.
T Consensus 372 v~~~s~~~Ci~~I~~g~AD~~~ld~~~ 398 (691)
T 1cb6_A 372 SSASTTEDCIALVLKGEADAMSLDGGY 398 (691)
T ss_dssp EEESSHHHHHHHHHHTSCCBEEECHHH
T ss_pred EeCCCHHHHHHHHHcCCCCEEEeCcHH
Confidence 345788999999999999999999543
No 100
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=67.57 E-value=11 Score=32.26 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=36.3
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee--eCCCCC-----------------cceeEEEE-eCC
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT--TGPTYS-----------------VGGFGFAF-PKD 59 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~--~~~~~~-----------------~~~~g~a~-~Kg 59 (138)
.-.+..++++++++|++||+..|.-.+ |...+ ++ +. +.+.+. ...|++|+ +|+
T Consensus 370 ~~~s~~dCi~~I~~g~ADa~tldgg~v-y~Ag~-~~-L~Pv~~E~y~~~~~~~~~~~~c~~~~~~~YyaVAVVkks 442 (687)
T 3mc2_A 370 TEETPEDCIAATMKGEADAMSLDGGFA-YVAGH-CG-LVPVLAENYLSTHSSGRLGSKCVNAPLEGYYVVAVVKKS 442 (687)
T ss_dssp EESSHHHHHHHHHHTSSCBEEECHHHH-HHHHH-TT-CEEEEECCBCCCSCSSCCSTTSTTCCCCCEEEEEEEESS
T ss_pred eCCCHHHHHHHHhCCCCCEEEECchHh-eehhh-cC-cEEEeeecccccccccccccccccCCCceEEEEEEEecC
Confidence 446889999999999999999995543 33333 65 44 544442 23789887 563
No 101
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=66.38 E-value=43 Score=25.90 Aligned_cols=81 Identities=14% Similarity=0.057 Sum_probs=48.5
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCC--------------------------CCcceeEEE
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPT--------------------------YSVGGFGFA 55 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~--------------------------~~~~~~g~a 55 (138)
..-++..+.++.|.+|++|+.+.-...+... .- .+. +++. .....|+++
T Consensus 224 v~~~~v~~~l~~v~~G~aDag~vy~S~a~~~---~l-~~v~lP~~~n~~~~~~~~~y~~v~v~~~~~~~~~~~Pi~y~~a 299 (354)
T 3k6v_A 224 MLRSMEVELSSALETGEIDYLYIYRSVAEQH---GF-EYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVT 299 (354)
T ss_dssp EEESSHHHHHHHHHHTSCSEEEEEHHHHHHH---TC-EEEECCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEE
T ss_pred EeCCCHHHHHHHHHcCCCCEEEEEhhhhhhc---CC-cEEeCChhhccccccccccccceeeeccccccccCCceeEeEE
Confidence 3457888999999999999988765544321 11 122 2221 123479999
Q ss_pred EeCCChhHHHHHHHHHHHhhcCcHHHHHHHhcC
Q 039381 56 FPKDSAYLADFSQAILQLSEEGKLRELEEAMLS 88 (138)
Q Consensus 56 ~~Kgspl~~~in~~l~~l~~~G~~~~l~~kW~~ 88 (138)
+.|+++-.+.-...+. ...+.+-+++..++.-
T Consensus 300 i~k~a~~~~~A~~Fi~-fL~S~eaq~i~~~~Gf 331 (354)
T 3k6v_A 300 IPNNAENSELATEFVA-LLLGETGQQIFIENGQ 331 (354)
T ss_dssp CCTTCTTHHHHHHHHH-HHHSHHHHHHHHHTTC
T ss_pred eecCCCCHHHHHHHHH-HHcCHHHHHHHHHCCC
Confidence 9999764444333333 3334456777777643
No 102
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ...
Probab=66.22 E-value=8.2 Score=33.07 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=37.6
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHH-hcCCCee--eCCCCC------cceeEEEEe-CCCh
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLA-KNCKNFT--TGPTYS------VGGFGFAFP-KDSA 61 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~-~~~~~~~--~~~~~~------~~~~g~a~~-Kgsp 61 (138)
+.-.+..++++++++|++|++..|.-.+ |... +.++ +. +.+.+. ...|++|+- |+++
T Consensus 37 v~~~s~~~Ci~~I~~g~AD~~~ld~~~v-y~A~~~~~~-L~pi~~E~y~~~~~~~~~Y~aVAVVkk~s~ 103 (691)
T 1cb6_A 37 IKRDSPIQCIQAIAENRADAVTLDGGFI-YEAGLAPYK-LRPVAAEVYGTERQPRTHYYAVAVVKKGGS 103 (691)
T ss_dssp EECSSHHHHHHHHHTTSCCBEEECHHHH-HHHHSTTTC-EEEEEEEEEEETTEEESEEEEEEEEETTCC
T ss_pred EeCCCHHHHHHHHhcCCCCEEEEChHHh-heeccccCC-CEEEEEEeecCCCCCCCceEEEEEEECCCC
Confidence 3456889999999999999999995432 3333 3344 55 443332 357888764 6665
No 103
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=66.14 E-value=12 Score=32.07 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=36.5
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHH-hcCCCee--eCCCCC------cceeEEEE-eCCCh
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLA-KNCKNFT--TGPTYS------VGGFGFAF-PKDSA 61 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~-~~~~~~~--~~~~~~------~~~~g~a~-~Kgsp 61 (138)
+.-.+..++++++++|++|++..|.-.+ |... +.++ +. +.+.+. ...|++|+ +|+++
T Consensus 37 v~~~s~~~Ci~~I~~g~AD~~~ld~~~~-y~A~~~~~~-L~pi~~E~y~~~~~~~~~Y~aVAVVkk~s~ 103 (686)
T 2d3i_A 37 VQKATYLDCIKAIANNEADAISLDGGQV-FEAGLAPYK-LKPIAAEVYEHTEGSTTSYYAVAVVKKGTE 103 (686)
T ss_dssp EECSSHHHHHHHHHTTSCCBEEECHHHH-HHHHSTTTC-CEEEEEEEBCCTTCCBSEEEEEEEEETTCC
T ss_pred EeCCCHHHHHHHHHcCCCCEEEeCccce-EEeccccCC-CEEEEEEeecCCCCCCCceEEEEEEECCCC
Confidence 3456889999999999999999994433 3333 3344 44 433332 34577766 55554
No 104
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=65.94 E-value=15 Score=26.77 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHcCCceEEEecHHHHHHHHHhc---------CCCee-eCCCCCcceeEEEEeCCChh
Q 039381 5 IFSENRHRQALTSGEIAAAFLEVPYVKLFLAKN---------CKNFT-TGPTYSVGGFGFAFPKDSAY 62 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~---------~~~~~-~~~~~~~~~~g~a~~Kgspl 62 (138)
..+..+.+++|.+|++|..+............. ...+. +.. +...++.+++++++|+
T Consensus 57 ~~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~lvv~~~~~i 123 (314)
T 1us5_A 57 TGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAA-LYPEVVHVVARKDAGI 123 (314)
T ss_dssp CSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEE-EEEEEEEEEEETTSSC
T ss_pred cCcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchhehhh-cCcceEEEEEECCCCC
Confidence 456778999999999998877544322111211 12355 432 3456788899988774
No 105
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=65.82 E-value=5.6 Score=27.08 Aligned_cols=24 Identities=8% Similarity=0.018 Sum_probs=20.2
Q ss_pred eeecCCHHHHHHHHHcCCceEEEe
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFL 25 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~ 25 (138)
++.+++..+++.+|.+|++|+++.
T Consensus 44 ~~~~~~~~~~~~~l~~g~~D~~~~ 67 (228)
T 2pyy_A 44 LIEYSSVPELISAIKDNKVNLGIA 67 (228)
T ss_dssp EEECSSHHHHHHHHHTTSCSEECS
T ss_pred EEEcCCHHHHHHHHHCCCcCEEEe
Confidence 456678889999999999999864
No 106
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A
Probab=65.70 E-value=9.7 Score=32.58 Aligned_cols=57 Identities=16% Similarity=0.074 Sum_probs=36.4
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHH-hcCCCee--eCCCCC------cceeEEEE-eCCCh
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLA-KNCKNFT--TGPTYS------VGGFGFAF-PKDSA 61 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~-~~~~~~~--~~~~~~------~~~~g~a~-~Kgsp 61 (138)
+.-.+..++++++++|++|+++.|.-.. |... +.++ +. +.+.+. ...|++|+ +|+++
T Consensus 37 v~~~s~~~Ci~~I~~g~AD~~~ld~~~~-y~A~~~~~~-l~pv~aE~y~~~~~~~~~Y~aVAVVkk~s~ 103 (689)
T 1blf_A 37 VRRAFALECIRAIAEKKADAVTLDGGMV-FEAGRDPYK-LRPVAAEIYGTKESPQTHYYAVAVVKKGSN 103 (689)
T ss_dssp EECSSHHHHHHHHHTTSCCBEEECHHHH-HHHHSTTTC-EEEEEEEEEECSSSEESEEEEEEEEESSCC
T ss_pred EEcCCHHHHHHHHHcCCCCEEEEChhHe-EEeccccCC-CEEEEEEeecCCCCCCcceEEEEEEeCCCC
Confidence 3456889999999999999999994432 3333 3344 44 333332 34677766 45554
No 107
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=64.59 E-value=6.1 Score=29.31 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=37.9
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHHH-HHHHhcCCCee-eCCCCCcceeEEEEeCCChh
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYVK-LFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAY 62 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l~-~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl 62 (138)
.|.+..+.++.+.+|.+|.++...+... .++++. +. ...++....+-++.|+++|.
T Consensus 39 ~~~gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G---~~~~~~~~a~N~LVLV~P~~~Pa 96 (242)
T 3kn3_A 39 VAVGTGNALKLGENCDVDVVFVHAPKVELEYVEKG---FGIDRTPVMYNDFVIIGNPSFKQ 96 (242)
T ss_dssp EEECHHHHHHHHHTTCCSEEEECCHHHHHHHHHHT---SEEEEEEEECSCEEEEECTHHHH
T ss_pred EEcCcHHHHHHHhcCCCCEEEecChHhHHHHHhcC---CCccceEEEcceEEEEEeCCCcc
Confidence 4667788999999999999998655433 333332 12 22334455688999999883
No 108
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=64.01 E-value=11 Score=27.61 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCceEEEe--cHHHHHHHHHhcCCCee-eCC-CCC---cceeEEEEeCC----Ch-hHHHHH----HHHHH
Q 039381 9 NRHRQALTSGEIAAAFL--EVPYVKLFLAKNCKNFT-TGP-TYS---VGGFGFAFPKD----SA-YLADFS----QAILQ 72 (138)
Q Consensus 9 ~e~~~aL~~G~vdA~i~--d~~~l~~~~~~~~~~~~-~~~-~~~---~~~~g~a~~Kg----sp-l~~~in----~~l~~ 72 (138)
.+.+.+|.+|++||++. ..+.. +...+....+. ... ... .....++++++ +| +.+.+. ++...
T Consensus 142 ~~~~~al~~G~vDa~~~~~~~~~~-~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~ 220 (302)
T 3ix1_A 142 FELGASIVSGRADAVVGTYINHEY-PVLKHEGHDISYFNPVDYGVPEYDELVLISNEAYVEESGEVLAAFWRAALKGYEW 220 (302)
T ss_dssp TCHHHHHHHSSSSEEEEEETTTHH-HHHHHTTCCEEEECGGGTTCCCCCSEEEEEEHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHhCCCCCEEEEeeecchH-HHHHhcCCCceEeCHHHcCCCCCcccEEEECHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 45778999999999873 32222 22333322233 321 221 12346677664 44 444444 44444
Q ss_pred Hhhc-CcHHHHHHHhcC
Q 039381 73 LSEE-GKLRELEEAMLS 88 (138)
Q Consensus 73 l~~~-G~~~~l~~kW~~ 88 (138)
+.++ .+..++..++.+
T Consensus 221 ~~~~p~e~~~~~~~~~~ 237 (302)
T 3ix1_A 221 MVENPDEALNVLLTNQD 237 (302)
T ss_dssp HHHSHHHHHHHHHHTSC
T ss_pred HHhCHHHHHHHHHHhcc
Confidence 4444 234455555554
No 109
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=63.42 E-value=10 Score=27.05 Aligned_cols=23 Identities=26% Similarity=0.088 Sum_probs=19.7
Q ss_pred eeecCCHHHHHHHHHcCCceEEE
Q 039381 2 IEPIFSENRHRQALTSGEIAAAF 24 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i 24 (138)
++.+.+..+++.+|++|++|++.
T Consensus 75 ~~~~~~~~~~~~~l~~G~~D~~~ 97 (267)
T 3mpk_A 75 IIGVDTVEELIAKLRSGEADMAG 97 (267)
T ss_dssp EEEESSHHHHHHHHHHTSCSEEE
T ss_pred EEecCCHHHHHHHHHCCCccEEe
Confidence 45577899999999999999965
No 110
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=61.34 E-value=12 Score=27.59 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=26.2
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLA 35 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~ 35 (138)
+..|.+.++..++|.+|++|..+...........
T Consensus 37 ~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~ 70 (283)
T 3hn0_A 37 VKVVDSPDLAQALLIKQETDIAVLPMINAANLYN 70 (283)
T ss_dssp EEEESCHHHHHHHHHTTCCSEEEEEHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHCCCCCEEEEcHHHHHHHHH
Confidence 4678999999999999999998886544433333
No 111
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=59.79 E-value=39 Score=24.61 Aligned_cols=78 Identities=12% Similarity=0.005 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHHHHHH
Q 039381 6 FSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLRELEE 84 (138)
Q Consensus 6 ~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~~l~~ 84 (138)
.+..+..+.+.+|++++.+.-............ .+. +-+.-.....+++++|+++-.+.--+.|.-|. +-+.++...
