Query 039384
Match_columns 104
No_of_seqs 143 out of 1049
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 09:07:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00055 uppS undecaprenyl di 100.0 2.7E-43 5.9E-48 269.2 8.5 90 7-103 122-211 (226)
2 COG0020 UppS Undecaprenyl pyro 100.0 1.4E-42 3.1E-47 267.8 7.1 91 7-104 139-229 (245)
3 PRK14832 undecaprenyl pyrophos 100.0 5.9E-42 1.3E-46 265.4 7.8 90 7-103 141-230 (253)
4 PRK14842 undecaprenyl pyrophos 100.0 1.5E-41 3.3E-46 261.6 8.9 91 7-103 131-221 (241)
5 PRK14838 undecaprenyl pyrophos 100.0 1.5E-41 3.3E-46 261.6 8.3 90 7-103 131-220 (242)
6 PRK14836 undecaprenyl pyrophos 100.0 1.2E-41 2.7E-46 263.5 7.9 90 7-103 137-226 (253)
7 PRK14837 undecaprenyl pyrophos 100.0 1.7E-41 3.7E-46 259.9 7.7 86 7-103 129-214 (230)
8 PRK14831 undecaprenyl pyrophos 100.0 2.3E-41 5E-46 261.4 8.4 90 7-103 143-232 (249)
9 PRK14830 undecaprenyl pyrophos 100.0 2.9E-41 6.2E-46 261.1 8.1 90 7-103 145-234 (251)
10 PRK10240 undecaprenyl pyrophos 100.0 5E-41 1.1E-45 257.0 8.6 90 7-103 116-205 (229)
11 PRK14829 undecaprenyl pyrophos 100.0 4.5E-41 9.8E-46 258.9 7.7 90 7-103 137-226 (243)
12 PRK14840 undecaprenyl pyrophos 100.0 7.3E-41 1.6E-45 258.9 8.1 90 7-103 145-234 (250)
13 PRK14841 undecaprenyl pyrophos 100.0 9.5E-41 2.1E-45 256.0 8.5 88 7-103 126-213 (233)
14 PRK14827 undecaprenyl pyrophos 100.0 1.1E-40 2.3E-45 263.1 8.3 90 7-103 190-279 (296)
15 cd00475 CIS_IPPS Cis (Z)-Isopr 100.0 2E-40 4.3E-45 252.4 8.3 90 7-103 123-212 (221)
16 PRK14828 undecaprenyl pyrophos 100.0 3.7E-40 7.9E-45 255.5 8.6 94 7-103 147-240 (256)
17 PRK14835 undecaprenyl pyrophos 100.0 2.5E-40 5.5E-45 258.8 7.6 94 7-103 166-259 (275)
18 PRK14834 undecaprenyl pyrophos 100.0 6.1E-40 1.3E-44 253.6 8.6 90 7-103 137-226 (249)
19 PRK14833 undecaprenyl pyrophos 100.0 7.8E-40 1.7E-44 251.0 7.9 89 7-103 127-215 (233)
20 PF01255 Prenyltransf: Putativ 100.0 7.8E-40 1.7E-44 248.0 6.2 89 7-103 119-207 (223)
21 PRK14839 undecaprenyl pyrophos 100.0 6.6E-39 1.4E-43 246.8 7.1 81 7-103 132-212 (239)
22 PTZ00349 dehydrodolichyl dipho 100.0 1.2E-38 2.6E-43 253.6 7.5 97 7-103 145-297 (322)
23 KOG1602 Cis-prenyltransferase 100.0 3.8E-37 8.3E-42 239.0 6.1 90 7-104 162-251 (271)
24 KOG2818 Predicted undecaprenyl 98.8 6.3E-09 1.4E-13 81.6 6.3 76 12-94 162-239 (263)
25 TIGR02468 sucrsPsyn_pln sucros 75.1 12 0.00026 35.0 7.0 61 7-71 774-840 (1050)
26 PF07531 TAFH: NHR1 homology t 56.6 14 0.0003 25.2 2.8 40 14-65 21-62 (96)
27 cd02185 AroH Chorismate mutase 51.8 12 0.00025 26.5 1.9 27 9-35 9-36 (117)
28 TIGR01796 CM_mono_aroH monofun 51.3 12 0.00026 26.4 1.9 27 9-35 9-36 (117)
29 PF07736 CM_1: Chorismate muta 48.4 20 0.00042 25.4 2.6 28 8-35 8-36 (118)
30 smart00549 TAFH TAF homology. 47.3 33 0.00071 23.3 3.5 39 15-65 21-61 (92)
31 PF01228 Gly_radical: Glycine 46.7 34 0.00073 23.1 3.5 26 45-71 75-100 (106)
32 PRK11127 autonomous glycyl rad 46.0 21 0.00046 25.6 2.5 27 45-72 77-103 (127)
33 cd05008 SIS_GlmS_GlmD_1 SIS (S 38.7 44 0.00096 21.8 3.1 24 3-26 46-70 (126)
34 PF15560 Imm8: Immunity protei 38.3 81 0.0018 22.8 4.5 74 7-97 4-89 (133)
35 PF11754 Velvet: Velvet factor 36.1 12 0.00027 27.9 0.1 13 63-75 126-138 (203)
36 smart00281 LamB Laminin B doma 33.8 54 0.0012 22.6 3.0 39 60-99 40-83 (127)
37 PF14081 DUF4262: Domain of un 31.1 75 0.0016 21.7 3.4 79 4-98 33-114 (125)
38 PF03579 SHP: Small hydrophobi 28.3 16 0.00036 23.0 -0.3 17 86-102 6-22 (64)
39 PF11005 DUF2844: Protein of u 28.1 38 0.00082 24.2 1.5 15 60-74 97-111 (132)
40 KOG0013 Uncharacterized conser 27.7 66 0.0014 25.2 2.8 26 9-34 55-80 (231)
41 COG4401 AroH Chorismate mutase 27.4 74 0.0016 22.6 2.8 25 10-34 12-36 (125)
42 PRK11797 D-ribose pyranase; Pr 26.8 1.5E+02 0.0033 21.0 4.4 31 45-80 103-133 (139)
43 cd05014 SIS_Kpsf KpsF-like pro 26.0 92 0.002 20.3 3.0 23 3-25 47-70 (128)
44 PRK11557 putative DNA-binding 25.6 21 0.00045 27.1 -0.3 26 2-28 174-200 (278)
45 cd01270 DYC-1 DYC-1 (DYB-1 bin 24.9 98 0.0021 22.3 3.1 19 13-31 19-37 (140)
46 PF01380 SIS: SIS domain SIS d 24.1 83 0.0018 20.3 2.5 32 1-32 2-33 (131)
47 COG4296 Uncharacterized protei 22.9 1.8E+02 0.004 21.3 4.2 26 42-72 98-123 (156)
48 PF09545 RE_AccI: AccI restric 22.6 75 0.0016 26.2 2.4 21 51-72 88-108 (366)
49 cd04795 SIS SIS domain. SIS (S 22.6 1.5E+02 0.0032 17.6 3.3 23 3-25 47-70 (87)
50 PF08632 Zds_C: Activator of m 22.4 16 0.00035 22.4 -1.1 9 75-83 41-49 (53)
51 KOG4458 Nitric oxide synthase- 22.4 36 0.00079 22.0 0.4 17 12-28 49-65 (78)
52 TIGR00441 gmhA phosphoheptose 22.3 1.3E+02 0.0028 20.9 3.4 27 2-28 78-104 (154)
53 PRK13936 phosphoheptose isomer 20.9 1.4E+02 0.003 21.8 3.4 27 2-28 110-136 (197)
54 KOG1620 Inositol polyphosphate 20.4 46 0.00099 26.5 0.8 47 45-96 115-161 (284)
55 PF12359 DUF3645: Protein of u 20.3 62 0.0013 18.1 1.1 16 1-16 1-16 (34)
No 1
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=100.00 E-value=2.7e-43 Score=269.15 Aligned_cols=90 Identities=29% Similarity=0.390 Sum_probs=87.3
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++++.+|.++ +++|+++.|+++||++++||||||||||||+|||||||||++||
T Consensus 122 nia~~Yggr~EI~~A~~~~~~~~~~g~~~-------~~~i~e~~~~~~L~t~~~pdpDLlIRTsGE~RLSnFLlWQ~aya 194 (226)
T TIGR00055 122 NIAFNYGGRNEILHAVKQIAEKVKSGKLL-------PEDIDEETLNKHLYTANLPPVDLLIRTSGEMRISNFLLWQSSYA 194 (226)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHhCCCC-------hhhCCHHHHHHhhccCCCCCCCEEEeCCCcccccCcHHHHHhce
Confidence 58999999999999999999999999988 78999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 195 El~F~~~lWPdF~~~~l 211 (226)
T TIGR00055 195 ELYFTDILWPDFDPQDF 211 (226)
T ss_pred EEEECCCCCCcCCHHHH
Confidence 99999999999999875
No 2
