Query 039384
Match_columns 104
No_of_seqs 143 out of 1049
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 15:25:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sgv_B Undecaprenyl pyrophosph 100.0 5.1E-44 1.7E-48 275.9 7.7 90 7-103 140-229 (253)
2 4h8e_A Undecaprenyl pyrophosph 100.0 4.3E-44 1.5E-48 276.7 7.3 90 7-103 147-236 (256)
3 3qas_B Undecaprenyl pyrophosph 100.0 1E-42 3.4E-47 268.4 8.0 90 7-103 140-229 (253)
4 1f75_A Undecaprenyl pyrophosph 100.0 1.1E-42 3.8E-47 267.5 7.9 90 7-103 143-232 (249)
5 2vg0_A Short-chain Z-isoprenyl 100.0 8.1E-43 2.8E-47 265.0 6.2 90 7-103 124-217 (227)
6 2d2r_A Undecaprenyl pyrophosph 100.0 2.9E-42 1E-46 264.8 6.4 89 7-103 138-226 (245)
7 2vg3_A Undecaprenyl pyrophosph 100.0 5.7E-42 2E-46 267.9 7.6 90 7-103 178-267 (284)
8 3ugs_B Undecaprenyl pyrophosph 100.0 1.4E-40 4.8E-45 253.1 7.5 81 7-103 129-209 (225)
9 2ksn_A Ubiquitin domain-contai 64.9 4.7 0.00016 28.2 2.8 25 11-35 51-75 (137)
10 2h7b_A Core-binding factor, ML 56.9 14 0.00047 24.7 3.9 38 16-65 25-64 (105)
11 2p6v_A Transcription initiatio 55.7 14 0.0005 25.0 3.9 40 14-65 38-79 (114)
12 1xho_A Chorismate mutase; sout 47.4 14 0.00048 26.1 2.9 28 9-36 40-68 (148)
13 2w56_A VC0508; unknown functio 43.2 12 0.0004 26.2 1.9 37 58-101 55-93 (147)
14 2v1l_A Hypothetical protein; p 41.4 12 0.00042 26.1 1.8 37 58-101 55-93 (148)
15 1dbf_A Protein (chorismate mut 39.5 17 0.00056 25.1 2.2 28 9-36 11-39 (127)
16 1ufy_A Chorismate mutase; shik 39.3 20 0.00067 24.5 2.5 28 9-36 10-38 (122)
17 1q1v_A DEK protein; winged-hel 36.5 15 0.00052 22.4 1.5 40 13-65 12-51 (70)
18 3o71_B Peptide of deleted in c 31.4 22 0.00074 18.2 1.3 11 58-68 7-17 (27)
19 1jeo_A MJ1247, hypothetical pr 27.9 50 0.0017 21.8 3.1 22 3-24 82-104 (180)
20 2ab1_A Hypothetical protein; H 25.3 58 0.002 21.5 3.0 28 43-74 46-74 (122)
21 2i2w_A Phosphoheptose isomeras 23.9 84 0.0029 21.6 3.8 23 3-25 131-154 (212)
22 3e7n_A D-ribose high-affinity 23.2 1.5E+02 0.005 20.0 4.8 32 44-80 105-136 (142)
No 1
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=100.00 E-value=5.1e-44 Score=275.85 Aligned_cols=90 Identities=26% Similarity=0.343 Sum_probs=87.4
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|+|++++++++|.++ +++||++.|+++||++++||||||||||||+|||||||||++||
T Consensus 140 nia~~YggR~EI~~Avr~ia~~v~~g~l~-------~~~I~e~~i~~~L~t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYs 212 (253)
T 3sgv_B 140 NIAANYGGRWDIVQGVRQLAEKVQQGNLQ-------PDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYA 212 (253)
T ss_dssp EEESSCCHHHHHHHHHHHHHHHHHHTSSC-------GGGCCHHHHHTTSTTTTSCCCCEEEEESSCCCCTTSCSGGGTTC
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCCC-------hhhCCHHHHHHhhcccCCCCCcEEEEecCCCcccCchHHHHcCE
Confidence 68999999999999999999999999998 68999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 213 ElyFtd~lWPdF~~~dl 229 (253)
T 3sgv_B 213 ELYFTDVLWPDFDEQDF 229 (253)