T Consensus 185 ~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~k~s~~~~~A~~fi~fl~-s~e~q~~~~ 262 (324)
T 4i1d_A 185 TSGAQSAQLLNDGEVDMEMAWNGRVSAVAKEGA-KVSFTYNQGILQSTSLCILKGAPNLETAVKFLNEAV-DPVHQANLP 262 (324)
T ss_dssp CSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTTC-SEEEEEEEEEEEEEEEEEBTTCTTHHHHHHHHHHHT-CHHHHHHGG
T ss_pred cCcchHHHHHhCCCEEEEecccHHHHHHHhcCC-CeEEEecCeeeeccEEEEECCCCCHHHHHHHHHHHh-CHHHHHHHH
Confidence 567788999999999988865444433333333 355 32211223458899999886655555555444 334444433
Q ss_pred H
Q 039381 85 A 85 (138)
Q Consensus 85 k 85 (138)
+
T Consensus 263 ~ 263 (324)
T 4i1d_A 263 L 263 (324)
T ss_dssp G
T ss_pred H
Confidence 3
No 112
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=58.60 E-value=12 Score=28.01 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=34.9
Q ss_pred CHHHHHHHHHcCCceEEEec-HHH-HHHHHHh-cCCCee-eCCCCCcceeEEEEeCCC
Q 039381 7 SENRHRQALTSGEIAAAFLE-VPY-VKLFLAK-NCKNFT-TGPTYSVGGFGFAFPKDS 60 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d-~~~-l~~~~~~-~~~~~~-~~~~~~~~~~g~a~~Kgs 60 (138)
+.+.++++|.+|++|+++.. .+. ..++.+. ....+. ++.......+|+++|+..
T Consensus 43 ~~~~~~~Al~~G~iD~~~~~w~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~~~ 100 (298)
T 2rin_A 43 SVPVTYTSLKNKDIDVFLGNWMPTMEADIAPYREDKSVETVRENLAGAKYTLATNAKG 100 (298)
T ss_dssp CHHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHTTTSEEEEEEEEEEEEEEEEEEHHH
T ss_pred CcHHHHHHHHcCCcEEEhhhccCchHHHHHHHhhCCCEEEeccCCCCCeEEEEEchhH
Confidence 56778999999999998732 222 2222222 223477 766544567999999853
No 113
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=58.00 E-value=22 Score=26.71 Aligned_cols=65 Identities=8% Similarity=-0.070 Sum_probs=37.0
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHHH-HhcCCCeeeCCCCCcceeEEEEeCC-----Ch-hHHHHHHHHHH
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLFL-AKNCKNFTTGPTYSVGGFGFAFPKD-----SA-YLADFSQAILQ 72 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~~-~~~~~~~~~~~~~~~~~~g~a~~Kg-----sp-l~~~in~~l~~ 72 (138)
..+|.+++|++|.||+.....+.+...- .+....+.... .......+++.+. ++ .++.|..+..+
T Consensus 169 ~~~Evy~ALq~G~vDg~~~~~~~~~~~~~~ev~ky~~~~~-~~~~~~~~~~n~~~~~~L~~~~q~~i~~a~~~ 240 (312)
T 2xwv_A 169 AFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTN-HILNDQLYLVSNETYKELPEDLQKVVKDAAEN 240 (312)
T ss_dssp CGGGHHHHHHTTSSSEEEEEHHHHHHTTGGGSCSEEECCC-CCEEEEEEEEEHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCcceEeccHHHHhhcchhhccceEEecC-ccccceEEEEeHHHHhhCCHHHHHHHHHHHHH
Confidence 4578999999999999999866552211 11122122221 2233445677664 23 55566665543
No 114
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=58.00 E-value=25 Score=26.52 Aligned_cols=59 Identities=5% Similarity=-0.018 Sum_probs=38.4
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhc--------CCCee-eCCCCCcceeEEEEeCCChh
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKN--------CKNFT-TGPTYSVGGFGFAFPKDSAY 62 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~--------~~~~~-~~~~~~~~~~g~a~~Kgspl 62 (138)
.......+.+.+|.+|++|..+............. ...+. +.. +...+..++++++++.
T Consensus 71 ~~~~g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~~f~~~~~~~d~~~v~~-~~~~~~~lvv~~ds~i 138 (327)
T 4ddd_A 71 SSTTGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLGFYEKMLPMDNLRMLAS-LHKEYLTIVVKKSSNI 138 (327)
T ss_dssp ECCCCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCGGGTTSCCCTTEEEEEE-EEEEEEEEEEETTSSC
T ss_pred EecCcHHHHHHHHHcCCCcEEEECcHHHHHHHhCcCcccccCCCcchhehhc-cCCccEEEEEECCCCC
Confidence 34566778899999999999887655443322221 12355 443 3356788999998764
No 115
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=57.54 E-value=37 Score=25.15 Aligned_cols=63 Identities=19% Similarity=0.094 Sum_probs=36.5
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHHHHh---cCCCee-eCCCCCcceeEEEEeCC-----Ch-hHHHHHHHHHHH
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLFLAK---NCKNFT-TGPTYSVGGFGFAFPKD-----SA-YLADFSQAILQL 73 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~---~~~~~~-~~~~~~~~~~g~a~~Kg-----sp-l~~~in~~l~~l 73 (138)
..+|.+++|++|.|||.....+.. ...+ ....+. .+. ......+++.+. ++ .++.|..+..+.
T Consensus 163 ~~~E~y~ALq~G~vDg~~~~~~~~--~~~~~~ev~ky~~~~~~--~~~~~~~~~n~~~~~~L~~~~q~~i~~a~~~a 235 (301)
T 2pfz_A 163 QQAELAQAMATGVIDSYMSSGSTG--FDTKTYEYIKKFYDTEA--WLPKNAVLVNKKAFDALDPATQQALKKAGAQA 235 (301)
T ss_dssp CGGGHHHHHHTTSCSEEEECHHHH--HHTTGGGTCCEEECCCC--CCCEEEEEEEHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCeeeEEecCcccc--ccccHHHHhhhheeccc--ccceeEEEEcHHHHhcCCHHHHHHHHHHHHHH
Confidence 567899999999999996653332 2222 123233 333 234556777765 23 555666655443
No 116
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=57.12 E-value=14 Score=25.09 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=18.8
Q ss_pred cCCHHHHHHHHHcCC-ceEEEecH
Q 039381 5 IFSENRHRQALTSGE-IAAAFLEV 27 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~-vdA~i~d~ 27 (138)
+.+..+..+.|.+|+ +|.++...
T Consensus 33 ~~~s~~l~~~l~~g~~~Dv~~~~~ 56 (231)
T 1atg_A 33 SGSSGPVYAQIVNGAPYNVFFSAD 56 (231)
T ss_dssp EECHHHHHHHHHTTCCCSEEECSS
T ss_pred ECCcHHHHHHHHcCCCCCEEEeCC
Confidence 566788899999998 99988843
No 117
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=56.14 E-value=4.7 Score=29.80 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHHcCCceEEEe
Q 039381 5 IFSENRHRQALTSGEIAAAFL 25 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i~ 25 (138)
+.+....+++|.+|++|+++.
T Consensus 42 ~g~~~~~~~al~~G~iD~~~e 62 (275)
T 1sw5_A 42 LGGTLVNYEALKRNDIQLYVE 62 (275)
T ss_dssp CCSHHHHHHHHHHTSSSEEEE
T ss_pred CCchHHHHHHHHcCCCcEEEe
Confidence 557788999999999999873
No 118
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=56.10 E-value=50 Score=24.01 Aligned_cols=27 Identities=15% Similarity=0.035 Sum_probs=20.6
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPY 29 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~ 29 (138)
....+..+.++.+.+|++|+.+.-...
T Consensus 183 ~~~~~~~~~~~~v~~Ge~d~gi~~~s~ 209 (292)
T 3cfz_A 183 FVRSKETDLLAPLEAGAFDYLFIYKSV 209 (292)
T ss_dssp EEESSGGGGHHHHHTTSSSEEEEEHHH
T ss_pred eecccHHHHHHHHHCCCCCEEEEEehh
Confidence 445677788999999999988765443
No 119
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A* 3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A* 3qim_A
Probab=55.83 E-value=26 Score=27.89 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=19.8
Q ss_pred eeecCCHHHHHHHHHcCCceEEE
Q 039381 2 IEPIFSENRHRQALTSGEIAAAF 24 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i 24 (138)
++.+++.+..+++|++|++|.+.
T Consensus 196 ~~~i~d~~~~~~al~~GevD~~~ 218 (502)
T 2noo_A 196 FNVIPDPTTRAVAFETGDIDLLY 218 (502)
T ss_dssp EEECCSHHHHHHHHHHSSCCEEE
T ss_pred EEecCCHHHHHHHHHcCCCCEec
Confidence 45678888999999999999876
No 120
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=55.23 E-value=9 Score=27.31 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=30.8
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCeeeCCCCCcceeEEEEeCCCh
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFTTGPTYSVGGFGFAFPKDSA 61 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~~~~~~~~~~~g~a~~Kgsp 61 (138)
+.++ ..+++.+|++|++|+++....... .... .+....++....+.++++++++
T Consensus 85 ~~~~-~~~~~~~l~~G~~D~~~~~~~~~~---~r~~-~~~~s~p~~~~~~~l~~~~~~~ 138 (272)
T 2pvu_A 85 KNIG-WDPLFASLQSKEVDMGISGITITD---ERKQ-SYDFSDPYFEATQVILVKQGSP 138 (272)
T ss_dssp EECC-HHHHHHHHHHTSSSEECSSCBCCH---HHHT-TEEECSCCEEECEEEEEETTCC
T ss_pred EECC-HHHHHHHHhCCCCCEEEeCCcCCH---HHHh-cCccchhhhccceEEEEECCCC
Confidence 4444 789999999999999875311100 0011 1333334445556666666654
No 121
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=54.38 E-value=9.7 Score=27.59 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=19.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
++.++ ..+.+.+|.+|++|+++..
T Consensus 100 ~~~~~-~~~~~~~l~~G~~D~~~~~ 123 (283)
T 2yln_A 100 FKETQ-WDSMMAGLKAGRFDVVANQ 123 (283)
T ss_dssp EEECC-GGGHHHHHHHTSCSEECSS
T ss_pred EEECC-HHHHHHHHHCCCcCEEEec
Confidence 45565 7889999999999998753
No 122
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=54.32 E-value=20 Score=27.48 Aligned_cols=66 Identities=21% Similarity=0.124 Sum_probs=37.6
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHHHH--hcCCCeeeCC-CCCcceeEEEEeCC-----Ch-hHHHHHHHHHH
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLFLA--KNCKNFTTGP-TYSVGGFGFAFPKD-----SA-YLADFSQAILQ 72 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~~~--~~~~~~~~~~-~~~~~~~g~a~~Kg-----sp-l~~~in~~l~~ 72 (138)
..+|.+++|++|.|||.....|...+-.+ +..+.+.... ......+.+++.+. ++ .++.|..+..+
T Consensus 197 ~~~e~y~ALq~G~VDg~~~~~p~~~~~~~~~ev~k~~~~~~~~~~~~~~~~v~n~~~~~~L~~~~q~~l~~a~~~ 271 (365)
T 2hzl_A 197 AGGDIYPALEKGTIDATEWVGPYDDEKLGFFKVAPYYYYPGWWEGGPTVHFMFNKSAYEGLTPTYQSLLRTACHA 271 (365)
T ss_dssp CTTSHHHHHHHTSCSEECCSCHHHHHHHTGGGTCCEEEECBTTCSSCEEEEEEEHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCcceeeccCccchhhcChHHhhheeeccCccccccceEEEEcHHHHhcCCHHHHHHHHHHHHH
Confidence 35689999999999999876565432122 1123233222 12224567888875 33 55555555443
No 123
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris}
Probab=53.93 E-value=48 Score=24.67 Aligned_cols=81 Identities=11% Similarity=-0.024 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHHHHHH
Q 039381 6 FSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLRELEE 84 (138)
Q Consensus 6 ~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~~l~~ 84 (138)
.+..+..+.+.+|+++..+.-........++.. .+. +-+.-.....+++++|+++-.+.--+.|.-|. +-+.++...
T Consensus 220 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~pg~~~~~~~~~i~k~s~~~~~A~~fi~~l~-s~e~q~~~~ 297 (365)
T 3rpw_A 220 TTAAQPPQLILDGEADMCLAYTGSMSKLALEGA-PIDLTFNQGFVYYDFFSIPKGAPNYDNALKLLSWRL-DPKRAAQLT 297 (365)
T ss_dssp CSTTHHHHHHHTTSCSEEEEEHHHHHHHHHHTC-SEEEEEEEEEEEEEEEECBTTCTTHHHHHHHHHHHT-CHHHHHHHH
T ss_pred CCccHHHHHHHcCCeEEEEehhHHHHHHHhCCC-CeEEeeCCeeeeceEEEEECCCCCHHHHHHHHHHHc-CHHHHHHHH
Confidence 466778899999999998865443333333333 355 32211233457899999886665555555444 444555555
Q ss_pred HhcC
Q 039381 85 AMLS 88 (138)
Q Consensus 85 kW~~ 88 (138)
+..+
T Consensus 298 ~~~~ 301 (365)
T 3rpw_A 298 STFP 301 (365)
T ss_dssp HHSC
T ss_pred HhcC
Confidence 5544
No 124
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=53.33 E-value=14 Score=29.68 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=37.6
Q ss_pred eeecCCHHHHHHHHHcCCceEEEe-cHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCC-h-----hHHHHHHHHH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFL-EVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDS-A-----YLADFSQAIL 71 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~-d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgs-p-----l~~~in~~l~ 71 (138)
++.+++.+..+++|++|++|.+.. ....+.. ++...+ +. ...+ ....+.+++.-.. | +|++|+.+|.
T Consensus 193 ~~~~~d~~~~~~al~~GeiD~~~~~~~~~~~~-l~~~~~-~~~~~~~-~~~~~~l~~N~~~~~~~d~~vRqAi~~aID 267 (496)
T 3t66_A 193 FSFNEDASARSLALESGQADIVYRPEVESIET-LQANEG-IMVEATE-TFRTHNLTMNLDRDSLKDVNVRRAVDVLLD 267 (496)
T ss_dssp EEECCCHHHHHHHHHTTSCSEEESCCTTTHHH-HHHSTT-EEEEEEE-CSEEEEEEECTTSTGGGSHHHHHHHHHHSC
T ss_pred EEEcCCHHHHHHHHHcCCCCEecCCCHHHHHH-HhcCCC-cEEEecC-CcceEEEEecCCCCCCCCHHHHHHHHHhcC
Confidence 456788899999999999998753 2122222 333333 44 2211 2234556665443 3 4555555553
No 125
>3tpa_A Heme-binding protein A; glutathione binding protein, SBP; 2.00A {Haemophilus parasuis 29755} SCOP: c.94.1.0
Probab=52.75 E-value=11 Score=30.34 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=20.1
Q ss_pred eeecCCHHHHHHHHHcCCceEEEe
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFL 25 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~ 25 (138)
++.+++.+..+.+|++|++|.+..