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=100.00 E-value=1.4e-42 Score=267.82 Aligned_cols=91 Identities=30% Similarity=0.464 Sum_probs=88.2
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|||++++++++|.++ +++||++.|+++|+++++||||||||||||+|||||||||++||
T Consensus 139 ~~a~nYGGR~eI~~avr~ia~~v~~g~l~-------~~~I~e~~i~~~L~~~~~pdpDLlIRTsGe~RlSnFllWQ~aYs 211 (245)
T COG0020 139 NIAVNYGGRDEIVDAVRKIAEDVAAGKLS-------PEDIDEELISSHLYTSGLPDPDLLIRTSGEQRLSNFLLWQSAYS 211 (245)
T ss_pred EEeeCCCCHHHHHHHHHHHHHHHHcCCCC-------hHHcCHHHHHHhhcccCCCCCCEEEeCCCcccccccHHHHHHhC
Confidence 58999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCcccccC
Q 039384 87 SLYSPAALWLEEKKKRQF 104 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~~ 104 (104)
||||+|++||||++.|++
T Consensus 212 ElyF~d~lWPdf~~~d~~ 229 (245)
T COG0020 212 ELYFTDVLWPDFRREDLL 229 (245)
T ss_pred eEEeccccCCCCCHHHHH
Confidence 999999999999998864
No 3
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=5.9e-42 Score=265.42 Aligned_cols=90 Identities=29% Similarity=0.417 Sum_probs=87.0
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++++++|.++ +++|+++.|+++||++++||||||||||||+||||||||||+||
T Consensus 141 nia~~Yggr~EI~~A~k~~~~~v~~g~~~-------~~~i~e~~i~~~L~~~~~Pd~DLlIRTsGE~RLSnFLlWQ~aya 213 (253)
T PRK14832 141 TVAVNYGSRNEITRACRQVAELVQQGKLS-------ADAVNEQLVEQHLYTADTPPPDLLIRTSGEMRLSNFLLWQMAYT 213 (253)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHhCCCC-------hhhCCHHHHHHhhCcCCCCCCCEEEECCCcccccCcHHHHHhhe
Confidence 58999999999999999999999999988 68999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||+..|+
T Consensus 214 ElyF~~~lWPdf~~~df 230 (253)
T PRK14832 214 EMYFTDILWPDFDRAAF 230 (253)
T ss_pred EEEECCCCCCcCCHHHH
Confidence 99999999999999876
No 4
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.5e-41 Score=261.59 Aligned_cols=91 Identities=30% Similarity=0.389 Sum_probs=86.0
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++++.+|.+++ .++|+++.|+++||++++||||||||||||+|||||||||++||
T Consensus 131 nia~~Yggr~EI~~A~~~~~~~~~~~~~~~------~~~i~e~~~~~~L~t~~~p~pDLlIRTsGE~RLSnFLlWQ~aya 204 (241)
T PRK14842 131 NFCLNYGSHDELLRAAQEVFLARKAKKVTL------EKPLKEKEFEKFLYTSPLPPVDLLIRTAGEQRLSNFLLWQSAYA 204 (241)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCCCc------cccCCHHHHHHHhCcCCCCCCCEEEECCCcccccCCHHHHHhce
Confidence 589999999999999999999999998873 24799999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 205 El~F~~~lWPdF~~~dl 221 (241)
T PRK14842 205 ELYFTDTLWPDFDKNSL 221 (241)
T ss_pred EEEECCCCCccCCHHHH
Confidence 99999999999999875
No 5
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.5e-41 Score=261.64 Aligned_cols=90 Identities=26% Similarity=0.393 Sum_probs=87.1
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++++++|.++ +++|+++.|+++||++++||||||||||||+||||||||||+||
T Consensus 131 nia~~Yggr~EI~~A~~~~~~~~~~g~~~-------~~~i~e~~~~~~L~~~~~pd~DLlIRTsGE~RLSnFLlWQ~aya 203 (242)
T PRK14838 131 VLALSYSSRWEITEATRQIATLVQNGELN-------PEEITEESISEHLTTNFMPDPDLLIRTGGEIRLSNYLLWQCAYS 203 (242)
T ss_pred EEeecCCCHHHHHHHHHHHHHHHHhCCCC-------hhhCCHHHHHHHhccCCCCCCCEEEeCCCCccccCchHHHhcce
Confidence 58999999999999999999999999988 68999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 204 El~F~~~lWPdf~~~d~ 220 (242)
T PRK14838 204 ELYFCDTFWPDFDEEEL 220 (242)
T ss_pred eEEeCCCCCccCCHHHH
Confidence 99999999999999875
No 6
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.2e-41 Score=263.47 Aligned_cols=90 Identities=28% Similarity=0.402 Sum_probs=87.3
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++++.+|.++ +++||++.|+++||++++||||||||||||+|||||||||++||
T Consensus 137 nla~~YggR~EI~~A~k~l~~~~~~g~l~-------~~~i~e~~i~~~L~~~~~pdpDLlIRTsGE~RLSnFLlWQ~aya 209 (253)
T PRK14836 137 SLAVSYGGRWDIVTAARALAREVAAGKLA-------PDEIDEALLAQHLALADLPEPDLFIRTSGELRISNFLLWQLAYT 209 (253)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHhCCCC-------hHhCCHHHHHHHhccCCCCCCCEEEEcCCcccccCChHHHHhhe
Confidence 58999999999999999999999999998 68999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 210 ElyF~~~lWPdf~~~d~ 226 (253)
T PRK14836 210 ELYFTDTLWPDFDAQEL 226 (253)
T ss_pred EEEeCCCCCCcCCHHHH
Confidence 99999999999999876
No 7
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.7e-41 Score=259.87 Aligned_cols=86 Identities=23% Similarity=0.312 Sum_probs=81.1
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++ +.++ +++|+++.|+++||++++||||||||||||+||||||||||+||
T Consensus 129 nia~~Yggr~EI~~A~~~~~~----~~~~-------~~~i~e~~~~~~L~~~~~p~~DLlIRTsGE~RLSnFLLWQ~aya 197 (230)
T PRK14837 129 NLAINYGGRNEIVRAVKKFLS----SGLD-------LETLNENVFSKFLDNPELPDLDLLIRTGGDMRISNFLLWRIAYC 197 (230)
T ss_pred EEEecCCCHHHHHHHHHHHHh----cCCC-------hhhCCHHHHHHhhccCCCCCCCEEEECCCcccccccHHHhhhhe
Confidence 689999999999999999984 4565 68999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 198 ElyF~d~lWPdF~~~dl 214 (230)
T PRK14837 198 EFIFSNVLWPEYYVNHY 214 (230)
T ss_pred EEEECCCCCccCCHHHH
Confidence 99999999999999875
No 8
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.3e-41 Score=261.37 Aligned_cols=90 Identities=26% Similarity=0.352 Sum_probs=87.1
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++++++|.++ +++|+++.|+++||++++||||||||||||+|||||||||++||
T Consensus 143 nia~~Yggr~EIv~A~~~l~~~v~~g~l~-------~~~i~e~~~~~~L~t~~~pdpDLlIRTsGE~RLSnFLlWQ~aya 215 (249)
T PRK14831 143 NVCTNYGGRQEIVQAARAIAQQVQQGELD-------PSEIDENLFESELYTAGIKDPDLLIRTSGEMRISNFLLWQLAYA 215 (249)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCCC-------hHhCCHHHHHHhhccCCCCCCCEEEeCCCCccccCchhhhhhce
Confidence 58999999999999999999999999988 68999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 216 El~F~~~lWPdf~~~dl 232 (249)