T ss_dssp EEEECCSCGGGCCHHHH
T ss_pred EEEECCCCCccCCHHHH
Confidence 99999999999999875
No 2
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=4.3e-44 Score=276.66 Aligned_cols=90 Identities=23% Similarity=0.406 Sum_probs=87.4
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|++++++++++|.++ +++||++.|+++||++++||||||||||||+|||||||||++||
T Consensus 147 nia~~YggR~EI~~Avr~i~~~v~~g~l~-------~~~I~e~~i~~~L~t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYs 219 (256)
T 4h8e_A 147 IFAINYGGRAELVHSIKNMFDELHQQGLN-------SDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYS 219 (256)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHTTCC-------GGGCCHHHHHTTSTTTTSCCCSEEEECSSCCCCTTSSTTTTTTC
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHcCCCC-------hhhCCHHHHHHhCCCCCCCCCcEEEEcCCCCcccCchHHHHcCe
Confidence 68999999999999999999999999998 68999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 220 ElyF~d~lWPdF~~~dl 236 (256)
T 4h8e_A 220 EFIFNQKLWPDFDEDEL 236 (256)
T ss_dssp EEEECCSCGGGCCHHHH
T ss_pred EEEECCCCCccCCHHHH
Confidence 99999999999998875
No 3
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=100.00 E-value=1e-42 Score=268.45 Aligned_cols=90 Identities=26% Similarity=0.343 Sum_probs=87.3
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|+|++++++++|.++ +++||++.|+++||++++||||||||||||+|||||||||++||
T Consensus 140 nia~~YgGR~EIv~A~r~l~~~v~~g~l~-------~~~I~e~~i~~~L~t~~~PdpDLlIRTsGe~RLSnFLlWQ~ays 212 (253)
T 3qas_B 140 NIAANYGGRWDIVQGVRQLAEKVQQGNLQ-------PDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYA 212 (253)
T ss_dssp EEESSCCHHHHHHHHHHHHHHHHHTTSCC-------GGGCCHHHHHTTSTTTTSCCCCEEEECSSCCCCTTSCSGGGTTC
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCCC-------hHHCCHHHHHHhhccCCCCCCcEEEEcCCCccccCCchhhhcCE
Confidence 58999999999999999999999999998 68999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 213 ElyF~~~lWPdF~~~~~ 229 (253)
T 3qas_B 213 ELYFTDVLWPDFDEQDF 229 (253)
T ss_dssp EEEECCSCGGGCCHHHH
T ss_pred EEEECCCCCCcCCHHHH
Confidence 99999999999998875
No 4
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=100.00 E-value=1.1e-42 Score=267.54 Aligned_cols=90 Identities=28% Similarity=0.377 Sum_probs=87.3
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|+|++++++++|.++ +++||++.|+++||++++||||||||||||+|||||||||++||
T Consensus 143 nia~~YggR~eIv~A~r~l~~~v~~g~l~-------~~~I~e~~i~~~L~t~~~PdpDLlIRTsGe~RLSnFLlWQ~ays 215 (249)
T 1f75_A 143 VFALNYGGRKEIISAVQLIAERYKSGEIS-------LDEISETHFNEYLFTANMPDPELLIRTSGEERLSNFLIWQCSYS 215 (249)
T ss_dssp EEECSCCHHHHHHHHHHHHHHHHHTTSSC-------GGGCSHHHHGGGSTTTTSCCCSEEEECTTCCBCCSCSTTTTTTC
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCCC-------hHhCCHHHHHHhhccCCCCCCcEEEEcCCCccccCCchhhhhce
Confidence 58999999999999999999999999998 68999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 216 ElyF~~~lWPdF~~~~~ 232 (249)
T 1f75_A 216 EFVFIDEFWPDFNEESL 232 (249)