T Consensus 223 ~~~~~d~~~~~~al~~GevD~~~~ 246 (521)
T 3tpa_A 223 FSITPDAGTRYAKLKAGECDVIDF 246 (521)
T ss_dssp EEECCCHHHHHHHHHTTSCSEESS
T ss_pred EEEeCCHHHHHHHHHcCCCCEEcC
Confidence 456788889999999999998743
No 126
>3rqt_A Putative uncharacterized protein; ligand binding component, ABC-type import system, nickel, SI DI-peptides, structural genomics; HET: MSE HIS EPE; 1.50A {Staphylococcus aureus}
Probab=52.53 E-value=26 Score=27.87 Aligned_cols=71 Identities=10% Similarity=0.014 Sum_probs=39.2
Q ss_pred eeecCCHHHHHHHHHcCCceEEEe-cHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCC-hhHHHHHHHHHHHhh
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFL-EVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDS-AYLADFSQAILQLSE 75 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~-d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgs-pl~~~in~~l~~l~~ 75 (138)
++.+++.+..+.+|++|++|++.. ....+.. +++..+ +. ... -....+.+++.-.. |+.+.|-+||.-.+.
T Consensus 200 ~~~~~d~~~~~~al~~GeiD~~~~~~~~~~~~-l~~~~~-~~~~~~-~~~~~~~l~~N~~~~~~~d~vRqAl~~aiD 273 (486)
T 3rqt_A 200 VTYQEDGNNRVRNLESQKDDLITDVPVNKVQD-IENNQN-LKVSKE-SGFRTSLLMYNHTNKKMTKSVREALDHIID 273 (486)
T ss_dssp EEECCCHHHHHHHHHTTSCSEEESCCGGGHHH-HHHCTT-EEEEEE-EEEEEEEEEECTTSTTCCHHHHHHHHHHCC
T ss_pred EEECCCHHHHHHHHHcCCCCEEcCCCHHHHHH-HhcCCC-eEEEEe-cCCceEEEEecCCCCccccHHHHHHHHhcC
Confidence 456788899999999999999753 2222222 333333 44 221 11233556666544 454335555554443
No 127
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=51.30 E-value=44 Score=22.43 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=44.6
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhc-CCCee--eCCC-CCcceeEEEEeCCChhHHHHHHHHHHHhhcCc
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKN-CKNFT--TGPT-YSVGGFGFAFPKDSAYLADFSQAILQLSEEGK 78 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~-~~~~~--~~~~-~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~ 78 (138)
...++.+...+++.+|.+++.+.....+.. ... ..... +... .....+.+++.|+++..+.....+. +..+-+
T Consensus 141 ~~~~~~~~~~~~v~~G~~~i~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~a~~fi~-~l~s~~ 217 (231)
T 1atg_A 141 VEANSVGQAHSQTASGAADLGFVALAQIIQ--AAAKIPGSHWFPPANYYEPIVQQAVITKSTAEKANAEQFMS-WMKGPK 217 (231)
T ss_dssp EEESSHHHHHHHHHTTSSSEEEEEGGGTCC--TTSCCSSEEECCCGGGSCCCEEEEEEBTTCSCHHHHHHHHH-HTTSHH
T ss_pred EecCCHHHHHHHHHcCCCCEEEEEHHHhhh--ccccccCeEEEeCcccCccceEeEEEecCCCChHHHHHHHH-HHcCHH
Confidence 345677888999999998877764333211 111 11122 3332 1234567888888765554444443 333334
Q ss_pred HHHHHHHh
Q 039381 79 LRELEEAM 86 (138)
Q Consensus 79 ~~~l~~kW 86 (138)
-+++..++
T Consensus 218 ~q~~~~~~ 225 (231)
T 1atg_A 218 AVAIIKAA 225 (231)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 56665554
No 128
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} SCOP: c.94.1.1
Probab=50.23 E-value=14 Score=29.60 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=19.5
Q ss_pred eeecCCHHHHHHHHHcCCceEEE
Q 039381 2 IEPIFSENRHRQALTSGEIAAAF 24 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i 24 (138)
++.+++.+..+++|++|++|.+.
T Consensus 217 ~~~i~d~~~~~~al~~GevD~~~ 239 (509)
T 1uqw_A 217 WRPVADNNTRAAMLQTGEAQFAF 239 (509)
T ss_dssp EEECCCHHHHHHHHHHTSCSEEC
T ss_pred EEEcCCHHHHHHHHHcCCCCEEc
Confidence 45678888899999999999864
No 129
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=50.16 E-value=35 Score=25.08 Aligned_cols=55 Identities=11% Similarity=0.021 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCC-CCCcceeEEEEeCCCh
Q 039381 5 IFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGP-TYSVGGFGFAFPKDSA 61 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~-~~~~~~~g~a~~Kgsp 61 (138)
..+..+.+++|.+|++|..+...+.....+.. .. +. ... .+..+.+.+++++++|
T Consensus 60 ~~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~-~~-~~~~~~~~l~~d~lvlv~~~~hp 116 (294)
T 3cvg_A 60 KSDTTVTINYLKDGIVDVGITYSPVAERISIK-HG-ISESPSYYAFRDHFMLIGPPSNP 116 (294)
T ss_dssp ECCHHHHHHHHHTTSCSEEEESCHHHHHHHHH-TT-SBCSSCEEEEEEEEEEEECTTCT
T ss_pred eCCHHHHHHHHHcCCCcEEEEcCchhhhHHHh-CC-cccceeeeEEeccEEEEecCCCh
Confidence 45778899999999999988864432211111 11 22 223 4666788899999988
No 130
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=50.05 E-value=5.8 Score=33.99 Aligned_cols=58 Identities=10% Similarity=0.126 Sum_probs=35.9
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee--eCCCC------CcceeEEEE-eCCChh
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT--TGPTY------SVGGFGFAF-PKDSAY 62 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~--~~~~~------~~~~~g~a~-~Kgspl 62 (138)
.-.+..++++++++|++|++..|.--+ |.....+..+. +.+.. ....|++|+ +|++++
T Consensus 47 ~~~d~~~Ci~~I~~g~AD~~~ld~~~v-y~A~~~~~~L~Pi~~E~y~~~~~~~~~YyaVAVVkK~s~i 113 (687)
T 3mc2_A 47 RKMSHPECIRDISANKVDAVTVDGALV-AEADLPHHSLKPIMAEYYGSKDDPKTHYYVVAMAKKGTGF 113 (687)
T ss_dssp ECSCHHHHHHHHHTTSCCBEEECTTGG-GSCSSTTCCEEEEEEEEEECSSSEECEEEEEEEEETTTCC
T ss_pred eCCCHHHHHHHHHCCCCCEEEEChHHH-HhhhcccCCceEEEEEeeecCCCCCceeEEEEEEECCCCC
Confidence 446889999999999999999984422 22211222244 32222 145688875 666654
No 131
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=49.73 E-value=21 Score=26.73 Aligned_cols=51 Identities=14% Similarity=-0.032 Sum_probs=30.8
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHHH-HhcCCCee-eCCCCCcceeEEEEeCC
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLFL-AKNCKNFT-TGPTYSVGGFGFAFPKD 59 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~~-~~~~~~~~-~~~~~~~~~~g~a~~Kg 59 (138)
..+|.+++|++|.||+.....+.....- .+....+. .+. ....+.+++.+.
T Consensus 166 ~~~Evy~ALq~G~VDg~~~~~~~~~~~~~~ev~~y~~~~~~--~~~~~~~~~n~~ 218 (316)
T 2vpn_A 166 PWGEVYGGLQTGIIDGQENPIFWIESGGLYEVSPNLTFTSH--GWFTTAMMANQD 218 (316)
T ss_dssp CGGGHHHHHHHTSCSEEEEEHHHHHHTTGGGTCCEEEECCC--CEEEEEEEEEHH
T ss_pred CHHHHHHHHHcCCcceeeCCHHHHHhcCHHHhhhhheeccc--cccceEEEEcHH
Confidence 4578999999999999998755432111 11123233 332 224567778775
No 132
>3m8u_A Heme-binding protein A; glutathione binding protein, ABC-type transport system, PERI component, transport protein; HET: GDS; 1.85A {Haemophilus parasuis}
Probab=48.80 E-value=11 Score=30.32 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=20.1
Q ss_pred eeecCCHHHHHHHHHcCCceEEEe
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFL 25 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~ 25 (138)
++.+++....+++|++|++|.+..
T Consensus 218 ~~~~~d~~~~~~al~~GevD~~~~ 241 (522)
T 3m8u_A 218 FEIVPDATARYAKLQAGACDLIDF 241 (522)
T ss_dssp EEECCCHHHHHHHHHHTSCSEESS
T ss_pred EEEcCCHHHHHHHHHCCCcceecC
Confidence 456788889999999999998744
No 133
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=47.84 E-value=46 Score=25.11 Aligned_cols=64 Identities=16% Similarity=-0.025 Sum_probs=37.2
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHH-HHhcCCCee-eCCCCCcceeEEEEeCC-----Ch-hHHHHHHHHHH
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLF-LAKNCKNFT-TGPTYSVGGFGFAFPKD-----SA-YLADFSQAILQ 72 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~-~~~~~~~~~-~~~~~~~~~~g~a~~Kg-----sp-l~~~in~~l~~ 72 (138)
..+|.+++|++|-||+.....+..... ..+..+.+. .+.. ...+.+.+.+. ++ .++.|..+..+
T Consensus 180 ~~~Evy~ALq~GvvDg~e~~~~~~~~~~~~Ev~ky~~~~~~~--~~~~~~~~n~~~w~~L~~e~q~~i~~aa~~ 251 (326)
T 3fxb_A 180 PWGEVYGGLQTNVIQGQENPTFFLYSTKIYEVTDYITYAGHN--NFTTAVMANKDFYDGLSAEDQQLVQNAALA 251 (326)
T ss_dssp CGGGHHHHHHTTSCCEEEEEHHHHHHTTGGGSCSEEEECCCC--EEEEEEEEEHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCcceEecCHHHHHhccHhhhcceeEEcCcc--ccceEEEEeHHHHhcCCHHHHHHHHHHHHH
Confidence 357899999999999999875543221 111233233 4432 34566777775 22 45555555443
No 134
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=47.17 E-value=30 Score=25.92 Aligned_cols=55 Identities=20% Similarity=0.110 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHcCCceEEE-ec-HHH-------------HHHHH--Hh-c--CCCee-eCCCCCcceeEEEEeCC
Q 039381 5 IFSENRHRQALTSGEIAAAF-LE-VPY-------------VKLFL--AK-N--CKNFT-TGPTYSVGGFGFAFPKD 59 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i-~d-~~~-------------l~~~~--~~-~--~~~~~-~~~~~~~~~~g~a~~Kg 59 (138)
+.+..-.+++|.+|++|++. .- ... -.++. ++ . ...+. ++.......||+++|+.
T Consensus 49 lg~~~~~~~al~~G~iDv~~~eytGt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~laV~~~ 124 (284)
T 3r6u_A 49 LGSNAVQQQALMNGEIDIAATRYTGDALTGTLRMEPEKDPDKALALTQREFKKRYDLKWYDSYGFDNTYAFTVSKE 124 (284)
T ss_dssp ECSHHHHHHHHHTTSCSEEEEEEHHHHHHHTTCCCCCCSHHHHHHHHHHHHHHHHCEEECCCCSCBCCEEEEEEHH
T ss_pred CCchHHHHHHHHcCCCCEEehhccchhHHHhcCCCCCCCHHHHHHHHHHHhHhhcCeEEeccCCcCCeEEEEEeHH
Confidence 34667789999999999999 30 100 11111 11 1 11366 65544456899999985
No 135
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=45.88 E-value=26 Score=27.32 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=36.6
Q ss_pred eeecCCHHHHHHHHHcCC----ceEEEecH--HHHHHHH---HhcCCCee-eCCCCCcceeEEEEeCCC
Q 039381 2 IEPIFSENRHRQALTSGE----IAAAFLEV--PYVKLFL---AKNCKNFT-TGPTYSVGGFGFAFPKDS 60 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~----vdA~i~d~--~~l~~~~---~~~~~~~~-~~~~~~~~~~g~a~~Kgs 60 (138)
++.+.+..+..++|.+|+ +|+.+.-. +++.... ......+. +.. +...+.+|.+++++
T Consensus 67 ~~~~~~~~~~~~al~~G~~~~giD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~v~~~~ 134 (417)
T 2g29_A 67 VLKQASWGTTRDNLVLGSASGGIDGAHILTPMPYLITMGTVTDGKPTPMYILAR-LNVNGQGIQLGNNY 134 (417)
T ss_dssp EEECSCHHHHHHHHHHCGGGTSCSEEEEETHHHHHHHHCTTSSSCCCCEEEEEE-CCBSCEEEEECGGG
T ss_pred EEecCCHHHHHHHHHCCCCcCCcCeEeecchHHHHHHhCcccCCCCCCEEEEEE-eccCCeEEEEecch
Confidence 456788999999999999 99988632 2222211 11233355 433 23446888888875
No 136
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=45.52 E-value=29 Score=24.64 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=33.6
Q ss_pred ecCCHHHHHHHHHcCC-ceEEEe-cHHHHHHHHHhcCCCee--eCCCCCcceeEEEEeCCC
Q 039381 4 PIFSENRHRQALTSGE-IAAAFL-EVPYVKLFLAKNCKNFT--TGPTYSVGGFGFAFPKDS 60 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~-vdA~i~-d~~~l~~~~~~~~~~~~--~~~~~~~~~~g~a~~Kgs 60 (138)
.|.+..+++..+.+|. +|.++. |...+..+.++.. +. ....+.....+|++++++
T Consensus 39 ~~~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~--~~~~~~~~~~~~~lvl~~~~~~ 97 (237)
T 3r26_A 39 SFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKA--IDTATRQTLLGNSLVVVAPKAS 97 (237)
T ss_dssp EEECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTC--BCGGGCEEEEEECEEEEEESSC
T ss_pred EECCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCC--CCCCceeeeEcceEEEEEeCCC
Confidence 5677888999998887 999998 4444554444321 11 112344445667777664
No 137
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=45.07 E-value=29 Score=25.73 Aligned_cols=62 Identities=15% Similarity=-0.008 Sum_probs=35.7
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHHHHh---cCCCee-eCCCCCcceeEEEEeCC-----Ch-hHHHHHHHHHH
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLFLAK---NCKNFT-TGPTYSVGGFGFAFPKD-----SA-YLADFSQAILQ 72 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~---~~~~~~-~~~~~~~~~~g~a~~Kg-----sp-l~~~in~~l~~ 72 (138)
..+|.+++|++|.|||.....+.. +..+ ....+. .+. ....+.+++.+. ++ .++.|..+..+
T Consensus 164 ~~~E~y~ALq~G~vDg~~~~~~~~--~~~~~~ev~k~~~~~~~--~~~~~~~~~n~~~~~~L~~~~q~~i~~a~~~ 235 (301)
T 2pfy_A 164 QTPEVPQAFSTGVIDAMLTSPATG--VDSQAWDYVKYYYDAQA--FIPQSFVIANKRAFQRLPAEVRQAVLDAGAK 235 (301)
T ss_dssp CGGGHHHHHHTTSCSBEEECHHHH--HHTTGGGTCCEEEECCC--CCCEEEEEEEHHHHHHSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhcceeeeEecCcccc--ccccHHHHhhhhccccc--ccceeeEEEcHHHHhcCCHHHHHHHHHHHHH
Confidence 467899999999999996653332 2222 123233 332 234566777765 22 45555555443
No 138
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=45.03 E-value=43 Score=25.76 Aligned_cols=71 Identities=13% Similarity=0.054 Sum_probs=43.3
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHHHHHHHh--cCCCee-eCCCCC---ccee-----------EEEEeCCChhHHHH
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYVKLFLAK--NCKNFT-TGPTYS---VGGF-----------GFAFPKDSAYLADF 66 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~--~~~~~~-~~~~~~---~~~~-----------g~a~~Kgspl~~~i 66 (138)
.|...+.++..|.+|..|+.+....+....... ..+.+. +-..-. ...| +++++++.+-.+.|
T Consensus 184 ~y~G~~gA~rcL~eG~gDVAfv~~~~v~~~~~~~~~~~d~~lLc~dg~~~pi~~~~~C~l~~~P~~~vv~r~~~~~~~~i 263 (327)
T 1ryo_A 184 QYFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGGKEDLI 263 (327)
T ss_dssp TTCHHHHHHHHHHTTSCSEEEEETTHHHHHCCSHHHHTTEEEECTTSCEEEGGGGGGSCSEEEECCEEEECSSSCCHHHH
T ss_pred CccCcHHHHHHHHcCCccEEEEeccchhhhhhhcccccceeEEccCCcccCCCCCCcceeccCCCceEEEeCCCCHHHHH
Confidence 355577899999999999877754444322211 123366 543221 2234 88999875545667
Q ss_pred HHHHHHHh
Q 039381 67 SQAILQLS 74 (138)
Q Consensus 67 n~~l~~l~ 74 (138)
-..|+++.
