BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039384
(104 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S2T1|DDPS6_ARATH Dehydrodolichyl diphosphate synthase 6 OS=Arabidopsis thaliana
GN=At2g17570 PE=2 SV=2
Length = 295
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 42/49 (85%)
Query: 47 KLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
+LVD+E++M M+VAP+PDI IRSSGETR SNFLLWQT N L SPAALW
Sbjct: 218 QLVDIEENMQMSVAPNPDILIRSSGETRLSNFLLWQTGNTQLCSPAALW 266
>sp|Q8W3U4|HRT2_HEVBR Rubber cis-polyprenyltransferase HRT2 OS=Hevea brasiliensis GN=HRT2
PE=1 SV=1
Length = 284
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 24 EYCEDKLDGSQALK-EKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQ 82
E C D +G +K E+++ + KLV++E++ + + P PD+ IR+SGETR SN+LLWQ
Sbjct: 185 EICNDG-NGDCVIKIEEMEPYSEIKLVELERNTY--INPYPDVLIRTSGETRLSNYLLWQ 241
Query: 83 TSNCSLYSPAALWLE 97
T+NC LYSP ALW E
Sbjct: 242 TTNCILYSPHALWPE 256
>sp|Q8RA26|ISPT_THETN Isoprenyl transferase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=uppS PE=3
SV=1
Length = 247
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Query: 19 VPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNF 78
V Q C+ L+ + E I EDTI + H++ A PDPD+ IR+SGE R SNF
Sbjct: 153 VKATQNICKKVLN-RELSPEDITEDTITQ------HLYTASQPDPDLIIRTSGEKRLSNF 205
Query: 79 LLWQTSNCSLYSPAALWLEEKKK 101
LLWQ++ L+ LW + KK+
Sbjct: 206 LLWQSAYSELWFTEVLWPDFKKR 228
>sp|P20182|ISPT_STRFR Isoprenyl transferase OS=Streptomyces fradiae GN=uppS PE=3 SV=2
Length = 259
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 34 QALKEKIDEDTIKKLV--DVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSP 91
QA ED L D+ +H++ A PDPD+ IR+SGE R SNFLLWQ++ LY
Sbjct: 172 QAAAGTTLEDLAASLTMDDITRHLYTAGQPDPDLVIRTSGEQRMSNFLLWQSAYSELYFC 231
Query: 92 AALW 95
A W
Sbjct: 232 EAYW 235
>sp|O87197|ISPT_THET2 Isoprenyl transferase OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=uppS PE=3 SV=1
Length = 263
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 50 DVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALWLEEKK 100
D+ +H++ A PDPD IR+SGE R S FLLWQ++ Y LW E +K
Sbjct: 194 DIARHLYTAGLPDPDFIIRTSGEIRLSGFLLWQSAYSEFYFADVLWPEFRK 244
>sp|Q5SH15|ISPT_THET8 Isoprenyl transferase OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=uppS PE=3 SV=1
Length = 263
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 50 DVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALWLEEKK 100
D+ +H++ A PDPD IR+SGE R S FLLWQ++ Y LW E +K
Sbjct: 194 DIARHLYTAGLPDPDFIIRTSGEIRLSGFLLWQSAYSEFYFADVLWPEFRK 244
>sp|Q9K1G6|ISPT_NEIMB Isoprenyl transferase OS=Neisseria meningitidis serogroup B (strain
MC58) GN=uppS PE=3 SV=1
Length = 248
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 39 KIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
+I EDT+ K H+ + AP+PD+ IR+ GETR SNFLLWQ + LY LW
Sbjct: 162 EITEDTLAK------HLMLGDAPEPDLFIRTGGETRISNFLLWQMAYAELYFTDILW 212
>sp|Q5F5X2|ISPT_NEIG1 Isoprenyl transferase OS=Neisseria gonorrhoeae (strain ATCC 700825
/ FA 1090) GN=uppS PE=3 SV=1
Length = 248
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 39 KIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
+I EDT+ K H+ + AP+PD+ IR+ GETR SNFLLWQ + LY LW
Sbjct: 162 EITEDTLAK------HLMLGDAPEPDLFIRTGGETRISNFLLWQMAYAELYFTDILW 212
>sp|Q9KPV6|UPPS_VIBCH Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=uppS PE=3 SV=2
Length = 250
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 16/80 (20%)
