Query 039381
Match_columns 138
No_of_seqs 124 out of 1375
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 15:24:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039381.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039381hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pb7a_ c.94.1.1 (A:) N-methyl 99.8 5.9E-19 4.3E-23 133.1 9.8 92 2-94 197-289 (289)
2 d2a5sa1 c.94.1.1 (A:7-142,A:14 99.7 5E-18 3.6E-22 127.9 9.4 88 4-93 185-277 (277)
3 d1wdna_ c.94.1.1 (A:) Glutamin 99.6 1.9E-15 1.4E-19 108.9 9.4 89 2-90 130-221 (223)
4 d1ii5a_ c.94.1.1 (A:) Glutamat 99.6 5.6E-15 4.1E-19 106.7 9.8 88 1-88 137-226 (226)
5 d1xt8a1 c.94.1.1 (A:10-257) Pu 99.5 2.5E-14 1.8E-18 105.7 7.7 88 1-88 143-232 (248)
6 d1mqia_ c.94.1.1 (A:) Glutamat 99.5 1.3E-13 9.6E-18 101.4 9.7 89 5-93 169-260 (260)
7 d1lsta_ c.94.1.1 (A:) Lysine-, 99.3 2.4E-12 1.7E-16 92.8 8.7 90 2-91 137-235 (238)
8 d2f34a1 c.94.1.1 (A:5-116,A:11 99.2 3.6E-11 2.6E-15 86.1 8.9 68 20-88 178-246 (246)
9 d2ozza1 c.94.1.1 (A:1-228) Hyp 96.8 0.00051 3.7E-08 48.9 4.1 79 7-88 140-221 (228)
10 d1xs5a_ c.94.1.1 (A:) Putative 92.7 0.069 5E-06 37.2 4.7 41 2-42 34-75 (240)
11 d1ce2a1 c.94.1.2 (A:1-333) Lac 85.0 0.9 6.6E-05 33.6 6.0 55 3-59 37-100 (333)
12 d2hava1 c.94.1.2 (A:340-664) T 82.7 1.1 7.7E-05 33.0 5.5 26 3-28 30-55 (325)
13 d1h76a2 c.94.1.2 (A:342-687) T 80.8 1.3 9.3E-05 32.8 5.4 26 3-28 32-57 (346)
14 d1p99a_ c.94.1.1 (A:) Putative 80.4 0.69 5E-05 31.9 3.5 36 2-37 30-66 (255)
15 d1eh3a_ c.94.1.2 (A:) Lactofer 78.3 2.4 0.00018 30.9 6.2 26 3-28 34-59 (324)
16 d1ieja_ c.94.1.2 (A:) Ovotrans 78.3 1.1 8.3E-05 33.0 4.3 55 4-60 35-98 (329)
17 d2ozza1 c.94.1.1 (A:1-228) Hyp 78.2 1.5 0.00011 29.9 4.8 35 2-36 45-79 (228)
18 d2b6da1 c.94.1.2 (A:342-685) L 77.0 2.2 0.00016 31.4 5.6 27 3-29 31-57 (344)
19 d1ryoa_ c.94.1.2 (A:) Transfer 74.1 2.5 0.00018 31.0 5.2 53 5-59 39-100 (324)
20 d1atga_ c.94.1.1 (A:) Molybdat 72.3 4.3 0.00031 26.1 5.8 83 2-86 140-225 (231)
21 d1ii5a_ c.94.1.1 (A:) Glutamat 68.5 3.2 0.00023 27.2 4.4 23 3-25 49-71 (226)
22 d2d3ia2 c.94.1.2 (A:335-686) O 64.1 5.6 0.00041 29.3 5.3 27 4-30 39-65 (352)
23 d1amfa_ c.94.1.1 (A:) Molybdat 61.2 12 0.00088 23.8 6.3 79 3-86 145-226 (231)
24 d1xs5a_ c.94.1.1 (A:) Putative 52.1 10 0.00076 25.3 4.8 79 10-88 155-234 (240)
25 d1k4ia_ d.115.1.2 (A:) 3,4-dih 44.5 8.5 0.00062 26.4 3.2 22 5-26 1-22 (216)
26 d2fyia1 c.94.1.1 (A:88-307) Ly 44.4 33 0.0024 21.6 7.8 78 4-85 136-216 (220)
27 d1us5a_ c.94.1.1 (A:) Putative 43.2 11 0.00078 26.2 3.7 23 3-25 148-170 (298)
28 d2qmwa1 c.94.1.1 (A:1-184) Pre 40.6 10 0.00075 25.1 3.1 24 2-25 28-51 (184)
29 d1tksa_ d.115.1.2 (A:) 3,4-dih 36.5 13 0.00097 25.1 3.1 23 4-26 2-24 (202)
30 d1pota_ c.94.1.1 (A:) Spermidi 32.6 65 0.0047 21.5 6.8 75 10-86 188-265 (322)
31 d1tjya_ c.93.1.1 (A:) AI-2 rec 32.1 30 0.0022 22.9 4.6 30 2-31 218-247 (316)
32 d1us5a_ c.94.1.1 (A:) Putative 31.4 64 0.0047 21.8 6.4 58 3-61 39-106 (298)
33 d1ny5a1 c.23.1.1 (A:1-137) Tra 30.6 18 0.0013 22.1 2.9 71 2-72 27-118 (137)
34 d1xhfa1 c.23.1.1 (A:2-122) Aer 29.5 20 0.0015 21.3 2.9 25 2-26 29-53 (121)
35 d1krwa_ c.23.1.1 (A:) NTRC rec 29.1 16 0.0012 21.8 2.4 25 2-26 30-54 (123)
36 d1ys7a2 c.23.1.1 (A:7-127) Tra 27.7 22 0.0016 21.1 2.9 25 2-26 28-52 (121)
37 d1dpea_ c.94.1.1 (A:) Dipeptid 27.0 13 0.00097 27.2 2.0 73 2-75 216-290 (507)
38 d1vr5a1 c.94.1.1 (A:23-557) Ol 26.3 44 0.0032 24.6 4.9 29 3-31 204-232 (535)
39 d1g57a_ d.115.1.2 (A:) 3,4-dih 26.2 11 0.00077 25.7 1.1 23 4-26 8-30 (209)
40 d1kgsa2 c.23.1.1 (A:2-123) Pho 26.0 25 0.0018 20.8 2.9 25 2-26 28-52 (122)
41 d2nxoa1 c.94.1.1 (A:5-281) Hyp 25.7 34 0.0024 22.9 3.9 24 5-28 33-56 (277)
42 d2a9pa1 c.23.1.1 (A:2-118) DNA 25.2 20 0.0014 21.2 2.2 25 2-26 27-51 (117)
43 d1snna_ d.115.1.2 (A:) 3,4-dih 24.6 20 0.0015 24.4 2.4 21 6-26 1-21 (219)
44 d1twya_ c.94.1.1 (A:) ABC tran 24.3 19 0.0014 23.9 2.2 55 4-62 34-88 (249)
45 d1mvoa_ c.23.1.1 (A:) PhoP rec 23.5 22 0.0016 21.0 2.2 25 2-26 29-53 (121)
46 d1zh2a1 c.23.1.1 (A:2-120) Tra 23.2 22 0.0016 21.0 2.2 25 2-26 27-51 (119)
47 d2c1xa1 c.87.1.10 (A:7-456) UD 23.0 26 0.0019 24.7 2.9 71 14-85 332-415 (450)
48 d2pl1a1 c.23.1.1 (A:1-119) Pho 22.6 32 0.0024 20.2 2.9 25 2-26 27-51 (119)
49 d1i6aa_ c.94.1.1 (A:) Hydrogen 22.5 37 0.0027 20.8 3.3 69 4-75 134-205 (212)
50 d1peya_ c.23.1.1 (A:) Sporulat 22.1 24 0.0017 20.9 2.2 25 2-26 28-52 (119)
51 d1dbwa_ c.23.1.1 (A:) Transcri 22.1 33 0.0024 20.3 2.9 72 2-73 30-122 (123)
52 d1mb3a_ c.23.1.1 (A:) Cell div 22.1 25 0.0018 20.8 2.2 26 2-27 28-53 (123)
53 d1xvxa_ c.94.1.1 (A:) Ferric-b 21.7 1.1E+02 0.0079 20.4 6.7 83 2-85 171-262 (311)
54 d2hhma_ e.7.1.1 (A:) Inositol 21.1 71 0.0052 21.4 4.9 68 3-70 187-262 (272)
55 d1r9la_ c.94.1.1 (A:) Glycine 20.4 42 0.0031 22.8 3.5 53 7-59 45-101 (309)
56 d1zgza1 c.23.1.1 (A:2-121) Tor 20.2 38 0.0028 19.7 2.9 26 2-27 28-53 (120)
No 1
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.77 E-value=5.9e-19 Score=133.09 Aligned_cols=92 Identities=22% Similarity=0.391 Sum_probs=86.7
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLR 80 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~ 80 (138)
++.|++..+++++|.+|++||++.|.+.+.++.++.|+ +. ++..+..++||||++||+||++.||.+|.+|+++|+++
T Consensus 197 ~~~~~~~~~~~~~l~~g~~da~i~d~~~~~~~~~~~~~-l~~~~~~~~~~~~~~a~~k~~~l~~~in~al~~l~~~G~~~ 275 (289)
T d1pb7a_ 197 KHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCD-LVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFME 275 (289)
T ss_dssp TTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTT-EEECSSCSEEEEECCEEETTCSSHHHHHHHHHHHHHSSHHH
T ss_pred EEEcCCHHHHHHHHhCCCeEEEEehhhHHHHHHhhCCC-EEEeccccCceeEEEEEcCChHHHHHHHHHHHHHHHCCHHH