T Consensus 264 ~~~l~~~~ 271 (327)
T 1ryo_A 264 WELLNQAQ 271 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777664
No 139
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=44.21 E-value=27 Score=25.37 Aligned_cols=56 Identities=5% Similarity=0.079 Sum_probs=36.0
Q ss_pred ecCCHHHHHHHHHcCC-ceEEEe-cHHHHHHHHHhcCCCee--eCCCCCcceeEEEEeCCCh
Q 039381 4 PIFSENRHRQALTSGE-IAAAFL-EVPYVKLFLAKNCKNFT--TGPTYSVGGFGFAFPKDSA 61 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~-vdA~i~-d~~~l~~~~~~~~~~~~--~~~~~~~~~~g~a~~Kgsp 61 (138)
.|.+..+.++.+++|. +|.++. |...+....++.. +. ....+.....+|++++++|
T Consensus 55 ~~~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl--~~~~~~~~~a~~~lvl~~~~~~~ 114 (253)
T 3gzg_A 55 SYAASSALARQIEQGAPADVFLSADLEWMDYLQQHGL--VLPAQRHNLLGNTLVLVAPASSK 114 (253)
T ss_dssp EEECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTS--SCGGGEEEEEEECEEEEEETTCC
T ss_pred EECChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCC--cCCCcceeEEeeEEEEEEECCCC
Confidence 5677888999999887 999998 4445555544321 11 1123445567888888765
No 140
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=42.94 E-value=45 Score=24.31 Aligned_cols=49 Identities=2% Similarity=-0.118 Sum_probs=30.4
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCC---CCCcceeEEEEeCC
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGP---TYSVGGFGFAFPKD 59 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~---~~~~~~~g~a~~Kg 59 (138)
+.+++..|+++|++|++..-.|.... .+. + +. +.. .|.......+++++
T Consensus 171 ~~~~~~~Al~~g~vd~~~~~~p~~~~--~~~-~-l~~L~d~~~~~~~~~~~~v~~~~ 223 (275)
T 1sw5_A 171 EPTLMYEAIKNKQVDVIPAYTTDSRV--DLF-N-LKILEDDKGALPPYDAIIIVNGN 223 (275)
T ss_dssp CGGGHHHHHHTTSCSEEEEETTCHHH--HHT-T-EEECBCTTCCSCCCEEEEEECTT
T ss_pred CHHHHHHHHHcCCCeEEEEeCCCcch--hcC-C-eEEccCCcccCCccceeeeeehh
Confidence 46688999999999999886664432 222 2 34 322 23334455577766
No 141
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=48.35 E-value=5.3 Score=19.39 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=15.4
Q ss_pred eeeeehhhhhhhHhhhhhhh
Q 039381 112 EQSSPSQSRTREHWLSAWEM 131 (138)
Q Consensus 112 ~F~~~g~~~~~~~~~~~~~~ 131 (138)
+++.+.++...+++++.|++
T Consensus 5 l~iavvlGa~~Gyf~F~~~~ 24 (26)
T 2ls4_A 5 LCIAVAAGAGTGYFLFSWKK 24 (26)
Confidence 45556667888999999985
No 142
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=42.04 E-value=96 Score=22.43 Aligned_cols=79 Identities=15% Similarity=0.093 Sum_probs=44.6
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCC--------------------------CcceeEEE
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTY--------------------------SVGGFGFA 55 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~--------------------------~~~~~g~a 55 (138)
....+..+..+.+.+|++|+.+.-...+.. ..- .+. ++... ....++++
T Consensus 185 ~~~~~~~~~~~~v~~Ge~d~~i~~~s~a~~---~~~-~~~~~P~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~ 260 (295)
T 3cij_A 185 MIRSMEMELIHLVESGELDYFFIYKSVAKQ---HGF-NFVELPVEIDLSSPDYAELYSKVKVVLANGKEVTGKPIVYGIT 260 (295)
T ss_dssp EEESSTHHHHHHHHTTSCSEEEEEHHHHHH---TTC-EEEECCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEE
T ss_pred eecccHHHHHHHHhCCCCCEEEEEeehhhh---CCC-CEEECchhhccCCccccccccceEEeccCCccccCCceEEEEE
Confidence 345667789999999999987764333321 111 122 22221 12358999
Q ss_pred EeCCChhHHHHHHHHHHHhhcCcHHHHHHHh
Q 039381 56 FPKDSAYLADFSQAILQLSEEGKLRELEEAM 86 (138)
Q Consensus 56 ~~Kgspl~~~in~~l~~l~~~G~~~~l~~kW 86 (138)
+.|+++..+.-.+.|.-|.. .+-+++..++
T Consensus 261 i~k~a~~~~~A~~Fi~fl~S-~e~q~i~~~~ 290 (295)
T 3cij_A 261 IPKNAENRELAVEFVKLVIS-EEGQEILREL 290 (295)
T ss_dssp CCTTCSCHHHHHHHHHHHHS-HHHHHHHHHT
T ss_pred eecCCCCHHHHHHHHHHHhC-hhHHHHHHHc
Confidence 99997755544444443333 2335565554
No 143
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=41.74 E-value=19 Score=27.01 Aligned_cols=55 Identities=9% Similarity=0.025 Sum_probs=37.9
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec------HH---HHHHHHHhcCCCee-eCCCCCcceeEEEEeCC
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE------VP---YVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKD 59 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d------~~---~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kg 59 (138)
++.+++.++++.+|.+|++|..|.. .. ++..+ .+. .+. +++.+-.....+..++|
T Consensus 31 ~~~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL-~~~--~l~I~gE~~l~I~h~Ll~~~g 95 (267)
T 2qmw_A 31 FQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADAL-AQQ--DVFAHGEIRLDINFALYGNGT 95 (267)
T ss_dssp EEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHH-HTT--SSEEEEEEEEECCEEEECCSS
T ss_pred EEEcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHh-hcC--CcEEEEEEEEEeeeEEEecCC
Confidence 5789999999999999999977652 11 22222 222 267 77777666777777666
No 144
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=41.60 E-value=13 Score=28.45 Aligned_cols=67 Identities=22% Similarity=0.204 Sum_probs=39.2
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHH--HHhcCCCeeeC--CC---CC-cceeEEEEeCC-----Ch-hHHHHHHHHHH
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLF--LAKNCKNFTTG--PT---YS-VGGFGFAFPKD-----SA-YLADFSQAILQ 72 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~--~~~~~~~~~~~--~~---~~-~~~~g~a~~Kg-----sp-l~~~in~~l~~ 72 (138)
..+|.+++|++|.|||.....+...+. ..+..+.+... .. .. ...+.+++.+. ++ .++.|..+..+
T Consensus 199 ~~~e~~~ALq~G~VDg~~~~~~~~~~~~~~~ev~k~~~~~~~~~~~~~~~~~~~~~vvn~~~~~~L~~~~q~~i~~a~~~ 278 (361)
T 2zzv_A 199 PGGEVYPALERGVIDAADFVGPAVNYNLGFHQVAKYIIMGPPETPAIHQPVDLMDFTINLNRWRSLPKPLQERFIAAVHE 278 (361)
T ss_dssp CGGGHHHHHHTTSCSEEECSCHHHHHHTTHHHHCSEEEECCTTSSCSSCSSCCEEEEEEHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHcCCcceeecCCcchhhhcChhhhcceEEecCCCcccccccCcceEEEEcHHHHhcCCHHHHHHHHHHHHH
Confidence 567899999999999999877765211 11123323322 10 11 24567788774 33 56666665544
Q ss_pred H
Q 039381 73 L 73 (138)
Q Consensus 73 l 73 (138)
.
T Consensus 279 a 279 (361)
T 2zzv_A 279 Y 279 (361)
T ss_dssp H
T ss_pred H
Confidence 3
No 145
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=40.71 E-value=21 Score=27.08 Aligned_cols=55 Identities=15% Similarity=-0.045 Sum_probs=37.8
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec------H---HHHHHHHHhcCCCee-eCCCCCcceeEEEEeCC
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE------V---PYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKD 59 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d------~---~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kg 59 (138)
++.+++.++++++|.+|++|..|.. . .++..+.. . .+. +++.+-.....+..++|
T Consensus 29 ~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~--~-~l~I~gE~~l~I~h~Ll~~~g 93 (283)
T 2qmx_A 29 PLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLR--R-PVVILAETFVKVEHCLLGLPG 93 (283)
T ss_dssp EEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHH--S-SEEEEEEEEEECCCEEEECSS
T ss_pred hCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhc--C-CcEEEEEEEEeeeeeEecCCC
Confidence 5688999999999999999977653 1 12222333 2 377 77776666666666665
No 146
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=40.53 E-value=31 Score=26.22 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCceEEEecHHHHHHH-HHhcCCCee-eCCCCCcceeEEEEeCC-----Ch-hHHHHHHHHHHHh
Q 039381 8 ENRHRQALTSGEIAAAFLEVPYVKLF-LAKNCKNFT-TGPTYSVGGFGFAFPKD-----SA-YLADFSQAILQLS 74 (138)
Q Consensus 8 ~~e~~~aL~~G~vdA~i~d~~~l~~~-~~~~~~~~~-~~~~~~~~~~g~a~~Kg-----sp-l~~~in~~l~~l~ 74 (138)
.+|.+++|++|-||+.....+.+... ..+..+.+. .+ .....+.+++.+. ++ .++.|..+..+..
T Consensus 184 ~~Evy~ALq~GvvDg~e~~~~~~~~~~~~Ev~ky~~~~~--h~~~~~~~~~n~~~w~~L~~e~q~~i~~a~~e~~ 256 (328)
T 3u65_B 184 NARLAPLLKAGSIDGFLSVHLFTWATGFYRYISYALDTK--ICPAVIGMLISDGSWARIPSRYHDAMLQAATRVR 256 (328)
T ss_dssp TCCHHHHHHHTSCCEEEECHHHHHHSCGGGGCCEEECSC--CEEEEEEEEEEHHHHTTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccceEecCHHHHHHcchhhcCcEEEEcC--ccccceEEEEcHHHHhcCCHHHHHHHHHHHHHHH
Confidence 46789999999999999886554211 111133233 44 3334677788764 23 6777776665543
No 147
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=40.13 E-value=1e+02 Score=22.29 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=44.0
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCC--------------------------CcceeEEE
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTY--------------------------SVGGFGFA 55 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~--------------------------~~~~~g~a 55 (138)
....+..+..+.+.+|++|+.+.-...+.. .. - .+. ++... ....++++
T Consensus 186 ~~~~~~~~~~~~v~~Ge~d~~i~~~s~a~~--~~-~-~~~~~P~~~~~~~~~~~~~y~~v~~~~~~g~~~~~~~i~~~~~ 261 (296)
T 3cfx_A 186 MLRSMEVELSSALETGEIDYLYIYRSVAEQ--HG-F-EYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVT 261 (296)
T ss_dssp EEESSGGGGHHHHHTTSCSEEEEEHHHHHH--HT-C-EEECCCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEE
T ss_pred eecccHHHHHHHHHcCCCCEEEeehhhHhh--CC-C-CEEECChhhcccCccccccccceeeeccCCccccCCceEEEEE
Confidence 345677789999999999987764333221 11 1 112 22221 12358999
Q ss_pred EeCCChhHHHHHHHHHHHhhcCcHHHHHHHh
Q 039381 56 FPKDSAYLADFSQAILQLSEEGKLRELEEAM 86 (138)
Q Consensus 56 ~~Kgspl~~~in~~l~~l~~~G~~~~l~~kW 86 (138)
+.|+++..+.-.+.|.-|. +.+-+++..++
T Consensus 262 i~k~a~~~~~A~~Fi~fll-S~e~q~i~~~~ 291 (296)
T 3cfx_A 262 IPNNAENSELATEFVALLL-GETGQQIFIEN 291 (296)
T ss_dssp CCTTCSCHHHHHHHHHHHH-SHHHHHHHHHT
T ss_pred eecCCCCHHHHHHHHHHHh-ChHHHHHHHHc
Confidence 9999875444444343333 33335565554
No 148
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=39.52 E-value=1e+02 Score=22.15 Aligned_cols=81 Identities=16% Similarity=0.019 Sum_probs=43.9
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHHHHHH------------------HhcCCCee--eCCC-----CCcceeEEEEeC
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYVKLFL------------------AKNCKNFT--TGPT-----YSVGGFGFAFPK 58 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~------------------~~~~~~~~--~~~~-----~~~~~~g~a~~K 58 (138)
...+..+..+.+.+|++|+.+.-...+.... +... .+. .+.. .....+++++.|
T Consensus 186 ~~~~~~~~~~~v~~Ge~~~~i~~~s~a~~~~~~~~~~p~~~~~~~~~~~~~~~-~v~~~~p~~g~~~~~~~~~~~~~i~k 264 (296)
T 3cg1_A 186 IRPKETDLLGLVESGSIDYIFIYKSVAKQHNLSYITLPSEINLGDFSKEKFYG-QISITLGSTGKTIKAKPIVYGVTVLK 264 (296)
T ss_dssp EESSGGGGHHHHHHTSSSEEEEEHHHHHHTTCEEEECCTTTSSCCGGGHHHHT-TCEEEETTTCCEEECCCCEEEEEECT
T ss_pred ecCchHHHHHHHhCCCCCEEEEEhhHHHHcCCCeEecChhhcccccccccccc-ceeEEecCCcccccCceeeeeEEEeC
Confidence 4456678899999999998776433332110 0001 122 1111 122467899999
Q ss_pred CChhHHHHHHHHHHHhhcCcHHHHHHHh
Q 039381 59 DSAYLADFSQAILQLSEEGKLRELEEAM 86 (138)
Q Consensus 59 gspl~~~in~~l~~l~~~G~~~~l~~kW 86 (138)
+++..+.-.+.|.-|. +.+-+++..++
T Consensus 265 ~a~~~~~A~~Fi~fl~-s~e~q~~~~~~ 291 (296)
T 3cg1_A 265 DAPNREVAIEFLRYLL-SENGKRIFEKN 291 (296)
T ss_dssp TCTTHHHHHHHHHHHH-SHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHh-ChHHHHHHHHc
Confidence 9875554444444333 33345555554
No 149
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis}
Probab=39.08 E-value=1.1e+02 Score=22.22 Aligned_cols=82 Identities=12% Similarity=-0.202 Sum_probs=46.1
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-e-CC-CCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-T-GP-TYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKL 79 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~-~~-~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~ 79 (138)
..+.+..+..+.+.+|+++..+.-...+.....+....+. + +. .-.....+++++|++ -.+.--+.|.-|. +.+.