Query: 28 DKLDGSQALKEK----------IDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSN 77
D L +QAL EK IDED K+ H+ MA PD D+ IR+SGE R SN
Sbjct: 144 DILQATQALAEKVTQGELQPSDIDEDVFKQ------HLTMADLPDVDLLIRTSGECRISN 197
Query: 78 FLLWQTSNCSLYSPAALWLE 97
F+LWQ + +Y W E
Sbjct: 198 FMLWQLAYAEMYFTPVFWPE 217
>sp|Q82TZ9|ISPT_NITEU Isoprenyl transferase OS=Nitrosomonas europaea (strain ATCC 19718 /
NBRC 14298) GN=uppS PE=3 SV=1
Length = 263
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 29 KLDGSQALKEKIDEDTIKKLV----DVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTS 84
+ D QA+++ I E+ + D+ +H+ +A AP+PD+ IR+ GE R SNFLLWQ +
Sbjct: 148 RWDIMQAVRKMITENPDSAVTFDEPDIARHLALADAPEPDLFIRTGGECRISNFLLWQLA 207
Query: 85 NCSLYSPAALW 95
LY LW
Sbjct: 208 YTELYFTDTLW 218
>sp|Q8DI29|ISPT_THEEB Isoprenyl transferase OS=Thermosynechococcus elongatus (strain
BP-1) GN=uppS PE=3 SV=1
Length = 251
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 49 VDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
V E+H++ PDPD+ IR+SGE R SNF LWQ + +Y LW
Sbjct: 180 VLFERHLYTGGLPDPDLLIRTSGELRISNFFLWQVAYAEIYVTKTLW 226
>sp|Q9JX35|ISPT_NEIMA Isoprenyl transferase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=uppS PE=3 SV=1
Length = 248
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 39 KIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
+I EDT+ K ++ + AP+PD+ IR+ GETR SNFLLWQ + LY LW
Sbjct: 162 EITEDTLAK------YLMLGDAPEPDLFIRTGGETRISNFLLWQMAYAELYFTDILW 212
>sp|Q8LAR7|DDPS8_ARATH Dehydrodolichyl diphosphate synthase 8 OS=Arabidopsis thaliana
GN=At5g60510 PE=2 SV=2
Length = 272
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 10/65 (15%)
Query: 31 DGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYS 90
DGS AL+ L D+E+ M+ +V P PD+ +R+ G R SNF+ WQTS L+
Sbjct: 189 DGSSALE----------LSDIEECMYTSVVPVPDLVVRTGGGDRLSNFMTWQTSRALLHR 238
Query: 91 PAALW 95
ALW
Sbjct: 239 TEALW 243
>sp|Q47SS3|ZFPP_THEFY (2Z,6E)-farnesyl diphosphate synthase OS=Thermobifida fusca (strain
YX) GN=Tfu_0456 PE=1 SV=1
Length = 254
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 34 QALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAA 93
+ L E++D D D+ KH++ PDPD+ IR+SGE R S FLLWQ+++ Y
Sbjct: 175 EELAERLDLD------DIAKHLYTRGQPDPDLLIRTSGEQRLSGFLLWQSAHSEFYFCEV 228
Query: 94 LW 95
W
Sbjct: 229 FW 230
>sp|Q8LED0|DDPS7_ARATH Dehydrodolichyl diphosphate synthase 7 OS=Arabidopsis thaliana
GN=At5g60500 PE=2 SV=1
Length = 271
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 41 DEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
D+ + +L DVE+ M+ ++ P PD+ IR+ G R SNF+ WQTS L+ ALW
Sbjct: 188 DDLVLLELSDVEECMYTSIVPVPDLVIRTGGGDRLSNFMTWQTSRSLLHRTEALW 242
>sp|P58563|ISPT1_NOSS1 Isoprenyl transferase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=uppS1 PE=3 SV=1
Length = 249
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 27 EDKLDGSQALKEKIDE-----DTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLW 81
++ L +A+ +K+ + D I + V E+H++ A DPD+ IR+SGE R SNFLLW
Sbjct: 152 QEILQACRAIAQKVQQGLLQPDEINEEV-FERHLYTAGISDPDLLIRTSGEMRLSNFLLW 210
Query: 82 QTSNCSLYSPAALW 95
Q + +Y LW
Sbjct: 211 QMAYGEIYITDTLW 224
>sp|Q9ZEJ7|ISPT_ANAVT Isoprenyl transferase OS=Anabaena variabilis (strain ATCC 29413 /
PCC 7937) GN=uppS PE=3 SV=2
Length = 249
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 38 EKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
++IDE+ E+H++ A DPD+ IR+SGE R SNFLLWQ + +Y LW