Confidence 46789999999999999999999999999999888886 88 99999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCC
Q 039381 81 ELEEAMLSPYNCST 94 (138)
Q Consensus 81 ~l~~kW~~~~~c~~ 94 (138)
+|++|||+.++|.+
T Consensus 276 ~l~~Kw~~~~~c~~ 289 (289)
T d1pb7a_ 276 DLDKTWVRYQECDS 289 (289)
T ss_dssp HHHHHHTSSSCCCC
T ss_pred HHHHhccCCCCCCC
Confidence 99999999999963
No 2
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]}
Probab=99.73 E-value=5e-18 Score=127.93 Aligned_cols=88 Identities=23% Similarity=0.427 Sum_probs=78.6
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhc--CCCee-eC--CCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCc
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKN--CKNFT-TG--PTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGK 78 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~--~~~~~-~~--~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~ 78 (138)
.+++.++++++|++|++||++.|.+++.|++++. |+ +. ++ ..+...+||||+|||+||++.||.+|.+|+++|+
T Consensus 185 ~~~~~~~~~~~l~~G~~Da~i~d~~~~~y~~~~~~~~~-l~~~~~~~~~~~~~ygia~~k~s~l~~~in~al~~l~~~G~ 263 (277)
T d2a5sa1 185 NQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCK-LVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGE 263 (277)
T ss_dssp CCSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSC-EEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHcCCcceecccHHHHHHHHhhCCCCc-EEEecCCCCcCcceEEEEEeCChHHHHHHHHHHHHHHHCCH
Confidence 4678899999999999999999999999998875 44 55 43 4578899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCC
Q 039381 79 LRELEEAMLSPYNCS 93 (138)
Q Consensus 79 ~~~l~~kW~~~~~c~ 93 (138)
+++|++|||+ +.|+
T Consensus 264 ~~~L~~KW~~-g~~~ 277 (277)
T d2a5sa1 264 MEELETLWLT-GICH 277 (277)
T ss_dssp HHHHHHHHTC-CCCC
T ss_pred HHHHHhhhcC-CCCC
Confidence 9999999996 7885
No 3
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]}
Probab=99.60 E-value=1.9e-15 Score=108.87 Aligned_cols=89 Identities=19% Similarity=0.332 Sum_probs=81.2
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhc-CCCee-eCCCCCcceeEEEEeCCCh-hHHHHHHHHHHHhhcCc
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKN-CKNFT-TGPTYSVGGFGFAFPKDSA-YLADFSQAILQLSEEGK 78 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~-~~~~~-~~~~~~~~~~g~a~~Kgsp-l~~~in~~l~~l~~~G~ 78 (138)
++.+++.++++++|.+|++|+++.+.+.+.+++++. +..+. ++.++...+++++++|++| |++.||++|.+|+++|+
T Consensus 130 ~~~~~~~~~~~~~l~~g~vD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~i~~~~~~G~ 209 (223)
T d1wdna_ 130 LRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGT 209 (223)
T ss_dssp EEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHHHHHHTSH
T ss_pred eeeeCCHHHHHHHHhcCCccccccccHHhhhhhhhcCCCcceecCCCCCcceEEEEEECCCHHHHHHHHHHHHHHHhCcH
Confidence 678899999999999999999999999999988775 44577 8888889999999999998 99999999999999999
Q ss_pred HHHHHHHhcCCC
Q 039381 79 LRELEEAMLSPY 90 (138)
Q Consensus 79 ~~~l~~kW~~~~ 90 (138)
+++|.+|||+.+
T Consensus 210 ~~~i~~ky~g~d 221 (223)
T d1wdna_ 210 YNEIYKKWFGTE 221 (223)
T ss_dssp HHHHHHHHHSSC
T ss_pred HHHHHHHhcCCC
Confidence 999999999864
No 4
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}
Probab=99.57 E-value=5.6e-15 Score=106.70 Aligned_cols=88 Identities=17% Similarity=0.251 Sum_probs=79.5
Q ss_pred CeeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC-CCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCc
Q 039381 1 NIEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC-KNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGK 78 (138)
Q Consensus 1 ~i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~-~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~ 78 (138)
+++.+++..+++++|.+|++|+++.+...+.+++++.+ ..+. .+..+..+.|+|+++|+++|++.||++|.+|+++|+
T Consensus 137 ~i~~~~~~~~~~~~l~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~in~~i~~l~~~g~ 216 (226)
T d1ii5a_ 137 DVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRV 216 (226)
T ss_dssp EEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETTCTTHHHHHHHHHHHHHTTH
T ss_pred eeeccchHHHHHHHHhCCCeeeEeccchhHHHHHhhcccccccccCcCCCCceEEEEECCCHHHHHHHHHHHHHHHhCcH
Confidence 36789999999999999999999999999999988764 3366 667778889999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 039381 79 LRELEEAMLS 88 (138)
Q Consensus 79 ~~~l~~kW~~ 88 (138)
+++|.+|||+
T Consensus 217 l~~i~~kylG 226 (226)
T d1ii5a_ 217 IAEFTERWLG 226 (226)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHhhCc
Confidence 9999999996
No 5
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}
Probab=99.49 E-value=2.5e-14 Score=105.71 Aligned_cols=88 Identities=10% Similarity=-0.043 Sum_probs=77.8
Q ss_pred CeeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCCh-hHHHHHHHHHHHhhcCc
Q 039381 1 NIEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSA-YLADFSQAILQLSEEGK 78 (138)
Q Consensus 1 ~i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgsp-l~~~in~~l~~l~~~G~ 78 (138)
+++.+++.++++.+|.+|++|+++.|.+.+.+++++.++... ++..+...+++++++|++| |++.||.+|.+|+++|+
T Consensus 143 ~i~~~~s~~~~~~~l~~g~vD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~k~~~~l~~~in~~l~~i~~~G~ 222 (248)
T d1xt8a1 143 KTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQF 222 (248)
T ss_dssp EEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEEEEEEEEEEECCEEETTCHHHHHHHHHHHHHHHTTTH
T ss_pred ccccccchhhHHHhhcccccccccccHHHHHHHHHhCCcceEecccCCCCceEEEEEECCCHHHHHHHHHHHHHHHHCCH
Confidence 367899999999999999999999999988888888775334 6667778889999999998 99999999999999999
Q ss_pred HHHHHHHhcC
Q 039381 79 LRELEEAMLS 88 (138)
Q Consensus 79 ~~~l~~kW~~ 88 (138)
+++|++||+.