T PRK14831 216 EIYVTDVLWPDFDRDEF 232 (249)
T ss_pred eEEECCCCCCcCCHHHH
Confidence 99999999999999875
No 9
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.9e-41 Score=261.12 Aligned_cols=90 Identities=31% Similarity=0.433 Sum_probs=87.1
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++++.+|.++ +++|+++.|+++||++++||||||||||||+|||||||||++||
T Consensus 145 nia~~YggR~EI~~A~~~~~~~v~~g~l~-------~~~I~e~~i~~~L~~~~~pdpDLlIRTsGe~RLSnFLlWQ~aya 217 (251)
T PRK14830 145 NFALNYGGRAEIVSAVKEIAKDVLDGKLN-------PEDITEELISNYLMTKGLPDPDLLIRTSGELRLSNFLLWQLAYS 217 (251)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCCC-------hHhCCHHHHHHHhCcCCCCCCCEEEeCCCCCcccCChHHHHcce
Confidence 58999999999999999999999999988 68999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 218 El~F~~~lWPdf~~~d~ 234 (251)
T PRK14830 218 EFYFTDVLWPDFDEEEL 234 (251)
T ss_pred EEEECCCCCCcCCHHHH
Confidence 99999999999999875
No 10
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=5e-41 Score=256.99 Aligned_cols=90 Identities=26% Similarity=0.347 Sum_probs=87.1
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++++.+|.++ +++|+++.|+++||++++||||||||||||+||||||||||+||
T Consensus 116 nla~~Yggr~EI~~A~~~~~~~v~~g~~~-------~~~i~e~~i~~~L~t~~~pdpDLlIRTsGe~RLSnFLlWQ~aya 188 (229)
T PRK10240 116 NIAANYGGRWDIVQGVRQLAEQVQQGNLQ-------PDQIDEEMLNQHICMHELAPVDLVIRTGGEHRISNFLLWQIAYA 188 (229)
T ss_pred EEEeccCCHHHHHHHHHHHHHHHHcCCCC-------hhhCCHHHHHHHhccCCCCCCCEEEeCCCcccccCChHHHHhhe
Confidence 58999999999999999999999999988 78999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.++
T Consensus 189 ElyF~~~lWPdf~~~df 205 (229)
T PRK10240 189 ELYFTDVLWPDFDEQDF 205 (229)
T ss_pred EEEECCCCCCcCCHHHH
Confidence 99999999999998875
No 11
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.5e-41 Score=258.92 Aligned_cols=90 Identities=23% Similarity=0.313 Sum_probs=87.1
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++|+||+||++|++++++++++|.++ +++|+++.|+++||++++||||||||||||+|||||||||++||
T Consensus 137 nia~~Y~gr~EI~~A~~~~~~~~~~g~~~-------~~~i~e~~i~~~L~~~~~pdpDLlIRTsGe~RLSnFLlWQ~aya 209 (243)
T PRK14829 137 VFCVNYGGRAEIADAAAAIAREVRDGKIS-------GDRVTEKMISDHLYNPDMPDVDLFLRTSGEQRTSNFLLWQSAYA 209 (243)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCCC-------hHhCCHHHHHHHhccCCCCCCCEEEEcCCcccccCchHHhHhhe
Confidence 58999999999999999999999999988 68999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 210 El~F~~~lWPdf~~~d~ 226 (243)
T PRK14829 210 ELDFVPKLFPDFGRDDL 226 (243)
T ss_pred EEEeCCCCCCcCCHHHH
Confidence 99999999999999875
No 12
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=7.3e-41 Score=258.94 Aligned_cols=90 Identities=26% Similarity=0.347 Sum_probs=87.1
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++++.+|.++ +++|+++.|+++|+++++||||||||||||+|||||||||++||
T Consensus 145 nla~~Yggr~EI~~A~~~~~~~v~~~~~~-------~~~i~~~~i~~~L~~~~~pdpDLlIRTsGe~RLSnFLlWQ~aya 217 (250)
T PRK14840 145 VLAINYGGKDELVRAFKKLHQDLANKKIS-------SDDISEELISSYLDTSGLPDPDLLIRTGGEMRVSNFLLWQIAYT 217 (250)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHhCCCC-------hhhCCHHHHHHHhccCCCCCCCEEEeCCCCcccccchHHhHhce
Confidence 58999999999999999999999999988 68999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 218 El~F~~~lWPdf~~~df 234 (250)
T PRK14840 218 ELYVTDVLWPDFTPNDL 234 (250)
T ss_pred eEEECCCCCCcCCHHHH
Confidence 99999999999999876
No 13
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=9.5e-41 Score=255.99 Aligned_cols=88 Identities=30% Similarity=0.458 Sum_probs=83.3
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++++.+|.. .+|+++.|+++||++++||||||||||||+||||||||||+||
T Consensus 126 nia~~Yggr~EI~~A~~~~~~~~~~~~~---------~~i~~~~~~~~L~~~~~pdpDLlIRTsGE~RLSnFLlWQ~aya 196 (233)
T PRK14841 126 VIAFNYGGRREILDAVESILKDVSQGKK---------IELTEETFRQYLYLPDVPDPDLIIRTSGEMRLSNFLLWQSAYS 196 (233)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCc---------CCCCHHHHHHHhccCCCCCCCEEEeCCCCccccCcHHHHhhce
Confidence 4899999999999999999999988762 4789999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 197 ElyF~~~lWPdf~~~dl 213 (233)
T PRK14841 197 ELYFFKKLWPDFTKRDF 213 (233)
T ss_pred eEEECCCCCCcCCHHHH
Confidence 99999999999999875
No 14
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.1e-40 Score=263.15 Aligned_cols=90 Identities=21% Similarity=0.337 Sum_probs=87.3
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++++.+|.++ +++|+++.|+++||++++||||||||||||+|||||||||++||
T Consensus 190 nia~~YgGR~EI~~A~~~i~~~v~~g~l~-------~~~I~e~~i~~~L~t~~~PdpDLlIRTsGE~RLSnFLLWQ~aya 262 (296)
T PRK14827 190 NYCVNYGGRTEITEATREIAREAAAGRLN-------PERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYA 262 (296)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCCC-------hhhccHHHHHHHhccCCCCCCCEEEecCCcccccCchHhhhhhe
Confidence 58999999999999999999999999988 78999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 263 El~F~d~lWPdF~~~dl 279 (296)
T PRK14827 263 EYIFQDKLWPDYDRRDL 279 (296)
T ss_pred EEEecCCCCccCCHHHH
Confidence 99999999999999875
No 15
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=100.00 E-value=2e-40 Score=252.43 Aligned_cols=90 Identities=30% Similarity=0.435 Sum_probs=87.0
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++|+||+||++|++++++++.+|.++ +++|+++.|+++|+++++||||||||||||+|||||||||++||
T Consensus 123 ni~~~Y~gr~eI~~a~~~~~~~~~~~~~~-------~~~i~~~~~~~~L~~~~~p~pDLlIRTsGe~RLSnFLlWQ~~ya 195 (221)
T cd00475 123 NVAFNYGGRQEIIHAVREIAEKVKAGKLT-------PEDIDESTLNKHLYTHDSPDPDLLIRTSGEQRLSNFLLWQSAYS 195 (221)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCCC-------hHhCCHHHHHHhhCcCCCCCCCEEEecCCccccccchHhhHhhe