Sbjct: 173 DEIDEEVF------ERHLYTAGIADPDLLIRTSGEMRLSNFLLWQMAYGEIYITDTLW 224
>sp|Q8CPG7|ISPT_STAES Isoprenyl transferase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=uppS PE=3 SV=1
Length = 256
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 25 YCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTS 84
Y E +L+G + E IDE IK+ H+ PDPD+ IR+SGE R SNFL+WQ S
Sbjct: 166 YNELQLNGQGS--EVIDEALIKR------HLMTHSYPDPDLLIRTSGEQRISNFLIWQAS 217
Query: 85 NCSLYSPAALW--LEEKKKRQ 103
LW +EK+ R+
Sbjct: 218 YSEFIFNEKLWPDFDEKELRE 238
>sp|Q5HPT1|ISPT_STAEQ Isoprenyl transferase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=uppS PE=3 SV=1
Length = 256
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 25 YCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTS 84
Y E +L+G + E IDE IK+ H+ PDPD+ IR+SGE R SNFL+WQ S
Sbjct: 166 YNELQLNGQGS--EVIDEALIKR------HLMTHSYPDPDLLIRTSGEQRISNFLIWQAS 217
Query: 85 NCSLYSPAALW--LEEKKKRQ 103
LW +EK+ R+
Sbjct: 218 YSEFIFNEKLWPDFDEKELRE 238
>sp|Q9X1B8|ISPT_THEMA Isoprenyl transferase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=uppS PE=3 SV=1
Length = 233
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 31 DGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYS 90
D S K ++ E+T ++ ++++ PDPD+ IR+SGE R SNFLLWQ++ LY
Sbjct: 147 DVSHGKKIELTEETFRQ------YLYLPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYF 200
Query: 91 PAALW 95
LW
Sbjct: 201 FKKLW 205
>sp|Q82IC1|ISPT1_STRAW Isoprenyl transferase 1 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=uppS1 PE=3 SV=1
Length = 257
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 36 LKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
L + +D D I K H++ PDPD+ IR+SGE R S F+LWQT++ Y W
Sbjct: 180 LADAVDVDLIGK------HLYTGAQPDPDLVIRTSGEQRLSGFMLWQTAHSEYYFCEVFW 233
>sp|Q55482|ISPT_SYNY3 Isoprenyl transferase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=uppS PE=3 SV=1
Length = 249
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 39 KIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
K+D +TI + V VEK+++ PD+ IR+SGE R SNFLLWQ + +Y + LW
Sbjct: 169 KLDPETIDEGV-VEKYLYTEGLSHPDLLIRTSGELRISNFLLWQMAYAEIYVTSTLW 224
>sp|O67291|ISPT_AQUAE Isoprenyl transferase OS=Aquifex aeolicus (strain VF5) GN=uppS PE=3
SV=1
Length = 231
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 39 KIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
K+DE+T + +D ++ +PDPD+ IR++GE R SNFLLW + LY LW
Sbjct: 153 KLDEETFSQFLD------LSCSPDPDLLIRTAGEKRISNFLLWNLAYTELYFTDTLW 203
>sp|Q58767|UPPS_METJA Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific)
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=uppS PE=3
SV=1
Length = 280
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 10/74 (13%)
Query: 30 LDGSQALKEKID------EDTIKKLVDVEKHMFMAVAP--DPDITIRSSGETRPSNFLLW 81
+D + + EK+ ED K+L+D KH++ A P +PD+ IR+SGE R SNFL+W
Sbjct: 185 IDAVKKIAEKVKRGEIEPEDIDKELID--KHLYTANLPFPNPDLIIRTSGEERISNFLIW 242
Query: 82 QTSNCSLYSPAALW 95
Q+S LY W
Sbjct: 243 QSSYSELYFCDIYW 256
>sp|O26334|UPPS_METTH Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific)
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=uppS PE=3 SV=1
Length = 255
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 31 DGSQAL---KEKIDEDTIKKLVD--------VEKHMFMAVAPDPDITIRSSGETRPSNFL 79
DG Q + KI ED L+D + ++++ A DP + IR+SGE R S FL
Sbjct: 156 DGRQEIVDATRKIAEDVKAGLIDPEDIDEDMINRNLYTAGLEDPHLIIRTSGEERLSGFL 215
Query: 80 LWQTSNCSLYSPAALWLEEKK 100