T Consensus 223 ~~~i~~k~~~ 232 (248)
T d1xt8a1 223 FHKAYDETLK 232 (248)
T ss_dssp HHHHHHHHTG
T ss_pred HHHHHHHHHH
Confidence 9988888765
No 6
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]}
Probab=99.46 E-value=1.3e-13 Score=101.42 Aligned_cols=89 Identities=20% Similarity=0.268 Sum_probs=74.7
Q ss_pred cCCHHHHHHHHHcCCce-EEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHHHH
Q 039381 5 IFSENRHRQALTSGEIA-AAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLREL 82 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vd-A~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~~l 82 (138)
..+..+.+.++..++.+ +++.+.+.+.++.++.+.... ++.++..++||||+|||+||++.||++|.+|+++|++++|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~s~l~~~in~aL~~l~~~G~~~~l 248 (260)
T d1mqia_ 169 VRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKL 248 (260)
T ss_dssp BSSHHHHHHHHHHTTTSEEEEEEHHHHHHHTTSTTCCEEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHH
T ss_pred ecChHHHHHHHHcCCCCEEEEecHHHHHHHHhcCCCceEEecccCCcceEEEEEcCChHHHHHHHHHHHHHHHCCHHHHH
Confidence 45667788888777755 566677777777766654467 9999999999999999999999999999999999999999
Q ss_pred HHHhcCC-CCCC
Q 039381 83 EEAMLSP-YNCS 93 (138)
Q Consensus 83 ~~kW~~~-~~c~ 93 (138)
++|||+. ++|.
T Consensus 249 ~~KwF~~~~~~~ 260 (260)
T d1mqia_ 249 KNKWWYDKGECG 260 (260)
T ss_dssp HHHHHTTTCSCC
T ss_pred HHHhCCCCCCCC
Confidence 9999997 5884
No 7
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}
Probab=99.33 E-value=2.4e-12 Score=92.84 Aligned_cols=90 Identities=21% Similarity=0.333 Sum_probs=73.7
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhc--CCCee-eCCC-----CCcceeEEEEeCCCh-hHHHHHHHHHH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKN--CKNFT-TGPT-----YSVGGFGFAFPKDSA-YLADFSQAILQ 72 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~--~~~~~-~~~~-----~~~~~~g~a~~Kgsp-l~~~in~~l~~ 72 (138)
++..++.++++.+|.+|++|+++.+...+.++..+. ..... .+.. +...+++|+++|+++ |++.||++|.+
T Consensus 137 ~~~~~~~~~~~~~l~~gr~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~~~l~~~in~~l~~ 216 (238)
T d1lsta_ 137 VVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTE 216 (238)
T ss_dssp EEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTCHHHHHHHHHHHHH
T ss_pred eeeeCCHHHHHHHHhhhcccEEEecHHHHHHHHHhCccCCceEEEeecccccccccccEEEEEeCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999988887766553 22233 3332 245578999999987 99999999999
Q ss_pred HhhcCcHHHHHHHhcCCCC
Q 039381 73 LSEEGKLRELEEAMLSPYN 91 (138)
Q Consensus 73 l~~~G~~~~l~~kW~~~~~ 91 (138)
|+++|++++|.+|||+.+.
T Consensus 217 ~~~~G~~~~I~~kyfg~~~ 235 (238)
T d1lsta_ 217 LRQDGTYDKMAKKYFDFNV 235 (238)
T ss_dssp HHHTTHHHHHHHTTCSSCT
T ss_pred HHHCcHHHHHHHHHCCCCC
Confidence 9999999999999998753
No 8
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]}
Probab=99.19 E-value=3.6e-11 Score=86.11 Aligned_cols=68 Identities=32% Similarity=0.497 Sum_probs=60.3
Q ss_pred ceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHHHHHHHhcC
Q 039381 20 IAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLRELEEAMLS 88 (138)
Q Consensus 20 vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~~l~~kW~~ 88 (138)
.++++.+.+.+.+..++.+. +. ++..+...+|++|+|||++|++.+|.+|.+|+++|++++|++|||.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~k~s~l~~~~n~~l~~l~~~G~~~~i~~KwFk 246 (246)
T d2f34a1 178 DYALLMESTSIEYVTQRNCN-LTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWR 246 (246)
T ss_dssp SEEEEEEHHHHHHHHHHCTT-EEEESSCSSCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ceEEEechHHHHHHHhcCCC-eEEecccCCCceEEEEEeCChHHHHHHHHHHHHHHHCCHHHHHHHhhCC
Confidence 44667777777777777775 88 9989999999999999999999999999999999999999999984
No 9
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}
Probab=96.81 E-value=0.00051 Score=48.88 Aligned_cols=79 Identities=13% Similarity=0.074 Sum_probs=54.1
Q ss_pred CHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCC--CCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHHHHH
Q 039381 7 SENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGP--TYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLRELE 83 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~--~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~~l~ 83 (138)
+.++++++|.+|++||++++.+....+......... ... ......+.++++++++.++.+.+++ .+..++.++.
T Consensus 140 ~~~~~~~al~~G~vDa~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivir~~~~~v~~lv~a~---ie~~e~~~~q 216 (228)
T d2ozza1 140 SYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAV---VDKHALLAHQ 216 (228)
T ss_dssp CHHHHHHHHHHTSCCEEEEEC-CHHHHHHTTEEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHH---CCHHHHHHHH
T ss_pred CHHHHHHHHHcCceeEEEeCcHHHHHHHhcCcccceeecccccccceeEEEEEcCCcHHHHHHHHHH---HhHHHHHHHH
Confidence 578899999999999999998888777666533122 222 2234567889999987555554444 4455577778
Q ss_pred HHhcC
Q 039381 84 EAMLS 88 (138)
Q Consensus 84 ~kW~~ 88 (138)
++.+.
T Consensus 217 k~i~~ 221 (228)
T d2ozza1 217 QRVVS 221 (228)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 87775
No 10
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]}
Probab=92.73 E-value=0.069 Score=37.23 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=31.8
Q ss_pred eeecCCHHHHHHHHHcCCceEEEe-cHHHHHHHHHhcCCCee
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFL-EVPYVKLFLAKNCKNFT 42 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~-d~~~l~~~~~~~~~~~~ 42 (138)
++.|.+..++.+||.+|++|+... ..+.+..+.+.....+.
T Consensus 34 ~v~f~~g~~~~~Al~~G~iD~~~~~~~~~l~~~~~~~~~~i~ 75 (240)
T d1xs5a_ 34 IVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQEHNGDLV 75 (240)
T ss_dssp EEECSCHHHHHHHHHHTSSSEEEEEEHHHHHHHHHHHTCCEE
T ss_pred EEEeCChhhHHHHHHcCCcceeccCCHHHHHHHHHhCCCcEE
Confidence 678999999999999999998765 57777666555443355
No 11
>d1ce2a1 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]}
Probab=85.00 E-value=0.9 Score=33.59 Aligned_cols=55 Identities=16% Similarity=0.072 Sum_probs=34.9
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHh-cCCCee--eCCCC------CcceeEEEEeCC
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAK-NCKNFT--TGPTY------SVGGFGFAFPKD 59 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~-~~~~~~--~~~~~------~~~~~g~a~~Kg 59 (138)
+.-.+..++++++++|++|+++.|.-. .|...+ ..+ +. +.+.+ ....+++|+-|.
T Consensus 37 V~~~s~~~Ci~~I~~g~ADi~~ld~~~-~y~A~~~~~~-l~pi~~E~y~~~~~~~~~Y~~VaVVkk 100 (333)
T d1ce2a1 37 VRRASVLECIRAITEKKADAVTLDGGM-VFEAGRDPYK-LRPVAAEIYGTKESPQTHYYAVAVVKK 100 (333)
T ss_dssp EECSSHHHHHHHHHTTSCCBEEECHHH-HHHHHSTTTC-EEEEEEEEEECSSSEESEEEEEEEEET
T ss_pred EeCCCHHHHHHHHHcCCCCEEEEChHH-HHHhhhccCC-CEEEEEeeeccCCCCCcEEEEEEEEec
Confidence 345688999999999999999999443 233333 334 44 33221 233577776554
No 12
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=82.68 E-value=1.1 Score=33.05 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=22.3
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVP 28 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~ 28 (138)
+.-.+..+++++|++|++|+++.|.-
T Consensus 30 v~~~s~~~Ci~~I~~g~ADi~~ld~~ 55 (325)
T d2hava1 30 VSAETTEDCIAKIMNGEADAMSLDGG 55 (325)
T ss_dssp EECSSHHHHHHHHHHTSCCEEEECHH
T ss_pred EeCCCHHHHHHHHHcCCCCEEEEChH
Confidence 34578899999999999999999954
No 13
>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId: 9823]}
Probab=80.78 E-value=1.3 Score=32.80 Aligned_cols=26 Identities=15% Similarity=0.049 Sum_probs=22.4
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVP 28 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~ 28 (138)
+.-.+..+++++|++|++|+++.|.-
T Consensus 32 v~~~s~~~C~~~I~~g~ADi~~ld~~ 57 (346)
T d1h76a2 32 VSAENTEDCIAKIVKGEADAMSLDGG 57 (346)
T ss_dssp EEESSHHHHHHHHHHTSCCBEEECHH
T ss_pred EeCCCHHHHHHHHHcCCCCEEEEChH
Confidence 34578899999999999999999944
No 14
>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Staphylococcus aureus [TaxId: 1280]}
Probab=80.43 E-value=0.69 Score=31.95 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=28.7
Q ss_pred eeecCCHHHHHHHHHcCCceEEEe-cHHHHHHHHHhc
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFL-EVPYVKLFLAKN 37 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~-d~~~l~~~~~~~ 37 (138)
++.|++..+..+||.+|++|+.+. ..|.+..+.+..