T ss_dssp EEEECCSCGGGCCHHHH
T ss_pred EEEECCCCCCcCCHHHH
Confidence 99999999999999875
No 5
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=100.00 E-value=8.1e-43 Score=264.98 Aligned_cols=90 Identities=23% Similarity=0.393 Sum_probs=87.0
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCC----CCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhh
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTI----KKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQ 82 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~----It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ 82 (104)
.+|++||||+||++|+|++++++++|.++ +++ ||++.|+++||++++||||||||||||+|||||||||
T Consensus 124 nia~~YggR~eI~~A~r~l~~~v~~g~l~-------~~~~~~~I~e~~i~~~L~t~~~pdpDLlIRTsGe~RLSnFLlWQ 196 (227)
T 2vg0_A 124 NVAVGYGGRREIVDAVRALLSKELANGAT-------AEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQ 196 (227)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHTTCC-------HHHHHHHCCHHHHHHHSTTTTSCCCSEEEECTTCCCCTTTTTTT
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCCC-------hhHhhccCCHHHHHHhhccCCCCCCcEEEEcCCCccccCcchHH
Confidence 58999999999999999999999999998 678 9999999999999999999999999999999999999
Q ss_pred hcceeEEeccCCCcCCccccc
Q 039384 83 TSNCSLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 83 ~~yael~f~~~lWPdf~~~~~ 103 (104)
++||||||++++||||++.++
T Consensus 197 ~aysElyf~~~lWPdF~~~~~ 217 (227)
T 2vg0_A 197 SAYSEMWFTEAHWPAFRHVDF 217 (227)
T ss_dssp TTTCEEEECSSCGGGCCHHHH
T ss_pred HcCeEEEECCCCCCCCCHHHH
Confidence 999999999999999999875
No 6
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=100.00 E-value=2.9e-42 Score=264.78 Aligned_cols=89 Identities=25% Similarity=0.313 Sum_probs=85.5
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|+|++++++++ .++ +++||++.|+++||++++||||||||||||+|||||||||++||
T Consensus 138 nia~~YggR~EIv~A~r~i~~~v~~-~l~-------~~~I~e~~i~~~L~t~~~PdpDLlIRTsGe~RLSnFLlWQ~ays 209 (245)
T 2d2r_A 138 VLALNYGSKNELSRAFKSLLESPPS-NIS-------LLESLENEISNRLDTRNLPEVDLLLRTGGEMRLSNFLLWQSSYA 209 (245)
T ss_dssp EEECSCCHHHHHHHHHHHHHHSCCT-TGG-------GCSCCHHHHHTTSTTTTSCCCSEEEECSSCCCCTTSSTTTTTTC
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHh-cCC-------hhhCCHHHHHHHhccCCCCCCcEEEEcCCCccccCCcchhhcce
Confidence 5899999999999999999999888 777 68999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 210 ElyF~~~lWPdF~~~~~ 226 (245)
T 2d2r_A 210 ELFFTPILWPDFTPKDL 226 (245)
T ss_dssp EEEECCSCGGGCCHHHH
T ss_pred EEEECCCCCCcCCHHHH
Confidence 99999999999999875
No 7
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=100.00 E-value=5.7e-42 Score=267.91 Aligned_cols=90 Identities=21% Similarity=0.333 Sum_probs=87.3
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|+|++++++++|.++ +++||++.|+++||++++||||||||||||+|||||||||++||
T Consensus 178 nia~~YgGR~EIv~A~r~la~~v~~g~l~-------~~dI~e~~i~~~L~t~~~PdPDLlIRTsGE~RLSnFLlWQ~aYs 250 (284)