LWQ+S LY +LW E +K
Sbjct: 216 LWQSSYSELYFCDSLWPELRK 236
>sp|Q8GLK9|ISPT_AQUPY Isoprenyl transferase OS=Aquifex pyrophilus GN=uppS PE=3 SV=1
Length = 231
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 37 KEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
+E+I E+ L+D ++ +PDPD+ IR++GE R SNFLLW + LY LW
Sbjct: 151 REEITEELFSSLLD------LSCSPDPDLLIRTAGEKRISNFLLWNLAYTELYFSETLW 203
>sp|Q9HKQ0|UPPS_THEAC Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=uppS PE=3 SV=1
Length = 258
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 22 VQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLW 81
++ D +DG + E +DE+ + +++ PDPD+ +R+SGE R SNFLLW
Sbjct: 168 IKRITRDAMDGKLNIDE-LDEEKFRM------YLYDGRIPDPDLILRTSGEERISNFLLW 220
Query: 82 QTSNCSLYSPAALWLEEKK 100
Q++ LY W E K
Sbjct: 221 QSAYSELYFSDVYWPEFSK 239
>sp|Q9V157|UPPS_PYRAB Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Pyrococcus
abyssi (strain GE5 / Orsay) GN=uppS PE=3 SV=1
Length = 264
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 19 VPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNF 78
V V++ D +DG + E IDE+ +KK ++++ PDPDI IR+ GE R SNF
Sbjct: 171 VDAVKDIVRDVMDGKLRV-EDIDEELLKK------YLYVPNMPDPDIVIRTGGEVRISNF 223
Query: 79 LLWQTSNCSLY 89
LL+Q + L+
Sbjct: 224 LLYQIAYSELF 234
>sp|Q6KZ89|UPPS_PICTO Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Picrophilus
torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 /
NBRC 100828) GN=uppS PE=3 SV=1
Length = 255
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 32 GSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSP 91
G L KI D I + + +++ PDPD+ +R+SGE R SNFLLWQ++ LY
Sbjct: 169 GQDILNGKIKVDNINEEM-FRSYLYDKTLPDPDLILRTSGEERISNFLLWQSAYSELYFA 227
Query: 92 AALWLEEKK 100
W E +K
Sbjct: 228 DVNWPELRK 236
>sp|Q83BV5|UPPS_COXBU Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=uppS
PE=3 SV=1
Length = 237
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 28 DKLDGSQALKEKI-DEDTIKKLVDVE---KHMFMAVAPDPDITIRSSGETRPSNFLLWQT 83
D L Q + EKI +++ +L+ E ++ ++ P+PD+ IR+SGE R SNF+LWQ
Sbjct: 135 DILQAVQRMAEKIKNQELTSELMSAELFQNYLCLSDLPEPDLLIRTSGEQRLSNFMLWQF 194
Query: 84 SNCSLYSPAALW 95
+ +Y ALW
Sbjct: 195 AYTEIYFTPALW 206
>sp|Q8TXA7|UPPS_METKA Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=uppS PE=3 SV=1
Length = 271
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 38 EKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALWLE 97
++IDE T +K V ++ PDP++ IR+SGE R SNFLLW ++ LY W E
Sbjct: 196 DEIDEGTFRKYV------YVGDLPDPELIIRTSGEERLSNFLLWYSAYSELYFVDVYWPE 249
Query: 98 EKK 100
+K
Sbjct: 250 FRK 252
>sp|Q570Q8|DDPS5_ARATH Dehydrodolichyl diphosphate synthase 5 OS=Arabidopsis thaliana
GN=At5g58784 PE=2 SV=2
Length = 302
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 61 PDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
P+PD+ IR+SGE R SNF LWQ++ LY P LW
Sbjct: 242 PNPDLLIRTSGEQRISNFFLWQSAYTELYFPTVLW 276
>sp|Q5JGE1|UPPS_PYRKO Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=uppS PE=3 SV=1
Length = 264
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 22 VQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLW 81
V+E D L+G + E IDE+ IK+ +++ PDPDI IR+ GE R SNFLL+
Sbjct: 174 VREIVRDVLEG-KIKPEDIDEEAIKR------YLYYPNMPDPDIVIRTGGEVRISNFLLY 226
Query: 82 QTSNCSLY 89
Q + L+
Sbjct: 227 QIAYSELF 234
>sp|Q8RE08|ISPT_FUSNN Isoprenyl transferase OS=Fusobacterium nucleatum subsp. nucleatum
(strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