T Consensus 30 ~~~f~~~~~~~~Al~~G~iD~~~~~~~~~l~~~~~~~ 66 (255)
T d1p99a_ 30 IKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAH 66 (255)
T ss_dssp EEECSSTTSHHHHHHTTSSSEEEEEEHHHHHHHHHHC
T ss_pred EEEcCCchhHHHHHHcCCCCEEccCCHHHHHHHHhhC
Confidence 678999999999999999999765 567665555543
No 15
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.28 E-value=2.4 Score=30.94 Aligned_cols=26 Identities=19% Similarity=-0.036 Sum_probs=22.5
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVP 28 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~ 28 (138)
+.-.+..+++++|++|++|+++.|.-
T Consensus 34 v~~~s~~~C~~~i~~g~AD~~~l~~~ 59 (324)
T d1eh3a_ 34 IKRDSPIQCIQAIAENRADAVTLDGG 59 (324)
T ss_dssp EECSSHHHHHHHHHTTSCCBEEECHH
T ss_pred EECCCHHHHHHHHHCCCCCEEEECcH
Confidence 45578999999999999999999943
No 16
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=78.26 E-value=1.1 Score=33.00 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=34.4
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHHHHHHH-hcCCCee--eCCCC------CcceeEEEEeCCC
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYVKLFLA-KNCKNFT--TGPTY------SVGGFGFAFPKDS 60 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~-~~~~~~~--~~~~~------~~~~~g~a~~Kgs 60 (138)
.=.+..++++++++|++|+++.|.-.+ |... ...+ +. +.+.+ ....+++|+.|.+
T Consensus 35 ~~~s~~~C~~~I~~g~AD~~~ld~~~~-y~Ag~~~~~-L~pi~~E~y~~~~~~~~~y~aVavvkk~ 98 (329)
T d1ieja_ 35 QKATYLDCIKAIANNEADAITLDGGQV-FEAGLAPYK-LKPIAAEVYEHTEGSTTSYYAVAVVKKG 98 (329)
T ss_dssp ECSSHHHHHHHHHTTSCCBEEECHHHH-HHHTSTTTC-CEEEEEEEEECSSSEESEEEEEEEEETT
T ss_pred eCCCHHHHHHHHhcCCCCEEEEChHHH-HHhhcccCC-CEEEEEEeecCCCCCceEEEEEEEEecC
Confidence 346889999999999999999995543 3332 2223 33 33322 1235777776543
No 17
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}
Probab=78.19 E-value=1.5 Score=29.86 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=27.6
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHh
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAK 36 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~ 36 (138)
++.+.+..+.+++|.+|++|..+..........++
T Consensus 45 ~~~~~g~~~~~~al~~G~~D~~~~~~~~~~~~~~~ 79 (228)
T d2ozza1 45 YAHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQ 79 (228)
T ss_dssp EEECSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHH
T ss_pred EEEecCchHHHHHHHcCCCCEEecCcHHHHHHHhc
Confidence 56788999999999999999988875555554444
No 18
>d2b6da1 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus) [TaxId: 9913]}
Probab=77.01 E-value=2.2 Score=31.42 Aligned_cols=27 Identities=19% Similarity=0.136 Sum_probs=23.1
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPY 29 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~ 29 (138)
+.-++..+++++|++|++|+++.|.-.
T Consensus 31 v~~~s~~~C~~~I~~g~ADi~~ld~~~ 57 (344)
T d2b6da1 31 ATASTTDDCIVLVLKGEADALNLDGGY 57 (344)
T ss_dssp EEESSHHHHHHHHHHTSCCEEEECHHH
T ss_pred EeCCCHHHHHHHHHcCCCCEEEEChHH
Confidence 445789999999999999999999443
No 19
>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.14 E-value=2.5 Score=30.97 Aligned_cols=53 Identities=17% Similarity=0.046 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHcCCceEEEecHHHHHHHHH-hcCCCee--eCCCC------CcceeEEEEeCC
Q 039381 5 IFSENRHRQALTSGEIAAAFLEVPYVKLFLA-KNCKNFT--TGPTY------SVGGFGFAFPKD 59 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~-~~~~~~~--~~~~~------~~~~~g~a~~Kg 59 (138)
-.+..+++++|++|++|+++.|.-.+ |... ...+ +. +.+.+ ....|++|+-|.
T Consensus 39 ~~~~~~C~~~I~~g~AD~~~ld~~~~-y~A~~~~~~-L~pi~~E~y~~~~~~~~~y~aVavvkk 100 (324)
T d1ryoa_ 39 KASYLDCIRAIAANEADAVTLDAGLV-YDAYLAPNN-LKPVVAEFYGSKEDPQTFYYAVAVVKK 100 (324)
T ss_dssp ESSHHHHHHHHHTTSCCBEEECHHHH-HHHHSTTTC-CEEEEEEEEECSSSEESEEEEEEEEET
T ss_pred CCCHHHHHHHHHcCCCCEEEEChHHH-HHHhcccCC-CEEEEEEeeccCCCCceEEEEEEEEec
Confidence 46789999999999999999995543 3332 2333 43 33321 233678877543
No 20
>d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter vinelandii [TaxId: 354]}
Probab=72.30 E-value=4.3 Score=26.13 Aligned_cols=83 Identities=17% Similarity=0.019 Sum_probs=51.7
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee--eCC-CCCcceeEEEEeCCChhHHHHHHHHHHHhhcCc
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT--TGP-TYSVGGFGFAFPKDSAYLADFSQAILQLSEEGK 78 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~--~~~-~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~ 78 (138)
++...+..+....+..|++|+.+.....+.....+... .. ... ......|++++.++++-.+...+.+.=|. +-+
T Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~a~~~~~A~~Fidfl~-S~e 217 (231)
T d1atga_ 140 IVEANSVGQAHSQTASGAADLGFVALAQIIQAAAKIPG-SHWFPPANYYEPIVQQAVITKSTAEKANAEQFMSWMK-GPK 217 (231)
T ss_dssp EEEESSHHHHHHHHHTTSSSEEEEEGGGTCCTTSCCSS-EEECCCGGGSCCCEEEEEEBTTCSCHHHHHHHHHHTT-SHH
T ss_pred eeeccccchhhHHhhccchhhhhhHHHHHHHhhccccc-eeeeecCCCceeeeeeEEEECCCCCHHHHHHHHHHHC-CHH
Confidence 34567788889999999999988754433332222222 22 222 22345689999999886666655444443 335
Q ss_pred HHHHHHHh
Q 039381 79 LRELEEAM 86 (138)
Q Consensus 79 ~~~l~~kW 86 (138)
-+++..++
T Consensus 218 ~Q~i~~~~ 225 (231)
T d1atga_ 218 AVAIIKAA 225 (231)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 57777776
No 21
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}
Probab=68.48 E-value=3.2 Score=27.24 Aligned_cols=23 Identities=17% Similarity=0.010 Sum_probs=19.9
Q ss_pred eecCCHHHHHHHHHcCCceEEEe
Q 039381 3 EPIFSENRHRQALTSGEIAAAFL 25 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~ 25 (138)
+.+.+..+++++|++|++|+++.