T 2vg3_A 178 NYCVNYGGRTEITEATREIAREVAAGRLN-------PERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYA 250 (284)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHTTSSC-------GGGCCHHHHHHHSSSTTCCCCSEEEECTTCCCCTTTTTTTTTTC
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCCC-------hHHCCHHHHHHHhccCCCCCCcEEEeCCCCccccCCCchhhcce
Confidence 58999999999999999999999999998 68999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 251 ElyF~d~lWPdF~~~df 267 (284)
T 2vg3_A 251 EYIFQDKLWPDYDRRDL 267 (284)
T ss_dssp EEEECCSCGGGCCHHHH
T ss_pred EEEECCCCCCcCCHHHH
Confidence 99999999999999875
No 8
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=100.00 E-value=1.4e-40 Score=253.12 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=76.0
Q ss_pred eEEecCCchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcchhhhcce
Q 039384 7 VQPLKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNC 86 (104)
Q Consensus 7 ~~a~~Y~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLlWQ~~ya 86 (104)
.+|++||||+||++|+|++ +++| ++||++.|+++||++ ||||||||||||+|||||||||++||
T Consensus 129 nia~~YggR~EI~~A~~~i---v~~g-----------~~I~e~~i~~~L~t~--PdpDLlIRTsGE~RLSnFLLWQ~aYs 192 (225)
T 3ugs_B 129 NLAISYGARDEIIRAAKRV---IEKK-----------LELNEENLTQNLDLP--LDVDLMLRVGNAKRLSNFLLWQCSYA 192 (225)
T ss_dssp EEEEEECHHHHHHHHHHHH---HHTT-----------CCCSHHHHHHTSSSC--SCCSEEEEESSCCSCTTSSTTTTTTC
T ss_pred EEeeCCCCHHHHHHHHHHH---HHhc-----------CcCCHHHHHHhcCCC--CCCCEEEEeCCcccccCcchhhhhce
Confidence 6899999999999999999 4444 479999999999998 99999999999999999999999999
Q ss_pred eEEeccCCCcCCccccc
Q 039384 87 SLYSPAALWLEEKKKRQ 103 (104)
Q Consensus 87 el~f~~~lWPdf~~~~~ 103 (104)
||||++++||||++.|+
T Consensus 193 ElyF~d~lWPdF~~~~l 209 (225)
T 3ugs_B 193 EIYFSETLFPSLTKREF 209 (225)
T ss_dssp EEEEECSCSTTCCHHHH
T ss_pred EEEECCCCCccCCHHHH
Confidence 99999999999998875
No 9
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=64.92 E-value=4.7 Score=28.24 Aligned_cols=25 Identities=0% Similarity=-0.173 Sum_probs=21.7
Q ss_pred cCCchhHHHHHHHHHHHHHhcCCCc
Q 039384 11 KINSLILPVPDVQEYCEDKLDGSQA 35 (104)
Q Consensus 11 ~Y~gR~EIv~Av~~~~~~v~~g~l~ 35 (104)
.|+||.||=+|.|..++.++.|.+.
T Consensus 51 ~~~Gr~EIW~ALraA~~~~e~~Dl~ 75 (137)
T 2ksn_A 51 AFEGRKEIWDALKAAAHAFESNDHE 75 (137)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCHH
Confidence 5999999999999999887776654
No 10
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=56.87 E-value=14 Score=24.73 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcC--CCCCCcE
Q 039384 16 ILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMA--VAPDPDI 65 (104)
Q Consensus 16 ~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~--~~PdpDL 65 (104)
-|+...||++++++..|++ +.|.|...|+.. -.|.|.|
T Consensus 25 pev~~~Vr~LVq~Ll~~~i------------~~EeFt~~Lq~~lns~pqP~l 64 (105)
T 2h7b_A 25 PEIGERVRTLVLGLVNSTL------------TIEEFHSKLQEATNFPLRPFV 64 (105)
T ss_dssp HHHHHHHHHHHHHHHTSSC------------CHHHHHHHHHHHSSSSCCSSS