GN=uppS PE=3 SV=1
Length = 230
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 37 KEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
KE I E+ D K+++ PDPD+ IR+SGE R SNFLLWQ + LY LW
Sbjct: 151 KENITEE------DFSKYLYNDF-PDPDLVIRTSGEMRISNFLLWQIAYSELYITDVLW 202
>sp|P60480|ISPT1_CORDI Isoprenyl transferase 1 OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=uppS1 PE=3 SV=1
Length = 265
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 38 EKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
EKI D+I K H++ + PDPD+ IR+SGE R S FLLWQ + ++ W
Sbjct: 190 EKISVDSISK------HLYTSGQPDPDLVIRTSGEQRLSGFLLWQAAYSEIWFTDTYW 241
>sp|Q97B58|UPPS_THEVO Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=uppS PE=3 SV=1
Length = 258
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 35 ALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAAL 94
A+ KI+ D I + +++ PDPD+ +R+SGE R SNFLLWQ++ LY
Sbjct: 175 AIAGKINVDEIDE-SKFRNYLYDGNLPDPDLILRTSGEERISNFLLWQSAYSELYFSDVY 233
Query: 95 WLEEKK 100
W E K
Sbjct: 234 WPEFSK 239
>sp|Q7MIG4|UPPS_VIBVY Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Vibrio
vulnificus (strain YJ016) GN=uppS PE=3 SV=1
Length = 251
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 38 EKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
E I ED D+ KH+ M+ P+ D+ IR+SGE R SNF+LWQ + +Y W
Sbjct: 164 EDITED------DIAKHLTMSDLPEVDLLIRTSGECRISNFMLWQMAYAEMYFTPVFW 215
>sp|Q8DBF7|UPPS_VIBVU Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Vibrio
vulnificus (strain CMCP6) GN=uppS PE=3 SV=1
Length = 251
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 38 EKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
E I ED D+ KH+ M+ P+ D+ IR+SGE R SNF+LWQ + +Y W
Sbjct: 164 EDITED------DIAKHLTMSDLPEVDLLIRTSGECRISNFMLWQMAYAEMYFTPVFW 215
>sp|Q8U0I8|UPPS_PYRFU Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=uppS PE=3 SV=1
Length = 264
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 19 VPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNF 78
V +++ D L+G L E I+E+ ++K ++++ PDPDI IR+ GE R SNF
Sbjct: 171 VDAIKDIVNDVLEGRLKL-EDINEEIVRK------YLYVPNMPDPDIVIRTGGEVRISNF 223
Query: 79 LLWQTSNCSLY 89
LL+Q + L+
Sbjct: 224 LLYQIAYSELF 234
>sp|Q7NVZ0|ISPT_CHRVO Isoprenyl transferase OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=uppS PE=3 SV=1
Length = 251
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%)
Query: 51 VEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
V + MA AP+PD+ IR+ GE R SNFLLWQ + LY LW
Sbjct: 169 VTDRLGMAWAPEPDLFIRTGGEQRISNFLLWQLAYSELYFTDLLW 213
>sp|Q824H0|ISPT_CHLCV Isoprenyl transferase OS=Chlamydophila caviae (strain GPIC) GN=uppS
PE=3 SV=1
Length = 250
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 36 LKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
+++KI D+I + + + ++ + PDPD+ IR+ GE R SNFLLWQ + LY LW
Sbjct: 168 VEQKISSDSISEEL-IRLYLDTSEMPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDILW 226
>sp|Q7VYC6|ISPT_BORPE Isoprenyl transferase OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=uppS PE=3 SV=1
Length = 254
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 38 EKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
++IDE + + H+ MA AP+PD+ IR+ GE R SNFL+WQ + Y W
Sbjct: 168 DRIDEARLAE------HLSMAWAPEPDLFIRTGGEQRISNFLVWQLAYAEFYFTEQFW 219
>sp|Q7WA56|ISPT_BORPA Isoprenyl transferase OS=Bordetella parapertussis (strain 12822 /
ATCC BAA-587 / NCTC 13253) GN=uppS PE=3 SV=2