T Consensus 49 v~~~~~~~~~~~l~~G~~D~~~~ 71 (226)
T d1ii5a_ 49 VRQNSISAGITAVAEGELDILIG 71 (226)
T ss_dssp EECSCHHHHHHHHHTTSCSEEEE
T ss_pred EEcCCHHHHHHHHhcCCcccccc
Confidence 45778899999999999998864
No 22
>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=64.10 E-value=5.6 Score=29.29 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=23.0
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHH
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYV 30 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l 30 (138)
.-++..+++++|+.|++|+++.|.--+
T Consensus 39 ~~~~~~~Ci~~I~~g~AD~~~ld~~~~ 65 (352)
T d2d3ia2 39 VVDETKDCIIKIMKGEADAVALDGGLV 65 (352)
T ss_dssp EESSHHHHHHHHHHTSCCBEEECHHHH
T ss_pred eCCCHHHHHHHHHcCCCCEEEECHHHH
Confidence 347889999999999999999995543
No 23
>d1amfa_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Escherichia coli [TaxId: 562]}
Probab=61.16 E-value=12 Score=23.84 Aligned_cols=79 Identities=9% Similarity=-0.010 Sum_probs=50.0
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee--eCC-CCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT--TGP-TYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKL 79 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~--~~~-~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~ 79 (138)
...++..+....+.+|.+|+.+.....+ ......... .+. ......|++++.++++- +. -+.+.+..-+-+-
T Consensus 145 ~~~~~~~~~~~~~~~g~~~~~i~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~-~~-A~~Fi~fl~S~e~ 219 (231)
T d1amfa_ 145 APAEDVRGALALVERNEAPLGIVYGSDA---VASKGVKVVATFPEDSHKKVEYPVAVVEGHNN-AT-VKAFYDYLKGPQA 219 (231)
T ss_dssp EEESSHHHHHHHHHTTSSSEEEEEHHHH---HHCSSEEEEEECCGGGSCCEEEEEEEBTTCCS-HH-HHHHHHHHTSHHH
T ss_pred ccccchhHHHHHHHcCCceEEEeehhhh---hhccCCCceEEeCCCCceEeEEEEEEECCCCC-HH-HHHHHHHHCCHHH
Confidence 3467788889999999999999764432 233222222 332 33455789999999764 22 2345555566566
Q ss_pred HHHHHHh
Q 039381 80 RELEEAM 86 (138)
Q Consensus 80 ~~l~~kW 86 (138)
+++..+|
T Consensus 220 Q~il~~~ 226 (231)
T d1amfa_ 220 AEIFKRY 226 (231)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 7777776
No 24
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]}
Probab=52.08 E-value=10 Score=25.26 Aligned_cols=79 Identities=10% Similarity=-0.022 Sum_probs=40.9
Q ss_pred HHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eCCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHHHHHHHhcC
Q 039381 10 RHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TGPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLRELEEAMLS 88 (138)
Q Consensus 10 e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~~l~~kW~~ 88 (138)
...+++..|++||.+...|.............. ...........+++++++.--+.+..-+..++.+..-+-|.++|-+
T Consensus 155 ~~~~a~~~~~vdaa~~~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~a~~~~e~~~~I~~~~~g 234 (240)
T d1xs5a_ 155 SALLPRVFDQVDGAVINGNYAIMAGLSARRDGLAVEPDASAYANVLVVKRGNEADARVQAVLRALCGGRVRTYLKERYKG 234 (240)
T ss_dssp GGGHHHHGGGSSEEEECHHHHHHTTCCTTTTCSEECSCGGGGCEEEEEETTCTTCHHHHHHHHHHTSHHHHHHHHHHCTT
T ss_pred HHHHHHhhccccEEEEcchHHHHhcCCcccceeeecCCCCCeEEEEEEeccccCCHHHHHHHHHHCCHHHHHHHHHhcCC
Confidence 345667789999999987765443222221122 2222222334567777643334454444444444433445566644
No 25
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]}
Probab=44.52 E-value=8.5 Score=26.38 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=19.4
Q ss_pred cCCHHHHHHHHHcCCceEEEec
Q 039381 5 IFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i~d 26 (138)
|+++++++++|++|+.-.++.|
T Consensus 1 f~~ie~ai~~l~~G~~viv~Dd 22 (216)
T d1k4ia_ 1 FDAIPDVIQAFKNGEFVVVLDD 22 (216)
T ss_dssp CCCHHHHHHHHHTTCCEEEECC
T ss_pred CCcHHHHHHHHHCCCeEEEEeC
Confidence 7899999999999998777765
No 26
>d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]}
Probab=44.42 E-value=33 Score=21.56 Aligned_cols=78 Identities=3% Similarity=-0.064 Sum_probs=50.5
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-e--CCCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHH
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-T--GPTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLR 80 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~--~~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~ 80 (138)
..++...+...+.+|.--+++-+..+..+ ...+ +. + ........++++.+|+..+...+...+.-+++.=..+
T Consensus 136 ~~~~~~~~~~~v~~g~gi~ilp~~~~~~~---~~~~-l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~Fi~~~~~~~~~~ 211 (220)
T d2fyia1 136 SAQDSDVIKTYVALGLGIGLVAEQSSGEQ---EEEN-LIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVE 211 (220)
T ss_dssp EESSHHHHHHHHHHTSCEEEEEGGGGSTT---CCTT-EEEECCTTTSCCEEEEEEEETTCCBCHHHHHHHHHHCSSSCHH
T ss_pred EEccHHHHHHHHhhcceEEeCcHHHHHHH---hcCC-EEEEeCCCCCCceEEEEEEECCCcCCHHHHHHHHHHHHcCCHH
Confidence 46677888888888887777665332211 1222 44 3 3344556688999999877777777777666666666
Q ss_pred HHHHH
Q 039381 81 ELEEA 85 (138)
Q Consensus 81 ~l~~k 85 (138)
.+.++
T Consensus 212 ~~~~~ 216 (220)
T d2fyia1 212 DIKRQ 216 (220)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 27
>d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]}
Probab=43.21 E-value=11 Score=26.19 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=19.9
Q ss_pred eecCCHHHHHHHHHcCCceEEEe
Q 039381 3 EPIFSENRHRQALTSGEIAAAFL 25 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~ 25 (138)
..+-+..++..+|++|++||++.
T Consensus 148 ~~~~~~~~~~~al~~g~iDa~~~ 170 (298)
T d1us5a_ 148 AIRVSASQGIQLMQDKRADALFY 170 (298)
T ss_dssp EECCCHHHHHHHHHTTSCSEEEE
T ss_pred eeccchhHHHHHhcCCceeEEEE
Confidence 34668899999999999999886
No 28
>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus aureus [TaxId: 1280]}
Probab=40.64 E-value=10 Score=25.09 Aligned_cols=24 Identities=8% Similarity=0.115 Sum_probs=21.0
Q ss_pred eeecCCHHHHHHHHHcCCceEEEe
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFL 25 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~ 25 (138)
++++++.++.+.++.+|++|..|.
T Consensus 28 ~~~~~s~~~v~~av~~~~~d~gvv 51 (184)
T d2qmwa1 28 FQPKSNLFEVIKAVADDDTSIGVV 51 (184)
T ss_dssp EEEESSHHHHHHHHHHCSSEEEEE
T ss_pred eeecCCHHHHHHHHHcCCCceeEE
Confidence 467899999999999999997665
No 29
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]}
Probab=36.46 E-value=13 Score=25.07 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=19.7
Q ss_pred ecCCHHHHHHHHHcCCceEEEec
Q 039381 4 PIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
.|++.++++++|++|+.-.++.|
T Consensus 2 ~~~~ie~ai~~l~~G~~Viv~Dd 24 (202)
T d1tksa_ 2 IFTPIEEALEAYKNGEFLIVMDD 24 (202)
T ss_dssp CSCCHHHHHHHHHTTCCEEEESS
T ss_pred CcccHHHHHHHHHCCCEEEEEeC
Confidence 48899999999999998777664
No 30
>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD {Escherichia coli [TaxId: 562]}
Probab=32.63 E-value=65 Score=21.51 Aligned_cols=75 Identities=8% Similarity=-0.080 Sum_probs=44.3
Q ss_pred HHHHHHHcCCceEEEecHHHHHHHHHhcCCCee--eC-CCCCcceeEEEEeCCChhHHHHHHHHHHHhhcCcHHHHHHHh
Q 039381 10 RHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT--TG-PTYSVGGFGFAFPKDSAYLADFSQAILQLSEEGKLRELEEAM 86 (138)
Q Consensus 10 e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~--~~-~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~~l~~kW 86 (138)
+..+++.+|++++.+..........+... ... +. +.-.....+++++|+++..+.--+.|.-|. +.+.++...+.