T ss_pred hHHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHhcCCCCcch
Confidence 5888999999999888754 578899999843 3355544
No 11
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=55.72 E-value=14 Score=24.96 Aligned_cols=40 Identities=20% Similarity=0.383 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhc--CCCCCCcE
Q 039384 14 SLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFM--AVAPDPDI 65 (104)
Q Consensus 14 gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~--~~~PdpDL 65 (104)
.--|+...||++++++..|++ +.|.|...|+. .-.|.|.|
T Consensus 38 ~spev~~~Vr~LVq~Ll~~~i------------~~EeFt~~Lq~~lns~pqP~L 79 (114)
T 2p6v_A 38 QSTETAANVXELVQNLLDGXI------------EAEDFTSRLYRELNSSPQPYL 79 (114)
T ss_dssp SCHHHHHHHHHHHHHHHTTSS------------CHHHHHHHHHHHTTCCCCTTH
T ss_pred cChHHHHHHHHHHHHHHHccC------------CHHHHHHHHHHHHcCCCCcch
Confidence 557899999999999888754 57789999984 33455554
No 12
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=47.42 E-value=14 Score=26.06 Aligned_cols=28 Identities=11% Similarity=-0.015 Sum_probs=22.1
Q ss_pred EecCCchhHHHHHHHHHHHHH-hcCCCcc
Q 039384 9 PLKINSLILPVPDVQEYCEDK-LDGSQAL 36 (104)
Q Consensus 9 a~~Y~gR~EIv~Av~~~~~~v-~~g~l~~ 36 (104)
.+.-+.+++|..|++++++++ +++++.+
T Consensus 40 Tve~Nt~e~I~~At~ELl~eii~~N~l~~ 68 (148)
T 1xho_A 40 TVSDNTADEIVAETQKLLKEMAEKNGLEE 68 (148)
T ss_dssp ECSSSSHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHcCCCH
Confidence 456789999999999999876 4566653
No 13
>2w56_A VC0508; unknown function; 1.90A {Vibrio cholerae} PDB: 2w56_B
Probab=43.16 E-value=12 Score=26.21 Aligned_cols=37 Identities=11% Similarity=0.124 Sum_probs=28.3
Q ss_pred CCCCCCcEEEe-ccCCcCCCCcchhhhcc-eeEEeccCCCcCCccc
Q 039384 58 AVAPDPDITIR-SSGETRPSNFLLWQTSN-CSLYSPAALWLEEKKK 101 (104)
Q Consensus 58 ~~~PdpDLlIR-TSGE~RLSnFLlWQ~~y-ael~f~~~lWPdf~~~ 101 (104)
++.-|+.|=+. ++++ .||..| |.|-+....||++-++
T Consensus 55 GGfHPVEIrl~~~~~~-------~W~i~YITDFsY~G~~~pELeke 93 (147)
T 2w56_A 55 GGFHPVEMAICQTSTG-------EWSIEYITDFAYMGNYYPELERN 93 (147)
T ss_dssp BCSCCEEEEEEECTTS-------CEEEEEEEEEEEC--CCCCEEEE
T ss_pred CCcCCEEEEEEecCCC-------cEEEEEEEeecccCCCCcceeeE
Confidence 46678888888 6666 599998 9999999999997654
No 14
>2v1l_A Hypothetical protein; pathogenicity island, unknown function; 2.13A {Vibrio cholerae}
Probab=41.44 E-value=12 Score=26.14 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=27.4
Q ss_pred CCCCCCcEEEe-ccCCcCCCCcchhhhcc-eeEEeccCCCcCCccc
Q 039384 58 AVAPDPDITIR-SSGETRPSNFLLWQTSN-CSLYSPAALWLEEKKK 101 (104)
Q Consensus 58 ~~~PdpDLlIR-TSGE~RLSnFLlWQ~~y-ael~f~~~lWPdf~~~ 101 (104)
++.-|+.|=+. ++++ .||..| |.|-+....||++-++
T Consensus 55 GGfHPVEIrl~~~~~~-------~W~i~YITDFsY~G~~~pELeke 93 (148)
T 2v1l_A 55 GGFHPVEIALSQSSDG-------QWCIEYITDFAYVGNHFPELERC 93 (148)
T ss_dssp BCCCCEEEEEEECSSS-------CEEEEEEEEEEEC---CCCEEEE
T ss_pred CCcCCEEEEEEecCCC-------cEEEEEEEeecccCCCCcceeeE