T Consensus 190 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~g~~~~~~~~~i~k~s-~~~~A~~Fi~~l~-s~e~ 267 (333)
T 3pu5_A 190 KFFTAFNDPVVLLTSGEGAIGPGWDGRTFIAEDSTKGMVKWVDPTEGAVSSGPVMAVVKGG-KEDLAKAFMNYAL-GEEA 267 (333)
T ss_dssp EEECSTTHHHHHHHHTSCSEEEEEHHHHHHHHHHTTTSSEEECCTTCCEEECCEEEEBTTS-CHHHHHHHHHHHT-SHHH
T ss_pred cccCChHHHHHHHHcCCEEEEecccHHHHHHHhCCCCceeEEcCCCceeeccceEEEeCCC-CHHHHHHHHHHHc-CHHH
Confidence 3456677889999999999888644433333333221144 3 21 112234578999998 5555444444444 4444
Q ss_pred HHHHHHh
Q 039381 80 RELEEAM 86 (138)
Q Consensus 80 ~~l~~kW 86 (138)
++...+.
T Consensus 268 q~~~~~~ 274 (333)
T 3pu5_A 268 QKAFCEA 274 (333)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
No 150
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=39.06 E-value=17 Score=26.50 Aligned_cols=55 Identities=9% Similarity=-0.052 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChh
Q 039381 5 IFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAY 62 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl 62 (138)
..+..+.+++|.+|++|..+.+.+.-.. +.+..-. ...++..+...+++++++|+
T Consensus 38 ~~~S~~~~~~l~~g~~Dig~~~~~~~~~---e~~~~~~l~~~~i~~d~lvvvv~~~~p~ 93 (264)
T 4ecf_A 38 GGGTGTGLSQIQEGAVQIGNSDLFAGEQ---KGINARQLVDHRVAVVGITPIVNKKVGV 93 (264)
T ss_dssp EECHHHHHHHHHHTSSSEEEESSCGGGS---TTCCGGGEECCEEEEEEEEEEECTTSSC
T ss_pred eCCCHHHHHHHHcCCCchhhccCCCChh---HHhhccCCEEEEEEEEEEEEEEcCCCcc
Confidence 4567889999999999999988653211 1111112 34456678889999998875
No 151
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=38.92 E-value=17 Score=26.18 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHcCCceEEEec
Q 039381 5 IFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+.+.++..++|.+|++|+.+..
T Consensus 44 ~~~~~~~~~~l~~G~~D~~~~~ 65 (280)
T 1zbm_A 44 IEDIETLNRKAFNAEYEVTAIS 65 (280)
T ss_dssp ECCHHHHHHHGGGTCCSEEEEE
T ss_pred eCCHHHHHHHHHcCCCCEEEEC
Confidence 4577888899999999998874
No 152
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=38.30 E-value=56 Score=22.52 Aligned_cols=79 Identities=8% Similarity=0.038 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCeee--CCCC-CcceeEEEEeCCChhHHHHHHHHHHHhhcCcHHH
Q 039381 5 IFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFTT--GPTY-SVGGFGFAFPKDSAYLADFSQAILQLSEEGKLRE 81 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~~--~~~~-~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~~ 81 (138)
.++..+..+++.+|++|+.+.-...+. ........+ .... ....|++++.|++ .+. -+.+.+..-+.+-++
T Consensus 149 ~~~~~~~~~~~~~g~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~-A~~Fi~fl~s~e~q~ 222 (237)
T 2hxw_A 149 VPNSGSARKLFAQDQADAWITWIDWSK---SNPDIGTAVAIEKDLVVYRTFNVIAKEGA--SKE-TQDFIAYLSSKEAKE 222 (237)
T ss_dssp CCCCTTC--CTTTTTCSEEEEEHHHHH---HSTTSSEEEECCTTTCCEEEEEEEECTTC--CHH-HHHHHHHTTSHHHHH
T ss_pred cCCHHHHHHHHHcCCeeEEEEechhhh---cCCCceEEEecCCceeEEeeeeEEEccCC--hHH-HHHHHHHHcCHHHHH
Confidence 445555666688888998776543321 111221122 3322 3456799999987 222 233444444555667
Q ss_pred HHHHhcCC
Q 039381 82 LEEAMLSP 89 (138)
Q Consensus 82 l~~kW~~~ 89 (138)
+..++.-.
T Consensus 223 ~~~~~g~~ 230 (237)
T 2hxw_A 223 IFKKYGWR 230 (237)
T ss_dssp HHHHTTCB
T ss_pred HHHHhCCC
Confidence 77766443
No 153
>1dpe_A Dipeptide-binding protein; peptide transport, periplasmic, chemotaxis binding proteins for active transport; 2.00A {Escherichia coli K12} SCOP: c.94.1.1 PDB: 1dpp_A
Probab=37.37 E-value=16 Score=29.17 Aligned_cols=23 Identities=9% Similarity=-0.081 Sum_probs=19.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEE
Q 039381 2 IEPIFSENRHRQALTSGEIAAAF 24 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i 24 (138)
++.+++....+++|++|++|.+.
T Consensus 216 ~~~~~d~~~~~~al~~GeiD~~~ 238 (507)
T 1dpe_A 216 FSITPDASVRYAKLQKNECQVMP 238 (507)
T ss_dssp EEECCCHHHHHHHHHTTSCSBCS
T ss_pred EEEecChHHHHHHHHcCCCCEec
Confidence 45678888999999999999764
No 154
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=36.84 E-value=25 Score=27.06 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=37.0
Q ss_pred eeecCCHHHHHHHHHcCCceEEEe--c----HHHHHHH--HHhcCCCee-eCCCCCcceeEEEEeCC
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFL--E----VPYVKLF--LAKNCKNFT-TGPTYSVGGFGFAFPKD 59 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~--d----~~~l~~~--~~~~~~~~~-~~~~~~~~~~g~a~~Kg 59 (138)
++.+++.++++.+|.+|++|..|. + ..+...+ +.+.. .+. +++.+-.....+..++|
T Consensus 34 ~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~-~l~IvgE~~l~I~h~Ll~~~g 99 (313)
T 3mwb_A 34 RIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQ-ELRIIREALVPITFVLVARPG 99 (313)
T ss_dssp EEEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHTTSSS-CCEEEEEEEEECCCEEEECTT
T ss_pred EEecCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHHhhCCC-CeEEEEEEEEeeeEEEEcCCC
Confidence 468899999999999999996664 2 2222111 12222 367 77766666666666665
No 155
>3o9p_A Periplasmic murein peptide-binding protein; oligopeptide binding proteins, murein tripeptide, periplasmi protein; HET: MHI; 2.07A {Escherichia coli} SCOP: c.94.1.0
Probab=36.76 E-value=25 Score=28.14 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.2
Q ss_pred eeecCCHHHHHHHHHcCCceEE
Q 039381 2 IEPIFSENRHRQALTSGEIAAA 23 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~ 23 (138)
++.+++.+..+++|++|++|.+
T Consensus 226 ~~~~~d~~~~~~al~~GevD~~ 247 (519)
T 3o9p_A 226 FLPINQESAATKRYLAGDIDIT 247 (519)
T ss_dssp EEECCCHHHHHHHHHHTSCSBC
T ss_pred EEEcCCchHHHHHHHcCCCcee
Confidence 4567888999999999999987
No 156
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=36.49 E-value=47 Score=22.28 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCeeeCCCCCcceeEEEEeCCChhHH
Q 039381 6 FSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFTTGPTYSVGGFGFAFPKDSAYLA 64 (138)
Q Consensus 6 ~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~~~~~~~~~~~g~a~~Kgspl~~ 64 (138)
.+..+..++|.+|++|..+...+. ...+ +. ...+..+.+.++++++.|+..
T Consensus 41 ~~~~~~~~~l~~g~~Dl~i~~~~~------~~~~-l~-~~~l~~~~~~~v~~~~hpla~ 91 (219)
T 1i6a_A 41 AQTHQLLAQLDSGKLDAVILALVK------ESEA-FI-EVPLFDEPMLLAIYEDHPWAN 91 (219)
T ss_dssp CCHHHHHHHHHHTSCSEEEEECCG------GGTT-SE-EEEEEEEEEEEEEETTSGGGG
T ss_pred CChHHHHHHHHcCCeeEEEecCCC------CCCC-cc-eeeeecccEEEEEcCCCcccc
Confidence 456788899999999988864322 1111 33 113456788999999998653
No 157
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=35.70 E-value=47 Score=24.61 Aligned_cols=75 Identities=9% Similarity=-0.032 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCceEEEecHHHHHHHHHhcC--CCeeeCCCCCcceeEEEEeCCC---hhHHHHHHHHHHHhhcCcHHHH
Q 039381 8 ENRHRQALTSGEIAAAFLEVPYVKLFLAKNC--KNFTTGPTYSVGGFGFAFPKDS---AYLADFSQAILQLSEEGKLREL 82 (138)
Q Consensus 8 ~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~--~~~~~~~~~~~~~~g~a~~Kgs---pl~~~in~~l~~l~~~G~~~~l 82 (138)
.+++..+|..|++||++....++... .-++ +.+.....-....-.|++++++ |..+.+-++++ .+..-+-|
T Consensus 158 aaql~~al~dg~vDaavin~n~a~~a-gl~p~~dal~~E~~~~~y~n~i~vr~~~~~~~~~k~lv~~~~---s~~v~~~i 233 (246)
T 4ef1_A 158 PAIMTTLYDNEEGAAVLINSNFAVDQ-GLNPKKDAIALEKESSPYANIIAVRKEDENNENVKKLVKVLR---SKEVQDWI 233 (246)
T ss_dssp GGGHHHHHHTTCSSEEEECHHHHHHT-TCCHHHHCSEECSCCGGGCEEEEEEGGGTTCHHHHHHHHHHH---SHHHHHHH
T ss_pred HHHHHHHhccccccEEEEechHHHHc-CCCCccCceEEcCCCCCeEEEEEEeccccCCHHHHHHHHHHc---CHHHHHHH
Confidence 46788899999999998875544321 0011 1122222212223467888763 45555544443 33333344
Q ss_pred HHHh
Q 039381 83 EEAM 86 (138)
Q Consensus 83 ~~kW 86 (138)
.++|
T Consensus 234 ~~~~ 237 (246)
T 4ef1_A 234 TKKW 237 (246)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 4444
No 158
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=35.34 E-value=50 Score=24.65 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=17.1
Q ss_pred cCCHHHHHHHHHcCCceEEE
Q 039381 5 IFSENRHRQALTSGEIAAAF 24 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i 24 (138)
+.+..-++++|.+|++|++.
T Consensus 48 lg~~~~~~~al~~G~iDv~~ 67 (282)
T 3o66_A 48 LGSSTIQHNALINGDANISG 67 (282)
T ss_dssp ESSHHHHHHHHHHTSCSEEE
T ss_pred CCCcHHHHHHHHcCCCCEee
Confidence 44666789999999999999
No 159
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=35.16 E-value=98 Score=20.53 Aligned_cols=70 Identities=16% Similarity=-0.033 Sum_probs=41.2
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQL 73 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l 73 (138)
...++...+...+.+|.--+++-+.....+.....-. .. +........+.++.+++.+....+...+..+
T Consensus 140 ~~~~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 210 (232)
T 3ho7_A 140 YSGGSMEAFMRLVESGQGITFIPQLTVEQLSPSQKEL-VRPFGMPRPVREVRLAVRQDYSRRKLREQLIGLL 210 (232)
T ss_dssp EESCCHHHHHHHHHTTCCEEEEEGGGGGGSCHHHHTT-EECBCSSEEEEEEEEEEETTCSCHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHcCCcEEEecHHHhhhhcccCceE-EEEccCCCceEEEEEEEeCCCccCHHHHHHHHHH
Confidence 4568888899999999888887665443222222111 22 4433345578889998865444444433333
No 160
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=35.07 E-value=32 Score=24.54 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=20.2
Q ss_pred CHHHHHHHHHcCCceEEEec-HHHHH
Q 039381 7 SENRHRQALTSGEIAAAFLE-VPYVK 31 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d-~~~l~ 31 (138)
..++..++|.+|++||.+.- .|.+.