T Consensus 188 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~g~~~~~~~~~I~k~a~n~~~A~~fi~fl~-s~e~q~~~~~~ 265 (322)
T d1pota_ 188 NPANPYMEGEVNLGMIWNGSAFVARQAGT-PIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLL-RPDVAKQVAET 265 (322)
T ss_dssp CTHHHHHTTSCSEEEEEHHHHHHHHTTSC-CEEEECCTTCCEEEEEEEBCBTTCTTHHHHHHHHHHHH-SHHHHHHHHHH
T ss_pred ccccccccCcEEEEEEechhHHHHHhhcc-ccceeeccCCceeeeeeeEEecCCCCHHHHHHHHHHHc-CHHHHHHHHHH
Confidence 46788999999998876554444333333 244 22 212234578999999886665555554444 44444444443
No 31
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=32.05 E-value=30 Score=22.93 Aligned_cols=30 Identities=17% Similarity=-0.001 Sum_probs=25.6
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVK 31 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~ 31 (138)
++.++..++.+.++++|.+++.+.-.|...
T Consensus 218 ~vg~d~~~~~~~~i~~g~~~~~v~q~~~~~ 247 (316)
T d1tjya_ 218 IVGFSTPNVMRPYVQRGTVKEFGLWDVVQQ 247 (316)
T ss_dssp EEEBCCHHHHHHHHHHTSCSEEEECCHHHH
T ss_pred EEEEcCCHHHHHHHHhCCCcEEEecCHHHH
Confidence 467899999999999999999998777553
No 32
>d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]}
Probab=31.41 E-value=64 Score=21.80 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=36.8
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcC---------CCee-eCCCCCcceeEEEEeCCCh
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNC---------KNFT-TGPTYSVGGFGFAFPKDSA 61 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~---------~~~~-~~~~~~~~~~g~a~~Kgsp 61 (138)
+......+-+..|.+|++|..+.....+.+...... ..+. +. .+..+.+.|++++++.
T Consensus 39 ~~t~Gs~~Nl~~l~~g~~d~a~~~~~~~~~a~~g~~~~~~~~~~~~~lr~l~-~l~~~~~~~~v~~~s~ 106 (298)
T d1us5a_ 39 RSTGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRALA-ALYPEVVHVVARKDAG 106 (298)
T ss_dssp ECCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEE-EEEEEEEEEEEETTSS
T ss_pred EeCCCHHHHHHHHHCCCceEEEeccHHHHHHhcCccccccccccccceeEEE-EechhhheeeccccCC
Confidence 445566778899999999988876555544333211 1233 32 2345678888888765
No 33
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=30.60 E-value=18 Score=22.05 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=43.8
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH--H------HHHHHHHhcCC-Cee--eCCC--------CCcceeEEEEeCCCh-
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV--P------YVKLFLAKNCK-NFT--TGPT--------YSVGGFGFAFPKDSA- 61 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~--~------~l~~~~~~~~~-~~~--~~~~--------~~~~~~g~a~~Kgsp- 61 (138)
+....+..+++..+.+...|+++.|. | .+.......+. ++- .+.. +......|..++=++
T Consensus 27 v~~a~~~~eAl~~l~~~~~dlvilD~~mp~~~G~e~~~~lr~~~~~~piI~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~ 106 (137)
T d1ny5a1 27 VESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLE 106 (137)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHH
T ss_pred EEEECCHHHHHHHhhccccccchHHHhhhhhhHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 45678999999999999999999872 1 22233333332 222 2322 123446666655443
Q ss_pred -hHHHHHHHHHH
Q 039381 62 -YLADFSQAILQ 72 (138)
Q Consensus 62 -l~~~in~~l~~ 72 (138)
|...++.++..
T Consensus 107 ~L~~~i~~~l~~ 118 (137)
T d1ny5a1 107 EIELTINKAIEH 118 (137)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 78888887753
No 34
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.47 E-value=20 Score=21.31 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=22.4
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+....+..++++.+.+.+.|+++.|
T Consensus 29 v~~a~~~~~al~~l~~~~~dlii~D 53 (121)
T d1xhfa1 29 VFEATDGAEMHQILSEYDINLVIMD 53 (121)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEC
T ss_pred EEEECChHHHHHHHHhcCCCEEEee
Confidence 5677899999999999999999987
No 35
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=29.08 E-value=16 Score=21.80 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=22.3
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+....+..++++.+++.+.|+++.|
T Consensus 30 v~~a~~~~~a~~~l~~~~~dlii~D 54 (123)
T d1krwa_ 30 CTTFENGNEVLAALASKTPDVLLSD 54 (123)
T ss_dssp EEEESSSHHHHHHHTTCCCSEEEEC
T ss_pred EEEeCCHHHHHHHHHhCCCCEEEeh
Confidence 4567889999999999999999988
No 36
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.66 E-value=22 Score=21.15 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=22.3
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+....+..++++.+++.+-|+++.|
T Consensus 28 v~~a~~~~eal~~~~~~~~dlvl~D 52 (121)
T d1ys7a2 28 VATAVDGAEALRSATENRPDAIVLD 52 (121)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEE
T ss_pred EEEECCHHHHHHHHHhCCCCEEEEE
Confidence 4567899999999999999999987
No 37
>d1dpea_ c.94.1.1 (A:) Dipeptide-binding protein {Escherichia coli [TaxId: 562]}
Probab=27.02 E-value=13 Score=27.18 Aligned_cols=73 Identities=7% Similarity=-0.086 Sum_probs=40.0
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCeeeCCCCCcceeEEEEeCCC-hhH-HHHHHHHHHHhh
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFTTGPTYSVGGFGFAFPKDS-AYL-ADFSQAILQLSE 75 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~~~~~~~~~~~g~a~~Kgs-pl~-~~in~~l~~l~~ 75 (138)
++.+.+.....+++.+|++|......+........... ..+-.......+.+.+...+ |+. ..+-+||.....
T Consensus 216 ~~~~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~N~~~~~~~d~~vR~Al~~aid 290 (507)
T d1dpea_ 216 FSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKS-INLMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVN 290 (507)
T ss_dssp EEECCCHHHHHHHHHTTSCSBCSSCCGGGHHHHHHCTT-EEEEEEECSEEEEEEECTTSTTTTSHHHHHHHHHTSC
T ss_pred EecccccchhhhhhhhhhhccccCCCHHHHHHHhhccc-ccccccccceeeecccccCCCCCCCHHHHHHHHHHHh
Confidence 46778899999999999999876543332222233332 33111122344556665543 342 334555554444
No 38
>d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA) {Thermotoga maritima [TaxId: 2336]}
Probab=26.29 E-value=44 Score=24.58 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=21.9
Q ss_pred eecCCHHHHHHHHHcCCceEEEecHHHHH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLEVPYVK 31 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d~~~l~ 31 (138)
+.+.+.+..+++|++|++|.+-...+.+.
T Consensus 204 ~~~~~~~~~~~a~~~G~iD~~~~~~~~~~ 232 (535)
T d1vr5a1 204 LRVLSNNVAVGMLMKGELDWSNFFLPGVP 232 (535)
T ss_dssp ECCSCHHHHHHHHHHTSCCEECSCCTTHH
T ss_pred ccccccchhhhhhhccccceecccCchhh
Confidence 45778899999999999998655444333
No 39
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]}
Probab=26.20 E-value=11 Score=25.75 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=18.7
Q ss_pred ecCCHHHHHHHHHcCCceEEEec
Q 039381 4 PIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+|+++++++++|++|+.-.++.|
T Consensus 8 ~~~~ie~ai~alk~G~~Viv~Dd 30 (209)
T d1g57a_ 8 PFERVENALAALREGRGVMVLDD 30 (209)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEC-
T ss_pred chhhHHHHHHHHHCCCEEEEEEC
Confidence 46779999999999998777665
No 40
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=25.99 E-value=25 Score=20.82 Aligned_cols=25 Identities=4% Similarity=0.125 Sum_probs=22.2
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+....+..++++.++..+.|+++.|
T Consensus 28 v~~a~~~~~al~~l~~~~~dlillD 52 (122)
T d1kgsa2 28 VDVCYDGEEGMYMALNEPFDVVILD 52 (122)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEE
T ss_pred EEEEcchHHHHHHHHhhCccccccc
Confidence 4567889999999999999999987
No 41
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}
Probab=25.68 E-value=34 Score=22.91 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=19.4
Q ss_pred cCCHHHHHHHHHcCCceEEEecHH
Q 039381 5 IFSENRHRQALTSGEIAAAFLEVP 28 (138)
Q Consensus 5 ~~~~~e~~~aL~~G~vdA~i~d~~ 28 (138)
.++.++..++|.+|++|.......