Confidence 58999999999999999999999999988 68999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 196 El~F~~~lWPdf~~~~~ 212 (221)
T cd00475 196 ELYFSDVLWPDFTFWDF 212 (221)
T ss_pred eEEECCCCCCcCCHHHH
Confidence 99999999999999875
No 16
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=3.7e-40 Score=255.55 Aligned_cols=94 Identities=23% Similarity=0.403 Sum_probs=86.5
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++++.+|.++++ +..++|+++.|+++|+++++||||||||||||+|||||||||++||
T Consensus 147 nia~~Yggr~EI~~A~~~~~~~~~~~~~~~~---~~~~~i~e~~i~~~L~~~~~P~pDLlIRTsGE~RLSnFLlWQ~aya 223 (256)
T PRK14828 147 NVAVGYGGRQEIVDAVRSLLTEHKDKGTSID---ELAESVTVDAISTHLYTGGQPDPDLVIRTSGEQRLSGFMLWQSAHS 223 (256)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHhCCCChh---hccccCCHHHHHHHhccCCCCCCCEEEeCCCCCcccCChHHHhhhe
Confidence 4899999999999999999999999988731 2244789999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 224 ElyF~~~lWPdf~~~dl 240 (256)
T PRK14828 224 EYYFCETYWPAFRKVDF 240 (256)
T ss_pred EEEeCCCCCccCCHHHH
Confidence 99999999999999875
No 17
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.5e-40 Score=258.76 Aligned_cols=94 Identities=24% Similarity=0.339 Sum_probs=85.5
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++++.+|.++++ +..++++++.|+++||++++|+||||||||||+||||||||||+||
T Consensus 166 nia~~Yggr~EI~~A~k~i~~~~~~g~~~~~---~i~~~~~e~~i~~~L~~~~~p~pDLLIRTsGE~RLSnFLLWQsaya 242 (275)
T PRK14835 166 NIAVGYGGREEIVDAVKSLLLEAAATGKSPE---EVAAELTPEHISAHLYTAGVPDPDFIIRTSGEIRLSGFLLWQSAYS 242 (275)
T ss_pred EEEeccCCHHHHHHHHHHHHHHHHcCCCChH---HhcccCCHHHHHHHhccCCCCCCCEEEecCCCccccCCHHHhhhhe
Confidence 5899999999999999999999999988831 1123458999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 243 ElyF~d~lWPdF~~~d~ 259 (275)
T PRK14835 243 EYYFCDVYWPGFRKVDF 259 (275)
T ss_pred EEEeCCCCCCcCCHHHH
Confidence 99999999999999875
No 18
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=6.1e-40 Score=253.60 Aligned_cols=90 Identities=28% Similarity=0.372 Sum_probs=87.0
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++++.+|.++ +++|+++.|+++||++++||||||||||||+|||||||||++||
T Consensus 137 nla~~Yggr~EI~~A~k~~~~~~~~g~~~-------~~dI~e~~i~~~L~~~~~pdpDLLIRTsGe~RLSnFLlWQ~~ya 209 (249)
T PRK14834 137 VIAFNYGSRDEIARAVRRLAREVAEGRLD-------PASIDAETISANLDTADIPDPDLIIRTSGEQRLSNFLLWQAAYS 209 (249)
T ss_pred EEEeccCCHHHHHHHHHHHHHHHHcCCCC-------hhhCCHHHHHHHhccCCCCCCCEEEEcCCcccccCChHHhHhhe
Confidence 38999999999999999999999999988 78999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 210 ElyF~~~lWPdf~~~d~ 226 (249)
T PRK14834 210 ELLFVPIHWPDFDKAAL 226 (249)
T ss_pred EEEeCCCCCCcCCHHHH
Confidence 99999999999999875
No 19
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=7.8e-40 Score=250.95 Aligned_cols=89 Identities=27% Similarity=0.333 Sum_probs=80.9
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++++... .. ..+|+++.|+++||++++|+||||||||||+|||||||||++||
T Consensus 127 nia~~Y~gr~EI~~A~~~~~~~~~~~-~~-------~~~i~e~~l~~~L~~~~~p~pDLlIRTsGE~RLSnFLlWQ~aya 198 (233)
T PRK14833 127 VLALNYGSKDEISRAFKKLLESPPSH-IG-------ELESLEEEISNCLDTADLPEVDLLIRTGGEMRLSNFLLWQSSYA 198 (233)
T ss_pred EEEecCCCHHHHHHHHHHHHHHhhcc-cC-------cccCCHHHHHHHhccCCCCCCCEEEECCCCccccccHHHHHhce
Confidence 58999999999999999999886311 11 24799999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 199 ElyF~~~lWPdf~~~dl 215 (233)
T PRK14833 199 ELFFTPILWPDFTPKDL 215 (233)
T ss_pred eEEECCCCCCcCCHHHH
Confidence 99999999999999886
No 20
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=100.00 E-value=7.8e-40 Score=247.98 Aligned_cols=89 Identities=27% Similarity=0.386 Sum_probs=76.2
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++.+++|.++ +++||++.|+++|+++++| ||||||||||+||||||||||+||
T Consensus 119 nia~~Yggr~eI~~a~~~~~~~~~~~~~~-------~~~i~~~~i~~~L~~~~~P-pDLlIRtsGe~RLS~FllWq~~y~ 190 (223)
T PF01255_consen 119 NIAINYGGRDEIVDAARKLAEEVQSGKLS-------PEDIDEELISSHLYTPDLP-PDLLIRTSGEQRLSNFLLWQSAYA 190 (223)
T ss_dssp EEEECE-HHHHHHHHHHHHHHHHHTTSSG-------GGG-SHHHHHHTSTTTTS---SEEEEETT--C-TTSSTTTTTT-
T ss_pred EEEecCCcHHHHHHHHHHhhhhhccCccc-------cccCCHHHHHhhccccCCC-CCEEEEeCCCcccCCCeEEeecCc
Confidence 58999999999999999999999999998 6899999999999999997 999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 191 El~f~~~~WPdf~~~d~ 207 (223)
T PF01255_consen 191 ELYFTDTLWPDFSFWDF 207 (223)
T ss_dssp EEEEESSSGGG--HHHH
T ss_pred EEEECCCCCccCCHHHH
Confidence 99999999999998875
No 21
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=6.6e-39 Score=246.81 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=76.0
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|+++++ . +++||++.|+++|+ +++|+||||||||||+||||||||||+||
T Consensus 132 nia~~Yggr~EI~~A~k~~~--------~-------~~~i~e~~~~~~l~-~~~p~~DLlIRTsGE~RLSnFLlWQ~aya 195 (239)
T PRK14839 132 RIAVDYSARDAILAAAAKAL--------G-------PEGLSREAFSDLLT-GDGGDVDLLIRTGGEKRLSDFLLWESAYA 195 (239)
T ss_pred EEEecCCCHHHHHHHHHHhc--------C-------cccCCHHHHHHHhc-cCCCCCCEEEeCCCccccccchhhhhhhe
Confidence 58999999999999999874 2 57899999999998 78999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 196 el~F~d~lWPdF~~~d~ 212 (239)
T PRK14839 196 ELHFTDRMWPDFGADDL 212 (239)
T ss_pred EEEEccCCCccCCHHHH
Confidence 99999999999999875
No 22
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=100.00 E-value=1.2e-38 Score=253.58 Aligned_cols=97 Identities=23% Similarity=0.296 Sum_probs=81.2
Q ss_pred eEEecCCchhHHH----------HHHHHHHHH-------------HhcCCCccccc---------------c--------
Q 039384 7 VQPLKINSLILPV----------PDVQEYCED-------------KLDGSQALKEK---------------I-------- 40 (104)
Q Consensus 7 ~~a~~Y~gR~EIv----------~Av~~~~~~-------------v~~g~l~~~~~---------------~-------- 40 (104)
.+|++||||+||+ +|+++++++ +.+|.+.+.+. .