T Consensus 125 ~~~~~~~al~~G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 125 RYDRILPMVAQGEVEAGLIIHESRFT 150 (272)
T ss_dssp CGGGHHHHHHTTSSSEEEECTTHHHH
T ss_pred ChHHHHHHHHCCCCCEEEEecchhhh
Confidence 45688999999999999874 66665
No 161
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=33.77 E-value=27 Score=26.44 Aligned_cols=63 Identities=16% Similarity=-0.033 Sum_probs=36.2
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHH-HHhcCCCee-eCCCCCcceeEEEEeCC-----Ch-hHHHHHHHHH
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLF-LAKNCKNFT-TGPTYSVGGFGFAFPKD-----SA-YLADFSQAIL 71 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~-~~~~~~~~~-~~~~~~~~~~g~a~~Kg-----sp-l~~~in~~l~ 71 (138)
..+|.+++|++|.||+.....+.+... ..+....+. .+.. ...+.+++.+. ++ .++.|..+..
T Consensus 184 ~~~Evy~ALq~G~VDg~~~p~~~~~~~~~~ev~ky~~~~~~~--~~~~~~~~n~~~~~~L~~e~q~~i~~a~~ 254 (327)
T 2hpg_A 184 NFGEIYTAVQTRAVDGAELTYANVYNGGLYEVLKYMSETGHF--LLINFEIVSADWFNSLPKEYQKIIEEEMD 254 (327)
T ss_dssp CGGGHHHHHHTTSCSEEEECHHHHHHTTGGGTCCEEEEEEEE--EEEEEEEEEHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCeeEEECCHHHHHHcChhhhccEEEecCcc--hhceEEEEeHHHHhcCCHHHHHHHHHHHH
Confidence 457899999999999999875543211 111123233 3322 24567777775 22 4555555444
No 162
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=31.75 E-value=1.5e+02 Score=21.54 Aligned_cols=67 Identities=10% Similarity=-0.005 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-e-CCC-CCcceeEEEEeCCChhHHHHHHHHHHHhhc
Q 039381 9 NRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-T-GPT-YSVGGFGFAFPKDSAYLADFSQAILQLSEE 76 (138)
Q Consensus 9 ~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~-~~~-~~~~~~g~a~~Kgspl~~~in~~l~~l~~~ 76 (138)
++..+++.+|++..++.-...+....+...+ +. + +.. -.....+++++++++-.+.--+.|.-|...
T Consensus 192 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~ 261 (330)
T 4eqb_A 192 DEMKGYMIQNNVAIGVTFSGEASQMLEKNEN-LRYVVPTEASNLWFDNMVIPKTVKNQDSAYAFINFMLKP 261 (330)
T ss_dssp TTHHHHHHTTCCSEEEEEHHHHHHHHHHCTT-EEEECCTTCEEEEEEEEBCBTTCSCHHHHHHHHHHHHSH
T ss_pred HHHHHHHhcCCEEEEEechHHHHHHHhhCCC-eEEEeCCCccceEEEEEEEECCCCCHHHHHHHHHHhcCH
Confidence 5678899999999988754444444444433 55 3 211 112335789999987666555555555443
No 163
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=31.42 E-value=38 Score=20.63 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=21.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+..+.+..+++..+.+.+.|+++.|
T Consensus 30 v~~~~~~~~a~~~l~~~~~dlii~D 54 (127)
T 3i42_A 30 ADYVMSGTDALHAMSTRGYDAVFID 54 (127)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEE
T ss_pred EEEECCHHHHHHHHHhcCCCEEEEe
Confidence 4567888999999999999999987
No 164
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=30.84 E-value=39 Score=24.50 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=20.0
Q ss_pred ecCCHHHHHHHHHcCCceEEEec
Q 039381 4 PIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
.|+++++++++|++|+.-.++.|
T Consensus 3 ~~~~ie~Ai~~lr~G~~Viv~Dd 25 (206)
T 3mio_A 3 RLDSVERAVADIAAGKAVIVIDD 25 (206)
T ss_dssp CCCCHHHHHHHHHTTCCEEEESS
T ss_pred CchhHHHHHHHHHCCCeEEEEeC
Confidence 58899999999999998777765
No 165
>4gl8_A Oligopeptide ABC transporter oppaiv; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Borrelia burgdorferi B31}
Probab=30.61 E-value=30 Score=27.67 Aligned_cols=24 Identities=13% Similarity=-0.027 Sum_probs=19.7
Q ss_pred eecCCHHHHHHHHHcCCceEEEec
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+.+++....++++++|++|++...
T Consensus 242 ~~~~d~~~~~~~l~~G~~D~~~~~ 265 (529)
T 4gl8_A 242 FVTDNSITAYNMYLNDELDAIFKN 265 (529)
T ss_dssp ECCSCHHHHHHHHHTTSCSEEESC
T ss_pred EEeecHHHHHHHHhCCCceeeccC
Confidence 456778889999999999987654
No 166
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=30.51 E-value=49 Score=20.48 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=21.8
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+..+.+..+++..+.+...|+++.|
T Consensus 34 v~~~~~~~~a~~~l~~~~~dlii~d 58 (142)
T 3cg4_A 34 IISADSGGQCIDLLKKGFSGVVLLD 58 (142)
T ss_dssp EEEESSHHHHHHHHHTCCCEEEEEE
T ss_pred EEEeCCHHHHHHHHHhcCCCEEEEe
Confidence 4567888999999999999999986
No 167
>3zs6_A Periplasmic oligopeptide-binding protein; peptide binding protein, ABC transport system; HET: GOL; 2.10A {Burkholderia pseudomallei}
Probab=30.29 E-value=21 Score=28.58 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.2
Q ss_pred eeecCCHHHHHHHHHcCCceEE
Q 039381 2 IEPIFSENRHRQALTSGEIAAA 23 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~ 23 (138)
++.+++.+..+++|++|++|.+
T Consensus 213 ~~~~~d~~~~~~al~~GevD~~ 234 (506)
T 3zs6_A 213 YLPIENDETALRMYQAGQIDYT 234 (506)
T ss_dssp EEECCCHHHHHHHHHTTSCSBC
T ss_pred EEEecCchHHHHHHHcCCCcee
Confidence 4567888999999999999987
No 168
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=30.21 E-value=42 Score=24.31 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=19.9
Q ss_pred ecCCHHHHHHHHHcCCceEEEec
Q 039381 4 PIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
.|+++++++++|++|+.-.++.|
T Consensus 4 ~~~~ie~Ai~~lr~G~~Viv~Dd 26 (204)
T 1tks_A 4 IFTPIEEALEAYKNGEFLIVMDD 26 (204)
T ss_dssp CSCCHHHHHHHHHTTCCEEEESS
T ss_pred chhhHHHHHHHHHCCCeEEEEeC
Confidence 47899999999999998777765
No 169
>2grv_A LPQW; substrate-binding protein scaffold, biosynthetic protein; 2.40A {Mycobacterium smegmatis str}
Probab=30.00 E-value=36 Score=28.21 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=20.1
Q ss_pred eeecCCHHHHHHHHHcCCceEEEe
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFL 25 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~ 25 (138)
++.+++....+++|++|++|.+..
T Consensus 252 ~~~i~d~~~~~~al~~GevD~~~~ 275 (621)
T 2grv_A 252 FRRGGAPAALADSIRNGDTQVAQV 275 (621)
T ss_dssp EEECCSHHHHHHHHHHTSCCEEEE
T ss_pred EEeCCCHHHHHHHHHcCCceEEec
Confidence 456788889999999999998754
No 170
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=29.99 E-value=47 Score=20.15 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=22.0
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV 27 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~ 27 (138)
+..+.+..++++.+.+.+.|+++.|.
T Consensus 29 v~~~~~~~~al~~~~~~~~dlii~D~ 54 (120)
T 3f6p_A 29 VHCAHDGNEAVEMVEELQPDLILLDI 54 (120)
T ss_dssp EEEESSHHHHHHHHHTTCCSEEEEET
T ss_pred EEEeCCHHHHHHHHhhCCCCEEEEeC
Confidence 45678889999999999999999873
No 171
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=29.94 E-value=1.2e+02 Score=19.88 Aligned_cols=56 Identities=13% Similarity=-0.091 Sum_probs=35.7
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee---eCCCCCcceeEEEEeCCCh
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT---TGPTYSVGGFGFAFPKDSA 61 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~---~~~~~~~~~~g~a~~Kgsp 61 (138)
...++...+...+.+|.--+++-+.... ...... . +. +........+.++.+++.+
T Consensus 135 ~~~~~~~~~~~~v~~g~gi~~~p~~~~~-~~~~~~-~-l~~~~~~~~~~~~~~~l~~~~~~~ 193 (222)
T 4ab5_A 135 RHSELTIAIIQLVASRRGIAALPYWTVM-PYLEKG-Y-VVHRQITADGLQSKLYAAIRTEDT 193 (222)
T ss_dssp EECSCHHHHHHHHHTTSCBEEEEHHHHH-HHHHTT-S-CEEEEESTTCCEEEEEEEEEGGGT
T ss_pred EecCCHHHHHHHHHcCCeEEEcchHHhH-HHhhcC-c-EEEEecCCCccceEEEEEEeCCcc
Confidence 4567888899999999887777664433 333322 2 33 4443445678888888744
No 172
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=29.62 E-value=44 Score=24.72 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=19.6
Q ss_pred ecCCHHHHHHHHHcCCceEEEec
Q 039381 4 PIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
.|+++++++++|++|+.-.++.|
T Consensus 11 ~~~~ie~Ai~alr~G~~Viv~Dd 33 (233)
T 1k4i_A 11 NFDAIPDVIQAFKNGEFVVVLDD 33 (233)
T ss_dssp -CCCHHHHHHHHHTTCCEEEECC
T ss_pred chhHHHHHHHHHHCCCeEEEEeC
Confidence 47899999999999998777765
No 173
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=29.13 E-value=1.7e+02 Score=21.51 Aligned_cols=83 Identities=7% Similarity=-0.032 Sum_probs=45.9
Q ss_pred eecCCHHHHHHHHHcCCceEEEe-cHHHHHHHHHhcCCCee-e-CCC-CCcceeEEEEeCCChhHHHHHHHHHHHhhcCc
Q 039381 3 EPIFSENRHRQALTSGEIAAAFL-EVPYVKLFLAKNCKNFT-T-GPT-YSVGGFGFAFPKDSAYLADFSQAILQLSEEGK 78 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~-d~~~l~~~~~~~~~~~~-~-~~~-~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~ 78 (138)
..+.+..+..+++.+|+++..+. .........+... .+. + +.. -.....+++++|+++-.+.--+.|.-|... +
T Consensus 211 ~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~-~~~~~~P~~g~~~~~~~~~I~k~s~~~eaA~~Fi~fl~s~-e 288 (355)
T 3c9h_A 211 KVYSTSSAILERVSDGRFVLGYNILGSYAADWASRHP-DVGIVLPKDYTVVMSRIGLVPEAAANPELGRRYLEFFMSK-E 288 (355)
T ss_dssp EEESCHHHHHHHHHTTSCSEEEEEEHHHHHHHHHHCT-TEEEECCSSCEEEECCEEEEETTBSCHHHHHHHHHHHHSH-H
T ss_pred eecCCcHHHHHHHHCCCeEEEEecchhHHHHHHhcCC-CeeEEecCCCceeeeeEEEEECCCCCHHHHHHHHHHHcCH-H
Confidence 34567788899999999998874 3333222222233 355 3 211 112346789999987555544444444432 3
Q ss_pred HHHHHHHhc
Q 039381 79 LRELEEAML 87 (138)
Q Consensus 79 ~~~l~~kW~ 87 (138)
.++...+..
T Consensus 289 ~q~~~~~~~ 297 (355)
T 3c9h_A 289 GQTIMARQL 297 (355)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 344444443
No 174
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=29.11 E-value=45 Score=20.42 Aligned_cols=26 Identities=8% Similarity=-0.105 Sum_probs=22.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV 27 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~ 27 (138)
+..+.+..+++..+.+.+.|+++.|.
T Consensus 30 v~~~~~~~~a~~~l~~~~~dlvi~d~ 55 (133)
T 3nhm_A 30 CTTAADGASGLQQALAHPPDVLISDV 55 (133)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEECS
T ss_pred EEEECCHHHHHHHHhcCCCCEEEEeC
Confidence 45678899999999999999999873
No 175
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=28.52 E-value=70 Score=23.02 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=32.8
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCeeeCCCCCcceeEEEEeCCChhHH
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFTTGPTYSVGGFGFAFPKDSAYLA 64 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~~~~~~~~~~~g~a~~Kgspl~~ 64 (138)
+..+..++|.+|++|..+...+. ..+ .+. ...+..+.+.++++++.|+..
T Consensus 127 ~~~~~~~~l~~g~~Dlai~~~~~------~~~-~l~-~~~L~~~~~~~v~~~~hpla~ 176 (312)
T 2h9b_A 127 GTKAQTEALKEGRIDAGFGRLKI------SDP-AIK-HSLLRNERLMVAVHASHPLNQ 176 (312)
T ss_dssp CHHHHHHHHHTTSCSEEEESSCC------CCT-TEE-EEEEEEEEEEEEEETTSGGGG
T ss_pred CHHHHHHHHHcCCCCEEEEeCCC------CCC-Cce-EEEeecceEEEEEcCCCcccc
Confidence 45778889999999998875331 111 133 123456778888999888653
No 176
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=28.06 E-value=40 Score=24.53 Aligned_cols=55 Identities=11% Similarity=0.052 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChh
Q 039381 5 IFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAY 62 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl 62 (138)
..+..+++++|.+|++|..+.+.+.-. +..+..-. ...++..+...+++++++|+
T Consensus 38 ~~gS~~gi~~l~~g~~Dig~~~~~~~~---~~~~~~~~l~~~~ia~d~lvvvv~~~~~~ 93 (265)
T 4exl_A 38 GGGSGTGLSQVQSGAVDIGNSDVFAEE---KDGIDASALVDHKVAVAGLALIVNKEVDV 93 (265)
T ss_dssp EECHHHHHHHHHTTSSSEEEESSCGGG---STTCCGGGEECCEEEEEEEEEEECTTCCC
T ss_pred eCCcHHHHHHHHcCCCccccccCCcch---hhcccccCceEeeEEEEEEEEEECCCCcc
Confidence 346778999999999999888743211 11121112 44456677889999998774
No 177
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=27.80 E-value=47 Score=20.74 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=21.8
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+....+..+++..+.+.+.|+++.|
T Consensus 31 v~~~~~~~~al~~~~~~~~dlvl~D 55 (136)
T 3t6k_A 31 VRRAASGEEALQQIYKNLPDALICD 55 (136)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEE
T ss_pred EEEeCCHHHHHHHHHhCCCCEEEEe
Confidence 4567889999999999999999987
No 178
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=26.40 E-value=64 Score=19.92 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=22.0
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+..+.+..+++..+.+.+.|+++.|
T Consensus 33 v~~~~~~~~a~~~l~~~~~dlvi~d 57 (140)
T 3grc_A 33 SDMVHSAAQALEQVARRPYAAMTVD 57 (140)
T ss_dssp EEEECSHHHHHHHHHHSCCSEEEEC
T ss_pred EEEECCHHHHHHHHHhCCCCEEEEe
Confidence 4567889999999999999999987
No 179
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=26.22 E-value=39 Score=24.87 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=18.5
Q ss_pred cCCHHHHHHHHHcCCceEEEec
Q 039381 5 IFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i~d 26 (138)
++++++++++|++|+.-.++.|
T Consensus 1 ~~~ie~Ai~alr~G~~Viv~Dd 22 (227)
T 1snn_A 1 MNNVEKAIEALKKGEIILVYDS 22 (227)
T ss_dssp -CHHHHHHHHHHTTCCEEEECC
T ss_pred CchHHHHHHHHHCCCeEEEEeC
Confidence 4678999999999998887776
No 180
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=26.18 E-value=64 Score=22.88 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=20.3
Q ss_pred ecCCHHHHHHHHHcCCceEEEecH
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEV 27 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~ 27 (138)
.+.+.++..++|.+|++|+.+...