Confidence 46678888888 6666 599998 9999999999997654
No 15
>1dbf_A Protein (chorismate mutase); shikimate pathway, isomerase; 1.30A {Bacillus subtilis} SCOP: d.79.1.2 PDB: 1com_A 2chs_A 2cht_A* 1fnj_A 1fnk_A
Probab=39.53 E-value=17 Score=25.06 Aligned_cols=28 Identities=4% Similarity=-0.037 Sum_probs=21.9
Q ss_pred EecCCchhHHHHHHHHHHHHH-hcCCCcc
Q 039384 9 PLKINSLILPVPDVQEYCEDK-LDGSQAL 36 (104)
Q Consensus 9 a~~Y~gR~EIv~Av~~~~~~v-~~g~l~~ 36 (104)
.+.-+++++|..|++++++++ +++++.+
T Consensus 11 tv~~Nt~e~I~~at~eLl~~i~~~N~l~~ 39 (127)
T 1dbf_A 11 TVERDTEEEILQKTKQLLEKIIEENHTKP 39 (127)
T ss_dssp ECSSCCHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHcCCCH
Confidence 456789999999999999876 4556653
No 16
>1ufy_A Chorismate mutase; shikimate pathway, mutant, riken structur genomics/proteomics initiative, RSGI, structural genomics,; HET: MES; 0.96A {Thermus thermophilus} SCOP: d.79.1.2 PDB: 1ode_A* 1ui9_A*
Probab=39.31 E-value=20 Score=24.51 Aligned_cols=28 Identities=4% Similarity=-0.161 Sum_probs=22.0
Q ss_pred EecCCchhHHHHHHHHHHHHH-hcCCCcc
Q 039384 9 PLKINSLILPVPDVQEYCEDK-LDGSQAL 36 (104)
Q Consensus 9 a~~Y~gR~EIv~Av~~~~~~v-~~g~l~~ 36 (104)
.+.-+++++|..|++++++++ +++++++
T Consensus 10 tv~~n~~e~I~~at~eLl~~i~~~N~l~~ 38 (122)
T 1ufy_A 10 TVEEDTPEAIHQATRELLLKMLEANGIQS 38 (122)
T ss_dssp ECSSSSHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 456789999999999999876 4556663
No 17
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=36.54 E-value=15 Score=22.40 Aligned_cols=40 Identities=8% Similarity=0.022 Sum_probs=29.9
Q ss_pred CchhHHHHHHHHHHHHHhcCCCccccccCCCCCCCHHHHHhhhhcCCCCCCcE
Q 039384 13 NSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDI 65 (104)
Q Consensus 13 ~gR~EIv~Av~~~~~~v~~g~l~~~~~~~~~~~It~~~i~~~L~~~~~PdpDL 65 (104)
-+.++|..+++++++.+ + .+.+|...+.+.|... +|..||
T Consensus 12 Psd~ei~~~I~~IL~~a-----D-------L~tvT~K~VR~~Le~~-~pg~dL 51 (70)
T 1q1v_A 12 PTDEELKETIKKLLASA-----N-------LEEVTMKQICKKVYEN-YPTYDL 51 (70)
T ss_dssp CCHHHHHHHHHHHHTTS-----C-------GGGCCHHHHHHHHHHH-CSSSCC
T ss_pred cCHHHHHHHHHHHHHhC-----C-------HHHHhHHHHHHHHHHH-ccCCCC
Confidence 46789999999998542 2 3578999999998643 566776
No 18
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex, kinase, DCC, transferase-protein BI complex; 1.95A {Rattus norvegicus}
Probab=31.45 E-value=22 Score=18.17 Aligned_cols=11 Identities=27% Similarity=0.308 Sum_probs=8.7
Q ss_pred CCCCCCcEEEe
Q 039384 58 AVAPDPDITIR 68 (104)
Q Consensus 58 ~~~PdpDLlIR 68 (104)
.++.+|||.|-
T Consensus 7 kDlkppdlwih 17 (27)
T 3o71_B 7 KDLRPPDLWIH 17 (27)
T ss_pred CCCCCcceeee
Confidence 46779999985
No 19
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=27.86 E-value=50 Score=21.80 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=15.6
Q ss_pred CCCCeEEecCCchh-HHHHHHHH
Q 039384 3 KSDDVQPLKINSLI-LPVPDVQE 24 (104)
Q Consensus 3 ~~~~~~a~~Y~gR~-EIv~Av~~ 24 (104)
+.|=|++++++|+. |++.+++.