T Consensus 145 nia~~YggR~EI~~~v~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (322)
T PTZ00349 145 NIFFSYTSRNEMSLCKFNPNLYFDTYKNLLEEKKILCGSNILTDPIKEGTFAIPDDEDECDYLDHELENERIDLDLKFDG 224 (322)
T ss_pred EEEecCCCHHHHHHhhcccchHHHHHHHHHHHhccccccccccccccccccccchhcccccccccccccccccccccccc
Confidence 5899999999999 799999988 45665542100 0
Q ss_pred ---------CCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhh-cceeEEeccCCCcCCccccc
Q 039384 41 ---------DEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQT-SNCSLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 41 ---------~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~-~yael~f~~~lWPdf~~~~~ 103 (104)
-.++.|+++.|.++||++++||||||||||||+|||||||||+ +||||||+++|||||++.++
T Consensus 225 ~~~~~~~~~i~e~~i~~~~~~~~Lyt~~~PdpDLlIRTSGE~RLSNFLLWQ~aaysElyF~d~lWPdF~~~d~ 297 (322)
T PTZ00349 225 DCICGEKSFLNEEQIEIVNYHKKLLTSDLPPPNILIRTSGEKRLSDFMLYQISEFTEIYFINEYWPIFNFLQF 297 (322)
T ss_pred cccccccccCChhhccHHHHHHhccCCCCCCCCEEEECCCcccccccHHhhcccceEEEECCCCCCCCCHHHH
Confidence 0234566667999999999999999999999999999999999 59999999999999998875
No 23
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=100.00 E-value=3.8e-37 Score=239.01 Aligned_cols=90 Identities=34% Similarity=0.461 Sum_probs=86.5
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++|+||+||++|||.++..+++|.++ .+|++..++++||+++.|.||||||||||.|||||||||+++|
T Consensus 162 ~vcf~Ytsr~EI~~a~r~~~~~~~~g~~~--------~~i~~~~~e~~l~~~~~p~pDLlIRTSGe~RLSnFllWQ~s~t 233 (271)
T KOG1602|consen 162 NVCFAYTSRDEILHAVRGIVKRVKDGDID--------VDINLSDIEECLYTSDVPHPDLLIRTSGEDRLSNFLLWQTSET 233 (271)
T ss_pred EEEeccCcHHHHHHHHHHHHHhhhcCCCc--------cchhhHHHHHhhccCCCCCCCEEEEcCCcchHHHHHHHHhccc
Confidence 68999999999999999999999999886 3899999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCcccccC
Q 039384 87 SLYSPAALWLEEKKKRQF 104 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~~ 104 (104)
+++|.++|||||+..|+|
T Consensus 234 ~l~f~~~LWPefg~~~l~ 251 (271)
T KOG1602|consen 234 ELFFADALWPEFGLWHLF 251 (271)
T ss_pred EEeeccccCccccHHHHH
Confidence 999999999999998865
No 24
>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism]
Probab=98.85 E-value=6.3e-09 Score=81.56 Aligned_cols=76 Identities=12% Similarity=0.072 Sum_probs=63.0
Q ss_pred CCchhHHHHHHHHHHHHHhcCC--CccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcceeEE
Q 039384 12 INSLILPVPDVQEYCEDKLDGS--QALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLY 89 (104)
Q Consensus 12 Y~gR~EIv~Av~~~~~~v~~g~--l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~yael~ 89 (104)
-+||.-|++.++.+...+.... .+ +.+||.+++++.|-....|+|||+|+.|...-|+||++||++.|||+
T Consensus 162 ~DGr~~i~Dl~r~i~~~~~~~~~~~~-------~~~itve~vds~l~e~~~PePdLll~fg~~~~l~GfpPWhiRltEf~ 234 (263)
T KOG2818|consen 162 EDGRMIIIDLTRLIQELCYLYELYRS-------ETDITVETVDSELKEFVEPEPDLLLFFGPVLVLQGFPPWHIRLTEFT 234 (263)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCC-------CccccHHHHHHHHHhcCCCCcceeeeeccchhhcCCCCceeEEEEeE
Confidence 4799777777777766544332 22 67999999999998888999999999999999999999999999998
Q ss_pred eccCC
Q 039384 90 SPAAL 94 (104)
Q Consensus 90 f~~~l 94 (104)
-.+..
T Consensus 235 ~~p~~ 239 (263)
T KOG2818|consen 235 RKPSH 239 (263)
T ss_pred ecccc
Confidence 77643
No 25
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=75.07 E-value=12 Score=35.03 Aligned_cols=61 Identities=16% Similarity=0.077 Sum_probs=39.1
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhc----CCCccccccCCCCCCCHHHHHhhhhcCCCC--CCcEEEeccC
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLD----GSQALKEKIDEDTIKKLVDVEKHMFMAVAP--DPDITIRSSG 71 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~----g~l~~~~~~~~~~~It~~~i~~~L~~~~~P--dpDLlIRTSG 71 (104)
|||+--++......+++++.+.+.. |.+-. -....-+...+.+-|...++| +||.+|--+|
T Consensus 774 via~D~d~~~~~~~~l~~~~~~~~~~~~~~~igf----v~aTGR~l~~~~~~l~~~~lp~~~PD~lI~~vG 840 (1050)
T TIGR02468 774 VIAVDCYDDKDLLQIIKNIFEAVRKERMEGSSGF----ILSTSMTISEIQSFLKSGGLNPTDFDALICNSG 840 (1050)
T ss_pred EEEeccCCCCChHHHHHHHHHHHhccccCCceEE----EEEcCCCHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 3444444444466667777666652 22210 013456778888888888898 9999999888
No 26
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=56.57 E-value=14 Score=25.24 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=27.4
Q ss_pred chhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhc--CCCCCCcE
Q 039384 14 SLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFM--AVAPDPDI 65 (104)
Q Consensus 14 gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~--~~~PdpDL 65 (104)
.--|+..+|++++.+..+|++ +.|.|.+.|+. .-.|.|.|
T Consensus 21 ~spev~~~Vr~LV~~L~~~~i------------~~EeF~~~Lq~~lns~pqP~l 62 (96)
T PF07531_consen 21 QSPEVGENVRELVQNLVDGKI------------EAEEFTSKLQEELNSSPQPYL 62 (96)
T ss_dssp C-CCHHHHHHHHHHHHHTTSS-------------HHHHHHHHHHHCTSS--TTH
T ss_pred CChHHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHhcCCCCcch
Confidence 346889999999999888764 56789999984 33355544
No 27
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=51.77 E-value=12 Score=26.48 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=20.8
Q ss_pred EecCCchhHHHHHHHHHHHHHh-cCCCc
Q 039384 9 PLKINSLILPVPDVQEYCEDKL-DGSQA 35 (104)
Q Consensus 9 a~~Y~gR~EIv~Av~~~~~~v~-~g~l~ 35 (104)
-+.-+.+++|..|+++++.++. ++.+.
T Consensus 9 Tv~~nt~e~I~~at~eLl~~i~~~N~l~ 36 (117)
T cd02185 9 TVEENTAEEILEATRELLEEIIERNNIK 36 (117)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 3566899999999999997764 44444
No 28
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=51.34 E-value=12 Score=26.41 Aligned_cols=27 Identities=11% Similarity=-0.076 Sum_probs=20.9
Q ss_pred EecCCchhHHHHHHHHHHHHH-hcCCCc
Q 039384 9 PLKINSLILPVPDVQEYCEDK-LDGSQA 35 (104)
Q Consensus 9 a~~Y~gR~EIv~Av~~~~~~v-~~g~l~ 35 (104)
-+.-+++++|..|+++++.++ +++++.