T Consensus 35 ~~~~~~~~~~al~~G~~D~~~~~~ 58 (272)
T 2czl_A 35 VLEDVETLNRWALEGRLPLTKLSY 58 (272)
T ss_dssp EECCHHHHHHHHHTTCCSEEEEEH
T ss_pred ecCCHHHHHHHHHcCCCCEEEecH
Confidence 467888889999999999988753
No 181
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=26.13 E-value=35 Score=22.68 Aligned_cols=21 Identities=10% Similarity=0.028 Sum_probs=17.7
Q ss_pred cCCHHHHHHHHHcCCceEEEe
Q 039381 5 IFSENRHRQALTSGEIAAAFL 25 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i~ 25 (138)
+++.+++-++|++|++++++.
T Consensus 41 ~~s~~ea~~~l~~g~~~~~l~ 61 (156)
T 3cni_A 41 GSDLKEAEEAVKKEKAPAIIV 61 (156)
T ss_dssp ESCHHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHHcCCeeEEEE
Confidence 368888999999999998776
No 182
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=25.95 E-value=48 Score=20.22 Aligned_cols=25 Identities=8% Similarity=-0.104 Sum_probs=21.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+..+.+..++++.+.+.+.|+++.|
T Consensus 29 v~~~~~~~~al~~l~~~~~dlvllD 53 (122)
T 3gl9_A 29 VIEAENGQIALEKLSEFTPDLIVLX 53 (122)
T ss_dssp EEEESSHHHHHHHHTTBCCSEEEEC
T ss_pred EEEeCCHHHHHHHHHhcCCCEEEEe
Confidence 4567888999999999999999987
No 183
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=25.94 E-value=57 Score=20.06 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=22.0
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV 27 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~ 27 (138)
+..+.+..+++..+...+.|+++.|.
T Consensus 30 v~~~~~~~~a~~~l~~~~~dlvi~d~ 55 (140)
T 2qr3_A 30 VITLSSPVSLSTVLREENPEVVLLDM 55 (140)
T ss_dssp EEEECCHHHHHHHHHHSCEEEEEEET
T ss_pred EEEeCCHHHHHHHHHcCCCCEEEEeC
Confidence 45678889999999999999999873
No 184
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=25.27 E-value=53 Score=20.97 Aligned_cols=26 Identities=12% Similarity=0.026 Sum_probs=22.3
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV 27 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~ 27 (138)
+..+.+..+++..+.+.+.|+++.|.
T Consensus 34 v~~~~~~~~al~~l~~~~~dlii~D~ 59 (154)
T 3gt7_A 34 TEHVRNGREAVRFLSLTRPDLIISDV 59 (154)
T ss_dssp EEEESSHHHHHHHHTTCCCSEEEEES
T ss_pred EEEeCCHHHHHHHHHhCCCCEEEEeC
Confidence 45678899999999999999999873
No 185
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=25.04 E-value=54 Score=20.71 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=22.2
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV 27 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~ 27 (138)
+..+.+..+++..+.+.+.|+++.|.
T Consensus 49 v~~~~~~~~al~~l~~~~~dlii~D~ 74 (150)
T 4e7p_A 49 VLQAKNGQEAIQLLEKESVDIAILDV 74 (150)
T ss_dssp EEEESSHHHHHHHHTTSCCSEEEECS
T ss_pred EEEECCHHHHHHHhhccCCCEEEEeC
Confidence 45678899999999999999999873
No 186
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=25.00 E-value=58 Score=19.82 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=21.2
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+..+.+..+++..+.+.+.|+++.|
T Consensus 33 v~~~~~~~~a~~~l~~~~~dlii~d 57 (132)
T 3lte_A 33 VEIAHNGFDAGIKLSTFEPAIMTLD 57 (132)
T ss_dssp EEEESSHHHHHHHHHHTCCSEEEEE
T ss_pred EEEeCCHHHHHHHHHhcCCCEEEEe
Confidence 4567788899999999999999887
No 187
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=25.00 E-value=59 Score=19.78 Aligned_cols=26 Identities=4% Similarity=-0.185 Sum_probs=21.7
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV 27 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~ 27 (138)
+..+.+..+++..+.+.+.|+++.|.
T Consensus 34 v~~~~~~~~a~~~l~~~~~dlvi~d~ 59 (130)
T 3eod_A 34 TVLAADGVDALELLGGFTPDLMICDI 59 (130)
T ss_dssp EEEESCHHHHHHHHTTCCCSEEEECC
T ss_pred EEEeCCHHHHHHHHhcCCCCEEEEec
Confidence 34577889999999999999999873
No 188
>1jet_A OPPA, oligo-peptide binding protein; complex (peptide transport/peptide), peptide transport; 1.20A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A 1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A 1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A 1b7h_A ...
Probab=24.74 E-value=30 Score=27.64 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=18.7
Q ss_pred eeecCCHHHHHHHHHcCCceEE
Q 039381 2 IEPIFSENRHRQALTSGEIAAA 23 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~ 23 (138)
++.+++.+..+++|++|++|++
T Consensus 223 ~~~i~d~~~~~~al~~GeiD~~ 244 (517)
T 1jet_A 223 YLPISSEVTDVNRYRSGEIDMT 244 (517)
T ss_dssp EECCCCHHHHHHHHHTTSCSBC
T ss_pred EEEccChhHHHHHHHcCCccee
Confidence 4566788889999999999986
No 189
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=24.62 E-value=68 Score=19.93 Aligned_cols=26 Identities=8% Similarity=0.134 Sum_probs=22.6
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV 27 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~ 27 (138)
+..+.+..+++..+...+.|+++.|.
T Consensus 34 v~~~~~~~~a~~~l~~~~~dlii~D~ 59 (144)
T 3kht_A 34 LEFVDNGAKALYQVQQAKYDLIILDI 59 (144)
T ss_dssp EEEESSHHHHHHHHTTCCCSEEEECT
T ss_pred EEEECCHHHHHHHhhcCCCCEEEEeC
Confidence 45678899999999999999999983
No 190
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=24.59 E-value=1.2e+02 Score=23.87 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=35.6
Q ss_pred eeecCCHHHHHHHHHcCC----ceEEEecHHHHHHHHHh------cCCCee-eCCCCCcceeEEEEeCC
Q 039381 2 IEPIFSENRHRQALTSGE----IAAAFLEVPYVKLFLAK------NCKNFT-TGPTYSVGGFGFAFPKD 59 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~----vdA~i~d~~~l~~~~~~------~~~~~~-~~~~~~~~~~g~a~~Kg 59 (138)
++.+.+..+..++|.+|+ +|+.+.-.+.. +.... ....+. +... ...+.+|.++++
T Consensus 70 l~~~~s~~~~~~al~~G~~~~~~D~a~~~~~~~-~~~~~g~~~~~~g~~~~~v~~~-~~~g~~i~v~~~ 136 (429)
T 2i49_A 70 VSKQANWASARDNVTIGSQGGGIDGGQWQMPMP-HLITEGIITNGNKVPMYVLAQL-ITQGNGIAVAPM 136 (429)
T ss_dssp EEECSSHHHHHHHHHHTGGGTSCSEEEECTTHH-HHHHTTTTTTTCCCCEEEEEEC-CBCCEEEEECGG
T ss_pred EEEcCCHHHHHHHHHcCCCCCceeEEEeccHHH-HHHHcCccccCCCCCEEEEEEe-ccCCcEEEEecc
Confidence 467788999999999999 99988732322 22221 223355 4332 234678888876
No 191
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=24.53 E-value=57 Score=20.68 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=22.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV 27 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~ 27 (138)
+..+.+..+++..+...+.|+++.|.
T Consensus 41 v~~~~~~~~a~~~l~~~~~dlvi~D~ 66 (153)
T 3hv2_A 41 LHFARDATQALQLLASREVDLVISAA 66 (153)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEES
T ss_pred EEEECCHHHHHHHHHcCCCCEEEEeC
Confidence 45678899999999999999999873
No 192
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=24.53 E-value=68 Score=19.42 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=20.4
Q ss_pred eeecCCHHHHHHHHHcC-CceEEEec
Q 039381 2 IEPIFSENRHRQALTSG-EIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G-~vdA~i~d 26 (138)
+..+.+..+++..+.+. +.|+++.|
T Consensus 32 v~~~~~~~~a~~~l~~~~~~dlvi~d 57 (132)
T 2rdm_A 32 VTAVSSGAKAIEMLKSGAAIDGVVTD 57 (132)
T ss_dssp EEEESSHHHHHHHHHTTCCCCEEEEE
T ss_pred EEEECCHHHHHHHHHcCCCCCEEEEe
Confidence 45677888999999887 89998876
No 193
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=24.49 E-value=1.6e+02 Score=19.70 Aligned_cols=67 Identities=3% Similarity=-0.043 Sum_probs=38.4
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eC--CCCCcceeEEEEeCCC---hhHHHHHHHHHH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TG--PTYSVGGFGFAFPKDS---AYLADFSQAILQ 72 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~--~~~~~~~~g~a~~Kgs---pl~~~in~~l~~ 72 (138)
...++...+.+.+.+|.--+++-+.... ..... .. +. +. .......++++.+++. |..+.+-..|.+
T Consensus 145 ~~~~~~~~~~~~v~~g~giailp~~~~~-~~~~~-~~-l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 217 (241)
T 3oxn_A 145 LRAYHLEAALAIVDTLPIIITVPADLAY-LVAER-YD-LVVKPLPFQFTPFDYSMIWHARCEHSPAQEWLRSVVRE 217 (241)
T ss_dssp EECSSTHHHHHHC--CCCEEEEEHHHHH-HHHHH-TT-EEEECCSSCCCCCCEEEEEEGGGTTCHHHHHHHHHHHH
T ss_pred EECCcHHHHHHHHhCCCeEEEcHHHHHH-Hhccc-CC-ceEeCCCCCCCcccEEEEEcCcCCCCchhHHHHHHHHH
Confidence 3567888888999999888877664433 33332 22 55 43 3334556888888874 344444444443
No 194
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=24.03 E-value=60 Score=20.46 Aligned_cols=25 Identities=8% Similarity=0.157 Sum_probs=21.1
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+..+.+..+++..+...+.|+++.|
T Consensus 41 v~~~~~~~~al~~~~~~~~dlvl~D 65 (143)
T 3m6m_D 41 VLCVNGAEQVLDAMAEEDYDAVIVD 65 (143)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEE
T ss_pred EEEeCCHHHHHHHHhcCCCCEEEEe
Confidence 3457788899999999999999987
No 195
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=23.70 E-value=59 Score=19.99 Aligned_cols=26 Identities=0% Similarity=-0.089 Sum_probs=21.8
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV 27 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~ 27 (138)
+..+.+..+++..+.+...|+++.|.
T Consensus 34 v~~~~~~~~a~~~l~~~~~dlvi~d~ 59 (137)
T 3hdg_A 34 VWSAGDGEEGERLFGLHAPDVIITDI 59 (137)
T ss_dssp EEEESSHHHHHHHHHHHCCSEEEECS
T ss_pred EEEECCHHHHHHHHhccCCCEEEEeC
Confidence 45678889999999999999999873
No 196
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=23.45 E-value=1.7e+02 Score=21.08 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=14.7
Q ss_pred HHHHHHHHcCCceEEEecHHHH
Q 039381 9 NRHRQALTSGEIAAAFLEVPYV 30 (138)
Q Consensus 9 ~e~~~aL~~G~vdA~i~d~~~l 30 (138)
+++..+| +++||.+...+.+
T Consensus 156 ~~~~~al--~~VDaa~i~~~~a 175 (241)
T 1xs5_A 156 ALLPRVF--DQVDGAVINGNYA 175 (241)
T ss_dssp GGHHHHG--GGSSEEEECHHHH
T ss_pred HHHHHhh--hccCEEEECcHHH
Confidence 5566666 6899999877654
No 197
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=23.33 E-value=84 Score=19.25 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=22.3
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV 27 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~ 27 (138)
+....+..+++..+.+.+.|+++.|.
T Consensus 37 v~~~~~~~~a~~~l~~~~~dlii~d~ 62 (143)
T 3cnb_A 37 IKIAYNPFDAGDLLHTVKPDVVMLDL 62 (143)
T ss_dssp EEEECSHHHHHHHHHHTCCSEEEEET
T ss_pred EEEECCHHHHHHHHHhcCCCEEEEec
Confidence 55678899999999999999999873
No 198
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport, transport protein; 1.55A {Bacillus subtilis} SCOP: c.94.1.1
Probab=23.13 E-value=39 Score=27.02 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=19.2
Q ss_pred eeecCCHHHHHHHHHcCCceEEE
Q 039381 2 IEPIFSENRHRQALTSGEIAAAF 24 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i 24 (138)
++.+++.+..+++|++|++|.+-
T Consensus 219 ~~~i~d~~~~~~al~~GeiD~~~ 241 (520)
T 1xoc_A 219 YKVIPDANAAEAQLQAGDINFFN 241 (520)
T ss_dssp EEECSCHHHHHHHHHHTSCCBEE
T ss_pred EEEeCCHHHHHHHHHcCCCceee
Confidence 45677888999999999999853
No 199
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=23.09 E-value=1.9e+02 Score=21.08 Aligned_cols=77 Identities=9% Similarity=0.028 Sum_probs=42.3
Q ss_pred HHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-e-CCC-CCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHHHHHHH
Q 039381 9 NRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-T-GPT-YSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLRELEEA 85 (138)
Q Consensus 9 ~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~-~~~-~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~~l~~k 85 (138)
.+..+.+.+|++++.+.-............. +. + +.. -.....+++++|++|-.+.--+.|.-|.. -+.+....+
T Consensus 195 ~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~-~~~~~p~eG~~~~~~~~~I~k~a~n~e~A~~fi~flls-pe~q~~~~~ 272 (333)
T 4gl0_A 195 DEIKLLMADNEAGVAVTFSGEAAEMLSENED-LEYVIPKDGSNLWFDNMVIPKTAKNVDGAHKFINFMLK-PENAAINAE 272 (333)
T ss_dssp TTHHHHTSCC-CCEEEEEHHHHHHHHHHCTT-EEEECCSSCEEEEEEEEECBTTCSCHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred hhhhhhhhccchheehhhhHHHHHHHhhccc-cccccCCCCCccccceEEEEcCCCCHHHHHHHHHHhcC-HHHHHHHHH
Confidence 3456778899999888754544444444433 55 3 221 12334678999998766555555544443 333333334
Q ss_pred hc
Q 039381 86 ML 87 (138)
Q Consensus 86 W~ 87 (138)
+.