T Consensus 33 ~~~p~~l~~al~~G~iDia~~~~~ 56 (277)
T d2nxoa1 33 KDTPEKLSEQLVRGDLDIGPVTLV 56 (277)
T ss_dssp EECHHHHHHHHHTTSCSEEEEEHH
T ss_pred ECCHHHHHHHHHcCCCCEEecCHH
Confidence 356788999999999998777644
No 42
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=25.17 E-value=20 Score=21.18 Aligned_cols=25 Identities=8% Similarity=0.187 Sum_probs=21.9
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+....+..++++.+++.+.|+++.|
T Consensus 27 v~~a~~~~eal~~~~~~~~dlillD 51 (117)
T d2a9pa1 27 VVTAFNGREALEQFEAEQPDIIILD 51 (117)
T ss_dssp EEEESSHHHHHHHHHHHCCSEEEEC
T ss_pred EEEECCHHHHHHHHHhcCCCEEEec
Confidence 4567889999999999999999987
No 43
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=24.61 E-value=20 Score=24.37 Aligned_cols=21 Identities=24% Similarity=0.291 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHcCCceEEEec
Q 039381 6 FSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 6 ~~~~e~~~aL~~G~vdA~i~d 26 (138)
|++++++++|++|+.-.++.|
T Consensus 1 d~ie~ai~~lk~G~~Viv~Dd 21 (219)
T d1snna_ 1 NNVEKAIEALKKGEIILVYDS 21 (219)
T ss_dssp CHHHHHHHHHHTTCCEEEECC
T ss_pred CCHHHHHHHHHCCCEEEEEeC
Confidence 578999999999998888775
No 44
>d1twya_ c.94.1.1 (A:) ABC transporter, periplasmic substrate-binding protein VCA0807 {Vibrio cholerae [TaxId: 666]}
Probab=24.30 E-value=19 Score=23.94 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=35.9
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCeeeCCCCCcceeEEEEeCCChh
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFTTGPTYSVGGFGFAFPKDSAY 62 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~~~~~~~~~~~g~a~~Kgspl 62 (138)
......+++.+|.+|++|..+..++.-. ++....+. ..++......|++++++|+
T Consensus 34 ~~~gS~~~~~~l~~g~~di~~~s~~~~~---~e~~~~~~-~~~ia~d~lviiv~~~np~ 88 (249)
T d1twya_ 34 QGVGSTAGISLLKKGVADIAMTSRYLTE---SEAQNTLH-TFTLAFDGLAIVVNQANPV 88 (249)
T ss_dssp EESCHHHHHHHHHTTSCSEEEESSCCCT---TTCCTTCE-EEEEEEEEEEEEECTTCCC
T ss_pred EeCCcHHHHHHHHcCCCeeeecccchhh---hhhhccee-eEEEEeecccccccccccc
Confidence 3456788999999999999988766311 11111122 1235567788999998873
No 45
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=23.46 E-value=22 Score=21.04 Aligned_cols=25 Identities=4% Similarity=-0.017 Sum_probs=22.0
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+....+..++++.+++.+.|+++.|
T Consensus 29 v~~a~~~~~al~~l~~~~~dlillD 53 (121)
T d1mvoa_ 29 VITASDGEEALKKAETEKPDLIVLD 53 (121)
T ss_dssp EEEESSHHHHHHHHHHHCCSEEEEE
T ss_pred EEEECCHHHHHHHHhcccccEEEec
Confidence 4567889999999999999999987
No 46
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.23 E-value=22 Score=21.01 Aligned_cols=25 Identities=8% Similarity=-0.040 Sum_probs=22.0
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+....+..++++.+++.+.|+++.|
T Consensus 27 v~~a~~~~eal~~l~~~~~dliilD 51 (119)
T d1zh2a1 27 VFEAETLQRGLLEAATRKPDLIILD 51 (119)
T ss_dssp EEEESSHHHHHHHHHHHCCSEEEEE
T ss_pred EEEeCCHHHHHHHHHhcCCCEEEec
Confidence 4567889999999999999999987
No 47
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]}
Probab=22.99 E-value=26 Score=24.67 Aligned_cols=71 Identities=10% Similarity=-0.038 Sum_probs=41.6
Q ss_pred HHHcCCceEEEecHHHH---HHHHHhcCCCeeeCCCC---------Cc-ceeEEEEeCCChhHHHHHHHHHHHhhcCcHH
Q 039381 14 ALTSGEIAAAFLEVPYV---KLFLAKNCKNFTTGPTY---------SV-GGFGFAFPKDSAYLADFSQAILQLSEEGKLR 80 (138)
Q Consensus 14 aL~~G~vdA~i~d~~~l---~~~~~~~~~~~~~~~~~---------~~-~~~g~a~~Kgspl~~~in~~l~~l~~~G~~~ 80 (138)
.|.--+++++|.-.-.. +......+- +.++... .. -+.|+.+.++..=.+.|.++|.++.++..++
T Consensus 332 lL~hp~~~~fItHGG~~s~~eal~~GvP~-v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~t~~~l~~ai~~vL~d~~y~ 410 (450)
T d2c1xa1 332 VLAHEAVGAFVTHCGWNSLWESVAGGVPL-ICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKGK 410 (450)
T ss_dssp HHTSTTEEEEEECCCHHHHHHHHHHTCCE-EECCCSTTHHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSHHHH
T ss_pred hhccCceeEEEccCCccHHHHHHHcCCCE-EecccccchHHHHHHHHHHcCcEEEecCCCcCHHHHHHHHHHHhcCcHHH
Confidence 34457889998753322 222222231 2233221 12 2677777777666788999999998888776
Q ss_pred HHHHH
Q 039381 81 ELEEA 85 (138)
Q Consensus 81 ~l~~k 85 (138)
+..+|
T Consensus 411 ~~~~r 415 (450)
T d2c1xa1 411 KLREN 415 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 48
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}
Probab=22.60 E-value=32 Score=20.22 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=22.2
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+....+..+++..+++.+-|.++.|
T Consensus 27 v~~a~~g~eal~~l~~~~~dliilD 51 (119)
T d2pl1a1 27 VDDAEDAKEADYYLNEHIPDIAIVD 51 (119)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEC
T ss_pred EEEECCHHHHHHHHHhcccceeehh
Confidence 4567889999999999999999988
No 49
>d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]}
Probab=22.51 E-value=37 Score=20.81 Aligned_cols=69 Identities=9% Similarity=0.023 Sum_probs=41.5
Q ss_pred ecCCHHHHHHHHHcCCceEEEecHHHHHHHHHhcCCCee-eC--CCCCcceeEEEEeCCChhHHHHHHHHHHHhh
Q 039381 4 PIFSENRHRQALTSGEIAAAFLEVPYVKLFLAKNCKNFT-TG--PTYSVGGFGFAFPKDSAYLADFSQAILQLSE 75 (138)
Q Consensus 4 ~~~~~~e~~~aL~~G~vdA~i~d~~~l~~~~~~~~~~~~-~~--~~~~~~~~g~a~~Kgspl~~~in~~l~~l~~ 75 (138)
..++...+.+.+++|.--+++-+..+-.. .. .. .+. +. .+...-.++++.+|+.++...+...+.-+++
T Consensus 134 ~~~~~~~~~~~v~~g~Gia~lp~~~~~~~-~~-~~-~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~lr~ 205 (212)
T d1i6aa_ 134 RATSLETLRNMVAAGSGITLLPALAVPPE-RK-RD-GVVYLPAIKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRA 205 (212)
T ss_dssp TTSCHHHHHHHHHTTSCBEEEEGGGSCSS-SE-ET-TEEEECEESSCCEEEEEEEECTTCTTHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHcCCccccchHHHHHhh-hc-cc-eEEEEecCCCCceeEEEEEEECcCccCHHHHHHHHHHHH
Confidence 35677778888899988888766432111 11 12 244 32 2233346788889998776666655554443
No 50
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=22.11 E-value=24 Score=20.87 Aligned_cols=25 Identities=8% Similarity=-0.043 Sum_probs=21.5
Q ss_pred eeecCCHHHHHHHHHcCCceEEEec
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLE 26 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d 26 (138)
+....+..++++.+++.+.|.++.|
T Consensus 28 v~~a~~g~eal~~~~~~~~dlillD 52 (119)
T d1peya_ 28 TFQAANGLQALDIVTKERPDLVLLD 52 (119)
T ss_dssp EEEESSHHHHHHHHHHHCCSEEEEE
T ss_pred EEEeCCHHHHHHHHHhCCCCEEEEe
Confidence 4567788999999999999999987
No 51
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}
Probab=22.07 E-value=33 Score=20.32 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=42.5
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH--H------HHHHHHHhcCC-Cee--eCCCC--------CcceeEEEEeCCCh-
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV--P------YVKLFLAKNCK-NFT--TGPTY--------SVGGFGFAFPKDSA- 61 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~--~------~l~~~~~~~~~-~~~--~~~~~--------~~~~~g~a~~Kgsp- 61 (138)
+....+.+++++.+.+.+.|.++.|. | .+....+..+. .+- .+..- .....++..++=++
T Consensus 30 v~~a~~~~~al~~~~~~~~dlvi~D~~mp~~~G~e~~~~lr~~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~ 109 (123)
T d1dbwa_ 30 VKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDT 109 (123)
T ss_dssp EEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred EEEECCHHHHHHHHhhcCCcEEEEeccCccccchHHHHHHHhcCCCCeEEEEEeeCCHHHHHHHHHCCCCEEEECCCCHH
Confidence 45678899999999999999999873 2 22232222332 222 33321 12235566554443
Q ss_pred -hHHHHHHHHHHH
Q 039381 62 -YLADFSQAILQL 73 (138)
Q Consensus 62 -l~~~in~~l~~l 73 (138)
|...|+++++.+
T Consensus 110 ~L~~~i~~a~e~l 122 (123)
T d1dbwa_ 110 VIIEAIERASEHL 122 (123)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhh
Confidence 777777776543
No 52
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=22.07 E-value=25 Score=20.80 Aligned_cols=26 Identities=0% Similarity=-0.109 Sum_probs=22.1
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV 27 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~ 27 (138)
+....+..++++.+++.+-|+++.|.