Length = 254
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 38 EKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
++IDE + + H+ MA AP+PD+ IR+ GE R SNFL+WQ + Y W
Sbjct: 168 DRIDEARLAE------HLSMAWAPEPDLFIRTGGEQRISNFLVWQLAYAEFYFTEQFW 219
>sp|Q7WJ90|ISPT_BORBR Isoprenyl transferase OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=uppS PE=3 SV=2
Length = 254
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 38 EKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
++IDE + + H+ MA AP+PD+ IR+ GE R SNFL+WQ + Y W
Sbjct: 168 DRIDEARLAE------HLSMAWAPEPDLFIRTGGEQRISNFLVWQLAYAEFYFTEQFW 219
>sp|Q7U0P8|ZFPP_MYCBO Short-chain Z-isoprenyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb1115 PE=3 SV=1
Length = 262
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 30 LDGSQAL--KEKIDEDTIKKLVD------VEKHMFMAVAPDPDITIRSSGETRPSNFLLW 81
+D +AL KE + T ++LVD + ++++ + PDPD+ IR+SGE R S FLLW
Sbjct: 165 VDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLW 224
Query: 82 QTSNCSLYSPAALW 95
Q++ ++ A W
Sbjct: 225 QSAYSEMWFTEAHW 238
>sp|O53434|ZFPP_MYCTU (2Z,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv1086 PE=1 SV=1
Length = 262
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 30 LDGSQAL--KEKIDEDTIKKLVD------VEKHMFMAVAPDPDITIRSSGETRPSNFLLW 81
+D +AL KE + T ++LVD + ++++ + PDPD+ IR+SGE R S FLLW
Sbjct: 165 VDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLW 224
Query: 82 QTSNCSLYSPAALW 95
Q++ ++ A W
Sbjct: 225 QSAYSEMWFTEAHW 238
>sp|Q8GDY3|ISPT_HELMO Isoprenyl transferase OS=Heliobacillus mobilis GN=uppS PE=3 SV=1
Length = 260
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 35 ALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAAL 94
A + K++ D I + + ++++ A PDPD+ IR SGE R SNFLLWQ++ ++ L
Sbjct: 174 AAEGKVNPDQIDEKY-MSQYLYTADVPDPDLLIRPSGELRLSNFLLWQSAYTEIWVTPTL 232
Query: 95 WLEEKKK 101
W + +K
Sbjct: 233 WPDFGRK 239
>sp|P44938|UPPS_HAEIN Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=uppS PE=3 SV=1
Length = 239
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 11 KINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDV-----EKHMFMAVAPDPDI 65
K +L L + C D + ++ + EK+ ++ + + D+ + H+ AP D+
Sbjct: 125 KNTALTLNIAANYGGCWDIIQAAKQIAEKVKKEEMS-VSDINNSTFQHHLATQNAPPVDL 183
Query: 66 TIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
IR+SGE R SNFLLWQ + LY LW
Sbjct: 184 LIRTSGEQRISNFLLWQIAYAELYFSDVLW 213
>sp|Q8F144|ISPT_LEPIN Isoprenyl transferase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=uppS
PE=3 SV=1
Length = 241
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 50 DVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
+ EK ++ ++ P D+ IR++GE R SNFLLWQ++ LY LW
Sbjct: 168 EFEKFLYTSILPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLW 213
>sp|Q72U10|ISPT_LEPIC Isoprenyl transferase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=uppS PE=3 SV=1
Length = 241
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 50 DVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALW 95
+ EK ++ ++ P D+ IR++GE R SNFLLWQ++ LY LW
Sbjct: 168 EFEKFLYTSILPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLW 213
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,737,555
Number of Sequences: 539616
Number of extensions: 1555282
Number of successful extensions: 3076
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2854
Number of HSP's gapped (non-prelim): 232
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)