T Consensus 82 ~~d~vi~iS~sG~t~~~~~~~~~ 104 (180)
T 1jeo_A 82 KDDLLILISGSGRTESVLTVAKK 104 (180)
T ss_dssp TTCEEEEEESSSCCHHHHHHHHH
T ss_pred CCCEEEEEeCCCCcHHHHHHHHH
Confidence 45668999999985 55555544
No 20
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=25.31 E-value=58 Score=21.50 Aligned_cols=28 Identities=7% Similarity=-0.075 Sum_probs=20.2
Q ss_pred CCCCCHHHHHhhhhcCCCCCCcEEEe-ccCCcC
Q 039384 43 DTIKKLVDVEKHMFMAVAPDPDITIR-SSGETR 74 (104)
Q Consensus 43 ~~~It~~~i~~~L~~~~~PdpDLlIR-TSGE~R 74 (104)
.++|+++.++..|. |.||+||= ||...+
T Consensus 46 ~~~l~~~~l~~ll~----~~~evliiGtG~~~~ 74 (122)
T 2ab1_A 46 SPGVQPADVKEVVE----KGVQTLVIGRGMSEA 74 (122)
T ss_dssp SSCCCHHHHHHHHT----TCCSEEEEEECSSCC
T ss_pred hhHCCHHHHHHHhh----CCCCEEEECCCCCCc
Confidence 67899999997764 56888765 554444
No 21
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=23.90 E-value=84 Score=21.58 Aligned_cols=23 Identities=4% Similarity=-0.013 Sum_probs=15.7
Q ss_pred CCCCeEEecCCchh-HHHHHHHHH
Q 039384 3 KSDDVQPLKINSLI-LPVPDVQEY 25 (104)
Q Consensus 3 ~~~~~~a~~Y~gR~-EIv~Av~~~ 25 (104)
+.|=|++++++|+. +++.+++..
T Consensus 131 ~~DvvI~iS~SG~t~~~i~~~~~a 154 (212)
T 2i2w_A 131 EGDVLLGISTSGNSANVIKAIAAA 154 (212)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
Confidence 34568999999985 455555543
No 22
>3e7n_A D-ribose high-affinity transport system; D-ribose transport system, RBSD,csgid, structural genomics; 2.45A {Salmonella typhimurium}
Probab=23.15 E-value=1.5e+02 Score=20.05 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=21.4
Q ss_pred CCCCHHHHHhhhhcCCCCCCcEEEeccCCcCCCCcch
Q 039384 44 TIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLL 80 (104)
Q Consensus 44 ~~It~~~i~~~L~~~~~PdpDLlIRTSGE~RLSnFLl 80 (104)
+-|.-+.|.+.. ...-.+||||--+.-+|++|
T Consensus 105 ~~i~~~~Fy~~a-----~~a~aVVrTGE~~pYaNiIL 136 (142)
T 3e7n_A 105 SYTTHEQFKKLT-----ADSQAVIRSGECSPYANVIL 136 (142)
T ss_dssp EEECHHHHHHHH-----TTSSEEEECCCCSTTCCEEE
T ss_pred EEeCHHHHHHHH-----hcceEEEECCCCCceeEEEE
Confidence 355666676554 35579999986555688775
Done!