T Consensus 9 Tv~~nt~e~I~~at~eLl~~ii~~N~l~ 36 (117)
T TIGR01796 9 TVERNEAEEIGEAVAELLTELMERNELT 36 (117)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 356689999999999999776 455554
No 29
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=48.45 E-value=20 Score=25.36 Aligned_cols=28 Identities=11% Similarity=0.016 Sum_probs=20.3
Q ss_pred EEecCCchhHHHHHHHHHHHHH-hcCCCc
Q 039384 8 QPLKINSLILPVPDVQEYCEDK-LDGSQA 35 (104)
Q Consensus 8 ~a~~Y~gR~EIv~Av~~~~~~v-~~g~l~ 35 (104)
+.+.-+.++||..|+++++.++ ++++++
T Consensus 8 ~tv~~n~~e~I~~at~eLl~~i~~~N~l~ 36 (118)
T PF07736_consen 8 TTVEENTPEEILEATRELLEEILERNELS 36 (118)
T ss_dssp EE-SSSSHHHHHHHHHHHHHHHHHHTT--
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 3456789999999999999886 455555
No 30
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=47.35 E-value=33 Score=23.32 Aligned_cols=39 Identities=10% Similarity=0.064 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcC--CCCCCcE
Q 039384 15 LILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMA--VAPDPDI 65 (104)
Q Consensus 15 R~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~--~~PdpDL 65 (104)
.-|+...||+++.++..|++ +.|.|...|+.. -.|.|.|
T Consensus 21 qpe~~~~Vr~LV~~L~~~~i------------~~EeF~~~Lq~~lns~~qP~l 61 (92)
T smart00549 21 QPEVAERVRTLVLGLVNGTI------------TAEEFTSRLQEALNSPLQPYL 61 (92)
T ss_pred cchHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHcCCCCchh
Confidence 37899999999999888765 467788888743 3355554
No 31
>PF01228 Gly_radical: Glycine radical; InterPro: IPR001150 Synonym(s):Pyruvate formate-lyase Escherichia coli Formate C-acetyltransferase (2.3.1.54 from EC) (genes pflB and pflD) is a key enzyme of anaerobic glucose metabolism, it converts pyruvate and CoA into acetyl-CoA and pyruvate. This enzyme is posttranslationally interconverted, under anaerobic conditions, from an inactive to an active form that carries a stable radical localized to a specific glycine at the C terminus []. Such a glycine radical seems [] also to be present in E. coli (gene nrdD) and Bacteriophage T4 (gene nrdD or sunY) anaerobic ribonucleoside-triphosphate reductase (1.17.4.2 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1MZO_B 3PFL_B 1H18_A 2PFL_A 1CM5_B 1H16_A 1H17_A 1R9E_A 1R8W_A 1R9D_A ....
Probab=46.68 E-value=34 Score=23.13 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=14.8
Q ss_pred CCCHHHHHhhhhcCCCCCCcEEEeccC
Q 039384 45 IKKLVDVEKHMFMAVAPDPDITIRSSG 71 (104)
Q Consensus 45 ~It~~~i~~~L~~~~~PdpDLlIRTSG 71 (104)
-++.+.+.+..-.++ --+||++|.+|
T Consensus 75 vv~~e~L~~Aq~~Pe-~y~~LiVRV~G 100 (106)
T PF01228_consen 75 VVDRETLRDAQKHPE-KYPDLIVRVAG 100 (106)
T ss_dssp ES-HHHHHHHHHSGG-GGTT-EEE-SS
T ss_pred ecCHHHHHHHHhCcc-ccCCEEEEece
Confidence 445566666554432 35899999998
No 32
>PRK11127 autonomous glycyl radical cofactor GrcA; Provisional
Probab=46.03 E-value=21 Score=25.58 Aligned_cols=27 Identities=26% Similarity=0.301 Sum_probs=18.8
Q ss_pred CCCHHHHHhhhhcCCCCCCcEEEeccCC
Q 039384 45 IKKLVDVEKHMFMAVAPDPDITIRSSGE 72 (104)
Q Consensus 45 ~It~~~i~~~L~~~~~PdpDLlIRTSGE 72 (104)
-++.+.+.+..-.++ .-|||+||-||=
T Consensus 77 Vvd~etL~dAqk~PE-kYpdLiVRVsGY 103 (127)
T PRK11127 77 VLRRETLEDAVKHPE-KYPQLTIRVSGY 103 (127)
T ss_pred ecCHHHHHHHHhChh-cCCCeEEEEeeE
Confidence 455666666655443 578999999993
No 33
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=38.71 E-value=44 Score=21.80 Aligned_cols=24 Identities=4% Similarity=-0.111 Sum_probs=17.1
Q ss_pred CCCCeEEecCCchh-HHHHHHHHHH
Q 039384 3 KSDDVQPLKINSLI-LPVPDVQEYC 26 (104)
Q Consensus 3 ~~~~~~a~~Y~gR~-EIv~Av~~~~ 26 (104)
+.|=|++++++|.. |++++++...
T Consensus 46 ~~d~~I~iS~sG~t~e~~~~~~~a~ 70 (126)
T cd05008 46 EDTLVIAISQSGETADTLAALRLAK 70 (126)
T ss_pred CCcEEEEEeCCcCCHHHHHHHHHHH
Confidence 45669999999985 4666666543
No 34
>PF15560 Imm8: Immunity protein 8
Probab=38.25 E-value=81 Score=22.76 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=50.0
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcc----hhh
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFL----LWQ 82 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFL----lWQ 82 (104)
++.+-|||...+.+++-.+++++++.- .+.|+.. ....+-..++-+-.||. +|-+- +.|
T Consensus 4 ~ln~ViGG~~~~~~~~~~~ir~mRk~l--------------Kk~F~~~-~~e~l~k~kI~l~~sGd--vS~Y~~~sGIyq 66 (133)
T PF15560_consen 4 ILNIVIGGQIDAEKNLHSLIREMRKSL--------------KKQFESI-EFEGLDKIKINLYFSGD--VSSYCDKSGIYQ 66 (133)
T ss_pred EEEEEEcCcchHHHHHHHHHHHHHHHH--------------HHHHHhh-hHhhhhhEeEEEEEcCc--hhhhcCCCCcch
Confidence 467789999999988888888876631 1122211 12344567888888886 33332 578
Q ss_pred hcc--------eeEEeccCCCcC
Q 039384 83 TSN--------CSLYSPAALWLE 97 (104)
Q Consensus 83 ~~y--------ael~f~~~lWPd 97 (104)
|+| ++++|....|-.
T Consensus 67 ~rY~~kkkefv~~fcid~~~W~s 89 (133)
T PF15560_consen 67 CRYFSKKKEFVVEFCIDRNYWTS 89 (133)
T ss_pred hHHHHhhhheeEEEEeccccccC
Confidence 886 789999999964
No 35
>PF11754 Velvet: Velvet factor; InterPro: IPR021740 The velvet factor is conserved in many fungal species and is found to have gained different roles depending on the organism's need, expanding the conserved role in developmental programmes []. The velvet factor orthologues can be adapted to the fungal-specific life cycle and may be involved in diverse functions such as sclerotia formation and toxin production, as in Aspergillus parasiticus [], nutrition-dependent sporulation, as in A. fumigatus [], or the microconidia-to-macroconidia ratio and cell wall formation, as in the heterothallic fungus Gibberella moniliformis (Fusarium verticillioides).
Probab=36.11 E-value=12 Score=27.94 Aligned_cols=13 Identities=38% Similarity=0.853 Sum_probs=12.1
Q ss_pred CcEEEeccCCcCC
Q 039384 63 PDITIRSSGETRP 75 (104)
Q Consensus 63 pDLlIRTSGE~RL 75 (104)
+||-||+-|..||
T Consensus 126 ~DLsVR~eG~frL 138 (203)
T PF11754_consen 126 PDLSVRTEGRFRL 138 (203)
T ss_pred CCceECcCCEEEE
Confidence 7999999999887
No 36
>smart00281 LamB Laminin B domain.
Probab=33.79 E-value=54 Score=22.64 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=27.4
Q ss_pred CCCCcEEEeccCCcCCC-----CcchhhhcceeEEeccCCCcCCc
Q 039384 60 APDPDITIRSSGETRPS-----NFLLWQTSNCSLYSPAALWLEEK 99 (104)
Q Consensus 60 ~PdpDLlIRTSGE~RLS-----nFLlWQ~~yael~f~~~lWPdf~ 99 (104)
...||++|. |+..+|+ +..+.+...=++.|.+..|+.+.