T Consensus 28 v~~a~~~~~al~~~~~~~~dlil~D~ 53 (123)
T d1mb3a_ 28 TLQTREGLSALSIARENKPDLILMDI 53 (123)
T ss_dssp EEEESCHHHHHHHHHHHCCSEEEEES
T ss_pred EEEECCHHHHHHHHHhCCCCEEEEEe
Confidence 45678899999999999999999873
No 53
>d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia enterocolitica, YfuA [TaxId: 630]}
Probab=21.72 E-value=1.1e+02 Score=20.43 Aligned_cols=83 Identities=7% Similarity=-0.056 Sum_probs=44.8
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecHH-HHHHHHHhc--CCCee---eCCCCC---cceeEEEEeCCChhHHHHHHHHHH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEVP-YVKLFLAKN--CKNFT---TGPTYS---VGGFGFAFPKDSAYLADFSQAILQ 72 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~~-~l~~~~~~~--~~~~~---~~~~~~---~~~~g~a~~Kgspl~~~in~~l~~ 72 (138)
+..+.+..+..+++.+|++++.+.-.. ......... ..... ....-. ....+++++|++|..+.-.+.|.=
T Consensus 171 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~I~k~s~n~~~A~~Fi~f 250 (311)
T d1xvxa_ 171 FTAYKGNSTVMKAVNAGQIDGGVIYHYYRFVDQAKTGENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPKEAQEFVKW 250 (311)
T ss_dssp EEECSSHHHHHHHHHTTSSSEEEEETHHHHHHHTTTCTTTTTCEEECCCTTCGGGCEEEEEEEEBTTCSSHHHHHHHHHH
T ss_pred ccccccchHhhhhhhCCCcccccchhhHHHHHHHHhhhccccceeeccccCCCCceeeeeeeeeecCCCCHHHHHHHHHH
Confidence 345677888999999999997765432 222211111 11122 111111 123578999999876666665544
Q ss_pred HhhcCcHHHHHHH
Q 039381 73 LSEEGKLRELEEA 85 (138)
Q Consensus 73 l~~~G~~~~l~~k 85 (138)
|.. .+-+++..+
T Consensus 251 l~s-~e~Q~~~~~ 262 (311)
T d1xvxa_ 251 ITG-KSGQDILRT 262 (311)
T ss_dssp HHS-HHHHHHHHH
T ss_pred HcC-HHHHHHHHh
Confidence 443 333444443
No 54
>d2hhma_ e.7.1.1 (A:) Inositol monophosphatase {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.10 E-value=71 Score=21.35 Aligned_cols=68 Identities=9% Similarity=0.090 Sum_probs=35.0
Q ss_pred eecCCHHHHHHHHHcCCceEEEec------HHHHHHHHHhcCCCee--eCCCCCcceeEEEEeCCChhHHHHHHHH
Q 039381 3 EPIFSENRHRQALTSGEIAAAFLE------VPYVKLFLAKNCKNFT--TGPTYSVGGFGFAFPKDSAYLADFSQAI 70 (138)
Q Consensus 3 ~~~~~~~e~~~aL~~G~vdA~i~d------~~~l~~~~~~~~~~~~--~~~~~~~~~~g~a~~Kgspl~~~in~~l 70 (138)
+.+-+..--+..|..|++|+++.. .......++.-+..++ -|.++....=++.+.-+.-+.+.|-+.|
T Consensus 187 r~~Gs~~l~~~~va~G~~d~~v~~~~~~wD~aAg~li~~eaGg~vtd~~G~~~~~~~~~ii~a~~~~~~~~l~~~l 262 (272)
T d2hhma_ 187 RSVGTAAVNMCLVATGGADAYYEMGIHCWDVAGAGIIVTEAGGVLMDVTGGPFDLMSRRVIAANNRILAERIAKEI 262 (272)
T ss_dssp EBCSCHHHHHHHHHHTSSSEEEEESCCHHHHHHHHHHHHHTTCEEECTTSSCCCTTSSEEEEESSHHHHHHHHHHC
T ss_pred eeechHHHHHHHhccCCeeEEeecCCChhhhHHHHHHHHHCCCeEECCCCCccCCCCCcEEEECCHHHHHHHHHHh
Confidence 344455556677889999999953 2333334444444355 4555543333444432222444444433
No 55
>d1r9la_ c.94.1.1 (A:) Glycine betaine-binding periplasmic protein ProX {Escherichia coli [TaxId: 562]}
Probab=20.44 E-value=42 Score=22.78 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=34.0
Q ss_pred CHHHHHHHHHcCCceEEEec-HHHHHHHHHh-c-CCCee-eCCCCCcceeEEEEeCC
Q 039381 7 SENRHRQALTSGEIAAAFLE-VPYVKLFLAK-N-CKNFT-TGPTYSVGGFGFAFPKD 59 (138)
Q Consensus 7 ~~~e~~~aL~~G~vdA~i~d-~~~l~~~~~~-~-~~~~~-~~~~~~~~~~g~a~~Kg 59 (138)
+...++++|.+|++|++..- .+.......+ . ..... ++........++++|+.
T Consensus 45 ~~~~~~~al~~GdiDv~~Eyw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~ 101 (309)
T d1r9la_ 45 DYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKK 101 (309)
T ss_dssp CHHHHHHHHHHTSSCEEEEEEETTTHHHHHHTTGGGTEEECSCSEEEEEEEEEEEHH
T ss_pred ChHHHHHHHHcCCCeEEEeeecchhhhhhhhhccccceEEecccchhhhhhhhcccc
Confidence 56778999999999998764 2333322232 2 22355 66655566778888764
No 56
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.15 E-value=38 Score=19.74 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=21.9
Q ss_pred eeecCCHHHHHHHHHcCCceEEEecH
Q 039381 2 IEPIFSENRHRQALTSGEIAAAFLEV 27 (138)
Q Consensus 2 i~~~~~~~e~~~aL~~G~vdA~i~d~ 27 (138)
+....+..++.+.+++.+.|+++.|.
T Consensus 28 v~~a~~~~~a~~~~~~~~~dliilD~ 53 (120)
T d1zgza1 28 VSVTASGAGLREIMQNQSVDLILLDI 53 (120)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEES
T ss_pred EEEECCHHHHHHHHHhcCCCEEeeeh
Confidence 45677889999999999999999873
Done!