BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039385
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
+L C + L +I + + VHR+ VVD+ ++ G+VSL+D+++ L
Sbjct: 275 VLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL 321
>pdb|2UV4|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
pdb|2UV5|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
+L C + L +I + + VHR+ VVD+ ++ G+VSL+D+++ L
Sbjct: 103 VLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQAL 149
>pdb|2UV6|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
+L C + L +I + + VH++ VVD+ ++ G+VSL+D+++ L
Sbjct: 103 VLKCYLHETLETIINRLVEAEVHQLVVVDENDVVKGIVSLSDILQAL 149
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 18 NGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVD 77
NG+ LI + A D+ G + L L+ E L S+ + + TC +
Sbjct: 51 NGY-LINVYEAYDVLGLIKGGIYNDLSLSVGE--------ALMRRSDDFEG--VYTCTKN 99
Query: 78 SPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
LS ++ VHR +VVD L+G+++L+D+++ +
Sbjct: 100 DKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 139
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 30/62 (48%)
Query: 64 NTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA 123
N Q + +CQ+ +P+ +VI V V ++D+ L+ + D++ +++ I
Sbjct: 14 NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN 73
Query: 124 DF 125
D
Sbjct: 74 DL 75
>pdb|2UV7|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
+L C + L +I + + VH + VVD+ ++ G+VSL+D+++ L
Sbjct: 103 VLKCYLHETLETIINRLVEAEVHGLVVVDENDVVKGIVSLSDILQAL 149
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 18 NGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVD 77
NG+ LI + A D+ G + L L+ E L S+ + + TC +
Sbjct: 223 NGY-LINVYEAYDVLGLIKGGIYNDLSLSVGE--------ALMRRSDDFEG--VYTCTKN 271
Query: 78 SPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
LS ++ VHR +VVD L+G+++L+D+++ +
Sbjct: 272 DKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 311
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 30/62 (48%)
Query: 64 NTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA 123
N Q + +CQ+ +P+ +VI V V ++D+ L+ + D++ +++ I
Sbjct: 186 NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN 245
Query: 124 DF 125
D
Sbjct: 246 DL 247
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 18 NGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVD 77
NG+ LI + A D+ G + L L+ E L S+ + + TC +
Sbjct: 230 NGY-LINVYEAYDVLGLIKGGIYNDLSLSVGE--------ALMRRSDDFEG--VYTCTKN 278
Query: 78 SPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
LS ++ VHR +VVD L+G+++L+D+++ +
Sbjct: 279 DKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 318
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 30/62 (48%)
Query: 64 NTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA 123
N Q + +CQ+ +P+ +VI V V ++D+ L+ + D++ +++ I
Sbjct: 193 NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN 252
Query: 124 DF 125
D
Sbjct: 253 DL 254
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 18 NGWRLIGTFSASDLRGCHYAVLQTWLPLTALEFTQQVLTSPLFSESNTTQQRELLTCQVD 77
NG+ LI + A D+ G + L L+ E L S+ + + TC +
Sbjct: 51 NGY-LINVYEAYDVLGLIKGGIYNDLSLSVGE--------ALXRRSDDFEG--VYTCTKN 99
Query: 78 SPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
LS + VHR +VVD L+G+++L+D+++ +
Sbjct: 100 DKLSTIXDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 139
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 64 NTTQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVLRTSILA 123
N Q +CQ +P+ +VI V V ++D+ L+ + D++ +++ I
Sbjct: 14 NIITQDNXKSCQXTTPVIDVIQXLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN 73
Query: 124 DF 125
D
Sbjct: 74 DL 75
>pdb|2OUX|A Chain A, Crystal Structure Of The Soluble Part Of A Magnesium
Transporter
pdb|2OUX|B Chain B, Crystal Structure Of The Soluble Part Of A Magnesium
Transporter
Length = 286
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 92 VHRVWVVDQQRLLLGLVSLTDMIRVLRTSILAD 124
++ V+VVDQ+ L+G++SL D+I +++AD
Sbjct: 173 IYYVYVVDQENHLVGVISLRDLIVNDDDTLIAD 205
>pdb|2YZI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
pdb|2YZI|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 138
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMI----RVLRTSILAD 124
R L+T V++PL EV+ K + + + ++ + ++G+ +L+D++ R L T+I A+
Sbjct: 80 RNLITANVNTPLGEVLRKXAEHRIKHILIEEEGK-IVGIFTLSDLLEASRRRLETAISAE 138
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDM 113
T + +L+T + +PL E+ K + ++ VVD+ L GLV+ D+
Sbjct: 174 TPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDI 221
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 66 TQQRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDM 113
T + +L+T + +PL E+ K + ++ VVD+ L GLV+ D+
Sbjct: 154 TPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDI 201
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 73 TCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
TC+ L + VHR++VVD+ L G++SL D++ +
Sbjct: 269 TCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYI 313
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 73 TCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