T Consensus 40 ~~~pdViL~-G~~~~l~~~~~~~~~p~~~~~~~v~~~e~~~~~~~ 83 (127)
T smart00281 40 VSAPDVILE-GNGLRISHPAEGPPLPDELTTVEVRFREENWQYFG 83 (127)
T ss_pred CCCCCEEEE-CCCeEEEEeecCCCCCCcceEEEEEEEecccCcCC
Confidence 357999996 6666775 44454544348999999999875
No 37
>PF14081 DUF4262: Domain of unknown function (DUF4262)
Probab=31.12 E-value=75 Score=21.66 Aligned_cols=79 Identities=6% Similarity=0.011 Sum_probs=50.0
Q ss_pred CCCeEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhh
Q 039384 4 SDDVQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQT 83 (104)
Q Consensus 4 ~~~~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~ 83 (104)
.-+.+.++- ..+.....++++++.+++|..-. ..+ .+.....++++.+|.--...-..||.+-.
T Consensus 33 ~PEliv~GL-~~~~a~~lLn~l~~~v~~g~~~~------~G~---------~~~~~~~~~~v~~~~v~~~~~~~~~~~a~ 96 (125)
T PF14081_consen 33 HPELIVFGL-PPETAHSLLNELADRVRAGERFE------PGQ---------RYDDFLEGFPVEFREVDPPDYPEYLGQAR 96 (125)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHHHHhcCCCCC------CCc---------EEecccCCeEEEEEEeCchhhHHhhhhhh
Confidence 345566666 67777888888999998876421 111 12222256777777776666667777776
Q ss_pred cc---eeEEeccCCCcCC
Q 039384 84 SN---CSLYSPAALWLEE 98 (104)
Q Consensus 84 ~y---ael~f~~~lWPdf 98 (104)
.| ..+-.....|||=
T Consensus 97 ~~Y~~~~~~~lQ~vwpD~ 114 (125)
T PF14081_consen 97 WFYGGPDFPALQLVWPDR 114 (125)
T ss_pred hhcCCCCCCEEEEEEECC
Confidence 54 5566667777773
No 38
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=28.25 E-value=16 Score=23.04 Aligned_cols=17 Identities=6% Similarity=0.004 Sum_probs=14.0
Q ss_pred eeEEeccCCCcCCcccc
Q 039384 86 CSLYSPAALWLEEKKKR 102 (104)
Q Consensus 86 ael~f~~~lWPdf~~~~ 102 (104)
+.+.|+.++||=|+..+
T Consensus 6 ~tIEFtskFW~YFtLi~ 22 (64)
T PF03579_consen 6 TTIEFTSKFWTYFTLIF 22 (64)
T ss_pred EEeeeccccchHHHHHH
Confidence 56899999999887643
No 39
>PF11005 DUF2844: Protein of unknown function (DUF2844); InterPro: IPR021267 This bacterial family of proteins has no known function.
Probab=28.06 E-value=38 Score=24.24 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=12.6
Q ss_pred CCCCcEEEeccCCcC
Q 039384 60 APDPDITIRSSGETR 74 (104)
Q Consensus 60 ~PdpDLlIRTSGE~R 74 (104)
.-.+||+|+++|..|
T Consensus 97 v~~~dlvVes~Ghmr 111 (132)
T PF11005_consen 97 VQQSDLVVESGGHMR 111 (132)
T ss_pred ecCCCEEEEeccccc
Confidence 357899999999866
No 40
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.68 E-value=66 Score=25.19 Aligned_cols=26 Identities=4% Similarity=-0.088 Sum_probs=21.6
Q ss_pred EecCCchhHHHHHHHHHHHHHhcCCC
Q 039384 9 PLKINSLILPVPDVQEYCEDKLDGSQ 34 (104)
Q Consensus 9 a~~Y~gR~EIv~Av~~~~~~v~~g~l 34 (104)
|=+|+||-||-+|.+..+-....|.-
T Consensus 55 apAf~GrKEIWDaL~aa~ta~e~~d~ 80 (231)
T KOG0013|consen 55 APAFGGRKEIWDALHAAVTAAEEGDA 80 (231)
T ss_pred ccccCCcHHHHHHHHHHHHHHhcccH
Confidence 66899999999999998877766643
No 41
>COG4401 AroH Chorismate mutase [Amino acid transport and metabolism]
Probab=27.39 E-value=74 Score=22.63 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=20.4
Q ss_pred ecCCchhHHHHHHHHHHHHHhcCCC
Q 039384 10 LKINSLILPVPDVQEYCEDKLDGSQ 34 (104)
Q Consensus 10 ~~Y~gR~EIv~Av~~~~~~v~~g~l 34 (104)
+.-++-+||.+|++++.++....+.
T Consensus 12 V~~nt~eeI~~at~eLl~~i~~~N~ 36 (125)
T COG4401 12 VESNTEEEILDATKELLEEIEEENI 36 (125)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4557889999999999999876554
No 42
>PRK11797 D-ribose pyranase; Provisional
Probab=26.78 E-value=1.5e+02 Score=21.03 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=19.3
Q ss_pred CCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcch
Q 039384 45 IKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLL 80 (104)
Q Consensus 45 ~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLl 80 (104)
-|.-+.|.+.. .+.-.+||||--+.-+|++|
T Consensus 103 ~i~r~~Fy~~a-----~~a~avVrTGE~~~YaNiIL 133 (139)
T PRK11797 103 YVSHEEFKQLT-----AESKAVIRTGECTPYANIIL 133 (139)
T ss_pred EECHHHHHHHH-----hcceEEEECCCCCCeeEEEE
Confidence 34444554433 46789999975554577665
No 43
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=26.04 E-value=92 Score=20.28 Aligned_cols=23 Identities=9% Similarity=-0.084 Sum_probs=17.4
Q ss_pred CCCCeEEecCCchhH-HHHHHHHH
Q 039384 3 KSDDVQPLKINSLIL-PVPDVQEY 25 (104)
Q Consensus 3 ~~~~~~a~~Y~gR~E-Iv~Av~~~ 25 (104)
+.|=|++++++|+.. ++++++.+
T Consensus 47 ~~d~vi~iS~sG~t~~~~~~~~~a 70 (128)
T cd05014 47 PGDVVIAISNSGETDELLNLLPHL 70 (128)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 456789999999865 66776664
No 44
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=25.61 E-value=21 Score=27.06 Aligned_cols=26 Identities=4% Similarity=-0.158 Sum_probs=17.3
Q ss_pred CCCCCeEEecCCchhH-HHHHHHHHHHH
Q 039384 2 HKSDDVQPLKINSLIL-PVPDVQEYCED 28 (104)
Q Consensus 2 ~~~~~~~a~~Y~gR~E-Iv~Av~~~~~~ 28 (104)
.+.|=+++++|+|..+ ++.++ +.+++
T Consensus 174 ~~~Dv~I~iS~sg~~~~~~~~~-~~ak~ 200 (278)
T PRK11557 174 SPDDLLLAISYSGERRELNLAA-DEALR 200 (278)
T ss_pred CCCCEEEEEcCCCCCHHHHHHH-HHHHH
Confidence 3567789999999766 44444 44444
No 45
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 contains an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domains of both SHC and IRS-1, for example, bind to a NPXpY sequence. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=24.89 E-value=98 Score=22.32 Aligned_cols=19 Identities=11% Similarity=-0.081 Sum_probs=15.1
Q ss_pred CchhHHHHHHHHHHHHHhc
Q 039384 13 NSLILPVPDVQEYCEDKLD 31 (104)
Q Consensus 13 ~gR~EIv~Av~~~~~~v~~ 31 (104)
+||.+++.|+|++-...+.
T Consensus 19 ~g~~~~~~A~rrir~~~ka 37 (140)
T cd01270 19 NTRAEIVAAMRRIRYEFKA 37 (140)
T ss_pred CCcCHHHHHHHHHHHHHHH
Confidence 7899999999998755443
No 46
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=24.05 E-value=83 Score=20.29 Aligned_cols=32 Identities=6% Similarity=-0.234 Sum_probs=26.5
Q ss_pred CCCCCCeEEecCCchhHHHHHHHHHHHHHhcC
Q 039384 1 MHKSDDVQPLKINSLILPVPDVQEYCEDKLDG 32 (104)
Q Consensus 1 ~~~~~~~~a~~Y~gR~EIv~Av~~~~~~v~~g 32 (104)
+++++.|+-+++|+-.-+.+.+.....++...