T Consensus 273 ~~ 274 (333)
T 4gl0_A 273 YV 274 (333)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 200
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=22.94 E-value=62 Score=20.02 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=22.1
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV 27 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~ 27 (138)
+..+.+..+++..+.+.+.|+++.|.
T Consensus 31 v~~~~~~~~a~~~l~~~~~dlvi~d~ 56 (142)
T 2qxy_A 31 VIWAKNEQEAFTFLRREKIDLVFVDV 56 (142)
T ss_dssp EEEESSHHHHHHHHTTSCCSEEEEEC
T ss_pred EEEECCHHHHHHHHhccCCCEEEEeC
Confidence 45678889999999999999999874
No 201
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=22.84 E-value=93 Score=22.51 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=32.7
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCeeeCCCCCcceeEEEEeCCChhHH
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFTTGPTYSVGGFGFAFPKDSAYLA 64 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~~~~~~~~~~~g~a~~Kgspl~~ 64 (138)
+..+..++|.+|++|..+...+. ....+. ...+..+.+.++++++.|+..
T Consensus 127 ~~~~~~~~l~~g~~Dlai~~~~~-------~~~~l~-~~~L~~~~~~~v~~~~hpl~~ 176 (313)
T 2h98_A 127 GTKDQINALKQGKIDLGFGRLKI-------TDPAIR-RIMLHKEQLKLAIHKHHHLNQ 176 (313)
T ss_dssp CHHHHHHHHHHTSCSEEEESSCC-------CCTTEE-EEEEEEEEEEEEEETTSGGGG
T ss_pred ChHHHHHHHHcCCCCEEEEeCCC-------CCCCee-EEEeeeCcEEEEEcCCCcccc
Confidence 45678889999999988875331 111133 123456778888999888653
No 202
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=22.76 E-value=36 Score=20.91 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhcCcH
Q 039381 63 LADFSQAILQLSEEGKL 79 (138)
Q Consensus 63 ~~~in~~l~~l~~~G~~ 79 (138)
++.||++|.+|++.|.+
T Consensus 48 KKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 48 KRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 67899999999999975
No 203
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=22.66 E-value=91 Score=18.76 Aligned_cols=25 Identities=4% Similarity=-0.012 Sum_probs=20.2
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+....+..+++..+...+.|.++.|
T Consensus 34 v~~~~~~~~a~~~~~~~~~dlvl~D 58 (129)
T 1p6q_A 34 ITAAGDGEQGMKIMAQNPHHLVISD 58 (129)
T ss_dssp EECCSSHHHHHHHHHTSCCSEEEEC
T ss_pred EEecCCHHHHHHHHHcCCCCEEEEe
Confidence 3456778888998988889999877
No 204
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=22.58 E-value=48 Score=24.71 Aligned_cols=24 Identities=8% Similarity=-0.065 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCceEEEecHHHHH
Q 039381 8 ENRHRQALTSGEIAAAFLEVPYVK 31 (138)
Q Consensus 8 ~~e~~~aL~~G~vdA~i~d~~~l~ 31 (138)
..+...+|.+|++||++.-.|...
T Consensus 145 ~~~~~~al~~G~vDa~~~~~p~~~ 168 (342)
T 4esw_A 145 GMNVAKYILEGTIDCGIGIECIQQ 168 (342)
T ss_dssp GGGHHHHHHHTSSSEEEEETTTHH
T ss_pred CHHHHHHHHcCCCCEEEEeccchH
Confidence 345678999999999987655443
No 205
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=22.33 E-value=70 Score=19.72 Aligned_cols=25 Identities=16% Similarity=0.132 Sum_probs=20.9
Q ss_pred eeecCCHHHHHHHHHc-----CCceEEEec
Q 039381 2 IEPIFSENRHRQALTS-----GEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~-----G~vdA~i~d 26 (138)
+..+.+..+++..+.+ ...|+++.|
T Consensus 38 v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D 67 (146)
T 3ilh_A 38 IQSVTSGNAAINKLNELYAAGRWPSIICID 67 (146)
T ss_dssp EEEESSHHHHHHHHHHHHTSSCCCSEEEEE
T ss_pred eeecCCHHHHHHHHHHhhccCCCCCEEEEc
Confidence 4567788999999988 889999987
No 206
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=22.23 E-value=73 Score=18.78 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=19.9
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+....+..+++..+.+.+.|.++.|
T Consensus 28 v~~~~~~~~a~~~~~~~~~dlvl~D 52 (116)
T 3a10_A 28 IDTAENGEEALKKFFSGNYDLVILD 52 (116)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEC
T ss_pred EEEeCCHHHHHHHHhcCCCCEEEEE
Confidence 3456778888888888889988876
No 207
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=22.02 E-value=55 Score=19.55 Aligned_cols=25 Identities=4% Similarity=0.060 Sum_probs=20.6
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+....+..+++..+.+...|+++.|
T Consensus 32 v~~~~~~~~a~~~~~~~~~dlvi~d 56 (127)
T 2gkg_A 32 VDETTDGKGSVEQIRRDRPDLVVLA 56 (127)
T ss_dssp EEEECCHHHHHHHHHHHCCSEEEEE
T ss_pred EEEecCHHHHHHHHHhcCCCEEEEe
Confidence 4567788899999988889998876
No 208
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=21.99 E-value=88 Score=17.71 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhcCcHHHHHHHhc
Q 039381 65 DFSQAILQLSEEGKLRELEEAML 87 (138)
Q Consensus 65 ~in~~l~~l~~~G~~~~l~~kW~ 87 (138)
.+...+..+--.|.++++.+||-
T Consensus 13 aleekvkalggggrieelkkkwe 35 (67)
T 1lq7_A 13 ALEEKVKALGGGGRIEELKKKWE 35 (67)
T ss_dssp HHHHHHHHSCCSSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHH
Confidence 34444555566789999999994
No 209
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=21.58 E-value=69 Score=20.22 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=21.6
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+..+.+..+++..+.+...|+++.|
T Consensus 34 v~~~~~~~~a~~~l~~~~~dlvi~d 58 (154)
T 2rjn_A 34 IITFTSPLDALEALKGTSVQLVISD 58 (154)
T ss_dssp EEEESCHHHHHHHHTTSCCSEEEEE
T ss_pred EEEeCCHHHHHHHHhcCCCCEEEEe
Confidence 4567888999999999999999986
No 210
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=21.58 E-value=53 Score=20.37 Aligned_cols=26 Identities=8% Similarity=0.078 Sum_probs=22.5
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV 27 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~ 27 (138)
+..+.+..+++..+.+.+.|+++.|.
T Consensus 29 v~~~~~~~~a~~~~~~~~~dlvi~D~ 54 (140)
T 3n53_A 29 VIESKNEKEALEQIDHHHPDLVILDM 54 (140)
T ss_dssp EEEESSHHHHHHHHHHHCCSEEEEET
T ss_pred EEEeCCHHHHHHHHhcCCCCEEEEeC
Confidence 45678899999999999999999884
No 211
>3drf_A Oligopeptide-binding protein OPPA; oligo-peptide binding, voluminous binding cavity, venus FLY- trap, peptide binding protein; 1.30A {Lactococcus lactis} PDB: 3drg_A 3drh_A 3dri_A 3drj_A 3drk_A 3fto_A 3rya_A 3ryb_A
Probab=21.11 E-value=84 Score=25.62 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=15.7
Q ss_pred eecCCHHHHHHHHHcCCceEEE
Q 039381 3 EPIFSENRHRQALTSGEIAAAF 24 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i 24 (138)
+.+++. ..+++|++|++|.+.
T Consensus 256 ~~i~d~-~~~~al~~GevD~~~ 276 (590)
T 3drf_A 256 EVVSTA-KSVAALSSSKYDIIN 276 (590)
T ss_dssp EEECTT-THHHHHHTTSCSEEE
T ss_pred EEeCCH-HHHHHHHCCCCceec
Confidence 445554 468999999999875
No 212
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=21.10 E-value=55 Score=20.45 Aligned_cols=25 Identities=8% Similarity=-0.177 Sum_probs=21.7
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+..+.+..+++..+...+.|+++.|
T Consensus 35 v~~~~~~~~a~~~l~~~~~dlii~d 59 (147)
T 2zay_A 35 IIQCGNAIEAVPVAVKTHPHLIITE 59 (147)
T ss_dssp EEEESSHHHHHHHHHHHCCSEEEEE
T ss_pred EEEeCCHHHHHHHHHcCCCCEEEEc
Confidence 4567889999999999999999987
No 213
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=20.71 E-value=1e+02 Score=18.51 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=20.7
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+....+..+++..+...+.|.++.|
T Consensus 32 v~~~~~~~~a~~~~~~~~~dlvi~D 56 (128)
T 1jbe_A 32 VEEAEDGVDALNKLQAGGYGFVISD 56 (128)
T ss_dssp EEEESSHHHHHHHHTTCCCCEEEEE
T ss_pred EEeeCCHHHHHHHHHhcCCCEEEEe
Confidence 4456788889999988899999876
No 214
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=20.64 E-value=1e+02 Score=18.72 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=20.9
Q ss_pred eeecCCHHHHHHHHHcCC-ceEEEecH
Q 039381 2 IEPIFSENRHRQALTSGE-IAAAFLEV 27 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~-vdA~i~d~ 27 (138)
+..+.+..+++..+.... .|+++.|.
T Consensus 34 v~~~~~~~~a~~~~~~~~~~dlvi~D~ 60 (136)
T 3hdv_A 34 AVGADGAEEARLYLHYQKRIGLMITDL 60 (136)
T ss_dssp EEEESSHHHHHHHHHHCTTEEEEEECS
T ss_pred EEEeCCHHHHHHHHHhCCCCcEEEEec
Confidence 456788888988888777 99999873
No 215
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=20.60 E-value=97 Score=19.24 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=19.1
Q ss_pred ecCCHHHHHHHHHcC-CceEEEecH
Q 039381 4 PIFSENRHRQALTSG-EIAAAFLEV 27 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G-~vdA~i~d~ 27 (138)
.+.+..+++..+... ..|+++.|.
T Consensus 44 ~~~~~~~al~~l~~~~~~dlvilD~ 68 (145)
T 3kyj_B 44 QAANGQEALDKLAAQPNVDLILLDI 68 (145)
T ss_dssp EESSHHHHHHHHHHCTTCCEEEECT
T ss_pred EECCHHHHHHHHhcCCCCCEEEEeC
Confidence 577888888888877 788888873
No 216
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=20.56 E-value=1e+02 Score=19.00 Aligned_cols=25 Identities=4% Similarity=-0.038 Sum_probs=21.2
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+....+..+++..+.+...|.++.|
T Consensus 27 v~~~~~~~~a~~~~~~~~~dlvl~D 51 (139)
T 2jk1_A 27 VLTAQGAEAAIAILEEEWVQVIICD 51 (139)
T ss_dssp EEEESSHHHHHHHHHHSCEEEEEEE
T ss_pred EEEcCCHHHHHHHHhcCCCCEEEEe
Confidence 4567788999999999999999986
No 217
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=20.51 E-value=64 Score=24.92 Aligned_cols=55 Identities=7% Similarity=-0.011 Sum_probs=34.9
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec------HH---HHHHHHHhcCCCee-eCCCCCcceeEEEEeCC
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE------VP---YVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKD 59 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d------~~---~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kg 59 (138)
++.+++.++++.+|.+|+ |..|.. .. ++..+ .+..+ +. +++.+-.....+...+|
T Consensus 40 ~~p~~s~~~vf~aV~~g~-d~gVVPIENS~eG~V~~tlDlL-~~~~~-l~I~gE~~l~I~h~Ll~~~g 104 (329)
T 3luy_A 40 LMPMDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDAL-IDAKD-LVGFARVGVNVEFDAYVAQG 104 (329)
T ss_dssp EEEESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHH-HTCSS-CEEEEEEEEECCCEEEEETT
T ss_pred EEeCCCHHHHHHHHHcCC-CEEEEEEcccCCCchHHHHHHh-hccCC-cEEEEEEEEEeeeeeecCCC
Confidence 467899999999999999 876652 11 22222 22223 66 77766555566655555
No 218
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=20.13 E-value=86 Score=18.57 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=20.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+....+..+++..+.....|.++.|
T Consensus 27 v~~~~~~~~a~~~~~~~~~dlil~D 51 (121)
T 2pl1_A 27 VDDAEDAKEADYYLNEHIPDIAIVD 51 (121)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEC
T ss_pred EEEeCCHHHHHHHHhccCCCEEEEe
Confidence 3456788888888988899999876
No 219
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=20.11 E-value=1.2e+02 Score=18.54 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=20.8
Q ss_pred eeecCCHHHHHHHHHc----------CCceEEEec
Q 039381 2 IEPIFSENRHRQALTS----------GEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~----------G~vdA~i~d 26 (138)
+..+.+..+++..+.+ ...|.++.|
T Consensus 35 v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D 69 (149)
T 1k66_A 35 IYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLD 69 (149)
T ss_dssp EEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEEC
T ss_pred EEEECCHHHHHHHHHhcccccCcccCCCCcEEEEE
Confidence 4567888999999987 789999986
No 220
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=20.08 E-value=63 Score=18.80 Aligned_cols=25 Identities=4% Similarity=-0.047 Sum_probs=18.6
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+..+.+..+++..+.+...|+++.|
T Consensus 28 v~~~~~~~~~~~~l~~~~~dlii~d 52 (119)
T 2j48_A 28 VIWLVDGSTALDQLDLLQPIVILMA 52 (119)
T ss_dssp EEEESCHHHHHHHHHHHCCSEEEEE
T ss_pred EEEecCHHHHHHHHHhcCCCEEEEe
Confidence 3456777888888887788888776
Done!