TC+ L + VHR++VVD+ L G++SL D++ +
Sbjct: 268 TCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYI 312
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115
R ++T D P+ V K ++ V VVD R ++G+V+ D+ R
Sbjct: 72 RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISR 118
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIR 115
R ++T D P+ V K ++ V VVD R ++G+V+ D+ R
Sbjct: 70 RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISR 116
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 68 QRELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
+ ++T + ++ + E I LTK+V +V+ + L+ L++ D+IR L
Sbjct: 91 EENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRAL 140
>pdb|2I24|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Pbla8 Variable Domain
pdb|2I25|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Pbla8 Variable Domain In Complex With
Lysozyme
pdb|2I25|O Chain O, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Pbla8 Variable Domain In Complex With
Lysozyme
Length = 121
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 2 FWYKKPNVERNSISLGNGWRLIGTFS 27
+WY+KP RN S+ +G R + T +
Sbjct: 35 YWYRKPPGSRNEESISDGGRYVETVN 60
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 63 SNTTQQRELLTCQVDSPLSEVIGKALTKH-VHRVWVVDQQRLLLGLVSLTDMIRVL 117
S+ + +L+T V + LSE K L K+ + ++ +VD +L GL+++ D+ +V+
Sbjct: 178 SDVXTKEQLITAPVGTTLSEA-EKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI 232
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 63 SNTTQQRELLTCQVDSPLSEVIGKALTKH-VHRVWVVDQQRLLLGLVSLTDMIRVL 117
S+ + +L+T V + LSE K L K+ + ++ +VD +L GL+++ D+ +V+
Sbjct: 178 SDVMTKEQLITAPVGTTLSEA-EKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI 232
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 28/46 (60%)
Query: 69 RELLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMI 114
+E++T + E + + + R+ VVD++ L+GL++++D++
Sbjct: 158 KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLV 203
>pdb|1SHM|A Chain A, Convergent Solutions To Vhh Domain Stabilization From
Natural And In Vitro Evolution
pdb|1SHM|B Chain B, Convergent Solutions To Vhh Domain Stabilization From
Natural And In Vitro Evolution
pdb|1SHM|D Chain D, Convergent Solutions To Vhh Domain Stabilization From
Natural And In Vitro Evolution
pdb|1SHM|E Chain E, Convergent Solutions To Vhh Domain Stabilization From
Natural And In Vitro Evolution
Length = 127
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 1 MFWYKK-PNVERNSISLGNGWRLIGTFSASDLRG 33
M W+++ P ER S++ N W GT+ AS +RG
Sbjct: 34 MGWFRQAPGKERESVAAIN-WGSAGTYYASSVRG 66
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 71 LLTCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRVL 117
L+T + DSP++ + ++ + VVD + L G++S+ D+ R +
Sbjct: 77 LITIREDSPITGALALXRQFNIRHLPVVDDKGNLKGIISIRDITRAI 123
>pdb|3KOW|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOX|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOY|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOZ|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KP0|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP1|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
Length = 763
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 70 ELLTCQVDSPLSEVIGKALTKHVHRVWVVDQ-QRLLLGLVSLTDMIRVLRTSILAD 124
+L + S ++ G+ + H++ + D ++ L+G+ L DM+++ R +L D
Sbjct: 321 KLTRADIQSTITPDEGRNVPWHIYNIEACDTAKQALIGMDGLMDMVQLKREGVLGD 376
>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
Length = 184
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 92 VHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADF 125
+ R VVD ++G+V+LTD+ R L + + D
Sbjct: 106 LERCAVVDDPGRVVGIVTLTDLSRYLSRASITDI 139
>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
Length = 198
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 92 VHRVWVVDQQRLLLGLVSLTDMIRVLRTSILADF 125
+ R VVD ++G+V+LTD+ R L + + D
Sbjct: 120 LERCAVVDDPGRVVGIVTLTDLSRYLSRASITDI 153
>pdb|3LKW|A Chain A, Crystal Structure Of Dengue Virus 1 Ns2bNS3 PROTEASE
ACTIVE Site Mutant
Length = 236
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 8 NVERNSISLGNGWRLIGTFSASD 30
+V+++ IS G GWR G+++A +
Sbjct: 121 SVKKDLISYGGGWRFQGSWNAGE 143
>pdb|3L6P|A Chain A, Crystal Structure Of Dengue Virus 1 Ns2bNS3 PROTEASE
Length = 236
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 8 NVERNSISLGNGWRLIGTFSASD 30
+V+++ IS G GWR G+++A +
Sbjct: 121 SVKKDLISYGGGWRFQGSWNAGE 143
>pdb|1O50|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein
(Tm0935) From Thermotoga Maritima At 1.87 A Resolution
Length = 157
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 73 TCQVDSPLSEVIGKALTKHVHRVWVVDQQRLLLGLVSLTDMIRV 116
+ D+P+ E++ + L V R V + L+G++ + +++V
Sbjct: 28 VVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKV 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,409,064
Number of Sequences: 62578
Number of extensions: 113922
Number of successful extensions: 246
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 37
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)