T Consensus 2 i~~~~~i~i~G~G~s~~~A~~~~~~l~~~~~~ 33 (131)
T PF01380_consen 2 IAKAKRIYIYGSGSSYGVAQYAALKLQKLGRI 33 (131)
T ss_dssp HTTSSEEEEEESTHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEEEcchHHHHHHHHHHHHHHhcCc
Confidence 36889999999999999998888888666543
No 47
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.85 E-value=1.8e+02 Score=21.33 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=19.6
Q ss_pred CCCCCCHHHHHhhhhcCCCCCCcEEEeccCC
Q 039384 42 EDTIKKLVDVEKHMFMAVAPDPDITIRSSGE 72 (104)
Q Consensus 42 ~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE 72 (104)
....||++.|.+.|.-. -+++|.-||
T Consensus 98 De~~iTpE~fk~Rm~Le-----~v~~~pdGe 123 (156)
T COG4296 98 DEQPITPESFKERMALE-----NVMLYPDGE 123 (156)
T ss_pred cCCccCHHHHHHHhhhh-----ceEeccCCc
Confidence 35579999999998643 367777787
No 48
>PF09545 RE_AccI: AccI restriction endonuclease; InterPro: IPR019054 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease AccI, which recognises and cleaves the double-stranded sequence GT^MKAC.
Probab=22.65 E-value=75 Score=26.24 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=13.0
Q ss_pred HHhhhhcCCCCCCcEEEeccCC
Q 039384 51 VEKHMFMAVAPDPDITIRSSGE 72 (104)
Q Consensus 51 i~~~L~~~~~PdpDLlIRTSGE 72 (104)
+++.|++. ...|||||--..+
T Consensus 88 ~Q~elnTI-gKRPDlLiF~~~~ 108 (366)
T PF09545_consen 88 LQRELNTI-GKRPDLLIFKKSD 108 (366)
T ss_pred HHHHhhcc-CCCCcEEEEeccc
Confidence 34444443 3689999976544
No 49
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.55 E-value=1.5e+02 Score=17.64 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=15.0
Q ss_pred CCCCeEEecCCchh-HHHHHHHHH
Q 039384 3 KSDDVQPLKINSLI-LPVPDVQEY 25 (104)
Q Consensus 3 ~~~~~~a~~Y~gR~-EIv~Av~~~ 25 (104)
+.|=+++++++|+. |+..+++.+
T Consensus 47 ~~d~~i~iS~sg~t~~~~~~~~~a 70 (87)
T cd04795 47 KGDVVIALSYSGRTEELLAALEIA 70 (87)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Confidence 34558999999864 455555544
No 50
>PF08632 Zds_C: Activator of mitotic machinery Cdc14 phosphatase activation C-term; InterPro: IPR013941 This region of the Zds1 protein is critical for sporulation and has also been shown to suppress the calcium sensitivity of Zds1 deletions []. The C-terminal motif is common to both Zds1 and Zds2 proteins, both of which are putative interactors of Cdc55 and are required for the completion of mitotic exit and cytokinesis. They both contribute to timely Cdc14 activation during mitotic exit and are required downstream of separase to facilitate nucleolar Cdc14 release[].
Probab=22.45 E-value=16 Score=22.39 Aligned_cols=9 Identities=44% Similarity=0.914 Sum_probs=6.4
Q ss_pred CCCcchhhh
Q 039384 75 PSNFLLWQT 83 (104)
Q Consensus 75 LSnFLlWQ~ 83 (104)
|||||-|=.
T Consensus 41 lSNfMy~YL 49 (53)
T PF08632_consen 41 LSNFMYWYL 49 (53)
T ss_pred HHHHHHHHH
Confidence 688887743
No 51
>KOG4458 consensus Nitric oxide synthase-binding protein, contains PTB domain [Signal transduction mechanisms]
Probab=22.38 E-value=36 Score=22.05 Aligned_cols=17 Identities=18% Similarity=0.026 Sum_probs=13.9
Q ss_pred CCchhHHHHHHHHHHHH
Q 039384 12 INSLILPVPDVQEYCED 28 (104)
Q Consensus 12 Y~gR~EIv~Av~~~~~~ 28 (104)
-++|-||+.|+|++.-+
T Consensus 49 p~srieivaamrrir~~ 65 (78)
T KOG4458|consen 49 PGSRIEIVAAMRRIRVE 65 (78)
T ss_pred CCCeeehhHhhhhheee
Confidence 37899999999998543
No 52
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=22.31 E-value=1.3e+02 Score=20.93 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=18.4
Q ss_pred CCCCCeEEecCCchhHHHHHHHHHHHH
Q 039384 2 HKSDDVQPLKINSLILPVPDVQEYCED 28 (104)
Q Consensus 2 ~~~~~~~a~~Y~gR~EIv~Av~~~~~~ 28 (104)
.+.|=+++++|+|+.+-+-.+-+.+++
T Consensus 78 ~~~D~~i~iS~sG~t~~~~~~~~~a~~ 104 (154)
T TIGR00441 78 QKGDVLLGISTSGNSKNVLKAIEAAKD 104 (154)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456778999999986655544444444
No 53
>PRK13936 phosphoheptose isomerase; Provisional
Probab=20.92 E-value=1.4e+02 Score=21.80 Aligned_cols=27 Identities=7% Similarity=0.040 Sum_probs=17.9
Q ss_pred CCCCCeEEecCCchhHHHHHHHHHHHH
Q 039384 2 HKSDDVQPLKINSLILPVPDVQEYCED 28 (104)
Q Consensus 2 ~~~~~~~a~~Y~gR~EIv~Av~~~~~~ 28 (104)
.+.|=+++++|+|+..-+-.+-+.+++
T Consensus 110 ~~~Dv~i~iS~sG~t~~~~~~~~~ak~ 136 (197)
T PRK13936 110 QPGDVLLAISTSGNSANVIQAIQAAHE 136 (197)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHH
Confidence 356778999999987744444444443
No 54
>KOG1620 consensus Inositol polyphosphate multikinase, component of the ARGR transcription regulatory complex [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=20.45 E-value=46 Score=26.49 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=31.5
Q ss_pred CCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcceeEEeccCCCc
Q 039384 45 IKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALWL 96 (104)
Q Consensus 45 ~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~yael~f~~~lWP 96 (104)
+.+++-+.+++.....+ -=++.|. ||+|+-.|+.......|.+++|.
T Consensus 115 dAS~eK~~~q~~Kc~~t----Ts~~LG~-Ri~GmqV~~~~~~~~~~~~k~~g 161 (284)
T KOG1620|consen 115 DASEEKRARQLAKCTQT----TSASLGV-RICGMQVYEAENNSYVFRSKYYG 161 (284)
T ss_pred ccCHHHHHHHHHHhhcc----cceeece-EEeccEEEeccCceEEecchhcc
Confidence 45566666665421111 0133454 99999999999899999999986
No 55
>PF12359 DUF3645: Protein of unknown function (DUF3645) ; InterPro: IPR022105 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a conserved HPD sequence motif.
Probab=20.27 E-value=62 Score=18.15 Aligned_cols=16 Identities=6% Similarity=-0.020 Sum_probs=10.0
Q ss_pred CCCCCCeEEecCCchh
Q 039384 1 MHKSDDVQPLKINSLI 16 (104)
Q Consensus 1 ~~~~~~~~a~~Y~gR~ 16 (104)
||.+-.-+|++|-+|+
T Consensus 1 l~~~R~~lAVPf~akd 16 (34)
T PF12359_consen 1 LDPSRTRLAVPFRAKD 16 (34)
T ss_pred CCcCCceeeeeeecCC
Confidence 4555566777776654
Done!