RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 039384
         (104 letters)



>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Micrococcus luteus [TaxId: 1270]}
          Length = 229

 Score = 59.8 bits (144), Expect = 7e-13
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 50  DVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPAALWLE 97
              +++F A  PDP++ IR+SGE R SNFL+WQ S          W +
Sbjct: 166 HFNEYLFTANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPD 213


>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Escherichia coli [TaxId: 562]}
          Length = 228

 Score = 56.7 bits (136), Expect = 1e-11
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 10  LKINSLILPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRS 69
           L +N               +    +  +  +  D I +   + +H+ M      D+ IR+
Sbjct: 125 LTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDE-EMLNQHVCMHELAPVDLVIRT 183

Query: 70  SGETRPSNFLLWQTSNCSLYSPAALWLE 97
            GE R SNFLLWQ +   LY    LW +
Sbjct: 184 GGEHRISNFLLWQIAYAELYFTDVLWPD 211


>d2o5ha1 d.363.1.1 (A:1-131) Hypothetical protein NMB0513 {Neisseria
           meningitidis [TaxId: 487]}
          Length = 131

 Score = 25.2 bits (55), Expect = 1.3
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 35  ALKEKIDEDTIKKLVDVEKHMFMAVAPDPDITIRSSGETRPSNFLLWQTSNCSLYSPA-A 93
               +I   T ++       +F  V P+ +I         P +  +W T       PA A
Sbjct: 68  QRDGQIIGHTPEEWEQ----IFREVWPEYEIEPNPLPGYAPFDIGMWLTVEA----PAYA 119

Query: 94  LWLE 97
           +W++
Sbjct: 120 VWID 123


>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
          (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
          Length = 444

 Score = 25.0 bits (53), Expect = 2.1
 Identities = 5/37 (13%), Positives = 13/37 (35%)

Query: 23 QEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAV 59
          Q         ++   +KID D +     +  ++ +  
Sbjct: 44 QSAATVIQRAAKTAIDKIDFDALATATGLAGNIAIPF 80


>d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis,
           brefeldin A esterase [TaxId: 1423]}
          Length = 358

 Score = 24.4 bits (51), Expect = 3.9
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 18  PVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVDVEKHMFMAVAPD-PDITIR---SSGET 73
            +P V        DG QA+ + I  D      DVE      +  D  +IT+     +G  
Sbjct: 44  DLPTVLAAVGASHDGFQAVYDSIALDLPTDRDDVETSTETILGVDGNEITLHVFRPAGVE 103

Query: 74  RPSNFLLWQ 82
                L++ 
Sbjct: 104 GVLPGLVYT 112


>d1qhda2 b.19.1.1 (A:149-332) vp6, the major capsid protein of
          group A rotavirus {Bovine rotavirus [TaxId: 10927]}
          Length = 184

 Score = 23.7 bits (51), Expect = 4.5
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 36 LKEKIDEDTIKKLVDVEKHMFMAVAPDPD 64
          L+  +   TI  L D E+  F  V    D
Sbjct: 66 LRRVLTTATITLLPDAERFSFPRVITSAD 94


>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059
          {Vibrio cholerae [TaxId: 666]}
          Length = 201

 Score = 23.6 bits (51), Expect = 5.2
 Identities = 6/27 (22%), Positives = 8/27 (29%)

Query: 50 DVEKHMFMAVAPDPDITIRSSGETRPS 76
          DV  H+ +    D   TI         
Sbjct: 48 DVVIHLVLESTRDYSRTITVEANEISD 74


>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 382

 Score = 23.4 bits (50), Expect = 7.5
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 17 LPVPDVQEYCEDKLDGSQALKEKIDEDTIKKLVD 50
          LPVP +Q+     L   Q L  +      + +V 
Sbjct: 7  LPVPPLQQTLATYLQCMQHLVPEEQFRKSQAIVK 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0495    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 396,726
Number of extensions: 16700
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 20
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.4 bits)